Query 015536
Match_columns 405
No_of_seqs 125 out of 204
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:13:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015536.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015536hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2545 Conserved membrane pro 100.0 3.4E-90 7.4E-95 683.9 26.7 350 29-405 192-543 (543)
2 KOG0482 DNA replication licens 100.0 2.4E-47 5.2E-52 386.8 19.3 332 28-398 242-639 (721)
3 COG1241 MCM2 Predicted ATPase 100.0 5E-40 1.1E-44 350.4 25.9 332 28-397 187-592 (682)
4 KOG0480 DNA replication licens 100.0 2.8E-38 6.1E-43 327.9 21.3 343 29-399 216-645 (764)
5 KOG0481 DNA replication licens 100.0 7.1E-34 1.5E-38 289.2 24.1 330 31-396 229-638 (729)
6 KOG0478 DNA replication licens 100.0 3.6E-34 7.8E-39 299.3 18.2 335 28-399 320-726 (804)
7 PTZ00111 DNA replication licen 100.0 1.6E-32 3.6E-37 299.1 25.0 328 37-396 348-803 (915)
8 KOG0479 DNA replication licens 100.0 2.6E-31 5.6E-36 273.6 23.4 321 31-396 207-641 (818)
9 PF13615 Racemase_4: Putative 100.0 6.2E-32 1.3E-36 226.8 7.8 102 132-233 1-102 (102)
10 smart00350 MCM minichromosome 100.0 9E-29 2E-33 260.5 29.2 339 29-396 96-503 (509)
11 PF00493 MCM: MCM2/3/5 family 100.0 1.4E-32 3.1E-37 275.0 -0.9 250 126-397 13-326 (331)
12 KOG0477 DNA replication licens 100.0 7.1E-30 1.5E-34 264.6 18.1 327 33-397 354-757 (854)
13 TIGR02442 Cob-chelat-sub cobal 98.9 6.8E-08 1.5E-12 105.0 19.8 230 138-396 5-303 (633)
14 TIGR02031 BchD-ChlD magnesium 98.8 2.5E-07 5.4E-12 99.9 17.2 225 145-396 3-257 (589)
15 TIGR00368 Mg chelatase-related 98.5 2.3E-06 4.9E-11 90.7 15.6 229 139-396 194-498 (499)
16 TIGR02030 BchI-ChlI magnesium 98.5 7.2E-06 1.6E-10 82.9 16.9 232 138-397 5-309 (337)
17 PRK13407 bchI magnesium chelat 98.5 2.3E-05 4.9E-10 79.2 20.4 230 139-396 10-305 (334)
18 PRK09862 putative ATP-dependen 98.4 6.2E-06 1.3E-10 87.4 14.8 214 167-397 209-492 (506)
19 CHL00081 chlI Mg-protoporyphyr 98.3 0.0001 2.2E-09 75.0 20.4 230 139-396 19-321 (350)
20 TIGR00764 lon_rel lon-related 98.3 1.8E-05 4E-10 85.8 15.5 166 224-404 207-398 (608)
21 PRK13406 bchD magnesium chelat 98.1 0.00014 2.9E-09 78.7 17.4 223 142-396 8-249 (584)
22 PRK13531 regulatory ATPase Rav 98.1 0.00084 1.8E-08 70.9 22.6 231 126-394 9-281 (498)
23 PRK13765 ATP-dependent proteas 97.3 0.002 4.3E-08 70.5 11.7 161 224-395 216-398 (637)
24 COG1239 ChlI Mg-chelatase subu 97.0 0.013 2.9E-07 60.6 14.1 236 134-403 14-328 (423)
25 CHL00181 cbbX CbbX; Provisiona 97.0 0.03 6.5E-07 55.5 15.5 229 128-390 14-271 (287)
26 TIGR02902 spore_lonB ATP-depen 96.5 0.14 3.1E-06 55.0 17.9 147 225-395 166-330 (531)
27 TIGR02881 spore_V_K stage V sp 95.9 0.17 3.6E-06 49.0 13.4 196 168-390 42-253 (261)
28 COG1067 LonB Predicted ATP-dep 95.6 0.19 4.1E-06 55.3 13.6 162 224-404 215-406 (647)
29 PF01078 Mg_chelatase: Magnesi 95.6 0.064 1.4E-06 50.8 8.7 128 139-290 5-155 (206)
30 COG0714 MoxR-like ATPases [Gen 95.4 2 4.4E-05 43.0 19.2 243 126-394 13-293 (329)
31 PF13654 AAA_32: AAA domain; P 95.3 0.039 8.5E-07 59.0 7.0 165 224-396 322-505 (509)
32 TIGR02640 gas_vesic_GvpN gas v 95.1 0.29 6.4E-06 47.5 11.8 147 225-394 94-254 (262)
33 COG0606 Predicted ATPase with 94.4 0.21 4.7E-06 52.6 9.3 233 140-397 182-485 (490)
34 PRK10787 DNA-binding ATP-depen 94.0 0.66 1.4E-05 52.3 12.9 237 134-394 319-579 (784)
35 TIGR02880 cbbX_cfxQ probable R 92.9 2.5 5.5E-05 41.7 13.7 212 130-376 15-252 (284)
36 PF13335 Mg_chelatase_2: Magne 92.0 0.64 1.4E-05 38.7 6.9 54 338-396 42-95 (96)
37 TIGR02903 spore_lon_C ATP-depe 91.6 3.4 7.5E-05 45.3 14.0 45 225-277 256-301 (615)
38 TIGR02329 propionate_PrpR prop 90.1 9.8 0.00021 41.1 15.5 114 165-292 232-356 (526)
39 PF00158 Sigma54_activat: Sigm 89.9 0.45 9.8E-06 43.4 4.5 112 167-292 21-142 (168)
40 PRK11608 pspF phage shock prot 89.9 2.2 4.8E-05 42.9 9.9 112 167-292 28-149 (326)
41 PRK15424 propionate catabolism 89.3 12 0.00025 40.6 15.3 193 165-371 239-459 (538)
42 TIGR02639 ClpA ATP-dependent C 88.8 3 6.6E-05 46.6 10.9 126 130-271 447-583 (731)
43 PRK11034 clpA ATP-dependent Cl 88.2 3.6 7.9E-05 46.3 10.9 128 129-271 450-587 (758)
44 PRK05201 hslU ATP-dependent pr 86.7 5.4 0.00012 42.1 10.4 139 230-376 244-403 (443)
45 PRK05342 clpX ATP-dependent pr 85.3 4.1 8.9E-05 42.6 8.8 136 129-271 63-217 (412)
46 TIGR00635 ruvB Holliday juncti 85.0 32 0.0007 33.5 14.7 184 170-396 32-228 (305)
47 TIGR02974 phageshock_pspF psp 84.3 2.9 6.2E-05 42.3 7.0 112 167-292 21-142 (329)
48 TIGR01817 nifA Nif-specific re 83.7 26 0.00056 37.6 14.3 183 167-371 218-422 (534)
49 PRK05022 anaerobic nitric oxid 83.4 36 0.00078 36.4 15.2 113 166-292 208-330 (509)
50 TIGR02915 PEP_resp_reg putativ 81.4 28 0.0006 36.0 13.1 112 167-292 161-282 (445)
51 PRK08084 DNA replication initi 80.1 19 0.00042 34.2 10.7 56 332-396 180-235 (235)
52 TIGR03346 chaperone_ClpB ATP-d 79.7 20 0.00043 40.9 12.3 125 131-271 559-697 (852)
53 PF05496 RuvB_N: Holliday junc 79.1 14 0.0003 35.8 9.1 168 170-374 52-226 (233)
54 TIGR03420 DnaA_homol_Hda DnaA 78.8 42 0.00092 30.9 12.3 61 322-394 165-225 (226)
55 PRK00080 ruvB Holliday junctio 77.4 50 0.0011 32.9 13.1 189 170-396 53-249 (328)
56 PF07726 AAA_3: ATPase family 76.9 22 0.00048 31.5 9.1 102 170-292 1-109 (131)
57 PRK11388 DNA-binding transcrip 76.8 25 0.00054 38.5 11.6 111 167-292 347-465 (638)
58 PRK10865 protein disaggregatio 75.8 50 0.0011 37.9 14.0 127 131-271 562-700 (857)
59 PRK03992 proteasome-activating 75.3 55 0.0012 33.8 13.1 37 360-396 335-371 (389)
60 COG2204 AtoC Response regulato 75.3 14 0.00031 39.3 8.8 168 166-347 162-351 (464)
61 PRK10923 glnG nitrogen regulat 74.0 95 0.0021 32.3 14.7 114 165-292 158-281 (469)
62 PTZ00361 26 proteosome regulat 73.5 27 0.00058 36.9 10.3 41 360-400 387-427 (438)
63 PTZ00454 26S protease regulato 72.9 59 0.0013 33.9 12.6 38 360-397 349-386 (398)
64 PF07728 AAA_5: AAA domain (dy 70.9 10 0.00023 32.3 5.6 89 170-273 1-97 (139)
65 PRK08727 hypothetical protein; 68.8 77 0.0017 30.1 11.6 180 170-397 43-231 (233)
66 TIGR01242 26Sp45 26S proteasom 68.7 69 0.0015 32.5 11.9 36 360-395 326-361 (364)
67 TIGR00763 lon ATP-dependent pr 67.5 92 0.002 35.2 13.6 214 133-370 316-547 (775)
68 TIGR00382 clpX endopeptidase C 66.8 18 0.00038 38.0 7.2 133 129-268 69-222 (413)
69 PRK15429 formate hydrogenlyase 65.8 1.2E+02 0.0025 33.8 13.8 113 166-292 397-519 (686)
70 TIGR01818 ntrC nitrogen regula 65.1 99 0.0021 32.0 12.5 112 167-292 156-277 (463)
71 CHL00095 clpC Clp protease ATP 63.4 34 0.00074 38.9 9.2 135 130-281 502-650 (821)
72 PHA02244 ATPase-like protein 62.5 31 0.00067 35.9 7.9 108 168-292 119-229 (383)
73 TIGR02928 orc1/cdc6 family rep 61.9 1.8E+02 0.0038 29.1 14.6 55 337-396 219-273 (365)
74 PRK15115 response regulator Gl 61.6 45 0.00098 34.4 9.1 113 166-292 155-277 (444)
75 TIGR03345 VI_ClpV1 type VI sec 59.8 45 0.00097 38.2 9.3 143 130-291 559-715 (852)
76 PF12774 AAA_6: Hydrolytic ATP 59.3 10 0.00023 36.4 3.6 180 172-376 36-226 (231)
77 PRK06893 DNA replication initi 59.1 1.6E+02 0.0035 27.7 14.4 177 169-395 40-228 (229)
78 PRK13342 recombination factor 58.6 74 0.0016 33.0 10.1 23 170-196 38-60 (413)
79 PRK10820 DNA-binding transcrip 58.1 22 0.00047 38.2 6.2 112 167-292 226-347 (520)
80 PRK13341 recombination factor 55.9 1.5E+02 0.0033 33.4 12.5 180 170-394 54-244 (725)
81 PRK11361 acetoacetate metaboli 54.5 63 0.0014 33.4 8.8 113 166-292 164-286 (457)
82 PRK09087 hypothetical protein; 53.2 2.1E+02 0.0045 27.2 13.0 51 335-396 169-221 (226)
83 TIGR01613 primase_Cterm phage/ 51.9 1.4E+02 0.003 29.4 10.4 133 131-291 43-179 (304)
84 CHL00176 ftsH cell division pr 51.8 2.3E+02 0.0049 31.6 12.9 36 360-395 386-421 (638)
85 COG2255 RuvB Holliday junction 51.3 2.8E+02 0.0061 28.2 15.6 214 141-396 30-250 (332)
86 CHL00195 ycf46 Ycf46; Provisio 49.3 2.2E+02 0.0047 30.6 11.9 186 170-395 261-461 (489)
87 PF03847 TFIID_20kDa: Transcri 47.8 1.1E+02 0.0024 23.8 7.1 52 330-395 7-63 (68)
88 PRK00411 cdc6 cell division co 47.4 3.1E+02 0.0068 27.6 13.3 55 337-396 227-281 (394)
89 PRK10365 transcriptional regul 45.5 62 0.0013 33.2 7.0 111 168-292 162-282 (441)
90 smart00803 TAF TATA box bindin 42.8 1E+02 0.0022 23.8 6.1 53 332-395 12-65 (65)
91 TIGR00390 hslU ATP-dependent p 36.1 81 0.0018 33.5 6.1 132 233-370 246-397 (441)
92 KOG2170 ATPase of the AAA+ sup 35.8 39 0.00085 34.3 3.5 123 128-266 73-203 (344)
93 PRK08903 DnaA regulatory inact 34.5 3.8E+02 0.0081 24.8 12.9 54 333-395 171-224 (227)
94 PRK14962 DNA polymerase III su 34.5 2.6E+02 0.0057 29.8 9.7 60 324-395 180-240 (472)
95 PRK14709 hypothetical protein; 32.1 6.5E+02 0.014 26.8 14.8 125 129-277 170-294 (469)
96 TIGR01650 PD_CobS cobaltochela 30.6 6E+02 0.013 25.9 15.5 91 170-272 66-166 (327)
97 PLN03025 replication factor C 29.9 3.9E+02 0.0084 26.4 9.7 56 324-392 162-218 (319)
98 TIGR03015 pepcterm_ATPase puta 29.8 3.1E+02 0.0067 25.8 8.7 65 323-395 195-264 (269)
99 smart00576 BTP Bromodomain tra 29.7 2.7E+02 0.0059 21.7 8.6 62 323-395 6-69 (77)
100 COG4043 Preprotein translocase 28.7 44 0.00095 28.4 2.1 27 33-59 18-44 (111)
101 TIGR02688 conserved hypothetic 27.9 7.7E+02 0.017 26.3 15.2 203 168-400 209-438 (449)
102 PRK14086 dnaA chromosomal repl 27.1 9.1E+02 0.02 26.9 12.7 54 333-395 460-513 (617)
103 KOG3416 Predicted nucleic acid 26.9 72 0.0016 28.2 3.2 27 35-61 47-74 (134)
104 PTZ00112 origin recognition co 26.7 5.2E+02 0.011 30.6 10.6 74 316-400 935-1010(1164)
105 PF00125 Histone: Core histone 26.6 2.1E+02 0.0046 21.8 5.7 49 337-396 26-74 (75)
106 COG3829 RocR Transcriptional r 26.3 1.1E+02 0.0023 33.4 5.1 111 167-292 267-389 (560)
107 PF12616 DUF3775: Protein of u 26.1 87 0.0019 25.0 3.4 25 373-397 19-44 (75)
108 PLN00158 histone H2B; Provisio 26.0 4.2E+02 0.009 23.1 7.7 64 322-396 26-92 (116)
109 PRK07003 DNA polymerase III su 25.8 5.2E+02 0.011 29.7 10.4 84 234-347 119-206 (830)
110 KOG3982 Runt and related trans 25.7 92 0.002 32.3 4.2 55 232-306 147-202 (475)
111 PTZ00463 histone H2B; Provisio 25.4 4.3E+02 0.0094 23.0 7.6 64 322-396 27-93 (117)
112 PRK08691 DNA polymerase III su 22.9 3.6E+02 0.0078 30.5 8.5 60 323-394 181-241 (709)
113 cd07981 TAF12 TATA Binding Pro 22.3 3.8E+02 0.0082 20.8 8.3 46 337-396 18-66 (72)
114 PF06309 Torsin: Torsin; Inte 21.7 3.3E+02 0.0071 24.0 6.4 59 128-193 16-74 (127)
No 1
>KOG2545 consensus Conserved membrane protein [Function unknown]
Probab=100.00 E-value=3.4e-90 Score=683.85 Aligned_cols=350 Identities=45% Similarity=0.726 Sum_probs=316.4
Q ss_pred ccCC-CCccEEEEEEcCCCCCcccCCEEEEEEEeecCcccccccCCCCCCccccchhhcccCCCCCcceeeEEEEEEecC
Q 015536 29 NAER-NSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDV 107 (405)
Q Consensus 29 ~~p~-~~~~ciVkvYd~~~~~lklndvve~vGIl~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlHvi~~~~~~~ 107 (405)
.+|. ++.||+||||++++.++|+||+|||+|||+++|.+..-+..+ +....+.+ +.| .+.+++
T Consensus 192 Plps~ds~aClVKvYe~~et~~qvnd~vdf~Gilsvdp~la~ld~ld---~~~~ae~q----------a~h---vq~lqh 255 (543)
T KOG2545|consen 192 PLPSNDSGACLVKVYEGMETKVQVNDAVDFIGILSVDPELASLDGLD---CLHMAEFQ----------AYH---VQALQH 255 (543)
T ss_pred CCCCCCCCceEEEEecCcccceehhhhhhhheeeecChhhhcCCCcc---cccHHHHH----------HHH---HhccCC
Confidence 4577 899999999999888899999999999999999883322111 11121211 122 233333
Q ss_pred CCccCCCCCCCCCchhH-HHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHH
Q 015536 108 NDFLHSSPMMEPKPQLV-KETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGN 186 (405)
Q Consensus 108 ~~~~~~~~~~~~~~~~~-~~iR~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~ 186 (405)
. +|. .++-+ .++|++|+.||+.+|+||.+|||||||||+|.||+|+++.++|+|+|||+|||.+ +.|..
T Consensus 256 ~-----nPl---lp~ilr~el~~~Llkylt~~Lg~d~iAAeyLllhLlStV~~R~d~l~iGkftlNL~ncpke--s~f~t 325 (543)
T KOG2545|consen 256 P-----NPL---LPEILRKELRPKLLKYLTKVLGNDNIAAEYLLLHLLSTVYHRTDGLVIGKFTLNLTNCPKE--SIFVT 325 (543)
T ss_pred C-----Ccc---chHHHHHHhhHHHHHHHHHhhcCchHHHHHHHHHHHHHhhccccceEeeeeEEeecCCCch--hHHHH
Confidence 2 111 22223 5678999999999999999999999999999999999999999999999999975 68999
Q ss_pred HHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEecCCceEEEeCCCCCcCcccccchhHHHHHHHHHH
Q 015536 187 QVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLME 266 (405)
Q Consensus 187 ~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa~gT~lviDEt~l~~G~L~~~Gv~N~~aL~~li~ 266 (405)
+|+.+|+.|+|+++++|||+++||+++|.|+|||++|||.+|+||||+|||+|||||.|++|+||..||+|+++|++||+
T Consensus 326 qLy~iL~~Llpas~~~pmtie~lNta~f~PkkDyetNrLvsgvLQlapgThLVLDETeLqqGtLn~vGvhnvq~LsnLI~ 405 (543)
T KOG2545|consen 326 QLYSILRPLLPASVIQPMTIEELNTAPFYPKKDYETNRLVSGVLQLAPGTHLVLDETELQQGTLNDVGVHNVQFLSNLIS 405 (543)
T ss_pred HHHHHHHHhchhhheeeeeHHhhcccCccccccccccccccceeecCCCceEEeehhhcCCCccCccchhhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCceeeeecccceeeeeccceEEeecCCCCcccCceeeeeccCCCCCCCCCChhhHHHHHHHHHHhccCCCCCChhHHHH
Q 015536 267 FQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKV 346 (405)
Q Consensus 267 ~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~~lp~d~~vpl~~~~~~~~~~~~~~~l~~~R~Yi~~ar~~~~~i~~e~~~~ 346 (405)
+|+|.|||+||+|++++|++++|+|+|+| |+|+|+.++++++..+..+..+|+++++||.|++.+|...++|++|++++
T Consensus 406 ~Qkl~ydfqyyqme~~~nv~vlIlSeGrs-ilPADl~i~lqp~~v~~le~~tps~l~q~rcyltt~r~l~~nIsee~t~~ 484 (543)
T KOG2545|consen 406 QQKLTYDFQYYQMEVHSNVRVLILSEGRS-ILPADLGIRLQPDSVDTLEFPTPSDLLQFRCYLTTMRNLRANISEEMTDY 484 (543)
T ss_pred ccccceecceEEEEeccCceEEEeeCCcc-cCcccccccCCCCCCCccccCChhHHHHHHHHHHHHHhhccCccHHHHHH
Confidence 99999999999999999999999999999 99999999999998877777899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhhcC
Q 015536 347 VESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRERLK 405 (405)
Q Consensus 347 Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~LE~~R~~R~~ 405 (405)
||+|||+|||.|+..+++|||++|++||+++.|+|++++++|+|++|++||+.|+.|+|
T Consensus 485 iq~dfV~mRq~n~~snaddLs~lLv~sRlls~S~G~ttlsre~wq~a~ele~lrr~rlq 543 (543)
T KOG2545|consen 485 IQSDFVSMRQYNKESNADDLSLLLVCSRLLSKSFGRTTLSREDWQAARELENLRRVRLQ 543 (543)
T ss_pred HHHHHHHHHhhCcccchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999986
No 2
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=100.00 E-value=2.4e-47 Score=386.78 Aligned_cols=332 Identities=17% Similarity=0.155 Sum_probs=275.3
Q ss_pred cccCCCCccEE--EEEEcCCCCCcccCCEEEEEEEeecCcccccccCCCCCCccccchhhcccCCCCCcceeeEEEEEEe
Q 015536 28 TNAERNSLPCL--VKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKL 105 (405)
Q Consensus 28 ~~~p~~~~~ci--VkvYd~~~~~lklndvve~vGIl~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlHvi~~~~~ 105 (405)
-.+|.||+|+- |.||++.+..+.|||+|+|.|||.+-|..++..-- .++..| +|+.+-.+..+.|.
T Consensus 242 ~qVPvG~IPRsltv~~~ge~tr~~~PGDvV~vsGiFLP~pytGfr~~~-----aGLlad-------tYLeAh~v~~~nk~ 309 (721)
T KOG0482|consen 242 DQVPVGHIPRSLTVHVYGEMTRKCQPGDVVVVSGIFLPIPYTGFRALK-----AGLLAD-------TYLEAHRVVQINKK 309 (721)
T ss_pred ccCCCCccCceeEEEEecccceecCCCCEEEEeeeecccchhhHHHHH-----hhhHHH-------HHHHHhhhhhhccc
Confidence 34699999995 77789889999999999999999999998876321 245444 46666555656665
Q ss_pred cCCCccCCCCCCCCCchhH-----HHHHHHHHHHHHhhhcCcHHHHHHHHHHHhccccccc-Ccee-ecceeeEeecCCC
Q 015536 106 DVNDFLHSSPMMEPKPQLV-----KETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARI-DNVA-VGKLSLNLTCLSK 178 (405)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~-----~~iR~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~-d~~~-~G~~sLnl~~~p~ 178 (405)
+.+ ....+. ..+... .+..++|..+||+-++|+.+++++|||.|+++|..+. |||. +|+++++|+|+||
T Consensus 310 ~~~--~~~~~~--~~~~~~~~~~~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPG 385 (721)
T KOG0482|consen 310 YDN--IEKTGE--LEPEELELIAEGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPG 385 (721)
T ss_pred ccc--cccccc--ccHHHHHHhhcccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCc
Confidence 432 111111 112222 2347999999999999999999999999999999988 8977 6999999999999
Q ss_pred CccchhHHHHHHHHHhhcCceEEEecc---hhhhhcCCCCccccCCCC--cccccceEecCCceEEEeCC-CCCcCcccc
Q 015536 179 ESVSVFGNQVRLSVQNLLPFTQCIPLT---VNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDET-QLETGTLNS 252 (405)
Q Consensus 179 ~~~~~~~~~L~~~l~~l~P~~~~l~lt---~~~Ln~~~~~P~kD~~t~--~L~~G~LQLa~gT~lviDEt-~l~~G~L~~ 252 (405)
++++||++++..|+||++|++.. --+|+++. .||+.|| .||.|+|+|||||+|||||. ||.+.
T Consensus 386 ----VAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAV---mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~---- 454 (721)
T KOG0482|consen 386 ----VAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAV---MKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES---- 454 (721)
T ss_pred ----hhHHHHHHHHHhcCcccceecCCCCCccccchhh---hcCCCCCeeEeccceEEEccCceEeehhhhhhhhh----
Confidence 99999999999999999999652 33344422 4999999 89999999999999999995 89988
Q ss_pred cchhHHHHHHHHHHhCcee--------------------------eeecccceeeeeccceEEeecCCCCcccCceeeee
Q 015536 253 TGVENARLLKNLMEFQKVE--------------------------YNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPF 306 (405)
Q Consensus 253 ~Gv~N~~aL~~li~~Q~v~--------------------------YdF~y~~~~~~~dl~~lvLS~gKS~~lp~d~~vpl 306 (405)
+++|||++|+||+|+ |+ |-.+.+-|+++|..+||+ ||+.+.+
T Consensus 455 ----DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYn-prrs~e~NI~LPaALLSR-------FDll~Li 522 (721)
T KOG0482|consen 455 ----DRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYN-PRRSPEQNINLPAALLSR-------FDLLWLI 522 (721)
T ss_pred ----hhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccC-cccChhHhcCCcHHHHHh-------hhhhhhh
Confidence 499999999999999 55 556778899999999999 9999999
Q ss_pred ccCCCCC-----------C--------CCCChhhHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCC------CC
Q 015536 307 QPSSAAS-----------F--------EVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADR------SL 361 (405)
Q Consensus 307 ~~~~~~~-----------~--------~~~~~~~l~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~------~i 361 (405)
++.++.+ + ..+.+-+++.+|.||+.||..++.+|+++.+||...||++||+.+ .+
T Consensus 523 ~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~t 602 (721)
T KOG0482|consen 523 QDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYT 602 (721)
T ss_pred ccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCccc
Confidence 8666543 0 123556889999999999999999999999999999999999763 47
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 015536 362 GGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELER 398 (405)
Q Consensus 362 t~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~LE~ 398 (405)
|++.|..+|||+.++|+.+..+.|.++|.++|++|=+
T Consensus 603 tpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme 639 (721)
T KOG0482|consen 603 TPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLME 639 (721)
T ss_pred CHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 8999999999999999999999999999999999843
No 3
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=5e-40 Score=350.42 Aligned_cols=332 Identities=17% Similarity=0.173 Sum_probs=258.3
Q ss_pred cccCCCCccEEEEEE--cCCCCCcccCCEEEEEEEeecCcccccccCCCCCCccccchhhcccCCCCCcceeeEEEEEEe
Q 015536 28 TNAERNSLPCLVKIY--DCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKL 105 (405)
Q Consensus 28 ~~~p~~~~~ciVkvY--d~~~~~lklndvve~vGIl~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlHvi~~~~~ 105 (405)
..+|.+..|.-+.|+ ++..+.++|||.|+++||+...|....... . ..+.+==-+|+....+.
T Consensus 187 e~~p~g~~Prs~~vil~~dlv~~~~pGdrV~itGi~~~~~~~~~~~~-~--------------~~~~~~~~~~a~~v~~~ 251 (682)
T COG1241 187 ELVPGGELPRSIEVILEDDLVDSVRPGDRVKITGVVRIVPSRSLSGR-R--------------KGPVFEIYLEANSVEKL 251 (682)
T ss_pred ccCCCCCCCceEEEEEecCcccccCCCCEEEEEEEEecccccccccc-c--------------CCceEEEEEEEEEEEec
Confidence 345667788865554 777889999999999999998763211000 0 00011112334444443
Q ss_pred cCCCccCCCCCCCC---CchhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhccccccc-Cce-eecceeeEeecCCCCc
Q 015536 106 DVNDFLHSSPMMEP---KPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARI-DNV-AVGKLSLNLTCLSKES 180 (405)
Q Consensus 106 ~~~~~~~~~~~~~~---~~~~~~~iR~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~-d~~-~~G~~sLnl~~~p~~~ 180 (405)
........+++++. ..+...++++.++++|+++++|++.+++++||+|||+|.... +|+ .+|++++.|.|+|+
T Consensus 252 ~~~~~~~~t~ed~e~i~elak~~~i~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPg-- 329 (682)
T COG1241 252 DKREEVEITEEDEEEIKELAKRPDIYDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPG-- 329 (682)
T ss_pred cchhhccCCHHHHHHHHHHhcCCcHHHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCc--
Confidence 32111111111110 111124568899999999999999999999999999998855 454 68999999999998
Q ss_pred cchhHHHHHHHHHhhcCceEEEec---chhhhhcCCCCccccCCCC--cccccceEecCCceEEEeCC-CCCcCcccccc
Q 015536 181 VSVFGNQVRLSVQNLLPFTQCIPL---TVNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDET-QLETGTLNSTG 254 (405)
Q Consensus 181 ~~~~~~~L~~~l~~l~P~~~~l~l---t~~~Ln~~~~~P~kD~~t~--~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~G 254 (405)
++++||++++.+++||++|+.. |..+|++. -+||..|+ .|++|+|+|||||+|||||. ||.++
T Consensus 330 --taKSqlLk~v~~~aPr~vytsgkgss~~GLTAa---v~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~------ 398 (682)
T COG1241 330 --TAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAA---VVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEE------ 398 (682)
T ss_pred --hhHHHHHHHHHhhCCceEEEccccccccCceeE---EEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChH------
Confidence 9999999999999999999987 57777763 47898877 69999999999999999995 88887
Q ss_pred hhHHHHHHHHHHhCcee--------------------------eeecccceeeeeccceEEeecCCCCcccCceeeeecc
Q 015536 255 VENARLLKNLMEFQKVE--------------------------YNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQP 308 (405)
Q Consensus 255 v~N~~aL~~li~~Q~v~--------------------------YdF~y~~~~~~~dl~~lvLS~gKS~~lp~d~~vpl~~ 308 (405)
...|||++|+||+|+ || ++.++.-++|+|..+||+ ||++|++.+
T Consensus 399 --dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd-~~~~~~enI~l~~~lLSR-------FDLifvl~D 468 (682)
T COG1241 399 --DRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYD-PKKTVAENINLPAPLLSR-------FDLIFVLKD 468 (682)
T ss_pred --HHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCC-CCCCHHHhcCCChhHHhh-------CCeeEEecC
Confidence 499999999999999 55 555666799999999999 999999998
Q ss_pred CCCCCC-----------C-CCChh--------------hHHHHHHHHHHhccC-CCCCChhHHHHHHHHHHHHHhcCC--
Q 015536 309 SSAASF-----------E-VVPAE--------------TLEAWRWYLASVRSL-PHSIESDMQKVVESDLVAARQADR-- 359 (405)
Q Consensus 309 ~~~~~~-----------~-~~~~~--------------~l~~~R~Yi~~ar~~-~~~i~~e~~~~Iq~~fV~~Rq~~~-- 359 (405)
+++... + .-.++ +.+.+|+||+|||+. .|.+++++.++|.+.||++|+.+.
T Consensus 469 ~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~ 548 (682)
T COG1241 469 DPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALV 548 (682)
T ss_pred CCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccc
Confidence 877641 0 00111 467899999999984 689999999999999999999642
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 015536 360 ------SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELE 397 (405)
Q Consensus 360 ------~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~LE 397 (405)
.||.++|++++|||.++|+.+.++.++.+|.++|.+|=
T Consensus 549 ~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv 592 (682)
T COG1241 549 EEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLV 592 (682)
T ss_pred cccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHH
Confidence 59999999999999999999999999999999999883
No 4
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=100.00 E-value=2.8e-38 Score=327.92 Aligned_cols=343 Identities=18% Similarity=0.171 Sum_probs=262.6
Q ss_pred ccCCCCccEEEEEE--cCCCCCcccCCEEEEEEEeecCcccccccCCCCCCccccchhhcccCCC--CCcceeeEEEEEE
Q 015536 29 NAERNSLPCLVKIY--DCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPP--EKVPRLHCLIHRK 104 (405)
Q Consensus 29 ~~p~~~~~ciVkvY--d~~~~~lklndvve~vGIl~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~--~~vPrlHvi~~~~ 104 (405)
.+|.|++|+.|-|. ++..+.++|||.|+|+|||-+.|......... .-. .+.+.-. ..+--+-++..+.
T Consensus 216 E~p~GsiPRtvdviLr~dlVe~~~pGD~v~~TGiliVvpdv~~l~~pg------sk~-~n~r~~~~~~~i~~lkal~Vrd 288 (764)
T KOG0480|consen 216 EIPRGSIPRTVDVILRGDLVETAQPGDKVDITGILIVVPDVSQLGGPG------SKA-ENNRGGETGDGITGLKALGVRD 288 (764)
T ss_pred hCCCCCCCceeEEEEhhhhHhhcCCCCEEEEEEEEEEecChHHhcCCc------ccc-ccccCCCcccceeeehhccccc
Confidence 46999999986654 77788999999999999999888532110000 000 0000000 0122222233333
Q ss_pred ecCC-CccCC--C---C--C-----------CCC-----CchhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccc
Q 015536 105 LDVN-DFLHS--S---P--M-----------MEP-----KPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHAR 160 (405)
Q Consensus 105 ~~~~-~~~~~--~---~--~-----------~~~-----~~~~~~~iR~~li~~La~~l~GD~laAeyLLL~L~s~V~~r 160 (405)
+... .|+.. + + + .+. ..+..+.+...|+.+|.++++|+++++.-+||+|+|+|+++
T Consensus 289 l~yq~aFlac~~~~~~~~ee~~~~~~~~~~s~~e~~~~~em~~~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~ 368 (764)
T KOG0480|consen 289 LTYQLAFLACHVQSTLAVEEDDEEDMLNSMSSEEFAEIREMSKDENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKS 368 (764)
T ss_pred chhhhhHhhhhcccccccchhhhHHHhhhccHHHHHHHHHHhcCchHHHHHHHhhCccccchHHHHhhHHHHHhCCcccc
Confidence 2210 01000 0 0 0 000 11122445788999999999999999999999999999998
Q ss_pred cC-cee-ecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEec---chhhhhcCCCCccccCCCC--cccccceEec
Q 015536 161 ID-NVA-VGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPL---TVNYLNTASLAPKKDYQTN--RLIPGVLQLA 233 (405)
Q Consensus 161 ~d-~~~-~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~l---t~~~Ln~~~~~P~kD~~t~--~L~~G~LQLa 233 (405)
.+ +.+ +|+++++|+|+|+ +.++|++++...++||++|+.. |.++|+.+ -+||.+++ .+++|+|.||
T Consensus 369 a~eg~~lRGDinv~iVGDPg----t~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaa---VvkD~esgdf~iEAGALmLA 441 (764)
T KOG0480|consen 369 AGEGTSLRGDINVCIVGDPG----TGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAA---VVKDEESGDFTIEAGALMLA 441 (764)
T ss_pred CCCCccccCCceEEEeCCCC----ccHHHHHHHHhccCCcceEecCcccccccceEE---EEecCCCCceeeecCcEEEc
Confidence 86 544 7999999999998 8999999999999999999987 57888774 48999998 8999999999
Q ss_pred CCceEEEeCCCCCcCcccccchhHHHHHHHHHHhCceeeee-------------------------cccceeeeeccceE
Q 015536 234 DGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNF-------------------------EYYKMEMIADVQML 288 (405)
Q Consensus 234 ~gT~lviDEt~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF-------------------------~y~~~~~~~dl~~l 288 (405)
|||+|||||. ++++++.-.|||++|+||+|+... .-.++..|++....
T Consensus 442 DnGICCIDEF-------DKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msAp 514 (764)
T KOG0480|consen 442 DNGICCIDEF-------DKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAP 514 (764)
T ss_pred cCceEEechh-------cccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCch
Confidence 9999999996 344455689999999999999433 34566779999999
Q ss_pred EeecCCCCcccCceeeeeccCCCCCC---------------CC----CChhhHHHHHHHHHHhccCCCCCChhHHHHHHH
Q 015536 289 ILSEGKSNIVPADLVIPFQPSSAASF---------------EV----VPAETLEAWRWYLASVRSLPHSIESDMQKVVES 349 (405)
Q Consensus 289 vLS~gKS~~lp~d~~vpl~~~~~~~~---------------~~----~~~~~l~~~R~Yi~~ar~~~~~i~~e~~~~Iq~ 349 (405)
|+|+ ||+.|.+-++.+... .. ..+-.++++|+||.+||...|.++.|+.++|.+
T Consensus 515 imSR-------FDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve 587 (764)
T KOG0480|consen 515 IMSR-------FDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVE 587 (764)
T ss_pred hhhh-------hcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHH
Confidence 9999 999999988776531 11 123457999999999999999999999999999
Q ss_pred HHHHHHhcCC--------CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 015536 350 DLVAARQADR--------SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERL 399 (405)
Q Consensus 350 ~fV~~Rq~~~--------~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~LE~~ 399 (405)
.|+.+|+.+. .||.++|+.++||+.++|+..-.+++|+++.+.|.+|=++
T Consensus 588 ~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~ 645 (764)
T KOG0480|consen 588 KYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKK 645 (764)
T ss_pred HHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHh
Confidence 9999999872 4999999999999999999999999999999999998554
No 5
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=100.00 E-value=7.1e-34 Score=289.19 Aligned_cols=330 Identities=15% Similarity=0.167 Sum_probs=254.2
Q ss_pred CCCCccEEEEEEcC--CCCCcccCCEEEEEEEeecCcccccccCCCCCCccccchhhcccCCCCCcceeeEEEEEEecCC
Q 015536 31 ERNSLPCLVKIYDC--PESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVN 108 (405)
Q Consensus 31 p~~~~~ciVkvYd~--~~~~lklndvve~vGIl~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlHvi~~~~~~~~ 108 (405)
|.|-+|+-+.++-+ ..+.+-||..|.++||++.-........+. . .... ..|-+-|+-.+.-...
T Consensus 229 P~GE~PRhl~L~~dRyL~~kvvPG~RvtI~GIYsI~~~~~~~~s~k----~----~v~i-----R~PyirVvGi~~ds~~ 295 (729)
T KOG0481|consen 229 PVGEMPRHLQLFCDRYLTNKVVPGNRVTIMGIYSIKKFGSTSSSDK----S----GVGI-----RTPYIRVVGIQDDSEG 295 (729)
T ss_pred CcCcCcchhhhhhhHHHhccccCCceEEEEEEEEeeeccccCCCCc----c----ceee-----ecceEEEEEEEeccCC
Confidence 44666777776644 356799999999999999653222111100 0 0001 1455555544443211
Q ss_pred CccCCC----CCCCC---CchhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhccccccc-Ccee-ecceeeEeecCCCC
Q 015536 109 DFLHSS----PMMEP---KPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARI-DNVA-VGKLSLNLTCLSKE 179 (405)
Q Consensus 109 ~~~~~~----~~~~~---~~~~~~~iR~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~-d~~~-~G~~sLnl~~~p~~ 179 (405)
.=.++. ++.+. ..+..+++++.+-..||++++|+.++++++.|.|+|+-.++- ||+. +|++++.|-|+|+
T Consensus 296 ss~~~~~~ft~eEEEeFk~la~~~d~Ye~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPg- 374 (729)
T KOG0481|consen 296 SSRSSATMFTPEEEEEFKKLAASPDVYERISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPG- 374 (729)
T ss_pred ccccCcccCChhHHHHHHHHhcCccHHHHHhhccCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCc-
Confidence 000111 11000 111224567888888999999999999999999999987754 7866 6999999999998
Q ss_pred ccchhHHHHHHHHHhhcCceEEEec---chhhhhcCCCCccccCCC-C-cccccceEecCCceEEEeCC-CCCcCccccc
Q 015536 180 SVSVFGNQVRLSVQNLLPFTQCIPL---TVNYLNTASLAPKKDYQT-N-RLIPGVLQLADGSHLIIDET-QLETGTLNST 253 (405)
Q Consensus 180 ~~~~~~~~L~~~l~~l~P~~~~l~l---t~~~Ln~~~~~P~kD~~t-~-~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~ 253 (405)
++++||++|++.+.|-.+|++. ++++|++.. .+|+.| + .||.|+++|||||++||||. ||.+.
T Consensus 375 ---tAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV---~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~----- 443 (729)
T KOG0481|consen 375 ---TAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASV---IRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRED----- 443 (729)
T ss_pred ---hhHHHHHHHHHhcCceEEEecCCCcccccceeeE---EecCCcceEEEecceEEEecCCEEEeehhhccCch-----
Confidence 9999999999999999999987 588887744 688877 4 89999999999999999995 89988
Q ss_pred chhHHHHHHHHHHhCcee--------------------------eeecccceeeeeccceEEeecCCCCcccCceeeeec
Q 015536 254 GVENARLLKNLMEFQKVE--------------------------YNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQ 307 (405)
Q Consensus 254 Gv~N~~aL~~li~~Q~v~--------------------------YdF~y~~~~~~~dl~~lvLS~gKS~~lp~d~~vpl~ 307 (405)
++-|||++|+||+++ || .+.+-+-|+|....|||+ ||++|.++
T Consensus 444 ---DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyD-d~Kt~~dNIDf~~TILSR-------FDmIFIVK 512 (729)
T KOG0481|consen 444 ---DRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYD-DTKTGEDNIDFMPTILSR-------FDMIFIVK 512 (729)
T ss_pred ---hhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCcccccc-ccCCcccccchhhhHhhh-------ccEEEEEe
Confidence 499999999999999 55 455556699999999999 99999998
Q ss_pred cCCCCC-----------C-----CC--------CChhhHHHHHHHHHHhccC-CCCCChhHHHHHHHHHHHHHhcC----
Q 015536 308 PSSAAS-----------F-----EV--------VPAETLEAWRWYLASVRSL-PHSIESDMQKVVESDLVAARQAD---- 358 (405)
Q Consensus 308 ~~~~~~-----------~-----~~--------~~~~~l~~~R~Yi~~ar~~-~~~i~~e~~~~Iq~~fV~~Rq~~---- 358 (405)
+..+.+ + +. ..+..++.|++||.|||.. .+.+++++.+.+.+.||.||+.-
T Consensus 513 D~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e 592 (729)
T KOG0481|consen 513 DEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHE 592 (729)
T ss_pred ccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhh
Confidence 776542 0 00 1223679999999999974 89999999999999999999831
Q ss_pred ----C----CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 359 ----R----SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 359 ----~----~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
+ +||-++|+.++|++..+|.+..+...|..|.++|++|
T Consensus 593 ~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RL 638 (729)
T KOG0481|consen 593 QDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRL 638 (729)
T ss_pred hcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHH
Confidence 1 6999999999999999999999999999999999987
No 6
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=100.00 E-value=3.6e-34 Score=299.28 Aligned_cols=335 Identities=17% Similarity=0.135 Sum_probs=257.8
Q ss_pred cccCCCCccEEEEEE--cCCCCCcccCCEEEEEEEeecCcccccccCCCCCCccccchhhcccCCCCCcceeeEEEEEEe
Q 015536 28 TNAERNSLPCLVKIY--DCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKL 105 (405)
Q Consensus 28 ~~~p~~~~~ciVkvY--d~~~~~lklndvve~vGIl~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlHvi~~~~~ 105 (405)
.+.|.+.+|--|.|| ++..++++|||.|+|.|||.-.|.-... .... . . .-+-+.+-|+++||.
T Consensus 320 d~~p~g~tPhtv~v~~~~dLVD~v~pGDrv~VTGi~ra~p~r~np-~~r~-----v----k----Svyktyldvvh~rk~ 385 (804)
T KOG0478|consen 320 DDMPEGSTPHTVSVVLHNDLVDKVRPGDRVEVTGILRATPVRVNP-RMRM-----V----K----SVYKTYLDVVHIRKA 385 (804)
T ss_pred ccCcCCCCCceEEEEEehhhhhccCCCCeEEEEEEEEeEEeccCc-chhh-----H----H----HHHHHHhHhhhhhhh
Confidence 345778888765555 8888999999999999999876643211 1100 0 0 012344444555665
Q ss_pred cCCCccCCCCCC----------CC--CchhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccC--ceeecceee
Q 015536 106 DVNDFLHSSPMM----------EP--KPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARID--NVAVGKLSL 171 (405)
Q Consensus 106 ~~~~~~~~~~~~----------~~--~~~~~~~iR~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~d--~~~~G~~sL 171 (405)
.....-...+.+ ++ ..+..+++++.|...||+.++|+++++..|||+|||+...... |.-+|++++
T Consensus 386 s~~rl~~~d~~d~~~~~~~~~~e~i~elskrpdiy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INI 465 (804)
T KOG0478|consen 386 SMKRLEGSDERDVDEVRRIEDLEKIQELSKRPDIYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINI 465 (804)
T ss_pred hhhhccccccccccccccHHHHHHHHHHhcCccHHHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceE
Confidence 421111000000 00 1112245688899999999999999999999999999877443 467899999
Q ss_pred EeecCCCCccchhHHHHHHHHHhhcCceEEEec---chhhhhcCCCCccccCCCC--cccccceEecCCceEEEeCC-CC
Q 015536 172 NLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPL---TVNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDET-QL 245 (405)
Q Consensus 172 nl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~l---t~~~Ln~~~~~P~kD~~t~--~L~~G~LQLa~gT~lviDEt-~l 245 (405)
.|.|+|+ +.++||++++.+|+||++|+.. ++.+|++ .-.||.+|. -|++|+|+|+|||+|||||. ||
T Consensus 466 LL~GDPG----tsKSqlLqyv~~l~pRg~yTSGkGsSavGLTa---yVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM 538 (804)
T KOG0478|consen 466 LLVGDPG----TSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTA---YVTKDPDTRQLVLESGALVLSDNGICCIDEFDKM 538 (804)
T ss_pred EEecCCC----cCHHHHHHHHHHhCCcceeecCCccchhccee---eEEecCccceeeeecCcEEEcCCceEEchhhhhh
Confidence 9999998 8899999999999999999987 5777766 347999888 79999999999999999995 89
Q ss_pred CcCcccccchhHHHHHHHHHHhCcee--------------------------eeecccceeeeeccceEEeecCCCCccc
Q 015536 246 ETGTLNSTGVENARLLKNLMEFQKVE--------------------------YNFEYYKMEMIADVQMLILSEGKSNIVP 299 (405)
Q Consensus 246 ~~G~L~~~Gv~N~~aL~~li~~Q~v~--------------------------YdF~y~~~~~~~dl~~lvLS~gKS~~lp 299 (405)
.+.+ ..-||++||||+|+ |+ +...+..|+|+|..+||+
T Consensus 539 ~dSt--------rSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skyn-p~k~i~eNI~LpptLLSR------- 602 (804)
T KOG0478|consen 539 SDST--------RSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYN-PNKSIIENINLPPTLLSR------- 602 (804)
T ss_pred hHHH--------HHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCC-CCCchhhccCCChhhhhh-------
Confidence 7775 88899999999999 66 445677899999999999
Q ss_pred CceeeeeccCCCCC-------------CC--CC-Ch--hhHHHHHHHHHHhcc-CCCCCChhHHHHHHHHHHHHHhcCC-
Q 015536 300 ADLVIPFQPSSAAS-------------FE--VV-PA--ETLEAWRWYLASVRS-LPHSIESDMQKVVESDLVAARQADR- 359 (405)
Q Consensus 300 ~d~~vpl~~~~~~~-------------~~--~~-~~--~~l~~~R~Yi~~ar~-~~~~i~~e~~~~Iq~~fV~~Rq~~~- 359 (405)
||+++.+-+.++.. .+ .. .+ .+.+.+|.||.+||. ..+.+++|+++.+-..||.+|+...
T Consensus 603 FDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~ 682 (804)
T KOG0478|consen 603 FDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEG 682 (804)
T ss_pred hcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhccc
Confidence 99999886555432 11 11 11 244679999999998 4788999999999999999999652
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 015536 360 ----SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERL 399 (405)
Q Consensus 360 ----~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~LE~~ 399 (405)
.-|.++|+.+++++.++|..+..+.+...+.++|++|=++
T Consensus 683 ~~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l~R~ 726 (804)
T KOG0478|consen 683 AGQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLLRE 726 (804)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 3568999999999999999999999999999999998543
No 7
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=1.6e-32 Score=299.07 Aligned_cols=328 Identities=15% Similarity=0.107 Sum_probs=239.2
Q ss_pred EEEEEEcCCCCCcccCCEEEEEEEeecCcccccccCCCCCCccccchhhcccCCCCCcceeeEEEEEEecCC----CccC
Q 015536 37 CLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVN----DFLH 112 (405)
Q Consensus 37 ciVkvYd~~~~~lklndvve~vGIl~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlHvi~~~~~~~~----~~~~ 112 (405)
..|.+||+..+.+||||.|+|+||+...|............ .-..++-.+|+-...+.... .+..
T Consensus 348 i~v~l~dDLVD~v~PGDrV~VtGIl~~~~~~~~~~~~~~~~-----------~~~~yl~~~~i~~~~~~~~~~~~~~~~~ 416 (915)
T PTZ00111 348 INLNLYDDLIDSVKTGDRVTVVGILKVTPIRTSTTRRTLKS-----------LYTYFVNVIHVKVINSTNANQPEKGLKY 416 (915)
T ss_pred EEEEEecchhccCCCCCEEEEEEEEEecccccccccccccc-----------ccceEEEEEEEEEecccccccccccccc
Confidence 56777899999999999999999999776322110000000 00123444554432221110 0000
Q ss_pred CCCCCCCCch---------hHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhccccccc------C-----ceeecceeeE
Q 015536 113 SSPMMEPKPQ---------LVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARI------D-----NVAVGKLSLN 172 (405)
Q Consensus 113 ~~~~~~~~~~---------~~~~iR~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~------d-----~~~~G~~sLn 172 (405)
.......... .-+.+.+.|++.|++.++|++.+++.+||+|||++.... | ...+|++++.
T Consensus 417 ~~~~~~~t~ed~~~I~~ls~~p~i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVL 496 (915)
T PTZ00111 417 LGNENDFSDLQVYKILELSRNPMIYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVL 496 (915)
T ss_pred ccccccCCHHHHHHHHHHhcCHHHHHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEE
Confidence 0000000111 124567889999999999999999999999999996532 2 3458999999
Q ss_pred eecCCCCccchhHHHHHHHHHhhcCceEEEec---chhhhhcCCCCccccCCCC--cccccceEecCCceEEEeCC-CCC
Q 015536 173 LTCLSKESVSVFGNQVRLSVQNLLPFTQCIPL---TVNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDET-QLE 246 (405)
Q Consensus 173 l~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~l---t~~~Ln~~~~~P~kD~~t~--~L~~G~LQLa~gT~lviDEt-~l~ 246 (405)
|.|+|| +.++++.+++..+.||..|++. +..+|.+. .-.++..++ .+++|+|++|+||.|||||. +|.
T Consensus 497 LvGDPG----TGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~--~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms 570 (915)
T PTZ00111 497 LCGDPG----TAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTAS--IKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCH 570 (915)
T ss_pred EeCCCC----ccHHHHHHHHHHhCCccccCCCCCCccccccch--hhhcccccCcccccCCcEEEcCCCeEEecchhhCC
Confidence 999998 8899999999999999998755 34445443 222554455 68999999999999999995 677
Q ss_pred cCcccccchhHHHHHHHHHHhCceeeee-------------------------cccceeeeeccceEEeecCCCCcccCc
Q 015536 247 TGTLNSTGVENARLLKNLMEFQKVEYNF-------------------------EYYKMEMIADVQMLILSEGKSNIVPAD 301 (405)
Q Consensus 247 ~G~L~~~Gv~N~~aL~~li~~Q~v~YdF-------------------------~y~~~~~~~dl~~lvLS~gKS~~lp~d 301 (405)
+.+ ..+|+++|++|++++.. ++.++.-++++|..+||+ ||
T Consensus 571 ~~~--------Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSR-------FD 635 (915)
T PTZ00111 571 NES--------RLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTR-------FD 635 (915)
T ss_pred HHH--------HHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhh-------hc
Confidence 653 78999999999986443 344555677777777777 99
Q ss_pred eeeeeccCCCCC---------C------CC----------------------------CChhhHHHHHHHHHHhcc-CCC
Q 015536 302 LVIPFQPSSAAS---------F------EV----------------------------VPAETLEAWRWYLASVRS-LPH 337 (405)
Q Consensus 302 ~~vpl~~~~~~~---------~------~~----------------------------~~~~~l~~~R~Yi~~ar~-~~~ 337 (405)
+++.+.+.++.. . +. ..+.+.+.+|+||++||. ..|
T Consensus 636 LIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P 715 (915)
T PTZ00111 636 LIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFP 715 (915)
T ss_pred EEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCCC
Confidence 999997766542 0 00 011246889999999996 589
Q ss_pred CCChhHHHHHHHHHHHHHhcC-----------------------------CCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Q 015536 338 SIESDMQKVVESDLVAARQAD-----------------------------RSLGGQDLSRLLTMGRLMSASFGETSLSLE 388 (405)
Q Consensus 338 ~i~~e~~~~Iq~~fV~~Rq~~-----------------------------~~it~~~L~~~L~laRllA~s~g~~~lt~e 388 (405)
.|++|+.+.|++.||+||+.+ -++|.++|+.++|||.++|+.+.++.|+.+
T Consensus 716 ~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~ 795 (915)
T PTZ00111 716 KLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPA 795 (915)
T ss_pred CCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHH
Confidence 999999999999999999731 148999999999999999999999999999
Q ss_pred HHHHHHHH
Q 015536 389 HWQMVKEL 396 (405)
Q Consensus 389 ~w~~a~~L 396 (405)
|.++|++|
T Consensus 796 Dv~~Ai~L 803 (915)
T PTZ00111 796 DALQAVQI 803 (915)
T ss_pred HHHHHHHH
Confidence 99999998
No 8
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=99.98 E-value=2.6e-31 Score=273.64 Aligned_cols=321 Identities=19% Similarity=0.188 Sum_probs=238.5
Q ss_pred CCCCccEEEEEE--cCCCCCcccCCEEEEEEEeecCcccccccCCCCCCccccchhhcccCCCCCcceeeEEEEEEecCC
Q 015536 31 ERNSLPCLVKIY--DCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVN 108 (405)
Q Consensus 31 p~~~~~ciVkvY--d~~~~~lklndvve~vGIl~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlHvi~~~~~~~~ 108 (405)
|-|-.|+-|-|. |+..|.+||||.|-+|||+..-|...... . .+ .-|- ++....+.
T Consensus 207 PaGQLPRSVDvilddDLVD~~KPGDRV~ivG~yr~Lp~k~~g~----t--sg-------------~FRT-vliaNni~-- 264 (818)
T KOG0479|consen 207 PAGQLPRSVDVILDDDLVDRVKPGDRVNIVGIYRSLPGKSNGN----T--SG-------------TFRT-VLIANNIE-- 264 (818)
T ss_pred CCCCCCcceeEEecccccccCCCCCeeEEEEEEeeccCccCCc----c--cc-------------eeEE-EEEeccHH--
Confidence 447778888888 56678999999999999998766532110 0 00 1110 11111111
Q ss_pred CccCCC--CCCCC-------CchhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhccccc--ccCceeecceeeEeecCC
Q 015536 109 DFLHSS--PMMEP-------KPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHA--RIDNVAVGKLSLNLTCLS 177 (405)
Q Consensus 109 ~~~~~~--~~~~~-------~~~~~~~iR~~li~~La~~l~GD~laAeyLLL~L~s~V~~--r~d~~~~G~~sLnl~~~p 177 (405)
+++.. |..+. ..+..+++-+.|-..||++++|+.-+++++||.|+|+|.. +.++-.+|++++.++|+|
T Consensus 265 -~l~ke~~~~~t~~Di~~i~klsk~kdiFdlLa~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDP 343 (818)
T KOG0479|consen 265 -LLSKEAAPDFTDEDIRNIKKLSKKKDIFDLLARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDP 343 (818)
T ss_pred -hhcccccccCChhhHHHHHHHHhcCCHHHHHhhccCcccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCc
Confidence 00110 11000 1111233456677777899999999999999999999987 334466899999999999
Q ss_pred CCccchhHHHHHHHHHhhcCceEEEec---chhhhhcCCCCccccCCCC--cccccceEecCCceEEEeCC-CCCcCccc
Q 015536 178 KESVSVFGNQVRLSVQNLLPFTQCIPL---TVNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDET-QLETGTLN 251 (405)
Q Consensus 178 ~~~~~~~~~~L~~~l~~l~P~~~~l~l---t~~~Ln~~~~~P~kD~~t~--~L~~G~LQLa~gT~lviDEt-~l~~G~L~ 251 (405)
. ++++||+.++-+.+|+...++. +--+|+++. .-|.+|| ||++|+++|||.|++||||. ||+.+.
T Consensus 344 S----vAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAV---TtD~eTGERRLEAGAMVLADRGVVCIDEFDKMsDiD-- 414 (818)
T KOG0479|consen 344 S----VAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAV---TTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDID-- 414 (818)
T ss_pred h----HHHHHHHHHHHhcccccccccCCCCCCccceeEE---eeccccchhhhhcCceEEccCceEEehhcccccchh--
Confidence 6 9999999999999999988865 234455533 4677787 99999999999999999995 999984
Q ss_pred ccchhHHHHHHHHHHhCceeeeecc-------------------------cceeeeeccceEEeecCCCCcccCceeeee
Q 015536 252 STGVENARLLKNLMEFQKVEYNFEY-------------------------YKMEMIADVQMLILSEGKSNIVPADLVIPF 306 (405)
Q Consensus 252 ~~Gv~N~~aL~~li~~Q~v~YdF~y-------------------------~~~~~~~dl~~lvLS~gKS~~lp~d~~vpl 306 (405)
+.|||++|+||+|.....+ .+=.-|+-+|=-+||+ ||+.|.+
T Consensus 415 ------RvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSR-------FDLlFv~ 481 (818)
T KOG0479|consen 415 ------RVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSR-------FDLLFVV 481 (818)
T ss_pred ------HHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhh-------hcEEEEE
Confidence 9999999999999944443 3333466667777777 9999987
Q ss_pred ccCCCCC--------------------------CC----------C------------C-----------Ch--hhHHHH
Q 015536 307 QPSSAAS--------------------------FE----------V------------V-----------PA--ETLEAW 325 (405)
Q Consensus 307 ~~~~~~~--------------------------~~----------~------------~-----------~~--~~l~~~ 325 (405)
-++.+.. +. . + .+ -.++.+
T Consensus 482 lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~~~~k~lti~F~ 561 (818)
T KOG0479|consen 482 LDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQQHEKLLTIDFM 561 (818)
T ss_pred eccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhccccccccceeeHHHH
Confidence 5554321 00 0 0 00 012448
Q ss_pred HHHHHHhcc-CCCCCChhHHHHHHHHHHHHHhcCC--------CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 326 RWYLASVRS-LPHSIESDMQKVVESDLVAARQADR--------SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 326 R~Yi~~ar~-~~~~i~~e~~~~Iq~~fV~~Rq~~~--------~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
|+||.+||+ ..|.+++|+.++|.+.|-..|+++. +||+++|+.++|||-+.|..+.+..|+++|.+.|.+|
T Consensus 562 rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~L 641 (818)
T KOG0479|consen 562 RKYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNL 641 (818)
T ss_pred HHHHHHHHhhcCccccHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHH
Confidence 999999998 7899999999999999999999764 6999999999999999999999999999999999988
No 9
>PF13615 Racemase_4: Putative alanine racemase
Probab=99.97 E-value=6.2e-32 Score=226.85 Aligned_cols=102 Identities=50% Similarity=0.758 Sum_probs=99.3
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhc
Q 015536 132 LRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNT 211 (405)
Q Consensus 132 i~~La~~l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~ 211 (405)
+++|+++|+||.+||||+||||||+||+|++++++|+|+||++|+|.+..+.+.++|++++++++|+++++|||+++||+
T Consensus 1 l~~L~~~L~gD~LAAEylLlhLlS~v~~r~~~~~lG~~sLNl~~~~~~~~~~~~~~l~~~l~~l~P~~~~lpltl~~LN~ 80 (102)
T PF13615_consen 1 LDYLTQALGGDELAAEYLLLHLLSRVYSRTDSLPLGKFSLNLSNCPKSSLSSFASQLYSVLSQLVPRSHYLPLTLENLNS 80 (102)
T ss_pred ChHHHHHhcCCHHHHHHHHHHHhCceEeccCCccccccceeeecCCcchhhHHHHHHHHHHHHhhhheEEEeccHHHhcc
Confidence 47899999999999999999999999999999999999999999999887889999999999999999999999999999
Q ss_pred CCCCccccCCCCcccccceEec
Q 015536 212 ASLAPKKDYQTNRLIPGVLQLA 233 (405)
Q Consensus 212 ~~~~P~kD~~t~~L~~G~LQLa 233 (405)
.+|+|+|||++|+|++|+||||
T Consensus 81 ~~~~P~kd~~~~rL~sG~LQLa 102 (102)
T PF13615_consen 81 LRFVPKKDYETNRLVSGVLQLA 102 (102)
T ss_pred CCccccccCccCcCccccCCCC
Confidence 9999999999999999999997
No 10
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.97 E-value=9e-29 Score=260.52 Aligned_cols=339 Identities=17% Similarity=0.146 Sum_probs=243.9
Q ss_pred ccCCCCccEEEEEE--cCCCCCcccCCEEEEEEEeecCcccccccCCCCCCccccchhhcccCCCCCcceeeEEEEEEec
Q 015536 29 NAERNSLPCLVKIY--DCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLD 106 (405)
Q Consensus 29 ~~p~~~~~ciVkvY--d~~~~~lklndvve~vGIl~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlHvi~~~~~~ 106 (405)
++|.+.+|..+.|+ |+..+.++|||.|.++||+...|......... .+ +.+...+++.+.++..
T Consensus 96 ~~p~G~~Prsi~v~l~~dLvd~~~PGD~V~i~Gi~~~~~~~~~~~~~~-----~~---------~~~~~~l~a~~i~~~~ 161 (509)
T smart00350 96 EVPAGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNIPYGFKLNTVK-----GL---------PVFATYIEANHVRKLD 161 (509)
T ss_pred cCCCCCCCcEEEEEEcccccCcccCCCEEEEEEEEEeeccccccccCC-----Cc---------ceeeEEEEEeEEEEcc
Confidence 35678888865554 88888999999999999998765211000000 00 0123456666666553
Q ss_pred CC-CccCCC-CCCCCCchh---------HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhccccccc-Cc-eeecceeeEe
Q 015536 107 VN-DFLHSS-PMMEPKPQL---------VKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARI-DN-VAVGKLSLNL 173 (405)
Q Consensus 107 ~~-~~~~~~-~~~~~~~~~---------~~~iR~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~-d~-~~~G~~sLnl 173 (405)
.. .+.... ......... -+.+.+.|++.|++.++|+..++..++|.|++++.... +| ..+|+.++.|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL 241 (509)
T smart00350 162 YKRSFEDCSFSVQSLSDEEEEEIRKLSKDPDIYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILL 241 (509)
T ss_pred ccccccccccccccCCHHHHHHHHHHhcCHHHHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEE
Confidence 21 111000 000001111 13456889999999999999999999999999986633 44 5589999999
Q ss_pred ecCCCCccchhHHHHHHHHHhhcCceEEEec---chhhhhcCCCCccccCCCC--cccccceEecCCceEEEeCC-CCCc
Q 015536 174 TCLSKESVSVFGNQVRLSVQNLLPFTQCIPL---TVNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDET-QLET 247 (405)
Q Consensus 174 ~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~l---t~~~Ln~~~~~P~kD~~t~--~L~~G~LQLa~gT~lviDEt-~l~~ 247 (405)
.|+|| +.++++.+++..+.|+..|++. +..+|.. .+.+|..++ .+++|+|.+|+||.|+|||. +|..
T Consensus 242 ~G~pG----tGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~---~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~ 314 (509)
T smart00350 242 LGDPG----TAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA---AVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDD 314 (509)
T ss_pred eCCCC----hhHHHHHHHHHHHcCcceEcCCCCCCcCCccc---cceEccCcceEEecCccEEecCCCEEEEechhhCCH
Confidence 99998 8899999999999999998874 3333433 334665555 68999999999999999995 6765
Q ss_pred CcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCCC------------cc------cCceeeeeccC
Q 015536 248 GTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSN------------IV------PADLVIPFQPS 309 (405)
Q Consensus 248 G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~------------~l------p~d~~vpl~~~ 309 (405)
. ...+|+++|++|++.+........++.+..++..+.-+-- -+ -||+++.+.+.
T Consensus 315 ~--------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~ 386 (509)
T smart00350 315 S--------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDE 386 (509)
T ss_pred H--------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCC
Confidence 5 3899999999999987655555555554444444321100 01 19999999766
Q ss_pred CCCCC-----------C------CC----ChhhHHHHHHHHHHhcc-CCCCCChhHHHHHHHHHHHHHhcC--------C
Q 015536 310 SAASF-----------E------VV----PAETLEAWRWYLASVRS-LPHSIESDMQKVVESDLVAARQAD--------R 359 (405)
Q Consensus 310 ~~~~~-----------~------~~----~~~~l~~~R~Yi~~ar~-~~~~i~~e~~~~Iq~~fV~~Rq~~--------~ 359 (405)
++.+. . .. ...+.+.+|+||++||. ..+.+++++.++|.+.|+++|+.. -
T Consensus 387 ~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~ 466 (509)
T smart00350 387 VDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSI 466 (509)
T ss_pred CChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccccccccccc
Confidence 55420 0 00 12346899999999998 688999999999999999999843 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 360 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 360 ~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
.+|.+.|..++++|+++|+.+|++.|+.+|.+.|++|
T Consensus 467 ~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l 503 (509)
T smart00350 467 PITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRL 503 (509)
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 5899999999999999999999999999999999988
No 11
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.97 E-value=1.4e-32 Score=275.00 Aligned_cols=250 Identities=17% Similarity=0.154 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHhccccccc-C-ceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEe
Q 015536 126 ETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARI-D-NVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIP 203 (405)
Q Consensus 126 ~iR~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~-d-~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~ 203 (405)
.+++.|+++|++.++|+..++..+||+|+|++.... + +..+|++++.|+|+|+ +.+++|++++.+++|+++|+.
T Consensus 13 ~~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg----~gKS~ll~~~~~~~pr~v~~~ 88 (331)
T PF00493_consen 13 NIFDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPG----TGKSQLLKYVAKLAPRSVYTS 88 (331)
T ss_dssp THHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCH----HCHHHHHHCCCCT-SSEEEEE
T ss_pred cHHHHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchh----hhHHHHHHHHHhhCCceEEEC
Confidence 578999999999999999999999999999998743 3 5779999999999998 899999999999999999997
Q ss_pred c---chhhhhcCCCCccccCCCC--cccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeeccc
Q 015536 204 L---TVNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYY 277 (405)
Q Consensus 204 l---t~~~Ln~~~~~P~kD~~t~--~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~ 277 (405)
. |..+|+. +..||..++ .|++|+|.|||||+|||||. +|.+. ...+|+++|++|+|+......
T Consensus 89 g~~~s~~gLta---~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~--------~~~~l~eaMEqq~isi~kagi 157 (331)
T PF00493_consen 89 GKGSSAAGLTA---SVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKED--------DRDALHEAMEQQTISIAKAGI 157 (331)
T ss_dssp CCGSTCCCCCE---EECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CH--------HHHHHHHHHHCSCEEECTSSS
T ss_pred CCCcccCCccc---eeccccccceeEEeCCchhcccCceeeecccccccch--------HHHHHHHHHHcCeeccchhhh
Confidence 6 4566655 345776555 89999999999999999994 78776 499999999999999655544
Q ss_pred ceee-------------------------eeccceEEeecCCCCcccCceeeeeccCCCCC-----------C-CCC---
Q 015536 278 KMEM-------------------------IADVQMLILSEGKSNIVPADLVIPFQPSSAAS-----------F-EVV--- 317 (405)
Q Consensus 278 ~~~~-------------------------~~dl~~lvLS~gKS~~lp~d~~vpl~~~~~~~-----------~-~~~--- 317 (405)
...+ ++++|.-+||+ ||++|.+.+..+.+ . ...
T Consensus 158 ~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSR-------FDLif~l~D~~d~~~D~~la~~il~~~~~~~~~ 230 (331)
T PF00493_consen 158 VTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSR-------FDLIFLLRDKPDEEEDERLAEHILDSHRNGKKS 230 (331)
T ss_dssp EEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC--------SEEECC--TTT-HHHHHHHHHHHTTT---S--
T ss_pred cccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhh-------cCEEEEeccccccccccccceEEEecccccccc
Confidence 4444 44555555555 99999998776642 0 000
Q ss_pred ---------ChhhHHHHHHHHHHhc-cCCCCCChhHHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHcC
Q 015536 318 ---------PAETLEAWRWYLASVR-SLPHSIESDMQKVVESDLVAARQAD------RSLGGQDLSRLLTMGRLMSASFG 381 (405)
Q Consensus 318 ---------~~~~l~~~R~Yi~~ar-~~~~~i~~e~~~~Iq~~fV~~Rq~~------~~it~~~L~~~L~laRllA~s~g 381 (405)
..-..+.+|+||++|| ...|.+++|+.++|.+.||++|+.. -.+|.+.|..++|||.++|+.++
T Consensus 231 ~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~l 310 (331)
T PF00493_consen 231 KEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRL 310 (331)
T ss_dssp ------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTT
T ss_pred ccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhc
Confidence 1234578999999999 6899999999999999999999966 26999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 015536 382 ETSLSLEHWQMVKELE 397 (405)
Q Consensus 382 ~~~lt~e~w~~a~~LE 397 (405)
+++|+.+|...|++|=
T Consensus 311 r~~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 311 RDEVTEEDVEEAIRLF 326 (331)
T ss_dssp SSECSHHHHHHHHHHH
T ss_pred cCceeHHHHHHHHHHH
Confidence 9999999999999983
No 12
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=99.97 E-value=7.1e-30 Score=264.57 Aligned_cols=327 Identities=16% Similarity=0.113 Sum_probs=247.6
Q ss_pred CCccEEE--EEEcCCCCCcccCCEEEEEEEeecCcccccccCCCCCCccccchhhcccCCCCCcceeeEEEEEEecCCCc
Q 015536 33 NSLPCLV--KIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVNDF 110 (405)
Q Consensus 33 ~~~~ciV--kvYd~~~~~lklndvve~vGIl~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlHvi~~~~~~~~~~ 110 (405)
+..|+-. -+.++..+..||||-||+.||+...=..+.+ .++ +| |-..+.+++.+.++-.. .+
T Consensus 354 GrlPRsk~vILl~DLvD~~kpGdEievTGIy~nn~d~sLN--~kn----gF---------pvfatvi~ANhV~~k~~-~~ 417 (854)
T KOG0477|consen 354 GRLPRSKEVILLADLVDSCKPGDEIEVTGIYTNNFDGSLN--TKN----GF---------PVFATVIEANHVVKKDG-KF 417 (854)
T ss_pred CccccchhheehhhhhhhcCCCcceEEeeeeccccccccc--ccC----Cc---------cccceeheehhhhhhcc-cc
Confidence 6666643 3335668899999999999999754111111 010 11 11244455544444331 01
Q ss_pred cCCCCCCCC-----CchhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCc--eeecceeeEeecCCCCccch
Q 015536 111 LHSSPMMEP-----KPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDN--VAVGKLSLNLTCLSKESVSV 183 (405)
Q Consensus 111 ~~~~~~~~~-----~~~~~~~iR~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~d~--~~~G~~sLnl~~~p~~~~~~ 183 (405)
....-..+. ..+....|-+.++..|++.++|+.+++-++.|.|+++|.+-..+ ..+|++++.|.|+|| +
T Consensus 418 ~~~~ltded~k~i~~lskd~~i~~rIiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPG----T 493 (854)
T KOG0477|consen 418 DVDELTDEDFKEIWELSKDPPIKERIIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPG----T 493 (854)
T ss_pred chhHHhHHHHHHHHHHhcCccHHHHHHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCC----c
Confidence 101000000 01112334567999999999999999999999999999887754 668999999999999 9
Q ss_pred hHHHHHHHHHhhcCceEEEec---chhhhhcCCCCccccCCCC--cccccceEecCCceEEEeCC-CCCcCcccccchhH
Q 015536 184 FGNQVRLSVQNLLPFTQCIPL---TVNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDET-QLETGTLNSTGVEN 257 (405)
Q Consensus 184 ~~~~L~~~l~~l~P~~~~l~l---t~~~Ln~~~~~P~kD~~t~--~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N 257 (405)
+++|++++.+.+.||+++++. |..+|++ .-.||+.++ .|++|+|+|||+|+|+|||. ||.+- +
T Consensus 494 aKSQFLKY~eK~s~RAV~tTGqGASavGLTa---~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndq--------D 562 (854)
T KOG0477|consen 494 AKSQFLKYAEKTSPRAVFTTGQGASAVGLTA---YVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQ--------D 562 (854)
T ss_pred cHHHHHHHHHhcCcceeEeccCCccccceeE---EEeeCCccceeeeccCeEEEccCceEEeehhhhhccc--------c
Confidence 999999999999999999976 6777776 337998887 89999999999999999995 78776 5
Q ss_pred HHHHHHHHHhCceeeee-------------------------cccceeeeeccceEEeecCCCCcccCceeeeeccCCCC
Q 015536 258 ARLLKNLMEFQKVEYNF-------------------------EYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAA 312 (405)
Q Consensus 258 ~~aL~~li~~Q~v~YdF-------------------------~y~~~~~~~dl~~lvLS~gKS~~lp~d~~vpl~~~~~~ 312 (405)
+++||++|+||.++... +-.++.-|+|+.=-|||+ ||+...+++.-++
T Consensus 563 RtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSR-------FDiLcVvkD~vd~ 635 (854)
T KOG0477|consen 563 RTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSR-------FDILCVVKDTVDP 635 (854)
T ss_pred cchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhh-------cceeeeeecccCc
Confidence 99999999999999333 446777788999999999 9999988876554
Q ss_pred C-----------------CCC-----C---------ChhhHHHHHHHHHHhccC-CCCCChhHHHHHHHHHHHHHhcCC-
Q 015536 313 S-----------------FEV-----V---------PAETLEAWRWYLASVRSL-PHSIESDMQKVVESDLVAARQADR- 359 (405)
Q Consensus 313 ~-----------------~~~-----~---------~~~~l~~~R~Yi~~ar~~-~~~i~~e~~~~Iq~~fV~~Rq~~~- 359 (405)
. +.. . .+..-+.+|+||.+||.. -+.+.+--++.|..=|+.+||+.-
T Consensus 636 ~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~ 715 (854)
T KOG0477|consen 636 VQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMA 715 (854)
T ss_pred hhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccc
Confidence 2 000 0 112237899999999975 678887777889999999999764
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 015536 360 ----SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELE 397 (405)
Q Consensus 360 ----~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~LE 397 (405)
+||.+-++.+++++++.|+++.+..++.+|.+.|++..
T Consensus 716 tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ 757 (854)
T KOG0477|consen 716 TGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVM 757 (854)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHH
Confidence 58999999999999999999999999999999998864
No 13
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.92 E-value=6.8e-08 Score=105.04 Aligned_cols=230 Identities=16% Similarity=0.149 Sum_probs=160.9
Q ss_pred hhcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceE-----------------
Q 015536 138 ILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ----------------- 200 (405)
Q Consensus 138 ~l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~----------------- 200 (405)
.+.|...++..|++.++.. + +| ++.|.|.+| +.++.|.+.|..++|...
T Consensus 5 ~ivGq~~~~~al~~~av~~---~-----~g--~vli~G~~G----tgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~ 70 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVDP---R-----IG--GVLIRGEKG----TAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEW 70 (633)
T ss_pred hhcChHHHHHHHHHHhhCC---C-----CC--eEEEEcCCC----CcHHHHHHHHHHhCCCceeccCCcCCCCCCCcccc
Confidence 3567888899998888764 1 12 389999998 789999999999997321
Q ss_pred -------------------EEecchhhhhcCCCCccccC----CCC--cccccceEecCCceEEEeCC-CCCcCcccccc
Q 015536 201 -------------------CIPLTVNYLNTASLAPKKDY----QTN--RLIPGVLQLADGSHLIIDET-QLETGTLNSTG 254 (405)
Q Consensus 201 -------------------~l~lt~~~Ln~~~~~P~kD~----~t~--~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~G 254 (405)
.+|+++. ...+.-..|. .++ .+..|.|..|+||+|+|||- .|....
T Consensus 71 ~~~~~~~~~~~~~~~~pfv~~p~~~t---~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~----- 142 (633)
T TIGR02442 71 CEECRRKYRPSEQRPVPFVNLPLGAT---EDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHL----- 142 (633)
T ss_pred ChhhhhcccccccCCCCeeeCCCCCc---HHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHH-----
Confidence 1222110 0011111111 112 46799999999999999996 576654
Q ss_pred hhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCCCccc------CceeeeeccCCCCCC---------C-CCC
Q 015536 255 VENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVP------ADLVIPFQPSSAASF---------E-VVP 318 (405)
Q Consensus 255 v~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~~lp------~d~~vpl~~~~~~~~---------~-~~~ 318 (405)
..+|.++|+.+++.+.-......+++++.++..+.-....++ +++.|.+.+....+. . ...
T Consensus 143 ---q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~ 219 (633)
T TIGR02442 143 ---VDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDAD 219 (633)
T ss_pred ---HHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccC
Confidence 889999999999988877778888888877775432211222 566666554332210 0 001
Q ss_pred h--------hhHHHHHHHHHHhccC--CCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Q 015536 319 A--------ETLEAWRWYLASVRSL--PHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLE 388 (405)
Q Consensus 319 ~--------~~l~~~R~Yi~~ar~~--~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e 388 (405)
+ .+...++++|..+|.. .+.|++++.++|.+-+++.+-. +.+-...++++||++|...|++.|+.+
T Consensus 220 ~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~----s~Ra~i~~~r~Ara~AaL~gr~~V~~~ 295 (633)
T TIGR02442 220 PEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVD----GHRADIVMARAARALAALDGRRRVTAE 295 (633)
T ss_pred cHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC----CccHHHHHHHHHHHHHHHcCCCcCCHH
Confidence 1 1223677899999874 4689999999999999887532 468888999999999999999999999
Q ss_pred HHHHHHHH
Q 015536 389 HWQMVKEL 396 (405)
Q Consensus 389 ~w~~a~~L 396 (405)
|.+.|.+|
T Consensus 296 Dv~~A~~l 303 (633)
T TIGR02442 296 DVREAAEL 303 (633)
T ss_pred HHHHHHHH
Confidence 99999887
No 14
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.75 E-value=2.5e-07 Score=99.87 Aligned_cols=225 Identities=16% Similarity=0.165 Sum_probs=155.0
Q ss_pred HHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCce---EEEec--chhhhhcCCCCcccc
Q 015536 145 AAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT---QCIPL--TVNYLNTASLAPKKD 219 (405)
Q Consensus 145 aAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~---~~l~l--t~~~Ln~~~~~P~kD 219 (405)
++.+|+|..+.- . +| +|.|.|.|| +.++.|.+.|..+.|+. +.+|. |.+.|-... --...
T Consensus 3 ~~~Al~l~av~p-------~-~g--~vLl~G~~G----tgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i-dl~~~ 67 (589)
T TIGR02031 3 AKLALTLLAVDP-------S-LG--GVAIRARAG----TGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI-DVEES 67 (589)
T ss_pred HHHHHHHhccCC-------C-cc--eEEEEcCCC----cHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch-hhhhh
Confidence 456666655442 1 22 688999998 88999999999999874 33443 222221100 00000
Q ss_pred CCCC--cccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCC-
Q 015536 220 YQTN--RLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS- 295 (405)
Q Consensus 220 ~~t~--~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS- 295 (405)
..++ .++.|.|..++||+|+|||- .|.... ..+|.++|+.+.|.++=.......++++.++..+....
T Consensus 68 ~~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~--------q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~ 139 (589)
T TIGR02031 68 LAGGQRVTQPGLLDEAPRGVLYVDMANLLDDGL--------SNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEG 139 (589)
T ss_pred hhcCcccCCCCCeeeCCCCcEeccchhhCCHHH--------HHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccc
Confidence 1123 47899999999999999996 566653 78999999999998886677788888888887665432
Q ss_pred -Cccc------CceeeeeccCCCCCC---------C---CCChhhHHHHHHHHHHhccC--CCCCChhHHHHHHHHHHHH
Q 015536 296 -NIVP------ADLVIPFQPSSAASF---------E---VVPAETLEAWRWYLASVRSL--PHSIESDMQKVVESDLVAA 354 (405)
Q Consensus 296 -~~lp------~d~~vpl~~~~~~~~---------~---~~~~~~l~~~R~Yi~~ar~~--~~~i~~e~~~~Iq~~fV~~ 354 (405)
--+| +++.|.+...+.... . .....+....+.+|..+|.. .+.+++++.++|.+..+++
T Consensus 140 ~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~ 219 (589)
T TIGR02031 140 GGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASL 219 (589)
T ss_pred cCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHc
Confidence 1122 444444432221110 0 00112345778889999864 5789999999999988776
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 355 RQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 355 Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
+-. +.+-...+++.||++|+..|++.|+.||.++|..|
T Consensus 220 gv~----s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~l 257 (589)
T TIGR02031 220 GIS----GHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVEL 257 (589)
T ss_pred CCC----CccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 542 35777789999999999999999999999999887
No 15
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.51 E-value=2.3e-06 Score=90.74 Aligned_cols=229 Identities=16% Similarity=0.146 Sum_probs=145.5
Q ss_pred hcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceE---EEec----chhh---
Q 015536 139 LGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ---CIPL----TVNY--- 208 (405)
Q Consensus 139 l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~---~l~l----t~~~--- 208 (405)
+.|...+.+.+-+... |.-++-|.|.|| +-++.|.+.+..++|... .+-. ++.+
T Consensus 194 v~Gq~~~~~al~~aa~------------~g~~vlliG~pG----sGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~ 257 (499)
T TIGR00368 194 IKGQQHAKRALEIAAA------------GGHNLLLFGPPG----SGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLI 257 (499)
T ss_pred hcCcHHHHhhhhhhcc------------CCCEEEEEecCC----CCHHHHHHHHhcccCCCCCcEEEeccccccchhhhc
Confidence 3466666666655442 445789999998 568899999998887632 1111 1111
Q ss_pred ----hhcCCCC-cccc----CC-CC--cccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeec
Q 015536 209 ----LNTASLA-PKKD----YQ-TN--RLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFE 275 (405)
Q Consensus 209 ----Ln~~~~~-P~kD----~~-t~--~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~ 275 (405)
....+|. |.-- .. .+ ...+|.+.+|+||+|+|||- .|... -...|.++|+.+.+.+.=.
T Consensus 258 ~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~--------~~~~L~~~LE~~~v~i~r~ 329 (499)
T TIGR00368 258 DRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRS--------VLDALREPIEDGSISISRA 329 (499)
T ss_pred cccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHH--------HHHHHHHHHHcCcEEEEec
Confidence 1122221 1100 00 01 36788999999999999996 55543 3789999999999887755
Q ss_pred ccceeeeeccceEEeecCCC--C--------------------------cccCceeeeeccCCCCCCCC-CChhhHHHHH
Q 015536 276 YYKMEMIADVQMLILSEGKS--N--------------------------IVPADLVIPFQPSSAASFEV-VPAETLEAWR 326 (405)
Q Consensus 276 y~~~~~~~dl~~lvLS~gKS--~--------------------------~lp~d~~vpl~~~~~~~~~~-~~~~~l~~~R 326 (405)
.....++.+..++.-+.... . +=-+|+.+.+.+....+... ...+.-..+|
T Consensus 330 g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir 409 (499)
T TIGR00368 330 SAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVK 409 (499)
T ss_pred CcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHH
Confidence 66677788877777665321 0 01178888776554322111 1112234555
Q ss_pred HHHHHhccC-------------C-----------CCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC
Q 015536 327 WYLASVRSL-------------P-----------HSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGE 382 (405)
Q Consensus 327 ~Yi~~ar~~-------------~-----------~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~ 382 (405)
.=+..||.. + ..++++..+.+++.|- ...+|.+..|++|++||.+|-..|.
T Consensus 410 ~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~-----~~~lS~R~~~rilrvArTiAdL~g~ 484 (499)
T TIGR00368 410 QRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALN-----KLGLSSRATHRILKVARTIADLKEE 484 (499)
T ss_pred HHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHH-----hcCCCchHHHHHHHHHHHHHhhcCC
Confidence 555555321 1 1235555555555442 2248999999999999999999999
Q ss_pred CCCCHHHHHHHHHH
Q 015536 383 TSLSLEHWQMVKEL 396 (405)
Q Consensus 383 ~~lt~e~w~~a~~L 396 (405)
+.++.+|..+|+++
T Consensus 485 ~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 485 KNISREHLAEAIEY 498 (499)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999864
No 16
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.46 E-value=7.2e-06 Score=82.92 Aligned_cols=232 Identities=15% Similarity=0.144 Sum_probs=150.1
Q ss_pred hhcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEe---cc---------
Q 015536 138 ILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIP---LT--------- 205 (405)
Q Consensus 138 ~l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~---lt--------- 205 (405)
.+-|.+.++..|++.+++-. +| ++.|.|.|| +.|+.|.+.+..+.|....+- ..
T Consensus 5 ~ivgq~~~~~al~~~~~~~~--------~g--~vli~G~~G----~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPK--------IG--GVMVMGDRG----TGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMM 70 (337)
T ss_pred ccccHHHHHHHHHHHhcCCC--------CC--eEEEEcCCC----CCHHHHHHHHHHhhcccccccCCCCCCCCCCcccc
Confidence 34589999999999998741 23 467999998 779999999999998633221 10
Q ss_pred -----h--------hhhh-cCCC--Ccc----------ccC----CCC--cccccceEecCCceEEEeCC-CCCcCcccc
Q 015536 206 -----V--------NYLN-TASL--APK----------KDY----QTN--RLIPGVLQLADGSHLIIDET-QLETGTLNS 252 (405)
Q Consensus 206 -----~--------~~Ln-~~~~--~P~----------kD~----~t~--~L~~G~LQLa~gT~lviDEt-~l~~G~L~~ 252 (405)
. ..+- ..+| .|. -|+ .++ .+..|.|.-|+||+|+|||- .|...
T Consensus 71 ~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~---- 146 (337)
T TIGR02030 71 CEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDH---- 146 (337)
T ss_pred ChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHH----
Confidence 0 0000 0000 111 011 022 46889999999999999996 56554
Q ss_pred cchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCC--Cccc------CceeeeeccCCCCC--C------CC
Q 015536 253 TGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS--NIVP------ADLVIPFQPSSAAS--F------EV 316 (405)
Q Consensus 253 ~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS--~~lp------~d~~vpl~~~~~~~--~------~~ 316 (405)
-..+|-++|+.+.+.|.=...+ ...+.++++++..-- .-+| +.+.+.+....... . ..
T Consensus 147 ----~Q~~Ll~~l~~g~~~v~r~G~~--~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~ 220 (337)
T TIGR02030 147 ----LVDVLLDVAASGWNVVEREGIS--IRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTE 220 (337)
T ss_pred ----HHHHHHHHHHhCCeEEEECCEE--EEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhh
Confidence 2678899999887766544443 345567777776421 1122 33444333222100 0 00
Q ss_pred C--Ch-h-------hHHHHHHHHHHhcc--CCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCC
Q 015536 317 V--PA-E-------TLEAWRWYLASVRS--LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETS 384 (405)
Q Consensus 317 ~--~~-~-------~l~~~R~Yi~~ar~--~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~ 384 (405)
. .+ . +-...+.-|..+|. ....+++++.+||.+-..+.|-. +.+--..+++.||++|...|++.
T Consensus 221 ~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~----s~Ra~i~l~raArA~Aal~GR~~ 296 (337)
T TIGR02030 221 YDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVD----GLRGELTLNRAAKALAAFEGRTE 296 (337)
T ss_pred cccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCC----CCcHHHHHHHHHHHHHHHcCCCC
Confidence 0 00 0 11244667777776 36789999999999988877732 45778889999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 015536 385 LSLEHWQMVKELE 397 (405)
Q Consensus 385 lt~e~w~~a~~LE 397 (405)
|+.+|.+.+..+=
T Consensus 297 V~~dDv~~~a~~v 309 (337)
T TIGR02030 297 VTVDDIRRVAVLA 309 (337)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988764
No 17
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.45 E-value=2.3e-05 Score=79.24 Aligned_cols=230 Identities=16% Similarity=0.160 Sum_probs=143.7
Q ss_pred hcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecc------hhh---h
Q 015536 139 LGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLT------VNY---L 209 (405)
Q Consensus 139 l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt------~~~---L 209 (405)
+-|...+.+.|++.++.. |--++.|.|.|| +.|+.+.+.+..++|.-...... +.. +
T Consensus 10 i~Gq~~~~~~l~~~~~~~----------~~~~vLl~G~pG----~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~ 75 (334)
T PRK13407 10 IVGQEEMKQAMVLTAIDP----------GIGGVLVFGDRG----TGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEW 75 (334)
T ss_pred hCCHHHHHHHHHHHHhcc----------CCCcEEEEcCCC----CCHHHHHHHHHHHCCCcchhcccccccCcccCCccc
Confidence 457888889888877632 334699999998 78999999999999863322110 000 0
Q ss_pred ----hcC---CCCccc---------------cCC----CC--cccccceEecCCceEEEeCC-CCCcCcccccchhHHHH
Q 015536 210 ----NTA---SLAPKK---------------DYQ----TN--RLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARL 260 (405)
Q Consensus 210 ----n~~---~~~P~k---------------D~~----t~--~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~a 260 (405)
... ...|.. |++ +| .+..|.|..++||+|+|||- .+... -..+
T Consensus 76 ~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~--------~q~~ 147 (334)
T PRK13407 76 AHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH--------IVDL 147 (334)
T ss_pred ccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH--------HHHH
Confidence 000 001111 111 12 48899999999999999996 45554 3789
Q ss_pred HHHHHHhCceeeeecccceeeeeccceEEeecCCC--Cccc------CceeeeeccCCCCC-----C---CCC--Chh--
Q 015536 261 LKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS--NIVP------ADLVIPFQPSSAAS-----F---EVV--PAE-- 320 (405)
Q Consensus 261 L~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS--~~lp------~d~~vpl~~~~~~~-----~---~~~--~~~-- 320 (405)
|.++|+.+.+.+.-...+..++ .++++++..-. .-+| |.+.+.+.+..... . ... .+.
T Consensus 148 Lle~mee~~v~v~r~G~~~~~p--~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~ 225 (334)
T PRK13407 148 LLDVAQSGENVVEREGLSIRHP--ARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAF 225 (334)
T ss_pred HHHHHHcCCeEEEECCeEEecC--CCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhh
Confidence 9999999987776555554444 46666655321 1122 34444443222110 0 000 000
Q ss_pred ------hHHHHHHHHHHhcc--CCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 015536 321 ------TLEAWRWYLASVRS--LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQM 392 (405)
Q Consensus 321 ------~l~~~R~Yi~~ar~--~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~ 392 (405)
+-...+.-|..+|. ..+.+++++.+||.+--.+.|... . --++. +++.||++|...|++.|+.||.+.
T Consensus 226 ~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s--~-Ra~i~-l~~aA~a~A~l~Gr~~V~~~Di~~ 301 (334)
T PRK13407 226 MAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDG--L-RGELT-LLRAARALAAFEGAEAVGRSHLRS 301 (334)
T ss_pred hccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCC--c-hHHHH-HHHHHHHHHHHcCCCeeCHHHHHH
Confidence 00123344555554 357899999999998887777643 1 23333 999999999999999999999987
Q ss_pred HHHH
Q 015536 393 VKEL 396 (405)
Q Consensus 393 a~~L 396 (405)
+..+
T Consensus 302 ~~~~ 305 (334)
T PRK13407 302 VATM 305 (334)
T ss_pred HHHH
Confidence 7643
No 18
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.38 E-value=6.2e-06 Score=87.42 Aligned_cols=214 Identities=17% Similarity=0.196 Sum_probs=133.7
Q ss_pred cceeeEeecCCCCccchhHHHHHHHHHhhcCceE---EEecc----hhhh-------hcCCC-CccccCC------CC-c
Q 015536 167 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ---CIPLT----VNYL-------NTASL-APKKDYQ------TN-R 224 (405)
Q Consensus 167 G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~---~l~lt----~~~L-------n~~~~-~P~kD~~------t~-~ 224 (405)
|.-++-|.|.|+ .-++.|.+.|..+.|... .+..| +.++ ...+| .|+-.-. .+ .
T Consensus 209 ~G~~llliG~~G----sGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~ 284 (506)
T PRK09862 209 GGHNLLLIGPPG----TGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAI 284 (506)
T ss_pred CCcEEEEECCCC----CcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCce
Confidence 445789999998 578899999999888542 12211 2222 11122 1221100 01 3
Q ss_pred ccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCCC-------
Q 015536 225 LIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSN------- 296 (405)
Q Consensus 225 L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~------- 296 (405)
..+|.|.+|+||+|+|||- .+... -+.+|.+.|+.+++...=......++.|+.++.-+...-.
T Consensus 285 ~~pG~l~~A~gGvLfLDEi~e~~~~--------~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~ 356 (506)
T PRK09862 285 PGPGEISLAHNGVLFLDELPEFERR--------TLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNH 356 (506)
T ss_pred ehhhHhhhccCCEEecCCchhCCHH--------HHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCC
Confidence 7889999999999999995 44443 4899999999999977755666667777766665532210
Q ss_pred -------------------cccCceeeeeccCCCCCCCC--CChhhHHHHHHHHHHhccC--------C-----------
Q 015536 297 -------------------IVPADLVIPFQPSSAASFEV--VPAETLEAWRWYLASVRSL--------P----------- 336 (405)
Q Consensus 297 -------------------~lp~d~~vpl~~~~~~~~~~--~~~~~l~~~R~Yi~~ar~~--------~----------- 336 (405)
+=-||+++.+.+........ ...+.-..+|+-+..+|.. +
T Consensus 357 c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~ 436 (506)
T PRK09862 357 NRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQF 436 (506)
T ss_pred CCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHH
Confidence 01278888776442111000 0011112222222222210 1
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 015536 337 HSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELE 397 (405)
Q Consensus 337 ~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~LE 397 (405)
..++++..+.+++.|.+. .++.+..+++|++||.+|...|++.++.+|..+|+++-
T Consensus 437 ~~l~~~~~~~l~~~~~~~-----~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 437 CKLESEDARWLEETLIHL-----GLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYR 492 (506)
T ss_pred hCCCHHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Confidence 135556666665555433 47899999999999999999999999999999999874
No 19
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.28 E-value=0.0001 Score=75.00 Aligned_cols=230 Identities=12% Similarity=0.123 Sum_probs=146.7
Q ss_pred hcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecc--------hhh--
Q 015536 139 LGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLT--------VNY-- 208 (405)
Q Consensus 139 l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt--------~~~-- 208 (405)
+-|.+.++..|++.++.- .+| .+.|.|.+| +.++.+.+.+..++|....++-. .+-
T Consensus 19 ivGq~~~k~al~~~~~~p--------~~~--~vli~G~~G----tGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~ 84 (350)
T CHL00081 19 IVGQEEMKLALILNVIDP--------KIG--GVMIMGDRG----TGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMS 84 (350)
T ss_pred HhChHHHHHHHHHhccCC--------CCC--eEEEEcCCC----CCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhc
Confidence 347888999999988873 124 366999998 67888888888888865544221 000
Q ss_pred --hh--------------cCCCC--c---cccC-----------CC--CcccccceEecCCceEEEeCC-CCCcCccccc
Q 015536 209 --LN--------------TASLA--P---KKDY-----------QT--NRLIPGVLQLADGSHLIIDET-QLETGTLNST 253 (405)
Q Consensus 209 --Ln--------------~~~~~--P---~kD~-----------~t--~~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~ 253 (405)
+. ..+|. | ..|. .. ..++.|.|.-|+||+|+|||- .|....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~---- 160 (350)
T CHL00081 85 DEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHL---- 160 (350)
T ss_pred hhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHH----
Confidence 00 00000 0 0110 01 135799999999999999996 466553
Q ss_pred chhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCC--Cccc------CceeeeeccCCCCCC--------CCC
Q 015536 254 GVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS--NIVP------ADLVIPFQPSSAASF--------EVV 317 (405)
Q Consensus 254 Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS--~~lp------~d~~vpl~~~~~~~~--------~~~ 317 (405)
..+|-++|+.+++.+.-...+ ...+.+++++++.-- .-++ +.+.+.+.....+.. ...
T Consensus 161 ----Q~~LLeam~e~~~~ier~G~s--~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~ 234 (350)
T CHL00081 161 ----VDILLDSAASGWNTVEREGIS--IRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSF 234 (350)
T ss_pred ----HHHHHHHHHhCCeEEeeCCee--eecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhcc
Confidence 677889999988888755545 445557777775321 1122 334444432221110 000
Q ss_pred --Chh-hHH-------HHHHHHHHhcc--CCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 015536 318 --PAE-TLE-------AWRWYLASVRS--LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSL 385 (405)
Q Consensus 318 --~~~-~l~-------~~R~Yi~~ar~--~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~l 385 (405)
.+. .++ ..+.=|..+|. ..+.+++++.+||.+--.+.|.. +.+--..+++.||++|+..|++.|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~----s~Ra~i~l~raArA~Aal~GR~~V 310 (350)
T CHL00081 235 DKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVD----GLRGDIVTNRAAKALAAFEGRTEV 310 (350)
T ss_pred ccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCC----CChHHHHHHHHHHHHHHHcCCCCC
Confidence 000 011 12444555554 36789999999998888777753 467788899999999999999999
Q ss_pred CHHHHHHHHHH
Q 015536 386 SLEHWQMVKEL 396 (405)
Q Consensus 386 t~e~w~~a~~L 396 (405)
+.||.+.+..+
T Consensus 311 ~pdDv~~~a~~ 321 (350)
T CHL00081 311 TPKDIFKVITL 321 (350)
T ss_pred CHHHHHHHHHH
Confidence 99999998776
No 20
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.26 E-value=1.8e-05 Score=85.82 Aligned_cols=166 Identities=16% Similarity=0.170 Sum_probs=115.5
Q ss_pred cccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecc--------cceeeeeccceEEeecCC
Q 015536 224 RLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEY--------YKMEMIADVQMLILSEGK 294 (405)
Q Consensus 224 ~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y--------~~~~~~~dl~~lvLS~gK 294 (405)
++++|.|..|+||.|+|||- .|... -...|.++|+.|++...-.. .+..+++|+.++..+.-.
T Consensus 207 ~i~~G~L~~AngGtL~Ldei~~L~~~--------~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~ 278 (608)
T TIGR00764 207 RVEAGAIHRAHKGVLYIDEIKTMPLE--------VQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD 278 (608)
T ss_pred cCCCCceEECCCCEEEEEChHhCCHH--------HHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHH
Confidence 67999999999999999996 46644 26899999999998875321 133567777766665522
Q ss_pred --CCccc-----Cc---eeeeeccCCCCCCCCCChhhHHHHHHHHHHh-ccC--CCCCChhHHHHHHHHHHHHHhcC-C-
Q 015536 295 --SNIVP-----AD---LVIPFQPSSAASFEVVPAETLEAWRWYLASV-RSL--PHSIESDMQKVVESDLVAARQAD-R- 359 (405)
Q Consensus 295 --S~~lp-----~d---~~vpl~~~~~~~~~~~~~~~l~~~R~Yi~~a-r~~--~~~i~~e~~~~Iq~~fV~~Rq~~-~- 359 (405)
..+-| ++ +.+.+.+... .+++..+.+..|+... +.. .+.+++++.+.|.+++. |.++ +
T Consensus 279 ~l~~l~~~l~~rf~~y~v~v~~~~~~~-----~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~--R~ag~r~ 351 (608)
T TIGR00764 279 DLEGMHPALRSRIRGYGYEVYMKDTMP-----DTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQ--RRAGRKD 351 (608)
T ss_pred HHhhcCHHHHHHhcCCeEEEEeeccCC-----CCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHH--HHHhccc
Confidence 11111 33 3333333321 1344556677777763 332 45799999998887753 3332 2
Q ss_pred --CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhhc
Q 015536 360 --SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRERL 404 (405)
Q Consensus 360 --~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~LE~~R~~R~ 404 (405)
+++.++|..+++.|+..|...|+..++.+|.++|++.=..|..++
T Consensus 352 ~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~~~~~i 398 (608)
T TIGR00764 352 HLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKTLEKQL 398 (608)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999988766665543
No 21
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.08 E-value=0.00014 Score=78.73 Aligned_cols=223 Identities=19% Similarity=0.184 Sum_probs=148.8
Q ss_pred cHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCc---eEEEec--chhhhhcC-CCC
Q 015536 142 DGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPF---TQCIPL--TVNYLNTA-SLA 215 (405)
Q Consensus 142 D~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~---~~~l~l--t~~~Ln~~-~~~ 215 (405)
...++.+|+|..+.-+ + +| -+.|.|..| +.++.|...+..|+|. .+-+|+ |-+.|--. .+.
T Consensus 8 ~~~~~~Al~l~av~p~--~-----~g--Gv~i~g~~G----~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~ 74 (584)
T PRK13406 8 WADAALAAALLAVDPA--G-----LG--GVVLRARAG----PVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLA 74 (584)
T ss_pred HHHHHHHHHHhCcCcc--c-----cc--eEEEEcCCC----cHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHH
Confidence 4556666666555421 1 11 256778887 8899999999999985 233443 22322110 000
Q ss_pred cc-ccCCCCcccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecC
Q 015536 216 PK-KDYQTNRLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEG 293 (405)
Q Consensus 216 P~-kD~~t~~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~g 293 (405)
-. +. ..-.++.|.|-+|+||+|.|||- .+..+. +.+|-+.|+...|...=...++.+|.+.-++-+-++
T Consensus 75 ~~l~~-g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~--------~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~ 145 (584)
T PRK13406 75 ATLRA-GRPVAQRGLLAEADGGVLVLAMAERLEPGT--------AARLAAALDTGEVRLERDGLALRLPARFGLVALDEG 145 (584)
T ss_pred hHhhc-CCcCCCCCceeeccCCEEEecCcccCCHHH--------HHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCC
Confidence 00 00 01137899999999999999996 455553 899999999999998767778888888776665444
Q ss_pred C-CC-ccc------CceeeeeccCCCCCC--CCCChhhHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCC-C
Q 015536 294 K-SN-IVP------ADLVIPFQPSSAASF--EVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSL-G 362 (405)
Q Consensus 294 K-S~-~lp------~d~~vpl~~~~~~~~--~~~~~~~l~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~i-t 362 (405)
. .. -+| ||+.|.+......+. ...+..++...|.-+ .+..+++++.++|-+-+.+. .+ +
T Consensus 146 ~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl-----~~v~v~~~~l~~i~~~~~~~-----gv~S 215 (584)
T PRK13406 146 AEEDERAPAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARL-----PAVGPPPEAIAALCAAAAAL-----GIAS 215 (584)
T ss_pred hhcccCCCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHH-----ccCCCCHHHHHHHHHHHHHh-----CCCC
Confidence 3 10 122 788887764433221 112334555555532 36789999888876544332 33 7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 363 GQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 363 ~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
.+-.+.++++||.+|...|++.|+.+|..+|..+
T Consensus 216 ~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~l 249 (584)
T PRK13406 216 LRAPLLALRAARAAAALAGRTAVEEEDLALAARL 249 (584)
T ss_pred cCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 7889999999999999999999999999999887
No 22
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.07 E-value=0.00084 Score=70.89 Aligned_cols=231 Identities=13% Similarity=0.107 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceE-----
Q 015536 126 ETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ----- 200 (405)
Q Consensus 126 ~iR~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~----- 200 (405)
..-..+.+.|.+.+.|-+.+-+.+++.++++ -++.|.|.|| +.++.+.+.|...+.+..
T Consensus 9 ~~i~~l~~~l~~~i~gre~vI~lll~aalag------------~hVLL~GpPG----TGKT~LAraLa~~~~~~~~F~~~ 72 (498)
T PRK13531 9 ERISRLSSALEKGLYERSHAIRLCLLAALSG------------ESVFLLGPPG----IAKSLIARRLKFAFQNARAFEYL 72 (498)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHccC------------CCEEEECCCC----hhHHHHHHHHHHHhcccCcceee
Confidence 3456789999999999999999999999886 3688999998 889999999998876421
Q ss_pred EEec-chhhhhc-CCCCccccCCC-CcccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecc
Q 015536 201 CIPL-TVNYLNT-ASLAPKKDYQT-NRLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEY 276 (405)
Q Consensus 201 ~l~l-t~~~Ln~-~~~~P~kD~~t-~~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y 276 (405)
...+ |.+.|-. ..+...++... .+...|.|.-++ ++++||. .+... =..+|-++|+...+.-+
T Consensus 73 ~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~--------~QsaLLeam~Er~~t~g--- 139 (498)
T PRK13531 73 MTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPA--------ILNTLLTAINERRFRNG--- 139 (498)
T ss_pred eeeecCcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecccccCCHH--------HHHHHHHHHHhCeEecC---
Confidence 1221 2222211 00111121111 145677776666 9999997 33333 38899999988877643
Q ss_pred cceeeeeccceEEeecCCCCccc------------CceeeeeccCCCC-C---------C------C---CCChhhHHHH
Q 015536 277 YKMEMIADVQMLILSEGKSNIVP------------ADLVIPFQPSSAA-S---------F------E---VVPAETLEAW 325 (405)
Q Consensus 277 ~~~~~~~dl~~lvLS~gKS~~lp------------~d~~vpl~~~~~~-~---------~------~---~~~~~~l~~~ 325 (405)
.-+.+++.|+++.+.. . +| +-+.+.+.+-... + . . ..+.+++..|
T Consensus 140 -~~~~~lp~rfiv~ATN-~--LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~l 215 (498)
T PRK13531 140 -AHEEKIPMRLLVTASN-E--LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQW 215 (498)
T ss_pred -CeEEeCCCcEEEEECC-C--CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHH
Confidence 5668888899998873 1 23 1112222211110 0 0 0 0234555566
Q ss_pred HHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 015536 326 RWYLASVRSLPHSIESDMQKVVESDLVAARQAD--RSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVK 394 (405)
Q Consensus 326 R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~--~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~ 394 (405)
+..+. .+.+++++.+||.+=--+.|... ..++.+---.+++++|+.|...|++.|+.+|...+.
T Consensus 216 q~~v~-----~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ll~ 281 (498)
T PRK13531 216 QKEIG-----KITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLILLK 281 (498)
T ss_pred HHHhc-----ceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHHHhH
Confidence 65542 46788999998854332233222 248999999999999999999999999999977443
No 23
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.28 E-value=0.002 Score=70.47 Aligned_cols=161 Identities=19% Similarity=0.144 Sum_probs=105.4
Q ss_pred cccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecc---------cceeeeeccceEEeecC
Q 015536 224 RLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEY---------YKMEMIADVQMLILSEG 293 (405)
Q Consensus 224 ~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y---------~~~~~~~dl~~lvLS~g 293 (405)
++.+|.|.-|+||.|+|||. .|... -...|..+|+.+++... .+ .+-.+++|+.++..+..
T Consensus 216 ~i~~G~L~kAnGGtL~LDei~~L~~~--------~q~~Llr~L~~~~i~i~-g~~e~~~~~~~~~~~ip~dvrvI~a~~~ 286 (637)
T PRK13765 216 RVEAGAIHKAHKGVLFIDEINTLDLE--------SQQSLLTAMQEKKFPIT-GQSERSSGAMVRTEPVPCDFIMVAAGNL 286 (637)
T ss_pred cCCCCceeECCCcEEEEeChHhCCHH--------HHHHHHHHHHhCCEEec-ccccccccccCCCcceeeeeEEEEecCc
Confidence 57999999999999999996 46544 27889999999988763 11 14567788887766663
Q ss_pred CCC-cccCceeeeeccC-CCCCCCCCChhhHHHHHHHHHHhc----c--CCCCCChhHHHHHHHHHHHHHhcC-C---CC
Q 015536 294 KSN-IVPADLVIPFQPS-SAASFEVVPAETLEAWRWYLASVR----S--LPHSIESDMQKVVESDLVAARQAD-R---SL 361 (405)
Q Consensus 294 KS~-~lp~d~~vpl~~~-~~~~~~~~~~~~l~~~R~Yi~~ar----~--~~~~i~~e~~~~Iq~~fV~~Rq~~-~---~i 361 (405)
.-. .+.-|+.-.++.- -........++..+.++.|+.... . .-+.+++++...|-+.+. |.+. + +.
T Consensus 287 ~ll~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~--R~ag~r~~lsl 364 (637)
T PRK13765 287 DALENMHPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAK--RRAGRKGHLTL 364 (637)
T ss_pred CHHHhhhHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHH--HHhCCcccccc
Confidence 210 0111111111100 000011112233455666665433 2 235799999999888874 4433 2 35
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 362 GGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 362 t~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
..+++..+++.|-..|+..|...++.++..+|+.
T Consensus 365 ~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 365 KLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred CHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 6899999999999999999999999999988874
No 24
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.04 E-value=0.013 Score=60.60 Aligned_cols=236 Identities=16% Similarity=0.139 Sum_probs=145.6
Q ss_pred HHHhhhcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecc--------
Q 015536 134 HLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLT-------- 205 (405)
Q Consensus 134 ~La~~l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt-------- 205 (405)
++..++-|....+..|+|.-+ .-+-. .+.|.|..| +.|+.+...|..|+|--..+-..
T Consensus 14 ~pf~aivGqd~lk~aL~l~av---~P~ig-------gvLI~G~kG----taKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV---DPQIG-------GALIAGEKG----TAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc---ccccc-------eeEEecCCC----ccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 445667899999999988632 22222 245568887 89999999999999976643110
Q ss_pred h--------hh---------------hhcCCCCcccc-------------CCCCcccccceEecCCceEEEeCCC-CCcC
Q 015536 206 V--------NY---------------LNTASLAPKKD-------------YQTNRLIPGVLQLADGSHLIIDETQ-LETG 248 (405)
Q Consensus 206 ~--------~~---------------Ln~~~~~P~kD-------------~~t~~L~~G~LQLa~gT~lviDEt~-l~~G 248 (405)
. +. .-+.++....| +....++.|.|==||+|++-|||-. |.+-
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~ 159 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDH 159 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHH
Confidence 0 00 00001111111 1223689999999999999999974 4433
Q ss_pred cccccchhHHHHHHHHHHh--CceeeeecccceeeeeccceEEeecCCCCccc------------CceeeeeccCCCCCC
Q 015536 249 TLNSTGVENARLLKNLMEF--QKVEYNFEYYKMEMIADVQMLILSEGKSNIVP------------ADLVIPFQPSSAASF 314 (405)
Q Consensus 249 ~L~~~Gv~N~~aL~~li~~--Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~~lp------------~d~~vpl~~~~~~~~ 314 (405)
=+.+|.++++. |.|.-+ .+.+..|+ .++++-+ +-| |.+.+-+....+.+.
T Consensus 160 --------lvd~LLd~aaeG~n~vere--Gisi~hpa--~fvligT----mNPEeGeLrpqLlDRfg~~v~~~~~~~~~~ 223 (423)
T COG1239 160 --------LVDALLDVAAEGVNDVERE--GISIRHPA--RFLLIGT----MNPEEGELRPQLLDRFGLEVDTHYPLDLEE 223 (423)
T ss_pred --------HHHHHHHHHHhCCceeeeC--ceeeccCc--cEEEEee----cCccccccchhhHhhhcceeeccCCCCHHH
Confidence 26889999998 566655 34444444 4454444 333 444444443333220
Q ss_pred ----------CCCCh--------hhHHHHHHHHHHhccC--CCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015536 315 ----------EVVPA--------ETLEAWRWYLASVRSL--PHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGR 374 (405)
Q Consensus 315 ----------~~~~~--------~~l~~~R~Yi~~ar~~--~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laR 374 (405)
....| .....+|.=+..||+. .+.+++++..+|-+- +..-.--+-+---.+.+.||
T Consensus 224 rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~----~~~~~v~g~radi~~~r~a~ 299 (423)
T COG1239 224 RVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAEL----CARLAVDGHRADIVVVRAAK 299 (423)
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHH----HHHhccCCCchhhHHHHHHH
Confidence 01122 1234666666666663 577888877777442 22111111344456899999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHHHhh
Q 015536 375 LMSASFGETSLSLEHWQMVKELERLRRER 403 (405)
Q Consensus 375 llA~s~g~~~lt~e~w~~a~~LE~~R~~R 403 (405)
++|..+|+++++.||..+|..|....+.|
T Consensus 300 a~aa~~Gr~~v~~~Di~~a~~l~l~hR~~ 328 (423)
T COG1239 300 ALAALRGRTEVEEEDIREAAELALLHRRR 328 (423)
T ss_pred HHHHhcCceeeehhhHHHHHhhhhhhhhc
Confidence 99999999999999999999998654443
No 25
>CHL00181 cbbX CbbX; Provisional
Probab=96.95 E-value=0.03 Score=55.48 Aligned_cols=229 Identities=18% Similarity=0.166 Sum_probs=122.2
Q ss_pred HHHHHHHHHhhhcCcHHHHHHH----HHHHhcccccccCcee-ecceeeEeecCCCCccchhHHHHHHHHHhhc------
Q 015536 128 RESLLRHLTSILGNDGIAAHLM----LLHLLSRVHARIDNVA-VGKLSLNLTCLSKESVSVFGNQVRLSVQNLL------ 196 (405)
Q Consensus 128 R~~li~~La~~l~GD~laAeyL----LL~L~s~V~~r~d~~~-~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~------ 196 (405)
.+.+...|.+.+.|-..+++-+ .+..+.+...+.+-.+ -..+++-|.|.|| +-++.+.+.+...+
T Consensus 14 ~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pG----tGKT~lAr~la~~~~~~g~~ 89 (287)
T CHL00181 14 IQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPG----TGKTTVALKMADILYKLGYI 89 (287)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCC----CCHHHHHHHHHHHHHHcCCC
Confidence 4567777777788887776633 3323333333222111 2346899999998 56666776665543
Q ss_pred CceEEEecchhhhhcCCCCccccCCCCcccccceEecCCceEEEeCC-CCC-cCcccccchhHHHHHHHHHHhCceeeee
Q 015536 197 PFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDET-QLE-TGTLNSTGVENARLLKNLMEFQKVEYNF 274 (405)
Q Consensus 197 P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa~gT~lviDEt-~l~-~G~L~~~Gv~N~~aL~~li~~Q~v~YdF 274 (405)
+...++-.+.+.|.... -..+..-..+.+.-+.|++|+|||- .|. .+.-++.|-+-+..|..+|+.+.
T Consensus 90 ~~~~~~~v~~~~l~~~~-----~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~----- 159 (287)
T CHL00181 90 KKGHLLTVTRDDLVGQY-----IGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR----- 159 (287)
T ss_pred CCCceEEecHHHHHHHH-----hccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-----
Confidence 34445555555553311 0112222346677788999999996 452 22223345555677777787532
Q ss_pred cccceeeeeccceEEeecCCCC---cc---c-----CceeeeeccCCCCCCCCCChhhH-HHHHHHHHHhccCCCCCChh
Q 015536 275 EYYKMEMIADVQMLILSEGKSN---IV---P-----ADLVIPFQPSSAASFEVVPAETL-EAWRWYLASVRSLPHSIESD 342 (405)
Q Consensus 275 ~y~~~~~~~dl~~lvLS~gKS~---~l---p-----~d~~vpl~~~~~~~~~~~~~~~l-~~~R~Yi~~ar~~~~~i~~e 342 (405)
-++ ++|++.-... ++ | ++..+.+ .+++++++ +.++.|+.. ..+.++++
T Consensus 160 --------~~~-~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F--------~~~t~~el~~I~~~~l~~---~~~~l~~~ 219 (287)
T CHL00181 160 --------DDL-VVIFAGYKDRMDKFYESNPGLSSRIANHVDF--------PDYTPEELLQIAKIMLEE---QQYQLTPE 219 (287)
T ss_pred --------CCE-EEEEeCCcHHHHHHHhcCHHHHHhCCceEEc--------CCcCHHHHHHHHHHHHHH---hcCCCChh
Confidence 122 3333322111 11 1 2222222 23344443 556666554 35778888
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH----HHcCCCCCCHHHH
Q 015536 343 MQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMS----ASFGETSLSLEHW 390 (405)
Q Consensus 343 ~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA----~s~g~~~lt~e~w 390 (405)
..+.+-+.+.+.+..+..-+.+.+..++.=+...- ...|...++.++.
T Consensus 220 ~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~~~~~~~~~~l 271 (287)
T CHL00181 220 AEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFESGGRVLTKADL 271 (287)
T ss_pred HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 87777776665444333345788887775332221 1124456777764
No 26
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.52 E-value=0.14 Score=55.02 Aligned_cols=147 Identities=18% Similarity=0.248 Sum_probs=93.3
Q ss_pred ccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccc---------------eeeeeccceE
Q 015536 225 LIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYK---------------MEMIADVQML 288 (405)
Q Consensus 225 L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~---------------~~~~~dl~~l 288 (405)
...|.+..++||.|+|||- .|...+ ...|-.+|+..++..+=.||. ..++.|+.++
T Consensus 166 ~~~G~l~~a~gG~L~IdEI~~L~~~~--------q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI 237 (531)
T TIGR02902 166 PKPGAVTRAHGGVLFIDEIGELHPVQ--------MNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLI 237 (531)
T ss_pred ccCchhhccCCcEEEEechhhCCHHH--------HHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEE
Confidence 3578888999999999996 577653 678888999888765533332 2356677665
Q ss_pred EeecCCCCcccCceeeeeccCCCC-CCCCCChhhH-HHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHH
Q 015536 289 ILSEGKSNIVPADLVIPFQPSSAA-SFEVVPAETL-EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDL 366 (405)
Q Consensus 289 vLS~gKS~~lp~d~~vpl~~~~~~-~~~~~~~~~l-~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L 366 (405)
.-+.... ..+.=+++.-... ...+.+++++ ..++.++ +..+..+++++.+.|.... + +.+++
T Consensus 238 ~ATt~~p----~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a---~k~~i~is~~al~~I~~y~---~------n~Rel 301 (531)
T TIGR02902 238 GATTRNP----EEIPPALRSRCVEIFFRPLLDEEIKEIAKNAA---EKIGINLEKHALELIVKYA---S------NGREA 301 (531)
T ss_pred EEecCCc----ccCChHHhhhhheeeCCCCCHHHHHHHHHHHH---HHcCCCcCHHHHHHHHHhh---h------hHHHH
Confidence 5444211 1111111100000 0123344443 3444333 3456889999888775432 1 35889
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 367 SRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 367 ~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
..+++.|..+|...++..++.+|.+.++.
T Consensus 302 ~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 302 VNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 99999998899999999999999999875
No 27
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.91 E-value=0.17 Score=49.04 Aligned_cols=196 Identities=18% Similarity=0.093 Sum_probs=102.3
Q ss_pred ceeeEeecCCCCccchhHHHHHHHHHhh------cCceEEEecchhhhhcCCCCccccCCCCcccccceEecCCceEEEe
Q 015536 168 KLSLNLTCLSKESVSVFGNQVRLSVQNL------LPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIID 241 (405)
Q Consensus 168 ~~sLnl~~~p~~~~~~~~~~L~~~l~~l------~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa~gT~lviD 241 (405)
..++-|.|.|| +-+..+.+.+... ++...++-+..+.+.... -.++..-..+.+.-+.|++|+||
T Consensus 42 ~~~vll~GppG----tGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~-----~g~~~~~~~~~~~~a~~~VL~ID 112 (261)
T TIGR02881 42 VLHMIFKGNPG----TGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEY-----IGHTAQKTREVIKKALGGVLFID 112 (261)
T ss_pred cceEEEEcCCC----CCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhh-----ccchHHHHHHHHHhccCCEEEEe
Confidence 36889999998 4566666666543 355556555555554321 11222223456666779999999
Q ss_pred CC-CCCcCcccccchhHHHHHHHHHHhCcee--eeecccceeee--eccceEEeecCCCCcccCceeeeeccCCCCCCCC
Q 015536 242 ET-QLETGTLNSTGVENARLLKNLMEFQKVE--YNFEYYKMEMI--ADVQMLILSEGKSNIVPADLVIPFQPSSAASFEV 316 (405)
Q Consensus 242 Et-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~--YdF~y~~~~~~--~dl~~lvLS~gKS~~lp~d~~vpl~~~~~~~~~~ 316 (405)
|- .|..|+-...|.+-+.+|-..|+...-. +-+..++-+++ ..++.-+.|+ ++..+.+ .+
T Consensus 113 E~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sR-------f~~~i~f--------~~ 177 (261)
T TIGR02881 113 EAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSR-------FPISIDF--------PD 177 (261)
T ss_pred chhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhc-------cceEEEE--------CC
Confidence 95 6765532233333344555555543211 11111111000 0011112222 3333333 12
Q ss_pred CChhhH-HHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHH--HHHcCCCCCCHHHH
Q 015536 317 VPAETL-EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQ--ADRSLGGQDLSRLLTMGRLM--SASFGETSLSLEHW 390 (405)
Q Consensus 317 ~~~~~l-~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq--~~~~it~~~L~~~L~laRll--A~s~g~~~lt~e~w 390 (405)
++++++ +.++.++. ..++.+++++.++|.+.+-..++ .+..-+.+....++..|... .+..++...+.++.
T Consensus 178 ~~~~el~~Il~~~~~---~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~~~~~~~~~ 253 (261)
T TIGR02881 178 YTVEELMEIAERMVK---EREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDKSDYSKEDL 253 (261)
T ss_pred CCHHHHHHHHHHHHH---HcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHH
Confidence 344444 45555543 35678999999999888776654 33345667777777664433 33345566666654
No 28
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.19 Score=55.27 Aligned_cols=162 Identities=25% Similarity=0.306 Sum_probs=101.6
Q ss_pred cccccceEecCCceEEEeCCC-CCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCCCcccCce
Q 015536 224 RLIPGVLQLADGSHLIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADL 302 (405)
Q Consensus 224 ~L~~G~LQLa~gT~lviDEt~-l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~~lp~d~ 302 (405)
++++|++.=|+||+|+|||.. |.+.. =-..|+.+...|.+.....-.+ .+..+-.+ =.|+|+
T Consensus 215 ~i~pGaVHkAngGVLiIdei~lL~~~~-------~w~~LKa~~~k~~~~~~~~~~s------~~~~v~~e----~vP~d~ 277 (647)
T COG1067 215 RVKPGAVHKANGGVLIIDEIGLLAQPL-------QWKLLKALLDKEQPIWGSSEPS------SGAPVRPE----SVPLDL 277 (647)
T ss_pred cccCcccccccCcEEEEEhhhhhCcHH-------HHHHHHHHHhccccccCcCccc------cCcccCCC----Ccccce
Confidence 899999999999999999963 44331 1345666666665554421111 12222222 355666
Q ss_pred eeeeccCC---------CCC----------CC---C-CChhhHHHHHHHHHHhccC--CCCCChhHHHHHHHHHHHHHhc
Q 015536 303 VIPFQPSS---------AAS----------FE---V-VPAETLEAWRWYLASVRSL--PHSIESDMQKVVESDLVAARQA 357 (405)
Q Consensus 303 ~vpl~~~~---------~~~----------~~---~-~~~~~l~~~R~Yi~~ar~~--~~~i~~e~~~~Iq~~fV~~Rq~ 357 (405)
.+.+--.. .++ .+ + ..++.-..|+-|+..+... -+.++.++-+.|-.. ..|.+
T Consensus 278 klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~--a~R~A 355 (647)
T COG1067 278 KLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIRE--AARRA 355 (647)
T ss_pred EEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH--HHHhc
Confidence 66553221 111 01 1 1223345666666666543 366777666655332 23444
Q ss_pred CC----CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhhc
Q 015536 358 DR----SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRERL 404 (405)
Q Consensus 358 ~~----~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~LE~~R~~R~ 404 (405)
+. ++..++|-.+++.|.-+|.+.|..-++.+|.+.|++.-..|..++
T Consensus 356 g~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~~~~e~~l 406 (647)
T COG1067 356 GDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQKRELREGQL 406 (647)
T ss_pred cccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHhhhhHHHHH
Confidence 43 578999999999999999999999999999999999855554443
No 29
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.60 E-value=0.064 Score=50.82 Aligned_cols=128 Identities=16% Similarity=0.086 Sum_probs=84.4
Q ss_pred hcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEec-------chhhhhc
Q 015536 139 LGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPL-------TVNYLNT 211 (405)
Q Consensus 139 l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~l-------t~~~Ln~ 211 (405)
+-|.+.|+.+|++...++ =+|.+.|.|| +.|+.+.+.+..|+|....-.. ++.++..
T Consensus 5 I~GQe~aKrAL~iAAaG~------------h~lLl~GppG----tGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~ 68 (206)
T PF01078_consen 5 IVGQEEAKRALEIAAAGG------------HHLLLIGPPG----TGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGP 68 (206)
T ss_dssp SSSTHHHHHHHHHHHHCC--------------EEEES-CC----CTHHHHHHHHHHCS--CCEECCESS--S-TT---S-
T ss_pred hcCcHHHHHHHHHHHcCC------------CCeEEECCCC----CCHHHHHHHHHHhCCCCchHHHhhhccccccccCCC
Confidence 458899999999887763 2799999998 7899999999999998655422 1222111
Q ss_pred C----CCCccccC---CC-------C-cccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeec
Q 015536 212 A----SLAPKKDY---QT-------N-RLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFE 275 (405)
Q Consensus 212 ~----~~~P~kD~---~t-------~-~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~ 275 (405)
. .-.|.+.. .| + ....|.+-||.+|+|.+||- .++.+ =+.+|.+.|+..+|...=.
T Consensus 69 ~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~--------vld~Lr~ple~g~v~i~R~ 140 (206)
T PF01078_consen 69 DEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRS--------VLDALRQPLEDGEVTISRA 140 (206)
T ss_dssp --EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HH--------HHHHHHHHHHHSBEEEEET
T ss_pred CCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHH--------HHHHHHHHHHCCeEEEEEC
Confidence 0 11122211 00 1 56888999999999999996 34433 3999999999999999988
Q ss_pred ccceeeeeccceEEe
Q 015536 276 YYKMEMIADVQMLIL 290 (405)
Q Consensus 276 y~~~~~~~dl~~lvL 290 (405)
..++.+|+|.-++.-
T Consensus 141 ~~~~~~Pa~f~lv~a 155 (206)
T PF01078_consen 141 GGSVTYPARFLLVAA 155 (206)
T ss_dssp TEEEEEB--EEEEEE
T ss_pred CceEEEecccEEEEE
Confidence 889999988755444
No 30
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.36 E-value=2 Score=43.03 Aligned_cols=243 Identities=17% Similarity=0.101 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcC-ceEEEec
Q 015536 126 ETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLP-FTQCIPL 204 (405)
Q Consensus 126 ~iR~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P-~~~~l~l 204 (405)
.....+...+.+.+.|+..++..++..++++ -++.|.|.|| +.|..|.+.++..+= ....+.+
T Consensus 13 ~~~~~~~~~~~~~~~g~~~~~~~~l~a~~~~------------~~vll~G~PG----~gKT~la~~lA~~l~~~~~~i~~ 76 (329)
T COG0714 13 EILGKIRSELEKVVVGDEEVIELALLALLAG------------GHVLLEGPPG----VGKTLLARALARALGLPFVRIQC 76 (329)
T ss_pred hHHHHHHhhcCCeeeccHHHHHHHHHHHHcC------------CCEEEECCCC----ccHHHHHHHHHHHhCCCeEEEec
Confidence 3455666777777888999999999988886 2578999998 777777777765543 4555556
Q ss_pred chhhhhcC-----CCCcccc-CCCCcccccceEecCCceEEEeCCCCCcCcccccchhHHHHHHHHHHhCceeeeecccc
Q 015536 205 TVNYLNTA-----SLAPKKD-YQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYK 278 (405)
Q Consensus 205 t~~~Ln~~-----~~~P~kD-~~t~~L~~G~LQLa~gT~lviDEt~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~ 278 (405)
|-+.+-+. .+.+.+. ....++..|.|--+-++.+.+||. |...-+...+|.++|+...+.+. ...+
T Consensus 77 t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEI-------nra~p~~q~aLl~~l~e~~vtv~-~~~~ 148 (329)
T COG0714 77 TPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEI-------NRAPPEVQNALLEALEERQVTVP-GLTT 148 (329)
T ss_pred CCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecc-------ccCCHHHHHHHHHHHhCcEEEEC-CcCC
Confidence 54433221 1222221 333478888888887799999997 34455678999999999877766 2222
Q ss_pred eeeeeccceEEeec-------CCCCccc-----Cceeeeec-cCCCCC-------CCC-C---ChhhHHH---HHHHHHH
Q 015536 279 MEMIADVQMLILSE-------GKSNIVP-----ADLVIPFQ-PSSAAS-------FEV-V---PAETLEA---WRWYLAS 331 (405)
Q Consensus 279 ~~~~~dl~~lvLS~-------gKS~~lp-----~d~~vpl~-~~~~~~-------~~~-~---~~~~l~~---~R~Yi~~ 331 (405)
+...-+++++-. |-+.+.. |.+.+-+. |..... ... . ....... .-.++..
T Consensus 149 --~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 226 (329)
T COG0714 149 --IRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRL 226 (329)
T ss_pred --cCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHH
Confidence 444545554444 2220111 21222221 111100 000 0 0111111 1111111
Q ss_pred hcc-CCCCCChhHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 015536 332 VRS-LPHSIESDMQKVVESDLVAARQADR---SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVK 394 (405)
Q Consensus 332 ar~-~~~~i~~e~~~~Iq~~fV~~Rq~~~---~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~ 394 (405)
... ....+++++.+++..-+-..|.... .++.+....++..++++|...|+..+..++.+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~ 293 (329)
T COG0714 227 QKEVKKVPVSDEVIDYIVTLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIPDDVKALA 293 (329)
T ss_pred HhhhccCCchHHHHHHHHHHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHh
Confidence 111 2577888888888776666665432 35789999999999999999999999998866543
No 31
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=95.31 E-value=0.039 Score=58.97 Aligned_cols=165 Identities=17% Similarity=0.197 Sum_probs=96.6
Q ss_pred cccccceEecCCceEEEeCCCCCcCcccccchhHHHHHHHHHHhCceeeeecc----------cceeeeeccceEEeecC
Q 015536 224 RLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEY----------YKMEMIADVQMLILSEG 293 (405)
Q Consensus 224 ~L~~G~LQLa~gT~lviDEt~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y----------~~~~~~~dl~~lvLS~g 293 (405)
.+.+|+|.=||||.||||-..|=. .-+ --..|+.++..+++.+.-+. .+-++|+|+-|+++-..
T Consensus 322 ~I~~GaLhkANGGyLIL~a~~LL~----~p~--~W~~LKr~L~~~~i~ie~~~~~~~~~~~~l~PepIpl~vKVILiG~~ 395 (509)
T PF13654_consen 322 LIKPGALHKANGGYLILDAEDLLA----NPY--AWERLKRALRTGEIEIESPEEYGLSSTVSLEPEPIPLDVKVILIGDR 395 (509)
T ss_dssp GEE--HHHHTTTSEEEETTGGGS-----HHH---HHHHHHHHHHSEE--B-S---TTSGGGG-B-S-EE---EEEEEE-T
T ss_pred eEcCceEEecCCeEEEEEHHHhhh----ChH--HHHHHHHHHHcCceeeccccccccCCCCCCCCCCcceEEEEEEEcCH
Confidence 689999999999999999975321 112 27899999999999988652 23356888888887764
Q ss_pred CCC--cccCce----eeeeccCCCCCCCCCChhhHHHHHHHHHHh-ccC-CCCCChhHHHHHHHHHHHHHhcCC-CCCHH
Q 015536 294 KSN--IVPADL----VIPFQPSSAASFEVVPAETLEAWRWYLASV-RSL-PHSIESDMQKVVESDLVAARQADR-SLGGQ 364 (405)
Q Consensus 294 KS~--~lp~d~----~vpl~~~~~~~~~~~~~~~l~~~R~Yi~~a-r~~-~~~i~~e~~~~Iq~~fV~~Rq~~~-~it~~ 364 (405)
-.- +...|- .|++..+-+..+. .+++.+..|-.||+.. +.. -..++.++...+-+.-+++ .+++ ++.-.
T Consensus 396 ~~y~~L~~~D~dF~~lFkv~aef~~~~~-~~~e~~~~~~~~i~~~~~~~~L~~~~~~Av~~li~~~~R~-~q~kLsl~~~ 473 (509)
T PF13654_consen 396 ELYYLLYEYDPDFYKLFKVKAEFDSEMP-RTEENIRQYARFIASICQKEGLPPFDRSAVARLIEYSARL-DQDKLSLRFS 473 (509)
T ss_dssp THHHHS-HHHHHHHHHHSEEEE--SEEE---HHHHHHHHHHHHHHHHHHSS--BBHHHHHHHHHHHHHC-C-SEEE--HH
T ss_pred HHHHHHHHhCHHHHhCCCEEEEccccCC-CCHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH-hCCEeCCCHH
Confidence 441 111111 2334333332222 2455556666666643 333 3577887777776665544 1222 46678
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 365 DLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 365 ~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
.+..+|+-|-.+|...|.+.++.++.++|++-
T Consensus 474 ~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~ 505 (509)
T PF13654_consen 474 WLADLLREANYWARKEGAKVITAEHVEQAIEE 505 (509)
T ss_dssp HHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHc
Confidence 99999999999999999999999999999864
No 32
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.07 E-value=0.29 Score=47.55 Aligned_cols=147 Identities=13% Similarity=0.096 Sum_probs=83.6
Q ss_pred ccccceEe--cCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeee-c--ccceeeeeccceEEeecCCCCcc
Q 015536 225 LIPGVLQL--ADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNF-E--YYKMEMIADVQMLILSEGKSNIV 298 (405)
Q Consensus 225 L~~G~LQL--a~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF-~--y~~~~~~~dl~~lvLS~gKS~~l 298 (405)
...|.|.. ..|+.|+|||. .+.+. =..+|.++++.+.+...= . ...+..+-+..+++.|...-
T Consensus 94 ~~~g~l~~A~~~g~~lllDEi~r~~~~--------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~--- 162 (262)
T TIGR02640 94 WVDNRLTLAVREGFTLVYDEFTRSKPE--------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVE--- 162 (262)
T ss_pred ecCchHHHHHHcCCEEEEcchhhCCHH--------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcc---
Confidence 45677764 57999999996 45543 267889999887654320 0 11123444566555554210
Q ss_pred cCceeeeeccC-CCC--C--CCCCC-hhhHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCC--CCCHHHHHHHH
Q 015536 299 PADLVIPFQPS-SAA--S--FEVVP-AETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADR--SLGGQDLSRLL 370 (405)
Q Consensus 299 p~d~~vpl~~~-~~~--~--~~~~~-~~~l~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~--~it~~~L~~~L 370 (405)
..-.-.+.+. .+. . +..++ +++.+.++.. +.++++..++|.+-|-+.|..+. ..+ .-..+
T Consensus 163 -~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~--------~~~~~~~~~~iv~~~~~~R~~~~~~~~~---~r~~i 230 (262)
T TIGR02640 163 -YAGVHETQDALLDRLITIFMDYPDIDTETAILRAK--------TDVAEDSAATIVRLVREFRASGDEITSG---LRASL 230 (262)
T ss_pred -ccceecccHHHHhhcEEEECCCCCHHHHHHHHHHh--------hCCCHHHHHHHHHHHHHHHhhCCccCCc---HHHHH
Confidence 0000000000 000 0 01111 2233334332 24788999999999999994332 344 44456
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHH
Q 015536 371 TMGRLMSASFGETSLSLEHWQMVK 394 (405)
Q Consensus 371 ~laRllA~s~g~~~lt~e~w~~a~ 394 (405)
.++|+++...+...++.+++..++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~ 254 (262)
T TIGR02640 231 MIAEVATQQDIPVDVDDEDFVDLC 254 (262)
T ss_pred HHHHHHHHcCCCCCCCcHHHHHHH
Confidence 777777777889999999998876
No 33
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.21 Score=52.64 Aligned_cols=233 Identities=16% Similarity=0.134 Sum_probs=134.2
Q ss_pred cCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEec-------chhh--hh
Q 015536 140 GNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPL-------TVNY--LN 210 (405)
Q Consensus 140 ~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~l-------t~~~--Ln 210 (405)
-|.+-|+.+|-..-- |-=+|-+.|.|| +-++.|.+-+..|+|-...--. +++. .+
T Consensus 182 ~GQ~~AKrAleiAAA------------GgHnLl~~GpPG----tGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~ 245 (490)
T COG0606 182 KGQEQAKRALEIAAA------------GGHNLLLVGPPG----TGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHE 245 (490)
T ss_pred cCcHHHHHHHHHHHh------------cCCcEEEecCCC----CchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccc
Confidence 578888888866544 445799999998 5678888888888886332100 1111 11
Q ss_pred c---CCCCcccc-----------CCCCcccccceEecCCceEEEeCCCCCcCcccccchhHHHHHHHHHHhCceeeeecc
Q 015536 211 T---ASLAPKKD-----------YQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEY 276 (405)
Q Consensus 211 ~---~~~~P~kD-----------~~t~~L~~G~LQLa~gT~lviDEt~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y 276 (405)
. ..-.|.+- ...+.-+.|..-||.||+|.+||-. +...+=+.+|.+=||+.++...=..
T Consensus 246 ~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElp-------ef~~~iLe~LR~PLE~g~i~IsRa~ 318 (490)
T COG0606 246 GCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELP-------EFKRSILEALREPLENGKIIISRAG 318 (490)
T ss_pred cCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccc-------hhhHHHHHHHhCccccCcEEEEEcC
Confidence 0 11112111 1113678999999999999999962 2223457788888899999888788
Q ss_pred cceeeeeccceEEeecCCC-C--cc----c----------------------CceeeeeccCCCCC-CCC-CChhhHHHH
Q 015536 277 YKMEMIADVQMLILSEGKS-N--IV----P----------------------ADLVIPFQPSSAAS-FEV-VPAETLEAW 325 (405)
Q Consensus 277 ~~~~~~~dl~~lvLS~gKS-~--~l----p----------------------~d~~vpl~~~~~~~-~~~-~~~~~l~~~ 325 (405)
++++||++...+ .+..-+ + .- . .|+.+.+......+ ... ..++.=..+
T Consensus 319 ~~v~ypa~Fqlv-~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v 397 (490)
T COG0606 319 SKVTYPARFQLV-AAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGV 397 (490)
T ss_pred CeeEEeeeeEEh-hhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHH
Confidence 888888886543 222211 0 00 0 11111110000000 000 011112345
Q ss_pred HHHHHHhcc------CCCCCChhHH-HHHHHHHHHHHhcC----------CCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Q 015536 326 RWYLASVRS------LPHSIESDMQ-KVVESDLVAARQAD----------RSLGGQDLSRLLTMGRLMSASFGETSLSLE 388 (405)
Q Consensus 326 R~Yi~~ar~------~~~~i~~e~~-~~Iq~~fV~~Rq~~----------~~it~~~L~~~L~laRllA~s~g~~~lt~e 388 (405)
|.=++.||. ....+.-++. +.|+. |...-..+ -.++.+..|+.|++||-+|=..|++.+...
T Consensus 398 ~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k-~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiADL~g~~~i~~~ 476 (490)
T COG0606 398 RERVAKAREAQIARAGRIGINAELSEEALRK-FCALQREDADLLKAALERLGLSARAYHRILKVARTIADLEGSEQIERS 476 (490)
T ss_pred HHHHHHHHHHHHHHhhccCcchhcCHHHHHH-hcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhhhcccCcchhhHH
Confidence 555555542 1110122222 22332 22221111 157899999999999999999999999999
Q ss_pred HHHHHHHHH
Q 015536 389 HWQMVKELE 397 (405)
Q Consensus 389 ~w~~a~~LE 397 (405)
+..+|++.-
T Consensus 477 hl~eAi~yR 485 (490)
T COG0606 477 HLAEAISYR 485 (490)
T ss_pred HHHHHHhhh
Confidence 999998753
No 34
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=93.99 E-value=0.66 Score=52.28 Aligned_cols=237 Identities=13% Similarity=0.144 Sum_probs=125.5
Q ss_pred HHHhhhcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCC
Q 015536 134 HLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTAS 213 (405)
Q Consensus 134 ~La~~l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~ 213 (405)
.|....+|...+++.++-+|-... +. +..-|. .+.|.|+|| +-++++.+.++..+.+.. ..++..+..+..
T Consensus 319 ~l~~~~~g~~~vK~~i~~~l~~~~--~~-~~~~g~-~i~l~GppG----~GKTtl~~~ia~~l~~~~-~~i~~~~~~d~~ 389 (784)
T PRK10787 319 ILDTDHYGLERVKDRILEYLAVQS--RV-NKIKGP-ILCLVGPPG----VGKTSLGQSIAKATGRKY-VRMALGGVRDEA 389 (784)
T ss_pred HhhhhccCHHHHHHHHHHHHHHHH--hc-ccCCCc-eEEEECCCC----CCHHHHHHHHHHHhCCCE-EEEEcCCCCCHH
Confidence 344556899999999984444321 11 112355 489999998 678889999988776543 334433332210
Q ss_pred -CCcc-ccCC---CCcccccceEe-cCCceEEEeCC-CCCcCcccccchhHHHHHHHHHH-hCceeeeecccceeeeecc
Q 015536 214 -LAPK-KDYQ---TNRLIPGVLQL-ADGSHLIIDET-QLETGTLNSTGVENARLLKNLME-FQKVEYNFEYYKMEMIADV 285 (405)
Q Consensus 214 -~~P~-kD~~---t~~L~~G~LQL-a~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~-~Q~v~YdF~y~~~~~~~dl 285 (405)
+.-. +.|. .+++....-.. ..+.+++|||- ++...+ +| .=..||.+++. .|...|.-+|..++++..-
T Consensus 390 ~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~---~g-~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 390 EIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDM---RG-DPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred HhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhccccc---CC-CHHHHHHHHhccccEEEEecccccccccCCc
Confidence 1111 1121 11111111111 24668999995 666431 11 11579999987 5888888888887666654
Q ss_pred ceEEeecCCCCcccCceeeeeccCCCC-CCCCCChh-hHHHHHHHHH--Hhcc-----CCCCCChhHHHHHHHHHHHHHh
Q 015536 286 QMLILSEGKSNIVPADLVIPFQPSSAA-SFEVVPAE-TLEAWRWYLA--SVRS-----LPHSIESDMQKVVESDLVAARQ 356 (405)
Q Consensus 286 ~~lvLS~gKS~~lp~d~~vpl~~~~~~-~~~~~~~~-~l~~~R~Yi~--~ar~-----~~~~i~~e~~~~Iq~~fV~~Rq 356 (405)
-+.|. +..| .++.=++..-... .....+++ ..+-.+.||. ..+. ....+++++.++|-+.|- |
T Consensus 466 v~~i~-TaN~----~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt--~- 537 (784)
T PRK10787 466 VMFVA-TSNS----MNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYT--R- 537 (784)
T ss_pred eEEEE-cCCC----CCCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCC--c-
Confidence 44444 3344 1211122111100 12233444 4577888884 2221 246799999988866442 2
Q ss_pred cCCCCCHHHHHHHHH-HHHHHHH---HcCC---CCCCHHHHHHHH
Q 015536 357 ADRSLGGQDLSRLLT-MGRLMSA---SFGE---TSLSLEHWQMVK 394 (405)
Q Consensus 357 ~~~~it~~~L~~~L~-laRllA~---s~g~---~~lt~e~w~~a~ 394 (405)
...++.|.+.+. ++|-.+. ..|. -.++.++....+
T Consensus 538 ---e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~l 579 (784)
T PRK10787 538 ---EAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYL 579 (784)
T ss_pred ---ccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHh
Confidence 334566666553 2332221 1222 256666655543
No 35
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.90 E-value=2.5 Score=41.66 Aligned_cols=212 Identities=18% Similarity=0.145 Sum_probs=105.9
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhc--cccc-cc-Cceee--cceeeEeecCCCCccchhHHHHHHHHHhhc------C
Q 015536 130 SLLRHLTSILGNDGIAAHLMLLHLLS--RVHA-RI-DNVAV--GKLSLNLTCLSKESVSVFGNQVRLSVQNLL------P 197 (405)
Q Consensus 130 ~li~~La~~l~GD~laAeyLLL~L~s--~V~~-r~-d~~~~--G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~------P 197 (405)
++++-|.+.+.|-..+++-+-= ++. .+.. |. -|... +.+++.|.|.|| +-+..+...+...+ +
T Consensus 15 ~~~~~l~~~l~Gl~~vk~~i~e-~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pG----TGKT~lA~~ia~~l~~~g~~~ 89 (284)
T TIGR02880 15 EVLDQLDRELIGLKPVKTRIRE-IAALLLVERLRQRLGLASAAPTLHMSFTGNPG----TGKTTVALRMAQILHRLGYVR 89 (284)
T ss_pred HHHHHHHHhccCHHHHHHHHHH-HHHHHHHHHHHHHhCCCcCCCCceEEEEcCCC----CCHHHHHHHHHHHHHHcCCcc
Confidence 3566666666777777766411 111 1111 11 23333 456899999998 44555553333322 2
Q ss_pred ceEEEecchhhhhcCCCCccccCCCCcccccceEecCCceEEEeCC-CCCc-CcccccchhHHHHHHHHHHhCceeeeec
Q 015536 198 FTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDET-QLET-GTLNSTGVENARLLKNLMEFQKVEYNFE 275 (405)
Q Consensus 198 ~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa~gT~lviDEt-~l~~-G~L~~~Gv~N~~aL~~li~~Q~v~YdF~ 275 (405)
...++..+.+.|-.. +.- .+..-..+.++-+.|++|+|||- .|.. ++-...|.+-...|-++|+...
T Consensus 90 ~~~~v~v~~~~l~~~-~~g----~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~------ 158 (284)
T TIGR02880 90 KGHLVSVTRDDLVGQ-YIG----HTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR------ 158 (284)
T ss_pred cceEEEecHHHHhHh-hcc----cchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC------
Confidence 223444444444321 111 11112345667778999999996 4521 1112234444566667776432
Q ss_pred ccceeeeeccceEEeecCCC-C--ccc--------CceeeeeccCCCCCCCCCChhhH-HHHHHHHHHhccCCCCCChhH
Q 015536 276 YYKMEMIADVQMLILSEGKS-N--IVP--------ADLVIPFQPSSAASFEVVPAETL-EAWRWYLASVRSLPHSIESDM 343 (405)
Q Consensus 276 y~~~~~~~dl~~lvLS~gKS-~--~lp--------~d~~vpl~~~~~~~~~~~~~~~l-~~~R~Yi~~ar~~~~~i~~e~ 343 (405)
.++. +|++.... + ++. ++..+.+ .+++++++ +.++.|+.. ..+.+++++
T Consensus 159 -------~~~~-vI~a~~~~~~~~~~~~np~L~sR~~~~i~f--------p~l~~edl~~I~~~~l~~---~~~~l~~~a 219 (284)
T TIGR02880 159 -------DDLV-VILAGYKDRMDSFFESNPGFSSRVAHHVDF--------PDYSEAELLVIAGLMLKE---QQYRFSAEA 219 (284)
T ss_pred -------CCEE-EEEeCCcHHHHHHHhhCHHHHhhCCcEEEe--------CCcCHHHHHHHHHHHHHH---hccccCHHH
Confidence 2332 23332111 0 111 1222222 22344444 566666555 356788888
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 015536 344 QKVVESDLVAARQADRSLGGQDLSRLLTMGRLM 376 (405)
Q Consensus 344 ~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRll 376 (405)
.+.+.+.+...|..+-.=+.+.+..++.-+.+.
T Consensus 220 ~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 220 EEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 888776444334333334578887777655444
No 36
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=91.97 E-value=0.64 Score=38.67 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 338 SIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 338 ~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
.++++..+.++.-+ ....+|.+-++++|++||-+|=..|++.++.+|..+|+.+
T Consensus 42 ~l~~~~~~~l~~~~-----~~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~y 95 (96)
T PF13335_consen 42 PLSSEAKKLLEQAA-----EKLNLSARGYHRILRVARTIADLEGSERITREHIAEALSY 95 (96)
T ss_pred CCCHHHHHHHHHHH-----HHcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHhC
Confidence 46666666665544 2346899999999999999999999999999999999864
No 37
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=91.63 E-value=3.4 Score=45.33 Aligned_cols=45 Identities=31% Similarity=0.461 Sum_probs=33.0
Q ss_pred ccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeeccc
Q 015536 225 LIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYY 277 (405)
Q Consensus 225 L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~ 277 (405)
...|.+.-+.||.|+|||+ .|+.. ....|..+|+.+++.+.-.|+
T Consensus 256 ~~~g~v~~asgGvL~LDEi~~Ld~~--------~Q~~Ll~~Le~~~v~~~~~~~ 301 (615)
T TIGR02903 256 PKTGLVTDAHGGVLFIDEIGELDPL--------LQNKLLKVLEDKRVEFSSSYY 301 (615)
T ss_pred hhcCchhhcCCCeEEEeccccCCHH--------HHHHHHHHHhhCeEEeeccee
Confidence 4567777788999999996 34433 478899999999877654443
No 38
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=90.15 E-value=9.8 Score=41.07 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=74.0
Q ss_pred eecceeeEeecCCCCccchhHHHHHHHHHhhcCce--EEEecchhhhh-----cCCCCccccCCCC---cccccceEecC
Q 015536 165 AVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLN-----TASLAPKKDYQTN---RLIPGVLQLAD 234 (405)
Q Consensus 165 ~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~--~~l~lt~~~Ln-----~~~~~P~kD~~t~---~L~~G~LQLa~ 234 (405)
+-.+.++.|.|.+| +-++.+.+.|....++. -++.+.-..++ +.-|--.+..-|+ .-..|.+..++
T Consensus 232 A~~~~pVLI~GE~G----TGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~ 307 (526)
T TIGR02329 232 ARSDATVLILGESG----TGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAH 307 (526)
T ss_pred hCCCCcEEEECCCC----cCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcC
Confidence 34567999999998 67888899998887664 34444333222 1122212222222 13679999999
Q ss_pred CceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 235 GSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 235 gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
||.|+|||- .|.... ...|-.+++.+.+.= -...-..++|++++..|.
T Consensus 308 gGTLfLdeI~~Lp~~~--------Q~~Ll~~L~~~~~~r--~g~~~~~~~dvRiIaat~ 356 (526)
T TIGR02329 308 RGTLFLDEIGEMPLPL--------QTRLLRVLEEREVVR--VGGTEPVPVDVRVVAATH 356 (526)
T ss_pred CceEEecChHhCCHHH--------HHHHHHHHhcCcEEe--cCCCceeeecceEEeccC
Confidence 999999996 466442 567777888776532 223346788999988875
No 39
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=89.94 E-value=0.45 Score=43.39 Aligned_cols=112 Identities=19% Similarity=0.157 Sum_probs=73.5
Q ss_pred cceeeEeecCCCCccchhHHHHHHHHHhhcCc--eEEEecchhhhhcC-----CCCccccCCC--CcccccceEecCCce
Q 015536 167 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPF--TQCIPLTVNYLNTA-----SLAPKKDYQT--NRLIPGVLQLADGSH 237 (405)
Q Consensus 167 G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~--~~~l~lt~~~Ln~~-----~~~P~kD~~t--~~L~~G~LQLa~gT~ 237 (405)
-+.++-|.|.+| +-++.+.+.|....+| .-++.+.-..++.. -|--.++.-+ ..-..|.|..|+||.
T Consensus 21 ~~~pVlI~GE~G----tGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~Gt 96 (168)
T PF00158_consen 21 SDLPVLITGETG----TGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGGT 96 (168)
T ss_dssp STS-EEEECSTT----SSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSE
T ss_pred CCCCEEEEcCCC----CcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccceE
Confidence 457899999998 6788999999998886 34565544443321 1222222111 245679999999999
Q ss_pred EEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 238 LIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 238 lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
|+|||- .|... -..-|-.+|+.+++.-- ...-+.++|+.++.-|.
T Consensus 97 L~Ld~I~~L~~~--------~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiI~st~ 142 (168)
T PF00158_consen 97 LFLDEIEDLPPE--------LQAKLLRVLEEGKFTRL--GSDKPVPVDVRIIASTS 142 (168)
T ss_dssp EEEETGGGS-HH--------HHHHHHHHHHHSEEECC--TSSSEEE--EEEEEEES
T ss_pred EeecchhhhHHH--------HHHHHHHHHhhchhccc--cccccccccceEEeecC
Confidence 999996 56654 36778899998865332 23457888999888887
No 40
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=89.92 E-value=2.2 Score=42.88 Aligned_cols=112 Identities=16% Similarity=0.120 Sum_probs=74.1
Q ss_pred cceeeEeecCCCCccchhHHHHHHHHHhhcCce--EEEecchhhhhcC-----CCCccccCCCC--cccccceEecCCce
Q 015536 167 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNTA-----SLAPKKDYQTN--RLIPGVLQLADGSH 237 (405)
Q Consensus 167 G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~--~~l~lt~~~Ln~~-----~~~P~kD~~t~--~L~~G~LQLa~gT~ 237 (405)
-+.++.|+|.+| +-++.+.++|....++. .++.+....++.. -|--.+...++ .-..|.+..++||.
T Consensus 28 ~~~pVlI~GE~G----tGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGt 103 (326)
T PRK11608 28 LDKPVLIIGERG----TGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGT 103 (326)
T ss_pred CCCCEEEECCCC----CcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccCCCe
Confidence 356899999998 67888999998888853 4565554444321 12111211112 23478899999999
Q ss_pred EEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 238 LIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 238 lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
|+|||- .|... -...|-.+++.+.+. -.......++|+.++..|.
T Consensus 104 L~l~~i~~L~~~--------~Q~~L~~~l~~~~~~--~~g~~~~~~~~~RiI~~s~ 149 (326)
T PRK11608 104 LFLDELATAPML--------VQEKLLRVIEYGELE--RVGGSQPLQVNVRLVCATN 149 (326)
T ss_pred EEeCChhhCCHH--------HHHHHHHHHhcCcEE--eCCCCceeeccEEEEEeCc
Confidence 999996 55544 267788888877533 2233456788888887775
No 41
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=89.26 E-value=12 Score=40.65 Aligned_cols=193 Identities=11% Similarity=0.077 Sum_probs=105.2
Q ss_pred eecceeeEeecCCCCccchhHHHHHHHHHhh--------cCce--EEEecchhhhhc-----CCCCccccCCCC---ccc
Q 015536 165 AVGKLSLNLTCLSKESVSVFGNQVRLSVQNL--------LPFT--QCIPLTVNYLNT-----ASLAPKKDYQTN---RLI 226 (405)
Q Consensus 165 ~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l--------~P~~--~~l~lt~~~Ln~-----~~~~P~kD~~t~---~L~ 226 (405)
+..+.++.|.|.+| +-++.+.+.|... .++. -++.+.-..++. .-|--.+..-|+ .-.
T Consensus 239 A~s~~pVLI~GE~G----TGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~ 314 (538)
T PRK15424 239 ARSSAAVLIQGETG----TGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGR 314 (538)
T ss_pred hCCCCcEEEECCCC----CCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCcccccc
Confidence 34567999999998 6788888888876 4442 234333332221 112111211122 135
Q ss_pred ccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCCC-c-----cc
Q 015536 227 PGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSN-I-----VP 299 (405)
Q Consensus 227 ~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~-~-----lp 299 (405)
.|.+..++||.|.|||. .|.... ...|-.+++.+.+.= -...-.+++|++++..|...-. + +.
T Consensus 315 ~Gl~e~A~gGTLfLdeI~~Lp~~~--------Q~kLl~~L~e~~~~r--~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr 384 (538)
T PRK15424 315 AGLFEIAHGGTLFLDEIGEMPLPL--------QTRLLRVLEEKEVTR--VGGHQPVPVDVRVISATHCDLEEDVRQGRFR 384 (538)
T ss_pred CCchhccCCCEEEEcChHhCCHHH--------HHHHHhhhhcCeEEe--cCCCceeccceEEEEecCCCHHHHHhcccch
Confidence 68999999999999996 465442 567777888776542 2334567889998887752110 0 11
Q ss_pred CceeeeeccCC--CCCCCCCChhhHHHHHHHHHHh-ccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015536 300 ADLVIPFQPSS--AASFEVVPAETLEAWRWYLASV-RSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLT 371 (405)
Q Consensus 300 ~d~~vpl~~~~--~~~~~~~~~~~l~~~R~Yi~~a-r~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~ 371 (405)
.|+..-+.... -+...+=.++-...++.|+... +..+..+++++.....+..-.+++-+=+=+-++|...+.
T Consensus 385 ~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvie 459 (538)
T PRK15424 385 RDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLME 459 (538)
T ss_pred HHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHH
Confidence 12211111000 0000010222346778888763 344555777776655544333444443445666666655
No 42
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.82 E-value=3 Score=46.59 Aligned_cols=126 Identities=14% Similarity=0.180 Sum_probs=72.8
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhcc-cccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCce-EEEecchh
Q 015536 130 SLLRHLTSILGNDGIAAHLMLLHLLSR-VHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT-QCIPLTVN 207 (405)
Q Consensus 130 ~li~~La~~l~GD~laAeyLLL~L~s~-V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~-~~l~lt~~ 207 (405)
.+-..|.+.+.|...|.+.+.-++... .-......++| ++.+.|++| +-+..|.+.|+..+-.. ..+.|+
T Consensus 447 ~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~--~~lf~Gp~G----vGKT~lA~~la~~l~~~~~~~d~s-- 518 (731)
T TIGR02639 447 NLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVG--SFLFTGPTG----VGKTELAKQLAEALGVHLERFDMS-- 518 (731)
T ss_pred HHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCce--eEEEECCCC----ccHHHHHHHHHHHhcCCeEEEeCc--
Confidence 456666777788888888776555421 11111223344 468999998 66777888887776432 223321
Q ss_pred hhhc----CCCC--c--cccCCCCcccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCcee
Q 015536 208 YLNT----ASLA--P--KKDYQTNRLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVE 271 (405)
Q Consensus 208 ~Ln~----~~~~--P--~kD~~t~~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~ 271 (405)
.... ..+. | ...|+.+..-...+.-.+.++++|||- ++.+. -..+|-.+|+...+.
T Consensus 519 e~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~--------~~~~Ll~~ld~g~~~ 583 (731)
T TIGR02639 519 EYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPD--------IYNILLQVMDYATLT 583 (731)
T ss_pred hhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHH--------HHHHHHHhhccCeee
Confidence 1111 0111 1 112233333344455567899999995 66543 367888999988775
No 43
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.15 E-value=3.6 Score=46.31 Aligned_cols=128 Identities=15% Similarity=0.163 Sum_probs=68.7
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhccccc-ccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchh
Q 015536 129 ESLLRHLTSILGNDGIAAHLMLLHLLSRVHA-RIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVN 207 (405)
Q Consensus 129 ~~li~~La~~l~GD~laAeyLLL~L~s~V~~-r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~ 207 (405)
..|-..|...+.|...|.+.|.-++.-.... .....++| ++.|.|.|| +-++.+.+.++...- ..++-+...
T Consensus 450 ~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~--~~Lf~GP~G----vGKT~lAk~LA~~l~-~~~i~id~s 522 (758)
T PRK11034 450 KNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVG--SFLFAGPTG----VGKTEVTVQLSKALG-IELLRFDMS 522 (758)
T ss_pred HHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcc--eEEEECCCC----CCHHHHHHHHHHHhC-CCcEEeech
Confidence 4455666666788888888776655421110 11123444 689999998 556666666666553 222222211
Q ss_pred hhhcC----CC--Cc-c-ccCCCCcccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCcee
Q 015536 208 YLNTA----SL--AP-K-KDYQTNRLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVE 271 (405)
Q Consensus 208 ~Ln~~----~~--~P-~-kD~~t~~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~ 271 (405)
..... .+ .| - ..|+.+.+-...+.-.+.+++++||- ++... -.++|-.+|+...+.
T Consensus 523 e~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~--------v~~~LLq~ld~G~lt 587 (758)
T PRK11034 523 EYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD--------VFNLLLQVMDNGTLT 587 (758)
T ss_pred hhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHH--------HHHHHHHHHhcCeee
Confidence 11110 00 01 0 01111112222233346789999995 66543 367888899988775
No 44
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=86.73 E-value=5.4 Score=42.07 Aligned_cols=139 Identities=17% Similarity=0.270 Sum_probs=80.7
Q ss_pred eEec-CCceEEEeCC-CCCcC------cccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCCCcccCc
Q 015536 230 LQLA-DGSHLIIDET-QLETG------TLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPAD 301 (405)
Q Consensus 230 LQLa-~gT~lviDEt-~l~~G------~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~~lp~d 301 (405)
++.+ +.|.++|||. |+... .....|| -++|-.+|+--+|...| ..++|+-=.-|.|.+=...-|.|
T Consensus 244 i~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGV--Q~~LLki~EG~~v~~k~----~~i~T~~ILFI~~GAF~~~kp~D 317 (443)
T PRK05201 244 IERVEQNGIVFIDEIDKIAARGGSSGPDVSREGV--QRDLLPLVEGSTVSTKY----GMVKTDHILFIASGAFHVSKPSD 317 (443)
T ss_pred HHHHHcCCEEEEEcchhhcccCCCCCCCCCccch--hcccccccccceeeecc----eeEECCceeEEecCCcCCCChhh
Confidence 4554 8999999994 66532 3445666 78888999988887633 34666654444444311112344
Q ss_pred ee----------eeeccCCCCCC-CCCChhhHHHHHHHHHHhccCC--CCCChhHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 015536 302 LV----------IPFQPSSAASF-EVVPAETLEAWRWYLASVRSLP--HSIESDMQKVVESDLVAARQADRSLGGQDLSR 368 (405)
Q Consensus 302 ~~----------vpl~~~~~~~~-~~~~~~~l~~~R~Yi~~ar~~~--~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~ 368 (405)
++ +.|++-...+. .-.++..=..+++|.+..+..+ ..+++++.+.|.+-=.+.=...+.+.++-||.
T Consensus 318 lIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrt 397 (443)
T PRK05201 318 LIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHT 397 (443)
T ss_pred ccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHH
Confidence 21 11111110000 0012223357899998887654 46889998888665444323345789999998
Q ss_pred HHHHHHHH
Q 015536 369 LLTMGRLM 376 (405)
Q Consensus 369 ~L~laRll 376 (405)
.|- +++
T Consensus 398 I~E--~~L 403 (443)
T PRK05201 398 VME--KLL 403 (443)
T ss_pred HHH--HHH
Confidence 875 444
No 45
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=85.27 E-value=4.1 Score=42.59 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=76.1
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHh---cccccc-c--CceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEE
Q 015536 129 ESLLRHLTSILGNDGIAAHLMLLHLL---SRVHAR-I--DNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCI 202 (405)
Q Consensus 129 ~~li~~La~~l~GD~laAeyLLL~L~---s~V~~r-~--d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l 202 (405)
.++..+|.+.+.|...|++.|...+. -++... . +...+.+-++.|.|.|| +-+..|.+.|+..+..- ++
T Consensus 63 ~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~G----tGKT~lAr~lA~~l~~p-f~ 137 (412)
T PRK05342 63 KEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTG----SGKTLLAQTLARILDVP-FA 137 (412)
T ss_pred HHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCC----CCHHHHHHHHHHHhCCC-ce
Confidence 45677777777899999998866553 222111 0 13446778999999998 56777777777655321 11
Q ss_pred ecchhhhhcCCCCccccCCCCcc------cccceEecCCceEEEeCC-CCCcCc------ccccchhHHHHHHHHHHhCc
Q 015536 203 PLTVNYLNTASLAPKKDYQTNRL------IPGVLQLADGSHLIIDET-QLETGT------LNSTGVENARLLKNLMEFQK 269 (405)
Q Consensus 203 ~lt~~~Ln~~~~~P~kD~~t~~L------~~G~LQLa~gT~lviDEt-~l~~G~------L~~~Gv~N~~aL~~li~~Q~ 269 (405)
.+....++...++-. |. .+.| ..|.++.+.+++++|||- +|.... =+-.|..=.++|-.+|+...
T Consensus 138 ~id~~~l~~~gyvG~-d~-e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~ 215 (412)
T PRK05342 138 IADATTLTEAGYVGE-DV-ENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTV 215 (412)
T ss_pred ecchhhcccCCcccc-hH-HHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCe
Confidence 122222221111100 10 0111 124456678999999995 665321 01112122689999998554
Q ss_pred ee
Q 015536 270 VE 271 (405)
Q Consensus 270 v~ 271 (405)
+.
T Consensus 216 ~~ 217 (412)
T PRK05342 216 AS 217 (412)
T ss_pred EE
Confidence 43
No 46
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=85.00 E-value=32 Score=33.52 Aligned_cols=184 Identities=16% Similarity=0.132 Sum_probs=89.3
Q ss_pred eeEeecCCCCccchhHHHHHHHHHhhcCce-EEEecchhhhhcCCCCccccCCCCcccccceEecCCceEEEeCC-CCCc
Q 015536 170 SLNLTCLSKESVSVFGNQVRLSVQNLLPFT-QCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDET-QLET 247 (405)
Q Consensus 170 sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~-~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa~gT~lviDEt-~l~~ 247 (405)
++-|.|.|| +-|+.|...+.+-+... .++..+ ...+. +.+..=.-.+..+..++|||- .+.+
T Consensus 32 ~~ll~Gp~G----~GKT~la~~ia~~~~~~~~~~~~~-------~~~~~-----~~l~~~l~~~~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 32 HLLLYGPPG----LGKTTLAHIIANEMGVNLKITSGP-------ALEKP-----GDLAAILTNLEEGDVLFIDEIHRLSP 95 (305)
T ss_pred eEEEECCCC----CCHHHHHHHHHHHhCCCEEEeccc-------hhcCc-----hhHHHHHHhcccCCEEEEehHhhhCH
Confidence 578999998 66777877776654322 222111 00011 111111113456889999996 4554
Q ss_pred CcccccchhHHHHHHHHHHhCceee--eecccceeeeeccc--eEEeecCCCC-ccc-----CceeeeeccCCCCCCCCC
Q 015536 248 GTLNSTGVENARLLKNLMEFQKVEY--NFEYYKMEMIADVQ--MLILSEGKSN-IVP-----ADLVIPFQPSSAASFEVV 317 (405)
Q Consensus 248 G~L~~~Gv~N~~aL~~li~~Q~v~Y--dF~y~~~~~~~dl~--~lvLS~gKS~-~lp-----~d~~vpl~~~~~~~~~~~ 317 (405)
.+ ..+|.++|+.-.+.. +-.+..-.+..++| ++|....+.. +-+ +...+.+ .+.
T Consensus 96 ~~--------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l--------~~l 159 (305)
T TIGR00635 96 AV--------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRL--------EFY 159 (305)
T ss_pred HH--------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEe--------CCC
Confidence 32 345777777554332 11121111222222 3333332221 110 1111112 222
Q ss_pred ChhhHHHHHHHHHHh-ccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 318 PAETLEAWRWYLASV-RSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 318 ~~~~l~~~R~Yi~~a-r~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
++++ ++.++... ......+++++.++|-+ .... .++.+.+++.-+..+|...+...++.+.++.++..
T Consensus 160 ~~~e---~~~il~~~~~~~~~~~~~~al~~ia~------~~~G--~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 160 TVEE---LAEIVSRSAGLLNVEIEPEAALEIAR------RSRG--TPRIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred CHHH---HHHHHHHHHHHhCCCcCHHHHHHHHH------HhCC--CcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 3333 33333322 23467888888766632 2222 23555556655555666677777899888888753
No 47
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=84.33 E-value=2.9 Score=42.26 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=73.6
Q ss_pred cceeeEeecCCCCccchhHHHHHHHHHhhcCce--EEEecchhhhhc-----CCCCccccCCCC--cccccceEecCCce
Q 015536 167 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNT-----ASLAPKKDYQTN--RLIPGVLQLADGSH 237 (405)
Q Consensus 167 G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~--~~l~lt~~~Ln~-----~~~~P~kD~~t~--~L~~G~LQLa~gT~ 237 (405)
-+.++.|+|.+| +-++.+.+.|....++. -++.+....++. .-|--.+..-++ .-..|.+..++||.
T Consensus 21 ~~~pVLI~GE~G----tGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGt 96 (329)
T TIGR02974 21 LDRPVLIIGERG----TGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGGT 96 (329)
T ss_pred CCCCEEEECCCC----ChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCCE
Confidence 467899999998 77888999998888763 344444333322 112112211111 34678999999999
Q ss_pred EEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 238 LIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 238 lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
|+|||- .|... -...|-.+++.+.+. -....-..++|+.++..|.
T Consensus 97 L~Ldei~~L~~~--------~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~RiI~at~ 142 (329)
T TIGR02974 97 LFLDELATASLL--------VQEKLLRVIEYGEFE--RVGGSQTLQVDVRLVCATN 142 (329)
T ss_pred EEeCChHhCCHH--------HHHHHHHHHHcCcEE--ecCCCceeccceEEEEech
Confidence 999996 46644 256777888877532 2234456788888887775
No 48
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=83.66 E-value=26 Score=37.56 Aligned_cols=183 Identities=16% Similarity=0.143 Sum_probs=98.7
Q ss_pred cceeeEeecCCCCccchhHHHHHHHHHhhcCce--EEEecchhhhhc-----CCCCccccCCCC--cccccceEecCCce
Q 015536 167 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNT-----ASLAPKKDYQTN--RLIPGVLQLADGSH 237 (405)
Q Consensus 167 G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~--~~l~lt~~~Ln~-----~~~~P~kD~~t~--~L~~G~LQLa~gT~ 237 (405)
.+.++.|.|.+| +-++.+.+.|....++. .++.+....++. .-|--.+..-++ .-..|.+..++||.
T Consensus 218 ~~~pvli~Ge~G----tGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~Gt 293 (534)
T TIGR01817 218 SNSTVLLRGESG----TGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGT 293 (534)
T ss_pred cCCCEEEECCCC----ccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCe
Confidence 356899999998 67888999998888753 344444333322 111111111112 22568899999999
Q ss_pred EEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCC------CcccCceeeeeccCC
Q 015536 238 LIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS------NIVPADLVIPFQPSS 310 (405)
Q Consensus 238 lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS------~~lp~d~~vpl~~~~ 310 (405)
|+|||. .|.... ...|-.+++.+.+. -.......++|+.++..|.... ..+..|+..-+....
T Consensus 294 L~ldei~~L~~~~--------Q~~Ll~~l~~~~~~--~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~ 363 (534)
T TIGR01817 294 LFLDEIGEISPAF--------QAKLLRVLQEGEFE--RVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVP 363 (534)
T ss_pred EEEechhhCCHHH--------HHHHHHHHhcCcEE--ECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCe
Confidence 999996 565442 56677778776532 1223346778888777665221 011111111110000
Q ss_pred CCCCCCC--ChhhH-HHHHHHHHHhc-c--CCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015536 311 AASFEVV--PAETL-EAWRWYLASVR-S--LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLT 371 (405)
Q Consensus 311 ~~~~~~~--~~~~l-~~~R~Yi~~ar-~--~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~ 371 (405)
- .+.+. -.+++ ..++.||.... . .+..+++++.+.+.+. +=+=+-++|...+.
T Consensus 364 i-~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~-------~WPGNvrEL~~v~~ 422 (534)
T TIGR01817 364 I-FLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSC-------KWPGNVRELENCLE 422 (534)
T ss_pred e-eCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhC-------CCCChHHHHHHHHH
Confidence 0 00011 11333 56777777543 2 2367888887776442 11234566665555
No 49
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=83.42 E-value=36 Score=36.37 Aligned_cols=113 Identities=18% Similarity=0.188 Sum_probs=71.1
Q ss_pred ecceeeEeecCCCCccchhHHHHHHHHHhhcCce--EEEecchhhhhc-----CCCCccccCCCCc--ccccceEecCCc
Q 015536 166 VGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNT-----ASLAPKKDYQTNR--LIPGVLQLADGS 236 (405)
Q Consensus 166 ~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~--~~l~lt~~~Ln~-----~~~~P~kD~~t~~--L~~G~LQLa~gT 236 (405)
-.+.++.|+|.+| +-+..+.+.|....++. .++.+.-..+.. .-|--.+..-++. =..|.+..++||
T Consensus 208 ~~~~pVlI~Ge~G----tGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gG 283 (509)
T PRK05022 208 ASDLNVLILGETG----VGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGG 283 (509)
T ss_pred CCCCcEEEECCCC----ccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhcCCC
Confidence 3567899999998 67888999998888864 233333222221 1111112111121 146789999999
Q ss_pred eEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 237 HLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 237 ~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
.|+|||. .|... -...|-.+++.+.+ .-....-..++|++++..|.
T Consensus 284 tL~ldeI~~L~~~--------~Q~~Ll~~l~~~~~--~~~g~~~~~~~~~RiI~~t~ 330 (509)
T PRK05022 284 TLFLDEIGELPLA--------LQAKLLRVLQYGEI--QRVGSDRSLRVDVRVIAATN 330 (509)
T ss_pred EEEecChhhCCHH--------HHHHHHHHHhcCCE--eeCCCCcceecceEEEEecC
Confidence 9999996 45533 25667777877654 21233456778999888876
No 50
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=81.40 E-value=28 Score=36.00 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=71.5
Q ss_pred cceeeEeecCCCCccchhHHHHHHHHHhhcCce--EEEecchhhh-----hcCCCCccccCCCC--cccccceEecCCce
Q 015536 167 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYL-----NTASLAPKKDYQTN--RLIPGVLQLADGSH 237 (405)
Q Consensus 167 G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~--~~l~lt~~~L-----n~~~~~P~kD~~t~--~L~~G~LQLa~gT~ 237 (405)
...++.|.|.+| +-+..+.+.+....++. .++.+.-..+ .+.-|--.+..-++ .-..|.+..++||.
T Consensus 161 ~~~~vli~Ge~G----tGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 236 (445)
T TIGR02915 161 SDITVLLLGESG----TGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGT 236 (445)
T ss_pred CCCCEEEECCCC----cCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCE
Confidence 457888999998 66888888888877653 2333332222 11112222222122 23578999999999
Q ss_pred EEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 238 LIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 238 lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
|+|||. .|.... ...|-.+++.+.+. -....-+.++|++++..|.
T Consensus 237 l~l~~i~~l~~~~--------q~~l~~~l~~~~~~--~~~~~~~~~~~~rii~~~~ 282 (445)
T TIGR02915 237 LFLDEIGDLPLNL--------QAKLLRFLQERVIE--RLGGREEIPVDVRIVCATN 282 (445)
T ss_pred EEEechhhCCHHH--------HHHHHHHHhhCeEE--eCCCCceeeeceEEEEecC
Confidence 999996 566442 66777888877532 1223456788999988886
No 51
>PRK08084 DNA replication initiation factor; Provisional
Probab=80.13 E-value=19 Score=34.23 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=34.1
Q ss_pred hccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 332 VRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 332 ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
++..+..+++|+.++|-..+ ++ +.+.+...|..--..++.. +..+|.+.+++++.|
T Consensus 180 a~~~~~~l~~~v~~~L~~~~------~~--d~r~l~~~l~~l~~~~l~~-~~~it~~~~k~~l~~ 235 (235)
T PRK08084 180 ARLRGFELPEDVGRFLLKRL------DR--EMRTLFMTLDQLDRASITA-QRKLTIPFVKEILKL 235 (235)
T ss_pred HHHcCCCCCHHHHHHHHHhh------cC--CHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHcC
Confidence 44446899999998884433 22 2455555554322223334 456999999888754
No 52
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=79.70 E-value=20 Score=40.94 Aligned_cols=125 Identities=13% Similarity=0.089 Sum_probs=71.4
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhccccc-ccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCc----eEEEecc
Q 015536 131 LLRHLTSILGNDGIAAHLMLLHLLSRVHA-RIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPF----TQCIPLT 205 (405)
Q Consensus 131 li~~La~~l~GD~laAeyLLL~L~s~V~~-r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~----~~~l~lt 205 (405)
+-..|.+.+.|...|-+.+.-++...-.. .....+.| ++.|.|.+| +-+..+.+.|+..+-. ..++.++
T Consensus 559 l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~--~~Lf~Gp~G----vGKt~lA~~La~~l~~~~~~~i~~d~s 632 (852)
T TIGR03346 559 MEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIG--SFLFLGPTG----VGKTELAKALAEFLFDDEDAMVRIDMS 632 (852)
T ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCe--EEEEEcCCC----CCHHHHHHHHHHHhcCCCCcEEEEech
Confidence 34456666788998888887776542110 11112233 467899998 7788888888877632 2333332
Q ss_pred hhhhhcC----CC--Ccc--ccCCCCcccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCcee
Q 015536 206 VNYLNTA----SL--APK--KDYQTNRLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVE 271 (405)
Q Consensus 206 ~~~Ln~~----~~--~P~--kD~~t~~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~ 271 (405)
..... .+ .|. -.|+.+..-.+.+.-.++.++++||. ++... -...|-.+++.+.+.
T Consensus 633 --~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~--------v~~~Ll~~l~~g~l~ 697 (852)
T TIGR03346 633 --EYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPD--------VFNVLLQVLDDGRLT 697 (852)
T ss_pred --hhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHH--------HHHHHHHHHhcCcee
Confidence 11110 11 111 11211112223344556789999996 56544 277888999988877
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=79.08 E-value=14 Score=35.85 Aligned_cols=168 Identities=19% Similarity=0.149 Sum_probs=89.7
Q ss_pred eeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEecCCceEEEeCC-CCCcC
Q 015536 170 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDET-QLETG 248 (405)
Q Consensus 170 sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa~gT~lviDEt-~l~~G 248 (405)
|+-+.|+|| +-+..|...|++=+-..... .+...+.. .+ .|.+=.-++.+|++|.|||. .|..-
T Consensus 52 h~lf~GPPG----~GKTTLA~IIA~e~~~~~~~-~sg~~i~k-----~~-----dl~~il~~l~~~~ILFIDEIHRlnk~ 116 (233)
T PF05496_consen 52 HMLFYGPPG----LGKTTLARIIANELGVNFKI-TSGPAIEK-----AG-----DLAAILTNLKEGDILFIDEIHRLNKA 116 (233)
T ss_dssp EEEEESSTT----SSHHHHHHHHHHHCT--EEE-EECCC--S-----CH-----HHHHHHHT--TT-EEEECTCCC--HH
T ss_pred eEEEECCCc----cchhHHHHHHHhccCCCeEe-ccchhhhh-----HH-----HHHHHHHhcCCCcEEEEechhhccHH
Confidence 799999998 67888999988776654432 22211110 11 22222234678999999997 56655
Q ss_pred cccccchhHHHHHHHHHHhCceeee--ecccceeeeeccceEEeec--CCCCcccCceeeeeccCCCC--CCCCCChhhH
Q 015536 249 TLNSTGVENARLLKNLMEFQKVEYN--FEYYKMEMIADVQMLILSE--GKSNIVPADLVIPFQPSSAA--SFEVVPAETL 322 (405)
Q Consensus 249 ~L~~~Gv~N~~aL~~li~~Q~v~Yd--F~y~~~~~~~dl~~lvLS~--gKS~~lp~d~~vpl~~~~~~--~~~~~~~~~l 322 (405)
+ -.+|-..||+.++..- -.+..-.+.+++|...|-. .++ .-+.-|+++-..- ..+.+++++|
T Consensus 117 ~--------qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~----g~ls~pLrdRFgi~~~l~~Y~~~el 184 (233)
T PF05496_consen 117 Q--------QEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRA----GLLSSPLRDRFGIVLRLEFYSEEEL 184 (233)
T ss_dssp H--------HHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSG----CCTSHCCCTTSSEEEE----THHHH
T ss_pred H--------HHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccc----cccchhHHhhcceecchhcCCHHHH
Confidence 3 7889999999988653 2344555666776555543 344 2223344332211 1233455555
Q ss_pred HHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015536 323 EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGR 374 (405)
Q Consensus 323 ~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laR 374 (405)
.++-. -.++..+..|+++...+| .|++.. |++--.++|+=.|
T Consensus 185 ~~Iv~--r~a~~l~i~i~~~~~~~I------a~rsrG--tPRiAnrll~rvr 226 (233)
T PF05496_consen 185 AKIVK--RSARILNIEIDEDAAEEI------ARRSRG--TPRIANRLLRRVR 226 (233)
T ss_dssp HHHHH--HCCHCTT-EE-HHHHHHH------HHCTTT--SHHHHHHHHHHHC
T ss_pred HHHHH--HHHHHhCCCcCHHHHHHH------HHhcCC--ChHHHHHHHHHHH
Confidence 44432 234567899999988888 344443 6777777776444
No 54
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=78.80 E-value=42 Score=30.91 Aligned_cols=61 Identities=13% Similarity=-0.002 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 015536 322 LEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVK 394 (405)
Q Consensus 322 l~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~ 394 (405)
...++.|.. .....+++++.++|...| .=+.++|..+|.-+...|+..|. ++|.+...+++
T Consensus 165 ~~~l~~~~~---~~~~~~~~~~l~~L~~~~--------~gn~r~L~~~l~~~~~~~~~~~~-~i~~~~~~~~~ 225 (226)
T TIGR03420 165 IAALQSRAA---RRGLQLPDEVADYLLRHG--------SRDMGSLMALLDALDRASLAAKR-KITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHH---HcCCCCCHHHHHHHHHhc--------cCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHh
Confidence 344554433 346779999888886643 23689999999999988888774 69988877764
No 55
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=77.39 E-value=50 Score=32.92 Aligned_cols=189 Identities=16% Similarity=0.136 Sum_probs=94.3
Q ss_pred eeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEecCCceEEEeCC-CCCcC
Q 015536 170 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDET-QLETG 248 (405)
Q Consensus 170 sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa~gT~lviDEt-~l~~G 248 (405)
++-|.|.|| +-++.|...+.+-+-...+. .....+ ... +.+..=.-.+..|.+++|||. .+...
T Consensus 53 ~~ll~GppG----~GKT~la~~ia~~l~~~~~~-~~~~~~-----~~~-----~~l~~~l~~l~~~~vl~IDEi~~l~~~ 117 (328)
T PRK00080 53 HVLLYGPPG----LGKTTLANIIANEMGVNIRI-TSGPAL-----EKP-----GDLAAILTNLEEGDVLFIDEIHRLSPV 117 (328)
T ss_pred cEEEECCCC----ccHHHHHHHHHHHhCCCeEE-Eecccc-----cCh-----HHHHHHHHhcccCCEEEEecHhhcchH
Confidence 678999998 66777877777665442221 111101 111 111111112467899999996 45432
Q ss_pred cccccchhHHHHHHHHHHhCceeeee--cccceeeeeccc--eEEeecCCCCcccCceeeeeccCCCC--CCCCCChhhH
Q 015536 249 TLNSTGVENARLLKNLMEFQKVEYNF--EYYKMEMIADVQ--MLILSEGKSNIVPADLVIPFQPSSAA--SFEVVPAETL 322 (405)
Q Consensus 249 ~L~~~Gv~N~~aL~~li~~Q~v~YdF--~y~~~~~~~dl~--~lvLS~gKS~~lp~d~~vpl~~~~~~--~~~~~~~~~l 322 (405)
. -..+..+|+...+..-. ....-.+...+| ++|....+...++. +++.-... .....++++
T Consensus 118 ------~--~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~----~L~sRf~~~~~l~~~~~~e- 184 (328)
T PRK00080 118 ------V--EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTS----PLRDRFGIVQRLEFYTVEE- 184 (328)
T ss_pred ------H--HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCH----HHHHhcCeeeecCCCCHHH-
Confidence 1 23456677765443211 111111111222 23333322211111 11110000 112223333
Q ss_pred HHHHHHHHHh-ccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 323 EAWRWYLASV-RSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 323 ~~~R~Yi~~a-r~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
++.+|... ...+..+++++.++|-+ ..+. +++....++.-.+..|...+...++.+....+.+.
T Consensus 185 --~~~il~~~~~~~~~~~~~~~~~~ia~------~~~G--~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 185 --LEKIVKRSARILGVEIDEEGALEIAR------RSRG--TPRIANRLLRRVRDFAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred --HHHHHHHHHHHcCCCcCHHHHHHHHH------HcCC--CchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 33333322 33577889988777632 2332 34777778877777788778788998888888754
No 56
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=76.92 E-value=22 Score=31.45 Aligned_cols=102 Identities=18% Similarity=0.170 Sum_probs=58.1
Q ss_pred eeEeecCCCCccchhHHHHHHHHHhhcCceE-EEecc----hhhhhcCCCCccccCCCC--cccccceEecCCceEEEeC
Q 015536 170 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ-CIPLT----VNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDE 242 (405)
Q Consensus 170 sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~-~l~lt----~~~Ln~~~~~P~kD~~t~--~L~~G~LQLa~gT~lviDE 242 (405)
|+.|.|.|| +.|..+.+.++..+-... .+.+| .+.+.- .|.-|..++ ++..|.+- .+++++||
T Consensus 1 HvLleg~PG----~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G---~~v~~~~~~~f~~~~GPif---~~ill~DE 70 (131)
T PF07726_consen 1 HVLLEGVPG----VGKTTLAKALARSLGLSFKRIQFTPDLLPSDILG---FPVYDQETGEFEFRPGPIF---TNILLADE 70 (131)
T ss_dssp -EEEES-------HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHE---EEEEETTTTEEEEEE-TT----SSEEEEET
T ss_pred CEeeECCCc----cHHHHHHHHHHHHcCCceeEEEecCCCCccccee---eeeeccCCCeeEeecChhh---hceeeecc
Confidence 578899998 778888888777665432 24444 333322 233444444 56667666 56899999
Q ss_pred CCCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 243 TQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 243 t~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
. |-.--+-..||-++|+..+|.++ ..+++.--|+.|+-.
T Consensus 71 i-------NrappktQsAlLeam~Er~Vt~~----g~~~~lp~pf~ViAT 109 (131)
T PF07726_consen 71 I-------NRAPPKTQSALLEAMEERQVTID----GQTYPLPDPFFVIAT 109 (131)
T ss_dssp G-------GGS-HHHHHHHHHHHHHSEEEET----TEEEE--SS-EEEEE
T ss_pred c-------ccCCHHHHHHHHHHHHcCeEEeC----CEEEECCCcEEEEEe
Confidence 7 33444558999999999999987 444555566666644
No 57
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=76.77 E-value=25 Score=38.53 Aligned_cols=111 Identities=12% Similarity=0.089 Sum_probs=70.4
Q ss_pred cceeeEeecCCCCccchhHHHHHHHHHhhcCce--EEEecchhhhh-----cCCCCccccCCCCcccccceEecCCceEE
Q 015536 167 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLN-----TASLAPKKDYQTNRLIPGVLQLADGSHLI 239 (405)
Q Consensus 167 G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~--~~l~lt~~~Ln-----~~~~~P~kD~~t~~L~~G~LQLa~gT~lv 239 (405)
.+.++.|.|.+| +-++.+.++|....++. .++.+.-..++ +.-| -...+....-..|.+..++||.|+
T Consensus 347 ~~~pvli~Ge~G----tGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elf-g~~~~~~~~~~~g~~~~a~~GtL~ 421 (638)
T PRK11388 347 SSFPVLLCGEEG----VGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFL-GSDRTDSENGRLSKFELAHGGTLF 421 (638)
T ss_pred cCCCEEEECCCC----cCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhc-CCCCcCccCCCCCceeECCCCEEE
Confidence 567899999998 67888999998887753 34434322221 1111 111111123356889999999999
Q ss_pred EeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 240 IDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 240 iDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
|||. .|.... ...|-.+++.+.+.= ....-..++|+.++..|.
T Consensus 422 ldei~~l~~~~--------Q~~Ll~~l~~~~~~~--~~~~~~~~~~~riI~~t~ 465 (638)
T PRK11388 422 LEKVEYLSPEL--------QSALLQVLKTGVITR--LDSRRLIPVDVRVIATTT 465 (638)
T ss_pred EcChhhCCHHH--------HHHHHHHHhcCcEEe--CCCCceEEeeEEEEEecc
Confidence 9996 455442 567777887776531 133456778888777665
No 58
>PRK10865 protein disaggregation chaperone; Provisional
Probab=75.83 E-value=50 Score=37.87 Aligned_cols=127 Identities=11% Similarity=0.118 Sum_probs=69.2
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhcccc-cccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCce--EEEecchh
Q 015536 131 LLRHLTSILGNDGIAAHLMLLHLLSRVH-ARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVN 207 (405)
Q Consensus 131 li~~La~~l~GD~laAeyLLL~L~s~V~-~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~--~~l~lt~~ 207 (405)
+-..|...+.|...|-+.+.-++-.... ......++| ++.|.|.+| +-+..+.+.|...+... .++.+...
T Consensus 562 l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~--~~Lf~Gp~G----~GKT~lA~aLa~~l~~~~~~~i~id~s 635 (857)
T PRK10865 562 MEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIG--SFLFLGPTG----VGKTELCKALANFMFDSDDAMVRIDMS 635 (857)
T ss_pred HHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCc--eEEEECCCC----CCHHHHHHHHHHHhhcCCCcEEEEEhH
Confidence 4445555556777666655555432210 111123334 688999998 66888888888776422 22323222
Q ss_pred hhhcC----CCC--ccc--cCCCCcccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCcee
Q 015536 208 YLNTA----SLA--PKK--DYQTNRLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVE 271 (405)
Q Consensus 208 ~Ln~~----~~~--P~k--D~~t~~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~ 271 (405)
.+... .+. |.. .|+.+..-.+.+...++++++|||- ++... -...|-.+++.+.+.
T Consensus 636 e~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~--------v~~~Ll~ile~g~l~ 700 (857)
T PRK10865 636 EFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPD--------VFNILLQVLDDGRLT 700 (857)
T ss_pred HhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHH--------HHHHHHHHHhhCcee
Confidence 22211 111 110 1112222334555567899999996 55543 378888899888765
No 59
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=75.34 E-value=55 Score=33.75 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 360 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 360 ~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
..+..|+..+.+-|-..|...+...++.+|...|++-
T Consensus 335 g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~ 371 (389)
T PRK03992 335 GASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEK 371 (389)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 5789999999999999999999999999999998753
No 60
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=75.30 E-value=14 Score=39.26 Aligned_cols=168 Identities=14% Similarity=0.118 Sum_probs=97.7
Q ss_pred ecceeeEeecCCCCccchhHHHHHHHHHhhcCceE--EEec-----chhhhhcCCCCccccCCCC--cccccceEecCCc
Q 015536 166 VGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ--CIPL-----TVNYLNTASLAPKKDYQTN--RLIPGVLQLADGS 236 (405)
Q Consensus 166 ~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~--~l~l-----t~~~Ln~~~~~P~kD~~t~--~L~~G~LQLa~gT 236 (405)
--+.++.|.|-+| +-++-+..+|....+|.. ++++ +-+.+-+--|-..|---|| .=..|.++.|+||
T Consensus 162 ~s~a~VLI~GESG----tGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GG 237 (464)
T COG2204 162 PSDASVLITGESG----TGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANGG 237 (464)
T ss_pred CCCCCEEEECCCC----CcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcCCc
Confidence 3467899999998 678899999999999843 3332 2222223234444433344 4578999999999
Q ss_pred eEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCC------CcccCceeeeeccC
Q 015536 237 HLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS------NIVPADLVIPFQPS 309 (405)
Q Consensus 237 ~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS------~~lp~d~~vpl~~~ 309 (405)
.|.|||. .|.-. =..-|-.+++.+++ ..-...-++++|++++.-|...= --|--|+..-|.-.
T Consensus 238 TLfLDEI~~mpl~--------~Q~kLLRvLqe~~~--~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~ 307 (464)
T COG2204 238 TLFLDEIGEMPLE--------LQVKLLRVLQEREF--ERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVV 307 (464)
T ss_pred eEEeeccccCCHH--------HHHHHHHHHHcCee--EecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccc
Confidence 9999997 45532 13335556666654 34456677899999988776110 01112222211111
Q ss_pred CC--CCCCCCChhhHHHHHHHHHHhcc----CCCCCChhHHHHH
Q 015536 310 SA--ASFEVVPAETLEAWRWYLASVRS----LPHSIESDMQKVV 347 (405)
Q Consensus 310 ~~--~~~~~~~~~~l~~~R~Yi~~ar~----~~~~i~~e~~~~I 347 (405)
+- +..-+=.++-...++.|+..+.. ....+++++.+.+
T Consensus 308 ~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L 351 (464)
T COG2204 308 PLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAAL 351 (464)
T ss_pred eecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 10 00001122334677777777642 2357888777765
No 61
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=73.95 E-value=95 Score=32.30 Aligned_cols=114 Identities=17% Similarity=0.146 Sum_probs=72.7
Q ss_pred eecceeeEeecCCCCccchhHHHHHHHHHhhcCce--EEEecchhhhhc-----CCCCccccCCC--CcccccceEecCC
Q 015536 165 AVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNT-----ASLAPKKDYQT--NRLIPGVLQLADG 235 (405)
Q Consensus 165 ~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~--~~l~lt~~~Ln~-----~~~~P~kD~~t--~~L~~G~LQLa~g 235 (405)
.....++.|+|.+| +-+..+.+.|....++. .++.+....+.. ..|--.+..-+ .....|.+..++|
T Consensus 158 ~~~~~~vli~Ge~G----tGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~ 233 (469)
T PRK10923 158 SRSSISVLINGESG----TGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADG 233 (469)
T ss_pred hccCCeEEEEeCCC----CcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCC
Confidence 34678899999998 66788888888888753 344444333321 11111111111 2456899999999
Q ss_pred ceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 236 SHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 236 T~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
|.++|||. .|... -...|-.+++.+++.= ........+|++++..|.
T Consensus 234 Gtl~l~~i~~l~~~--------~q~~L~~~l~~~~~~~--~~~~~~~~~~~rii~~~~ 281 (469)
T PRK10923 234 GTLFLDEIGDMPLD--------VQTRLLRVLADGQFYR--VGGYAPVKVDVRIIAATH 281 (469)
T ss_pred CEEEEeccccCCHH--------HHHHHHHHHhcCcEEe--CCCCCeEEeeEEEEEeCC
Confidence 99999996 45543 3567777888775431 122235678899988885
No 62
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=73.50 E-value=27 Score=36.94 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q 015536 360 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLR 400 (405)
Q Consensus 360 ~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~LE~~R 400 (405)
..+..|+..+++-|-.+|.-.|+..++.+|+..|++--..|
T Consensus 387 g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 387 ELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhh
Confidence 46889999999999999999999999999999998765443
No 63
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=72.87 E-value=59 Score=33.85 Aligned_cols=38 Identities=3% Similarity=0.040 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 015536 360 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELE 397 (405)
Q Consensus 360 ~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~LE 397 (405)
..+..|+..+.+-|...|...++..++.+||+.|++--
T Consensus 349 g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 349 KISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTV 386 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 57899999999999999999999999999999998764
No 64
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=70.88 E-value=10 Score=32.33 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=55.2
Q ss_pred eeEeecCCCCccchhHHHHHHHHHhhcCceEE-Eecc----hhhhhcCCCCccccCCCCcccccceEe--cCCceEEEeC
Q 015536 170 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQC-IPLT----VNYLNTASLAPKKDYQTNRLIPGVLQL--ADGSHLIIDE 242 (405)
Q Consensus 170 sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~-l~lt----~~~Ln~~~~~P~kD~~t~~L~~G~LQL--a~gT~lviDE 242 (405)
++.|.|.|| +-|+.|.+.+..+...... +.++ .+.|-. .+.|. ......+.|.|-- .+|.+++|||
T Consensus 1 ~vlL~G~~G----~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g-~~~~~--~~~~~~~~~~l~~a~~~~~il~lDE 73 (139)
T PF07728_consen 1 PVLLVGPPG----TGKTTLARELAALLGRPVIRINCSSDTTEEDLIG-SYDPS--NGQFEFKDGPLVRAMRKGGILVLDE 73 (139)
T ss_dssp EEEEEESSS----SSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHC-EEET---TTTTCEEE-CCCTTHHEEEEEEESS
T ss_pred CEEEECCCC----CCHHHHHHHHHHHhhcceEEEEecccccccccee-eeeec--ccccccccccccccccceeEEEECC
Confidence 578999998 7788999998888865443 3332 333322 11211 1223566777763 3799999999
Q ss_pred CC-CCcCcccccchhHHHHHHHHHHhCceeee
Q 015536 243 TQ-LETGTLNSTGVENARLLKNLMEFQKVEYN 273 (405)
Q Consensus 243 t~-l~~G~L~~~Gv~N~~aL~~li~~Q~v~Yd 273 (405)
-. ..+. =+.+|..+++...+...
T Consensus 74 in~a~~~--------v~~~L~~ll~~~~~~~~ 97 (139)
T PF07728_consen 74 INRAPPE--------VLESLLSLLEERRIQLP 97 (139)
T ss_dssp CGG--HH--------HHHTTHHHHSSSEEEE-
T ss_pred cccCCHH--------HHHHHHHHHhhCccccc
Confidence 63 2322 37889999998876643
No 65
>PRK08727 hypothetical protein; Validated
Probab=68.77 E-value=77 Score=30.07 Aligned_cols=180 Identities=15% Similarity=0.085 Sum_probs=87.8
Q ss_pred eeEeecCCCCccchhHHHHHHHH----HhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEecCCceEEEeCCCC
Q 015536 170 SLNLTCLSKESVSVFGNQVRLSV----QNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQL 245 (405)
Q Consensus 170 sLnl~~~p~~~~~~~~~~L~~~l----~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa~gT~lviDEt~l 245 (405)
.+-|.|.+| +-|+.|...+ ..--.++.|++++- +.. .+ .+ .+. .+.+-..+||||-..
T Consensus 43 ~l~l~G~~G----~GKThL~~a~~~~~~~~~~~~~y~~~~~--~~~-~~---~~----~~~----~l~~~dlLiIDDi~~ 104 (233)
T PRK08727 43 WLYLSGPAG----TGKTHLALALCAAAEQAGRSSAYLPLQA--AAG-RL---RD----ALE----ALEGRSLVALDGLES 104 (233)
T ss_pred eEEEECCCC----CCHHHHHHHHHHHHHHcCCcEEEEeHHH--hhh-hH---HH----HHH----HHhcCCEEEEeCccc
Confidence 389999998 4566666664 22234677887532 110 00 00 000 122335799999755
Q ss_pred CcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCCCcccCceeeeeccCCCC---C-CCCCChhh
Q 015536 246 ETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAA---S-FEVVPAET 321 (405)
Q Consensus 246 ~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~~lp~d~~vpl~~~~~~---~-~~~~~~~~ 321 (405)
-.|+-. ...++.++++.. | .-..++++.|. ..|.++.....+-.+. . .-.+.+.+
T Consensus 105 l~~~~~-----~~~~lf~l~n~~---~---------~~~~~vI~ts~----~~p~~l~~~~~dL~SRl~~~~~~~l~~~~ 163 (233)
T PRK08727 105 IAGQRE-----DEVALFDFHNRA---R---------AAGITLLYTAR----QMPDGLALVLPDLRSRLAQCIRIGLPVLD 163 (233)
T ss_pred ccCChH-----HHHHHHHHHHHH---H---------HcCCeEEEECC----CChhhhhhhhHHHHHHHhcCceEEecCCC
Confidence 444211 123444443322 0 11344666665 2234333222111111 0 11122223
Q ss_pred HHHHHHHHHH-hccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 015536 322 LEAWRWYLAS-VRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELE 397 (405)
Q Consensus 322 l~~~R~Yi~~-ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~LE 397 (405)
.+.++.++.. |+..+..+++++.++|-+.+ ++ +.+.+..+|...-..|...+ ..+|.+.++++++.+
T Consensus 164 ~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~------~r--d~r~~l~~L~~l~~~~~~~~-~~it~~~~~~~l~~~ 231 (233)
T PRK08727 164 DVARAAVLRERAQRRGLALDEAAIDWLLTHG------ER--ELAGLVALLDRLDRESLAAK-RRVTVPFLRRVLEEG 231 (233)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC------CC--CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHhhc
Confidence 3556666654 55457899999888874432 21 12333333332222244555 479999999888654
No 66
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=68.70 E-value=69 Score=32.48 Aligned_cols=36 Identities=14% Similarity=0.236 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 360 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 360 ~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
..+..|+..+.+-|...|...|+..++.+|++.|.+
T Consensus 326 g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~ 361 (364)
T TIGR01242 326 GASGADLKAICTEAGMFAIREERDYVTMDDFIKAVE 361 (364)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Confidence 468999999999999999999999999999999875
No 67
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=67.47 E-value=92 Score=35.24 Aligned_cols=214 Identities=16% Similarity=0.195 Sum_probs=97.3
Q ss_pred HHHHhhhcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcC
Q 015536 133 RHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTA 212 (405)
Q Consensus 133 ~~La~~l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~ 212 (405)
..|..-++|...+++-++=.+-.+. .+. ...|. ++.|.|.|| +-+..+.+.|+..+-+.. ..+...++.+.
T Consensus 316 ~~l~~~~~G~~~~k~~i~~~~~~~~-~~~--~~~~~-~lll~GppG----~GKT~lAk~iA~~l~~~~-~~i~~~~~~~~ 386 (775)
T TIGR00763 316 EILDEDHYGLKKVKERILEYLAVQK-LRG--KMKGP-ILCLVGPPG----VGKTSLGKSIAKALNRKF-VRFSLGGVRDE 386 (775)
T ss_pred HHhhhhcCChHHHHHHHHHHHHHHH-hhc--CCCCc-eEEEECCCC----CCHHHHHHHHHHHhcCCe-EEEeCCCcccH
Confidence 3344456788888877654333221 111 12233 799999998 678888888876653222 22222222110
Q ss_pred -CCCc-cccC---CCCcccccceE-ecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeecc
Q 015536 213 -SLAP-KKDY---QTNRLIPGVLQ-LADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADV 285 (405)
Q Consensus 213 -~~~P-~kD~---~t~~L~~G~LQ-La~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl 285 (405)
.+.- .+.| ..+++..+..+ -..+.+++|||. ++..+. .| .-..||-+++...+-. .|.-+.+..++|.
T Consensus 387 ~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~---~~-~~~~aLl~~ld~~~~~-~f~d~~~~~~~d~ 461 (775)
T TIGR00763 387 AEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSF---RG-DPASALLEVLDPEQNN-AFSDHYLDVPFDL 461 (775)
T ss_pred HHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCcc---CC-CHHHHHHHhcCHHhcC-ccccccCCceecc
Confidence 0000 0111 11233222111 124569999995 787542 11 1246777777642111 1111112334443
Q ss_pred -c-eEEeecCCCCcccCceeeeeccCCC-CCCCCCCh-hhHHHHHHHHHHh--c-----cCCCCCChhHHHHHHHHHHHH
Q 015536 286 -Q-MLILSEGKSNIVPADLVIPFQPSSA-ASFEVVPA-ETLEAWRWYLASV--R-----SLPHSIESDMQKVVESDLVAA 354 (405)
Q Consensus 286 -~-~lvLS~gKS~~lp~d~~vpl~~~~~-~~~~~~~~-~~l~~~R~Yi~~a--r-----~~~~~i~~e~~~~Iq~~fV~~ 354 (405)
+ ++|.+.....-+|. ++..-.. -.+..++. +..+-++.|+..- + .....+++++.++|.+.|-
T Consensus 462 s~v~~I~TtN~~~~i~~----~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~-- 535 (775)
T TIGR00763 462 SKVIFIATANSIDTIPR----PLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYT-- 535 (775)
T ss_pred CCEEEEEecCCchhCCH----HHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcC--
Confidence 2 22333332211111 1110000 01122333 3456777777422 1 1135789999888866552
Q ss_pred HhcCCCCCHHHHHHHH
Q 015536 355 RQADRSLGGQDLSRLL 370 (405)
Q Consensus 355 Rq~~~~it~~~L~~~L 370 (405)
|. ...+.|.+.+
T Consensus 536 ~e----~g~R~l~r~i 547 (775)
T TIGR00763 536 RE----AGVRNLERQI 547 (775)
T ss_pred hh----cCChHHHHHH
Confidence 22 2346665544
No 68
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=66.77 E-value=18 Score=37.99 Aligned_cols=133 Identities=16% Similarity=0.158 Sum_probs=75.0
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHh---ccccc----cc-CceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceE
Q 015536 129 ESLLRHLTSILGNDGIAAHLMLLHLL---SRVHA----RI-DNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ 200 (405)
Q Consensus 129 ~~li~~La~~l~GD~laAeyLLL~L~---s~V~~----r~-d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~ 200 (405)
..+..+|.+.+.|.+.|.+.+...+. .++.. +. ++..+++-++.|.|.|| +-++.|.+.|+..+...
T Consensus 69 ~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~G----sGKT~lAraLA~~l~~p- 143 (413)
T TIGR00382 69 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTG----SGKTLLAQTLARILNVP- 143 (413)
T ss_pred HHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCC----cCHHHHHHHHHHhcCCC-
Confidence 45777788878899999999987653 22221 11 23456788999999998 56777777777654211
Q ss_pred EEecchhhhhcCCCCccccCCCCcc------cccceEecCCceEEEeCC-CCCcC------cccccchhHHHHHHHHHHh
Q 015536 201 CIPLTVNYLNTASLAPKKDYQTNRL------IPGVLQLADGSHLIIDET-QLETG------TLNSTGVENARLLKNLMEF 267 (405)
Q Consensus 201 ~l~lt~~~Ln~~~~~P~kD~~t~~L------~~G~LQLa~gT~lviDEt-~l~~G------~L~~~Gv~N~~aL~~li~~ 267 (405)
+.-.....|...-+... |. .+.| ..|.+..+.+++++|||- ++... .-+-.|..=.++|-.+|+-
T Consensus 144 f~~~da~~L~~~gyvG~-d~-e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG 221 (413)
T TIGR00382 144 FAIADATTLTEAGYVGE-DV-ENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEG 221 (413)
T ss_pred eEEechhhccccccccc-cH-HHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhc
Confidence 11122222221111111 10 0111 134455667889999995 67641 1112222236778888864
Q ss_pred C
Q 015536 268 Q 268 (405)
Q Consensus 268 Q 268 (405)
.
T Consensus 222 ~ 222 (413)
T TIGR00382 222 T 222 (413)
T ss_pred c
Confidence 3
No 69
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=65.78 E-value=1.2e+02 Score=33.76 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=69.3
Q ss_pred ecceeeEeecCCCCccchhHHHHHHHHHhhcCce--EEEecchhhhhc-----CCCCccccCCCC--cccccceEecCCc
Q 015536 166 VGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNT-----ASLAPKKDYQTN--RLIPGVLQLADGS 236 (405)
Q Consensus 166 ~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~--~~l~lt~~~Ln~-----~~~~P~kD~~t~--~L~~G~LQLa~gT 236 (405)
-.+.++.|.|.+| +-|+.+.+.|....++. .++.+.-..++. ..|--.+..-++ .-..|.+..++||
T Consensus 397 ~~~~pVLI~GE~G----TGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~G 472 (686)
T PRK15429 397 QSDSTVLILGETG----TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKS 472 (686)
T ss_pred CCCCCEEEECCCC----cCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchhhHHHhcCCC
Confidence 4567999999998 67888899998887753 344333333322 122211111111 2245788999999
Q ss_pred eEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 237 HLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 237 ~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
.|+|||- .|... =...|-.+++.+.+.- ....-.+++|++++..|.
T Consensus 473 tL~Ldei~~L~~~--------~Q~~L~~~l~~~~~~~--~g~~~~~~~~~RiI~~t~ 519 (686)
T PRK15429 473 SLFLDEVGDMPLE--------LQPKLLRVLQEQEFER--LGSNKIIQTDVRLIAATN 519 (686)
T ss_pred eEEEechhhCCHH--------HHHHHHHHHHhCCEEe--CCCCCcccceEEEEEeCC
Confidence 9999996 45433 1567777887764321 222345677888777775
No 70
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=65.07 E-value=99 Score=32.03 Aligned_cols=112 Identities=15% Similarity=0.145 Sum_probs=66.8
Q ss_pred cceeeEeecCCCCccchhHHHHHHHHHhhcCce--EEEecchhhhhcC-----CCCccccCCCC--cccccceEecCCce
Q 015536 167 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNTA-----SLAPKKDYQTN--RLIPGVLQLADGSH 237 (405)
Q Consensus 167 G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~--~~l~lt~~~Ln~~-----~~~P~kD~~t~--~L~~G~LQLa~gT~ 237 (405)
...++.+.|.++ +-+..+.+.+....++. .++.+....+... -|--.+..-++ .-..|.+..++||.
T Consensus 156 ~~~~vli~Ge~G----tGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (463)
T TIGR01818 156 SDITVLINGESG----TGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGT 231 (463)
T ss_pred cCCeEEEECCCC----CCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCe
Confidence 446788888887 66778888888887753 2333333322211 11111111111 22468899999999
Q ss_pred EEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 238 LIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 238 lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
|+|||. .|.... ...|-.+++.+.+.- -......++|++++..|.
T Consensus 232 l~l~ei~~l~~~~--------q~~ll~~l~~~~~~~--~~~~~~~~~~~rii~~~~ 277 (463)
T TIGR01818 232 LFLDEIGDMPLDA--------QTRLLRVLADGEFYR--VGGRTPIKVDVRIVAATH 277 (463)
T ss_pred EEEEchhhCCHHH--------HHHHHHHHhcCcEEE--CCCCceeeeeeEEEEeCC
Confidence 999996 455432 566777777665432 223345778888777664
No 71
>CHL00095 clpC Clp protease ATP binding subunit
Probab=63.36 E-value=34 Score=38.89 Aligned_cols=135 Identities=10% Similarity=0.100 Sum_probs=79.2
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhc-ccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhc----CceEEEec
Q 015536 130 SLLRHLTSILGNDGIAAHLMLLHLLS-RVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLL----PFTQCIPL 204 (405)
Q Consensus 130 ~li~~La~~l~GD~laAeyLLL~L~s-~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~----P~~~~l~l 204 (405)
.|-+.|...+.|...|-+.+.-++.. ++-......++| ++.+.|++| +-+..|.+.|+..+ .....+.+
T Consensus 502 ~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~--~~lf~Gp~G----vGKt~lA~~LA~~l~~~~~~~~~~d~ 575 (821)
T CHL00095 502 HMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIA--SFLFSGPTG----VGKTELTKALASYFFGSEDAMIRLDM 575 (821)
T ss_pred HHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCce--EEEEECCCC----CcHHHHHHHHHHHhcCCccceEEEEc
Confidence 45667777778999988888766642 222222334455 456899998 67888888888765 22333333
Q ss_pred chhhhhc----CCC--Ccc--ccCCCCcccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeec
Q 015536 205 TVNYLNT----ASL--APK--KDYQTNRLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFE 275 (405)
Q Consensus 205 t~~~Ln~----~~~--~P~--kD~~t~~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~ 275 (405)
+ .... ..+ .|- ..|+.+..-...+.-.+.+++++||- ++.+. =.++|-.+++...+.- ..
T Consensus 576 s--~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~--------v~~~Llq~le~g~~~d-~~ 644 (821)
T CHL00095 576 S--EYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPD--------IFNLLLQILDDGRLTD-SK 644 (821)
T ss_pred h--hccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHH--------HHHHHHHHhccCceec-CC
Confidence 2 1110 001 121 12222222234445566789999996 66544 2678889999888873 34
Q ss_pred ccceee
Q 015536 276 YYKMEM 281 (405)
Q Consensus 276 y~~~~~ 281 (405)
.+++.|
T Consensus 645 g~~v~~ 650 (821)
T CHL00095 645 GRTIDF 650 (821)
T ss_pred CcEEec
Confidence 555555
No 72
>PHA02244 ATPase-like protein
Probab=62.50 E-value=31 Score=35.87 Aligned_cols=108 Identities=10% Similarity=0.130 Sum_probs=61.2
Q ss_pred ceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceE--ecCCceEEEeCC-C
Q 015536 168 KLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQ--LADGSHLIIDET-Q 244 (405)
Q Consensus 168 ~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQ--La~gT~lviDEt-~ 244 (405)
..++.|.|.|| +-+..|...|....-+- ++.++ ..+....+.-..+ ..+.++.|.|- +.+|+.|+|||- .
T Consensus 119 ~~PVLL~GppG----tGKTtLA~aLA~~lg~p-fv~In-~l~d~~~L~G~i~-~~g~~~dgpLl~A~~~GgvLiLDEId~ 191 (383)
T PHA02244 119 NIPVFLKGGAG----SGKNHIAEQIAEALDLD-FYFMN-AIMDEFELKGFID-ANGKFHETPFYEAFKKGGLFFIDEIDA 191 (383)
T ss_pred CCCEEEECCCC----CCHHHHHHHHHHHhCCC-EEEEe-cChHHHhhccccc-ccccccchHHHHHhhcCCEEEEeCcCc
Confidence 45789999998 66777888877664322 22222 0011111110001 11234444431 578999999996 3
Q ss_pred CCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 245 LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 245 l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
+... -...|+.+++.+ .++.....+..+-+.++++.+.
T Consensus 192 a~p~--------vq~~L~~lLd~r--~l~l~g~~i~~h~~FRlIATsN 229 (383)
T PHA02244 192 SIPE--------ALIIINSAIANK--FFDFADERVTAHEDFRVISAGN 229 (383)
T ss_pred CCHH--------HHHHHHHHhccC--eEEecCcEEecCCCEEEEEeeC
Confidence 4333 267888999876 4455555555566777777665
No 73
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=61.87 E-value=1.8e+02 Score=29.05 Aligned_cols=55 Identities=11% Similarity=0.161 Sum_probs=37.9
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 337 HSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 337 ~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
-.+++++.++|.+- ++ | .+. ..+....+++.|-.+|...|...++.++++.|.+.
T Consensus 219 ~~~~~~~l~~i~~~-~~-~-~~G--d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~ 273 (365)
T TIGR02928 219 GVLDDGVIPLCAAL-AA-Q-EHG--DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEK 273 (365)
T ss_pred CCCChhHHHHHHHH-HH-H-hcC--CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 35788877777542 11 2 111 35666667777777788889999999999988654
No 74
>PRK15115 response regulator GlrR; Provisional
Probab=61.64 E-value=45 Score=34.41 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=72.0
Q ss_pred ecceeeEeecCCCCccchhHHHHHHHHHhhcCce--EEEecchhhhhc-----CCCCccccCCCC--cccccceEecCCc
Q 015536 166 VGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNT-----ASLAPKKDYQTN--RLIPGVLQLADGS 236 (405)
Q Consensus 166 ~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~--~~l~lt~~~Ln~-----~~~~P~kD~~t~--~L~~G~LQLa~gT 236 (405)
..+.++.+.|.++ +-+..+...+....++. .++.+....++. .-|--.+...++ ....|.+..++||
T Consensus 155 ~~~~~vli~Ge~G----tGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 155 QSDVSVLINGQSG----TGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred cCCCeEEEEcCCc----chHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 4567899999998 56777888888887753 334343332221 111111111122 3467899999999
Q ss_pred eEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 237 HLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 237 ~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
.|+|||- .|.... ...|-.+++.+++ ..-.......+|+.++..|.
T Consensus 231 tl~l~~i~~l~~~~--------q~~L~~~l~~~~~--~~~g~~~~~~~~~rii~~~~ 277 (444)
T PRK15115 231 TLFLDEIGDMPAPL--------QVKLLRVLQERKV--RPLGSNRDIDIDVRIISATH 277 (444)
T ss_pred EEEEEccccCCHHH--------HHHHHHHHhhCCE--EeCCCCceeeeeEEEEEeCC
Confidence 9999996 566542 5677788888765 22344456778888887665
No 75
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=59.75 E-value=45 Score=38.25 Aligned_cols=143 Identities=15% Similarity=0.172 Sum_probs=79.4
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhcccc-cccCceeecceeeEeecCCCCccchhHHHHHHHHHhhc----CceEEEec
Q 015536 130 SLLRHLTSILGNDGIAAHLMLLHLLSRVH-ARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLL----PFTQCIPL 204 (405)
Q Consensus 130 ~li~~La~~l~GD~laAeyLLL~L~s~V~-~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~----P~~~~l~l 204 (405)
.|-..|.+.+.|...|-+.+.-++..... ......++| ++.+.|++| +-+..|.+.|+..+ .....+.|
T Consensus 559 ~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~--~~lf~Gp~G----vGKT~lA~~La~~l~~~~~~~~~~dm 632 (852)
T TIGR03345 559 SLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLG--VFLLVGPSG----VGKTETALALAELLYGGEQNLITINM 632 (852)
T ss_pred HHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCce--EEEEECCCC----CCHHHHHHHHHHHHhCCCcceEEEeH
Confidence 35566666677888888887776643211 111234444 678999998 56777777777665 12233333
Q ss_pred chhhhhc----CCC--Ccc--ccCCCCcccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeec
Q 015536 205 TVNYLNT----ASL--APK--KDYQTNRLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFE 275 (405)
Q Consensus 205 t~~~Ln~----~~~--~P~--kD~~t~~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~ 275 (405)
..... ..| .|. -.|..+.+-...+.=.+.++++|||- ++++. -...|..++....+. |..
T Consensus 633 --se~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~--------v~~~Llq~ld~g~l~-d~~ 701 (852)
T TIGR03345 633 --SEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPD--------VLELFYQVFDKGVME-DGE 701 (852)
T ss_pred --HHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHH--------HHHHHHHHhhcceee-cCC
Confidence 22211 111 111 12222222223334457899999996 55543 267888999988875 445
Q ss_pred ccceeeeeccceEEee
Q 015536 276 YYKMEMIADVQMLILS 291 (405)
Q Consensus 276 y~~~~~~~dl~~lvLS 291 (405)
...+.|. + .++|++
T Consensus 702 Gr~vd~~-n-~iiI~T 715 (852)
T TIGR03345 702 GREIDFK-N-TVILLT 715 (852)
T ss_pred CcEEecc-c-cEEEEe
Confidence 5555544 3 444444
No 76
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=59.29 E-value=10 Score=36.40 Aligned_cols=180 Identities=18% Similarity=0.247 Sum_probs=103.0
Q ss_pred EeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCC-CCcccccceEecCCceEEEeCC-CCCcCc
Q 015536 172 NLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQ-TNRLIPGVLQLADGSHLIIDET-QLETGT 249 (405)
Q Consensus 172 nl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~-t~~L~~G~LQLa~gT~lviDEt-~l~~G~ 249 (405)
.+.|..+ +-+....+.|+..+=+-.++ .|- .+..|+. -+++-.|+.|- |.-+|+||. .|+.+.
T Consensus 36 ~~~Gpag----tGKtetik~La~~lG~~~~v------fnc---~~~~~~~~l~ril~G~~~~--GaW~cfdefnrl~~~v 100 (231)
T PF12774_consen 36 ALSGPAG----TGKTETIKDLARALGRFVVV------FNC---SEQMDYQSLSRILKGLAQS--GAWLCFDEFNRLSEEV 100 (231)
T ss_dssp EEESSTT----SSHHHHHHHHHHCTT--EEE------EET---TSSS-HHHHHHHHHHHHHH--T-EEEEETCCCSSHHH
T ss_pred CCcCCCC----CCchhHHHHHHHHhCCeEEE------ecc---cccccHHHHHHHHHHHhhc--CchhhhhhhhhhhHHH
Confidence 4566665 66888888888877776666 111 1112222 14788899884 999999995 799888
Q ss_pred ccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec----CCCCcccCceeeeeccCCCCCCCCCChhhHHHH
Q 015536 250 LNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE----GKSNIVPADLVIPFQPSSAASFEVVPAETLEAW 325 (405)
Q Consensus 250 L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~----gKS~~lp~d~~vpl~~~~~~~~~~~~~~~l~~~ 325 (405)
|.-.+. .+++|++.+..+.-.+.|....+.++-+..+.+... |++ -+|.++...++|..-. . +|+..+
T Consensus 101 LS~i~~-~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~-~LP~nLk~lFRpvam~-----~-PD~~~I 172 (231)
T PF12774_consen 101 LSVISQ-QIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRS-ELPENLKALFRPVAMM-----V-PDLSLI 172 (231)
T ss_dssp HHHHHH-HHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC---S-HHHCTTEEEEE-------S---HHHH
T ss_pred HHHHHH-HHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcc-cCCHhHHHHhheeEEe-----C-CCHHHH
Confidence 777774 699999999988888888888877777766555443 233 5666666555554321 1 233322
Q ss_pred HHHHHHhccCCCCCChhHHHHHHHHHHHHHhc--CC---CCCHHHHHHHHHHHHHH
Q 015536 326 RWYLASVRSLPHSIESDMQKVVESDLVAARQA--DR---SLGGQDLSRLLTMGRLM 376 (405)
Q Consensus 326 R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~--~~---~it~~~L~~~L~laRll 376 (405)
=.-+.. ...+.=...+++.|..-|--.++. .+ ..+-+.+...|++|-.+
T Consensus 173 ~ei~L~--s~GF~~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~~~ 226 (231)
T PF12774_consen 173 AEILLL--SQGFKDAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAGSL 226 (231)
T ss_dssp HHHHHH--CCCTSSHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHHHH
T ss_pred HHHHHH--HcCchhHHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHHHH
Confidence 222222 134554556677776666554442 11 25567777777665443
No 77
>PRK06893 DNA replication initiation factor; Validated
Probab=59.07 E-value=1.6e+02 Score=27.74 Aligned_cols=177 Identities=15% Similarity=0.122 Sum_probs=86.6
Q ss_pred eeeEeecCCCCccchhHHHHHHHHHhhc----CceEEEecchhhhhcCCCCccccCCCCcccccceEecCCceEEEeCCC
Q 015536 169 LSLNLTCLSKESVSVFGNQVRLSVQNLL----PFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQ 244 (405)
Q Consensus 169 ~sLnl~~~p~~~~~~~~~~L~~~l~~l~----P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa~gT~lviDEt~ 244 (405)
-++-|.|.|| +-|+.|...+.+-+ +.+.|++++...- +.+ .+.. .+.+...++|||-.
T Consensus 40 ~~l~l~G~~G----~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~----~~~-------~~~~---~~~~~dlLilDDi~ 101 (229)
T PRK06893 40 PFFYIWGGKS----SGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY----FSP-------AVLE---NLEQQDLVCLDDLQ 101 (229)
T ss_pred CeEEEECCCC----CCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh----hhH-------HHHh---hcccCCEEEEeChh
Confidence 3578999998 56788887776543 6788887752110 111 1111 13356789999975
Q ss_pred CCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCCCcccCceeeeeccCCC-------CCCCCC
Q 015536 245 LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSA-------ASFEVV 317 (405)
Q Consensus 245 l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~~lp~d~~vpl~~~~~-------~~~~~~ 317 (405)
.-.|+ ... -.+|.++++.- |+ -.-.++|++.... |.++...+.+-.+ -.+.+.
T Consensus 102 ~~~~~--~~~---~~~l~~l~n~~---~~---------~~~~illits~~~---p~~l~~~~~~L~sRl~~g~~~~l~~p 161 (229)
T PRK06893 102 AVIGN--EEW---ELAIFDLFNRI---KE---------QGKTLLLISADCS---PHALSIKLPDLASRLTWGEIYQLNDL 161 (229)
T ss_pred hhcCC--hHH---HHHHHHHHHHH---HH---------cCCcEEEEeCCCC---hHHccccchhHHHHHhcCCeeeCCCC
Confidence 44342 111 12455554421 11 1334455554332 2333322211111 012222
Q ss_pred ChhhHHHHHHHHH-HhccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 318 PAETLEAWRWYLA-SVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 318 ~~~~l~~~R~Yi~-~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
+++ ..+..|. .+...+..+++|+.++|-..+ ++ +.+.|...|.---..++..++ .+|.+.+++++.
T Consensus 162 d~e---~~~~iL~~~a~~~~l~l~~~v~~~L~~~~------~~--d~r~l~~~l~~l~~~~~~~~~-~it~~~v~~~L~ 228 (229)
T PRK06893 162 TDE---QKIIVLQRNAYQRGIELSDEVANFLLKRL------DR--DMHTLFDALDLLDKASLQAQR-KLTIPFVKEILG 228 (229)
T ss_pred CHH---HHHHHHHHHHHHcCCCCCHHHHHHHHHhc------cC--CHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhc
Confidence 332 2222222 222346889999998884433 22 234444444421112333344 699999888764
No 78
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.61 E-value=74 Score=32.97 Aligned_cols=23 Identities=9% Similarity=-0.143 Sum_probs=17.2
Q ss_pred eeEeecCCCCccchhHHHHHHHHHhhc
Q 015536 170 SLNLTCLSKESVSVFGNQVRLSVQNLL 196 (405)
Q Consensus 170 sLnl~~~p~~~~~~~~~~L~~~l~~l~ 196 (405)
++-|.|.|| +-+..|.+.+..-.
T Consensus 38 ~ilL~GppG----tGKTtLA~~ia~~~ 60 (413)
T PRK13342 38 SMILWGPPG----TGKTTLARIIAGAT 60 (413)
T ss_pred eEEEECCCC----CCHHHHHHHHHHHh
Confidence 788999998 56777777776543
No 79
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=58.11 E-value=22 Score=38.23 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=69.9
Q ss_pred cceeeEeecCCCCccchhHHHHHHHHHhhcCce--EEEecchhhhhc-----CCCCccccCCCC--cccccceEecCCce
Q 015536 167 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNT-----ASLAPKKDYQTN--RLIPGVLQLADGSH 237 (405)
Q Consensus 167 G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~--~~l~lt~~~Ln~-----~~~~P~kD~~t~--~L~~G~LQLa~gT~ 237 (405)
.+.++.|.|.+| +-++.+.+++....++. .++.+.-+.+.. .-|-.....-++ .-..|.+..++||.
T Consensus 226 ~~~pvlI~GE~G----tGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~Gt 301 (520)
T PRK10820 226 LDAPLLITGDTG----TGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGS 301 (520)
T ss_pred CCCCEEEECCCC----ccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCE
Confidence 466899999998 67888899998877764 345444333322 112211111111 23568899999999
Q ss_pred EEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 238 LIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 238 lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
|+|||- .|.... ...|-.+++.++. .-....-+.++|++++.-|.
T Consensus 302 L~LdeI~~L~~~~--------Q~~Ll~~l~~~~~--~~~g~~~~~~~~vRiI~st~ 347 (520)
T PRK10820 302 VLLDEIGEMSPRM--------QAKLLRFLNDGTF--RRVGEDHEVHVDVRVICATQ 347 (520)
T ss_pred EEEeChhhCCHHH--------HHHHHHHHhcCCc--ccCCCCcceeeeeEEEEecC
Confidence 999996 465431 4567777776642 22233456778888766554
No 80
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=55.93 E-value=1.5e+02 Score=33.44 Aligned_cols=180 Identities=16% Similarity=0.115 Sum_probs=86.8
Q ss_pred eeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCccccc--ce-EecCCceEEEeCC-CC
Q 015536 170 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPG--VL-QLADGSHLIIDET-QL 245 (405)
Q Consensus 170 sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G--~L-QLa~gT~lviDEt-~l 245 (405)
++-|.|.|| +-+..+...+..-.. ..++.+.... ...++. ...+... .+ ....++.++|||- .|
T Consensus 54 slLL~GPpG----tGKTTLA~aIA~~~~-~~f~~lna~~------~~i~di-r~~i~~a~~~l~~~~~~~IL~IDEIh~L 121 (725)
T PRK13341 54 SLILYGPPG----VGKTTLARIIANHTR-AHFSSLNAVL------AGVKDL-RAEVDRAKERLERHGKRTILFIDEVHRF 121 (725)
T ss_pred eEEEECCCC----CCHHHHHHHHHHHhc-Ccceeehhhh------hhhHHH-HHHHHHHHHHhhhcCCceEEEEeChhhC
Confidence 788999998 667777777766543 2223222110 111110 0001110 01 1235789999996 45
Q ss_pred CcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCCCcccCceeeeeccCCCCCCCCCChhhH-HH
Q 015536 246 ETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETL-EA 324 (405)
Q Consensus 246 ~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~~lp~d~~vpl~~~~~~~~~~~~~~~l-~~ 324 (405)
...+ ..+|-..++...+-.-..... .....++.-++|+ +. .+.+ .+.+.+++ ..
T Consensus 122 n~~q--------QdaLL~~lE~g~IiLI~aTTe-np~~~l~~aL~SR-------~~-v~~l--------~pLs~edi~~I 176 (725)
T PRK13341 122 NKAQ--------QDALLPWVENGTITLIGATTE-NPYFEVNKALVSR-------SR-LFRL--------KSLSDEDLHQL 176 (725)
T ss_pred CHHH--------HHHHHHHhcCceEEEEEecCC-ChHhhhhhHhhcc-------cc-ceec--------CCCCHHHHHHH
Confidence 4332 356666776654332211100 0000122233343 11 1111 22333443 56
Q ss_pred HHHHHHHh-c---cCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC--CCCCHHHHHHHH
Q 015536 325 WRWYLASV-R---SLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGE--TSLSLEHWQMVK 394 (405)
Q Consensus 325 ~R~Yi~~a-r---~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~--~~lt~e~w~~a~ 394 (405)
++.++... + .....|++++.++|.+ ..+. +.+++...|..+-..+...+. ..+|.+.++.++
T Consensus 177 L~~~l~~~~~~~g~~~v~I~deaL~~La~------~s~G--D~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l 244 (725)
T PRK13341 177 LKRALQDKERGYGDRKVDLEPEAEKHLVD------VANG--DARSLLNALELAVESTPPDEDGLIDITLAIAEESI 244 (725)
T ss_pred HHHHHHHHHhhcCCcccCCCHHHHHHHHH------hCCC--CHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHH
Confidence 66666532 2 2357899998888744 2222 467777777654433322222 237777777765
No 81
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=54.53 E-value=63 Score=33.40 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=67.4
Q ss_pred ecceeeEeecCCCCccchhHHHHHHHHHhhcCce--EEEecchhhhh-----cCCCCccccCCCC--cccccceEecCCc
Q 015536 166 VGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLN-----TASLAPKKDYQTN--RLIPGVLQLADGS 236 (405)
Q Consensus 166 ~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~--~~l~lt~~~Ln-----~~~~~P~kD~~t~--~L~~G~LQLa~gT 236 (405)
....++.+.|.+| +-++.+...+..-.++. .++.+....++ +.-|--.+..-++ .-..|.+..++||
T Consensus 164 ~~~~~vli~Ge~G----tGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 239 (457)
T PRK11361 164 LSQASVLISGESG----TGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEG 239 (457)
T ss_pred CCCcEEEEEcCCC----ccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCC
Confidence 3456889999987 56777777776655542 23323222221 1111111111111 2357899999999
Q ss_pred eEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 237 HLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 237 ~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
.++|||. .|.... ...|-.+++.+.+ .-....-.++.|+.++..|.
T Consensus 240 tl~ld~i~~l~~~~--------q~~L~~~l~~~~~--~~~~~~~~~~~~~rii~~t~ 286 (457)
T PRK11361 240 TLLLDEIGEMPLVL--------QAKLLRILQEREF--ERIGGHQTIKVDIRIIAATN 286 (457)
T ss_pred EEEEechhhCCHHH--------HHHHHHHHhcCcE--EeCCCCceeeeceEEEEeCC
Confidence 9999995 566442 5667777777643 32233446788888877775
No 82
>PRK09087 hypothetical protein; Validated
Probab=53.24 E-value=2.1e+02 Score=27.18 Aligned_cols=51 Identities=10% Similarity=0.019 Sum_probs=32.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH--HHHcCCCCCCHHHHHHHHHH
Q 015536 335 LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLM--SASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 335 ~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRll--A~s~g~~~lt~e~w~~a~~L 396 (405)
.+..+++|+.++|-+.+ ++ +-+.+...+ .|+- |+..| ..+|..-++++++-
T Consensus 169 ~~~~l~~ev~~~La~~~------~r--~~~~l~~~l--~~L~~~~~~~~-~~it~~~~~~~l~~ 221 (226)
T PRK09087 169 RQLYVDPHVVYYLVSRM------ER--SLFAAQTIV--DRLDRLALERK-SRITRALAAEVLNE 221 (226)
T ss_pred cCCCCCHHHHHHHHHHh------hh--hHHHHHHHH--HHHHHHHHHhC-CCCCHHHHHHHHHh
Confidence 46889999999986554 11 133333333 3443 44445 56899999998863
No 83
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=51.91 E-value=1.4e+02 Score=29.45 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=75.1
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceE---EEecchh
Q 015536 131 LLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ---CIPLTVN 207 (405)
Q Consensus 131 li~~La~~l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~---~l~lt~~ 207 (405)
..++|...+.||....++|+-.+=.....+ ....++ +-+.|..+ .-++.+.++|+.|+.... ...+++.
T Consensus 43 ~~~~L~~~~~~d~~~~~~l~~~lg~~L~~~---~~~~~~-~~l~G~g~----nGKStl~~~l~~l~G~~~~~~~~~~~~~ 114 (304)
T TIGR01613 43 WNGFLLETFGGDNELIEYLQRVIGYSLTGN---YTEQKL-FFLYGNGG----NGKSTFQNLLSNLLGDYATTAVASLKMN 114 (304)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhHHhcCC---CCceEE-EEEECCCC----CcHHHHHHHHHHHhChhhccCCcchhhh
Confidence 445888889999877777765543332221 222333 55666543 568999999999998754 2223333
Q ss_pred hhhcCCCCccccCCCCcccccceEecCCceEEEeCCCCCcCcccccchhHHHHHHHHHHhCceeeeeccc-ceeeeeccc
Q 015536 208 YLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYY-KMEMIADVQ 286 (405)
Q Consensus 208 ~Ln~~~~~P~kD~~t~~L~~G~LQLa~gT~lviDEt~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~-~~~~~~dl~ 286 (405)
.++..+| +.--|..--.++.||.. .| ...|...|+.++..-+|..+..|. .+++.-...
T Consensus 115 ~~~~~~f-------------~~a~l~gk~l~~~~E~~--~~-----~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~ 174 (304)
T TIGR01613 115 EFQEHRF-------------GLARLEGKRAVIGDEVQ--KG-----YRDDESTFKSLTGGDTITARFKNKDPFEFTPKFT 174 (304)
T ss_pred hccCCCc-------------hhhhhcCCEEEEecCCC--CC-----ccccHHhhhhhhcCCeEEeecccCCcEEEEEeeE
Confidence 3322110 11113334456777763 22 223567888888888888776663 344444444
Q ss_pred eEEee
Q 015536 287 MLILS 291 (405)
Q Consensus 287 ~lvLS 291 (405)
+++.|
T Consensus 175 ~i~~t 179 (304)
T TIGR01613 175 LVQST 179 (304)
T ss_pred EEEEc
Confidence 44444
No 84
>CHL00176 ftsH cell division protein; Validated
Probab=51.83 E-value=2.3e+02 Score=31.57 Aligned_cols=36 Identities=17% Similarity=0.389 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 360 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 360 ~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
..+..||..+++-|.+.|...+...++.++++.|++
T Consensus 386 G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~ 421 (638)
T CHL00176 386 GFSGADLANLLNEAAILTARRKKATITMKEIDTAID 421 (638)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 468899999999999999999999999999999975
No 85
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=51.35 E-value=2.8e+02 Score=28.18 Aligned_cols=214 Identities=17% Similarity=0.152 Sum_probs=121.7
Q ss_pred CcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccC
Q 015536 141 NDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDY 220 (405)
Q Consensus 141 GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~ 220 (405)
|..-+++-|-+.+-+.- .|.+.+ =|+.|.|+|| .-+..|...+++=+-...-+ | + .|.-+.
T Consensus 30 GQ~~vk~~L~ifI~AAk-~r~e~l----DHvLl~GPPG----lGKTTLA~IIA~Emgvn~k~--t-----s---Gp~leK 90 (332)
T COG2255 30 GQEKVKEQLQIFIKAAK-KRGEAL----DHVLLFGPPG----LGKTTLAHIIANELGVNLKI--T-----S---GPALEK 90 (332)
T ss_pred ChHHHHHHHHHHHHHHH-hcCCCc----CeEEeeCCCC----CcHHHHHHHHHHHhcCCeEe--c-----c---cccccC
Confidence 56666666655555431 122211 1789999998 66888888886544322222 1 0 111110
Q ss_pred CCCcccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeee--cccceeeeeccceEEeecC--CC
Q 015536 221 QTNRLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNF--EYYKMEMIADVQMLILSEG--KS 295 (405)
Q Consensus 221 ~t~~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF--~y~~~~~~~dl~~lvLS~g--KS 295 (405)
.+.|.+=.--|-.|-+|.|||. .|... | -.-|-.+|+.=+|..-- ....-.+.+|+|.-.|=.+ +.
T Consensus 91 -~gDlaaiLt~Le~~DVLFIDEIHrl~~~------v--EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~ 161 (332)
T COG2255 91 -PGDLAAILTNLEEGDVLFIDEIHRLSPA------V--EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA 161 (332)
T ss_pred -hhhHHHHHhcCCcCCeEEEehhhhcChh------H--HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccc
Confidence 0122222223667899999996 45543 1 34455667755554332 1223334555554444321 22
Q ss_pred CcccCceeeeeccCCCCC--CCCCChhhHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015536 296 NIVPADLVIPFQPSSAAS--FEVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMG 373 (405)
Q Consensus 296 ~~lp~d~~vpl~~~~~~~--~~~~~~~~l~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~la 373 (405)
.-+.=|+++--.-. .+.+++++|..+= .-.++.++..++++....| . |++.. |++-=.|+|+=-
T Consensus 162 ----G~lt~PLrdRFGi~~rlefY~~~eL~~Iv--~r~a~~l~i~i~~~~a~eI-----A-~rSRG--TPRIAnRLLrRV 227 (332)
T COG2255 162 ----GMLTNPLRDRFGIIQRLEFYTVEELEEIV--KRSAKILGIEIDEEAALEI-----A-RRSRG--TPRIANRLLRRV 227 (332)
T ss_pred ----ccccchhHHhcCCeeeeecCCHHHHHHHH--HHHHHHhCCCCChHHHHHH-----H-HhccC--CcHHHHHHHHHH
Confidence 11222333322211 2335666665431 2345678999999988877 3 33333 688889999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHH
Q 015536 374 RLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 374 RllA~s~g~~~lt~e~w~~a~~L 396 (405)
|=.|--.|...++.+..++|+.+
T Consensus 228 RDfa~V~~~~~I~~~ia~~aL~~ 250 (332)
T COG2255 228 RDFAQVKGDGDIDRDIADKALKM 250 (332)
T ss_pred HHHHHHhcCCcccHHHHHHHHHH
Confidence 99999999999999999999875
No 86
>CHL00195 ycf46 Ycf46; Provisional
Probab=49.31 E-value=2.2e+02 Score=30.63 Aligned_cols=186 Identities=11% Similarity=0.141 Sum_probs=93.5
Q ss_pred eeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEe---cCCceEEEeCC-CC
Q 015536 170 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQL---ADGSHLIIDET-QL 245 (405)
Q Consensus 170 sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQL---a~gT~lviDEt-~l 245 (405)
.+.|.|+|| +-++.+.+.++.-.-.. ++.++...+-+.. -.++.....-+++. ....++.|||. ++
T Consensus 261 GILL~GPpG----TGKTllAkaiA~e~~~~-~~~l~~~~l~~~~-----vGese~~l~~~f~~A~~~~P~IL~IDEID~~ 330 (489)
T CHL00195 261 GLLLVGIQG----TGKSLTAKAIANDWQLP-LLRLDVGKLFGGI-----VGESESRMRQMIRIAEALSPCILWIDEIDKA 330 (489)
T ss_pred eEEEECCCC----CcHHHHHHHHHHHhCCC-EEEEEhHHhcccc-----cChHHHHHHHHHHHHHhcCCcEEEehhhhhh
Confidence 488999998 67888888887765432 2334444432211 01111111122222 23578999994 44
Q ss_pred CcC--cccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEee-cCCCCcc--------cCceeeeeccCCCCCC
Q 015536 246 ETG--TLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILS-EGKSNIV--------PADLVIPFQPSSAASF 314 (405)
Q Consensus 246 ~~G--~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS-~gKS~~l--------p~d~~vpl~~~~~~~~ 314 (405)
-.+ .-.+.|..| +.+..++.+-. + .+-+++|+. ..+...+ -||..+.+..-
T Consensus 331 ~~~~~~~~d~~~~~-rvl~~lL~~l~---~---------~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP----- 392 (489)
T CHL00195 331 FSNSESKGDSGTTN-RVLATFITWLS---E---------KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLP----- 392 (489)
T ss_pred hccccCCCCchHHH-HHHHHHHHHHh---c---------CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCc-----
Confidence 321 112334433 23333333211 0 122343333 2222111 15555544211
Q ss_pred CCCChhhHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 015536 315 EVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVK 394 (405)
Q Consensus 315 ~~~~~~~l~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~ 394 (405)
-.++..+.|+.|+...+... ..+.-.+ .+. +.....|..|+..++.-|...|...+ ..++.+|+..|+
T Consensus 393 --~~~eR~~Il~~~l~~~~~~~--~~~~dl~-----~La--~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl~~a~ 460 (489)
T CHL00195 393 --SLEEREKIFKIHLQKFRPKS--WKKYDIK-----KLS--KLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTDDILLAL 460 (489)
T ss_pred --CHHHHHHHHHHHHhhcCCCc--ccccCHH-----HHH--hhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHHHHHHHH
Confidence 02345678888887754211 1111001 111 12235788999999998888888776 468999998876
Q ss_pred H
Q 015536 395 E 395 (405)
Q Consensus 395 ~ 395 (405)
+
T Consensus 461 ~ 461 (489)
T CHL00195 461 K 461 (489)
T ss_pred H
Confidence 4
No 87
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=47.76 E-value=1.1e+02 Score=23.85 Aligned_cols=52 Identities=13% Similarity=0.325 Sum_probs=32.9
Q ss_pred HHhccCC--CCCChhHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 330 ASVRSLP--HSIESDMQKV---VESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 330 ~~ar~~~--~~i~~e~~~~---Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
..+++.+ ..+++++.+. |.++||. ..+..|..+|+-+|.++++..|.+..++
T Consensus 7 ~Lv~~iDp~~~ld~~vee~Ll~laddFv~--------------~v~~~ac~lAKhR~s~tle~~Dv~~~Le 63 (68)
T PF03847_consen 7 ELVKQIDPNEKLDPDVEELLLELADDFVD--------------DVVSFACRLAKHRKSSTLEVKDVQLHLE 63 (68)
T ss_dssp HHHHCC-SS----HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 3345543 4688877775 6778876 2566778889999999999998887654
No 88
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=47.42 E-value=3.1e+02 Score=27.60 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=38.8
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 337 HSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 337 ~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
-.+++++.++|.+..-. ... ..+....+++-|-..|...|...++.+++++|.+-
T Consensus 227 ~~~~~~~l~~i~~~~~~--~~G---d~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~ 281 (394)
T PRK00411 227 GVVDDEVLDLIADLTAR--EHG---DARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEK 281 (394)
T ss_pred CCCCHhHHHHHHHHHHH--hcC---cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 36888888888663321 111 24555566676667888899999999999988863
No 89
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=45.45 E-value=62 Score=33.21 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=67.3
Q ss_pred ceeeEeecCCCCccchhHHHHHHHHHhhcCce--EEEecchhhhhcCC-----CCccccCCCC--cccccceEecCCceE
Q 015536 168 KLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNTAS-----LAPKKDYQTN--RLIPGVLQLADGSHL 238 (405)
Q Consensus 168 ~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~--~~l~lt~~~Ln~~~-----~~P~kD~~t~--~L~~G~LQLa~gT~l 238 (405)
..++.+.|.++ +-++.+.+.+....++. .++.+....++... |-=.+...++ .-..|.+.-++||.|
T Consensus 162 ~~~vli~ge~g----~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl 237 (441)
T PRK10365 162 EATVLIHGDSG----TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 (441)
T ss_pred CCeEEEEecCC----CCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEE
Confidence 45778888886 66788888888777754 34444333332110 1101111111 235789999999999
Q ss_pred EEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 239 IIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 239 viDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
+|||. .|.... ...|..+++.+.+.- ....-..++|+.++..|.
T Consensus 238 ~ldei~~l~~~~--------q~~l~~~l~~~~~~~--~~~~~~~~~~~rii~~t~ 282 (441)
T PRK10365 238 FLDEIGDISPMM--------QVRLLRAIQEREVQR--VGSNQTISVDVRLIAATH 282 (441)
T ss_pred EEeccccCCHHH--------HHHHHHHHccCcEEe--CCCCceeeeceEEEEeCC
Confidence 99996 565442 466777787776422 233345677888877775
No 90
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=42.77 E-value=1e+02 Score=23.76 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=38.5
Q ss_pred hccCCC-CCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 332 VRSLPH-SIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 332 ar~~~~-~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
+++.+. .+++++.+.+.++. ..-+...+.-|-.++.--++++|+.+|.+.|++
T Consensus 12 a~~~Gi~ris~~a~~~l~~~~-----------e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 12 AESLGIGNLSDEAAKLLAEDV-----------EYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred HHHCCCccccHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 344443 58888887776654 234555777777888888999999999998863
No 91
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=36.13 E-value=81 Score=33.45 Aligned_cols=132 Identities=15% Similarity=0.239 Sum_probs=0.0
Q ss_pred cCCceEEEeC-CCCCcCc------ccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecC-----CCCccc-
Q 015536 233 ADGSHLIIDE-TQLETGT------LNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEG-----KSNIVP- 299 (405)
Q Consensus 233 a~gT~lviDE-t~l~~G~------L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~g-----KS~~lp- 299 (405)
+..|.++||| .|+.... ....|| .++|-.+|+--+|...| ..++|+-=.-|.+.+ .|-|+|
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGV--Q~~LLkilEGt~v~~k~----~~v~T~~ILFI~~GAF~~~kp~DlIPE 319 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGV--QRDLLPIVEGSTVNTKY----GMVKTDHILFIAAGAFQLAKPSDLIPE 319 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccch--hccccccccCceeeecc----eeEECCceeEEecCCcCCCChhhccHH
Q ss_pred ----CceeeeeccCCCCC-CCCCChhhHHHHHHHHHHhccCCC--CCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 015536 300 ----ADLVIPFQPSSAAS-FEVVPAETLEAWRWYLASVRSLPH--SIESDMQKVVESDLVAARQADRSLGGQDLSRLL 370 (405)
Q Consensus 300 ----~d~~vpl~~~~~~~-~~~~~~~~l~~~R~Yi~~ar~~~~--~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L 370 (405)
+.+.+.|++-...+ ..-.++..=..+|+|-+..+..+. .+++++.+.|.+.=.++=+..+.+.++-||..|
T Consensus 320 l~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrtil 397 (441)
T TIGR00390 320 LQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVL 397 (441)
T ss_pred HhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHH
No 92
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=35.82 E-value=39 Score=34.28 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=78.5
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHH-HHHHHHHhhcCceEEEecch
Q 015536 128 RESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGN-QVRLSVQNLLPFTQCIPLTV 206 (405)
Q Consensus 128 R~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~-~L~~~l~~l~P~~~~l~lt~ 206 (405)
...|-.-|+..|+|..+|++-++=.+-|-.++.. +.-.+-|-+.|-+| .+..+++ .+.+.+-..-=+|-|+-.-+
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~---p~KPLvLSfHG~tG-TGKN~Va~iiA~n~~~~Gl~S~~V~~fv 148 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWANPN---PRKPLVLSFHGWTG-TGKNYVAEIIAENLYRGGLRSPFVHHFV 148 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC---CCCCeEEEecCCCC-CchhHHHHHHHHHHHhccccchhHHHhh
Confidence 4557778889999999999999988888766544 44567888999998 3333333 33333333333333332222
Q ss_pred hhhhcCCCCccc----cCCCC--cccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHH
Q 015536 207 NYLNTASLAPKK----DYQTN--RLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLME 266 (405)
Q Consensus 207 ~~Ln~~~~~P~k----D~~t~--~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~ 266 (405)
+.++ .|.+ ||... .=..|.+|.=..+.+|+||. ||.+|= +++|+-.+.
T Consensus 149 at~h----FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gL--------ld~lkpfLd 203 (344)
T KOG2170|consen 149 ATLH----FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGL--------LDVLKPFLD 203 (344)
T ss_pred hhcc----CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhH--------HHHHhhhhc
Confidence 2211 3332 33211 33567888888999999995 999994 777887765
No 93
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=34.54 E-value=3.8e+02 Score=24.80 Aligned_cols=54 Identities=9% Similarity=0.011 Sum_probs=38.0
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 333 RSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 333 r~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
+..+..+++++.+++.+.+ . =+.++|..+|.--...|+..+ ..+|....++++.
T Consensus 171 ~~~~v~l~~~al~~L~~~~------~--gn~~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 171 AERGLQLADEVPDYLLTHF------R--RDMPSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HHcCCCCCHHHHHHHHHhc------c--CCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 3457899999999886533 2 246777777776555566666 7899888888764
No 94
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.53 E-value=2.6e+02 Score=29.82 Aligned_cols=60 Identities=18% Similarity=0.162 Sum_probs=32.5
Q ss_pred HHHHHHHHh-ccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 324 AWRWYLASV-RSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 324 ~~R~Yi~~a-r~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
.++.++..+ +..+..+++++.++|-+ ..+. +.+....+|. .++. +....+|.++++.++.
T Consensus 180 el~~~L~~i~~~egi~i~~eal~~Ia~------~s~G--dlR~aln~Le---~l~~-~~~~~It~e~V~~~l~ 240 (472)
T PRK14962 180 LIIKRLQEVAEAEGIEIDREALSFIAK------RASG--GLRDALTMLE---QVWK-FSEGKITLETVHEALG 240 (472)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH------HhCC--CHHHHHHHHH---HHHH-hcCCCCCHHHHHHHHc
Confidence 344444443 33467899998888743 2222 2333333332 2222 2233599999988764
No 95
>PRK14709 hypothetical protein; Provisional
Probab=32.15 E-value=6.5e+02 Score=26.82 Aligned_cols=125 Identities=11% Similarity=0.026 Sum_probs=69.9
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhh
Q 015536 129 ESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNY 208 (405)
Q Consensus 129 ~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~ 208 (405)
.....+|..++.||....+||.-.+-.....+.. -+.-+-+.|.-+ .-++.+.++|..|+..- ....+++.
T Consensus 170 P~~~~fL~~~~~gD~e~~~~lq~~lGy~L~g~~~----~q~~~~l~G~G~----NGKSt~~~~i~~llG~~-~~~~~~~~ 240 (469)
T PRK14709 170 PRWLRFLDEATGGDDELIRFLQQWCGYCLTGDTR----EHALVFVFGGGG----NGKSVFLNVLAGILGDY-ATTAAMDT 240 (469)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHhhHhhcCCCc----cceEEEEECCCC----CcHHHHHHHHHHHHhhh-cccCCHHH
Confidence 3467899999999999888876654444333222 123355566432 45888899998888752 33445555
Q ss_pred hhcCCCCccccCCCCcccccceEecCCceEEEeCCCCCcCcccccchhHHHHHHHHHHhCceeeeeccc
Q 015536 209 LNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYY 277 (405)
Q Consensus 209 Ln~~~~~P~kD~~t~~L~~G~LQLa~gT~lviDEt~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~ 277 (405)
+.... .+ +-..+.-.|..-..++.+|+. +|. ..|-..|+.+.---.|...|.|.
T Consensus 241 ~~~~~----~~----~~~~~lA~L~Gkrlv~~~E~~--~g~-----~~~~~~iK~ltGGD~i~ar~~~k 294 (469)
T PRK14709 241 FTASK----HD----RHPTDLAMLRGARLVTASETE--EGR-----AWAEARIKQMTGGDTITARFMRQ 294 (469)
T ss_pred Hhhcc----cc----CCchhhHhhcCCeEEEeecCC--ccc-----ccCHHHHHhhhCCCcEEeecccC
Confidence 54321 11 001122223333345567763 331 12456777777767777666553
No 96
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=30.61 E-value=6e+02 Score=25.92 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=50.7
Q ss_pred eeEeecCCCCccchhHHHHHHHHHhhcCceE-EEecchh----hhhcCCCCccccCCC-CcccccceEec--CCceEEEe
Q 015536 170 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ-CIPLTVN----YLNTASLAPKKDYQT-NRLIPGVLQLA--DGSHLIID 241 (405)
Q Consensus 170 sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~-~l~lt~~----~Ln~~~~~P~kD~~t-~~L~~G~LQLa--~gT~lviD 241 (405)
+|.|.|.|| +-|+.+.+.++.-+-.-. .+.++.. .|-.......++... .....|.|-.| .|..+++|
T Consensus 66 ~ilL~G~pG----tGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlD 141 (327)
T TIGR01650 66 RVMVQGYHG----TGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFD 141 (327)
T ss_pred cEEEEeCCC----ChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEec
Confidence 589999998 567777776655543322 2222211 111111111223221 25677887554 47779999
Q ss_pred CC-CCCcCcccccchhHHHHHHHHHHh-Cceee
Q 015536 242 ET-QLETGTLNSTGVENARLLKNLMEF-QKVEY 272 (405)
Q Consensus 242 Et-~l~~G~L~~~Gv~N~~aL~~li~~-Q~v~Y 272 (405)
|- ...+.. ..+|+.+++. .+|..
T Consensus 142 Ein~a~p~~--------~~~L~~lLE~~~~l~i 166 (327)
T TIGR01650 142 EYDAGRPDV--------MFVIQRVLEAGGKLTL 166 (327)
T ss_pred hhhccCHHH--------HHHHHHHhccCCeEEE
Confidence 96 444332 6788999984 34444
No 97
>PLN03025 replication factor C subunit; Provisional
Probab=29.93 E-value=3.9e+02 Score=26.44 Aligned_cols=56 Identities=14% Similarity=-0.032 Sum_probs=29.9
Q ss_pred HHHHHHHH-hccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 015536 324 AWRWYLAS-VRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQM 392 (405)
Q Consensus 324 ~~R~Yi~~-ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~ 392 (405)
.++.+|.. |+.-+..+++++.++|-+ ..+ .|+...+..-+..+ .|...+|.++...
T Consensus 162 ~l~~~L~~i~~~egi~i~~~~l~~i~~------~~~-----gDlR~aln~Lq~~~--~~~~~i~~~~v~~ 218 (319)
T PLN03025 162 EILGRLMKVVEAEKVPYVPEGLEAIIF------TAD-----GDMRQALNNLQATH--SGFGFVNQENVFK 218 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH------HcC-----CCHHHHHHHHHHHH--hcCCCCCHHHHHH
Confidence 33334333 344577888888777632 222 34444444444333 3555787777654
No 98
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=29.82 E-value=3.1e+02 Score=25.83 Aligned_cols=65 Identities=12% Similarity=-0.035 Sum_probs=46.3
Q ss_pred HHHHHHHHHh-cc----CCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 323 EAWRWYLASV-RS----LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 323 ~~~R~Yi~~a-r~----~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
+.++.|+... +. ....+++++.+.| .+.+... +..+..+...+.+.|...|++.++.+++++++.
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i------~~~s~G~--p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAI------HRFSRGI--PRLINILCDRLLLSAFLEEKREIGGEEVREVIA 264 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHH------HHHcCCc--ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4566666543 11 1346888887777 3344432 466888888888889999999999999999874
No 99
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=29.73 E-value=2.7e+02 Score=21.75 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=42.3
Q ss_pred HHHHHHHHHh-ccCCC-CCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 323 EAWRWYLASV-RSLPH-SIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 323 ~~~R~Yi~~a-r~~~~-~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
..+|..++.. +..++ .+.+++.+.+.+-+ .+=+..+..-++-+|...|+++++.+|+..|++
T Consensus 6 ~ll~~~Vaqil~~~Gf~~~~~sale~ltdi~-----------~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~ 69 (77)
T smart00576 6 ALLRIAVAQILESAGFDSFQESALETLTDIL-----------QSYIQELGRTAHSYAELAGRTEPNLGDVVLALE 69 (77)
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 3456655554 44454 45666555554433 344667888889999999999999999998764
No 100
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.70 E-value=44 Score=28.37 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=23.4
Q ss_pred CCccEEEEEEcCCCCCcccCCEEEEEE
Q 015536 33 NSLPCLVKIYDCPESELKLNEVFEFVG 59 (405)
Q Consensus 33 ~~~~ciVkvYd~~~~~lklndvve~vG 59 (405)
+.+-.=|.+||..-.++|+||.+.|-|
T Consensus 18 GkK~iEvRl~d~krr~ik~GD~IiF~~ 44 (111)
T COG4043 18 GKKKIEVRLADPKRRQIKPGDKIIFNG 44 (111)
T ss_pred ccceEEEEecCHhhcCCCCCCEEEEcC
Confidence 666667999999778999999999996
No 101
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=27.85 E-value=7.7e+02 Score=26.34 Aligned_cols=203 Identities=16% Similarity=0.098 Sum_probs=97.7
Q ss_pred ceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEecCCceEEEeCCCCCc
Q 015536 168 KLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLET 247 (405)
Q Consensus 168 ~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa~gT~lviDEt~l~~ 247 (405)
..++-+.|.+| +-++.|+..+..-.-...--..|+++|=. +-.++ .-| +++.--.+||||-..-.
T Consensus 209 ~~Nli~lGp~G----TGKThla~~l~~~~a~~sG~f~T~a~Lf~-------~L~~~--~lg--~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 209 NYNLIELGPKG----TGKSYIYNNLSPYVILISGGTITVAKLFY-------NISTR--QIG--LVGRWDVVAFDEVATLK 273 (449)
T ss_pred CCcEEEECCCC----CCHHHHHHHHhHHHHHHcCCcCcHHHHHH-------HHHHH--HHh--hhccCCEEEEEcCCCCc
Confidence 46788899998 66777776554431111113345554411 10011 112 45556689999975322
Q ss_pred CcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCC-C--Cccc-CceeeeeccCCCCCCCCCChhhHH
Q 015536 248 GTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGK-S--NIVP-ADLVIPFQPSSAASFEVVPAETLE 323 (405)
Q Consensus 248 G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gK-S--~~lp-~d~~vpl~~~~~~~~~~~~~~~l~ 323 (405)
-.=.+.| ++.|+.-|+...-+= -...+..|.+++.+=--. + .+++ .|+--|+.+... +..-++
T Consensus 274 ~~~~~~~---v~imK~yMesg~fsR----G~~~~~a~as~vfvGNi~~~v~~~~~~~~Lf~~lP~~~~------DsAflD 340 (449)
T TIGR02688 274 FAKPKEL---IGILKNYMESGSFTR----GDETKSSDASFVFLGNVPLTSEHMVKNSDLFSPLPEFMR------DSAFLD 340 (449)
T ss_pred CCchHHH---HHHHHHHHHhCceec----cceeeeeeeEEEEEcccCCcchhhcCcccccccCChhhh------hhHHHH
Confidence 1101223 577788788774332 123344444444433200 0 0000 111111111000 111123
Q ss_pred HHHHHHHHhccCCCCCChhH--------HHHHHHHHHHHHhcC------------CCCCHHHHHHHHHHHHHH-HHHcCC
Q 015536 324 AWRWYLASVRSLPHSIESDM--------QKVVESDLVAARQAD------------RSLGGQDLSRLLTMGRLM-SASFGE 382 (405)
Q Consensus 324 ~~R~Yi~~ar~~~~~i~~e~--------~~~Iq~~fV~~Rq~~------------~~it~~~L~~~L~laRll-A~s~g~ 382 (405)
.+-.||-. |. =+.|.+|+ .+|+-+.+=++|+.+ ..++++|-...-++.-.+ =+.+-.
T Consensus 341 RiH~yiPG-We-ipk~~~e~~t~~yGl~~DylsE~l~~lR~~~~~~~~~~~~~l~~~~~~RD~~aV~kt~SgllKLL~P~ 418 (449)
T TIGR02688 341 RIHGYLPG-WE-IPKIRKEMFSNGYGFVVDYFAEALRELREREYADIVDRHFSLSPNLNTRDVIAVKKTFSGLMKILFPH 418 (449)
T ss_pred hhhccCCC-Cc-CccCCHHHcccCCcchHHHHHHHHHHHHhhHHHHhhhhheecCCCcchhhHHHHHHHHHHHHHHhCCC
Confidence 33333221 00 02333333 455666666667643 257888888777666555 455777
Q ss_pred CCCCHHHHHHHHHH--HHHH
Q 015536 383 TSLSLEHWQMVKEL--ERLR 400 (405)
Q Consensus 383 ~~lt~e~w~~a~~L--E~~R 400 (405)
..+|+|+.+++++. |-+|
T Consensus 419 ~~~~~ee~~~~l~~Ale~Rr 438 (449)
T TIGR02688 419 GTITKEEFTECLEPALEGRQ 438 (449)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 88999999888764 5444
No 102
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=27.07 E-value=9.1e+02 Score=26.91 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=32.7
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 333 RSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 333 r~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
+.....+++|+.++|-..|- + +-+.|...|.---..|+..+ ..+|.+..+.+++
T Consensus 460 ~~r~l~l~~eVi~yLa~r~~------r--nvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~ 513 (617)
T PRK14086 460 VQEQLNAPPEVLEFIASRIS------R--NIRELEGALIRVTAFASLNR-QPVDLGLTEIVLR 513 (617)
T ss_pred HhcCCCCCHHHHHHHHHhcc------C--CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHH
Confidence 34578999999999866552 1 35666665442222344444 4577777776665
No 103
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=26.89 E-value=72 Score=28.18 Aligned_cols=27 Identities=7% Similarity=0.285 Sum_probs=20.0
Q ss_pred ccEE-EEEEcCCCCCcccCCEEEEEEEe
Q 015536 35 LPCL-VKIYDCPESELKLNEVFEFVGVL 61 (405)
Q Consensus 35 ~~ci-VkvYd~~~~~lklndvve~vGIl 61 (405)
.+|| +-|+|+.-+.|+|||||.+.|=+
T Consensus 47 TgsI~isvW~e~~~~~~PGDIirLt~Gy 74 (134)
T KOG3416|consen 47 TGSINISVWDEEGCLIQPGDIIRLTGGY 74 (134)
T ss_pred cceEEEEEecCcCcccCCccEEEecccc
Confidence 3444 66777666789999999998744
No 104
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=26.72 E-value=5.2e+02 Score=30.60 Aligned_cols=74 Identities=11% Similarity=0.055 Sum_probs=40.7
Q ss_pred CCChhhH-HHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 015536 316 VVPAETL-EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVK 394 (405)
Q Consensus 316 ~~~~~~l-~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~ 394 (405)
+++.++| +.++.-+..+ ...+++++.++|.. +|.... =|.-+.|.+.|..+...+...|+.++..+|.
T Consensus 935 PYTaEQL~dILk~RAe~A---~gVLdDdAIELIAr-kVAq~S-------GDARKALDILRrAgEikegskVT~eHVrkAl 1003 (1164)
T PTZ00112 935 PYKGDEIEKIIKERLENC---KEIIDHTAIQLCAR-KVANVS-------GDIRKALQICRKAFENKRGQKIVPRDITEAT 1003 (1164)
T ss_pred CCCHHHHHHHHHHHHHhC---CCCCCHHHHHHHHH-hhhhcC-------CHHHHHHHHHHHHHhhcCCCccCHHHHHHHH
Confidence 3455554 3344444433 35689999988855 333211 1222334444444444566689999999987
Q ss_pred -HHHHHH
Q 015536 395 -ELERLR 400 (405)
Q Consensus 395 -~LE~~R 400 (405)
++|..|
T Consensus 1004 eeiE~sr 1010 (1164)
T PTZ00112 1004 NQLFDSP 1010 (1164)
T ss_pred HHHHhhh
Confidence 344433
No 105
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=26.55 E-value=2.1e+02 Score=21.79 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=41.9
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 337 HSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 337 ~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
+.|+.++..+++.-. ..-+..++..|..+|.-.++.+++.+|-+.|+++
T Consensus 26 ~ris~~a~~~L~~~~-----------E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~ 74 (75)
T PF00125_consen 26 YRISSEALVALQSVL-----------EYLLVEILEEAGNLARHAKRKTITPRDIQLAVRI 74 (75)
T ss_dssp SEECHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred cccccccchhhhhhh-----------hhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence 688888888776543 5778889999999999999999999999999876
No 106
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=26.27 E-value=1.1e+02 Score=33.43 Aligned_cols=111 Identities=17% Similarity=0.181 Sum_probs=67.7
Q ss_pred cceeeEeecCCCCccchhHHHHHHHHHhhcCceE--EEecc----hhhhhcC-CCCccccCCCC---cccccceEecCCc
Q 015536 167 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ--CIPLT----VNYLNTA-SLAPKKDYQTN---RLIPGVLQLADGS 236 (405)
Q Consensus 167 G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~--~l~lt----~~~Ln~~-~~~P~kD~~t~---~L~~G~LQLa~gT 236 (405)
-+.++.|.|-+| +-++-+.+.|.+..||.. ++.+. .++|=.. -|-=.+-.-|| .=..|.+++|+||
T Consensus 267 tdstVLi~GESG----TGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG 342 (560)
T COG3829 267 TDSTVLILGESG----TGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGG 342 (560)
T ss_pred CCCcEEEecCCC----ccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCC
Confidence 467899999998 789999999999999954 22221 1111111 11112222233 2378999999999
Q ss_pred eEEEeCC-CCCcCcccccchhHHHH-HHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 237 HLIIDET-QLETGTLNSTGVENARL-LKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 237 ~lviDEt-~l~~G~L~~~Gv~N~~a-L~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
.+.+||. .|.-- +|| |--+++.-+ |.==..+-..++|++++--+-
T Consensus 343 TLFLDEIgempl~---------LQaKLLRVLQEke--i~rvG~t~~~~vDVRIIAATN 389 (560)
T COG3829 343 TLFLDEIGEMPLP---------LQAKLLRVLQEKE--IERVGGTKPIPVDVRIIAATN 389 (560)
T ss_pred eEEehhhccCCHH---------HHHHHHHHHhhce--EEecCCCCceeeEEEEEeccC
Confidence 9999997 45422 111 222333222 222345677899999887664
No 107
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=26.11 E-value=87 Score=25.01 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=19.9
Q ss_pred HHHHHHHc-CCCCCCHHHHHHHHHHH
Q 015536 373 GRLMSASF-GETSLSLEHWQMVKELE 397 (405)
Q Consensus 373 aRllA~s~-g~~~lt~e~w~~a~~LE 397 (405)
+-|.|+++ |+...+.++|+.|++-=
T Consensus 19 aeLvALmwiGRGd~~~eew~~a~~~A 44 (75)
T PF12616_consen 19 AELVALMWIGRGDFEAEEWEEAVAEA 44 (75)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 45666666 99999999999998753
No 108
>PLN00158 histone H2B; Provisional
Probab=26.01 E-value=4.2e+02 Score=23.06 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhc-cC--CCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 322 LEAWRWYLASVR-SL--PHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 322 l~~~R~Yi~~ar-~~--~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
-+.|..||-.+- +. +..|+..... |-+.||+ |.|.++..-|--+|....+.++|-.+.+-|++|
T Consensus 26 ~esy~~YI~kVLKQVhPd~gIS~kaM~-ImnSfvn----------DiferIA~EAs~La~~nkr~TltsrEIqtAvrL 92 (116)
T PLN00158 26 TETYKIYIYKVLKQVHPDTGISSKAMS-IMNSFIN----------DIFEKIATEAGKLARYNKKPTVTSREIQTAVRL 92 (116)
T ss_pred cccHHHHHHHHHHHhCCCCCccHHHHH-HHHHHHH----------HHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHH
Confidence 467888987774 33 3456665443 4577876 889999999999999999999999999999887
No 109
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=25.80 E-value=5.2e+02 Score=29.75 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=42.6
Q ss_pred CCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhC--ceeeeecccceeeeeccceEEeecCCCCcccCceeeeeccCC
Q 015536 234 DGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQ--KVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSS 310 (405)
Q Consensus 234 ~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q--~v~YdF~y~~~~~~~dl~~lvLS~gKS~~lp~d~~vpl~~~~ 310 (405)
...++||||- .|+.+. .++|-..|+.- .+.|-|--. -+-.|+..|+|+ | ..|.|++-
T Consensus 119 r~KVIIIDEah~LT~~A--------~NALLKtLEEPP~~v~FILaTt---d~~KIp~TIrSR-------C-q~f~Fk~L- 178 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHA--------FNAMLKTLEEPPPHVKFILATT---DPQKIPVTVLSR-------C-LQFNLKQM- 178 (830)
T ss_pred CceEEEEeChhhCCHHH--------HHHHHHHHHhcCCCeEEEEEEC---Chhhccchhhhh-------e-EEEecCCc-
Confidence 4568999996 565431 45666667652 333443221 122355556666 3 23333222
Q ss_pred CCCCCCCChhhHHHHHHHHHH-hccCCCCCChhHHHHH
Q 015536 311 AASFEVVPAETLEAWRWYLAS-VRSLPHSIESDMQKVV 347 (405)
Q Consensus 311 ~~~~~~~~~~~l~~~R~Yi~~-ar~~~~~i~~e~~~~I 347 (405)
+.+ .+..+|.. +..-+..++++..+.|
T Consensus 179 -------s~e---eIv~~L~~Il~~EgI~id~eAL~lI 206 (830)
T PRK07003 179 -------PAG---HIVSHLERILGEERIAFEPQALRLL 206 (830)
T ss_pred -------CHH---HHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 222 33333332 2234567788877776
No 110
>KOG3982 consensus Runt and related transcription factors [Transcription]
Probab=25.67 E-value=92 Score=32.26 Aligned_cols=55 Identities=27% Similarity=0.379 Sum_probs=41.2
Q ss_pred ecCCceEEEeCCCCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEee-cCCCCcccCceeeee
Q 015536 232 LADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILS-EGKSNIVPADLVIPF 306 (405)
Q Consensus 232 La~gT~lviDEt~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS-~gKS~~lp~d~~vpl 306 (405)
++|||.+.|=. |. +|+-+.-++.-..+|..|.-.|. |++++--| +||| |.+.|.+
T Consensus 147 VpDgT~Vti~a-----GN-DEnyc~ElRN~tA~mknQVAkFN----------DLRFVGRSGRGKs----FtLTIti 202 (475)
T KOG3982|consen 147 VPDGTLVTIMA-----GN-DENYCAELRNCTAVMKNQVAKFN----------DLRFVGRSGRGKS----FTLTITI 202 (475)
T ss_pred cCCCcEEEEEe-----cC-CcchhHHhhhhHHHHHhhhhhhc----------cceeecccCCCcc----eEEEEEE
Confidence 56799888843 21 34455556666778999999998 99999999 7899 7766655
No 111
>PTZ00463 histone H2B; Provisional
Probab=25.36 E-value=4.3e+02 Score=22.98 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=50.7
Q ss_pred HHHHHHHHHHh-ccC--CCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 322 LEAWRWYLASV-RSL--PHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 322 l~~~R~Yi~~a-r~~--~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
-+.|..||-.+ ++. +..|+..+.. |-+.||+ |.|+++..-|--+|....+.++|-.+.+-|++|
T Consensus 27 ~esy~~YI~KVLKqVhPd~gIS~kaM~-ImnSfvn----------DifErIA~EAs~La~~nkr~TltsrEIQtAvrL 93 (117)
T PTZ00463 27 YDSYGLYIFKVLKQVHPDTGISRKSMN-IMNSFLV----------DTFEKIATEASRLCKYTRRDTLSSREIQTAIRL 93 (117)
T ss_pred cchHHHHHHHHHHhhCCCCCccHHHHH-HHHHHHH----------HHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhh
Confidence 46788898876 343 3457665543 5677876 899999999999999999999999999999887
No 112
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=22.90 E-value=3.6e+02 Score=30.50 Aligned_cols=60 Identities=18% Similarity=0.116 Sum_probs=35.4
Q ss_pred HHHHHHHHHh-ccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 015536 323 EAWRWYLASV-RSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVK 394 (405)
Q Consensus 323 ~~~R~Yi~~a-r~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~ 394 (405)
+.++.||... +..+..+++++.+.|- |.++. +.++...+|-- + .++|...++.++...++
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia------~~A~G--slRdAlnLLDq--a--ia~g~g~It~e~V~~lL 241 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLG------RAAAG--SMRDALSLLDQ--A--IALGSGKVAENDVRQMI 241 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHH------HHhCC--CHHHHHHHHHH--H--HHhcCCCcCHHHHHHHH
Confidence 4555566543 3346788998888773 33333 35566555542 2 23466678888766654
No 113
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=22.27 E-value=3.8e+02 Score=20.80 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=34.3
Q ss_pred CCCChhHHHHHH---HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 337 HSIESDMQKVVE---SDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 337 ~~i~~e~~~~Iq---~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
..+++++.+.++ ++||. ..+.-|..+|.-+|+.+++.+|.+.+++-
T Consensus 18 ~~~~~da~~~l~~~~e~fv~--------------~v~~~a~~lAkHr~~~tv~~~Di~l~l~r 66 (72)
T cd07981 18 EQLDPDVEELLLEIADDFVD--------------DVVEDACRLAKHRKSDTLEVKDVQLHLER 66 (72)
T ss_pred CCcCHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 467887777654 44443 45666778999999999999999888764
No 114
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=21.70 E-value=3.3e+02 Score=23.99 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHH
Q 015536 128 RESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQ 193 (405)
Q Consensus 128 R~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~ 193 (405)
.+.|-..|..-|+|..+|.+-++=++-+-..+.. +.-.+-|-+.|.+| +-++-+.+.|+
T Consensus 16 ~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~~---p~KpLVlSfHG~tG----tGKn~v~~liA 74 (127)
T PF06309_consen 16 ITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANPN---PRKPLVLSFHGWTG----TGKNFVSRLIA 74 (127)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC---CCCCEEEEeecCCC----CcHHHHHHHHH
Confidence 4457778888899999999999888877765543 23347788999998 44444444443
Done!