Query 015536
Match_columns 405
No_of_seqs 125 out of 204
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 14:19:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015536.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015536hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f8t_A Predicted ATPase involv 99.9 4.2E-26 1.4E-30 235.3 23.6 304 29-397 127-483 (506)
2 3f9v_A Minichromosome maintena 99.9 7.7E-23 2.6E-27 217.8 11.8 341 29-399 197-589 (595)
3 3nbx_X ATPase RAVA; AAA+ ATPas 98.5 1.8E-05 6.1E-10 82.6 23.7 229 124-391 9-280 (500)
4 2r44_A Uncharacterized protein 98.5 2E-05 6.9E-10 76.4 21.9 229 129-396 19-296 (331)
5 1g8p_A Magnesium-chelatase 38 98.4 7.8E-06 2.7E-10 79.2 15.7 231 140-396 27-321 (350)
6 3k1j_A LON protease, ATP-depen 98.2 1.4E-05 4.9E-10 84.7 15.0 158 224-396 191-374 (604)
7 3syl_A Protein CBBX; photosynt 95.8 0.38 1.3E-05 45.2 16.7 230 129-391 23-280 (309)
8 1ofh_A ATP-dependent HSL prote 95.6 0.34 1.2E-05 45.2 15.4 245 129-395 7-297 (310)
9 4fcw_A Chaperone protein CLPB; 94.6 0.17 5.9E-06 47.6 10.3 129 129-271 9-149 (311)
10 3pfi_A Holliday junction ATP-d 94.5 0.57 1.9E-05 44.7 13.7 184 170-395 57-252 (338)
11 3uk6_A RUVB-like 2; hexameric 93.3 2 6.7E-05 41.3 15.1 66 324-396 263-329 (368)
12 2vl6_A SSO MCM N-TER, minichro 93.0 0.076 2.6E-06 50.4 4.5 39 29-67 203-243 (268)
13 3h4m_A Proteasome-activating n 92.3 1.2 4.2E-05 41.2 11.8 37 360-396 221-257 (285)
14 1ltl_A DNA replication initiat 92.3 0.098 3.3E-06 50.1 4.1 37 29-65 190-228 (279)
15 1um8_A ATP-dependent CLP prote 91.3 0.42 1.4E-05 46.7 7.6 134 130-271 14-181 (376)
16 1r6b_X CLPA protein; AAA+, N-t 91.0 1.6 5.5E-05 46.8 12.5 126 131-271 452-587 (758)
17 3pxi_A Negative regulator of g 90.9 1.1 3.9E-05 48.1 11.2 205 132-371 486-718 (758)
18 1g41_A Heat shock protein HSLU 90.2 3.6 0.00012 42.0 13.5 132 234-371 250-401 (444)
19 2qz4_A Paraplegin; AAA+, SPG7, 90.1 1.3 4.5E-05 40.2 9.4 37 360-396 212-248 (262)
20 1hqc_A RUVB; extended AAA-ATPa 89.7 4.7 0.00016 37.7 13.2 184 169-395 39-236 (324)
21 1lv7_A FTSH; alpha/beta domain 88.1 8.5 0.00029 34.9 13.4 36 360-395 215-250 (257)
22 3vfd_A Spastin; ATPase, microt 86.1 17 0.00056 35.5 15.1 55 334-395 297-363 (389)
23 3co5_A Putative two-component 85.1 0.28 9.7E-06 41.3 1.4 75 168-268 27-102 (143)
24 3pvs_A Replication-associated 84.4 1.1 3.8E-05 45.5 5.7 180 170-395 52-242 (447)
25 2bjv_A PSP operon transcriptio 83.6 1.7 5.9E-05 39.9 6.2 110 169-292 30-149 (265)
26 3eie_A Vacuolar protein sortin 79.4 25 0.00084 33.2 12.9 69 168-246 51-123 (322)
27 1ny5_A Transcriptional regulat 79.0 2.6 9E-05 41.6 6.0 195 167-391 159-381 (387)
28 3hu3_A Transitional endoplasmi 78.7 14 0.00047 37.8 11.5 187 169-395 239-457 (489)
29 3b9p_A CG5977-PA, isoform A; A 78.0 20 0.00068 33.0 11.6 52 336-394 206-269 (297)
30 3n70_A Transport activator; si 76.7 1.7 5.9E-05 36.4 3.4 75 167-265 23-100 (145)
31 1ojl_A Transcriptional regulat 75.8 5.2 0.00018 38.1 6.9 112 167-292 24-145 (304)
32 2c9o_A RUVB-like 1; hexameric 75.5 9.4 0.00032 38.3 9.1 67 323-396 369-436 (456)
33 3bos_A Putative DNA replicatio 74.6 42 0.0014 29.1 15.6 61 323-395 181-241 (242)
34 3d8b_A Fidgetin-like protein 1 74.1 28 0.00097 33.5 11.9 55 334-395 266-332 (357)
35 4b4t_J 26S protease regulatory 73.2 43 0.0015 33.6 13.1 187 171-396 185-388 (405)
36 2qp9_X Vacuolar protein sortin 72.7 35 0.0012 32.9 12.2 68 169-246 85-156 (355)
37 2z4s_A Chromosomal replication 72.3 9.3 0.00032 38.4 8.1 52 335-395 279-330 (440)
38 2v1u_A Cell division control p 71.3 16 0.00056 34.4 9.3 68 323-396 208-275 (387)
39 1qvr_A CLPB protein; coiled co 71.1 21 0.00071 38.9 11.1 90 170-271 590-690 (854)
40 3dzd_A Transcriptional regulat 69.6 6.3 0.00022 38.7 6.0 181 167-373 151-357 (368)
41 1sxj_D Activator 1 41 kDa subu 68.8 30 0.001 32.3 10.5 63 324-394 196-260 (353)
42 2zan_A Vacuolar protein sortin 68.6 42 0.0014 33.5 12.0 69 169-246 168-240 (444)
43 3hws_A ATP-dependent CLP prote 65.8 2.3 7.8E-05 41.2 1.9 134 130-268 8-157 (363)
44 3m6a_A ATP-dependent protease 63.1 22 0.00076 36.7 8.9 200 170-394 110-338 (543)
45 2ce7_A Cell division protein F 63.0 41 0.0014 34.3 10.7 36 360-395 219-254 (476)
46 4b4t_M 26S protease regulatory 59.3 25 0.00086 35.5 8.3 188 170-395 217-420 (434)
47 4b4t_I 26S protease regulatory 56.5 34 0.0012 34.7 8.6 185 171-395 219-421 (437)
48 2dhr_A FTSH; AAA+ protein, hex 55.5 92 0.0032 31.9 11.9 35 361-395 235-269 (499)
49 1sxj_A Activator 1 95 kDa subu 54.8 56 0.0019 33.1 10.2 178 169-395 78-272 (516)
50 4b4t_L 26S protease subunit RP 52.7 59 0.002 32.8 9.7 188 170-395 217-420 (437)
51 1fnn_A CDC6P, cell division co 51.6 92 0.0032 29.2 10.6 58 336-395 212-272 (389)
52 2qby_A CDC6 homolog 1, cell di 51.5 61 0.0021 30.3 9.2 55 336-395 216-270 (386)
53 4b4t_H 26S protease regulatory 51.2 49 0.0017 33.8 8.9 187 170-395 245-448 (467)
54 1in4_A RUVB, holliday junction 49.6 66 0.0023 30.5 9.2 66 323-396 183-249 (334)
55 1taf_B TFIID TBP associated fa 46.8 69 0.0024 24.1 6.9 54 332-396 16-70 (70)
56 3kw6_A 26S protease regulatory 45.2 30 0.001 25.7 4.8 38 360-397 36-73 (78)
57 1wwi_A Hypothetical protein TT 40.2 1.2E+02 0.0041 26.2 8.2 62 320-396 80-143 (148)
58 3vlf_B 26S protease regulatory 39.1 50 0.0017 25.3 5.3 36 360-395 34-69 (88)
59 2krk_A 26S protease regulatory 33.2 59 0.002 24.9 4.8 36 360-395 44-79 (86)
60 2dzn_B 26S protease regulatory 32.3 63 0.0022 24.2 4.8 36 360-395 31-66 (82)
61 1xwi_A SKD1 protein; VPS4B, AA 31.2 3.3E+02 0.011 25.4 18.3 68 169-245 46-117 (322)
62 2chg_A Replication factor C sm 29.5 2.4E+02 0.0083 23.3 13.9 48 335-395 177-224 (226)
63 1iqp_A RFCS; clamp loader, ext 29.0 3.2E+02 0.011 24.6 10.7 27 233-267 109-136 (327)
64 3aji_B S6C, proteasome (prosom 27.9 59 0.002 24.2 3.9 36 360-395 34-69 (83)
65 1h3o_B Transcription initiatio 27.4 2.1E+02 0.007 21.8 7.0 46 336-395 21-69 (76)
66 2hue_C Histone H4; mini beta s 26.5 1E+02 0.0035 23.6 5.1 52 333-395 21-73 (84)
67 1r6b_X CLPA protein; AAA+, N-t 25.2 2.2E+02 0.0075 30.0 9.2 25 168-196 207-231 (758)
68 1ji8_A Dissimilatory siroheme- 25.2 66 0.0023 26.5 3.9 26 371-396 33-59 (111)
69 1tzy_D Histone H4-VI; histone- 24.6 1.5E+02 0.005 23.6 5.9 59 323-395 33-92 (103)
70 1r4v_A Hypothetical protein AQ 24.2 80 0.0027 27.9 4.4 28 369-396 139-166 (171)
71 2yfw_B Histone H4, H4; cell cy 24.2 1.5E+02 0.0052 23.6 5.9 59 323-395 33-92 (103)
72 3or1_C Sulfite reductase GAMA; 23.3 53 0.0018 26.7 3.0 26 371-396 28-53 (105)
73 1id3_B Histone H4; nucleosome 23.3 1.6E+02 0.0056 23.5 5.9 48 337-395 44-91 (102)
74 2klz_A Ataxin-3; UIM, ubiquiti 23.1 21 0.00071 25.2 0.4 24 373-396 11-36 (52)
75 2kjg_A Archaeal protein SSO690 22.1 1.4E+02 0.0048 23.6 5.0 55 348-403 6-60 (99)
76 3b0c_W CENP-W, centromere prot 21.8 2.5E+02 0.0085 20.9 7.4 49 336-395 20-68 (76)
77 1njg_A DNA polymerase III subu 21.5 3.5E+02 0.012 22.5 11.2 48 335-394 201-248 (250)
78 2chq_A Replication factor C sm 20.7 1.5E+02 0.0052 26.7 6.1 22 170-195 40-61 (319)
No 1
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.94 E-value=4.2e-26 Score=235.27 Aligned_cols=304 Identities=15% Similarity=0.130 Sum_probs=226.0
Q ss_pred ccCCCCccEEEEEE--cCCCC------CcccCCEEEEEEEeecCcccccccCCCCCCccccchhhcccCCCCCcceeeEE
Q 015536 29 NAERNSLPCLVKIY--DCPES------ELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCL 100 (405)
Q Consensus 29 ~~p~~~~~ciVkvY--d~~~~------~lklndvve~vGIl~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlHvi 100 (405)
.+|.++.|.-+.|+ |+..+ .+||||.|+++||+... ++-..|+.
T Consensus 127 ~~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~GI~~~~----------------------------~l~a~~i~ 178 (506)
T 3f8t_A 127 EVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRSA----------------------------TLDALEVH 178 (506)
T ss_dssp EEEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEETT----------------------------EEEEEEEE
T ss_pred cCCCCCCCceEEEEecccccCcccccccccCCCEEEEEEEEEEe----------------------------EEEEEEEE
Confidence 45779999988887 66677 89999999999998543 23334443
Q ss_pred EEEEecCCCccCCCCCCCCCchhHH--------HHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeecceeeE
Q 015536 101 IHRKLDVNDFLHSSPMMEPKPQLVK--------ETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLN 172 (405)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~iR~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLn 172 (405)
. -.. +... .......+ ++.+.|.+.|++ +.|+..++..|++.|++++.. .+|++++.
T Consensus 179 ~---~~~--~~~~----~~t~ed~~~i~~l~~~~~~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k-----~rgdihVL 243 (506)
T 3f8t_A 179 K---KDP--IPEV----HPDPAELEEFRELADKDPLTTFARAIAP-LPGAEEVGKMLALQLFSCVGK-----NSERLHVL 243 (506)
T ss_dssp E---ECS--SCCC----CCCHHHHHHHHHHHHSCHHHHHHHHHCC-STTCHHHHHHHHHHHTTCCSS-----GGGCCCEE
T ss_pred E---cCc--cccC----CCCHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHcCCccc-----cCCceeEE
Confidence 2 111 1000 11111111 346788999999 999999999999999999755 78999999
Q ss_pred eecCCCCccchhHHHHHHHH-HhhcCceEEEecc---hhhhhcCCCCccccCCCC-cccccceEecCCceEEEeCC-CCC
Q 015536 173 LTCLSKESVSVFGNQVRLSV-QNLLPFTQCIPLT---VNYLNTASLAPKKDYQTN-RLIPGVLQLADGSHLIIDET-QLE 246 (405)
Q Consensus 173 l~~~p~~~~~~~~~~L~~~l-~~l~P~~~~l~lt---~~~Ln~~~~~P~kD~~t~-~L~~G~LQLa~gT~lviDEt-~l~ 246 (405)
|.|+|| + |++|.+++ ..++|+..|++.. ..+|+.. .+|. +| .+++|.+.||+||+|+|||. +|.
T Consensus 244 L~G~PG----t-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s----~r~~-tG~~~~~G~l~LAdgGvl~lDEIn~~~ 313 (506)
T 3f8t_A 244 LAGYPV----V-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV----LKED-RGWALRAGAAVLADGGILAVDHLEGAP 313 (506)
T ss_dssp EESCHH----H-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE----EEES-SSEEEEECHHHHTTTSEEEEECCTTCC
T ss_pred EECCCC----h-HHHHHHHHHHHhCCCeEEecCCCCCccCceEE----EEcC-CCcccCCCeeEEcCCCeeehHhhhhCC
Confidence 999998 8 99999999 9999999999763 3446543 3444 44 78999999999999999996 555
Q ss_pred cCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCCC----------cc------cCceeeeeccCC
Q 015536 247 TGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSN----------IV------PADLVIPFQPSS 310 (405)
Q Consensus 247 ~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~----------~l------p~d~~vpl~~~~ 310 (405)
.. -..+|+++|++|+|... .. .+|++..++--..-... -+ -||+.+.+.+.+
T Consensus 314 ~~--------~qsaLlEaMEe~~VtI~--G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~p 381 (506)
T 3f8t_A 314 EP--------HRWALMEAMDKGTVTVD--GI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDP 381 (506)
T ss_dssp HH--------HHHHHHHHHHHSEEEET--TE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--
T ss_pred HH--------HHHHHHHHHhCCcEEEC--CE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCC
Confidence 44 58999999999999877 32 56665555443321100 01 178888776554
Q ss_pred CCCCC--CC-ChhhHHHHHHHHHHhc--cCCCCCChhHHHHHHHHHHHHHhcC----------CCCCHHHHHHHHHHHHH
Q 015536 311 AASFE--VV-PAETLEAWRWYLASVR--SLPHSIESDMQKVVESDLVAARQAD----------RSLGGQDLSRLLTMGRL 375 (405)
Q Consensus 311 ~~~~~--~~-~~~~l~~~R~Yi~~ar--~~~~~i~~e~~~~Iq~~fV~~Rq~~----------~~it~~~L~~~L~laRl 375 (405)
+.+.+ .. .....+.+|+|+.+|| ...+.+++++.++|.+.|+++|+.. -.+|++.+..|+++|++
T Consensus 382 d~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A 461 (506)
T 3f8t_A 382 RPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKA 461 (506)
T ss_dssp ------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHH
T ss_pred ChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHH
Confidence 43221 11 1234589999999999 4589999999999999999999741 15899999999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHH
Q 015536 376 MSASFGETSLSLEHWQMVKELE 397 (405)
Q Consensus 376 lA~s~g~~~lt~e~w~~a~~LE 397 (405)
+|+.+|++.|+.||.+.|++|=
T Consensus 462 ~A~L~gR~~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 462 HARMRLSDDVEPEDVDIAAELV 483 (506)
T ss_dssp HHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHcCcCCCCHHHHHHHHHHH
Confidence 9999999999999999999983
No 2
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.88 E-value=7.7e-23 Score=217.76 Aligned_cols=341 Identities=16% Similarity=0.171 Sum_probs=239.3
Q ss_pred ccCCCCccEEEEEE--cCCCCCcccCCEEEEEEEeecCcccccccCCCCCCccccchhhcccCCCCCcceeeEEEEEEec
Q 015536 29 NAERNSLPCLVKIY--DCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLD 106 (405)
Q Consensus 29 ~~p~~~~~ciVkvY--d~~~~~lklndvve~vGIl~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlHvi~~~~~~ 106 (405)
++|.|.+|.-+.|+ |+..+.+||||.|.|+||+...|..+..... ...+ ..++-..|+....+..
T Consensus 197 ~~~~g~~pr~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~~~~~~~~--~~~~-----------~~~i~a~~i~~~~~~~ 263 (595)
T 3f9v_A 197 EVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKRGS--RAVF-----------DIYMKVSSIEVSQKVL 263 (595)
T ss_dssp TSCTTSCCCEEEEEEEGGGTTCSCSSCEEEEEEECCCCCSSTTSCTT--CCCC-----------CCCCEEEEEEECCCCC
T ss_pred cCCCCCCCceEEEEEecccccccccCCEEEEEEEEEecccccccCCC--cceE-----------EEEEEEEeeccccccc
Confidence 45778888876655 7778899999999999999987754321100 0001 1245555554333221
Q ss_pred CCCccCCCCCCCC---CchhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhccccccc-CceeecceeeEeecCCCCccc
Q 015536 107 VNDFLHSSPMMEP---KPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARI-DNVAVGKLSLNLTCLSKESVS 182 (405)
Q Consensus 107 ~~~~~~~~~~~~~---~~~~~~~iR~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~-d~~~~G~~sLnl~~~p~~~~~ 182 (405)
.. ..-++.... ......++.+.|...|++.+.|...+++.+++.|++++.... +....|+.++.|.|+||
T Consensus 264 ~~--~~~t~~~~~~i~~~~~~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppG---- 337 (595)
T 3f9v_A 264 DE--VIISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPG---- 337 (595)
T ss_dssp CC--CCCTTSTHHHHHTTSSTTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSC----
T ss_pred cc--CCCCHHHHHHHHHHhhCcHHHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCc----
Confidence 10 000000000 000012335678888999999999999999999999975532 34567999999999998
Q ss_pred hhHHHHHHHHHhhcCceEEEe---cchhhhhcCCCCccccCCCC--cccccceEecCCceEEEeCC-CCCcCcccccchh
Q 015536 183 VFGNQVRLSVQNLLPFTQCIP---LTVNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDET-QLETGTLNSTGVE 256 (405)
Q Consensus 183 ~~~~~L~~~l~~l~P~~~~l~---lt~~~Ln~~~~~P~kD~~t~--~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~ 256 (405)
+.+++|.++++..+|+..|.. .+..+|.... .++..++ .+++|.+.+|+||+|+|||. +|...
T Consensus 338 tGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~---~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~-------- 406 (595)
T 3f9v_A 338 TAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAV---VREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE-------- 406 (595)
T ss_dssp CTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEEC---SSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH--------
T ss_pred hHHHHHHHHHHHhCCCceecCCCcccccccccee---eeccccccccccCCeeEecCCCcEEeehhhhCCHh--------
Confidence 889999999999999998874 2334443322 2332233 68999999999999999996 56554
Q ss_pred HHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCC-------------Cc-----ccCceeeeeccCCCCC-----
Q 015536 257 NARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS-------------NI-----VPADLVIPFQPSSAAS----- 313 (405)
Q Consensus 257 N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS-------------~~-----lp~d~~vpl~~~~~~~----- 313 (405)
-..+|.++|++|++..........++.++.++.-+.-.. .+ --||+.+.+.+.++.+
T Consensus 407 ~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~ 486 (595)
T 3f9v_A 407 DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELA 486 (595)
T ss_dssp HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHH
T ss_pred HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHH
Confidence 378999999999998776666777777666666553211 01 1277776665443211
Q ss_pred -----CCC---C-ChhhHHHHHHHHHHhccC-CCCCChhHHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHHH
Q 015536 314 -----FEV---V-PAETLEAWRWYLASVRSL-PHSIESDMQKVVESDLVAARQADR-------SLGGQDLSRLLTMGRLM 376 (405)
Q Consensus 314 -----~~~---~-~~~~l~~~R~Yi~~ar~~-~~~i~~e~~~~Iq~~fV~~Rq~~~-------~it~~~L~~~L~laRll 376 (405)
... . ..-..+.+|+|+.+||.. .+.+++++.++|.+.|+++|+... .+|.+.|..++++|+++
T Consensus 487 ~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~ 566 (595)
T 3f9v_A 487 NYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAY 566 (595)
T ss_dssp HHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHH
Confidence 000 0 111235789999999975 889999999999999999998653 58999999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHH
Q 015536 377 SASFGETSLSLEHWQMVKELERL 399 (405)
Q Consensus 377 A~s~g~~~lt~e~w~~a~~LE~~ 399 (405)
|+.+|++.++.+|.++|++|=+.
T Consensus 567 A~l~~~~~V~~~dv~~Ai~l~~~ 589 (595)
T 3f9v_A 567 AKMALKAEVTREDAERAINIMRL 589 (595)
T ss_dssp HHTTSSCCSSHHHHHHHHHHHHH
T ss_pred HHHhCcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988443
No 3
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.50 E-value=1.8e-05 Score=82.55 Aligned_cols=229 Identities=11% Similarity=0.043 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEE--
Q 015536 124 VKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQC-- 201 (405)
Q Consensus 124 ~~~iR~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~-- 201 (405)
..+..+.+...|++.+.|...+.+.+++.+.++ -++.|.|.|| +.|+.|.+.|...+++..+
T Consensus 9 ~~~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~------------~~VLL~GpPG----tGKT~LAraLa~~l~~~~~f~ 72 (500)
T 3nbx_X 9 LAERISRLSSSLEKGLYERSHAIRLCLLAALSG------------ESVFLLGPPG----IAKSLIARRLKFAFQNARAFE 72 (500)
T ss_dssp HHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHT------------CEEEEECCSS----SSHHHHHHHGGGGBSSCCEEE
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC------------CeeEeecCch----HHHHHHHHHHHHHHhhhhHHH
Confidence 445578889999999999999999999988875 2799999998 7899999999998876322
Q ss_pred -Eec---chhhhhcCCCCccccCCCCcccccceE------ecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCce
Q 015536 202 -IPL---TVNYLNTASLAPKKDYQTNRLIPGVLQ------LADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKV 270 (405)
Q Consensus 202 -l~l---t~~~Ln~~~~~P~kD~~t~~L~~G~LQ------La~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v 270 (405)
+.. |.+.|-... +.. .....|.+. ++.+++|+|||. .+. -+-..+|.++|+.+.+
T Consensus 73 ~~~~~~~t~~dL~G~~-----~~~-~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~--------~~~q~~LL~~lee~~v 138 (500)
T 3nbx_X 73 YLMTRFSTPEEVFGPL-----SIQ-ALKDEGRYERLTSGYLPEAEIVFLDEIWKAG--------PAILNTLLTAINERQF 138 (500)
T ss_dssp EECCTTCCHHHHHCCB-----C-----------CBCCTTSGGGCSEEEEESGGGCC--------HHHHHHHHHHHHSSEE
T ss_pred HHHHhcCCHHHhcCcc-----cHH-HHhhchhHHhhhccCCCcceeeeHHhHhhhc--------HHHHHHHHHHHHHHhc
Confidence 211 223322210 000 011233332 223457999997 333 3347899999999988
Q ss_pred eeeecccceeeeeccceEEeecCCC--------C-cccCceeeeeccCCCCC---------C----C------CCChhhH
Q 015536 271 EYNFEYYKMEMIADVQMLILSEGKS--------N-IVPADLVIPFQPSSAAS---------F----E------VVPAETL 322 (405)
Q Consensus 271 ~YdF~y~~~~~~~dl~~lvLS~gKS--------~-~lp~d~~vpl~~~~~~~---------~----~------~~~~~~l 322 (405)
..+ ....+.+.+++|++...- . +--|++.+.+.+-.... . . ..+.+++
T Consensus 139 ~i~----G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l 214 (500)
T 3nbx_X 139 RNG----AHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEY 214 (500)
T ss_dssp ECS----SSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHH
T ss_pred cCC----CCcCCcchhhhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHH
Confidence 763 223445556656655321 0 11134445443222110 0 0 0123344
Q ss_pred HHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 015536 323 EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQAD--RSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQ 391 (405)
Q Consensus 323 ~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~--~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~ 391 (405)
..+|.+ ++ ...+++++.++|.+-.-..|... ..++.+.+..++++|+++|...|++.++.+|..
T Consensus 215 ~~~~~~---~~--~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 215 ERWQKE---IG--EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHH---HT--TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHhc---CC--cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 444443 33 36789999998877665545433 358999999999999999999999999999876
No 4
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.48 E-value=2e-05 Score=76.39 Aligned_cols=229 Identities=11% Similarity=0.074 Sum_probs=141.2
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceE-EEecc--
Q 015536 129 ESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ-CIPLT-- 205 (405)
Q Consensus 129 ~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~-~l~lt-- 205 (405)
+++...+...+.|...+.+.++..+.++ -++.|.|.|| +-|+.|.+.+...++... ++..+
T Consensus 19 ~~~~~~~~~~i~g~~~~~~~l~~~l~~~------------~~vll~G~pG----tGKT~la~~la~~~~~~~~~i~~~~~ 82 (331)
T 2r44_A 19 KEVIDEVGKVVVGQKYMINRLLIGICTG------------GHILLEGVPG----LAKTLSVNTLAKTMDLDFHRIQFTPD 82 (331)
T ss_dssp HHHHHHHTTTCCSCHHHHHHHHHHHHHT------------CCEEEESCCC----HHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred HHHHHHhccceeCcHHHHHHHHHHHHcC------------CeEEEECCCC----CcHHHHHHHHHHHhCCCeEEEecCCC
Confidence 3444555556679999999999888763 2799999998 789999999988776543 23332
Q ss_pred --hhhhhcCCCCccccCCCC--cccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeeccccee
Q 015536 206 --VNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKME 280 (405)
Q Consensus 206 --~~~Ln~~~~~P~kD~~t~--~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~ 280 (405)
.+.+..... .+...+ .+..|.+ .+++++|||. .+... -..+|.++|+.+.+..+ .....
T Consensus 83 ~~~~~l~g~~~---~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~--------~~~~Ll~~l~~~~~~~~--g~~~~ 146 (331)
T 2r44_A 83 LLPSDLIGTMI---YNQHKGNFEVKKGPV---FSNFILADEVNRSPAK--------VQSALLECMQEKQVTIG--DTTYP 146 (331)
T ss_dssp CCHHHHHEEEE---EETTTTEEEEEECTT---CSSEEEEETGGGSCHH--------HHHHHHHHHHHSEEEET--TEEEE
T ss_pred CChhhcCCcee---ecCCCCceEeccCcc---cccEEEEEccccCCHH--------HHHHHHHHHhcCceeeC--CEEEE
Confidence 122211110 011111 2334444 2589999996 34332 37789999999877652 33333
Q ss_pred eeeccceEEeecCCC-------Ccc-----cCceeeeeccCCCCC----------------CC-CCChhhHHHHHHHHHH
Q 015536 281 MIADVQMLILSEGKS-------NIV-----PADLVIPFQPSSAAS----------------FE-VVPAETLEAWRWYLAS 331 (405)
Q Consensus 281 ~~~dl~~lvLS~gKS-------~~l-----p~d~~vpl~~~~~~~----------------~~-~~~~~~l~~~R~Yi~~ 331 (405)
.+. +++++..... .+- -|++.+.+.+-.... .. .....++..+|.+.
T Consensus 147 ~~~--~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 222 (331)
T 2r44_A 147 LDN--PFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEI-- 222 (331)
T ss_dssp CCS--SCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHH--
T ss_pred CCC--CEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHh--
Confidence 343 3333332110 011 144444443211000 00 01223333344332
Q ss_pred hccCCCCCChhHHHHHHHHHHHHHhcCC------------CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 332 VRSLPHSIESDMQKVVESDLVAARQADR------------SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 332 ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~------------~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
.+..+++++.++|.+-+.+.|.... .++.+.+..++++|+++|...|++.++.+|.+.|+..
T Consensus 223 ---~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 223 ---NKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp ---HTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred ---ccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 2567999999999988888887542 4689999999999999999999999999999998865
No 5
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.36 E-value=7.8e-06 Score=79.21 Aligned_cols=231 Identities=15% Similarity=0.092 Sum_probs=140.6
Q ss_pred cCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEec---chhhhhcC----
Q 015536 140 GNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPL---TVNYLNTA---- 212 (405)
Q Consensus 140 ~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~l---t~~~Ln~~---- 212 (405)
.|..-+.+.++..+++. ..-++.|.|.|| +-|+.+.+.+...+++..+... .....+..
T Consensus 27 ~G~~~~~~~l~~~~~~~----------~~~~vLl~G~~G----tGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (350)
T 1g8p_A 27 VGQEDMKLALLLTAVDP----------GIGGVLVFGDRG----TGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWA 92 (350)
T ss_dssp CSCHHHHHHHHHHHHCG----------GGCCEEEECCGG----GCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTC
T ss_pred cChHHHHHHHHHHhhCC----------CCceEEEECCCC----ccHHHHHHHHHHhCccccccccccccccccccccchh
Confidence 34544555555544432 112599999998 6788889999888886443211 10000000
Q ss_pred ------------CCC--cc--------------c--cCCCCcccccceEecCCceEEEeCC-CCCcCcccccchhHHHHH
Q 015536 213 ------------SLA--PK--------------K--DYQTNRLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLL 261 (405)
Q Consensus 213 ------------~~~--P~--------------k--D~~t~~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL 261 (405)
.|. |. + ......+..|.+..+++++++|||- .|... -..+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--------~~~~L 164 (350)
T 1g8p_A 93 TVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--------IVDLL 164 (350)
T ss_dssp CCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH--------HHHHH
T ss_pred hhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH--------HHHHH
Confidence 000 00 0 0011245678888899999999996 44432 36789
Q ss_pred HHHHHhCceeeeecccceeeeeccceEEeecCCC-Cccc-----CceeeeeccCCCCCCC-C-C--------C-------
Q 015536 262 KNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS-NIVP-----ADLVIPFQPSSAASFE-V-V--------P------- 318 (405)
Q Consensus 262 ~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS-~~lp-----~d~~vpl~~~~~~~~~-~-~--------~------- 318 (405)
..+|+.+.+.+.-.......+.++.++..+.-.. .+.+ +++.+.+.+-...+.. . . .
T Consensus 165 l~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 244 (350)
T 1g8p_A 165 LDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEE 244 (350)
T ss_dssp HHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccc
Confidence 9999999877776666666666665555444211 1211 4555555433221100 0 0 0
Q ss_pred -hhhHHHHHHHHHHhcc--CCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 319 -AETLEAWRWYLASVRS--LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 319 -~~~l~~~R~Yi~~ar~--~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
..+...++.+|..+|. ....+++++.++|.+.+-..|. -+.+.+..+++.|+++|...|+..++.++...|+.
T Consensus 245 ~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~----~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 245 WRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGS----DGLRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSS----CSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCC----CCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 0111234667766654 3568999999998776533221 16799999999999999999999999999999887
Q ss_pred H
Q 015536 396 L 396 (405)
Q Consensus 396 L 396 (405)
+
T Consensus 321 ~ 321 (350)
T 1g8p_A 321 M 321 (350)
T ss_dssp H
T ss_pred H
Confidence 6
No 6
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.21 E-value=1.4e-05 Score=84.67 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=105.9
Q ss_pred cccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecc--------cceeeeeccceEEeecCC
Q 015536 224 RLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEY--------YKMEMIADVQMLILSEGK 294 (405)
Q Consensus 224 ~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y--------~~~~~~~dl~~lvLS~gK 294 (405)
++..|.+..++|++|+|||- .|... -..+|..+|+++++...-.. .+..+++|+.++..+...
T Consensus 191 ~i~~g~~~~a~~gvL~LDEi~~l~~~--------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~ 262 (604)
T 3k1j_A 191 RVEPGMIHRAHKGVLFIDEIATLSLK--------MQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD 262 (604)
T ss_dssp GEECCHHHHTTTSEEEETTGGGSCHH--------HHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH
T ss_pred cccCceeeecCCCEEEEechhhCCHH--------HHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH
Confidence 46889999999999999996 45433 36799999999998765211 144567788776666532
Q ss_pred --CCccc-----Cc---eeeeeccCCCCCCCCCChhhHHHHHHHHHH-hcc--CCCCCChhHHHHHHHHHHHHHhcC-C-
Q 015536 295 --SNIVP-----AD---LVIPFQPSSAASFEVVPAETLEAWRWYLAS-VRS--LPHSIESDMQKVVESDLVAARQAD-R- 359 (405)
Q Consensus 295 --S~~lp-----~d---~~vpl~~~~~~~~~~~~~~~l~~~R~Yi~~-ar~--~~~~i~~e~~~~Iq~~fV~~Rq~~-~- 359 (405)
..+.| |+ +.+++++.. +-.++.+..+-.|+.. ++. ....+++++.+.|.+.+. |... +
T Consensus 263 ~~~~l~~~l~~R~~v~~i~i~l~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~--r~~g~r~ 335 (604)
T 3k1j_A 263 TVDKMHPALRSRIRGYGYEVYMRTTM-----PDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQ--KRAGRKG 335 (604)
T ss_dssp HHHHSCHHHHHHHHHHSEEEECCSEE-----ECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHH--HTTCSTT
T ss_pred HHhhcCHHHHHHhhccceEeeccccc-----cCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHh--hhhcccc
Confidence 11211 22 333432221 1122333333344433 221 346899999999888774 3332 2
Q ss_pred --CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 360 --SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 360 --~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
+++.+++..+++.|+.+|...|+..++.+|.++|.+.
T Consensus 336 ~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 336 HLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 3689999999999999999999999999999999864
No 7
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.77 E-value=0.38 Score=45.16 Aligned_cols=230 Identities=18% Similarity=0.169 Sum_probs=120.7
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHH----hcccccccCc-eeecceeeEeecCCCCccchhHHHHHHHHHhhcC------
Q 015536 129 ESLLRHLTSILGNDGIAAHLMLLHL----LSRVHARIDN-VAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLP------ 197 (405)
Q Consensus 129 ~~li~~La~~l~GD~laAeyLLL~L----~s~V~~r~d~-~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P------ 197 (405)
+++...|.+.+.|...+.+.|.-.+ +.+.+.+.+- ...+..++.|.|.|| +-|+.+.+.+...+.
T Consensus 23 ~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~G----tGKT~la~~la~~l~~~~~~~ 98 (309)
T 3syl_A 23 KEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPG----TGKTTVALKMAGLLHRLGYVR 98 (309)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTT----SSHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCC----CCHHHHHHHHHHHHHhcCCcC
Confidence 4566777766778888888765221 1221111111 123556899999998 556666665555442
Q ss_pred ceEEEecchhhhhcCCCCccccCCCCcccccceEecCCceEEEeCC-CCCcCc-ccccchhHHHHHHHHHHhCceeeeec
Q 015536 198 FTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDET-QLETGT-LNSTGVENARLLKNLMEFQKVEYNFE 275 (405)
Q Consensus 198 ~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa~gT~lviDEt-~l~~G~-L~~~Gv~N~~aL~~li~~Q~v~YdF~ 275 (405)
...++.++.+.+....+. .+..-..+.+..+.+++++|||- .|.... =+..+.+-+..|..+|+...
T Consensus 99 ~~~~~~~~~~~l~~~~~g-----~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~------ 167 (309)
T 3syl_A 99 KGHLVSVTRDDLVGQYIG-----HTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR------ 167 (309)
T ss_dssp SCCEEEECGGGTCCSSTT-----CHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT------
T ss_pred CCcEEEEcHHHhhhhccc-----ccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC------
Confidence 223333444444322111 01112356666778999999996 453211 01223344677778887642
Q ss_pred ccceeeeeccceEEeecCCC--Ccc---c-----CceeeeeccCCCCCCCCCChhh-HHHHHHHHHHhccCCCCCChhHH
Q 015536 276 YYKMEMIADVQMLILSEGKS--NIV---P-----ADLVIPFQPSSAASFEVVPAET-LEAWRWYLASVRSLPHSIESDMQ 344 (405)
Q Consensus 276 y~~~~~~~dl~~lvLS~gKS--~~l---p-----~d~~vpl~~~~~~~~~~~~~~~-l~~~R~Yi~~ar~~~~~i~~e~~ 344 (405)
.++.++..+.... .++ | ++..+.+.+ ++.++ ...++.|+.. ....+++++.
T Consensus 168 -------~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~--------~~~~~~~~il~~~l~~---~~~~~~~~~~ 229 (309)
T 3syl_A 168 -------DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPD--------YSDEELFEIAGHMLDD---QNYQMTPEAE 229 (309)
T ss_dssp -------TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECC--------CCHHHHHHHHHHHHHH---TTCEECHHHH
T ss_pred -------CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCC--------cCHHHHHHHHHHHHHH---cCCCCCHHHH
Confidence 2333333332110 000 1 334444422 23333 3455555544 4678999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc----CCCCCCHHHHH
Q 015536 345 KVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASF----GETSLSLEHWQ 391 (405)
Q Consensus 345 ~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~----g~~~lt~e~w~ 391 (405)
+.+.+.+-..+.....-+.+++..++.-+.+.+..+ +...++.+++.
T Consensus 230 ~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 230 TALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 999887766555444455888888887666544333 33455555543
No 8
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.58 E-value=0.34 Score=45.23 Aligned_cols=245 Identities=14% Similarity=0.154 Sum_probs=126.7
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhcccccccC---ce--eecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEe
Q 015536 129 ESLLRHLTSILGNDGIAAHLMLLHLLSRVHARID---NV--AVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIP 203 (405)
Q Consensus 129 ~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~d---~~--~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~ 203 (405)
+++...|.+.+.|...+.+.+...+.... .+.. +. ....-++.|.|.|| +-++.+.+.+...+... ++.
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~vll~G~~G----tGKT~la~~la~~l~~~-~~~ 80 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRW-RRMQLQEPLRHEVTPKNILMIGPTG----VGKTEIARRLAKLANAP-FIK 80 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHH-HTTSSCHHHHHHCCCCCEEEECCTT----SSHHHHHHHHHHHHTCC-EEE
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHH-hhhhhcccccccCCCceEEEECCCC----CCHHHHHHHHHHHhCCC-EEE
Confidence 46778888888899999999887765521 1111 11 11235799999998 66777887777766542 333
Q ss_pred cchhhhhcCCCCccccCCCCc----c---cccceEec-CCceEEEeCC-CCCcCcccccchhH-----HHHHHHHHHhCc
Q 015536 204 LTVNYLNTASLAPKKDYQTNR----L---IPGVLQLA-DGSHLIIDET-QLETGTLNSTGVEN-----ARLLKNLMEFQK 269 (405)
Q Consensus 204 lt~~~Ln~~~~~P~kD~~t~~----L---~~G~LQLa-~gT~lviDEt-~l~~G~L~~~Gv~N-----~~aL~~li~~Q~ 269 (405)
++...+....+... +.+. + ..|.+..+ .+++++|||- +|....- ..|-.. ..+|..+++...
T Consensus 81 i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~-~~~~~~~~~~~~~~Ll~~le~~~ 156 (310)
T 1ofh_A 81 VEATKFTEVGYVGK---EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE-YSGADVSREGVQRDLLPLVEGST 156 (310)
T ss_dssp EEGGGGSSCCSGGG---STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSS-CCSSHHHHHHHHHHHHHHHHCCE
T ss_pred EcchhcccCCccCc---cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccc-ccccchhHHHHHHHHHHHhcCCe
Confidence 44444433222211 0110 0 12344333 4789999995 5654321 111110 456778888665
Q ss_pred eeeeecccceeeeeccceEEeec-----CCCCccc-----CceeeeeccCCCCCCCCCChhhH-HHHH--------HHHH
Q 015536 270 VEYNFEYYKMEMIADVQMLILSE-----GKSNIVP-----ADLVIPFQPSSAASFEVVPAETL-EAWR--------WYLA 330 (405)
Q Consensus 270 v~YdF~y~~~~~~~dl~~lvLS~-----gKS~~lp-----~d~~vpl~~~~~~~~~~~~~~~l-~~~R--------~Yi~ 330 (405)
+... +. ..+.+--++|.+. ....+.| ++..+.+.+- +.+++ +.++ .|..
T Consensus 157 ~~~~--~~--~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~--------~~~~~~~il~~~~~~~~~~~~~ 224 (310)
T 1ofh_A 157 VSTK--HG--MVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTAL--------SAADFERILTEPHASLTEQYKA 224 (310)
T ss_dssp EEET--TE--EEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCC--------CHHHHHHHHHSSTTCHHHHHHH
T ss_pred Eecc--cc--cccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCc--------CHHHHHHHHHhhHHHHHHHHHH
Confidence 4432 11 2233322333332 1111111 3333444322 22221 1222 2222
Q ss_pred Hhcc--CCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-----HcCCC-CCCHHHHHHHHH
Q 015536 331 SVRS--LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSA-----SFGET-SLSLEHWQMVKE 395 (405)
Q Consensus 331 ~ar~--~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~-----s~g~~-~lt~e~w~~a~~ 395 (405)
.++. ....+++++.++|.+..-..++....-+.+.+..++.-+-..+. ..|+. .+|.++.+.++.
T Consensus 225 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~ 297 (310)
T 1ofh_A 225 LMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALG 297 (310)
T ss_dssp HHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTC
T ss_pred HHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHH
Confidence 2322 23579999999988776554444334457888777764322111 11222 499999888764
No 9
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.64 E-value=0.17 Score=47.56 Aligned_cols=129 Identities=12% Similarity=0.043 Sum_probs=75.9
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhccccccc-CceeecceeeEeecCCCCccchhHHHHHHHHHhhcCce--EEEecc
Q 015536 129 ESLLRHLTSILGNDGIAAHLMLLHLLSRVHARI-DNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLT 205 (405)
Q Consensus 129 ~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~-d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~--~~l~lt 205 (405)
..+-..|...+.|...+.+.+...+-.....-. ... ..-++.|.|.|| +-++.+.+.+...+++. .++.+.
T Consensus 9 ~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~--~~~~~ll~G~~G----tGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 9 LRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNR--PIGSFLFLGPTG----VGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp HTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTS--CSEEEEEESCSS----SSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCC--CceEEEEECCCC----cCHHHHHHHHHHHHcCCCcceEEee
Confidence 456777788888898888888776655421111 111 123789999998 66888888887776542 122222
Q ss_pred hhhhhcCC-----C-C-cc-ccCCCCcccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCcee
Q 015536 206 VNYLNTAS-----L-A-PK-KDYQTNRLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVE 271 (405)
Q Consensus 206 ~~~Ln~~~-----~-~-P~-kD~~t~~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~ 271 (405)
...+.... + . |. ..+.....-.+.+.-+++++++|||- +|.. .-..+|..+|+...+.
T Consensus 83 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~--------~~~~~Ll~~le~~~~~ 149 (311)
T 4fcw_A 83 MTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP--------DVFNILLQMLDDGRLT 149 (311)
T ss_dssp GGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH--------HHHHHHHHHHHHSEEE
T ss_pred cccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH--------HHHHHHHHHHhcCEEE
Confidence 22222111 0 0 00 01111123345566677899999995 4543 3477899999988765
No 10
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.48 E-value=0.57 Score=44.71 Aligned_cols=184 Identities=13% Similarity=0.068 Sum_probs=102.3
Q ss_pred eeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEecCCceEEEeCC-CCCcC
Q 015536 170 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDET-QLETG 248 (405)
Q Consensus 170 sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa~gT~lviDEt-~l~~G 248 (405)
++.|.|.|| +-|+.+.+.+..-..... +.++...+. . .+.+....-.++++++++|||- .|...
T Consensus 57 ~vll~G~~G----tGKT~la~~ia~~~~~~~-~~~~~~~~~------~----~~~~~~~~~~~~~~~vl~lDEi~~l~~~ 121 (338)
T 3pfi_A 57 HILFSGPAG----LGKTTLANIISYEMSANI-KTTAAPMIE------K----SGDLAAILTNLSEGDILFIDEIHRLSPA 121 (338)
T ss_dssp CEEEECSTT----SSHHHHHHHHHHHTTCCE-EEEEGGGCC------S----HHHHHHHHHTCCTTCEEEEETGGGCCHH
T ss_pred eEEEECcCC----CCHHHHHHHHHHHhCCCe-EEecchhcc------c----hhHHHHHHHhccCCCEEEEechhhcCHH
Confidence 589999998 678888888877654432 222222110 0 1123333334678999999996 45432
Q ss_pred cccccchhHHHHHHHHHHhCceeeeecc--cceeeeeccc--eEEeecCCCCccc------CceeeeeccCCCCCCCCCC
Q 015536 249 TLNSTGVENARLLKNLMEFQKVEYNFEY--YKMEMIADVQ--MLILSEGKSNIVP------ADLVIPFQPSSAASFEVVP 318 (405)
Q Consensus 249 ~L~~~Gv~N~~aL~~li~~Q~v~YdF~y--~~~~~~~dl~--~lvLS~gKS~~lp------~d~~vpl~~~~~~~~~~~~ 318 (405)
-..+|..+++...+..-... ..-.+.++.| ++|.+..+...+. ++..+.+.+ ++
T Consensus 122 --------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~--------~~ 185 (338)
T 3pfi_A 122 --------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEF--------YK 185 (338)
T ss_dssp --------HHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCC--------CC
T ss_pred --------HHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCC--------cC
Confidence 36778888888775432111 1112233333 2333332221111 233333322 22
Q ss_pred hhhH-HHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 319 AETL-EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 319 ~~~l-~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
.+++ ..++.++ +.....+++++.+.|.+.+ . =+.+.+..++.-+..+|...+...++.++...++.
T Consensus 186 ~~e~~~il~~~~---~~~~~~~~~~~~~~l~~~~------~--G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~ 252 (338)
T 3pfi_A 186 DSELALILQKAA---LKLNKTCEEKAALEIAKRS------R--STPRIALRLLKRVRDFADVNDEEIITEKRANEALN 252 (338)
T ss_dssp HHHHHHHHHHHH---HHTTCEECHHHHHHHHHTT------T--TCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHH------C--cCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHH
Confidence 2222 3333333 2345678888877774422 2 25688888888888888888888999999887765
No 11
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.27 E-value=2 Score=41.27 Aligned_cols=66 Identities=14% Similarity=0.060 Sum_probs=48.8
Q ss_pred HHHHHHH-HhccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 324 AWRWYLA-SVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 324 ~~R~Yi~-~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
.++.+|. .++.....+++++.++|.+.. .. =+.+++..++.-|...|...|...+|.+++++|+++
T Consensus 263 e~~~il~~~~~~~~~~~~~~~l~~l~~~~-----~~--G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 263 DTKQILRIRCEEEDVEMSEDAYTVLTRIG-----LE--TSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHHHHHHTTCCBCHHHHHHHHHHH-----HH--SCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHh-----cC--CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3444443 223356789999888774422 10 247999999999999999999999999999999886
No 12
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=93.05 E-value=0.076 Score=50.45 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=32.5
Q ss_pred ccCCCCccEEEEEE--cCCCCCcccCCEEEEEEEeecCccc
Q 015536 29 NAERNSLPCLVKIY--DCPESELKLNEVFEFVGVLTLDSDV 67 (405)
Q Consensus 29 ~~p~~~~~ciVkvY--d~~~~~lklndvve~vGIl~~~p~~ 67 (405)
.+|.|++|.-+.|+ |+..+.+||||.|+|+||+...|..
T Consensus 203 ~vp~G~~Prsi~v~l~~dLvd~~~PGDrV~vtGI~~~~~~~ 243 (268)
T 2vl6_A 203 EVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDS 243 (268)
T ss_dssp GSCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEEEEECSS
T ss_pred CCCCCCCCcEEEEEEccCccCcccCCCEEEEEEEEEEeecc
Confidence 46889999876555 7888999999999999999877643
No 13
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.33 E-value=1.2 Score=41.17 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 360 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 360 ~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
..+.+++..+++-|...|...|...++.++++.|++-
T Consensus 221 g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 221 GCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHH
Confidence 4688999999999999999999999999999998763
No 14
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=92.27 E-value=0.098 Score=50.09 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=31.1
Q ss_pred ccCCCCccEEEEEE--cCCCCCcccCCEEEEEEEeecCc
Q 015536 29 NAERNSLPCLVKIY--DCPESELKLNEVFEFVGVLTLDS 65 (405)
Q Consensus 29 ~~p~~~~~ciVkvY--d~~~~~lklndvve~vGIl~~~p 65 (405)
.+|.|++|.-+.|+ |+..+.+||||.|+|+||+...+
T Consensus 190 ~vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vtGI~~~~~ 228 (279)
T 1ltl_A 190 NLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVR 228 (279)
T ss_dssp TCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEEEE
T ss_pred cCCCCCCCeEEEEEEcccccCccCCCCEEEEEEEEEEee
Confidence 46889999876655 78888999999999999998765
No 15
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.32 E-value=0.42 Score=46.73 Aligned_cols=134 Identities=14% Similarity=0.081 Sum_probs=75.7
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhccccccc--------------------CceeecceeeEeecCCCCccchhHHHHH
Q 015536 130 SLLRHLTSILGNDGIAAHLMLLHLLSRVHARI--------------------DNVAVGKLSLNLTCLSKESVSVFGNQVR 189 (405)
Q Consensus 130 ~li~~La~~l~GD~laAeyLLL~L~s~V~~r~--------------------d~~~~G~~sLnl~~~p~~~~~~~~~~L~ 189 (405)
.+.+.|.+.+.|...|++.|...+........ ++...+.-++.|.|.|| +-++.+.
T Consensus 14 ~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~G----tGKT~la 89 (376)
T 1um8_A 14 ELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTG----SGKTLMA 89 (376)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTT----SSHHHHH
T ss_pred HHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCC----CCHHHHH
Confidence 46777888888999999999877753221111 11234567899999998 6788888
Q ss_pred HHHHhhcCceEEEecchhhhhcCCCCccccCCCCcc-------cccceEecCCceEEEeCC-CCCcC------cccccch
Q 015536 190 LSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRL-------IPGVLQLADGSHLIIDET-QLETG------TLNSTGV 255 (405)
Q Consensus 190 ~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L-------~~G~LQLa~gT~lviDEt-~l~~G------~L~~~Gv 255 (405)
+.+...+... ++.+....+....+.- +..... ..|.+..+.+++++|||. +|... ..+..|-
T Consensus 90 ~~la~~l~~~-~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~ 165 (376)
T 1um8_A 90 QTLAKHLDIP-IAISDATSLTEAGYVG---EDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGE 165 (376)
T ss_dssp HHHHHHTTCC-EEEEEGGGCC-----------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CH
T ss_pred HHHHHHhCCC-EEEecchhhhhcCcCC---ccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchH
Confidence 8888777432 2223333332111100 000111 124455678999999996 55543 1122222
Q ss_pred hHHHHHHHHHHhCcee
Q 015536 256 ENARLLKNLMEFQKVE 271 (405)
Q Consensus 256 ~N~~aL~~li~~Q~v~ 271 (405)
.-..+|..+|+.+.+.
T Consensus 166 ~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 166 GVQQALLKIVEGSLVN 181 (376)
T ss_dssp HHHHHHHHHHHCCEEC
T ss_pred HHHHHHHHHhhcccee
Confidence 2378899999977553
No 16
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.01 E-value=1.6 Score=46.79 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=71.7
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhcccc-cccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhh
Q 015536 131 LLRHLTSILGNDGIAAHLMLLHLLSRVH-ARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYL 209 (405)
Q Consensus 131 li~~La~~l~GD~laAeyLLL~L~s~V~-~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~L 209 (405)
+...|...+.|...+.+.+.-.+-.... ......+. -++.|.|.|| +-++.+.+.+...+.. .++.++...+
T Consensus 452 l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~--~~~ll~G~~G----tGKT~la~~la~~l~~-~~~~i~~s~~ 524 (758)
T 1r6b_X 452 LGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPV--GSFLFAGPTG----VGKTEVTVQLSKALGI-ELLRFDMSEY 524 (758)
T ss_dssp HHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCS--EEEEEECSTT----SSHHHHHHHHHHHHTC-EEEEEEGGGC
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCc--eEEEEECCCC----CcHHHHHHHHHHHhcC-CEEEEechhh
Confidence 4445555667777777665443321100 00111122 2789999998 6788888888877753 3444443333
Q ss_pred hcC----CCC-ccccC---CCCcccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCcee
Q 015536 210 NTA----SLA-PKKDY---QTNRLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVE 271 (405)
Q Consensus 210 n~~----~~~-P~kD~---~t~~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~ 271 (405)
... .+. ....| +.+..-.|.+..+++++++|||- ++... -...|..+|+...+.
T Consensus 525 ~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~--------~~~~Ll~~le~~~~~ 587 (758)
T 1r6b_X 525 MERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD--------VFNILLQVMDNGTLT 587 (758)
T ss_dssp SSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHH--------HHHHHHHHHHHSEEE
T ss_pred cchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHH--------HHHHHHHHhcCcEEE
Confidence 221 110 00011 11223356666788999999996 45433 377889999988765
No 17
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.93 E-value=1.1 Score=48.12 Aligned_cols=205 Identities=12% Similarity=0.091 Sum_probs=107.9
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhccccc-ccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCc--eEEEecchhh
Q 015536 132 LRHLTSILGNDGIAAHLMLLHLLSRVHA-RIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPF--TQCIPLTVNY 208 (405)
Q Consensus 132 i~~La~~l~GD~laAeyLLL~L~s~V~~-r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~--~~~l~lt~~~ 208 (405)
-..|...+.|...+.+.+.-.+...... .....++| ++.|.|.|| +-+..+.+.+...+.+ ..++.+....
T Consensus 486 ~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~--~~Ll~Gp~G----tGKT~lA~ala~~l~~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 486 ENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIG--SFIFLGPTG----VGKTELARALAESIFGDEESMIRIDMSE 559 (758)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSE--EEEEESCTT----SSHHHHHHHHHHHHHSCTTCEEEEEGGG
T ss_pred HHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCce--EEEEECCCC----CCHHHHHHHHHHHhcCCCcceEEEechh
Confidence 3445555667777776665544322111 11122222 789999998 6788888888887632 2233333333
Q ss_pred hhcCCCCccccCCCCcccccceEecCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccce
Q 015536 209 LNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQM 287 (405)
Q Consensus 209 Ln~~~~~P~kD~~t~~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~ 287 (405)
+...... .+..-.+.+.-.++++++|||. ++... -...|-.+|+..++.-. ....+ ...|+.+
T Consensus 560 ~~~~~~~------~~~~l~~~~~~~~~~vl~lDEi~~~~~~--------~~~~Ll~~le~g~~~~~-~g~~~-~~~~~~i 623 (758)
T 3pxi_A 560 YMEKHST------SGGQLTEKVRRKPYSVVLLDAIEKAHPD--------VFNILLQVLEDGRLTDS-KGRTV-DFRNTIL 623 (758)
T ss_dssp GCSSCCC------C---CHHHHHHCSSSEEEEECGGGSCHH--------HHHHHHHHHHHSBCC------CC-BCTTCEE
T ss_pred ccccccc------ccchhhHHHHhCCCeEEEEeCccccCHH--------HHHHHHHHhccCeEEcC-CCCEe-ccCCeEE
Confidence 3221111 1222345556677899999996 45432 37788999998876532 22222 2245555
Q ss_pred EEeecCCCC------------ccc-----CceeeeeccCCCCCCCCCChhhH-HHHHHHHHHhc------cCCCCCChhH
Q 015536 288 LILSEGKSN------------IVP-----ADLVIPFQPSSAASFEVVPAETL-EAWRWYLASVR------SLPHSIESDM 343 (405)
Q Consensus 288 lvLS~gKS~------------~lp-----~d~~vpl~~~~~~~~~~~~~~~l-~~~R~Yi~~ar------~~~~~i~~e~ 343 (405)
+..|...+. |.| +|.++++.+- +++++ ..++.++.... .....+++++
T Consensus 624 I~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l--------~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a 695 (758)
T 3pxi_A 624 IMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSL--------EKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAA 695 (758)
T ss_dssp EEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC----------CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHH
T ss_pred EEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCC--------CHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHH
Confidence 555542110 111 4444444332 33333 45555555432 1245788988
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015536 344 QKVVESDLVAARQADRSLGGQDLSRLLT 371 (405)
Q Consensus 344 ~~~Iq~~fV~~Rq~~~~it~~~L~~~L~ 371 (405)
.++|.+ +.-+...+.+.|.+++.
T Consensus 696 ~~~l~~-----~~~~~~~~~R~L~~~i~ 718 (758)
T 3pxi_A 696 KAKVAE-----EGVDLEYGARPLRRAIQ 718 (758)
T ss_dssp HHHHHG-----GGCCTTTTTTTHHHHHH
T ss_pred HHHHHH-----hCCCCCCCChHHHHHHH
Confidence 877732 22344567777777765
No 18
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.15 E-value=3.6 Score=41.97 Aligned_cols=132 Identities=18% Similarity=0.224 Sum_probs=73.0
Q ss_pred CCceEEEeCC-CCCcC------cccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCCCcccCceeeee
Q 015536 234 DGSHLIIDET-QLETG------TLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPF 306 (405)
Q Consensus 234 ~gT~lviDEt-~l~~G------~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~~lp~d~~vpl 306 (405)
++|.+.+||. |+..+ .....|| .+||-.+|+--.+.- .| ..++++-=+.|.+..-..--|.|++=++
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egv--q~aLL~~le~~~~~~--~~--~~~d~~~ilfI~~gaf~~~~~~dlipel 323 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGV--QRDLLPLVEGSTVST--KH--GMVKTDHILFIASGAFQVARPSDLIPEL 323 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHH--HHHHHHHHHCCEEEE--TT--EEEECTTCEEEEEECCSSCCGGGSCHHH
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHH--HHHHHHHhccccccc--cc--ceecCCcEEEEeccccccCChhhcchHH
Confidence 6889999994 77643 2333344 578999999776665 33 4555554344444311100124432111
Q ss_pred ccCCCC--CCCCCChhhH---------HHHHHHHHHhcc--CCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015536 307 QPSSAA--SFEVVPAETL---------EAWRWYLASVRS--LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLT 371 (405)
Q Consensus 307 ~~~~~~--~~~~~~~~~l---------~~~R~Yi~~ar~--~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~ 371 (405)
..-..- .....+++++ ..+++|...... ....+++++.+.|.+...+.....+.+.++-|++.|-
T Consensus 324 ~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie 401 (444)
T 1g41_A 324 QGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVME 401 (444)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHH
T ss_pred hcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHH
Confidence 111000 1123344332 135566655443 4567999999998877655434445678888888765
No 19
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.13 E-value=1.3 Score=40.16 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 360 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 360 ~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
..+..++..++.-|.+.|...|...++.++++.|++-
T Consensus 212 g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~ 248 (262)
T 2qz4_A 212 GFSGADIANICNEAALHAAREGHTSVHTLNFEYAVER 248 (262)
T ss_dssp TCCHHHHHHHHHHHHTC--------CCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4678999999999999999999999999999998763
No 20
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.67 E-value=4.7 Score=37.74 Aligned_cols=184 Identities=14% Similarity=0.049 Sum_probs=94.8
Q ss_pred eeeEeecCCCCccchhHHHHHHHHHhhcCc-eEEEecchhhhhcCCCCccccCCCCcccccce-EecCCceEEEeCC-CC
Q 015536 169 LSLNLTCLSKESVSVFGNQVRLSVQNLLPF-TQCIPLTVNYLNTASLAPKKDYQTNRLIPGVL-QLADGSHLIIDET-QL 245 (405)
Q Consensus 169 ~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~-~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~L-QLa~gT~lviDEt-~l 245 (405)
-++.|.|.|| +-|+.+.+.+..-... ..++. ...+ .... .+..-.- .+++++.++|||- .|
T Consensus 39 ~~vll~G~~G----tGKT~la~~i~~~~~~~~~~~~--~~~~-----~~~~-----~l~~~l~~~~~~~~~l~lDEi~~l 102 (324)
T 1hqc_A 39 EHLLLFGPPG----LGKTTLAHVIAHELGVNLRVTS--GPAI-----EKPG-----DLAAILANSLEEGDILFIDEIHRL 102 (324)
T ss_dssp CCCEEECCTT----CCCHHHHHHHHHHHTCCEEEEC--TTTC-----CSHH-----HHHHHHTTTCCTTCEEEETTTTSC
T ss_pred CcEEEECCCC----CCHHHHHHHHHHHhCCCEEEEe--cccc-----CChH-----HHHHHHHHhccCCCEEEEECCccc
Confidence 4789999998 5566777666554432 22221 1111 1111 1111111 2578999999996 44
Q ss_pred CcCcccccchhHHHHHHHHHHhCceeeeecc----cceeee-eccceEEeecCCCCccc-----CceeeeeccCCCCCCC
Q 015536 246 ETGTLNSTGVENARLLKNLMEFQKVEYNFEY----YKMEMI-ADVQMLILSEGKSNIVP-----ADLVIPFQPSSAASFE 315 (405)
Q Consensus 246 ~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y----~~~~~~-~dl~~lvLS~gKS~~lp-----~d~~vpl~~~~~~~~~ 315 (405)
... ....|..+++...+..-... ..+..+ .++.++..+.....+.+ ++..+.+.
T Consensus 103 ~~~--------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~-------- 166 (324)
T 1hqc_A 103 SRQ--------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLE-------- 166 (324)
T ss_dssp CHH--------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECC--------
T ss_pred ccc--------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecC--------
Confidence 422 36778888888765432111 111111 12333333332211111 11122221
Q ss_pred CCChhhHHHHHHHHHHh-ccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 015536 316 VVPAETLEAWRWYLASV-RSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVK 394 (405)
Q Consensus 316 ~~~~~~l~~~R~Yi~~a-r~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~ 394 (405)
.++. +.++.++... +..+..+++++.+.|.+. ... +.+.+..++..+..+|...+...++.+++..+.
T Consensus 167 ~~~~---~e~~~~l~~~~~~~~~~~~~~~~~~l~~~------~~G--~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~ 235 (324)
T 1hqc_A 167 YYTP---EELAQGVMRDARLLGVRITEEAALEIGRR------SRG--TMRVAKRLFRRVRDFAQVAGEEVITRERALEAL 235 (324)
T ss_dssp CCCH---HHHHHHHHHHHHTTTCCCCHHHHHHHHHH------SCS--CHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHH
T ss_pred CCCH---HHHHHHHHHHHHhcCCCCCHHHHHHHHHH------ccC--CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 2223 3334444332 234567888887776432 222 467788777777777777777788888887765
Q ss_pred H
Q 015536 395 E 395 (405)
Q Consensus 395 ~ 395 (405)
.
T Consensus 236 ~ 236 (324)
T 1hqc_A 236 A 236 (324)
T ss_dssp H
T ss_pred H
Confidence 4
No 21
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=88.10 E-value=8.5 Score=34.90 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 360 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 360 ~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
..+.++|..++.-|.+.|...|...++.++++.|++
T Consensus 215 G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 215 GFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 468999999999999999999999999999999876
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=86.11 E-value=17 Score=35.49 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=35.7
Q ss_pred cCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc------------CCCCCCHHHHHHHHH
Q 015536 334 SLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASF------------GETSLSLEHWQMVKE 395 (405)
Q Consensus 334 ~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~------------g~~~lt~e~w~~a~~ 395 (405)
.....++++..+.|.. .. ...+..++..+++-|-+.+... +...++.+|+..+++
T Consensus 297 ~~~~~l~~~~~~~la~------~~-~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~ 363 (389)
T 3vfd_A 297 KQGSPLTQKELAQLAR------MT-DGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLK 363 (389)
T ss_dssp TSCCCSCHHHHHHHHH------HT-TTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHH------Hc-CCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHH
Confidence 3456677765544421 12 2367888888888777777655 345788899887764
No 23
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.05 E-value=0.28 Score=41.34 Aligned_cols=75 Identities=12% Similarity=-0.036 Sum_probs=50.7
Q ss_pred ceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEecCCceEEEeCC-CCC
Q 015536 168 KLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDET-QLE 246 (405)
Q Consensus 168 ~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa~gT~lviDEt-~l~ 246 (405)
..++.|.|.|| +-|+.+.+.+....+ .++.++...+.. .+..|.+..++++.++|||- .|.
T Consensus 27 ~~~vll~G~~G----tGKt~lA~~i~~~~~--~~~~~~~~~~~~------------~~~~~~~~~a~~~~l~lDei~~l~ 88 (143)
T 3co5_A 27 TSPVFLTGEAG----SPFETVARYFHKNGT--PWVSPARVEYLI------------DMPMELLQKAEGGVLYVGDIAQYS 88 (143)
T ss_dssp SSCEEEEEETT----CCHHHHHGGGCCTTS--CEECCSSTTHHH------------HCHHHHHHHTTTSEEEEEECTTCC
T ss_pred CCcEEEECCCC----ccHHHHHHHHHHhCC--CeEEechhhCCh------------HhhhhHHHhCCCCeEEEeChHHCC
Confidence 45799999998 678888888877766 333333333321 12578888899999999996 454
Q ss_pred cCcccccchhHHHHHHHHHHhC
Q 015536 247 TGTLNSTGVENARLLKNLMEFQ 268 (405)
Q Consensus 247 ~G~L~~~Gv~N~~aL~~li~~Q 268 (405)
.. -...|..+++..
T Consensus 89 ~~--------~q~~Ll~~l~~~ 102 (143)
T 3co5_A 89 RN--------IQTGITFIIGKA 102 (143)
T ss_dssp HH--------HHHHHHHHHHHH
T ss_pred HH--------HHHHHHHHHHhC
Confidence 33 245567777764
No 24
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=84.42 E-value=1.1 Score=45.53 Aligned_cols=180 Identities=11% Similarity=0.059 Sum_probs=91.6
Q ss_pred eeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCccccc---ceEecCCceEEEeCC-CC
Q 015536 170 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPG---VLQLADGSHLIIDET-QL 245 (405)
Q Consensus 170 sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G---~LQLa~gT~lviDEt-~l 245 (405)
++-|.|.|| +-++.|.+.|.....+.. ..++.... ..++.. .+..+ ....+.+++++|||. .|
T Consensus 52 ~vLL~GppG----tGKTtlAr~ia~~~~~~f-~~l~a~~~------~~~~ir--~~~~~a~~~~~~~~~~iLfIDEI~~l 118 (447)
T 3pvs_A 52 SMILWGPPG----TGKTTLAEVIARYANADV-ERISAVTS------GVKEIR--EAIERARQNRNAGRRTILFVDEVHRF 118 (447)
T ss_dssp EEEEECSTT----SSHHHHHHHHHHHTTCEE-EEEETTTC------CHHHHH--HHHHHHHHHHHTTCCEEEEEETTTCC
T ss_pred EEEEECCCC----CcHHHHHHHHHHHhCCCe-EEEEeccC------CHHHHH--HHHHHHHHhhhcCCCcEEEEeChhhh
Confidence 799999998 678888888888775532 32332111 111100 00011 111356899999996 56
Q ss_pred CcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCCCcccCceeeeeccCCCCCCCCCChhhH-HH
Q 015536 246 ETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETL-EA 324 (405)
Q Consensus 246 ~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~~lp~d~~vpl~~~~~~~~~~~~~~~l-~~ 324 (405)
...+ ..+|-..++..++.+-+.... .....++--++|+ +. .+.+ .+.+.+++ ..
T Consensus 119 ~~~~--------q~~LL~~le~~~v~lI~att~-n~~~~l~~aL~sR-------~~-v~~l--------~~l~~edi~~i 173 (447)
T 3pvs_A 119 NKSQ--------QDAFLPHIEDGTITFIGATTE-NPSFELNSALLSR-------AR-VYLL--------KSLSTEDIEQV 173 (447)
T ss_dssp --------------CCHHHHHTTSCEEEEEESS-CGGGSSCHHHHTT-------EE-EEEC--------CCCCHHHHHHH
T ss_pred CHHH--------HHHHHHHHhcCceEEEecCCC-CcccccCHHHhCc-------ee-EEee--------CCcCHHHHHHH
Confidence 5443 445677777655333221100 0000111111222 11 1222 12233333 45
Q ss_pred HHHHHHHh-cc---CCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc--CCCCCCHHHHHHHHH
Q 015536 325 WRWYLASV-RS---LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASF--GETSLSLEHWQMVKE 395 (405)
Q Consensus 325 ~R~Yi~~a-r~---~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~--g~~~lt~e~w~~a~~ 395 (405)
++.++... +. ....+++++.++|.+.+ +. +.+.+...|..+-.+|... |...+|.++.+.++.
T Consensus 174 l~~~l~~~~~~~~~~~~~i~~~al~~L~~~~------~G--d~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 174 LTQAMEDKTRGYGGQDIVLPDETRRAIAELV------NG--DARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp HHHHHHCTTTSSTTSSEECCHHHHHHHHHHH------CS--CHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred HHHHHHHHhhhhccccCcCCHHHHHHHHHHC------CC--CHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHh
Confidence 55555542 22 34568999888885542 32 4677777777655554433 556899999888764
No 25
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.61 E-value=1.7 Score=39.87 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=63.8
Q ss_pred eeeEeecCCCCccchhHHHHHHHHHhhcCc----eEEEecch---hhhhcCCCCccccCCCC--cccccceEecCCceEE
Q 015536 169 LSLNLTCLSKESVSVFGNQVRLSVQNLLPF----TQCIPLTV---NYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLI 239 (405)
Q Consensus 169 ~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~----~~~l~lt~---~~Ln~~~~~P~kD~~t~--~L~~G~LQLa~gT~lv 239 (405)
.++.|.|.|| +-|+.+.+.+....++ .++++.+. +.+.+.-|-..+..-++ .-..|.+..++++.++
T Consensus 30 ~~vll~G~~G----tGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~ 105 (265)
T 2bjv_A 30 KPVLIIGERG----TGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLF 105 (265)
T ss_dssp SCEEEECCTT----SCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHTTTSEEE
T ss_pred CCEEEECCCC----CcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhcCCcEEE
Confidence 5789999998 7788999999888764 33443321 11111001001100011 1246788888999999
Q ss_pred EeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 240 IDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 240 iDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
|||- .|... -...|..+++.+.+. -.......+.++.++..|.
T Consensus 106 lDEi~~l~~~--------~q~~Ll~~l~~~~~~--~~g~~~~~~~~~~iI~atn 149 (265)
T 2bjv_A 106 LDELATAPMM--------VQEKLLRVIEYGELE--RVGGSQPLQVNVRLVCATN 149 (265)
T ss_dssp EESGGGSCHH--------HHHHHHHHHHHCEEC--CCCC--CEECCCEEEEEES
T ss_pred EechHhcCHH--------HHHHHHHHHHhCCee--cCCCcccccCCeEEEEecC
Confidence 9996 45432 256788888887542 1222345667777766665
No 26
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=79.38 E-value=25 Score=33.24 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=39.9
Q ss_pred ceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEec---CCceEEEeCC-
Q 015536 168 KLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLA---DGSHLIIDET- 243 (405)
Q Consensus 168 ~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa---~gT~lviDEt- 243 (405)
.-.+.|.|.|| +-+..|.+.+..-.... ++.++...+.+..+ ..+.......++.+ ..++++|||-
T Consensus 51 ~~~vLl~GppG----tGKT~la~aia~~~~~~-~~~v~~~~l~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid 120 (322)
T 3eie_A 51 TSGILLYGPPG----TGKSYLAKAVATEANST-FFSVSSSDLVSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVD 120 (322)
T ss_dssp CCEEEEECSSS----SCHHHHHHHHHHHHTCE-EEEEEHHHHHTTTG-----GGHHHHHHHHHHHHHHTSSEEEEEECGG
T ss_pred CCeEEEECCCC----CcHHHHHHHHHHHHCCC-EEEEchHHHhhccc-----chHHHHHHHHHHHHHhcCCeEEEechhh
Confidence 34699999998 66888888887766543 34455555533211 01112222233332 3479999995
Q ss_pred CCC
Q 015536 244 QLE 246 (405)
Q Consensus 244 ~l~ 246 (405)
.|.
T Consensus 121 ~l~ 123 (322)
T 3eie_A 121 ALT 123 (322)
T ss_dssp GGS
T ss_pred hhh
Confidence 554
No 27
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=79.03 E-value=2.6 Score=41.64 Aligned_cols=195 Identities=18% Similarity=0.157 Sum_probs=112.0
Q ss_pred cceeeEeecCCCCccchhHHHHHHHHHhhcCce--EEEecchhhhhc-----CCCCccccCCCC--cccccceEecCCce
Q 015536 167 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNT-----ASLAPKKDYQTN--RLIPGVLQLADGSH 237 (405)
Q Consensus 167 G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~--~~l~lt~~~Ln~-----~~~~P~kD~~t~--~L~~G~LQLa~gT~ 237 (405)
.++++.|.|.+| +-++.+.+.|..+.++. .++.+....+.. .-|--.|-.-|+ .-..|.+..|+||.
T Consensus 159 ~~~~vli~Ge~G----tGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gt 234 (387)
T 1ny5_A 159 AECPVLITGESG----VGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGT 234 (387)
T ss_dssp CCSCEEEECSTT----SSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSE
T ss_pred CCCCeEEecCCC----cCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcE
Confidence 467889999998 67888899999988763 344443222211 111111211122 34789999999999
Q ss_pred EEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCC------CcccCcee-------
Q 015536 238 LIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS------NIVPADLV------- 303 (405)
Q Consensus 238 lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS------~~lp~d~~------- 303 (405)
|.|||. .|... -...|-.+++.+++.. -......++|+.++.-|...- .-+..|+.
T Consensus 235 lfldei~~l~~~--------~q~~Ll~~l~~~~~~~--~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~ 304 (387)
T 1ny5_A 235 LFLDEIGELSLE--------AQAKLLRVIESGKFYR--LGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIE 304 (387)
T ss_dssp EEEESGGGCCHH--------HHHHHHHHHHHSEECC--BTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEE
T ss_pred EEEcChhhCCHH--------HHHHHHHHHhcCcEEe--CCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCe
Confidence 999996 46543 3677888898887543 234556788888777665211 01111211
Q ss_pred eeeccCCCCCCCCCChhhH-HHHHHHHHHh-ccC--C-CCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 015536 304 IPFQPSSAASFEVVPAETL-EAWRWYLASV-RSL--P-HSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSA 378 (405)
Q Consensus 304 vpl~~~~~~~~~~~~~~~l-~~~R~Yi~~a-r~~--~-~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~ 378 (405)
+.+.|-.. -.+++ ..++.|+... +.. . ..+++++.+.+.. -+=+=+-++|...+.-|- ..
T Consensus 305 i~lPpLre------R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~-------~~wpGNvreL~~~i~~~~--~~ 369 (387)
T 1ny5_A 305 IEIPPLRE------RKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLS-------YPWYGNVRELKNVIERAV--LF 369 (387)
T ss_dssp EECCCGGG------CHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHH-------SCCTTHHHHHHHHHHHHH--HH
T ss_pred ecCCcchh------ccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh-------CCCCcHHHHHHHHHHHHH--Hh
Confidence 11111111 12333 4667777654 222 2 4588888777643 121334678888877443 34
Q ss_pred HcCCCCCCHHHHH
Q 015536 379 SFGETSLSLEHWQ 391 (405)
Q Consensus 379 s~g~~~lt~e~w~ 391 (405)
+.| ..++.++..
T Consensus 370 ~~~-~~i~~~~l~ 381 (387)
T 1ny5_A 370 SEG-KFIDRGELS 381 (387)
T ss_dssp CCS-SEECHHHHH
T ss_pred CCC-CcCcHHHCc
Confidence 445 467777653
No 28
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=78.69 E-value=14 Score=37.84 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=94.5
Q ss_pred eeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEecCC---ceEEEeCC-C
Q 015536 169 LSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADG---SHLIIDET-Q 244 (405)
Q Consensus 169 ~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa~g---T~lviDEt-~ 244 (405)
-++.|.|.|| +-++.+.+.+..-.. ..++.++...+.+..+. ....-..|+++.+.+ +.|+|||- .
T Consensus 239 ~~vLL~GppG----tGKT~lAraia~~~~-~~fv~vn~~~l~~~~~g-----~~~~~~~~~f~~A~~~~p~iLfLDEId~ 308 (489)
T 3hu3_A 239 RGILLYGPPG----TGKTLIARAVANETG-AFFFLINGPEIMSKLAG-----ESESNLRKAFEEAEKNAPAIIFIDELDA 308 (489)
T ss_dssp CEEEEECSTT----SSHHHHHHHHHHHCS-SEEEEEEHHHHHTSCTT-----HHHHHHHHHHHHHHHTCSEEEEEESHHH
T ss_pred CcEEEECcCC----CCHHHHHHHHHHHhC-CCEEEEEchHhhhhhcc-----hhHHHHHHHHHHHHhcCCcEEEecchhh
Confidence 4699999998 678888888877764 34455665555432210 011223455555544 48999995 4
Q ss_pred CCcCcc---cccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCCCcc-------cCceeeeeccCCCCCC
Q 015536 245 LETGTL---NSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIV-------PADLVIPFQPSSAASF 314 (405)
Q Consensus 245 l~~G~L---~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~~l-------p~d~~vpl~~~~~~~~ 314 (405)
|....- .+...+-...|-.+|+... .+.++.++..+.....+- -|+..+.+.
T Consensus 309 l~~~~~~~~~~~~~~~~~~LL~~ld~~~-----------~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~------- 370 (489)
T 3hu3_A 309 IAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG------- 370 (489)
T ss_dssp HCBCTTSCCCHHHHHHHHHHHHHHHHSC-----------TTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECC-------
T ss_pred hccccccccchHHHHHHHHHHHHhhccc-----------cCCceEEEEecCCccccCHHHhCCCcCceEEEeC-------
Confidence 443211 1112223445555555321 122333332322111010 122222221
Q ss_pred CCCCh-hhHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC----------
Q 015536 315 EVVPA-ETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGET---------- 383 (405)
Q Consensus 315 ~~~~~-~~l~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~---------- 383 (405)
.++. +..+.|+.++ +......+.++.+. .. + ....+..++..+++-|-+.|...+..
T Consensus 371 -~P~~~eR~~IL~~~~---~~~~l~~~~~l~~l------a~-~-t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~ 438 (489)
T 3hu3_A 371 -IPDATGRLEILQIHT---KNMKLADDVDLEQV------AN-E-THGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 438 (489)
T ss_dssp -CCCHHHHHHHHHHHT---TTSCBCTTCCHHHH------HH-T-CTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCC
T ss_pred -CCCHHHHHHHHHHHH---hcCCCcchhhHHHH------HH-H-ccCCcHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 1122 2334455442 22222222222221 11 1 22467899999999999999888754
Q ss_pred -------CCCHHHHHHHHH
Q 015536 384 -------SLSLEHWQMVKE 395 (405)
Q Consensus 384 -------~lt~e~w~~a~~ 395 (405)
.++.+|++.|++
T Consensus 439 ~~~~~~~~vt~edf~~Al~ 457 (489)
T 3hu3_A 439 AEVMNSLAVTMDDFRWALS 457 (489)
T ss_dssp HHHHHHCCBCHHHHHHHHT
T ss_pred hhhcccCcCCHHHHHHHHH
Confidence 478899988865
No 29
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=77.98 E-value=20 Score=33.01 Aligned_cols=52 Identities=10% Similarity=0.148 Sum_probs=34.0
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC------------CCCCHHHHHHHH
Q 015536 336 PHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGE------------TSLSLEHWQMVK 394 (405)
Q Consensus 336 ~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~------------~~lt~e~w~~a~ 394 (405)
...++++..+.|.. .. ...+..++..+++-|-+.|..... ..++.+|+..|+
T Consensus 206 ~~~~~~~~~~~la~------~~-~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~ 269 (297)
T 3b9p_A 206 GSPLDTEALRRLAK------IT-DGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSL 269 (297)
T ss_dssp SCCSCHHHHHHHHH------HT-TTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHT
T ss_pred CCCCCHHHHHHHHH------Hc-CCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHH
Confidence 44566665554422 12 346778888888877777766542 568899988775
No 30
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=76.69 E-value=1.7 Score=36.38 Aligned_cols=75 Identities=13% Similarity=0.073 Sum_probs=49.1
Q ss_pred cceeeEeecCCCCccchhHHHHHHHHHhhcCceE--EEecchhhhhcCCCCccccCCCCcccccceEecCCceEEEeCC-
Q 015536 167 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ--CIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDET- 243 (405)
Q Consensus 167 G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~--~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa~gT~lviDEt- 243 (405)
...++-|.|.|| +-++.+.+.+....++.. ++ +....+.+. .-..|.+..++|+.++|||-
T Consensus 23 ~~~~vll~G~~G----tGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-----------~~~~~~~~~a~~g~l~ldei~ 86 (145)
T 3n70_A 23 TDIAVWLYGAPG----TGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-----------PQLNDFIALAQGGTLVLSHPE 86 (145)
T ss_dssp CCSCEEEESSTT----SSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----------SCHHHHHHHHTTSCEEEECGG
T ss_pred CCCCEEEECCCC----CCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----------hhhhcHHHHcCCcEEEEcChH
Confidence 456799999998 778899999988775421 12 222222111 23567788889999999996
Q ss_pred CCCcCcccccchhHHHHHHHHH
Q 015536 244 QLETGTLNSTGVENARLLKNLM 265 (405)
Q Consensus 244 ~l~~G~L~~~Gv~N~~aL~~li 265 (405)
.|... -...|-.+|
T Consensus 87 ~l~~~--------~q~~Ll~~l 100 (145)
T 3n70_A 87 HLTRE--------QQYHLVQLQ 100 (145)
T ss_dssp GSCHH--------HHHHHHHHH
T ss_pred HCCHH--------HHHHHHHHH
Confidence 45433 245566666
No 31
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=75.80 E-value=5.2 Score=38.06 Aligned_cols=112 Identities=15% Similarity=0.118 Sum_probs=66.7
Q ss_pred cceeeEeecCCCCccchhHHHHHHHHHhhcCceE--EEecchhhh-----hcCCCCccccCCCC--cccccceEecCCce
Q 015536 167 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ--CIPLTVNYL-----NTASLAPKKDYQTN--RLIPGVLQLADGSH 237 (405)
Q Consensus 167 G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~--~l~lt~~~L-----n~~~~~P~kD~~t~--~L~~G~LQLa~gT~ 237 (405)
.+.++.|.|.|| +-++.+.+.|....++.. ++.+....+ .+.-|-..+-.-++ .-..|.+..++|+.
T Consensus 24 ~~~~vLi~Ge~G----tGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~ 99 (304)
T 1ojl_A 24 SDATVLIHGDSG----TGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 99 (304)
T ss_dssp TTSCEEEESCTT----SCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSE
T ss_pred CCCcEEEECCCC----chHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcCCCE
Confidence 356899999998 678889999988876532 222211111 11111111111111 23568888999999
Q ss_pred EEEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeec
Q 015536 238 LIIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 292 (405)
Q Consensus 238 lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~ 292 (405)
++|||. .|... -...|-.+++...+. --......+.|+.++..|.
T Consensus 100 L~LDEi~~l~~~--------~q~~Ll~~l~~~~~~--~~g~~~~~~~~~riI~atn 145 (304)
T 1ojl_A 100 LFLDEIGDISPL--------MQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATH 145 (304)
T ss_dssp EEEESCTTCCHH--------HHHHHHHHHHSSBCC--BTTBCCCCBCCCEEEEEES
T ss_pred EEEeccccCCHH--------HHHHHHHHHhcCEee--ecCCcccccCCeEEEEecC
Confidence 999996 45432 355677888876542 1233455677887777665
No 32
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=75.51 E-value=9.4 Score=38.33 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=50.2
Q ss_pred HHHHHHHHHh-ccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 323 EAWRWYLASV-RSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 323 ~~~R~Yi~~a-r~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
+.++.||... ......+++++.++|..-.. +. +.+.-..++..|+++|...|+..++.++.++|..+
T Consensus 369 ~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~-----~g--~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 369 QEMKQIIKIRAQTEGINISEEALNHLGEIGT-----KT--TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp HHHHHHHHHHHHHHTCCBCHHHHHHHHHHHH-----HS--CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcc-----CC--CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 4555555432 23357799998888754221 12 57888889999999999999999999999999988
No 33
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=74.60 E-value=42 Score=29.06 Aligned_cols=61 Identities=13% Similarity=0.057 Sum_probs=42.1
Q ss_pred HHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 323 EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 323 ~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
+.++.++. ..+..+++++.++|.+.+ .. +.+++..++.-+...|...| ..+|.++++.+++
T Consensus 181 ~~l~~~~~---~~~~~~~~~~~~~l~~~~------~g--~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 181 AALQRRAA---MRGLQLPEDVGRFLLNRM------AR--DLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHH---HTTCCCCHHHHHHHHHHT------TT--CHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHH---HcCCCCCHHHHHHHHHHc------cC--CHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 44444443 345678898887775432 22 57888888887777776666 4699999998875
No 34
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=74.06 E-value=28 Score=33.48 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=34.5
Q ss_pred cCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC------------CCCCCHHHHHHHHH
Q 015536 334 SLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFG------------ETSLSLEHWQMVKE 395 (405)
Q Consensus 334 ~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g------------~~~lt~e~w~~a~~ 395 (405)
.....++++..+.|.. +. ...+..++..+++-|-..+.... ...++.+|+..|++
T Consensus 266 ~~~~~l~~~~l~~la~------~t-~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~ 332 (357)
T 3d8b_A 266 KEQCCLSEEEIEQIVQ------QS-DAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFR 332 (357)
T ss_dssp TSCBCCCHHHHHHHHH------HT-TTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHH
T ss_pred hcCCCccHHHHHHHHH------Hc-CCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHH
Confidence 3455677765554422 22 24678888888887766665432 25788899888764
No 35
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.23 E-value=43 Score=33.59 Aligned_cols=187 Identities=16% Similarity=0.186 Sum_probs=98.5
Q ss_pred eEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEecC---CceEEEeCC-CCC
Q 015536 171 LNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLAD---GSHLIIDET-QLE 246 (405)
Q Consensus 171 Lnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa~---gT~lviDEt-~l~ 246 (405)
+.|.|+|| +-+..|.++++.-+-... +.++...+-+.. -.++.+...-+.+.|. -.++.|||. .+-
T Consensus 185 vLL~GPPG----TGKTllAkAiA~e~~~~f-~~v~~s~l~sk~-----vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~ 254 (405)
T 4b4t_J 185 VILYGPPG----TGKTLLARAVAHHTDCKF-IRVSGAELVQKY-----IGEGSRMVRELFVMAREHAPSIIFMDEIDSIG 254 (405)
T ss_dssp EEEESCSS----SSHHHHHHHHHHHHTCEE-EEEEGGGGSCSS-----TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCT
T ss_pred eEEeCCCC----CCHHHHHHHHHHhhCCCc-eEEEhHHhhccc-----cchHHHHHHHHHHHHHHhCCceEeeecchhhc
Confidence 78999998 778888888887765543 346655553321 1122233333333332 467899995 554
Q ss_pred cCccc--ccchh-HHHHHHHHHHhCceeeeecccceeeeeccce-EEeecCCCCcc--------cCceeeeeccCCCCCC
Q 015536 247 TGTLN--STGVE-NARLLKNLMEFQKVEYNFEYYKMEMIADVQM-LILSEGKSNIV--------PADLVIPFQPSSAASF 314 (405)
Q Consensus 247 ~G~L~--~~Gv~-N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~-lvLS~gKS~~l--------p~d~~vpl~~~~~~~~ 314 (405)
...-. ..|-. -...+..++.+- | .+ ...-++ +|.++.+-..+ -||..|.+.
T Consensus 255 ~~R~~~~~~~~~~~~~~l~~lL~~l----D-g~-----~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~------- 317 (405)
T 4b4t_J 255 STRVEGSGGGDSEVQRTMLELLNQL----D-GF-----ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFP------- 317 (405)
T ss_dssp TSCSCSSSGGGGHHHHHHHHHHHHH----H-TT-----TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECC-------
T ss_pred cCCCCCCCCCcHHHHHHHHHHHHhh----h-cc-----CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcC-------
Confidence 32111 11211 122344444321 1 11 111223 33333322111 144444332
Q ss_pred CCCC-hhhHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 015536 315 EVVP-AETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMV 393 (405)
Q Consensus 315 ~~~~-~~~l~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a 393 (405)
.++ +...+.||.|+.... ....+ +..+ | . ++.+ ..+..|+..+.+-|-+.|+..++..++.+|++.|
T Consensus 318 -lPd~~~R~~Il~~~~~~~~-l~~dv--dl~~-l-----A-~~t~-G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~A 385 (405)
T 4b4t_J 318 -PPSVAARAEILRIHSRKMN-LTRGI--NLRK-V-----A-EKMN-GCSGADVKGVCTEAGMYALRERRIHVTQEDFELA 385 (405)
T ss_dssp -CCCHHHHHHHHHHHHTTSB-CCSSC--CHHH-H-----H-HHCC-SCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHH
T ss_pred -CcCHHHHHHHHHHHhcCCC-CCccC--CHHH-H-----H-HHCC-CCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 112 234567776653321 11111 1111 1 1 2222 4789999999999999999999999999999999
Q ss_pred HHH
Q 015536 394 KEL 396 (405)
Q Consensus 394 ~~L 396 (405)
++=
T Consensus 386 l~~ 388 (405)
T 4b4t_J 386 VGK 388 (405)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 36
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=72.72 E-value=35 Score=32.87 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=39.9
Q ss_pred eeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEec---CCceEEEeCC-C
Q 015536 169 LSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLA---DGSHLIIDET-Q 244 (405)
Q Consensus 169 ~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa---~gT~lviDEt-~ 244 (405)
-++.|.|.|| +-+..|.+.+..-+.. .++.++...+....+ ..+......++..+ ..++++|||- .
T Consensus 85 ~~iLL~GppG----tGKT~la~ala~~~~~-~~~~v~~~~l~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~ 154 (355)
T 2qp9_X 85 SGILLYGPPG----TGKSYLAKAVATEANS-TFFSVSSSDLVSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDA 154 (355)
T ss_dssp CCEEEECSTT----SCHHHHHHHHHHHHTC-EEEEEEHHHHHSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGG
T ss_pred ceEEEECCCC----CcHHHHHHHHHHHhCC-CEEEeeHHHHhhhhc-----chHHHHHHHHHHHHHHcCCeEEEEechHh
Confidence 3689999998 6677777777766643 334455555533211 11223333444444 5789999995 4
Q ss_pred CC
Q 015536 245 LE 246 (405)
Q Consensus 245 l~ 246 (405)
|.
T Consensus 155 l~ 156 (355)
T 2qp9_X 155 LT 156 (355)
T ss_dssp GT
T ss_pred hc
Confidence 54
No 37
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=72.33 E-value=9.3 Score=38.36 Aligned_cols=52 Identities=10% Similarity=0.117 Sum_probs=40.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 335 LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 335 ~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
.+..+++++.++|.. ..+. +.+++..+|..+.+.|...|+ .+|.++++.+++
T Consensus 279 ~~~~i~~e~l~~la~------~~~g--n~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~ 330 (440)
T 2z4s_A 279 EHGELPEEVLNFVAE------NVDD--NLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLK 330 (440)
T ss_dssp HTCCCCTTHHHHHHH------HCCS--CHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTS
T ss_pred cCCCCCHHHHHHHHH------hcCC--CHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 356789998887753 2222 689999999999888888886 699999998864
No 38
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=71.35 E-value=16 Score=34.44 Aligned_cols=68 Identities=12% Similarity=0.054 Sum_probs=45.8
Q ss_pred HHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 323 EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 323 ~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
+.++.++..+ .....+++++.+.|.+.. ....=+.+.+..++..|-..|...|...++.++++.|++-
T Consensus 208 ~il~~~~~~~-~~~~~~~~~~~~~l~~~~-----~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~ 275 (387)
T 2v1u_A 208 DILETRAEEA-FNPGVLDPDVVPLCAALA-----AREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAE 275 (387)
T ss_dssp HHHHHHHHHH-BCTTTBCSSHHHHHHHHH-----HSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHhh-ccCCCCCHHHHHHHHHHH-----HHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 3444444322 135678888877764432 1111247888888888888888889999999999998753
No 39
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=71.06 E-value=21 Score=38.89 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=50.2
Q ss_pred eeEeecCCCCccchhHHHHHHHHHhhcCce--EEEecchhhhhcC----C-C-Ccc--ccCCCCcccccceEecCCceEE
Q 015536 170 SLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNTA----S-L-APK--KDYQTNRLIPGVLQLADGSHLI 239 (405)
Q Consensus 170 sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~--~~l~lt~~~Ln~~----~-~-~P~--kD~~t~~L~~G~LQLa~gT~lv 239 (405)
++.|.|.|| +-+..+.+.|...+++. .++.+....+... . | .|. .-++.+..-.+.+.-.++++++
T Consensus 590 ~vLl~Gp~G----tGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~ 665 (854)
T 1qvr_A 590 SFLFLGPTG----VGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVIL 665 (854)
T ss_dssp EEEEBSCSS----SSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEE
T ss_pred EEEEECCCC----CCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEE
Confidence 789999998 67888888888776431 2222222222111 0 1 010 0111112233444556789999
Q ss_pred EeCC-CCCcCcccccchhHHHHHHHHHHhCcee
Q 015536 240 IDET-QLETGTLNSTGVENARLLKNLMEFQKVE 271 (405)
Q Consensus 240 iDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~ 271 (405)
|||- +|... -...|-.+|+...+.
T Consensus 666 lDEi~~l~~~--------~~~~Ll~~l~~~~~~ 690 (854)
T 1qvr_A 666 FDEIEKAHPD--------VFNILLQILDDGRLT 690 (854)
T ss_dssp ESSGGGSCHH--------HHHHHHHHHTTTEEC
T ss_pred EecccccCHH--------HHHHHHHHhccCceE
Confidence 9996 44432 367788899988765
No 40
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=69.64 E-value=6.3 Score=38.65 Aligned_cols=181 Identities=14% Similarity=0.134 Sum_probs=102.6
Q ss_pred cceeeEeecCCCCccchhHHHHHHHHHhhcCceE-EEecchhhhhcCC-----CCccccCCCC--cccccceEecCCceE
Q 015536 167 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ-CIPLTVNYLNTAS-----LAPKKDYQTN--RLIPGVLQLADGSHL 238 (405)
Q Consensus 167 G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~-~l~lt~~~Ln~~~-----~~P~kD~~t~--~L~~G~LQLa~gT~l 238 (405)
.+.++.+.|.++ +-++.+.+.+....++.. ++.+....++... |--.|..-|+ +-..|.+..|+||.|
T Consensus 151 ~~~~vli~GesG----tGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtl 226 (368)
T 3dzd_A 151 SKAPVLITGESG----TGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTL 226 (368)
T ss_dssp SCSCEEEECCTT----SSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEE
T ss_pred cchhheEEeCCC----chHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCCeE
Confidence 456788999887 567888888888877643 4444444332221 1111221222 346799999999999
Q ss_pred EEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCCC------cccCce-------ee
Q 015536 239 IIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSN------IVPADL-------VI 304 (405)
Q Consensus 239 viDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~------~lp~d~-------~v 304 (405)
.|||- .|... -...|-.+++.+++.- -.....+++|++++.-|...-. -+.-|+ .+
T Consensus 227 fldei~~l~~~--------~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i 296 (368)
T 3dzd_A 227 FLDEVGELDQR--------VQAKLLRVLETGSFTR--LGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQI 296 (368)
T ss_dssp EEETGGGSCHH--------HHHHHHHHHHHSEECC--BTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEE
T ss_pred EecChhhCCHH--------HHHHHHHHHHhCCccc--CCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEE
Confidence 99996 45543 3667778888876542 2334567889988877763210 011121 11
Q ss_pred eeccCCCCCCCCCChhhHHHHHHHHHHhc-cC---CCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015536 305 PFQPSSAASFEVVPAETLEAWRWYLASVR-SL---PHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMG 373 (405)
Q Consensus 305 pl~~~~~~~~~~~~~~~l~~~R~Yi~~ar-~~---~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~la 373 (405)
.+.|-... .++-...++.|+.... .. ...+++++.+.+.. -+=+=+-++|...+.-+
T Consensus 297 ~lPpLreR-----~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~-------~~wpGNvreL~n~i~~~ 357 (368)
T 3dzd_A 297 YLPPLRER-----GKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMK-------QEWKGNVRELKNLIERA 357 (368)
T ss_dssp ECCCGGGS-----TTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHT-------CCCTTHHHHHHHHHHHH
T ss_pred eCCChhhc-----hhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh-------CCCCcHHHHHHHHHHHH
Confidence 11111110 1223356677776543 22 35689988777632 11122357777776633
No 41
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.84 E-value=30 Score=32.33 Aligned_cols=63 Identities=6% Similarity=-0.086 Sum_probs=34.9
Q ss_pred HHHHHHHH-hccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC-CCCHHHHHHHH
Q 015536 324 AWRWYLAS-VRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGET-SLSLEHWQMVK 394 (405)
Q Consensus 324 ~~R~Yi~~-ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~-~lt~e~w~~a~ 394 (405)
.++.++.. ++..+..+++++.++|.+. .+. +.+.+..++.-+.+++...|.. .+|.++++.+.
T Consensus 196 ~~~~~l~~~~~~~~~~i~~~~l~~l~~~------~~G--~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~ 260 (353)
T 1sxj_D 196 NAIDRLRFISEQENVKCDDGVLERILDI------SAG--DLRRGITLLQSASKGAQYLGDGKNITSTQVEELA 260 (353)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHH------TSS--CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHH------cCC--CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHh
Confidence 44444443 2334677899888777432 222 2455555555544444333333 78888887664
No 42
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=68.57 E-value=42 Score=33.46 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=39.3
Q ss_pred eeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEe---cCCceEEEeCC-C
Q 015536 169 LSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQL---ADGSHLIIDET-Q 244 (405)
Q Consensus 169 ~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQL---a~gT~lviDEt-~ 244 (405)
-++.|.|.|| +-+..|.+.+..-+....++.++...+.+.. -..+.......++. ...++++|||- .
T Consensus 168 ~~vLL~GppG----tGKT~lA~aia~~~~~~~~~~v~~~~l~~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~ 238 (444)
T 2zan_A 168 RGILLFGPPG----TGKSYLAKAVATEANNSTFFSISSSDLVSKW-----LGESEKLVKNLFQLARENKPSIIFIDEIDS 238 (444)
T ss_dssp SEEEEECSTT----SSHHHHHHHHHHHCCSSEEEEECCC--------------CCCTHHHHHHHHHHSCSEEEEESCTTT
T ss_pred ceEEEECCCC----CCHHHHHHHHHHHcCCCCEEEEeHHHHHhhh-----cchHHHHHHHHHHHHHHcCCeEEEEechHh
Confidence 4789999998 6788888888887755555555544443211 11122222233333 24579999995 5
Q ss_pred CC
Q 015536 245 LE 246 (405)
Q Consensus 245 l~ 246 (405)
|.
T Consensus 239 l~ 240 (444)
T 2zan_A 239 LC 240 (444)
T ss_dssp TC
T ss_pred hc
Confidence 53
No 43
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=65.80 E-value=2.3 Score=41.24 Aligned_cols=134 Identities=15% Similarity=0.127 Sum_probs=75.5
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhccccccc-----CceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEec
Q 015536 130 SLLRHLTSILGNDGIAAHLMLLHLLSRVHARI-----DNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPL 204 (405)
Q Consensus 130 ~li~~La~~l~GD~laAeyLLL~L~s~V~~r~-----d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~l 204 (405)
.+...|.+.+.|...+.+.+...+........ .......-++.|.|.|| +-++.+.+.|+..+. ..++.+
T Consensus 8 ~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppG----tGKT~la~~ia~~~~-~~~~~~ 82 (363)
T 3hws_A 8 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTG----SGKTLLAETLARLLD-VPFTMA 82 (363)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTT----SSHHHHHHHHHHHTT-CCEEEE
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCC----CCHHHHHHHHHHHcC-CCEEEe
Confidence 35566777788999999988777653322211 12223556899999998 678888888888774 334445
Q ss_pred chhhhhcCCCCcc--ccCCCC--cccccceEecCCceEEEeCC-CCCcCcccc------cchhHHHHHHHHHHhC
Q 015536 205 TVNYLNTASLAPK--KDYQTN--RLIPGVLQLADGSHLIIDET-QLETGTLNS------TGVENARLLKNLMEFQ 268 (405)
Q Consensus 205 t~~~Ln~~~~~P~--kD~~t~--~L~~G~LQLa~gT~lviDEt-~l~~G~L~~------~Gv~N~~aL~~li~~Q 268 (405)
+...+....+.-. ....++ .-..|.+..+++++++|||- +|....-+. .|-.-..+|-.+|+..
T Consensus 83 ~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~ 157 (363)
T 3hws_A 83 DATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 157 (363)
T ss_dssp EHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC
T ss_pred chHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCc
Confidence 5554432111100 000000 01223344467899999995 465431111 0111377888888843
No 44
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=63.08 E-value=22 Score=36.67 Aligned_cols=200 Identities=13% Similarity=0.145 Sum_probs=87.5
Q ss_pred eeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCC-CCcc-ccCCCCcccccc---eEec--CCceEEEeC
Q 015536 170 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTAS-LAPK-KDYQTNRLIPGV---LQLA--DGSHLIIDE 242 (405)
Q Consensus 170 sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~-~~P~-kD~~t~~L~~G~---LQLa--~gT~lviDE 242 (405)
++.|.|.|| +-++.|.+.|........ ..+...++.... +... +.| .+...... +..+ .+++++|||
T Consensus 110 ~vll~Gp~G----tGKTtlar~ia~~l~~~~-~~i~~~~~~~~~~~~g~~~~~-ig~~~~~~~~~~~~a~~~~~vl~lDE 183 (543)
T 3m6a_A 110 ILCLAGPPG----VGKTSLAKSIAKSLGRKF-VRISLGGVRDESEIRGHRRTY-VGAMPGRIIQGMKKAGKLNPVFLLDE 183 (543)
T ss_dssp EEEEESSSS----SSHHHHHHHHHHHHTCEE-EEECCCC---------------------CHHHHHHTTCSSSEEEEEEE
T ss_pred EEEEECCCC----CCHHHHHHHHHHhcCCCe-EEEEecccchhhhhhhHHHHH-hccCchHHHHHHHHhhccCCEEEEhh
Confidence 689999998 678889999888875432 223333322211 0000 111 11111111 1122 567999999
Q ss_pred C-CCCcCcccccchhHHHHHHHHHHh-CceeeeecccceeeeeccceEEeecCCCCccc------CceeeeeccCCCCCC
Q 015536 243 T-QLETGTLNSTGVENARLLKNLMEF-QKVEYNFEYYKMEMIADVQMLILSEGKSNIVP------ADLVIPFQPSSAASF 314 (405)
Q Consensus 243 t-~l~~G~L~~~Gv~N~~aL~~li~~-Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~~lp------~d~~vpl~~~~~~~~ 314 (405)
. +|.... .| .-..+|-++|+. |.-.|.=.|....++..--++|.+.....-++ ++ .+.+
T Consensus 184 id~l~~~~---~~-~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~-vi~~-------- 250 (543)
T 3m6a_A 184 IDKMSSDF---RG-DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRME-IINI-------- 250 (543)
T ss_dssp SSSCC-------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEE-EEEC--------
T ss_pred hhhhhhhh---cc-CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcc-eeee--------
Confidence 5 565431 00 012344445543 21122212333333323234444444331122 21 1111
Q ss_pred CCCC-hhhHHHHHHHHHHh--cc-----CCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHH----HHHHHHHHHc--
Q 015536 315 EVVP-AETLEAWRWYLASV--RS-----LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLL----TMGRLMSASF-- 380 (405)
Q Consensus 315 ~~~~-~~~l~~~R~Yi~~a--r~-----~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L----~laRllA~s~-- 380 (405)
..++ ++....++.|+..- +. ....+++++.+.|-+.| +..-+.++|.+.+ +.+...+...
T Consensus 251 ~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~------~~~~~vR~L~~~i~~~~~~aa~~~~~~~~ 324 (543)
T 3m6a_A 251 AGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY------TREAGVRSLERQLAAICRKAAKAIVAEER 324 (543)
T ss_dssp CCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH------CCCSSSHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC------ChhhchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 1122 23456677766331 11 14567888888875544 2223456665443 3332222222
Q ss_pred CCCCCCHHHHHHHH
Q 015536 381 GETSLSLEHWQMVK 394 (405)
Q Consensus 381 g~~~lt~e~w~~a~ 394 (405)
+...++.++.+.++
T Consensus 325 ~~~~It~~~l~~~L 338 (543)
T 3m6a_A 325 KRITVTEKNLQDFI 338 (543)
T ss_dssp SCCEECTTTTHHHH
T ss_pred cceecCHHHHHHHh
Confidence 34467877777665
No 45
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=63.00 E-value=41 Score=34.33 Aligned_cols=36 Identities=19% Similarity=0.417 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 360 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 360 ~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
..+.+||..++.-|.++|...|...++.++++.|+.
T Consensus 219 G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~ 254 (476)
T 2ce7_A 219 GFVGADLENLVNEAALLAAREGRDKITMKDFEEAID 254 (476)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 457799999999999999999999999999999875
No 46
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.29 E-value=25 Score=35.53 Aligned_cols=188 Identities=14% Similarity=0.163 Sum_probs=99.7
Q ss_pred eeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEec---CCceEEEeCC-CC
Q 015536 170 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLA---DGSHLIIDET-QL 245 (405)
Q Consensus 170 sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa---~gT~lviDEt-~l 245 (405)
-+.|.|+|| +-+..|.++++.-+-.. ++.++...|-+.. -.++.++..-+.+.| ...++.|||. .+
T Consensus 217 GvLLyGPPG----TGKTllAkAiA~e~~~~-f~~v~~s~l~~~~-----vGese~~ir~lF~~A~~~aP~IifiDEiDal 286 (434)
T 4b4t_M 217 GALMYGPPG----TGKTLLARACAAQTNAT-FLKLAAPQLVQMY-----IGEGAKLVRDAFALAKEKAPTIIFIDELDAI 286 (434)
T ss_dssp EEEEESCTT----SSHHHHHHHHHHHHTCE-EEEEEGGGGCSSC-----SSHHHHHHHHHHHHHHHHCSEEEEEECTHHH
T ss_pred eeEEECcCC----CCHHHHHHHHHHHhCCC-EEEEehhhhhhcc-----cchHHHHHHHHHHHHHhcCCeEEeecchhhh
Confidence 478999998 77888888888776554 3446666653321 111223333333333 2578999995 33
Q ss_pred CcC--cccccchhHH-HHHHHHHHhCceeeeecccceeeeeccceEE-eecCCCC-----cc-c--CceeeeeccCCCCC
Q 015536 246 ETG--TLNSTGVENA-RLLKNLMEFQKVEYNFEYYKMEMIADVQMLI-LSEGKSN-----IV-P--ADLVIPFQPSSAAS 313 (405)
Q Consensus 246 ~~G--~L~~~Gv~N~-~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lv-LS~gKS~-----~l-p--~d~~vpl~~~~~~~ 313 (405)
-.. .-+..|-... ..+..++++- | .+ ..+-+++| .++.+-. ++ | ||..|.+.. ++
T Consensus 287 ~~~R~~~~~~~~~~~~~~~~~lL~~l----d-g~-----~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~l-Pd-- 353 (434)
T 4b4t_M 287 GTKRFDSEKSGDREVQRTMLELLNQL----D-GF-----SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPL-PS-- 353 (434)
T ss_dssp HCCCSSGGGGTTHHHHHHHHHHHHHH----T-TS-----CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCC-CC--
T ss_pred hhccCCCCCCCchHHHHHHHHHHHHh----h-cc-----CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCC-cC--
Confidence 221 1112222222 2333343321 1 11 11223333 3443321 11 1 444444321 00
Q ss_pred CCCCChhhHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 015536 314 FEVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMV 393 (405)
Q Consensus 314 ~~~~~~~~l~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a 393 (405)
.+...+.|+.|+..... ...++ . +.| . ++.+ ..|..|+..+.+-|-+.|+..|+..++.+|+..|
T Consensus 354 ----~~~R~~Il~~~~~~~~~-~~dvd--l-~~l-----A-~~t~-G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~A 418 (434)
T 4b4t_M 354 ----EDSRAQILQIHSRKMTT-DDDIN--W-QEL-----A-RSTD-EFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEG 418 (434)
T ss_dssp ----HHHHHHHHHHHHHHSCB-CSCCC--H-HHH-----H-HHCS-SCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCCCC-CCcCC--H-HHH-----H-HhCC-CCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 12345678877655322 12221 1 111 1 2222 4789999999999999999999999999999998
Q ss_pred HH
Q 015536 394 KE 395 (405)
Q Consensus 394 ~~ 395 (405)
++
T Consensus 419 l~ 420 (434)
T 4b4t_M 419 IS 420 (434)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 47
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.55 E-value=34 Score=34.75 Aligned_cols=185 Identities=18% Similarity=0.179 Sum_probs=97.1
Q ss_pred eEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEecC---CceEEEeCC-CCC
Q 015536 171 LNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLAD---GSHLIIDET-QLE 246 (405)
Q Consensus 171 Lnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa~---gT~lviDEt-~l~ 246 (405)
+.|.|+|| +-+..|.++++.-+-... +.++...+-+.. -.++.++..-+...|. -.++.|||. .+-
T Consensus 219 vLLyGPPG----TGKTlLAkAiA~e~~~~f-i~v~~s~l~sk~-----vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~ 288 (437)
T 4b4t_I 219 VILYGAPG----TGKTLLAKAVANQTSATF-LRIVGSELIQKY-----LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIG 288 (437)
T ss_dssp EEEESSTT----TTHHHHHHHHHHHHTCEE-EEEESGGGCCSS-----SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSS
T ss_pred CceECCCC----chHHHHHHHHHHHhCCCE-EEEEHHHhhhcc-----CchHHHHHHHHHHHHHhcCCcEEEEehhhhhc
Confidence 89999998 778889999887765543 335655553321 1112223223333332 468999994 443
Q ss_pred cCc--ccccchh-HHHHHHHHHHhCceeeeecccceeeeeccc-eEEeecCCCC-----cc---cCceeeeeccCCCCCC
Q 015536 247 TGT--LNSTGVE-NARLLKNLMEFQKVEYNFEYYKMEMIADVQ-MLILSEGKSN-----IV---PADLVIPFQPSSAASF 314 (405)
Q Consensus 247 ~G~--L~~~Gv~-N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~-~lvLS~gKS~-----~l---p~d~~vpl~~~~~~~~ 314 (405)
... -+..|-. -...+..++++- | .+ ...-+ ++|.++.+-. ++ -+|..|.+.
T Consensus 289 ~~R~~~~~~~~~~~~~~l~~LL~~l----D-g~-----~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~------- 351 (437)
T 4b4t_I 289 TKRYDSNSGGEREIQRTMLELLNQL----D-GF-----DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFE------- 351 (437)
T ss_dssp CCCSCSSCSSCCHHHHHHHHHHHHH----H-HC-----CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCC-------
T ss_pred ccCCCCCCCccHHHHHHHHHHHHHh----h-Cc-----CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcC-------
Confidence 211 1111211 122333444321 1 11 11112 3333443221 11 134333331
Q ss_pred CCCC-hhhHHHHHHHHHHhccCCCCCChhH-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 015536 315 EVVP-AETLEAWRWYLASVRSLPHSIESDM-QKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQM 392 (405)
Q Consensus 315 ~~~~-~~~l~~~R~Yi~~ar~~~~~i~~e~-~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~ 392 (405)
.++ +...+.|+.|+... .+++++ .+.| . +..+ ..|..|+..+.+-|-+.|+..++..++.+|++.
T Consensus 352 -lPd~~~R~~Il~~~l~~~-----~l~~dvdl~~L-----A-~~T~-GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~ 418 (437)
T 4b4t_I 352 -NPDLSTKKKILGIHTSKM-----NLSEDVNLETL-----V-TTKD-DLSGADIQAMCTEAGLLALRERRMQVTAEDFKQ 418 (437)
T ss_dssp -CCCHHHHHHHHHHHHTTS-----CBCSCCCHHHH-----H-HHCC-SCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHH
T ss_pred -CcCHHHHHHHHHHHhcCC-----CCCCcCCHHHH-----H-HhCC-CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 112 23456677665432 222221 1111 2 2222 478999999999999999999999999999999
Q ss_pred HHH
Q 015536 393 VKE 395 (405)
Q Consensus 393 a~~ 395 (405)
|++
T Consensus 419 Al~ 421 (437)
T 4b4t_I 419 AKE 421 (437)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
No 48
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=55.50 E-value=92 Score=31.85 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 361 LGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 361 it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
.+.+||..++.-|-++|...|...++.++.+.|++
T Consensus 235 ~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~ 269 (499)
T 2dhr_A 235 FVGADLENLLNEAALLAAREGRRKITMKDLEEAAD 269 (499)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Confidence 56789999999888888888888999999998875
No 49
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.81 E-value=56 Score=33.15 Aligned_cols=178 Identities=11% Similarity=0.126 Sum_probs=84.8
Q ss_pred eeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCC-c-cccCCCCcccccce--------EecCCceE
Q 015536 169 LSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLA-P-KKDYQTNRLIPGVL--------QLADGSHL 238 (405)
Q Consensus 169 ~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~-P-~kD~~t~~L~~G~L--------QLa~gT~l 238 (405)
-++.|.|.|| +-+..+.+.+..-+.. .++.++...+....+. . .+....+.-..|.+ .-..+.++
T Consensus 78 ~~lLL~GppG----tGKTtla~~la~~l~~-~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (516)
T 1sxj_A 78 RAAMLYGPPG----IGKTTAAHLVAQELGY-DILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVI 152 (516)
T ss_dssp SEEEEECSTT----SSHHHHHHHHHHHTTC-EEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEE
T ss_pred cEEEEECCCC----CCHHHHHHHHHHHcCC-CEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEE
Confidence 3799999998 6677788777766632 2333332221110000 0 00000000001111 12457889
Q ss_pred EEeCC-CCCcCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCC-C-cccC---ceeeeeccCCCC
Q 015536 239 IIDET-QLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS-N-IVPA---DLVIPFQPSSAA 312 (405)
Q Consensus 239 viDEt-~l~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS-~-~lp~---d~~vpl~~~~~~ 312 (405)
+|||- .|..+. .+ .+.+|..+++.. +.|+++++.... . +-+. ...+.+
T Consensus 153 iIDEid~l~~~~---~~--~l~~L~~~l~~~---------------~~~iIli~~~~~~~~l~~l~~r~~~i~f------ 206 (516)
T 1sxj_A 153 IMDEVDGMSGGD---RG--GVGQLAQFCRKT---------------STPLILICNERNLPKMRPFDRVCLDIQF------ 206 (516)
T ss_dssp EECSGGGCCTTS---TT--HHHHHHHHHHHC---------------SSCEEEEESCTTSSTTGGGTTTSEEEEC------
T ss_pred EEECCCccchhh---HH--HHHHHHHHHHhc---------------CCCEEEEEcCCCCccchhhHhceEEEEe------
Confidence 99996 566542 22 267788887752 456666665322 0 1111 111111
Q ss_pred CCCCCChhhHHHHHHHHHH-hccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 015536 313 SFEVVPAETLEAWRWYLAS-VRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQ 391 (405)
Q Consensus 313 ~~~~~~~~~l~~~R~Yi~~-ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~ 391 (405)
..++ .+.++.+|.. +......+++++.+.|.+. .+. +.+.+. .+.+.++. +...++.++.+
T Consensus 207 --~~~~---~~~~~~~L~~i~~~~~~~i~~~~l~~la~~------s~G--diR~~i---~~L~~~~~--~~~~It~~~v~ 268 (516)
T 1sxj_A 207 --RRPD---ANSIKSRLMTIAIREKFKLDPNVIDRLIQT------TRG--DIRQVI---NLLSTIST--TTKTINHENIN 268 (516)
T ss_dssp --CCCC---HHHHHHHHHHHHHHHTCCCCTTHHHHHHHH------TTT--CHHHHH---HHHTHHHH--HSSCCCTTHHH
T ss_pred --CCCC---HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH------cCC--cHHHHH---HHHHHHHh--cCCCCchHHHH
Confidence 1222 3444444433 2333566888887766322 222 233333 33333333 55678877776
Q ss_pred HHHH
Q 015536 392 MVKE 395 (405)
Q Consensus 392 ~a~~ 395 (405)
.+..
T Consensus 269 ~~~~ 272 (516)
T 1sxj_A 269 EISK 272 (516)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 50
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.68 E-value=59 Score=32.82 Aligned_cols=188 Identities=13% Similarity=0.151 Sum_probs=98.9
Q ss_pred eeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEec---CCceEEEeCC-CC
Q 015536 170 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLA---DGSHLIIDET-QL 245 (405)
Q Consensus 170 sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa---~gT~lviDEt-~l 245 (405)
-+.|.|+|| +-+..|.+.++.-+-... +.++...+-+ +.-.++.++..-+...| ...++.|||. .+
T Consensus 217 GvLL~GPPG----tGKTllAkAiA~e~~~~~-~~v~~s~l~s-----k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai 286 (437)
T 4b4t_L 217 GVLLYGPPG----TGKTLLAKAVAATIGANF-IFSPASGIVD-----KYIGESARIIREMFAYAKEHEPCIIFMDEVDAI 286 (437)
T ss_dssp EEEEESCTT----SSHHHHHHHHHHHHTCEE-EEEEGGGTCC-----SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSS
T ss_pred eEEEECCCC----CcHHHHHHHHHHHhCCCE-EEEehhhhcc-----ccchHHHHHHHHHHHHHHhcCCceeeeeccccc
Confidence 378999998 778888888887665443 3355555533 21111222223333333 3578999995 44
Q ss_pred CcCc----ccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCCC-----c-cc--CceeeeeccCCCCC
Q 015536 246 ETGT----LNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSN-----I-VP--ADLVIPFQPSSAAS 313 (405)
Q Consensus 246 ~~G~----L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~-----~-lp--~d~~vpl~~~~~~~ 313 (405)
-... -...+. -...+..++.+- | .+.. .+--++|.++.+-. + -| ||..|.+.. ++
T Consensus 287 ~~~R~~~~~~~~~~-~~~~l~~lL~~l----D-g~~~----~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~l-Pd-- 353 (437)
T 4b4t_L 287 GGRRFSEGTSADRE-IQRTLMELLTQM----D-GFDN----LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPL-PN-- 353 (437)
T ss_dssp SCCCSSSCCSSTTH-HHHHHHHHHHHH----H-SSSC----TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCC-CC--
T ss_pred ccccccCCCCcchH-HHHHHHHHHHHh----h-cccC----CCCeEEEEecCCchhhCHHHhCCCccceeeecCC-cC--
Confidence 3211 111111 122233333311 1 1100 11123444444321 1 12 554444421 10
Q ss_pred CCCCChhhHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 015536 314 FEVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMV 393 (405)
Q Consensus 314 ~~~~~~~~l~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a 393 (405)
.+...+.|+.|+...... ..+ +..+ | . +..+ ..|..|+..+.+-|-+.|+..++..++.+|+..|
T Consensus 354 ----~~~R~~Il~~~~~~~~~~-~d~--dl~~-l-----A-~~t~-G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~A 418 (437)
T 4b4t_L 354 ----EAGRLEIFKIHTAKVKKT-GEF--DFEA-A-----V-KMSD-GFNGADIRNCATEAGFFAIRDDRDHINPDDLMKA 418 (437)
T ss_dssp ----HHHHHHHHHHHHHTSCBC-SCC--CHHH-H-----H-HTCC-SCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCCCCC-ccc--CHHH-H-----H-HhCC-CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 223557788777654321 111 1111 1 1 2222 4789999999999999999999999999999998
Q ss_pred HH
Q 015536 394 KE 395 (405)
Q Consensus 394 ~~ 395 (405)
++
T Consensus 419 l~ 420 (437)
T 4b4t_L 419 VR 420 (437)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 51
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=51.63 E-value=92 Score=29.21 Aligned_cols=58 Identities=10% Similarity=0.062 Sum_probs=39.0
Q ss_pred CCCCChhHHHHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 336 PHSIESDMQKVVESDLVAARQAD--R-SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 336 ~~~i~~e~~~~Iq~~fV~~Rq~~--~-~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
...+++++.+.|.+.. .+... . .=..+.+..++..|-.+|...|...++.++...+..
T Consensus 212 ~~~~~~~~~~~l~~~~--~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 212 EGSYSEDILQMIADIT--GAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp TTSSCHHHHHHHHHHH--SBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--hhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 3468888777663322 00000 0 124788888888888888888999999999888754
No 52
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=51.47 E-value=61 Score=30.29 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=39.4
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 336 PHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 336 ~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
...+++++.++|.+.. . .. .=+.+.+..++..+-.+|...|+..++.++++.|++
T Consensus 216 ~~~~~~~~~~~l~~~~-~--~~--~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~ 270 (386)
T 2qby_A 216 PGVLPDNVIKLCAALA-A--RE--HGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKE 270 (386)
T ss_dssp SSCSCHHHHHHHHHHH-H--HT--TCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-H--Hh--cCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 5678888888775522 1 11 124677777888777778888999999999998865
No 53
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.23 E-value=49 Score=33.81 Aligned_cols=187 Identities=12% Similarity=0.146 Sum_probs=96.5
Q ss_pred eeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEec---CCceEEEeCC-CC
Q 015536 170 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLA---DGSHLIIDET-QL 245 (405)
Q Consensus 170 sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa---~gT~lviDEt-~l 245 (405)
-+.|.|+|| +-+..|.++++.-+-.. ++.++...|-+.. -.++.+...-+...| ...++.|||. .+
T Consensus 245 GILLyGPPG----TGKTlLAkAiA~e~~~~-fi~vs~s~L~sk~-----vGesek~ir~lF~~Ar~~aP~IIfiDEiDai 314 (467)
T 4b4t_H 245 GILLYGPPG----TGKTLCARAVANRTDAT-FIRVIGSELVQKY-----VGEGARMVRELFEMARTKKACIIFFDEIDAV 314 (467)
T ss_dssp EEEECSCTT----SSHHHHHHHHHHHHTCE-EEEEEGGGGCCCS-----SSHHHHHHHHHHHHHHHTCSEEEEEECCTTT
T ss_pred ceEeeCCCC----CcHHHHHHHHHhccCCC-eEEEEhHHhhccc-----CCHHHHHHHHHHHHHHhcCCceEeecccccc
Confidence 378999998 67888888888766544 3445655553321 111222222223332 2568999995 44
Q ss_pred CcCccc-ccc-hhH-HHHHHHHHHhCceeeeecccceeeeeccceE-EeecCCCC-c----c---cCceeeeeccCCCCC
Q 015536 246 ETGTLN-STG-VEN-ARLLKNLMEFQKVEYNFEYYKMEMIADVQML-ILSEGKSN-I----V---PADLVIPFQPSSAAS 313 (405)
Q Consensus 246 ~~G~L~-~~G-v~N-~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~l-vLS~gKS~-~----l---p~d~~vpl~~~~~~~ 313 (405)
-...-+ ..| ... ...+..++.+- | . +...-+++ |.++.+-. + + -||..|.+..
T Consensus 315 ~~~R~~~~~~~~~~~~~~l~~lL~~l----D-g-----~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~l----- 379 (467)
T 4b4t_H 315 GGARFDDGAGGDNEVQRTMLELITQL----D-G-----FDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL----- 379 (467)
T ss_dssp SBCCSSSSCGGGGHHHHHHHHHHHHH----H-S-----SCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCC-----
T ss_pred cccccCcCCCccHHHHHHHHHHHHHh----h-c-----cCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCC-----
Confidence 321111 111 111 22233333311 1 1 11122333 33443321 1 1 1444443321
Q ss_pred CCCCC-hhhHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 015536 314 FEVVP-AETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQM 392 (405)
Q Consensus 314 ~~~~~-~~~l~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~ 392 (405)
++ +...+.||.|+.... ....++ . +. +. ++.. ..+..||..+.+-|-+.|+..++..++.+|+..
T Consensus 380 ---Pd~~~R~~Ilk~~l~~~~-l~~dvd--l-~~-----LA-~~T~-GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~ 445 (467)
T 4b4t_H 380 ---PDLEGRANIFRIHSKSMS-VERGIR--W-EL-----IS-RLCP-NSTGAELRSVCTEAGMFAIRARRKVATEKDFLK 445 (467)
T ss_dssp ---CCHHHHHHHHHHHHTTSC-BCSSCC--H-HH-----HH-HHCC-SCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHH
T ss_pred ---cCHHHHHHHHHHHhcCCC-CCCCCC--H-HH-----HH-HHCC-CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 12 234566776653321 111221 1 11 22 2233 478999999999999999999999999999999
Q ss_pred HHH
Q 015536 393 VKE 395 (405)
Q Consensus 393 a~~ 395 (405)
|++
T Consensus 446 Al~ 448 (467)
T 4b4t_H 446 AVD 448 (467)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 54
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=49.56 E-value=66 Score=30.45 Aligned_cols=66 Identities=11% Similarity=0.065 Sum_probs=48.0
Q ss_pred HHHHHHHHHh-ccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 323 EAWRWYLASV-RSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 323 ~~~R~Yi~~a-r~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
+.++.+|... +.....+++++.++|- ++... +.+...++|..++..|...|...+|.++.+.|++.
T Consensus 183 ~~l~~iL~~~~~~~~~~~~~~~~~~ia------~~~~G--~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~ 249 (334)
T 1in4_A 183 KELKEIIKRAASLMDVEIEDAAAEMIA------KRSRG--TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEV 249 (334)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHH------HTSTT--CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHH------HhcCC--ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 3344444332 2356778888877763 23333 57999999999999999999999999999998764
No 55
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=46.76 E-value=69 Score=24.10 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=38.7
Q ss_pred hccCCC-CCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 332 VRSLPH-SIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 332 ar~~~~-~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
+++.+. .+++|+.+.+-++- + .-++.++.=|--+++-.|+++|+.+|.+.|+++
T Consensus 16 aes~Gi~~lsddaa~~LA~dv-E----------yr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 16 AESIGVGSLSDDAAKELAEDV-S----------IKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHHTTCCCBCHHHHHHHHHHH-H----------HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred HHHCCCCCCCHHHHHHHHHHH-H----------HHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 344444 78999988886653 3 334445556666788889999999999999864
No 56
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=45.21 E-value=30 Score=25.65 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 015536 360 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELE 397 (405)
Q Consensus 360 ~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~LE 397 (405)
..|..|+..+.+-|-+.|+..+...++.+|+..|++=-
T Consensus 36 G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 36 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999998643
No 57
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=40.18 E-value=1.2e+02 Score=26.19 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHHHHHHcCC-CCCCHHHHHHHHHH
Q 015536 320 ETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLS-RLLTMGRLMSASFGE-TSLSLEHWQMVKEL 396 (405)
Q Consensus 320 ~~l~~~R~Yi~~ar~~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~-~~L~laRllA~s~g~-~~lt~e~w~~a~~L 396 (405)
.+++-+..|++.-=-.+..+++|+.+..-+ -.. ..+.+||.....+++ .....|+|++|.++
T Consensus 80 iel~pil~~la~~PPld~~~~~e~e~~lP~---------------I~GgL~v~lArv~K~l~pe~rnp~~eh~E~a~~v 143 (148)
T 1wwi_A 80 LELKPVLDALAALPPLDLEVAEDVRNLLPE---------------LAGALVVAYARVLKELDPALKNPQTEHHERAERV 143 (148)
T ss_dssp CCHHHHHHHHHTSCCCSSEECHHHHHHHHH---------------HHHHHHHHHHHHHHHHSTTCSSCCHHHHHHHHHH
T ss_pred cchHHHHHHHHhCCCCCCChhHHHHHHHHH---------------HHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHH
Confidence 467788888886444566777876555422 222 246789999999988 89999999999875
No 58
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=39.08 E-value=50 Score=25.27 Aligned_cols=36 Identities=8% Similarity=0.115 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 360 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 360 ~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
..|..||..+.+-|-+.|+..+...++.+|++.|++
T Consensus 34 G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 34 NSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVD 69 (88)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 478999999999999999999999999999999975
No 59
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=33.18 E-value=59 Score=24.92 Aligned_cols=36 Identities=11% Similarity=0.198 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 360 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 360 ~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
..|..||..+.+=|-+.|+..+...|+.+|++.|++
T Consensus 44 G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~ 79 (86)
T 2krk_A 44 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 79 (86)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 579999999999999999999999999999999875
No 60
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=32.30 E-value=63 Score=24.21 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 360 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 360 ~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
..|..|+..+.+-|-+.|+..+...++.+|+..|++
T Consensus 31 G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~ 66 (82)
T 2dzn_B 31 SLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYA 66 (82)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 478999999999999999999999999999998875
No 61
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=31.23 E-value=3.3e+02 Score=25.42 Aligned_cols=68 Identities=16% Similarity=0.106 Sum_probs=39.6
Q ss_pred eeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEe---cCCceEEEeCC-C
Q 015536 169 LSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQL---ADGSHLIIDET-Q 244 (405)
Q Consensus 169 ~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQL---a~gT~lviDEt-~ 244 (405)
-.+.|.|.|| +-+..|.+.+..-+....++.++...+.+.. -..+.......++. ...++++|||- .
T Consensus 46 ~~iLL~GppG----tGKT~la~ala~~~~~~~~~~i~~~~l~~~~-----~g~~~~~~~~lf~~a~~~~~~vl~iDEid~ 116 (322)
T 1xwi_A 46 RGILLFGPPG----TGKSYLAKAVATEANNSTFFSISSSDLVSKW-----LGESEKLVKNLFQLARENKPSIIFIDEIDS 116 (322)
T ss_dssp SEEEEESSSS----SCHHHHHHHHHHHTTSCEEEEEECCSSCCSS-----CCSCHHHHHHHHHHHHHTSSEEEEEETTTG
T ss_pred ceEEEECCCC----ccHHHHHHHHHHHcCCCcEEEEEhHHHHhhh-----hhHHHHHHHHHHHHHHhcCCcEEEeecHHH
Confidence 3689999998 6788888888877655555555544443211 01111222222222 34578999995 4
Q ss_pred C
Q 015536 245 L 245 (405)
Q Consensus 245 l 245 (405)
|
T Consensus 117 l 117 (322)
T 1xwi_A 117 L 117 (322)
T ss_dssp G
T ss_pred h
Confidence 5
No 62
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=29.48 E-value=2.4e+02 Score=23.32 Aligned_cols=48 Identities=8% Similarity=-0.056 Sum_probs=28.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 335 LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 335 ~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
.+..+++++.+.|.+.. .. +.+.+...+.-+-+. + ..++.++.++++.
T Consensus 177 ~~~~~~~~~~~~l~~~~------~g--~~r~l~~~l~~~~~~----~-~~I~~~~v~~~~~ 224 (226)
T 2chg_A 177 EGVKITEDGLEALIYIS------GG--DFRKAINALQGAAAI----G-EVVDADTIYQITA 224 (226)
T ss_dssp HTCCBCHHHHHHHHHHH------TT--CHHHHHHHHHHHHHT----C-SCBCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHc------CC--CHHHHHHHHHHHHhc----C-ceecHHHHHHHhc
Confidence 35568888777664322 22 345555554433222 2 6899999998875
No 63
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=29.02 E-value=3.2e+02 Score=24.58 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=19.1
Q ss_pred cCCceEEEeCC-CCCcCcccccchhHHHHHHHHHHh
Q 015536 233 ADGSHLIIDET-QLETGTLNSTGVENARLLKNLMEF 267 (405)
Q Consensus 233 a~gT~lviDEt-~l~~G~L~~~Gv~N~~aL~~li~~ 267 (405)
+++.+++|||- .|... -..+|..+++.
T Consensus 109 ~~~~vliiDe~~~l~~~--------~~~~L~~~le~ 136 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD--------AQQALRRTMEM 136 (327)
T ss_dssp CSCEEEEEETGGGSCHH--------HHHHHHHHHHH
T ss_pred CCCeEEEEeCCCcCCHH--------HHHHHHHHHHh
Confidence 46789999996 45432 36778888875
No 64
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=27.91 E-value=59 Score=24.23 Aligned_cols=36 Identities=6% Similarity=0.183 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 360 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 360 ~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
..|.-|+..+.+=|-+.|+..+...++.+|+..|++
T Consensus 34 G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~ 69 (83)
T 3aji_B 34 KISGADINSICQESGMLAVRENRYIVLAKDFEKAYK 69 (83)
T ss_dssp CCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 588999999999999999999999999999999875
No 65
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=27.42 E-value=2.1e+02 Score=21.84 Aligned_cols=46 Identities=13% Similarity=0.326 Sum_probs=33.8
Q ss_pred CCCCChhHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 336 PHSIESDMQKV---VESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 336 ~~~i~~e~~~~---Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
...+++++.+. |.|+||+. ....|.-+|+-+|.+++..-|.+..++
T Consensus 21 ~~~ld~~vee~ll~lADdFV~~--------------V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 21 NEQLDEDVEEMLLQIADDFIES--------------VVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 45788887775 67888772 455667788899999998888765543
No 66
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=26.53 E-value=1e+02 Score=23.63 Aligned_cols=52 Identities=8% Similarity=-0.045 Sum_probs=38.0
Q ss_pred ccCC-CCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 333 RSLP-HSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 333 r~~~-~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
|+.. ..|++++.+.+++.. ..-++..+.=|-.+|.-.|+.+++.+|+..|++
T Consensus 21 r~~Gv~rIs~da~~~l~~~l-----------~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk 73 (84)
T 2hue_C 21 RRGGVKRISGLIYEETRGVL-----------KVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 73 (84)
T ss_dssp HHTTCCEECTTHHHHHHHHH-----------HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHcCchhccHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHH
Confidence 4444 468888887776654 244555777777788889999999999998865
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=25.24 E-value=2.2e+02 Score=30.04 Aligned_cols=25 Identities=16% Similarity=-0.101 Sum_probs=16.9
Q ss_pred ceeeEeecCCCCccchhHHHHHHHHHhhc
Q 015536 168 KLSLNLTCLSKESVSVFGNQVRLSVQNLL 196 (405)
Q Consensus 168 ~~sLnl~~~p~~~~~~~~~~L~~~l~~l~ 196 (405)
+-++-|+|.|| +-+..+.+.+...+
T Consensus 207 ~~~vlL~G~~G----tGKT~la~~la~~l 231 (758)
T 1r6b_X 207 KNNPLLVGESG----VGKTAIAEGLAWRI 231 (758)
T ss_dssp SCEEEEECCTT----SSHHHHHHHHHHHH
T ss_pred CCCeEEEcCCC----CCHHHHHHHHHHHH
Confidence 34678999998 55666666665543
No 68
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=25.19 E-value=66 Score=26.47 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=21.6
Q ss_pred HHHHHHH-HHcCCCCCCHHHHHHHHHH
Q 015536 371 TMGRLMS-ASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 371 ~laRllA-~s~g~~~lt~e~w~~a~~L 396 (405)
-+|+.+| ...|=.++|.+||+.+.-|
T Consensus 33 evA~~lA~~~egI~eLTe~HW~VI~fl 59 (111)
T 1ji8_A 33 KVAEWLARELEGIQKMTEEHWKLVKYL 59 (111)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchhcCHHHHHHHHHH
Confidence 3678899 8889888999999987654
No 69
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=24.59 E-value=1.5e+02 Score=23.63 Aligned_cols=59 Identities=10% Similarity=-0.028 Sum_probs=42.1
Q ss_pred HHHHHHHHHhccCC-CCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 323 EAWRWYLASVRSLP-HSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 323 ~~~R~Yi~~ar~~~-~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
..++... |... ..|++++.+.+.+.. ..-++..+..|-.+|.-.++.+++.+|+..|++
T Consensus 33 ~~I~Rla---r~~G~~rIs~~a~~~l~~vl-----------e~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr 92 (103)
T 1tzy_D 33 PAIRRLA---RRGGVKRISGLIYEETRGVL-----------KVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 92 (103)
T ss_dssp HHHHHHH---HHTTCCEECTTHHHHHHHHH-----------HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHH---HHcCccccCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 4555543 3333 368888877776543 244555778888889999999999999998876
No 70
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=24.23 E-value=80 Score=27.90 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 369 LLTMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 369 ~L~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
.+.+||.....+++.....|+|++|.++
T Consensus 139 ~valARv~K~l~Pernp~~ehwE~a~~v 166 (171)
T 1r4v_A 139 LLMHADVIKKATGERKPSREAMEFVAQI 166 (171)
T ss_dssp HHHHHHHHHHHCCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 4678999999999999999999999875
No 71
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=24.17 E-value=1.5e+02 Score=23.58 Aligned_cols=59 Identities=12% Similarity=-0.010 Sum_probs=41.6
Q ss_pred HHHHHHHHHhccCC-CCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 323 EAWRWYLASVRSLP-HSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 323 ~~~R~Yi~~ar~~~-~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
..++... |... ..|++++.+.+.+.. ..-++..+..|-.+|.-.++.+++.+|+..|++
T Consensus 33 ~~I~Rla---r~~G~~rIs~~a~~~l~~vl-----------e~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr 92 (103)
T 2yfw_B 33 PAIRRLA---RRGGVKRISGLIYEEVRNVL-----------KTFLESVIRDAVTYTEHAKRKTVTSLDVVYALK 92 (103)
T ss_dssp HHHHHHH---HHTTCCEECTTHHHHHHHHH-----------HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHH---HHcCccccCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHH
Confidence 3455543 3333 368888777775543 244555778888889999999999999998876
No 72
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=23.35 E-value=53 Score=26.72 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015536 371 TMGRLMSASFGETSLSLEHWQMVKEL 396 (405)
Q Consensus 371 ~laRllA~s~g~~~lt~e~w~~a~~L 396 (405)
-+|+.+|...|=.++|.++|+.+.-|
T Consensus 28 e~A~~lA~~egI~eLTe~HW~vI~fl 53 (105)
T 3or1_C 28 EWVKYAKGSEGIGAGSADHQKIIDFL 53 (105)
T ss_dssp HHHHHHGGGGTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccCCHHHHHHHHHH
Confidence 36788999999889999999987665
No 73
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=23.27 E-value=1.6e+02 Score=23.46 Aligned_cols=48 Identities=8% Similarity=-0.014 Sum_probs=35.9
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 337 HSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 337 ~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
..|++++.+.+++.. ..-++..+.=|-.+|.-.++.+|+.+|+..|++
T Consensus 44 ~rIS~da~~~l~~~l-----------e~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALk 91 (102)
T 1id3_B 44 KRISGLIYEEVRAVL-----------KSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 91 (102)
T ss_dssp CEECTTHHHHHHHHH-----------HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhccHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHH
Confidence 458888777775543 234555667777788888999999999998876
No 74
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=23.13 E-value=21 Score=25.23 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=12.7
Q ss_pred HHHHHHHcCCCCCCHH--HHHHHHHH
Q 015536 373 GRLMSASFGETSLSLE--HWQMVKEL 396 (405)
Q Consensus 373 aRllA~s~g~~~lt~e--~w~~a~~L 396 (405)
.|++|+|+-+..+..| +..+|++|
T Consensus 11 qrALalSRQE~dmEDeeadLrrAiqL 36 (52)
T 2klz_A 11 QRALALSRQEIDMEDEEADLRRAIQL 36 (52)
T ss_dssp HHHHHHHHHHHCCSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHH
Confidence 3555555555555555 55555554
No 75
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=22.06 E-value=1.4e+02 Score=23.63 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhh
Q 015536 348 ESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRER 403 (405)
Q Consensus 348 q~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~LE~~R~~R 403 (405)
|+.||+.||=..+++-+.+..+|..-..-++- +-+..|--.+-+|-.+|.-|+.|
T Consensus 6 qeEFveLrkfKgkvd~~~v~~IL~eiE~~~rk-snni~tS~If~Yanh~~~V~knk 60 (99)
T 2kjg_A 6 DPEFVKLRQFKGKVNFNLVMQILDEIELDLRG-SDNIKTSIIYVYSSHLDEIRKNK 60 (99)
T ss_dssp CHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHH-SSCHHHHHHHHHHHTHHHHHHTH
T ss_pred hHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHHHHhhH
Confidence 56777777777677777777666655544332 23344444566666666666554
No 76
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=21.81 E-value=2.5e+02 Score=20.85 Aligned_cols=49 Identities=14% Similarity=0.042 Sum_probs=36.7
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015536 336 PHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 395 (405)
Q Consensus 336 ~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~ 395 (405)
+..|+.++...|++.. .+=++.+-.-|.-+|.-.|+.+++.+|...|++
T Consensus 20 ~~~is~~A~~~i~~~~-----------~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 20 HLRLAANTDLLVHLSF-----------LLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp TCEECTTHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4567888877776544 234556666677788889999999999999887
No 77
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=21.53 E-value=3.5e+02 Score=22.47 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=30.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 015536 335 LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVK 394 (405)
Q Consensus 335 ~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~ 394 (405)
....+++++.+.|.+ ..+. +.+.+..++.-+ ..+++..+|.++.+.++
T Consensus 201 ~~~~~~~~~~~~l~~------~~~G--~~~~~~~~~~~~----~~~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 201 EHIAHEPRALQLLAR------AAEG--SLRDALSLTDQA----IASGDGQVSTQAVSAML 248 (250)
T ss_dssp TTCCBCHHHHHHHHH------HHTT--CHHHHHHHHHHH----HTTTTSSBCHHHHHHHS
T ss_pred cCCCCCHHHHHHHHH------HcCC--CHHHHHHHHHHH----HhccCceecHHHHHHHh
Confidence 456778877665532 2232 466666666533 34566789999998875
No 78
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=20.70 E-value=1.5e+02 Score=26.74 Aligned_cols=22 Identities=5% Similarity=-0.081 Sum_probs=15.0
Q ss_pred eeEeecCCCCccchhHHHHHHHHHhh
Q 015536 170 SLNLTCLSKESVSVFGNQVRLSVQNL 195 (405)
Q Consensus 170 sLnl~~~p~~~~~~~~~~L~~~l~~l 195 (405)
++.|.|.|| +-++.+.+.+..-
T Consensus 40 ~~ll~G~~G----~GKt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPG----TGKTATAIALARD 61 (319)
T ss_dssp CEEEESSSS----SSHHHHHHHHHHH
T ss_pred eEEEECcCC----cCHHHHHHHHHHH
Confidence 489999998 4566666555443
Done!