BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015537
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 613 bits (1582), Expect = e-176, Method: Compositional matrix adjust.
Identities = 294/368 (79%), Positives = 330/368 (89%), Gaps = 1/368 (0%)
Query: 1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
MSLRP+ + + RRN+YKVAVDA+EGRRRREDNMVEIRK++REESL KKRREGLQ Q P+
Sbjct: 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62
Query: 61 NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
A G KKLE+LP M+ GV+S+D+ +Q E TTQFRKLLSIERSPPIEEVI+SGVVPR
Sbjct: 63 ASA-ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 121
Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
FV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL S SDDVREQAV
Sbjct: 122 FVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAV 181
Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
WALGN+AGDSP+CRDLVL+ G L+PLLAQLN KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 182 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 241
Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 301
Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
VLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N KKSIKKEACWT+SNITAGN+
Sbjct: 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK 361
Query: 361 EQIQVIMH 368
+QIQ +++
Sbjct: 362 DQIQAVIN 369
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 26/248 (10%)
Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
L+ + ++ +A WAL+ ++ GT++ + VI+ G P V+LL PS V A+ +G
Sbjct: 252 LIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311
Query: 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
NI ++ L LL+ L K S+ + A WT+SN G DQ+
Sbjct: 312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK----DQIQAV 367
Query: 245 LPA-----LAHLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
+ A L +L+ + + ++ +A WA+S S G++D+I+ ++ G L + L+ P
Sbjct: 368 INAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPD 427
Query: 299 PSVLIPALRTVGNIV----------TGD-DMQTQCVIEYQALPCLLNLLSGN----YKKS 343
++ L + NI+ GD ++ +Q + E + L + NL S + Y+K+
Sbjct: 428 IRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKA 487
Query: 344 IK-KEACW 350
+K EA W
Sbjct: 488 VKILEAYW 495
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP 171
+I +P + L + ++ EA W ++NI +G + + VI+ G + V LL +
Sbjct: 324 IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA 383
Query: 172 SDDVREQAVWALGN-IAGDSPRCRDLVLSQGGLVPL 206
D++++A WA+ N +G S ++S+G + PL
Sbjct: 384 EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 419
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIV 376
VI+ +P + L+ ++ EA W ++NI +G E +V++ A I V
Sbjct: 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 517 bits (1331), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/328 (75%), Positives = 283/328 (86%), Gaps = 1/328 (0%)
Query: 41 REESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKL 100
+E + K R+ + + L D + A +LP M+ GV+S+D+ +Q E TTQFRKL
Sbjct: 5 KETAAAKFERQHMDSPD-LGTDDDDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKL 63
Query: 101 LSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA 160
LSIERSPPIEEVI+SGVVPRFV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGA
Sbjct: 64 LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 123
Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR 220
VPIFVKLL S SDDVREQAVWALGN+AGDSP+CRDLVL+ G L+PLLAQLN KLSMLR
Sbjct: 124 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 183
Query: 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA 280
NATWTLSNFCRGKPQP F+Q PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQA
Sbjct: 184 NATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQA 243
Query: 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY 340
VIEAGV PRL E L+HPSPSVLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N
Sbjct: 244 VIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL 303
Query: 341 KKSIKKEACWTVSNITAGNREQIQVIMH 368
KKSIKKEACWT+SNITAGN++QIQ +++
Sbjct: 304 KKSIKKEACWTISNITAGNKDQIQAVIN 331
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 26/248 (10%)
Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
L+ + ++ +A WAL+ ++ GT++ + VI+ G P V+LL PS V A+ +G
Sbjct: 214 LIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 273
Query: 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
NI ++ L LL+ L K S+ + A WT+SN G DQ+
Sbjct: 274 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK----DQIQAV 329
Query: 245 LPA-----LAHLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
+ A L +L+ + + ++ +A WA+S S G++D+I+ ++ G L + L+ P
Sbjct: 330 INAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPD 389
Query: 299 PSVLIPALRTVGNIV----------TGD-DMQTQCVIEYQALPCLLNLLSGN----YKKS 343
++ L + NI+ GD ++ +Q + E + L + NL S + Y+K+
Sbjct: 390 IRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKA 449
Query: 344 IK-KEACW 350
+K EA W
Sbjct: 450 VKILEAYW 457
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 44/175 (25%)
Query: 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR------- 127
LP + + SND V + LS + I+ VI +GV PR VE LL
Sbjct: 208 LPALARLIHSNDEEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLI 266
Query: 128 -----------EDYPQLQF------------------------EAAWALTNIASGTSEHT 152
D Q Q EA W ++NI +G +
Sbjct: 267 PALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQI 326
Query: 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN-IAGDSPRCRDLVLSQGGLVPL 206
+ VI+ G + V LL + D++++A WA+ N +G S ++S+G + PL
Sbjct: 327 QAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 381
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIV 376
VI+ +P + L+ ++ EA W ++NI +G E +V++ A I V
Sbjct: 75 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 128
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 348 bits (894), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 196/375 (52%), Positives = 253/375 (67%), Gaps = 14/375 (3%)
Query: 5 PNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRR-----EGLQNQQPL 59
P + + +NK + + ADE RRRR+ VE+RK KR+E+L K+R +G + +
Sbjct: 14 PEYRRTNFKNKGRFS--ADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEED 71
Query: 60 ANDVNAPGT--AKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV 117
+ V+A ++ + LP M + S+D Q T +FR++LS E PPI+ VI++GV
Sbjct: 72 ESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGV 131
Query: 118 VPRFVEFLLREDYPQ-LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
VPR VEF+ RE+ P+ LQ EAAWALTNIASGTS TKVV+D AVP+F++LLY+ S +V+
Sbjct: 132 VPRLVEFM-RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 190
Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQ 235
EQA+WALGN+AGDS RD VL + P+L N K S++R ATWTLSN CRG KPQ
Sbjct: 191 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQ 249
Query: 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295
P + VS ALP LA LI+S D E L DACWA+SYLSDG + IQAVI+ + RL E L
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309
Query: 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
H S V PALR VGNIVTG+D+QTQ VI LP L LLS + K++IKKEACWT+SNI
Sbjct: 310 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNI 368
Query: 356 TAGNREQIQVIMHVH 370
TAGN EQIQ ++ +
Sbjct: 369 TAGNTEQIQAVIDAN 383
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
I+ VI + R VE LL + +Q A A+ NI +G T+VVI+ G +P LL
Sbjct: 292 IQAVIDVRIPKRLVE-LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL 350
Query: 169 YSPSDDVREQAVWALGNI-AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
SP ++++++A W + NI AG++ + + ++ L+P L +L + + A W +S
Sbjct: 351 SSPKENIKKEACWTISNITAGNTEQIQAVI--DANLIPPLVKLLEVAEYKTKKEACWAIS 408
Query: 228 NFCRGKPQPP 237
N G Q P
Sbjct: 409 NASSGGLQRP 418
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP 171
VI +GV+P LL ++ EA W ++NI +G +E + VID +P VKLL
Sbjct: 337 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 395
Query: 172 SDDVREQAVWALGNIAGDSPRCRDLV---LSQGGLVPL 206
+++A WA+ N + + D++ +SQG + PL
Sbjct: 396 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 433
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 326 bits (836), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 182/374 (48%), Positives = 241/374 (64%), Gaps = 18/374 (4%)
Query: 5 PNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL---QNQQPLAN 61
P ++ + +NK K D+ E RRRR + VE+RK K++E + K+R PL
Sbjct: 10 PAARLNRFKNKGK---DSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQE 66
Query: 62 DVNAPGTAK-KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
+ N GT +E++ V G+ SN+ Q + T RKLLS E+ PPI+ +IR+G++P+
Sbjct: 67 NRNNQGTVNWSVEDI---VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPK 123
Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
FV FL + D +QFE+AWALTNIASGTSE TK V+D GA+P F+ LL SP + EQAV
Sbjct: 124 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAV 183
Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-P 234
WALGNIAG RDLV+ G + PLLA L P LS LRN TWTLSN CR K P
Sbjct: 184 WALGNIAGAGSAFRDLVIKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNP 242
Query: 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
PP D V LP L L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L
Sbjct: 243 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 302
Query: 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354
++ PALR +GNIVTG D QTQ VI+ AL +LL+ N K +I+KEA WT+SN
Sbjct: 303 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSN 361
Query: 355 ITAGNREQIQVIMH 368
ITAG ++QIQ +++
Sbjct: 362 ITAGRQDQIQQVVN 375
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
++VI +G + F LL +Q EA W ++NI +G + + V++HG VP V +L
Sbjct: 329 QKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 387
Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQ 213
++ A WA+ N + + L G++ PL+ L+ +
Sbjct: 388 KADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 432
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
+ +Q E T + + R I++V+ G+VP V L + D+ + Q AAWA+TN S
Sbjct: 349 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKAAAWAITNYTS 406
Query: 147 -GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI------AGDSPRCRDLVLS 199
GT E ++ G + + LL + + + + A+ NI G++ + ++
Sbjct: 407 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 466
Query: 200 QGGL 203
GGL
Sbjct: 467 CGGL 470
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 323 bits (829), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 173/300 (57%), Positives = 213/300 (71%), Gaps = 5/300 (1%)
Query: 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
+ LP M + S+D Q T +FR++LS E PPI+ VI++GVVPR VEF+ RE+ P+
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPE 59
Query: 133 -LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191
LQ EAAWALTNIASGTS TKVV+D AVP+F++LLY+ S +V+EQA+WALGN+AGDS
Sbjct: 60 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAH 250
RD VL + P+L N K S++R ATWTLSN CRG KPQP + VS ALP LA
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
LI+S D E L DACWA+SYLSDG + IQAVI+ + RL E L H S V PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370
NIVTG+D+QTQ VI LP L LLS + K++IKKEACWT+SNITAGN EQIQ ++ +
Sbjct: 239 NIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDAN 297
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
I+ VI + R VE LL + +Q A A+ NI +G T+VVI+ G +P LL
Sbjct: 206 IQAVIDVRIPKRLVE-LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL 264
Query: 169 YSPSDDVREQAVWALGNI-AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
SP ++++++A W + NI AG++ + + ++ L+P L +L + + A W +S
Sbjct: 265 SSPKENIKKEACWTISNITAGNTEQIQAVI--DANLIPPLVKLLEVAEDKTKKEACWAIS 322
Query: 228 NFCRGKPQPP 237
N G Q P
Sbjct: 323 NASSGGLQRP 332
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP 171
VI +GV+P LL ++ EA W ++NI +G +E + VID +P VKLL
Sbjct: 251 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 309
Query: 172 SDDVREQAVWALGNIAGDSPRCRDLV---LSQGGLVPL 206
D +++A WA+ N + + D++ +SQG + PL
Sbjct: 310 EDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 347
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 323 bits (829), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 173/300 (57%), Positives = 212/300 (70%), Gaps = 5/300 (1%)
Query: 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
+ LP M + S+D Q T +FR++LS E PPI+ VI++GVVPR VEF+ RE+ P+
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPE 59
Query: 133 -LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191
LQ EAAWALTNIASGTS TKVV+D AVP+F++LLY+ S +V+EQA+WALGN+AGDS
Sbjct: 60 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAH 250
RD VL + P+L N K S++R ATWTLSN CRG KPQP + VS ALP LA
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
LI+S D E L DACWA+SYLSDG + IQAVI+ + RL E L H S V PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370
NIVTG+D+QTQ VI LP L LLS K++IKKEACWT+SNITAGN EQIQ ++ +
Sbjct: 239 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDAN 297
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
I+ VI + R VE LL + +Q A A+ NI +G T+VVI+ G +P LL
Sbjct: 206 IQAVIDVRIPKRLVE-LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL 264
Query: 169 YSPSDDVREQAVWALGNI-AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
SP ++++++A W + NI AG++ + + ++ L+P L +L + + A W +S
Sbjct: 265 SSPKENIKKEACWTISNITAGNTEQIQAVI--DANLIPPLVKLLEVAEDKTKKEACWAIS 322
Query: 228 NFCRGKPQPP 237
N G Q P
Sbjct: 323 NASSGGLQRP 332
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP 171
VI +GV+P LL ++ EA W ++NI +G +E + VID +P VKLL
Sbjct: 251 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 309
Query: 172 SDDVREQAVWALGNIAGDSPRCRDLV---LSQGGLVPL 206
D +++A WA+ N + + D++ +SQG + PL
Sbjct: 310 EDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 347
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 323 bits (829), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 173/298 (58%), Positives = 212/298 (71%), Gaps = 5/298 (1%)
Query: 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
LP M + S+D Q T +FR++LS E PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
Q EAAWALTNIASGTS TKVV+D AVP+F++LLY+ S +V+EQA+WALGN+AGDS
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
RD VL + P+L N K S++R ATWTLSN CRG KPQP + VS ALP LA LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
+S D E L DACWA+SYLSDG + IQAVI+ + RL E L H S V PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370
VTG+D+QTQ VI LP L LLS + K++IKKEACWT+SNITAGN EQIQ ++ +
Sbjct: 240 VTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDAN 296
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
I+ VI + R VE LL + +Q A A+ NI +G T+VVI+ G +P LL
Sbjct: 205 IQAVIDVRIPKRLVE-LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL 263
Query: 169 YSPSDDVREQAVWALGNI-AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
SP ++++++A W + NI AG++ + + ++ L+P L +L + + A W +S
Sbjct: 264 SSPKENIKKEACWTISNITAGNTEQIQAVI--DANLIPPLVKLLEVAEDKTKKEACWAIS 321
Query: 228 NFCRGKPQPP 237
N G Q P
Sbjct: 322 NASSGGLQRP 331
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP 171
VI +GV+P LL ++ EA W ++NI +G +E + VID +P VKLL
Sbjct: 250 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 308
Query: 172 SDDVREQAVWALGNIAGDSPRCRDLV---LSQGGLVPL 206
D +++A WA+ N + + D++ +SQG + PL
Sbjct: 309 EDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 346
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 323 bits (829), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 176/302 (58%), Positives = 214/302 (70%), Gaps = 3/302 (0%)
Query: 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFE 136
M+ ++S Q T +FRKLLS E +PPI+EVI + GVV RFVEFL R++ LQFE
Sbjct: 22 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196
+AW LTNIASG S T++VI GAVPIF++LL S +DV+EQAVWALGNIAGDS CRD
Sbjct: 82 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN 255
VL L PLL + Q +L+M RNA W LSN CRGK PP F +VSP L L+ L+ +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315
D +VL DACWALSYLSDG NDKIQAVI+AGV RL E LMH V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSII 375
DD+QTQ ++ AL L L + K+SIKKEACWT+SNITAGNR QIQ ++ + F +
Sbjct: 262 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 376 VA 377
++
Sbjct: 321 IS 322
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 323 bits (829), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 176/302 (58%), Positives = 214/302 (70%), Gaps = 3/302 (0%)
Query: 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFE 136
M+ ++S Q T +FRKLLS E +PPI+EVI + GVV RFVEFL R++ LQFE
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196
+AW LTNIASG S T++VI GAVPIF++LL S +DV+EQAVWALGNIAGDS CRD
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN 255
VL L PLL + Q +L+M RNA W LSN CRGK PP F +VSP L L+ L+ +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315
D +VL DACWALSYLSDG NDKIQAVI+AGV RL E LMH V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSII 375
DD+QTQ ++ AL L L + K+SIKKEACWT+SNITAGNR QIQ ++ + F +
Sbjct: 265 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 376 VA 377
++
Sbjct: 324 IS 325
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 323 bits (829), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 173/298 (58%), Positives = 211/298 (70%), Gaps = 5/298 (1%)
Query: 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
LP M + S+D Q T +FR++LS E PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
Q EAAWALTNIASGTS TKVV+D AVP+F++LLY+ S +V+EQA+WALGN+AGDS
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
RD VL + P+L N K S++R ATWTLSN CRG KPQP + VS ALP LA LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
+S D E L DACWA+SYLSDG + IQAVI+ + RL E L H S V PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370
VTG+D+QTQ VI LP L LLS K++IKKEACWT+SNITAGN EQIQ ++ +
Sbjct: 239 VTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDAN 295
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
I+ VI + R VE LL + +Q A A+ NI +G T+VVI+ G +P LL
Sbjct: 204 IQAVIDVRIPKRLVE-LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL 262
Query: 169 YSPSDDVREQAVWALGNI-AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
SP ++++++A W + NI AG++ + + ++ L+P L +L + + A W +S
Sbjct: 263 SSPKENIKKEACWTISNITAGNTEQIQAVI--DANLIPPLVKLLEVAEYKTKKEACWAIS 320
Query: 228 NFCRGKPQPP 237
N G Q P
Sbjct: 321 NASSGGLQRP 330
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP 171
VI +GV+P LL ++ EA W ++NI +G +E + VID +P VKLL
Sbjct: 249 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 307
Query: 172 SDDVREQAVWALGNIAGDSPRCRDLV---LSQGGLVPL 206
+++A WA+ N + + D++ +SQG + PL
Sbjct: 308 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 345
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 323 bits (828), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 173/298 (58%), Positives = 212/298 (71%), Gaps = 5/298 (1%)
Query: 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
LP M + S+D Q T +FR++LS E PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
Q EAAWALTNIASGTS TKVV+D AVP+F++LLY+ S +V+EQA+WALGN+AGDS
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
RD VL + P+L N K S++R ATWTLSN CRG KPQP + VS ALP LA LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
+S D E L DACWA+SYLSDG + IQAVI+ + RL E L H S V PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370
VTG+D+QTQ VI LP L LLS + K++IKKEACWT+SNITAGN EQIQ ++ +
Sbjct: 240 VTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDAN 296
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
I+ VI + R VE LL + +Q A A+ NI +G T+VVI+ G +P LL
Sbjct: 205 IQAVIDVRIPKRLVE-LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL 263
Query: 169 YSPSDDVREQAVWALGNI-AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
SP ++++++A W + NI AG++ + + ++ L+P L +L + + A W +S
Sbjct: 264 SSPKENIKKEACWTISNITAGNTEQIQAVI--DANLIPPLVKLLEVAEDKTKKEACWAIS 321
Query: 228 NFCRGKPQPP 237
N G Q P
Sbjct: 322 NASSGGLQRP 331
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP 171
VI +GV+P LL ++ EA W ++NI +G +E + VID +P VKLL
Sbjct: 250 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 308
Query: 172 SDDVREQAVWALGNIAGDSPRCRDLV---LSQGGLVPL 206
D +++A WA+ N + + D++ +SQG + PL
Sbjct: 309 EDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 346
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 323 bits (828), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 173/298 (58%), Positives = 211/298 (70%), Gaps = 5/298 (1%)
Query: 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
LP M + S+D Q T +FR++LS E PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
Q EAAWALTNIASGTS TKVV+D AVP+F++LLY+ S +V+EQA+WALGN+AGDS
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
RD VL + P+L N K S++R ATWTLSN CRG KPQP + VS ALP LA LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
+S D E L DACWA+SYLSDG + IQAVI+ + RL E L H S V PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370
VTG+D+QTQ VI LP L LLS K++IKKEACWT+SNITAGN EQIQ ++ +
Sbjct: 239 VTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDAN 295
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
I+ VI + R VE LL + +Q A A+ NI +G T+VVI+ G +P LL
Sbjct: 204 IQAVIDVRIPKRLVE-LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL 262
Query: 169 YSPSDDVREQAVWALGNI-AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
SP ++++++A W + NI AG++ + + ++ L+P L +L + + A W +S
Sbjct: 263 SSPKENIKKEACWTISNITAGNTEQIQAVI--DANLIPPLVKLLEVAEYKTKKEACWAIS 320
Query: 228 NFCRGKPQPP 237
N G Q P
Sbjct: 321 NASSGGLQRP 330
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP 171
VI +GV+P LL ++ EA W ++NI +G +E + VID +P VKLL
Sbjct: 249 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 307
Query: 172 SDDVREQAVWALGNIAGDSPRCRDLV---LSQGGLVPL 206
+++A WA+ N + + D++ +SQG + PL
Sbjct: 308 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 345
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 308 bits (788), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 165/318 (51%), Positives = 213/318 (66%), Gaps = 12/318 (3%)
Query: 58 PLANDVNAPGTAK-KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG 116
PL + N GT +E++ V G+ SN+ Q + T RKLLS E+ PPI+ +IR+G
Sbjct: 20 PLQENRNNQGTVNWSVEDI---VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 76
Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
++P+FV FL + D +QFE+AWALTNIASGTSE TK V+D GA+P F+ LL SP +
Sbjct: 77 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 136
Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCR 231
EQAVWALGNIAGD RDLV+ G + PLLA L P LS LRN TWTLSN CR
Sbjct: 137 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCR 195
Query: 232 GK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290
K P PP D V LP L L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L
Sbjct: 196 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 255
Query: 291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACW 350
+ L ++ PALR +GNIVTG D QTQ VI+ AL +LL+ N K +I+KEA W
Sbjct: 256 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATW 314
Query: 351 TVSNITAGNREQIQVIMH 368
T+SNITAG ++QIQ +++
Sbjct: 315 TMSNITAGRQDQIQQVVN 332
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
++VI +G + F LL +Q EA W ++NI +G + + V++HG VP V +L
Sbjct: 286 QKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 344
Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQ 213
+++A WA+ N + + L G++ PL+ L+ +
Sbjct: 345 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 389
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
+ +Q E T + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 306 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 363
Query: 147 -GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI------AGDSPRCRDLVLS 199
GT E ++ G + + LL + + + + A+ NI G++ + ++
Sbjct: 364 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 423
Query: 200 QGGL 203
GGL
Sbjct: 424 CGGL 427
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 307 bits (787), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
+V G+ SN+ Q + T RKLLS E+ PPI+ +IR+G++P+FV FL + D +QFE+
Sbjct: 48 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
AWALTNIASGTSE TK V+D GA+P F+ LL SP + EQAVWALGNIAGD RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
+ G + PLLA L P LS LRN TWTLSN CR K P PP D V LP L L
Sbjct: 168 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 226
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L ++ PALR +GN
Sbjct: 227 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 286
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
IVTG D QTQ VI+ AL +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 287 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 342
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
++VI +G + F LL +Q EA W ++NI +G + + V++HG VP V +L
Sbjct: 296 QKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 354
Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQ 213
+++A WA+ N + + L G++ PL+ L+ +
Sbjct: 355 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 399
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
+ +Q E T + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 316 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 373
Query: 147 -GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI------AGDSPRCRDLVLS 199
GT E ++ G + + LL + + + + A+ NI G++ + ++
Sbjct: 374 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 433
Query: 200 QGGL 203
GGL
Sbjct: 434 CGGL 437
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 307 bits (787), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
+V G+ SN+ Q + T RKLLS E+ PPI+ +IR+G++P+FV FL + D +QFE+
Sbjct: 46 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
AWALTNIASGTSE TK V+D GA+P F+ LL SP + EQAVWALGNIAGD RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
+ G + PLLA L P LS LRN TWTLSN CR K P PP D V LP L L
Sbjct: 166 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 224
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L ++ PALR +GN
Sbjct: 225 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 284
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
IVTG D QTQ VI+ AL +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 285 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 340
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
++VI +G + F LL +Q EA W ++NI +G + + V++HG VP V +L
Sbjct: 294 QKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 352
Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQ 213
+++A WA+ N + + L G++ PL+ L+ +
Sbjct: 353 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 397
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
+ +Q E T + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 314 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 371
Query: 147 -GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI------AGDSPRCRDLVLS 199
GT E ++ G + + LL + + + + A+ NI G++ + ++
Sbjct: 372 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 431
Query: 200 QGGL 203
GGL
Sbjct: 432 CGGL 435
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 307 bits (787), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
+V G+ SN+ Q + T RKLLS E+ PPI+ +IR+G++P+FV FL + D +QFE+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
AWALTNIASGTSE TK V+D GA+P F+ LL SP + EQAVWALGNIAGD RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
+ G + PLLA L P LS LRN TWTLSN CR K P PP D V LP L L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
IVTG D QTQ VI+ AL +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
++VI +G + F LL +Q EA W ++NI +G + + V++HG VP V +L
Sbjct: 260 QKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 318
Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQ 213
+++A WA+ N + + L G++ PL+ L+ +
Sbjct: 319 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 363
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
+ +Q E T + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 280 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 337
Query: 147 -GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI------AGDSPRCRDLVLS 199
GT E ++ G + + LL + + + + A+ NI G++ + ++
Sbjct: 338 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 397
Query: 200 QGGL 203
GGL
Sbjct: 398 CGGL 401
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 307 bits (787), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
+V G+ SN+ Q + T RKLLS E+ PPI+ +IR+G++P+FV FL + D +QFE+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
AWALTNIASGTSE TK V+D GA+P F+ LL SP + EQAVWALGNIAGD RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
+ G + PLLA L P LS LRN TWTLSN CR K P PP D V LP L L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
IVTG D QTQ VI+ AL +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
++VI +G + F LL +Q EA W ++NI +G + + V++HG VP V +L
Sbjct: 310 QKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 368
Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQ 213
+++A WA+ N + + L G++ PL+ L+ +
Sbjct: 369 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 413
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
+ +Q E T + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 330 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 387
Query: 147 -GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI------AGDSPRCRDLVLS 199
GT E ++ G + + LL + + + + A+ NI G++ + ++
Sbjct: 388 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 447
Query: 200 QGGL 203
GGL
Sbjct: 448 CGGL 451
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 307 bits (786), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
+V G+ SN+ Q + T RKLLS E+ PPI+ +IR+G++P+FV FL + D +QFE+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
AWALTNIASGTSE TK V+D GA+P F+ LL SP + EQAVWALGNIAGD RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
+ G + PLLA L P LS LRN TWTLSN CR K P PP D V LP L L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
IVTG D QTQ VI+ AL +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
++VI +G + F LL +Q EA W ++NI +G + + V++HG VP V +L
Sbjct: 310 QKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 368
Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQ 213
+++A WA+ N + + L G++ PL+ L+ +
Sbjct: 369 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 413
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
+ +Q E T + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 330 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 387
Query: 147 -GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI------AGDSPRCRDLVLS 199
GT E ++ G + + LL + + + + A+ NI G++ + ++
Sbjct: 388 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 447
Query: 200 QGGL 203
GGL
Sbjct: 448 CGGL 451
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 307 bits (786), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
+V G+ SN+ Q + T RKLLS E+ PPI+ +IR+G++P+FV FL + D +QFE+
Sbjct: 18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
AWALTNIASGTSE TK V+D GA+P F+ LL SP + EQAVWALGNIAGD RDLV
Sbjct: 78 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
+ G + PLLA L P LS LRN TWTLSN CR K P PP D V LP L L
Sbjct: 138 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 196
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L ++ PALR +GN
Sbjct: 197 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 256
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
IVTG D QTQ VI+ AL +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 257 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 312
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
++VI +G + F LL +Q EA W ++NI +G + + V++HG VP V +L
Sbjct: 266 QKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 324
Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQ 213
+++A WA+ N + + L G++ PL+ L+ +
Sbjct: 325 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 369
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
+ +Q E T + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 286 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 343
Query: 147 -GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI------AGDSPRCRDLVLS 199
GT E ++ G + + LL + + + + A+ NI G++ + ++
Sbjct: 344 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 403
Query: 200 QGGL 203
GGL
Sbjct: 404 CGGL 407
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 307 bits (786), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
+V G+ SN+ Q + T RKLLS E+ PPI+ +IR+G++P+FV FL + D +QFE+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
AWALTNIASGTSE TK V+D GA+P F+ LL SP + EQAVWALGNIAGD RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
+ G + PLLA L P LS LRN TWTLSN CR K P PP D V LP L L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
IVTG D QTQ VI+ AL +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
++VI +G + F LL +Q EA W ++NI +G + + V++HG VP V +L
Sbjct: 310 QKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 368
Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQ 213
+++A WA+ N + + L G++ PL+ L+ +
Sbjct: 369 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 413
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
+ +Q E T + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 330 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 387
Query: 147 -GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI------AGDSPRCRDLVLS 199
GT E ++ G + + LL + + + + A+ NI G++ + ++
Sbjct: 388 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 447
Query: 200 QGGL 203
GGL
Sbjct: 448 CGGL 451
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 307 bits (786), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
+V G+ SN+ Q + T RKLLS E+ PPI+ +IR+G++P+FV FL + D +QFE+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
AWALTNIASGTSE TK V+D GA+P F+ LL SP + EQAVWALGNIAGD RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
+ G + PLLA L P LS LRN TWTLSN CR K P PP D V LP L L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
IVTG D QTQ VI+ AL +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
++VI +G + F LL +Q EA W ++NI +G + + V++HG VP V +L
Sbjct: 260 QKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 318
Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQ 213
+++A WA+ N + + L G++ PL+ L+ +
Sbjct: 319 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 363
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
+ +Q E T + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 280 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 337
Query: 147 -GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI------AGDSPRCRDLVLS 199
GT E ++ G + + LL + + + + A+ NI G++ + ++
Sbjct: 338 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 397
Query: 200 QGGL 203
GGL
Sbjct: 398 CGGL 401
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 307 bits (786), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
+V G+ SN+ Q + T RKLLS E+ PPI+ +IR+G++P+FV FL + D +QFE+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
AWALTNIASGTSE TK V+D GA+P F+ LL SP + EQAVWALGNIAGD RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
+ G + PLLA L P LS LRN TWTLSN CR K P PP D V LP L L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
IVTG D QTQ VI+ AL +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
++VI +G + F LL +Q EA W ++NI +G + + V++HG VP V +L
Sbjct: 260 QKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 318
Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQ 213
+++A WA+ N + + L G++ PL+ L+ +
Sbjct: 319 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 363
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
+ +Q E T + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 280 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 337
Query: 147 -GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI------AGDSPRCRDLVLS 199
GT E ++ G + + LL + + + + A+ NI G++ + ++
Sbjct: 338 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 397
Query: 200 QGGL 203
GGL
Sbjct: 398 CGGL 401
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 307 bits (786), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
+V G+ SN+ Q + T RKLLS E+ PPI+ +IR+G++P+FV FL + D +QFE+
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
AWALTNIASGTSE TK V+D GA+P F+ LL SP + EQAVWALGNIAGD RDLV
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
+ G + PLLA L P LS LRN TWTLSN CR K P PP D V LP L L
Sbjct: 131 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 189
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L ++ PALR +GN
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
IVTG D QTQ VI+ AL +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
++VI +G + F LL +Q EA W ++NI +G + + V++HG VP V +L
Sbjct: 259 QKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 317
Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQ 213
+++A WA+ N + + L G++ PL+ L+ +
Sbjct: 318 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 362
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
+ +Q E T + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 279 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 336
Query: 147 -GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI------AGDSPRCRDLVLS 199
GT E ++ G + + LL + + + + A+ NI G++ + ++
Sbjct: 337 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 396
Query: 200 QGGL 203
GGL
Sbjct: 397 CGGL 400
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 307 bits (786), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
+V G+ SN+ Q + T RKLLS E+ PPI+ +IR+G++P+FV FL + D +QFE+
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
AWALTNIASGTSE TK V+D GA+P F+ LL SP + EQAVWALGNIAGD RDLV
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
+ G + PLLA L P LS LRN TWTLSN CR K P PP D V LP L L
Sbjct: 131 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 189
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L ++ PALR +GN
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
IVTG D QTQ VI+ AL +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
++VI +G + F LL +Q EA W ++NI +G + + V++HG VP V +L
Sbjct: 259 QKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 317
Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQ 213
+++A WA+ N + + L G++ PL+ L+ +
Sbjct: 318 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 362
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
+ +Q E T + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 279 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 336
Query: 147 -GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI------AGDSPRCRDLVLS 199
GT E ++ G + + LL + + + + A+ NI G++ + ++
Sbjct: 337 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 396
Query: 200 QGGL 203
GGL
Sbjct: 397 CGGL 400
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 306 bits (785), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
+V G+ SN+ Q + T RKLLS E+ PPI+ +IR+G++P+FV FL + D +QFE+
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
AWALTNIASGTSE TK V+D GA+P F+ LL SP + EQAVWALGNIAGD RDLV
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
+ G + PLLA L P LS LRN TWTLSN CR K P PP D V LP L L
Sbjct: 127 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 185
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L ++ PALR +GN
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
IVTG D QTQ VI+ AL +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
++VI +G + F LL +Q EA W ++NI +G + + V++HG VP V +L
Sbjct: 255 QKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 313
Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQ 213
+++A WA+ N + + L G++ PL+ L+ +
Sbjct: 314 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 358
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
+ +Q E T + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 275 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 332
Query: 147 -GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI------AGDSPRCRDLVLS 199
GT E ++ G + + LL + + + + A+ NI G++ + ++
Sbjct: 333 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 392
Query: 200 QGGL 203
GGL
Sbjct: 393 CGGL 396
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 306 bits (784), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
+V G+ SN+ Q + T RKLLS E+ PPI+ +IR+G++P+FV FL + D +QFE+
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
AWALTNIASGTSE TK V+D GA+P F+ LL SP + EQAVWALGNIAGD RDLV
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
+ G + PLLA L P LS LRN TWTLSN CR K P PP D V LP L L
Sbjct: 127 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 185
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L ++ PALR +GN
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
IVTG D QTQ VI+ AL +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
++VI +G + F LL +Q EA W ++NI +G + + V++HG VP V +L
Sbjct: 255 QKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 313
Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQ 213
+++A WA+ N + + L G++ PL+ L+ +
Sbjct: 314 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 358
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
+ +Q E T + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 275 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 332
Query: 147 -GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI------AGDSPRCRDLVLS 199
GT E ++ G + + LL + + + + A+ NI G++ + ++
Sbjct: 333 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 392
Query: 200 QGGL 203
GGL
Sbjct: 393 CGGL 396
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 301 bits (771), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 157/297 (52%), Positives = 202/297 (68%), Gaps = 8/297 (2%)
Query: 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
+V G+ S++ Q + T RKLLS E+ PPI+ +IR+G++P+FV FL R D +QFE+
Sbjct: 13 IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
AWALTNIASGTSE TK V+D GA+P F+ LL SP + EQAVWALGNIAGD RDLV
Sbjct: 73 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
+ G + PLLA L P +S LRN TWTLSN CR K P PP D V LP L L
Sbjct: 133 IKYGAVDPLLALL-AVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRL 191
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
+H +D EVL D CWA+SYL+DG N++I V++ GV P+L + L ++ PALR +GN
Sbjct: 192 LHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGN 251
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
IVTG D QTQ VI+ AL +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 252 IVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 307
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP 171
VI +G + F LL +Q EA W ++NI +G + + V++HG VP V +L
Sbjct: 263 VIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKA 321
Query: 172 SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQ 213
+++AVWA+ N + + L G++ PL+ L +
Sbjct: 322 DFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAK 364
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 130/230 (56%), Gaps = 8/230 (3%)
Query: 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
LP M + S+D Q T +F ++LS + + I+ VI +G +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
EA WAL+NIASG +E + VID GA+P V+LL SP++ + ++A+WAL NIA
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG---KPQPPFDQVSPALPALAHL 251
V+ G L P L QL P +L+ A W LSN G + Q D + ALPAL L
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQL 188
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
+ S ++++L +A WALS ++ G N++ QAV EAG +L + H + +
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 129/234 (55%), Gaps = 8/234 (3%)
Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
+P+ + L +D Q Q A + I S +E + VID GA+P V+LL SP++ + +
Sbjct: 14 LPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG---KP 234
+A+WAL NIA V+ G L P L QL P +L+ A W LSN G +
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
Q D + ALPAL L+ S ++++L +A WALS ++ G N++IQAVI+AG P L + L
Sbjct: 132 QAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189
Query: 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA 348
P+ +L AL + NI +G + Q Q V E AL L L S +K I+KEA
Sbjct: 190 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK-IQKEA 242
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 112/206 (54%), Gaps = 9/206 (4%)
Query: 172 SDDVREQ--AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
SDD++EQ A I D V+ G L P L QL P +L+ A W LSN
Sbjct: 23 SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNI 81
Query: 230 CRG---KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
G + Q D + ALPAL L+ S ++++L +A WALS ++ G N++IQAVI+AG
Sbjct: 82 ASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
P L + L P+ +L AL + NI +G + Q Q VI+ ALP L+ LLS + + I +
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 198
Query: 347 EACWTVSNITAGNREQIQVIMHVHAF 372
EA W +SNI +G EQ Q + A
Sbjct: 199 EALWALSNIASGGNEQKQAVKEAGAL 224
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 97/164 (59%), Gaps = 4/164 (2%)
Query: 213 QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272
Q +LS R + LS+ + Q D + ALPAL L+ S ++++L +A WALS ++
Sbjct: 27 QEQLSATRKFSQILSDGNE-QIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIAS 83
Query: 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL 332
G N++IQAVI+AG P L + L P+ +L AL + NI +G + Q Q VI+ ALP L
Sbjct: 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 143
Query: 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIV 376
+ LLS + + I +EA W +SNI +G EQIQ ++ A +V
Sbjct: 144 VQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 186
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
I+ VI +G +P V+ L + LQ EA WAL+NIASG +E + V + GA+ +L
Sbjct: 173 IQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 231
Query: 169 YSPSDDVREQAVWAL 183
++ ++++A AL
Sbjct: 232 SHENEKIQKEAQEAL 246
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 97/175 (55%), Gaps = 6/175 (3%)
Query: 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG---KPQPPFDQVSPALPALAHLIHSNDD 257
G +P + Q P L++A LS G + Q D + ALPAL L+ S ++
Sbjct: 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVID--AGALPALVQLLSSPNE 68
Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317
++L +A WALS ++ G N++IQAVI+AG P L + L P+ +L AL + NI +G +
Sbjct: 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAF 372
Q Q VI+ ALP L+ LLS + + I +EA W +SNI +G EQ Q + A
Sbjct: 129 EQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 100/191 (52%), Gaps = 7/191 (3%)
Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR 220
+P V+ L SP + A+ L IA V+ G L P L QL P +L+
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQ 72
Query: 221 NATWTLSNFCRG---KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK 277
A W LSN G + Q D + ALPAL L+ S ++++L +A WALS ++ G N++
Sbjct: 73 EALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130
Query: 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337
IQAVI+AG P L + L P+ +L AL + NI +G + Q Q V E AL L L S
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 338 GNYKKSIKKEA 348
+K I+KEA
Sbjct: 191 HENEK-IQKEA 200
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 103/199 (51%), Gaps = 8/199 (4%)
Query: 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIER--SPPIEEVIRSGVVPRFVEFLLREDYPQ 132
LP MV + S D Q E + RKL I + I+ VI +G +P V+ L +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192
LQ EA WAL+NIASG +E + VID GA+P V+LL SP++ + ++A+WAL NIA
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR-GKPQPPFDQVSPALPALAHL 251
V+ G L P L QL P +L+ A W LSN G Q + + AL L L
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Query: 252 IHSNDDEVLTDACWALSYL 270
++++ +A AL L
Sbjct: 189 QSHENEKIQKEAQEALEKL 207
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 77/132 (58%), Gaps = 1/132 (0%)
Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304
LP + ++S D + L A LS ++ G N++IQAVI+AG P L + L P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364
AL + NI +G + Q Q VI+ ALP L+ LLS + + I +EA W +SNI +G EQIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 365 VIMHVHAFSIIV 376
++ A +V
Sbjct: 133 AVIDAGALPALV 144
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 97/174 (55%), Gaps = 6/174 (3%)
Query: 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG---KPQPPFDQVSPALPALAHLIHSNDD 257
G +P + Q P L++A LS G + Q D + ALPAL L+ S ++
Sbjct: 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVID--AGALPALVQLLSSPNE 68
Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317
++L +A WALS ++ G N++IQAVI+AG P L + L P+ +L AL + NI +G +
Sbjct: 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371
Q Q VI+ ALP L+ LLS + + I +EA W +SNI +G EQ Q + A
Sbjct: 129 EQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGA 181
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 103/200 (51%), Gaps = 7/200 (3%)
Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR 220
+P V+ L SP + A+ L IA V+ G L P L QL P +L+
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQ 72
Query: 221 NATWTLSNFCRG---KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK 277
A W LSN G + Q D + ALPAL L+ S ++++L +A WALS ++ G N++
Sbjct: 73 EALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130
Query: 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337
IQAVI+AG P L + L P+ +L AL + NI +G + Q Q V E A P L L S
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQS 190
Query: 338 GNYKKSIKKEACWTVSNITA 357
+K I+KEA + I +
Sbjct: 191 SPNEK-IQKEAQEALEKIQS 209
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 105/199 (52%), Gaps = 8/199 (4%)
Query: 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIER--SPPIEEVIRSGVVPRFVEFLLREDYPQ 132
LP MV + S D Q E + RKL I + I+ VI +G +P V+ L +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192
LQ EA WAL+NIASG +E + VID GA+P V+LL SP++ + ++A+WAL NIA
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR-GKPQPPFDQVSPALPALAHL 251
V+ G L P L QL P +L+ A W LSN G Q + + A PAL L
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
Query: 252 IHSNDDEVLTDACWALSYL 270
S ++++ +A AL +
Sbjct: 189 QSSPNEKIQKEAQEALEKI 207
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 77/132 (58%), Gaps = 1/132 (0%)
Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304
LP + ++S D + L A LS ++ G N++IQAVI+AG P L + L P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364
AL + NI +G + Q Q VI+ ALP L+ LLS + + I +EA W +SNI +G EQIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 365 VIMHVHAFSIIV 376
++ A +V
Sbjct: 133 AVIDAGALPALV 144
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 93/160 (58%), Gaps = 4/160 (2%)
Query: 213 QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272
Q +LS R + LS+ + Q D + ALPAL L+ S ++++L +A WALS ++
Sbjct: 27 QEQLSATRKFSQILSDGNE-QIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIAS 83
Query: 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL 332
G N++IQAVI+AG P L + L P+ +L AL + NI +G + Q Q VI+ ALP L
Sbjct: 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 143
Query: 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAF 372
+ LLS + + I +EA W +SNI +G EQ Q + A
Sbjct: 144 VQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 105/197 (53%), Gaps = 4/197 (2%)
Query: 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
LP M + S+D Q T +F ++LS + + I+ VI +G +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
EA WAL+NIASG +E + VID GA+P V+LL SP++ + ++A+WAL NIA
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR-GKPQPPFDQVSPALPALAHLIH 253
V+ G L P L QL P +L+ A W LSN G Q + + AL L L
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 254 SNDDEVLTDACWALSYL 270
++++ +A AL L
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 97/182 (53%), Gaps = 9/182 (4%)
Query: 172 SDDVREQ--AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
SDD++EQ A I D V+ G L P L QL P +L+ A W LSN
Sbjct: 23 SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNI 81
Query: 230 CRG---KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
G + Q D + ALPAL L+ S ++++L +A WALS ++ G N++IQAVI+AG
Sbjct: 82 ASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
P L + L P+ +L AL + NI +G + Q Q V E AL L L S +K I+K
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK-IQK 198
Query: 347 EA 348
EA
Sbjct: 199 EA 200
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 3/133 (2%)
Query: 245 LPALAHLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
LP + ++S+D + A S LSDG N++IQAVI+AG P L + L P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
AL + NI +G + Q Q VI+ ALP L+ LLS + + I +EA W +SNI +G EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 364 QVIMHVHAFSIIV 376
Q ++ A +V
Sbjct: 132 QAVIDAGALPALV 144
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 6/244 (2%)
Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
V + V+ L D + Q EAA L IASG + K ++D G V + VKLL S +V++
Sbjct: 4 VEKLVKLLTSTDS-ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
+A AL NIA ++ GG V +L +L + + A L+N G P
Sbjct: 63 EAARALANIASGPDEAIKAIVDAGG-VEVLVKLLTSTDSEVQKEAARALANIASG-PDEA 120
Query: 238 FDQVSPA--LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295
+ A + L L+ S D EV +A AL+ ++ G ++ I+A+++AG L + L
Sbjct: 121 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 180
Query: 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
V A R + NI +G + +++ + L LL+ + ++KEA + NI
Sbjct: 181 STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLT-STDSEVQKEAQRALENI 239
Query: 356 TAGN 359
+G
Sbjct: 240 KSGG 243
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 111/236 (47%), Gaps = 10/236 (4%)
Query: 84 SNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWAL 141
S DS Q E R L I P I+ ++ +G V V+ L D ++Q EAA AL
Sbjct: 13 STDSETQKEAA---RDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARAL 68
Query: 142 TNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG 201
NIASG E K ++D G V + VKLL S +V+++A AL NIA ++ G
Sbjct: 69 ANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG 128
Query: 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA--LPALAHLIHSNDDEV 259
G V +L +L + + A L+N G P + A + L L+ S D EV
Sbjct: 129 G-VEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEV 186
Query: 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315
+A AL+ ++ G I+A+++AG L + L V A R + NI +G
Sbjct: 187 QKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Query: 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA--LPALAHLIHSNDDEVL 260
LV LL + + + + A L+ G P + A + L L+ S D EV
Sbjct: 7 LVKLLTSTDSETQ----KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQ 61
Query: 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320
+A AL+ ++ G ++ I+A+++AG L + L V A R + NI +G D
Sbjct: 62 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121
Query: 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIV 376
+ +++ + L+ LL+ + ++KEA ++NI +G E I+ I+ ++V
Sbjct: 122 KAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV 176
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
+L + L A R + I +G + +++ + L+ LL+ + ++K
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT-STDSEVQK 62
Query: 347 EACWTVSNITAGNREQIQVIMHVHAFSIIV 376
EA ++NI +G E I+ I+ ++V
Sbjct: 63 EAARALANIASGPDEAIKAIVDAGGVEVLV 92
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 11/263 (4%)
Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDV 175
P+ V ++R E A S H + + G +P VK+L SP D V
Sbjct: 60 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 119
Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235
A+ L N+ + V GGL ++A LN + + L T L G +
Sbjct: 120 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQE 178
Query: 236 PPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
++ P AL +++ + +++L L LS +++K A++EAG L
Sbjct: 179 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLH 237
Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
L PS ++ L T+ N+ D T+ L L+ LL G+ ++ A +S
Sbjct: 238 LTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILS 293
Query: 354 NITAGNREQIQVIMHVHAFSIIV 376
N+T N + ++ V +V
Sbjct: 294 NLTCNNYKNKMMVCQVGGIEALV 316
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)
Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
G +PR V+ L+R Q QF + I G + H ++VI
Sbjct: 399 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 458
Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
+P+FV+LLYSP ++++ A L +A D
Sbjct: 459 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 11/263 (4%)
Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDV 175
P+ V ++R E A S H + + G +P VK+L SP D V
Sbjct: 43 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 102
Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235
A+ L N+ + V GGL ++A LN + + L T L G +
Sbjct: 103 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQE 161
Query: 236 PPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
++ P AL +++ + +++L L LS +++K A++EAG L
Sbjct: 162 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLH 220
Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
L PS ++ L T+ N+ D T+ L L+ LL G+ ++ A +S
Sbjct: 221 LTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILS 276
Query: 354 NITAGNREQIQVIMHVHAFSIIV 376
N+T N + ++ V +V
Sbjct: 277 NLTCNNYKNKMMVCQVGGIEALV 299
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)
Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
G +PR V+ L+R Q QF + I G + H ++VI
Sbjct: 382 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 441
Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
+P+FV+LLYSP ++++ A L +A D
Sbjct: 442 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 11/263 (4%)
Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDV 175
P+ V ++R E A S H + + G +P VK+L SP D V
Sbjct: 56 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 115
Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235
A+ L N+ + V GGL ++A LN + + L T L G +
Sbjct: 116 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQE 174
Query: 236 PPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
++ P AL +++ + +++L L LS +++K A++EAG L
Sbjct: 175 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLH 233
Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
L PS ++ L T+ N+ D T+ L L+ LL G+ ++ A +S
Sbjct: 234 LTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILS 289
Query: 354 NITAGNREQIQVIMHVHAFSIIV 376
N+T N + ++ V +V
Sbjct: 290 NLTCNNYKNKMMVCQVGGIEALV 312
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)
Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
G +PR V+ L+R Q QF + I G + H ++VI
Sbjct: 395 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 454
Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
+P+FV+LLYSP ++++ A L +A D
Sbjct: 455 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 11/263 (4%)
Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDV 175
P+ V ++R E A S H + + G +P VK+L SP D V
Sbjct: 43 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 102
Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235
A+ L N+ + V GGL ++A LN + + L T L G +
Sbjct: 103 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQE 161
Query: 236 PPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
++ P AL +++ + +++L L LS +++K A++EAG L
Sbjct: 162 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLH 220
Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
L PS ++ L T+ N+ D T+ L L+ LL G+ ++ A +S
Sbjct: 221 LTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILS 276
Query: 354 NITAGNREQIQVIMHVHAFSIIV 376
N+T N + ++ V +V
Sbjct: 277 NLTCNNYKNKMMVCQVGGIEALV 299
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)
Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
G +PR V+ L+R Q QF + I G + H ++VI
Sbjct: 382 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 441
Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
+P+FV+LLYSP ++++ A L +A D
Sbjct: 442 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 11/263 (4%)
Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDV 175
P+ V ++R E A S H + + G +P VK+L SP D V
Sbjct: 59 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 118
Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235
A+ L N+ + V GGL ++A LN + + L T L G +
Sbjct: 119 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQE 177
Query: 236 PPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
++ P AL +++ + +++L L LS +++K A++EAG L
Sbjct: 178 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLH 236
Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
L PS ++ L T+ N+ D T+ L L+ LL G+ ++ A +S
Sbjct: 237 LTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILS 292
Query: 354 NITAGNREQIQVIMHVHAFSIIV 376
N+T N + ++ V +V
Sbjct: 293 NLTCNNYKNKMMVCQVGGIEALV 315
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)
Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
G +PR V+ L+R Q QF + I G + H ++VI
Sbjct: 398 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 457
Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
+P+FV+LLYSP ++++ A L +A D
Sbjct: 458 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 491
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 11/263 (4%)
Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDV 175
P+ V ++R E A S H + + G +P VK+L SP D V
Sbjct: 62 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 121
Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235
A+ L N+ + V GGL ++A LN + + L T L G +
Sbjct: 122 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQE 180
Query: 236 PPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
++ P AL +++ + +++L L LS +++K A++EAG L
Sbjct: 181 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLH 239
Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
L PS ++ L T+ N+ D T+ L L+ LL G+ ++ A +S
Sbjct: 240 LTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILS 295
Query: 354 NITAGNREQIQVIMHVHAFSIIV 376
N+T N + ++ V +V
Sbjct: 296 NLTCNNYKNKMMVCQVGGIEALV 318
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)
Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
G +PR V+ L+R Q QF + I G + H ++VI
Sbjct: 401 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 460
Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
+P+FV+LLYSP ++++ A L +A D
Sbjct: 461 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 494
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 11/263 (4%)
Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDV 175
P+ V ++R E A S H + + G +P VK+L SP D V
Sbjct: 45 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 104
Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235
A+ L N+ + V GGL ++A LN + + L T L G +
Sbjct: 105 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQE 163
Query: 236 PPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
++ P AL +++ + +++L L LS +++K A++EAG L
Sbjct: 164 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLH 222
Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
L PS ++ L T+ N+ D T+ L L+ LL G+ ++ A +S
Sbjct: 223 LTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILS 278
Query: 354 NITAGNREQIQVIMHVHAFSIIV 376
N+T N + ++ V +V
Sbjct: 279 NLTCNNYKNKMMVCQVGGIEALV 301
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)
Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
G +PR V+ L+R Q QF + I G + H ++VI
Sbjct: 384 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 443
Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
+P+FV+LLYSP ++++ A L +A D
Sbjct: 444 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 477
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 11/263 (4%)
Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDV 175
P+ V ++R E A S H + + G +P VK+L SP D V
Sbjct: 61 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 120
Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235
A+ L N+ + V GGL ++A LN + + L T L G +
Sbjct: 121 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQE 179
Query: 236 PPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
++ P AL +++ + +++L L LS +++K A++EAG L
Sbjct: 180 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLH 238
Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
L PS ++ L T+ N+ D T+ L L+ LL G+ ++ A +S
Sbjct: 239 LTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILS 294
Query: 354 NITAGNREQIQVIMHVHAFSIIV 376
N+T N + ++ V +V
Sbjct: 295 NLTCNNYKNKMMVCQVGGIEALV 317
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)
Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
G +PR V+ L+R Q QF + I G + H ++VI
Sbjct: 400 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 459
Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
+P+FV+LLYSP ++++ A L +A D
Sbjct: 460 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 493
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 11/263 (4%)
Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDV 175
P+ V ++R E A S H + + G +P VK+L SP D V
Sbjct: 56 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 115
Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235
A+ L N+ + V GGL ++A LN + + L T L G +
Sbjct: 116 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQE 174
Query: 236 PPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
++ P AL +++ + +++L L LS +++K A++EAG L
Sbjct: 175 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLH 233
Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
L PS ++ L T+ N+ D T+ L L+ LL G+ ++ A +S
Sbjct: 234 LTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILS 289
Query: 354 NITAGNREQIQVIMHVHAFSIIV 376
N+T N + ++ V +V
Sbjct: 290 NLTCNNYKNKMMVCQVGGIEALV 312
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)
Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
G +PR V+ L+R Q QF + I G + H ++VI
Sbjct: 395 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 454
Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
+P+FV+LLYSP ++++ A L +A D
Sbjct: 455 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 11/263 (4%)
Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDV 175
P+ V ++R E A S H + + G +P VK+L SP D V
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117
Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235
A+ L N+ + V GGL ++A LN + + L T L G +
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQE 176
Query: 236 PPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
++ P AL +++ + +++L L LS +++K A++EAG L
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLH 235
Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
L PS ++ L T+ N+ D T+ L L+ LL G+ ++ A +S
Sbjct: 236 LTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILS 291
Query: 354 NITAGNREQIQVIMHVHAFSIIV 376
N+T N + ++ V +V
Sbjct: 292 NLTCNNYKNKMMVCQVGGIEALV 314
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)
Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
G +PR V+ L+R Q QF + I G + H ++VI
Sbjct: 397 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 456
Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
+P+FV+LLYSP ++++ A L +A D
Sbjct: 457 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 11/263 (4%)
Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDV 175
P+ V ++R E A S H + + G +P VK+L SP D V
Sbjct: 60 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 119
Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235
A+ L N+ + V GGL ++A LN + + L T L G +
Sbjct: 120 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQE 178
Query: 236 PPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
++ P AL +++ + +++L L LS +++K A++EAG L
Sbjct: 179 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLH 237
Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
L PS ++ L T+ N+ D T+ L L+ LL G+ ++ A +S
Sbjct: 238 LTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILS 293
Query: 354 NITAGNREQIQVIMHVHAFSIIV 376
N+T N + ++ V +V
Sbjct: 294 NLTCNNYKNKMMVCQVGGIEALV 316
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)
Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
G +PR V+ L+R Q QF + I G + H ++VI
Sbjct: 399 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 458
Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
+P+FV+LLYSP ++++ A L +A D
Sbjct: 459 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 11/263 (4%)
Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDV 175
P+ V ++R E A S H + + G +P VK+L SP D V
Sbjct: 47 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 106
Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235
A+ L N+ + V GGL ++A LN + + L T L G +
Sbjct: 107 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQE 165
Query: 236 PPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
++ P AL +++ + +++L L LS +++K A++EAG L
Sbjct: 166 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLH 224
Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
L PS ++ L T+ N+ D T+ L L+ LL G+ ++ A +S
Sbjct: 225 LTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILS 280
Query: 354 NITAGNREQIQVIMHVHAFSIIV 376
N+T N + ++ V +V
Sbjct: 281 NLTCNNYKNKMMVCQVGGIEALV 303
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)
Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
G +PR V+ L+R Q QF + I G + H ++VI
Sbjct: 386 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 445
Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
+P+FV+LLYSP ++++ A L +A D
Sbjct: 446 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 479
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
+AL IA +P ++ + +L+ N + KL+ L NF + F
Sbjct: 129 YALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGENSFKY 178
Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
V+P LP + +L+H D+ V A AL +L+ NDK++ V V RL E
Sbjct: 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLA-TLNDKLRKV----VIKRLEEL 226
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 111/270 (41%), Gaps = 14/270 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
++RS P+ V ++R E A S H + + G +P VK+L
Sbjct: 51 IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 107
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
SP D V A+ L N+ + V GGL ++A LN + + L T L
Sbjct: 108 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 166
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
G + ++ P AL +++ + +++L L LS +++K A++EAG
Sbjct: 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 225
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
L L PS ++ L T+ N+ D T+ L L+ LL G+ ++
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 281
Query: 347 EACWTVSNITAGNREQIQVIMHVHAFSIIV 376
A +SN+T N + ++ V +V
Sbjct: 282 CAAGILSNLTCNNYKNKMMVCQVGGIEALV 311
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)
Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
G +PR V+ L+R Q QF + I G + H ++VI
Sbjct: 394 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 453
Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
+P+FV+LLYSP ++++ A L +A D
Sbjct: 454 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 14/270 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
++RS P+ V ++R E A + S H + + G +P V +L
Sbjct: 187 IMRS---PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML 243
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
SP D V A+ L N+ + V GGL ++A LN + + L T L
Sbjct: 244 GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 302
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
G + ++ P AL +++ + +++L L LS +++K A++EAG
Sbjct: 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 361
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
L L PS ++ L T+ N+ D T+ L L+ LL G+ ++
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 417
Query: 347 EACWTVSNITAGNREQIQVIMHVHAFSIIV 376
A +SN+T N + ++ V +V
Sbjct: 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALV 447
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 20/94 (21%)
Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
G +PR V+ L+R Q QF + I + H ++VI
Sbjct: 530 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVI 589
Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
+P+FV+LLYSP ++++ A L +A D
Sbjct: 590 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 62/161 (38%), Gaps = 30/161 (18%)
Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
P+ VE Q Q A TN+ T+ V+ D +P+ + LL P+ DVR
Sbjct: 127 PKIVE--------QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNW 178
Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML-----RNATWTLSNFCRG- 232
A +A+ D+ RD V L N + ++ + R LS C
Sbjct: 179 AAFAININKYDNSDIRDC------FVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL 232
Query: 233 KPQPPFDQVSPA---------LPALAHLIHSNDD-EVLTDA 263
K +D + A LP L ++ DD E++T A
Sbjct: 233 KKNTVYDDIIEAAGELGDKTLLPVLDTXLYKFDDNEIITSA 273
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 20/94 (21%)
Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
G +PR V+ L+R Q QF I G + H ++VI
Sbjct: 339 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRIVI 398
Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
+P+FV+LLYSP ++++ A L +A D
Sbjct: 399 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 432
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 8/224 (3%)
Query: 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP 214
+ G +P VK L SP D V A+ L N+ + V GGL +A LN +
Sbjct: 39 IFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQEGAKXAVRLAGGLQKXVALLN-KT 97
Query: 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSD 272
+ L T L G + ++ P AL ++ + +++L L LS
Sbjct: 98 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIXRTYTYEKLLWTTSRVLKVLSV 157
Query: 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL 332
+++K A++EAG L L PS ++ L T+ N+ D T+ L L
Sbjct: 158 CSSNK-PAIVEAGGXQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGXEGLLGTL 213
Query: 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIV 376
+ LL G+ ++ A +SN+T N + + V +V
Sbjct: 214 VQLL-GSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALV 256
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
V FVE + D + + A A +I G + + H A+P + L+ S V+E
Sbjct: 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKE 429
Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQPKLSMLRNATWTLSN----FCRG 232
W +G IA D G+V L L PK++ N +WT+ N
Sbjct: 430 TTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQLAEA 487
Query: 233 KPQPPFDQVSPAL 245
P P ++ PAL
Sbjct: 488 TPSPIYN-FYPAL 499
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364
A+ G+I+ G D + +QALP +LNL++ + +K+ W + I E I
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN-DQSLQVKETTAWCIGRIADSVAESID 447
Query: 365 VIMHV 369
H+
Sbjct: 448 PQQHL 452
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
V FVE + D + + A A +I G + + H A+P + L+ S V+E
Sbjct: 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKE 429
Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQPKLSMLRNATWTLSN----FCRG 232
W +G IA D G+V L L PK++ N +WT+ N
Sbjct: 430 TTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQLAEA 487
Query: 233 KPQPPFDQVSPAL 245
P P ++ PAL
Sbjct: 488 TPSPIYN-FYPAL 499
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364
A+ G+I+ G D + +QALP +LNL++ + +K+ W + I E I
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN-DQSLQVKETTAWCIGRIADSVAESID 447
Query: 365 VIMHV 369
H+
Sbjct: 448 PQQHL 452
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
++RS P+ V ++R E A S H + + G +P VK+L
Sbjct: 50 IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 106
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211
SP D V A+ L N+ + V GGL ++A LN
Sbjct: 107 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 149
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
++RS P+ V ++R E A S H + + G +P VK+L
Sbjct: 50 IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 106
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211
SP D V A+ L N+ + V GGL ++A LN
Sbjct: 107 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 149
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 19/174 (10%)
Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
+P+ V++L +D + Q A+ + + + V G + V LL SP+ +V+
Sbjct: 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61
Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGL---VPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
+ A AL N+ S + Q G+ V LL + L W LS+ K
Sbjct: 62 QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121
Query: 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVF 287
+ ++ ALP LA D ++ + W DG ++ + V++ VF
Sbjct: 122 EEL----IADALPVLA------DRVIIPFSGWC-----DGNSNMSREVVDPEVF 160
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL----AQLNGQPK 215
A+P ++L+ PS VR+ A W +G I P + ++ L PLL L+ +P+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 216 LSMLRNATWTLSNFCRG 232
++ N W S+
Sbjct: 466 VA--SNVCWAFSSLAEA 480
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR 220
+P+ +LL+ V+E + LG IA + ++ L+P L Q K +++R
Sbjct: 399 LPLLKELLFHHEWVVKESGILVLGAIAEGC--MQGMIPYLPELIPHLIQCLSDKK-ALVR 455
Query: 221 NAT-WTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272
+ T WTLS + QPP + P + L I ++ V AC A + L +
Sbjct: 456 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 509
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 108 PIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWA---------LTNIASGTSEHTKV---- 154
P++E + V+PR V+ L++ + AA + I G + +
Sbjct: 394 PLQE---AAVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARD 450
Query: 155 ------VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLA 208
+ +P+FV+LLYS ++++ A L +A D D + ++G PL+
Sbjct: 451 PMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDK-EAADAIDAEGASAPLME 509
Query: 209 QLNGQ 213
L+ +
Sbjct: 510 LLHSR 514
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 108/291 (37%), Gaps = 53/291 (18%)
Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDV 175
P+ V ++R + A T+I S H + + G +P V++L SP + V
Sbjct: 60 PQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLSSPVESV 119
Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGL---VPLLAQ----------------------- 209
A+ L N+ + V GL VPLL +
Sbjct: 120 LFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNNPKFLAITTDCLQLLAYGNQES 179
Query: 210 -----LNGQPK--LSMLRNAT-----WTLSNFCRGKPQPPFDQVSPA------LPALAHL 251
NG P+ + ++RN + WT S + P ++ PA + AL
Sbjct: 180 KLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNK--PAIVEAGGMQALGKH 237
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
+ SN ++ + W L LSD Q +E+ V L L +VL A T+ N
Sbjct: 238 LTSNSPRLVQNCLWTLRNLSDVATK--QEGLES-VLKILVNQLSVDDVNVLTCATGTLSN 294
Query: 312 IVTGDDMQTQCVIEYQALPCLLN-LLSGNYKKSIKKEACWTVSNITAGNRE 361
+ + V + + L++ +L K I + A + ++T+ + E
Sbjct: 295 LTCNNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLTSRHPE 345
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR 220
+P+ +LL+ V+E + LG IA + ++ L+P L Q K +++R
Sbjct: 361 LPLLKELLFHHEWVVKESGILVLGAIAEGC--MQGMIPYLPELIPHLIQCLSDKK-ALVR 417
Query: 221 NAT-WTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272
+ T WTLS + QPP + P + L I ++ V AC A + L +
Sbjct: 418 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 24/121 (19%)
Query: 180 VWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML-RNATWTLSNFCRGKPQPPF 238
VW GD R +VL+ G +AQ G+ +L +L RNA F
Sbjct: 55 VWVWAGSYGDLEGARAVVLAAG-----VAQRPGETRLQLLDRNAQV-------------F 96
Query: 239 DQVSP----ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVF-PRLAEF 293
QV P A P L+ +N +V+T +ALS L G +++ F LAE+
Sbjct: 97 AQVVPRVLEAAPEAVLLVATNPVDVMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEY 156
Query: 294 L 294
L
Sbjct: 157 L 157
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR 220
+P+ +LL+ V+E + LG IA + ++ L+P L Q K +++R
Sbjct: 374 LPLLKELLFHHEWVVKESGILVLGAIAEGC--MQGMIPYLPELIPHLIQCLSDKK-ALVR 430
Query: 221 NAT-WTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272
+ T WTLS + QPP + P + L I ++ V AC A + L +
Sbjct: 431 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 484
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL----AQLNGQPK 215
A+P ++L+ PS VR+ A W +G I P + ++ L PLL L+ +P+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 216 LSMLRNATWTLSNFCRG 232
++ N W S+
Sbjct: 466 VA--SNVCWAFSSLAEA 480
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL----AQLNGQPK 215
A+P ++L+ PS VR+ A W +G I P + ++ L PLL L+ +P+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 216 LSMLRNATWTLSNFCRG 232
++ N W S+
Sbjct: 466 VA--SNVCWAFSSLAEA 480
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL----AQLNGQPK 215
A+P ++L+ PS VR+ A W +G I P + ++ L PLL L+ +P+
Sbjct: 284 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 340
Query: 216 LSMLRNATWTLSNFCRGKPQP---PFDQVSPALPALA 249
++ N W S+ + DQ PA L+
Sbjct: 341 VA--SNVCWAFSSLAEAAYEAADVADDQEEPATYCLS 375
>pdb|3RQZ|A Chain A, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
pdb|3RQZ|B Chain B, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
pdb|3RQZ|C Chain C, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
Length = 246
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Query: 172 SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231
SD R +W+LG+I G PR R+ V LV +LA P +S++ N W C
Sbjct: 24 SDAGRVDDIWSLGDIVGYGPRPRECV----ELVRVLA-----PNISVIGNHDWA----CI 70
Query: 232 GK 233
G+
Sbjct: 71 GR 72
>pdb|1QGK|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
Length = 44
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 13 RNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKR 49
+NK K D+ E RRRR + VE+RK K+++ + K+R
Sbjct: 8 KNKGK---DSTEMRRRRIEVNVELRKAKKDDQMLKRR 41
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL----AQLNGQPK 215
A+P ++L+ PS VR+ W +G I P + ++ L PLL L+ +P+
Sbjct: 409 AMPTLIELMKDPSVVVRDTTAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 216 LSMLRNATWTLSNFCRG 232
++ N W S+
Sbjct: 466 VA--SNVCWAFSSLAEA 480
>pdb|3THO|B Chain B, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 379
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSP--PIEEVIRSGVVPRFVEFLLREDYP 131
N P V V+ DSG+ + + L+ IER IEEV+R F E L + DY
Sbjct: 288 NFPGYVRVVYEEDSGILPDLMGEIDNLVKIERKSRREIEEVLRES-PEEFKEELDKLDYF 346
Query: 132 QL 133
+L
Sbjct: 347 EL 348
>pdb|3QG5|C Chain C, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|D Chain D, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 379
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSP--PIEEVIRSGVVPRFVEFLLREDYP 131
N P V V+ DSG+ + + L+ IER IEEV+R F E L + DY
Sbjct: 288 NFPGYVRVVYEEDSGILPDLXGEIDNLVKIERKSRREIEEVLRES-PEEFKEELDKLDYF 346
Query: 132 QL 133
+L
Sbjct: 347 EL 348
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
A+P ++L+ PS VR+ A W +G I P + ++ L PLL
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLL 453
>pdb|2X5W|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Substrate Cholest-4-En-3-One
Length = 440
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 13/155 (8%)
Query: 91 YECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150
+ T+ + I R + +GV+PRF + RED +F + N+ +
Sbjct: 77 FWAITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHT 132
Query: 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPL--LA 208
+ +I G P V L+ + R Q + A AG D V +PL +A
Sbjct: 133 RLRKIISRGFTPRAVGRLHDELQE-RAQKIAAEAAAAGSG----DFVEQVSCELPLQAIA 187
Query: 209 QLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP 243
L G P+ R + SN G P + + P
Sbjct: 188 GLLGVPQED--RGKLFHWSNEMTGNEDPEYAHIDP 220
>pdb|3IVY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, P212121 Crystal Form
pdb|3IW0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, C2221 Crystal Form
pdb|3IW1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Androstenedione
pdb|3IW2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Econazole
Length = 433
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 13/155 (8%)
Query: 91 YECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150
+ T+ + I R + +GV+PRF + RED +F + N+ +
Sbjct: 70 FWAITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHT 125
Query: 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPL--LA 208
+ +I G P V L+ + R Q + A AG D V +PL +A
Sbjct: 126 RLRKIISRGFTPRAVGRLHDELQE-RAQKIAAEAAAAGSG----DFVEQVSCELPLQAIA 180
Query: 209 QLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP 243
L G P+ R + SN G P + + P
Sbjct: 181 GLLGVPQED--RGKLFHWSNEMTGNEDPEYAHIDP 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,534,371
Number of Sequences: 62578
Number of extensions: 466847
Number of successful extensions: 1787
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 996
Number of HSP's gapped (non-prelim): 223
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)