Query 015537
Match_columns 405
No_of_seqs 312 out of 2000
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 07:14:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 2E-78 4.3E-83 515.2 27.5 387 7-402 5-396 (526)
2 KOG0166 Karyopherin (importin) 100.0 2.3E-74 4.9E-79 527.4 37.0 388 8-404 4-393 (514)
3 KOG0166 Karyopherin (importin) 100.0 9.7E-46 2.1E-50 339.3 27.6 320 73-401 109-433 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 3.6E-45 7.8E-50 312.1 18.6 309 72-385 113-429 (526)
5 PLN03200 cellulose synthase-in 100.0 1.1E-37 2.5E-42 325.4 34.6 324 72-404 188-559 (2102)
6 PLN03200 cellulose synthase-in 100.0 7.8E-35 1.7E-39 304.3 34.8 322 73-404 404-764 (2102)
7 KOG4224 Armadillo repeat prote 100.0 6E-29 1.3E-33 214.7 18.9 320 71-404 124-446 (550)
8 KOG4224 Armadillo repeat prote 100.0 8.1E-27 1.7E-31 201.6 25.0 318 71-402 165-491 (550)
9 PF05804 KAP: Kinesin-associat 99.9 1.3E-20 2.8E-25 183.6 30.8 313 73-399 290-644 (708)
10 PF05804 KAP: Kinesin-associat 99.9 9.4E-20 2E-24 177.5 30.9 310 78-405 255-565 (708)
11 KOG1048 Neural adherens juncti 99.8 2.3E-17 5E-22 157.4 23.1 317 74-400 234-680 (717)
12 KOG4199 Uncharacterized conser 99.8 1.9E-15 4.1E-20 130.3 25.7 309 84-404 118-444 (461)
13 KOG0168 Putative ubiquitin fus 99.7 3.7E-16 8.1E-21 148.9 20.2 262 74-339 168-438 (1051)
14 KOG4199 Uncharacterized conser 99.7 1.3E-14 2.8E-19 125.2 27.6 280 114-403 102-402 (461)
15 PRK09687 putative lyase; Provi 99.7 5.1E-15 1.1E-19 131.5 24.4 255 74-401 24-279 (280)
16 KOG2122 Beta-catenin-binding p 99.7 6E-16 1.3E-20 154.3 16.6 266 92-360 317-604 (2195)
17 PF10508 Proteasom_PSMB: Prote 99.7 5.5E-14 1.2E-18 135.7 29.6 315 76-402 41-364 (503)
18 PF10508 Proteasom_PSMB: Prote 99.7 9.9E-14 2.2E-18 134.0 30.0 319 74-404 78-420 (503)
19 KOG4500 Rho/Rac GTPase guanine 99.7 8.1E-15 1.7E-19 130.4 18.0 314 85-403 54-389 (604)
20 PRK09687 putative lyase; Provi 99.7 1.2E-14 2.6E-19 129.1 19.3 225 117-402 24-248 (280)
21 PF04826 Arm_2: Armadillo-like 99.7 2.5E-14 5.4E-19 124.3 20.7 197 112-315 8-206 (254)
22 KOG1048 Neural adherens juncti 99.6 3.3E-14 7.2E-19 136.1 20.5 282 117-403 234-640 (717)
23 KOG2122 Beta-catenin-binding p 99.6 7.3E-14 1.6E-18 139.8 21.9 323 72-402 234-599 (2195)
24 cd00020 ARM Armadillo/beta-cat 99.6 1.3E-14 2.8E-19 113.2 13.3 117 281-403 3-119 (120)
25 cd00020 ARM Armadillo/beta-cat 99.6 2.8E-14 6.2E-19 111.2 14.4 119 111-231 2-120 (120)
26 PF01749 IBB: Importin beta bi 99.6 1.5E-15 3.3E-20 111.3 2.4 90 6-95 3-96 (97)
27 KOG4500 Rho/Rac GTPase guanine 99.5 6.2E-12 1.4E-16 112.2 22.3 309 73-385 87-417 (604)
28 PRK13800 putative oxidoreducta 99.5 1.6E-11 3.4E-16 127.1 28.9 259 74-401 622-896 (897)
29 PF04826 Arm_2: Armadillo-like 99.5 9.8E-13 2.1E-17 114.3 16.9 194 156-357 9-205 (254)
30 KOG2023 Nuclear transport rece 99.5 3.8E-13 8.3E-18 125.6 14.6 315 73-402 128-503 (885)
31 KOG2171 Karyopherin (importin) 99.5 1.1E-11 2.4E-16 123.3 24.6 319 73-405 118-462 (1075)
32 KOG1222 Kinesin associated pro 99.5 8.3E-11 1.8E-15 106.6 26.0 312 74-399 305-658 (791)
33 cd00256 VATPase_H VATPase_H, r 99.5 4E-11 8.6E-16 111.0 23.9 280 74-357 102-425 (429)
34 cd00256 VATPase_H VATPase_H, r 99.5 8E-11 1.7E-15 109.0 25.8 318 75-401 55-422 (429)
35 KOG1293 Proteins containing ar 99.4 3.8E-10 8.2E-15 106.1 25.0 320 77-404 13-533 (678)
36 KOG2023 Nuclear transport rece 99.4 3.3E-11 7.2E-16 112.9 17.3 269 116-402 128-461 (885)
37 KOG1241 Karyopherin (importin) 99.4 1.3E-11 2.9E-16 117.3 14.7 317 75-403 131-476 (859)
38 PF01602 Adaptin_N: Adaptin N 99.4 5.7E-11 1.2E-15 117.2 19.3 255 73-357 42-296 (526)
39 PRK13800 putative oxidoreducta 99.3 2.7E-10 5.9E-15 118.0 23.3 230 114-402 619-865 (897)
40 PF01602 Adaptin_N: Adaptin N 99.3 9E-11 1.9E-15 115.8 18.3 288 74-403 80-368 (526)
41 KOG2759 Vacuolar H+-ATPase V1 99.3 3.2E-10 7E-15 101.5 19.4 280 75-358 116-439 (442)
42 KOG2171 Karyopherin (importin) 99.3 4.5E-09 9.7E-14 105.1 27.6 312 77-400 163-500 (1075)
43 PTZ00429 beta-adaptin; Provisi 99.3 1.4E-08 3E-13 101.3 30.9 257 74-357 69-326 (746)
44 KOG1517 Guanine nucleotide bin 99.3 7.9E-10 1.7E-14 108.6 20.3 278 87-375 450-750 (1387)
45 KOG0168 Putative ubiquitin fus 99.2 9.5E-10 2.1E-14 106.0 20.1 263 118-384 169-440 (1051)
46 KOG2160 Armadillo/beta-catenin 99.2 1.8E-09 3.9E-14 95.5 20.1 183 131-314 97-282 (342)
47 KOG2160 Armadillo/beta-catenin 99.2 7.8E-10 1.7E-14 97.8 17.7 186 83-271 93-281 (342)
48 KOG1241 Karyopherin (importin) 99.2 7.8E-10 1.7E-14 105.5 18.4 321 75-402 174-528 (859)
49 KOG1222 Kinesin associated pro 99.2 2.3E-09 4.9E-14 97.5 20.2 300 87-404 277-578 (791)
50 KOG1293 Proteins containing ar 99.2 2.1E-08 4.5E-13 94.7 26.1 296 71-368 49-544 (678)
51 KOG2759 Vacuolar H+-ATPase V1 99.2 1.5E-08 3.3E-13 90.9 22.5 319 74-401 66-435 (442)
52 PTZ00429 beta-adaptin; Provisi 99.2 5.1E-08 1.1E-12 97.4 28.7 274 74-379 33-307 (746)
53 PF03224 V-ATPase_H_N: V-ATPas 99.1 3.6E-09 7.8E-14 96.5 15.7 232 161-398 57-308 (312)
54 KOG0946 ER-Golgi vesicle-tethe 99.1 1.8E-07 3.8E-12 90.1 26.9 322 73-400 22-395 (970)
55 COG5215 KAP95 Karyopherin (imp 99.1 1.4E-08 3E-13 94.2 18.4 311 76-404 136-479 (858)
56 PF03224 V-ATPase_H_N: V-ATPas 99.0 3.7E-09 8.1E-14 96.4 13.8 216 75-295 60-293 (312)
57 KOG1517 Guanine nucleotide bin 99.0 1.6E-08 3.5E-13 99.7 17.9 254 73-330 472-748 (1387)
58 KOG3678 SARM protein (with ste 98.9 7.6E-08 1.6E-12 87.5 16.7 266 73-355 180-450 (832)
59 KOG0946 ER-Golgi vesicle-tethe 98.9 7.8E-07 1.7E-11 85.8 24.1 278 117-402 23-344 (970)
60 COG5215 KAP95 Karyopherin (imp 98.8 8.9E-07 1.9E-11 82.5 19.1 307 86-402 191-527 (858)
61 KOG3678 SARM protein (with ste 98.8 6.9E-07 1.5E-11 81.4 17.2 273 109-400 173-451 (832)
62 KOG1789 Endocytosis protein RM 98.7 9.1E-06 2E-10 80.9 25.1 286 89-382 1741-2142(2235)
63 KOG1062 Vesicle coat complex A 98.7 7.4E-06 1.6E-10 79.5 23.5 135 245-392 315-463 (866)
64 TIGR02270 conserved hypothetic 98.6 1.5E-05 3.3E-10 74.6 23.3 238 74-401 55-293 (410)
65 PF14664 RICTOR_N: Rapamycin-i 98.6 3.3E-06 7E-11 78.2 18.6 314 76-402 28-362 (371)
66 KOG1059 Vesicle coat complex A 98.6 8.5E-05 1.8E-09 71.5 26.1 219 75-316 146-367 (877)
67 COG5369 Uncharacterized conser 98.6 3.6E-07 7.8E-12 84.5 10.1 281 112-402 427-739 (743)
68 PF00514 Arm: Armadillo/beta-c 98.5 1.8E-07 3.9E-12 57.0 5.1 41 316-357 1-41 (41)
69 COG1413 FOG: HEAT repeat [Ener 98.5 3.1E-05 6.7E-10 71.8 22.3 186 74-314 44-242 (335)
70 KOG0213 Splicing factor 3b, su 98.5 7.2E-06 1.6E-10 78.9 17.2 231 160-401 800-1062(1172)
71 PF10165 Ric8: Guanine nucleot 98.5 4.1E-05 9E-10 73.1 22.4 265 94-361 2-341 (446)
72 KOG4413 26S proteasome regulat 98.5 0.00019 4.1E-09 63.1 23.9 300 75-378 84-460 (524)
73 PF00514 Arm: Armadillo/beta-c 98.5 2.6E-07 5.5E-12 56.4 4.7 41 148-188 1-41 (41)
74 KOG0213 Splicing factor 3b, su 98.4 6.1E-06 1.3E-10 79.4 14.9 259 76-358 802-1066(1172)
75 KOG2973 Uncharacterized conser 98.4 0.00015 3.2E-09 63.2 21.9 270 75-357 5-314 (353)
76 TIGR02270 conserved hypothetic 98.4 7.9E-05 1.7E-09 69.9 22.1 209 75-357 88-296 (410)
77 KOG1059 Vesicle coat complex A 98.4 0.00014 3E-09 70.2 23.5 218 117-357 145-365 (877)
78 KOG1242 Protein containing ada 98.4 0.00012 2.7E-09 69.6 23.2 233 117-365 97-333 (569)
79 KOG1061 Vesicle coat complex A 98.4 6.6E-06 1.4E-10 79.8 14.7 247 117-380 122-396 (734)
80 KOG1061 Vesicle coat complex A 98.4 6.7E-06 1.4E-10 79.7 14.5 299 75-402 123-451 (734)
81 COG5181 HSH155 U2 snRNP splice 98.4 8.1E-06 1.8E-10 77.0 14.4 261 75-357 606-870 (975)
82 COG5231 VMA13 Vacuolar H+-ATPa 98.4 2.2E-05 4.7E-10 68.5 15.8 230 123-356 156-427 (432)
83 COG5369 Uncharacterized conser 98.4 1E-05 2.2E-10 75.1 14.4 202 178-381 408-619 (743)
84 PF13646 HEAT_2: HEAT repeats; 98.4 7.1E-07 1.5E-11 65.0 5.6 87 287-400 1-88 (88)
85 KOG4646 Uncharacterized conser 98.4 6.5E-06 1.4E-10 62.5 10.6 126 71-200 14-140 (173)
86 KOG1062 Vesicle coat complex A 98.4 0.00014 3.1E-09 70.9 22.3 268 79-382 113-397 (866)
87 KOG4646 Uncharacterized conser 98.4 4.7E-06 1E-10 63.2 9.8 116 115-233 15-130 (173)
88 KOG1824 TATA-binding protein-i 98.4 6.7E-05 1.4E-09 74.3 20.0 289 77-379 9-307 (1233)
89 KOG0212 Uncharacterized conser 98.4 3.7E-05 8E-10 71.9 17.1 315 74-404 85-406 (675)
90 KOG2973 Uncharacterized conser 98.3 0.00018 3.8E-09 62.7 19.7 267 118-400 5-310 (353)
91 KOG1242 Protein containing ada 98.3 0.00051 1.1E-08 65.5 23.9 307 74-401 97-441 (569)
92 COG1413 FOG: HEAT repeat [Ener 98.3 7.5E-05 1.6E-09 69.2 18.3 188 116-357 43-242 (335)
93 PF05536 Neurochondrin: Neuroc 98.3 5.1E-05 1.1E-09 74.1 17.7 238 73-314 5-261 (543)
94 PF12348 CLASP_N: CLASP N term 98.3 1.1E-05 2.4E-10 70.3 11.8 189 83-279 17-213 (228)
95 KOG1240 Protein kinase contain 98.3 4.9E-05 1.1E-09 77.0 17.0 267 75-357 424-725 (1431)
96 PF13513 HEAT_EZ: HEAT-like re 98.3 1.6E-06 3.5E-11 56.8 4.5 55 342-402 1-55 (55)
97 PF13646 HEAT_2: HEAT repeats; 98.2 3.6E-06 7.7E-11 61.2 6.7 87 118-227 1-88 (88)
98 KOG0212 Uncharacterized conser 98.2 9.8E-05 2.1E-09 69.2 17.3 268 117-403 168-443 (675)
99 KOG1824 TATA-binding protein-i 98.2 8.9E-05 1.9E-09 73.4 17.6 214 130-367 832-1046(1233)
100 PF05536 Neurochondrin: Neuroc 98.2 0.00024 5.3E-09 69.4 19.7 236 160-402 6-259 (543)
101 PF13513 HEAT_EZ: HEAT-like re 98.2 3.7E-06 7.9E-11 55.1 4.5 55 299-355 1-55 (55)
102 KOG2259 Uncharacterized conser 98.1 0.00011 2.3E-09 70.3 15.4 215 164-402 203-473 (823)
103 KOG1060 Vesicle coat complex A 98.1 0.00055 1.2E-08 66.8 19.9 139 123-273 150-317 (968)
104 KOG1789 Endocytosis protein RM 98.1 0.0014 3E-08 66.1 22.6 262 71-339 1769-2142(2235)
105 KOG1077 Vesicle coat complex A 98.1 0.002 4.4E-08 62.3 22.7 292 76-396 114-425 (938)
106 PF12348 CLASP_N: CLASP N term 98.1 2.5E-05 5.4E-10 68.1 9.5 190 169-365 17-214 (228)
107 COG5181 HSH155 U2 snRNP splice 98.0 2.8E-05 6E-10 73.5 9.3 152 160-314 605-759 (975)
108 KOG2259 Uncharacterized conser 98.0 0.00017 3.8E-09 68.8 14.4 273 78-383 203-496 (823)
109 KOG2062 26S proteasome regulat 97.9 0.00028 6.1E-09 68.3 14.2 127 243-401 519-650 (929)
110 KOG2734 Uncharacterized conser 97.9 0.0052 1.1E-07 56.4 21.4 243 71-314 123-400 (536)
111 KOG1943 Beta-tubulin folding c 97.9 0.014 2.9E-07 59.5 25.5 309 74-403 342-704 (1133)
112 PF09759 Atx10homo_assoc: Spin 97.9 9.8E-05 2.1E-09 54.2 7.9 68 133-200 2-71 (102)
113 COG5231 VMA13 Vacuolar H+-ATPa 97.8 0.00066 1.4E-08 59.5 13.9 226 85-314 161-428 (432)
114 smart00185 ARM Armadillo/beta- 97.8 4.9E-05 1.1E-09 46.1 5.3 39 149-187 2-40 (41)
115 KOG4535 HEAT and armadillo rep 97.8 0.00011 2.3E-09 67.8 9.4 310 74-400 254-599 (728)
116 KOG1240 Protein kinase contain 97.8 0.0017 3.7E-08 66.4 18.2 233 74-314 463-725 (1431)
117 COG5096 Vesicle coat complex, 97.8 0.00099 2.1E-08 66.2 16.3 164 215-405 33-196 (757)
118 smart00185 ARM Armadillo/beta- 97.8 5.8E-05 1.2E-09 45.8 5.1 38 318-356 3-40 (41)
119 KOG1077 Vesicle coat complex A 97.8 0.0098 2.1E-07 57.8 22.1 300 74-403 75-397 (938)
120 KOG0567 HEAT repeat-containing 97.8 0.006 1.3E-07 52.3 18.5 242 85-400 17-276 (289)
121 KOG1060 Vesicle coat complex A 97.8 0.01 2.2E-07 58.3 21.7 235 74-339 72-334 (968)
122 KOG2734 Uncharacterized conser 97.7 0.036 7.8E-07 51.1 24.0 240 93-337 104-371 (536)
123 KOG4413 26S proteasome regulat 97.7 0.011 2.4E-07 52.3 18.8 300 91-402 61-375 (524)
124 PF10165 Ric8: Guanine nucleot 97.7 0.0062 1.4E-07 58.4 19.2 231 84-317 43-340 (446)
125 COG5240 SEC21 Vesicle coat com 97.6 0.003 6.5E-08 59.8 15.4 278 84-402 275-553 (898)
126 PF09759 Atx10homo_assoc: Spin 97.6 0.0007 1.5E-08 49.7 8.6 68 301-368 2-70 (102)
127 PF14664 RICTOR_N: Rapamycin-i 97.6 0.013 2.9E-07 54.5 19.1 224 161-395 27-260 (371)
128 COG5096 Vesicle coat complex, 97.6 0.01 2.3E-07 59.2 19.1 140 75-232 57-196 (757)
129 KOG1967 DNA repair/transcripti 97.5 0.00087 1.9E-08 66.6 11.3 188 160-353 816-1020(1030)
130 PF05004 IFRD: Interferon-rela 97.5 0.01 2.2E-07 53.9 17.3 190 75-271 45-256 (309)
131 KOG2274 Predicted importin 9 [ 97.5 0.01 2.3E-07 59.2 17.6 246 128-381 461-715 (1005)
132 KOG2274 Predicted importin 9 [ 97.5 0.019 4.1E-07 57.4 19.2 264 84-356 461-733 (1005)
133 PF08569 Mo25: Mo25-like; Int 97.5 0.0028 6.2E-08 57.8 12.9 212 154-367 71-295 (335)
134 KOG1991 Nuclear transport rece 97.5 0.017 3.7E-07 58.3 19.0 260 116-381 410-693 (1010)
135 KOG1248 Uncharacterized conser 97.4 0.029 6.3E-07 57.8 20.5 242 122-368 659-910 (1176)
136 KOG4535 HEAT and armadillo rep 97.4 0.027 5.9E-07 52.5 17.7 188 212-402 305-511 (728)
137 PF08569 Mo25: Mo25-like; Int 97.3 0.062 1.4E-06 49.2 19.9 240 111-355 71-330 (335)
138 PF11841 DUF3361: Domain of un 97.3 0.011 2.5E-07 47.1 13.2 124 193-317 3-134 (160)
139 KOG0211 Protein phosphatase 2A 97.3 0.0091 2E-07 60.1 15.5 267 116-400 237-504 (759)
140 PF12460 MMS19_C: RNAPII trans 97.3 0.17 3.8E-06 48.3 26.6 177 212-403 200-393 (415)
141 PF12717 Cnd1: non-SMC mitotic 97.3 0.013 2.8E-07 48.8 13.9 93 215-315 1-93 (178)
142 KOG4151 Myosin assembly protei 97.3 0.005 1.1E-07 60.7 12.9 215 73-293 504-720 (748)
143 KOG0211 Protein phosphatase 2A 97.3 0.016 3.5E-07 58.4 16.8 299 81-402 245-545 (759)
144 KOG0567 HEAT repeat-containing 97.3 0.048 1E-06 47.0 17.1 226 75-356 38-279 (289)
145 PF12717 Cnd1: non-SMC mitotic 97.2 0.013 2.9E-07 48.7 13.4 92 131-233 2-94 (178)
146 PF12755 Vac14_Fab1_bd: Vacuol 97.2 0.0012 2.6E-08 48.5 6.2 87 176-264 3-89 (97)
147 KOG1058 Vesicle coat complex C 97.2 0.015 3.2E-07 57.0 15.0 233 117-378 244-488 (948)
148 KOG1058 Vesicle coat complex C 97.2 0.019 4.2E-07 56.3 15.4 298 76-403 102-462 (948)
149 PF12460 MMS19_C: RNAPII trans 97.1 0.012 2.7E-07 56.0 14.0 203 75-292 191-413 (415)
150 PF11841 DUF3361: Domain of un 97.1 0.013 2.8E-07 46.8 11.6 125 109-235 4-135 (160)
151 KOG1078 Vesicle coat complex C 97.1 0.041 9E-07 54.3 16.8 258 118-402 247-530 (865)
152 KOG1248 Uncharacterized conser 97.1 0.038 8.3E-07 57.0 16.9 221 83-314 664-898 (1176)
153 KOG4151 Myosin assembly protei 97.0 0.0086 1.9E-07 59.1 11.9 231 144-381 489-723 (748)
154 PF11698 V-ATPase_H_C: V-ATPas 97.0 0.0011 2.3E-08 50.1 4.4 73 242-314 42-115 (119)
155 COG5098 Chromosome condensatio 97.0 0.097 2.1E-06 51.2 18.2 175 81-277 861-1042(1128)
156 KOG2956 CLIP-associating prote 97.0 0.064 1.4E-06 49.9 16.2 147 202-357 330-477 (516)
157 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0021 4.5E-08 47.2 5.5 92 219-312 3-94 (97)
158 KOG1991 Nuclear transport rece 97.0 0.23 5.1E-06 50.5 21.1 225 87-316 432-673 (1010)
159 KOG3665 ZYG-1-like serine/thre 96.9 0.15 3.3E-06 51.6 20.2 200 182-403 494-696 (699)
160 KOG1943 Beta-tubulin folding c 96.9 0.055 1.2E-06 55.3 16.7 214 159-382 341-594 (1133)
161 KOG0414 Chromosome condensatio 96.9 0.042 9.1E-07 56.7 15.9 160 116-297 919-1083(1251)
162 KOG1967 DNA repair/transcripti 96.9 0.0091 2E-07 59.7 11.0 186 204-398 818-1018(1030)
163 PF08045 CDC14: Cell division 96.9 0.096 2.1E-06 45.7 16.1 102 131-232 105-208 (257)
164 KOG4653 Uncharacterized conser 96.9 0.033 7.2E-07 55.5 14.7 221 164-399 732-959 (982)
165 KOG0915 Uncharacterized conser 96.9 0.033 7.2E-07 58.8 14.9 220 116-339 956-1184(1702)
166 KOG0915 Uncharacterized conser 96.9 0.53 1.1E-05 50.4 23.2 297 75-382 1000-1328(1702)
167 KOG1078 Vesicle coat complex C 96.8 0.054 1.2E-06 53.5 15.3 259 76-356 248-531 (865)
168 PF13764 E3_UbLigase_R4: E3 ub 96.8 0.45 9.8E-06 48.7 22.3 254 115-383 83-388 (802)
169 COG5240 SEC21 Vesicle coat com 96.8 0.15 3.2E-06 48.9 17.0 208 118-357 266-477 (898)
170 KOG4653 Uncharacterized conser 96.7 0.051 1.1E-06 54.2 14.1 223 122-355 733-962 (982)
171 COG5116 RPN2 26S proteasome re 96.7 0.031 6.6E-07 53.2 12.1 97 247-361 520-619 (926)
172 PF05004 IFRD: Interferon-rela 96.7 0.14 3.1E-06 46.5 16.3 189 163-357 47-257 (309)
173 PF06371 Drf_GBD: Diaphanous G 96.7 0.02 4.4E-07 48.0 10.2 147 35-187 31-186 (187)
174 PF11698 V-ATPase_H_C: V-ATPas 96.6 0.0047 1E-07 46.7 5.3 71 117-187 44-114 (119)
175 PF12719 Cnd3: Nuclear condens 96.6 0.28 6.1E-06 44.5 17.4 171 116-297 26-209 (298)
176 PF12231 Rif1_N: Rap1-interact 96.5 0.65 1.4E-05 43.6 20.1 265 83-356 3-302 (372)
177 KOG3036 Protein involved in ce 96.5 0.2 4.3E-06 42.8 14.6 144 88-233 94-249 (293)
178 KOG0414 Chromosome condensatio 96.5 0.017 3.8E-07 59.3 9.9 136 240-396 916-1056(1251)
179 KOG2956 CLIP-associating prote 96.5 0.098 2.1E-06 48.8 13.8 184 75-271 288-476 (516)
180 PF02985 HEAT: HEAT repeat; I 96.5 0.0045 9.7E-08 34.8 3.3 29 328-357 1-29 (31)
181 PF06025 DUF913: Domain of Unk 96.4 0.11 2.3E-06 48.7 14.0 145 106-251 95-252 (379)
182 PF04078 Rcd1: Cell differenti 96.4 0.048 1E-06 47.2 10.7 141 91-233 68-220 (262)
183 PF01603 B56: Protein phosphat 96.4 0.45 9.8E-06 45.2 18.2 263 91-367 108-380 (409)
184 PF14668 RICTOR_V: Rapamycin-i 96.3 0.033 7.2E-07 38.2 7.6 67 302-370 4-70 (73)
185 PF02985 HEAT: HEAT repeat; I 96.3 0.0081 1.8E-07 33.7 3.7 30 117-147 1-30 (31)
186 PF12719 Cnd3: Nuclear condens 96.2 0.054 1.2E-06 49.2 10.9 169 75-254 28-208 (298)
187 KOG2611 Neurochondrin/leucine- 96.2 0.52 1.1E-05 44.3 16.7 192 75-271 13-224 (698)
188 KOG1820 Microtubule-associated 96.2 0.29 6.2E-06 50.1 16.6 186 76-272 256-443 (815)
189 COG5656 SXM1 Importin, protein 96.2 0.48 1E-05 47.0 17.1 276 115-403 407-710 (970)
190 PF08045 CDC14: Cell division 96.2 0.097 2.1E-06 45.6 11.4 101 88-189 106-208 (257)
191 PF05918 API5: Apoptosis inhib 96.2 0.13 2.8E-06 50.0 13.4 123 171-311 34-159 (556)
192 KOG1243 Protein kinase [Genera 96.2 0.29 6.3E-06 48.1 15.6 259 76-357 257-515 (690)
193 PF11865 DUF3385: Domain of un 96.2 0.05 1.1E-06 44.2 9.1 147 116-271 10-156 (160)
194 PF11701 UNC45-central: Myosin 96.1 0.02 4.3E-07 46.4 6.6 148 202-354 4-156 (157)
195 KOG2062 26S proteasome regulat 96.1 0.41 8.9E-06 47.3 16.2 158 159-339 519-677 (929)
196 PF13764 E3_UbLigase_R4: E3 ub 96.0 2.1 4.5E-05 44.0 21.7 238 114-357 115-406 (802)
197 PF05918 API5: Apoptosis inhib 96.0 0.18 3.9E-06 49.1 13.5 129 120-268 27-158 (556)
198 PF04078 Rcd1: Cell differenti 96.0 0.22 4.8E-06 43.2 12.6 186 86-275 8-221 (262)
199 PF14668 RICTOR_V: Rapamycin-i 95.9 0.042 9.1E-07 37.7 6.3 66 134-201 4-70 (73)
200 PF01603 B56: Protein phosphat 95.8 0.67 1.4E-05 44.1 16.6 234 155-401 129-367 (409)
201 PF06025 DUF913: Domain of Unk 95.8 0.48 1E-05 44.4 15.2 207 178-402 3-226 (379)
202 KOG1566 Conserved protein Mo25 95.7 0.83 1.8E-05 40.7 15.0 228 153-382 73-312 (342)
203 PRK14707 hypothetical protein; 95.7 4.4 9.5E-05 45.5 22.7 319 74-400 206-526 (2710)
204 PF01347 Vitellogenin_N: Lipop 95.6 0.91 2E-05 46.0 17.7 238 75-347 349-612 (618)
205 KOG1820 Microtubule-associated 95.5 0.43 9.2E-06 48.9 14.3 189 160-357 254-443 (815)
206 KOG2137 Protein kinase [Signal 95.4 0.22 4.8E-06 49.1 11.7 212 155-382 308-520 (700)
207 PF11864 DUF3384: Domain of un 95.4 2.8 6.2E-05 40.7 22.8 283 88-399 5-329 (464)
208 PF13251 DUF4042: Domain of un 95.4 0.52 1.1E-05 39.0 12.1 141 133-273 2-175 (182)
209 KOG1020 Sister chromatid cohes 95.3 0.22 4.7E-06 53.1 11.7 162 220-400 795-956 (1692)
210 smart00638 LPD_N Lipoprotein N 95.3 0.22 4.8E-06 49.8 11.9 138 243-402 393-543 (574)
211 KOG1243 Protein kinase [Genera 95.2 0.063 1.4E-06 52.5 7.2 183 74-271 331-514 (690)
212 KOG2137 Protein kinase [Signal 95.2 0.57 1.2E-05 46.3 13.5 136 157-299 387-522 (700)
213 PLN03076 ARF guanine nucleotid 95.0 2.5 5.4E-05 47.5 19.4 273 85-367 1149-1504(1780)
214 KOG2025 Chromosome condensatio 95.0 0.28 6E-06 48.3 10.8 130 216-356 60-189 (892)
215 PF08506 Cse1: Cse1; InterPro 94.9 1.1 2.3E-05 42.0 14.3 143 242-399 209-370 (370)
216 PF07814 WAPL: Wings apart-lik 94.9 1.4 3.1E-05 41.1 15.3 248 118-375 23-317 (361)
217 COG5116 RPN2 26S proteasome re 94.9 0.23 4.9E-06 47.6 9.7 152 122-297 522-674 (926)
218 PF11701 UNC45-central: Myosin 94.8 0.42 9.1E-06 38.7 10.1 136 254-400 16-155 (157)
219 KOG2025 Chromosome condensatio 94.8 1.1 2.3E-05 44.4 14.0 107 115-228 84-190 (892)
220 smart00638 LPD_N Lipoprotein N 94.8 1.9 4E-05 43.3 16.7 237 74-347 312-568 (574)
221 KOG2999 Regulator of Rac1, req 94.7 1.4 3.1E-05 42.2 14.4 159 74-236 84-247 (713)
222 PF12530 DUF3730: Protein of u 94.7 2.6 5.7E-05 36.7 19.4 141 118-273 2-152 (234)
223 PF01347 Vitellogenin_N: Lipop 94.7 0.27 5.9E-06 49.7 10.7 172 203-402 397-587 (618)
224 KOG3036 Protein involved in ce 94.7 2.5 5.5E-05 36.3 20.1 196 74-274 27-249 (293)
225 COG5218 YCG1 Chromosome conden 94.6 0.67 1.5E-05 44.7 12.1 104 285-401 91-196 (885)
226 PF11864 DUF3384: Domain of un 94.6 4.7 0.0001 39.2 21.2 249 86-357 42-330 (464)
227 KOG3665 ZYG-1-like serine/thre 94.6 0.94 2E-05 46.1 14.0 192 140-350 494-690 (699)
228 PF06371 Drf_GBD: Diaphanous G 94.4 0.3 6.5E-06 40.8 8.7 110 117-230 67-186 (187)
229 KOG1020 Sister chromatid cohes 94.1 11 0.00023 41.2 26.1 81 301-385 1188-1279(1692)
230 PF12830 Nipped-B_C: Sister ch 94.1 1.8 3.9E-05 36.2 12.7 145 75-232 10-168 (187)
231 KOG2611 Neurochondrin/leucine- 94.0 1.6 3.5E-05 41.2 12.9 133 121-256 16-165 (698)
232 COG5218 YCG1 Chromosome conden 94.0 1.1 2.5E-05 43.3 12.1 108 238-356 86-195 (885)
233 PF04063 DUF383: Domain of unk 93.9 0.83 1.8E-05 38.2 10.1 124 255-382 7-159 (192)
234 KOG2032 Uncharacterized conser 93.7 6.6 0.00014 37.4 19.0 259 79-356 264-530 (533)
235 PF03378 CAS_CSE1: CAS/CSE pro 93.7 4.7 0.0001 38.6 16.0 264 131-405 44-325 (435)
236 KOG1949 Uncharacterized conser 93.6 7.4 0.00016 38.8 16.9 184 119-313 177-369 (1005)
237 PF14500 MMS19_N: Dos2-interac 93.4 5.3 0.00012 35.4 15.3 218 121-357 4-237 (262)
238 COG5098 Chromosome condensatio 93.4 0.38 8.2E-06 47.3 8.1 137 243-400 892-1033(1128)
239 KOG1788 Uncharacterized conser 93.4 3.7 8E-05 42.8 15.0 295 71-382 464-786 (2799)
240 KOG1949 Uncharacterized conser 93.3 4.3 9.3E-05 40.4 14.9 201 109-315 122-332 (1005)
241 PF12530 DUF3730: Protein of u 93.3 5.1 0.00011 34.9 17.2 200 162-384 3-217 (234)
242 PRK14707 hypothetical protein; 93.0 19 0.00042 40.8 22.7 298 75-380 165-467 (2710)
243 PF10363 DUF2435: Protein of u 92.8 0.82 1.8E-05 33.2 7.4 71 204-276 6-76 (92)
244 KOG2933 Uncharacterized conser 92.8 0.63 1.4E-05 41.3 7.9 144 161-313 90-233 (334)
245 PF04063 DUF383: Domain of unk 92.7 0.66 1.4E-05 38.9 7.8 124 170-294 6-156 (192)
246 KOG1525 Sister chromatid cohes 92.7 15 0.00033 39.9 19.2 75 285-361 259-333 (1266)
247 PF08324 PUL: PUL domain; Int 92.6 2.2 4.7E-05 38.0 11.7 146 132-279 78-238 (268)
248 PF13251 DUF4042: Domain of un 92.3 1.6 3.4E-05 36.2 9.3 111 247-358 44-175 (182)
249 PF04388 Hamartin: Hamartin pr 92.2 3.4 7.3E-05 42.0 13.4 157 74-252 5-161 (668)
250 PF10363 DUF2435: Protein of u 92.1 0.99 2.1E-05 32.7 7.1 72 287-361 5-76 (92)
251 PF14500 MMS19_N: Dos2-interac 92.0 8.4 0.00018 34.1 16.8 220 78-314 4-237 (262)
252 COG5656 SXM1 Importin, protein 92.0 1.6 3.6E-05 43.4 10.3 136 238-379 403-548 (970)
253 KOG0891 DNA-dependent protein 91.9 1.8 4E-05 49.5 11.9 202 155-361 561-767 (2341)
254 KOG1993 Nuclear transport rece 91.7 14 0.00031 37.5 16.4 255 118-379 528-790 (978)
255 KOG2032 Uncharacterized conser 91.7 13 0.00027 35.6 18.8 152 114-272 252-415 (533)
256 COG5209 RCD1 Uncharacterized p 91.6 1.4 3E-05 37.3 8.2 142 89-232 116-269 (315)
257 PF14225 MOR2-PAG1_C: Cell mor 91.6 9.3 0.0002 33.8 14.8 216 79-314 13-254 (262)
258 PF12031 DUF3518: Domain of un 91.4 0.7 1.5E-05 39.6 6.4 84 88-173 139-230 (257)
259 KOG2005 26S proteasome regulat 91.4 8.2 0.00018 38.3 14.1 142 74-232 416-559 (878)
260 PF06685 DUF1186: Protein of u 91.4 9.3 0.0002 33.4 14.6 135 132-289 57-201 (249)
261 PF12830 Nipped-B_C: Sister ch 91.3 7.7 0.00017 32.4 13.4 145 202-357 9-167 (187)
262 KOG2999 Regulator of Rac1, req 90.7 17 0.00037 35.3 16.0 155 161-317 85-245 (713)
263 PF04869 Uso1_p115_head: Uso1 90.7 13 0.00028 33.9 14.5 154 131-314 52-231 (312)
264 cd03569 VHS_Hrs_Vps27p VHS dom 90.1 1.1 2.3E-05 35.6 6.1 74 73-146 41-114 (142)
265 PF10521 DUF2454: Protein of u 90.0 3.7 8.1E-05 36.9 10.4 138 117-255 120-277 (282)
266 PF08324 PUL: PUL domain; Int 90.0 1.6 3.4E-05 38.9 8.0 134 214-347 122-264 (268)
267 KOG2933 Uncharacterized conser 89.9 1.6 3.4E-05 38.9 7.4 140 204-357 91-234 (334)
268 KOG0413 Uncharacterized conser 89.7 1.7 3.7E-05 44.6 8.3 132 173-317 945-1076(1529)
269 PF11707 Npa1: Ribosome 60S bi 89.6 17 0.00037 33.5 18.7 154 118-273 58-238 (330)
270 cd03569 VHS_Hrs_Vps27p VHS dom 89.5 6.5 0.00014 31.2 10.2 75 159-233 41-116 (142)
271 KOG0891 DNA-dependent protein 89.4 3.7 8.1E-05 47.2 11.5 193 203-402 567-761 (2341)
272 PF08167 RIX1: rRNA processing 89.2 4.5 9.8E-05 33.0 9.4 108 285-401 25-140 (165)
273 PF08506 Cse1: Cse1; InterPro 89.1 6.6 0.00014 36.8 11.5 128 131-267 225-370 (370)
274 PF08167 RIX1: rRNA processing 88.7 10 0.00022 31.0 11.1 115 117-237 26-149 (165)
275 cd03568 VHS_STAM VHS domain fa 88.6 1.6 3.5E-05 34.7 6.2 75 73-147 37-111 (144)
276 PF04869 Uso1_p115_head: Uso1 88.5 19 0.00042 32.8 14.9 159 243-403 34-230 (312)
277 KOG1993 Nuclear transport rece 88.2 33 0.00071 35.1 20.5 314 75-400 528-860 (978)
278 smart00288 VHS Domain present 88.0 1.8 3.9E-05 33.9 6.1 74 73-146 37-111 (133)
279 PF03378 CAS_CSE1: CAS/CSE pro 87.7 22 0.00049 34.1 14.3 302 75-383 28-352 (435)
280 cd03561 VHS VHS domain family; 87.4 8.7 0.00019 30.0 9.6 75 160-234 38-115 (133)
281 KOG1988 Uncharacterized conser 86.9 24 0.00051 36.3 14.0 251 76-357 27-281 (970)
282 PF07814 WAPL: Wings apart-lik 86.8 27 0.00059 32.7 16.3 92 161-253 23-116 (361)
283 cd03561 VHS VHS domain family; 86.7 3.4 7.4E-05 32.3 7.0 74 73-147 37-113 (133)
284 KOG1822 Uncharacterized conser 86.6 58 0.0013 36.9 17.5 273 75-355 878-1187(2067)
285 smart00288 VHS Domain present 86.4 11 0.00023 29.6 9.6 74 160-233 38-113 (133)
286 PF11538 Snurportin1: Snurport 86.3 0.82 1.8E-05 27.1 2.4 38 11-49 2-39 (40)
287 PF12231 Rif1_N: Rap1-interact 86.1 30 0.00066 32.5 16.9 218 172-398 59-297 (372)
288 PF10274 ParcG: Parkin co-regu 85.5 15 0.00032 30.4 10.2 83 241-324 36-119 (183)
289 PLN03076 ARF guanine nucleotid 85.5 42 0.0009 38.4 16.5 213 164-381 1142-1404(1780)
290 KOG1822 Uncharacterized conser 85.3 73 0.0016 36.2 18.7 211 120-339 880-1110(2067)
291 PF12074 DUF3554: Domain of un 85.0 32 0.00069 31.8 13.7 213 158-382 21-256 (339)
292 cd03568 VHS_STAM VHS domain fa 84.7 6.1 0.00013 31.4 7.5 74 160-233 38-112 (144)
293 PF06685 DUF1186: Protein of u 84.7 27 0.00058 30.6 12.6 117 242-376 72-203 (249)
294 cd03567 VHS_GGA VHS domain fam 84.5 3.9 8.4E-05 32.3 6.2 74 73-146 38-116 (139)
295 PF12074 DUF3554: Domain of un 84.2 21 0.00046 33.0 12.1 217 113-337 19-254 (339)
296 KOG1566 Conserved protein Mo25 84.0 32 0.0007 31.0 16.1 195 195-398 73-280 (342)
297 PF14726 RTTN_N: Rotatin, an a 83.7 15 0.00032 27.0 8.7 92 88-182 2-94 (98)
298 KOG4464 Signaling protein RIC- 83.4 31 0.00067 32.3 12.1 154 204-357 48-231 (532)
299 PF00790 VHS: VHS domain; Int 82.3 13 0.00028 29.3 8.6 74 160-233 43-120 (140)
300 PF12031 DUF3518: Domain of un 82.2 3.8 8.2E-05 35.3 5.6 79 132-211 139-226 (257)
301 PF14225 MOR2-PAG1_C: Cell mor 82.1 36 0.00078 30.2 17.2 181 159-357 64-254 (262)
302 KOG0392 SNF2 family DNA-depend 82.0 13 0.00028 39.8 10.2 235 75-317 79-328 (1549)
303 PF12726 SEN1_N: SEN1 N termin 81.7 28 0.00061 36.1 13.0 109 76-188 444-553 (727)
304 KOG0413 Uncharacterized conser 80.9 7.2 0.00016 40.4 7.8 122 258-401 946-1070(1529)
305 KOG1832 HIV-1 Vpr-binding prot 80.8 13 0.00029 38.2 9.5 159 107-275 592-776 (1516)
306 COG5209 RCD1 Uncharacterized p 80.5 15 0.00033 31.3 8.4 95 262-358 119-219 (315)
307 PF12726 SEN1_N: SEN1 N termin 79.5 35 0.00075 35.4 12.8 131 212-357 451-585 (727)
308 PF11865 DUF3385: Domain of un 79.2 13 0.00028 30.2 7.7 143 160-313 11-156 (160)
309 PF10274 ParcG: Parkin co-regu 78.9 19 0.00041 29.9 8.5 74 116-191 38-112 (183)
310 PF08767 CRM1_C: CRM1 C termin 78.0 48 0.001 30.4 11.9 179 132-313 42-243 (319)
311 KOG0301 Phospholipase A2-activ 78.0 80 0.0017 31.7 17.5 159 131-294 558-725 (745)
312 KOG1992 Nuclear export recepto 77.4 93 0.002 32.1 14.9 155 117-274 499-670 (960)
313 PF00790 VHS: VHS domain; Int 76.7 4 8.6E-05 32.3 4.0 74 73-146 42-118 (140)
314 PF11707 Npa1: Ribosome 60S bi 76.5 63 0.0014 29.8 19.4 159 244-404 57-237 (330)
315 cd08050 TAF6 TATA Binding Prot 75.9 31 0.00066 32.0 10.1 102 75-188 180-297 (343)
316 PF13001 Ecm29: Proteasome sta 75.6 46 0.001 32.7 11.8 152 114-273 270-444 (501)
317 PF08713 DNA_alkylation: DNA a 75.5 11 0.00025 32.0 6.9 134 212-369 61-196 (213)
318 cd03572 ENTH_epsin_related ENT 75.4 35 0.00075 26.2 9.3 93 304-402 20-117 (122)
319 PF12463 DUF3689: Protein of u 75.0 52 0.0011 29.8 10.9 127 153-279 3-180 (303)
320 KOG2549 Transcription initiati 75.0 76 0.0016 31.1 12.3 144 75-231 209-370 (576)
321 PF10521 DUF2454: Protein of u 74.6 29 0.00062 31.2 9.4 111 202-313 120-252 (282)
322 PF13001 Ecm29: Proteasome sta 74.6 32 0.0007 33.8 10.4 173 170-357 248-443 (501)
323 PF09324 DUF1981: Domain of un 74.3 6.1 0.00013 28.2 4.1 70 198-267 14-83 (86)
324 KOG2676 Uncharacterized conser 73.2 6 0.00013 36.0 4.5 64 136-199 375-440 (478)
325 PF08713 DNA_alkylation: DNA a 73.1 56 0.0012 27.6 11.7 141 119-284 54-196 (213)
326 KOG1791 Uncharacterized conser 72.9 1.1E+02 0.0023 34.1 13.9 205 150-355 1430-1658(1758)
327 PF09758 FPL: Uncharacterised 72.6 30 0.00064 27.6 7.8 122 149-270 16-147 (149)
328 KOG2038 CAATT-binding transcri 72.4 1.2E+02 0.0026 31.1 13.6 106 242-357 303-409 (988)
329 PF12783 Sec7_N: Guanine nucle 72.3 44 0.00096 27.2 9.3 108 88-199 37-157 (168)
330 PF08389 Xpo1: Exportin 1-like 72.1 19 0.0004 28.3 7.0 126 217-352 3-148 (148)
331 KOG0301 Phospholipase A2-activ 71.9 71 0.0015 32.0 11.6 143 255-403 556-703 (745)
332 smart00567 EZ_HEAT E-Z type HE 70.8 8.9 0.00019 20.8 3.4 21 343-365 2-22 (30)
333 PF08389 Xpo1: Exportin 1-like 70.6 19 0.00041 28.3 6.7 142 131-309 2-148 (148)
334 PF03130 HEAT_PBS: PBS lyase H 69.8 7.3 0.00016 20.7 2.8 13 344-356 1-13 (27)
335 KOG2149 Uncharacterized conser 69.2 90 0.002 29.3 11.2 133 244-380 59-192 (393)
336 PF04388 Hamartin: Hamartin pr 69.0 1.1E+02 0.0025 31.3 13.1 61 298-358 81-141 (668)
337 PF11791 Aconitase_B_N: Aconit 67.2 34 0.00073 27.2 6.9 45 301-357 79-123 (154)
338 PF08216 CTNNBL: Catenin-beta- 67.0 10 0.00022 28.3 3.8 43 261-304 64-106 (108)
339 PF08216 CTNNBL: Catenin-beta- 66.9 6.7 0.00015 29.2 2.9 43 134-177 63-105 (108)
340 PF04821 TIMELESS: Timeless pr 66.6 95 0.0021 27.6 14.3 189 71-316 11-210 (266)
341 KOG0803 Predicted E3 ubiquitin 66.6 2.2E+02 0.0047 31.7 16.7 254 74-337 42-330 (1312)
342 KOG4464 Signaling protein RIC- 65.0 1.3E+02 0.0028 28.5 16.8 134 76-211 48-197 (532)
343 PLN03205 ATR interacting prote 64.7 74 0.0016 29.8 9.6 159 242-401 322-513 (652)
344 cd08050 TAF6 TATA Binding Prot 63.8 65 0.0014 29.9 9.5 97 215-312 230-338 (343)
345 KOG2005 26S proteasome regulat 63.1 1.8E+02 0.0038 29.5 14.0 65 76-148 455-520 (878)
346 PF04499 SAPS: SIT4 phosphatas 62.0 56 0.0012 31.8 9.0 92 285-380 21-128 (475)
347 PF12463 DUF3689: Protein of u 61.6 1.3E+02 0.0028 27.4 12.7 127 194-320 2-179 (303)
348 PF06743 FAST_1: FAST kinase-l 61.6 25 0.00055 23.9 4.9 67 221-288 3-69 (71)
349 KOG1848 Uncharacterized conser 60.7 97 0.0021 34.1 10.7 207 159-370 840-1095(1610)
350 cd06561 AlkD_like A new struct 60.2 34 0.00073 28.6 6.6 75 288-369 108-182 (197)
351 cd03567 VHS_GGA VHS domain fam 59.5 86 0.0019 24.7 9.8 95 253-356 15-115 (139)
352 PF09324 DUF1981: Domain of un 58.2 56 0.0012 23.2 6.4 67 113-184 14-84 (86)
353 PF14726 RTTN_N: Rotatin, an a 57.5 74 0.0016 23.4 8.4 67 283-351 28-94 (98)
354 KOG2085 Serine/threonine prote 56.5 75 0.0016 29.9 8.2 46 149-194 167-212 (457)
355 PF08767 CRM1_C: CRM1 C termin 56.3 1.6E+02 0.0035 27.0 13.6 181 174-356 42-243 (319)
356 PF06012 DUF908: Domain of Unk 55.4 78 0.0017 29.2 8.5 66 132-198 237-307 (329)
357 KOG2073 SAP family cell cycle 55.1 2.6E+02 0.0057 29.4 12.6 216 160-380 191-430 (838)
358 cd03565 VHS_Tom1 VHS domain fa 54.8 55 0.0012 25.9 6.4 74 73-146 38-115 (141)
359 PF04499 SAPS: SIT4 phosphatas 54.4 81 0.0018 30.8 8.7 78 110-187 56-147 (475)
360 KOG2149 Uncharacterized conser 54.2 83 0.0018 29.5 8.2 133 202-338 59-193 (393)
361 cd00197 VHS_ENTH_ANTH VHS, ENT 54.0 67 0.0015 24.1 6.7 71 74-144 38-113 (115)
362 PF11791 Aconitase_B_N: Aconit 53.3 21 0.00047 28.3 3.7 99 74-188 23-123 (154)
363 KOG0889 Histone acetyltransfer 53.0 3.9E+02 0.0085 33.0 14.5 297 75-377 986-1326(3550)
364 PF07539 DRIM: Down-regulated 53.0 52 0.0011 26.0 6.0 82 285-381 17-99 (141)
365 cd03565 VHS_Tom1 VHS domain fa 52.2 1.1E+02 0.0024 24.1 7.8 74 160-233 39-117 (141)
366 KOG2199 Signal transducing ada 51.9 1.3E+02 0.0027 28.2 8.8 96 253-357 22-118 (462)
367 KOG1832 HIV-1 Vpr-binding prot 51.4 34 0.00074 35.4 5.6 71 130-201 675-785 (1516)
368 cd03572 ENTH_epsin_related ENT 49.7 1.2E+02 0.0026 23.4 9.8 98 254-356 12-118 (122)
369 KOG2085 Serine/threonine prote 49.2 2.4E+02 0.0052 26.8 13.1 76 110-187 171-247 (457)
370 KOG2213 Apoptosis inhibitor 5/ 48.4 1.7E+02 0.0037 27.5 9.0 136 171-312 36-178 (460)
371 KOG2073 SAP family cell cycle 47.9 3.6E+02 0.0078 28.5 16.6 40 193-232 182-221 (838)
372 COG5110 RPN1 26S proteasome re 47.7 2.9E+02 0.0063 27.4 14.4 250 117-400 414-701 (881)
373 PF06012 DUF908: Domain of Unk 47.6 1.1E+02 0.0025 28.1 8.3 73 262-335 241-324 (329)
374 KOG1410 Nuclear transport rece 47.4 3.3E+02 0.0071 27.8 22.3 292 74-382 6-357 (1082)
375 PF13925 Katanin_con80: con80 47.1 1.1E+02 0.0024 24.9 7.2 74 200-274 27-100 (164)
376 COG5537 IRR1 Cohesin [Cell div 46.7 3.1E+02 0.0067 27.5 10.9 97 171-271 287-385 (740)
377 PF14663 RasGEF_N_2: Rapamycin 46.5 41 0.00089 25.5 4.4 38 160-198 9-46 (115)
378 PF14764 SPG48: AP-5 complex s 43.5 3E+02 0.0066 26.6 10.3 61 215-275 281-342 (459)
379 PF10257 RAI16-like: Retinoic 43.2 53 0.0011 30.7 5.4 81 321-403 3-84 (353)
380 PF09758 FPL: Uncharacterised 42.9 34 0.00073 27.3 3.4 129 273-403 14-148 (149)
381 KOG3132 m3G-cap-specific nucle 42.9 18 0.00039 31.0 2.0 45 9-53 23-67 (325)
382 PLN03205 ATR interacting prote 42.7 75 0.0016 29.8 6.0 108 287-398 325-440 (652)
383 smart00802 UME Domain in UVSB 42.5 1E+02 0.0022 23.0 5.8 79 285-368 11-95 (107)
384 PF12397 U3snoRNP10: U3 small 42.2 1.5E+02 0.0033 22.4 10.0 70 117-190 7-76 (121)
385 PF10257 RAI16-like: Retinoic 42.1 2.9E+02 0.0063 25.7 11.7 165 109-291 2-178 (353)
386 KOG4524 Uncharacterized conser 42.1 1.1E+02 0.0023 32.3 7.5 96 285-382 803-901 (1014)
387 KOG0392 SNF2 family DNA-depend 41.4 1.2E+02 0.0025 33.2 7.8 107 160-271 817-924 (1549)
388 PF14631 FancD2: Fanconi anaem 41.1 2E+02 0.0043 32.6 10.0 149 116-272 431-587 (1426)
389 KOG4524 Uncharacterized conser 40.2 70 0.0015 33.6 5.9 97 241-339 801-901 (1014)
390 PF07539 DRIM: Down-regulated 40.0 1.9E+02 0.0041 22.9 9.5 81 159-252 17-97 (141)
391 PF07923 N1221: N1221-like pro 39.3 65 0.0014 29.1 5.3 56 240-295 57-126 (293)
392 PF07923 N1221: N1221-like pro 39.2 48 0.001 30.0 4.4 56 113-169 57-126 (293)
393 cd07064 AlkD_like_1 A new stru 37.8 2.3E+02 0.0051 24.0 8.1 74 288-369 118-191 (208)
394 KOG1525 Sister chromatid cohes 36.9 6.4E+02 0.014 28.2 22.6 212 124-358 58-289 (1266)
395 KOG2676 Uncharacterized conser 36.8 50 0.0011 30.4 3.9 62 305-366 376-438 (478)
396 KOG2199 Signal transducing ada 36.0 1.7E+02 0.0036 27.5 7.1 88 159-246 45-134 (462)
397 KOG1992 Nuclear export recepto 35.7 5.4E+02 0.012 27.0 19.6 33 72-104 497-529 (960)
398 PF14663 RasGEF_N_2: Rapamycin 35.6 1.6E+02 0.0035 22.3 6.1 39 117-157 9-47 (115)
399 KOG2021 Nuclear mRNA export fa 35.4 5.3E+02 0.012 26.8 13.2 57 86-148 206-262 (980)
400 KOG1087 Cytosolic sorting prot 35.3 71 0.0015 30.9 5.0 70 73-143 38-109 (470)
401 KOG1087 Cytosolic sorting prot 34.9 2.5E+02 0.0054 27.4 8.5 93 251-352 13-107 (470)
402 PF11229 DUF3028: Protein of u 34.6 4.6E+02 0.01 25.8 13.3 250 117-376 98-372 (589)
403 PF12765 Cohesin_HEAT: HEAT re 34.3 30 0.00066 20.7 1.6 24 285-308 18-41 (42)
404 KOG2549 Transcription initiati 33.9 4.8E+02 0.01 25.9 11.7 99 214-313 259-369 (576)
405 PF04510 DUF577: Family of unk 33.6 2.7E+02 0.0059 22.9 10.1 108 285-397 42-169 (174)
406 PF12054 DUF3535: Domain of un 33.0 4.6E+02 0.01 25.4 13.0 80 87-171 101-180 (441)
407 PF01365 RYDR_ITPR: RIH domain 32.1 2E+02 0.0043 24.3 6.9 78 300-381 76-153 (207)
408 PF15573 Imm27: Immunity prote 32.0 2.5E+02 0.0054 24.1 6.9 91 288-399 49-141 (259)
409 cd03562 CID CID (CTD-Interacti 31.4 2.2E+02 0.0048 21.2 6.8 87 214-309 17-103 (114)
410 PF01365 RYDR_ITPR: RIH domain 31.2 1.3E+02 0.0028 25.4 5.6 101 151-254 35-153 (207)
411 cd06561 AlkD_like A new struct 30.9 2E+02 0.0044 23.7 6.8 74 206-284 109-182 (197)
412 KOG2011 Sister chromatid cohes 29.3 5.9E+02 0.013 27.6 10.6 134 126-269 297-432 (1048)
413 PF08064 UME: UME (NUC010) dom 29.3 2.4E+02 0.0051 21.0 6.0 78 285-367 11-94 (107)
414 PF14868 DUF4487: Domain of un 28.7 3.6E+02 0.0079 27.0 8.7 60 215-274 493-554 (559)
415 COG5095 TAF6 Transcription ini 28.6 2.6E+02 0.0057 25.3 6.9 130 131-271 212-358 (450)
416 smart00802 UME Domain in UVSB 27.8 1.8E+02 0.004 21.7 5.1 69 116-189 11-84 (107)
417 COG2914 Uncharacterized protei 27.5 36 0.00077 24.6 1.2 29 10-38 68-97 (99)
418 KOG2081 Nuclear transport regu 27.4 6.3E+02 0.014 25.1 20.2 267 116-402 153-455 (559)
419 cd01882 BMS1 Bms1. Bms1 is an 27.4 22 0.00048 30.7 0.2 23 28-50 11-33 (225)
420 KOG2152 Sister chromatid cohes 27.3 7.2E+02 0.016 25.8 11.1 44 189-232 363-406 (865)
421 PF08064 UME: UME (NUC010) dom 27.2 2E+02 0.0044 21.3 5.4 69 116-189 11-84 (107)
422 KOG0889 Histone acetyltransfer 27.1 8.5E+02 0.018 30.5 12.0 180 159-339 1126-1331(3550)
423 PF07571 DUF1546: Protein of u 26.4 2.5E+02 0.0054 20.2 5.5 57 214-270 18-76 (92)
424 PF01465 GRIP: GRIP domain; I 26.1 1.6E+02 0.0036 18.0 4.2 34 288-321 10-43 (46)
425 KOG1848 Uncharacterized conser 25.9 3.2E+02 0.007 30.4 8.1 21 213-233 853-873 (1610)
426 PF12783 Sec7_N: Guanine nucle 25.8 3.6E+02 0.0077 21.8 9.1 81 279-361 67-149 (168)
427 PF08454 RIH_assoc: RyR and IP 25.5 2.9E+02 0.0064 20.7 6.5 41 298-338 66-107 (109)
428 PF03810 IBN_N: Importin-beta 25.2 1.4E+02 0.0031 20.1 4.0 33 326-358 13-46 (77)
429 PF11935 DUF3453: Domain of un 24.8 3.1E+02 0.0067 23.9 6.9 83 242-324 42-155 (239)
430 PF15178 TOM_sub5: Mitochondri 23.5 1.2E+02 0.0025 18.7 2.6 15 15-29 6-20 (51)
431 KOG4231 Intracellular membrane 23.3 1.3E+02 0.0029 29.2 4.4 69 287-356 330-398 (763)
432 PF05997 Nop52: Nucleolar prot 22.9 2.8E+02 0.0061 23.8 6.1 69 77-147 4-73 (217)
433 PF14631 FancD2: Fanconi anaem 21.7 3.5E+02 0.0076 30.7 7.9 139 212-357 445-587 (1426)
434 PF08454 RIH_assoc: RyR and IP 21.7 3.5E+02 0.0077 20.2 6.8 42 254-295 64-106 (109)
435 KOG4231 Intracellular membrane 21.5 1.2E+02 0.0027 29.5 3.8 61 126-187 338-398 (763)
436 KOG2312 Predicted transcriptio 21.5 18 0.00038 36.0 -1.6 149 140-293 16-169 (847)
437 KOG2022 Nuclear transport rece 21.2 1E+03 0.022 25.4 12.3 148 112-272 454-619 (982)
438 KOG2219 Uncharacterized conser 20.8 4.3E+02 0.0093 26.7 7.3 165 171-336 39-219 (864)
439 PF14666 RICTOR_M: Rapamycin-i 20.6 5.6E+02 0.012 22.2 11.7 82 263-356 143-224 (226)
440 KOG2011 Sister chromatid cohes 20.3 5.6E+02 0.012 27.8 8.5 130 171-310 299-431 (1048)
441 KOG2022 Nuclear transport rece 20.1 1.1E+03 0.023 25.2 13.7 133 174-315 482-620 (982)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2e-78 Score=515.23 Aligned_cols=387 Identities=53% Similarity=0.810 Sum_probs=356.6
Q ss_pred CCchHhhhhcCC--CCCchHHhhhhhHHHHHHHHHhhhHHHHhhhhc-cccCCCCCccCCCCCchhhhhcCHHHHHHhhc
Q 015537 7 SKADSRRNKYKV--AVDADEGRRRREDNMVEIRKNKREESLQKKRRE-GLQNQQPLANDVNAPGTAKKLENLPVMVAGVW 83 (405)
Q Consensus 7 ~~~~~r~~~~k~--~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 83 (405)
+.++.|+-+||. .+.++|+||+|++.+++|||+||+|.++||||. +.+++..+. . -+..++-...+|.+.+.|.
T Consensus 5 f~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss-~--i~meqq~~~elp~lt~~l~ 81 (526)
T COG5064 5 FVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESS-F--IPMEQQFYSELPQLTQQLF 81 (526)
T ss_pred cchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhc-c--CchhHHhhhhhHHHHHHHh
Confidence 577889999998 578999999999999999999999999999997 333322111 0 0111112235899999999
Q ss_pred CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHH
Q 015537 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI 163 (405)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~ 163 (405)
|+|-+.|+.|+.-+|+++|.+.+|+++.+++.|++|.|++++.......++++|+|+|+|+++++..+++.+++.|++|.
T Consensus 82 SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPl 161 (526)
T COG5064 82 SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPL 161 (526)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHH
Confidence 99999999999999999999999999999999999999999965443789999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC-chhHHHHHHHHHHHhhcCC-CCCChhhh
Q 015537 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSNFCRGK-PQPPFDQV 241 (405)
Q Consensus 164 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~-~~~~~~~a~~~l~~l~~~~-~~~~~~~~ 241 (405)
++++|.+++.+++++++|+|||++++++.+|+.+++.|++++++.++..+. +.++.++++|+|+|||+++ |++....+
T Consensus 162 fiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i 241 (526)
T COG5064 162 FIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI 241 (526)
T ss_pred HHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH
Confidence 999999999999999999999999999999999999999999999996443 6899999999999999998 88999999
Q ss_pred hccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHH
Q 015537 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (405)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 321 (405)
...+|.|.+++.+.|+++..+|||+++||+++..+.++.+++.|+.++|+.+|.+++..++.+|++.+|||++|++.+++
T Consensus 242 sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTq 321 (526)
T COG5064 242 SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQ 321 (526)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLV 401 (405)
Q Consensus 322 ~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n 401 (405)
.++++|+++.+..+|+++ ...+|++|||+|+|+++|+.++++.+++++++|+|+++|+.. ++++||+||||++|
T Consensus 322 viI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-----e~k~kKEACWAisN 395 (526)
T COG5064 322 VIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-----EYKIKKEACWAISN 395 (526)
T ss_pred hheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-----HHHHHHHHHHHHHh
Confidence 999999999999999999 889999999999999999999999999999999999999887 57899999999998
Q ss_pred h
Q 015537 402 T 402 (405)
Q Consensus 402 ~ 402 (405)
.
T Consensus 396 a 396 (526)
T COG5064 396 A 396 (526)
T ss_pred h
Confidence 5
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-74 Score=527.41 Aligned_cols=388 Identities=62% Similarity=0.944 Sum_probs=355.6
Q ss_pred CchHhhhhcCC-CCCchHHhhhhhHHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhhcCHHHHHHhhcCCC
Q 015537 8 KADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSND 86 (405)
Q Consensus 8 ~~~~r~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~ 86 (405)
....|+++||+ +++++|+||||++..+|+||+||+|.++|||+........ .............+.++..+.|++
T Consensus 4 ~~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~S~~ 79 (514)
T KOG0166|consen 4 SSNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLD----ELLSDSQSQASNLELMLAALYSDD 79 (514)
T ss_pred hhHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccc----cccchhHHHhhhhHHHHHHHhCCC
Confidence 34567777877 7999999999999999999999999999999932221111 111111112234789999999999
Q ss_pred hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHH
Q 015537 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (405)
Q Consensus 87 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~ 166 (405)
+..|+.++..++++++.+++|+++.++..|++|.|+++|...+++.++++|+|+|+||++++.++++.+++.|++|.|+.
T Consensus 80 ~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~ 159 (514)
T KOG0166|consen 80 PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ 159 (514)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH
Confidence 99999999999999999989999999999999999999987666999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-CCCChhhhhccH
Q 015537 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPAL 245 (405)
Q Consensus 167 lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l 245 (405)
++.+++..++++|+|+|||++++++.+|+.++..|++.+|+.++..+....++++++|+|+|||+++ |.+.+..+..++
T Consensus 160 Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iL 239 (514)
T KOG0166|consen 160 LLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPIL 239 (514)
T ss_pred HhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999966666799999999999999999 999999999999
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHh
Q 015537 246 PALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE 325 (405)
Q Consensus 246 ~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~ 325 (405)
|.|..++++.|++|+.++||+++||+++.++.++.+++.|+++.|+.+|.+.++.++.+|++++|||++|++.+++.+++
T Consensus 240 p~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~ 319 (514)
T KOG0166|consen 240 PALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN 319 (514)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 326 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
+|+++.|..++..++...+|++|||+|+||++|++++++.+++.|++|.|+++|.+++ .++||||+|||+|+|-
T Consensus 320 ~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e-----f~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 320 SGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE-----FDIRKEAAWAISNLTS 393 (514)
T ss_pred cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc-----hHHHHHHHHHHHhhcc
Confidence 9999999999996547789999999999999999999999999999999999998873 4799999999999873
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-46 Score=339.25 Aligned_cols=320 Identities=26% Similarity=0.395 Sum_probs=284.9
Q ss_pred cCHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (405)
Q Consensus 73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~ 151 (405)
+.+|.++++|.. .++.+|++|+|+|.++++++ .+..+.+++.|.+|.|+.++.+++ ..++++|+|+|+|++.+++.+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence 679999999985 55999999999999999987 788889999999999999999999 999999999999999999999
Q ss_pred HHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhh
Q 015537 152 TKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~-~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~ 230 (405)
|+.+++.|++++|+.++..++. .+..++.|+|+|+|.+..+.-..-.-..+++.|..++ .+.|++++..++|++++|+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998765 7889999999999976522222222334788888888 9999999999999999999
Q ss_pred cCCC-CCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC-CCCcchHHHHHHH
Q 015537 231 RGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRT 308 (405)
Q Consensus 231 ~~~~-~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~ 308 (405)
.+.+ ........|++|.|+.+|.+.++.++..|+++++|++.+++++.+.+++.|+++.|..+|. ++...++..|||+
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 9863 3444445899999999999999999999999999999999999999999999999999998 6666799999999
Q ss_pred HhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcccccch
Q 015537 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIVAFFFMFLHFFF 387 (405)
Q Consensus 309 l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~ 387 (405)
|+||++|+.++++.+++.|++|.|+.+|+++ +.++|++|+|+|+|++. |+++++.+|++.|++++++++|...+.
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~--- 421 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDV--- 421 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCCh---
Confidence 9999999999999999999999999999999 99999999999999997 799999999999999999999965432
Q ss_pred hhhHHHHHHHHHhh
Q 015537 388 GAIIYKLAIWLCLV 401 (405)
Q Consensus 388 ~~~vr~~A~~al~n 401 (405)
++-..+.-+|.|
T Consensus 422 --~ii~v~Ld~l~n 433 (514)
T KOG0166|consen 422 --KIILVALDGLEN 433 (514)
T ss_pred --HHHHHHHHHHHH
Confidence 344444444444
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.6e-45 Score=312.08 Aligned_cols=309 Identities=24% Similarity=0.354 Sum_probs=276.6
Q ss_pred hcCHHHHHHhhc-CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch
Q 015537 72 LENLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (405)
Q Consensus 72 ~~~l~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~ 150 (405)
.+.+|.+++++. .+....+++|+|+|.+++|++ ......+++.|.+|.|+++|.+++ .+++.++.|+|+|++.+++.
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchh
Confidence 356999999995 466788999999999999987 677778999999999999999998 89999999999999999999
Q ss_pred hHHHHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHH
Q 015537 151 HTKVVIDHGAVPIFVKLLYSPS--DDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (405)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~~~--~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~ 227 (405)
+|+.+++.|++++++.++.+.. ..+...+.|+|+|+|... |+--...+ ..+++.|.+++ ...|+++...|+|+++
T Consensus 191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i-sqalpiL~KLi-ys~D~evlvDA~WAiS 268 (526)
T COG5064 191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI-SQALPILAKLI-YSRDPEVLVDACWAIS 268 (526)
T ss_pred HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH-HHHHHHHHHHH-hhcCHHHHHHHHHHHH
Confidence 9999999999999999998754 588999999999999653 22212222 23678888888 8999999999999999
Q ss_pred HhhcCCC-CCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHH
Q 015537 228 NFCRGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL 306 (405)
Q Consensus 228 ~l~~~~~-~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 306 (405)
+|+.+.. ........|+.+.|+++|.+++..++..+++.++|+..+++.+.+.++..|+++.+..+|+++...++..||
T Consensus 269 YlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaC 348 (526)
T COG5064 269 YLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEAC 348 (526)
T ss_pred HhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhh
Confidence 9999962 333334478888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHhCcHHHHHHHHhccc
Q 015537 307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQVIMHVHAFSIIVAFFFMFL 383 (405)
Q Consensus 307 ~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~lL~~~~ 383 (405)
|+|+||.+|+.++++.+++.+++|+|+++|.+. +..++++|||+++|.+.| -|+.++++++.|.+.+|+++|.-.+
T Consensus 349 WTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d 427 (526)
T COG5064 349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD 427 (526)
T ss_pred eeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC
Confidence 999999999999999999999999999999999 999999999999999974 7899999999999999999998776
Q ss_pred cc
Q 015537 384 HF 385 (405)
Q Consensus 384 ~~ 385 (405)
+.
T Consensus 428 Nk 429 (526)
T COG5064 428 NK 429 (526)
T ss_pred cc
Confidence 54
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=325.37 Aligned_cols=324 Identities=19% Similarity=0.175 Sum_probs=277.3
Q ss_pred hcCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537 72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (405)
Q Consensus 72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~ 151 (405)
.+.+|.++++|.++++..|..|+.++.+++... ..+.+.+++.|++|.|+++|.+++++.+|++|+|+|+||+++++++
T Consensus 188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~ 266 (2102)
T PLN03200 188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA 266 (2102)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence 368999999999999999999999998887654 4578889999999999999987654799999999999999999999
Q ss_pred HHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCChh-----------hHHH---HHhcCChHHHHH
Q 015537 152 TKVVIDHGAVPIFVKLLYSPS---------DDVREQAVWALGNIAGDSPR-----------CRDL---VLSQGGLVPLLA 208 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~---------~~i~~~a~~~L~nl~~~~~~-----------~~~~---i~~~~~i~~L~~ 208 (405)
++.+++.|++|.|+.++.+++ ..++++++|+|+|||++.+. .++. ....|++.+++.
T Consensus 267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 999999999999999998654 45699999999999987543 2221 234577888888
Q ss_pred hhhCCCchhHH----HHHHHHHHHhhcCC-CCCChhh-------------------hhccHHHHHhhhcCCChHHHHHHH
Q 015537 209 QLNGQPKLSML----RNATWTLSNFCRGK-PQPPFDQ-------------------VSPALPALAHLIHSNDDEVLTDAC 264 (405)
Q Consensus 209 ~l~~~~~~~~~----~~a~~~l~~l~~~~-~~~~~~~-------------------~~~~l~~L~~ll~~~d~~v~~~a~ 264 (405)
.+ +.++.... ..++|+|.+|++++ |...... ..++++.|+.|+...+.+++.+++
T Consensus 347 l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av 425 (2102)
T PLN03200 347 VF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI 425 (2102)
T ss_pred hc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence 88 44443333 36789999999987 3331211 135678889999999999999999
Q ss_pred HHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhH
Q 015537 265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI 344 (405)
Q Consensus 265 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v 344 (405)
|+|.+++.++.+..+.+.+.|+++.|+.+|.+++..++..|+++|+|++.++++++..+++.|++|.|+++|.++ ++.+
T Consensus 426 ~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~i 504 (2102)
T PLN03200 426 RALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKA 504 (2102)
T ss_pred HHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH-HhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 345 KKEACWTVSNITAGNREQIQVIM-HVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
+++|+|+|+|++.++++ ++.++ +.|++|+|+++|.+++ +.+|++|+|+|.|+++
T Consensus 505 qeeAawAL~NLa~~~~q-ir~iV~~aGAIppLV~LL~sgd-----~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 505 KEDSATVLWNLCCHSED-IRACVESAGAVPALLWLLKNGG-----PKGQEIAAKTLTKLVR 559 (2102)
T ss_pred HHHHHHHHHHHhCCcHH-HHHHHHHCCCHHHHHHHHhCCC-----HHHHHHHHHHHHHHHh
Confidence 99999999999886544 56655 7899999999998763 3699999999999864
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=7.8e-35 Score=304.30 Aligned_cols=322 Identities=17% Similarity=0.107 Sum_probs=289.0
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
+.++.|+.+|.+.+.+.|..+++.|..++.++ ...++.+++.|++|.|+++|.+++ +.+|..|+|+|+|++.++++++
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 56788999999999999999999999997665 677889999999999999999988 8999999999999999989999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
..+++.|+||.|+.+|.+++..+++.|+|+|+|++.+++..+..+.+.|++++|+.+| ++.+..++..++|+|.+|+.+
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998888888888899999999999 777899999999999999753
Q ss_pred CCCC---------------------------------C-----hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC
Q 015537 233 KPQP---------------------------------P-----FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (405)
Q Consensus 233 ~~~~---------------------------------~-----~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (405)
.... . .....++++.|+.+++++++.++..|+|+|.+++.+.
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 2110 0 0012579999999999999999999999999999999
Q ss_pred hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 015537 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (405)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~ 353 (405)
.+..+.++..|+++.++.+|++.+.+++..++|+|+|++.+.. .+...+++.|++++|++++.++ +..++..|+-+|.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa 719 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA 719 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997444 5566789999999999999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 354 NITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
|++... +....+.+.|+++.|+++|.++.+ ..|++|+|||.++|-
T Consensus 720 nLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~-----~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 720 NLLSDP-EVAAEALAEDIILPLTRVLREGTL-----EGKRNAARALAQLLK 764 (2102)
T ss_pred HHHcCc-hHHHHHHhcCcHHHHHHHHHhCCh-----HHHHHHHHHHHHHHh
Confidence 998754 446777889999999999998854 589999999999984
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6e-29 Score=214.73 Aligned_cols=320 Identities=18% Similarity=0.217 Sum_probs=279.5
Q ss_pred hhcCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch
Q 015537 71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (405)
Q Consensus 71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~ 150 (405)
.+.++..|+..+.++...+|..++.++.+++.. +.....+...|++.++..+-++.+ ..+|..++.+|.|++.. .+
T Consensus 124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmThs-~E 199 (550)
T KOG4224|consen 124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTHS-RE 199 (550)
T ss_pred eccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhhh-hh
Confidence 456788888888888889999999999999876 456667889999999999777777 89999999999999887 89
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--ChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLNGQPKLSMLRNATWTLSN 228 (405)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~--~i~~L~~~l~~~~~~~~~~~a~~~l~~ 228 (405)
+|+.++..|++|.|+.++++.++++++.+..+++||+.+.. .|..+.+.+ .++.|++++ .++++.++-.+..+|.+
T Consensus 200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998766 677788877 899999999 88999999999999999
Q ss_pred hhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCc-chHHHHHH
Q 015537 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP-SVLIPALR 307 (405)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~ 307 (405)
++............|.+|.++++++++-.........++.+++-+.-. ...+++.|++..|+.+|..++. +++..|..
T Consensus 278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN-e~lI~dagfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN-EVLIADAGFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc-ccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence 998754444444589999999999988877888888899998865433 3458899999999999987765 59999999
Q ss_pred HHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccch
Q 015537 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFF 387 (405)
Q Consensus 308 ~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~ 387 (405)
+|.|++.........+.+.|.+|.+..++.++ +-.++.+...+++.++-.+ .....+.+.|++|.|+..+.+.+.
T Consensus 357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s~--- 431 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALND-NDKEALLDSGIIPILIPWTGSESE--- 431 (550)
T ss_pred HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhcc-ccHHHHhhcCCcceeecccCccch---
Confidence 99999998888889999999999999999999 8999999998999886543 336889999999999998876544
Q ss_pred hhhHHHHHHHHHhhhcc
Q 015537 388 GAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 388 ~~~vr~~A~~al~n~~~ 404 (405)
+||.+|+-||+|||-
T Consensus 432 --Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 432 --EVRGNAAAALINLSS 446 (550)
T ss_pred --hhcccHHHHHHhhhh
Confidence 499999999999984
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.1e-27 Score=201.64 Aligned_cols=318 Identities=19% Similarity=0.271 Sum_probs=275.4
Q ss_pred hhcCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch
Q 015537 71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (405)
Q Consensus 71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~ 150 (405)
..+++..+.++-++.+..+|..++.+|.++... .+..+.++..|++|.|+.++++++ +++|+.++.+++||+-+ ..
T Consensus 165 ~sGaL~pltrLakskdirvqrnatgaLlnmThs--~EnRr~LV~aG~lpvLVsll~s~d-~dvqyycttaisnIaVd-~~ 240 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTHS--RENRRVLVHAGGLPVLVSLLKSGD-LDVQYYCTTAISNIAVD-RR 240 (550)
T ss_pred hccchhhhHhhcccchhhHHHHHHHHHHHhhhh--hhhhhhhhccCCchhhhhhhccCC-hhHHHHHHHHhhhhhhh-HH
Confidence 346788999988889999999999999999653 578889999999999999999999 99999999999999987 77
Q ss_pred hHHHHHhCC--ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537 151 HTKVVIDHG--AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (405)
Q Consensus 151 ~~~~~~~~g--~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~ 228 (405)
.|+.+.+.+ .+|.|+.++.++++.++.+|..+|+|++.+.. ++..+.+.|.+|.++.++ +++..........|+.|
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELL-QSPMGPLILASVACIRN 318 (550)
T ss_pred HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhh
Confidence 888899888 99999999999999999999999999998877 566778999999999999 77777777778889999
Q ss_pred hhcCCCCCChhhhhccHHHHHhhhcCCC-hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHH
Q 015537 229 FCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR 307 (405)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 307 (405)
++-++-+.......|++..|+.+|...| .+++..|..+|.+|+..+......+.++|.+|.++.++.+...+++...-.
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisa 398 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISA 398 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHH
Confidence 9998755556666899999999999876 559999999999999888888889999999999999999999999998888
Q ss_pred HHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH------hCcHHHHHHHHhc
Q 015537 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH------VHAFSIIVAFFFM 381 (405)
Q Consensus 308 ~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~------~~~i~~L~~lL~~ 381 (405)
+++-++- ++.....+.+.|++|.|+.+..+. +.+++-.|+-+|.|++.. .++...+++ .|+--.|++++.+
T Consensus 399 c~a~Lal-~d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~-v~~YarviEawd~P~~gi~g~L~Rfl~S 475 (550)
T KOG4224|consen 399 CIAQLAL-NDNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSD-VEHYARVIEAWDHPVQGIQGRLARFLAS 475 (550)
T ss_pred HHHHHHh-ccccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhh-hHHHHHHHHHhcCcchhHHHHHHHHHhh
Confidence 8888875 455677899999999999999999 999999999999999763 333333332 4677788998887
Q ss_pred ccccchhhhHHHHHHHHHhhh
Q 015537 382 FLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 382 ~~~~~~~~~vr~~A~~al~n~ 402 (405)
. +..++--|.|.|..+
T Consensus 476 ~-----~~tf~hia~wTI~qL 491 (550)
T KOG4224|consen 476 H-----ELTFRHIARWTIQQL 491 (550)
T ss_pred h-----HHHHHHHHHHHHHHH
Confidence 6 345889999988654
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.89 E-value=1.3e-20 Score=183.56 Aligned_cols=313 Identities=18% Similarity=0.213 Sum_probs=252.6
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
+.++.|+..|.+++.++...++..|.++... .++...+.+.|+++.|++++.+++ ..++..++++|.|++.+ ++.|
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd-~~~R 365 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSFD-PELR 365 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcC-HHHH
Confidence 5789999999999999999999999999544 567889999999999999999988 89999999999999998 8889
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
..+++.|++|.|+.+|.++ ..+..++.+|+|++.+.. ++.++...++++.+++++...+++.+...+++.+.|++.+
T Consensus 366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 9999999999999999854 566779999999998765 8899999999999999986766666666666666666554
Q ss_pred CCCCC-------------------------------------hhhhhccHHHHHhhhcC-CChHHHHHHHHHHHHhccCC
Q 015537 233 KPQPP-------------------------------------FDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGT 274 (405)
Q Consensus 233 ~~~~~-------------------------------------~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~ 274 (405)
..... .....+.+..|+..+.. ++++...+++.+|+|++..+
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ 522 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPD 522 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC
Confidence 32111 11122333334444444 46889999999999998776
Q ss_pred hhHHHHHHhcCChHHHHHhcCCC--CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHHH
Q 015537 275 NDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWT 351 (405)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~~~ 351 (405)
.+..+.+.+.+++|.+..+|..+ ++++...++..+|.++. ++.....+.+.|+++.|+.+|...+ |.++.-..+|+
T Consensus 523 ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~ 601 (708)
T PF05804_consen 523 LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYV 601 (708)
T ss_pred cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHH
Confidence 66666666779999999999654 45789999999999985 5667777889999999999998763 67899999999
Q ss_pred HHHHhcCCHHHHHHHH-HhCcHHHHHHHHhcccccchhhhHHHHHHHHH
Q 015537 352 VSNITAGNREQIQVIM-HVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLC 399 (405)
Q Consensus 352 L~nl~~~~~~~~~~l~-~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al 399 (405)
+.++..+.+ .+..++ +.+++..|++++.... . .||+-|--+|
T Consensus 602 f~~ll~h~~-tr~~ll~~~~~~~ylidL~~d~N-~----~ir~~~d~~L 644 (708)
T PF05804_consen 602 FYQLLFHEE-TREVLLKETEIPAYLIDLMHDKN-A----EIRKVCDNAL 644 (708)
T ss_pred HHHHHcChH-HHHHHHhccchHHHHHHHhcCCC-H----HHHHHHHHHH
Confidence 999988754 466666 5899999999996653 3 5898776665
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.88 E-value=9.4e-20 Score=177.54 Aligned_cols=310 Identities=16% Similarity=0.132 Sum_probs=248.1
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 015537 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID 157 (405)
Q Consensus 78 l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~ 157 (405)
+-..++.. ..+..-+...|.+++.. ......+.+.|+++.|+++|++++ .++...++++|.+++.. .+++..+.+
T Consensus 255 ~~~l~~kQ-eqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~-~ENK~~m~~ 329 (708)
T PF05804_consen 255 LQTLIRKQ-EQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIF-KENKDEMAE 329 (708)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 33344333 34555677788888642 455567889999999999999988 89999999999999988 789999999
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCC
Q 015537 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237 (405)
Q Consensus 158 ~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~ 237 (405)
.|+++.|.+++.+++.+++..++++|.|++.+.. .|..++..|.++.|+.+| .+ +..+..++.+|+++|..+....
T Consensus 330 ~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL-~d--~~~~~val~iLy~LS~dd~~r~ 405 (708)
T PF05804_consen 330 SGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELL-KD--PNFREVALKILYNLSMDDEARS 405 (708)
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHh-CC--CchHHHHHHHHHHhccCHhhHH
Confidence 9999999999999999999999999999997765 789999999999999999 33 3456778999999999865444
Q ss_pred hhhhhccHHHHHhhhc-CCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCC
Q 015537 238 FDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD 316 (405)
Q Consensus 238 ~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 316 (405)
.....+++|.++.++. .+++.+..++++.+.|++... ...+.+.+.|+++.|+...-..... -.+..|.|++.++
T Consensus 406 ~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 406 MFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHD 481 (708)
T ss_pred HHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcC
Confidence 4455789999988764 456778888899999998654 5568888889999999887543332 2456889999887
Q ss_pred hhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHH
Q 015537 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAI 396 (405)
Q Consensus 317 ~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~ 396 (405)
......+. +++..|+.++..+.++...-++..+|+|++..+.+-.+.+-+.+++|.|.++|..+..+ +++.-+++
T Consensus 482 ~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~---dDl~LE~V 556 (708)
T PF05804_consen 482 GPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASE---DDLLLEVV 556 (708)
T ss_pred chHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCC---hHHHHHHH
Confidence 54333333 47888888888876889999999999999876555445555789999999999877555 48999999
Q ss_pred HHHhhhccC
Q 015537 397 WLCLVTCCE 405 (405)
Q Consensus 397 ~al~n~~~~ 405 (405)
.++|.+|+.
T Consensus 557 i~~gtla~d 565 (708)
T PF05804_consen 557 ILLGTLASD 565 (708)
T ss_pred HHHHHHHCC
Confidence 999998873
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.79 E-value=2.3e-17 Score=157.44 Aligned_cols=317 Identities=22% Similarity=0.265 Sum_probs=241.7
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch--h
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE--H 151 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~--~ 151 (405)
.+|+.+.+|.+.++.+|-.|...+..+..++ +.....+-+.|+|+.|+.+|.+.+ .+++..|+|+|.|+..++.. +
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence 6899999999999999999999999886554 566667778999999999999999 99999999999999998766 8
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhC-------------CCchh
Q 015537 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-------------QPKLS 217 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~-------------~~~~~ 217 (405)
.-.+.+.++|+.++.+|+. .|.+++++...+|+||++.+. ++..++. ..+..|...+.. ..+.+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHHH-HHHHHHHHhhcccccccCCCCcccccccce
Confidence 8889999999999999997 799999999999999998744 5555443 356666555421 11367
Q ss_pred HHHHHHHHHHHhhcCCCC--CChhhhhccHHHHHhhhc------------------------------------------
Q 015537 218 MLRNATWTLSNFCRGKPQ--PPFDQVSPALPALAHLIH------------------------------------------ 253 (405)
Q Consensus 218 ~~~~a~~~l~~l~~~~~~--~~~~~~~~~l~~L~~ll~------------------------------------------ 253 (405)
+..+++.||.|++..... .......|++..|+..++
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 889999999999874311 111111333333333222
Q ss_pred ------------------------------------------------------------CCChHHHHHHHHHHHHhccC
Q 015537 254 ------------------------------------------------------------SNDDEVLTDACWALSYLSDG 273 (405)
Q Consensus 254 ------------------------------------------------------------~~d~~v~~~a~~~l~~l~~~ 273 (405)
+.++.+.+.++.+|-|++.+
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 12334555566666666654
Q ss_pred Ch----hHHHHH-HhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCc-----hh
Q 015537 274 TN----DKIQAV-IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK-----KS 343 (405)
Q Consensus 274 ~~----~~~~~~-~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~-----~~ 343 (405)
.. .....+ .+..+++.++.+|..+++.+...++.+|.|++.+. ..+.++..++++-|++.|..+.. .+
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rnk~ligk~a~~~lv~~Lp~~~~~~~~sed 627 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RNKELIGKYAIPDLVRCLPGSGPSTSLSED 627 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hhhhhhhcchHHHHHHhCcCCCCCcCchHH
Confidence 32 222223 55678899999999999999999999999998543 34556778899999999987633 68
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537 344 IKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCL 400 (405)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~ 400 (405)
+...+|.+|.|+.+.+......+.+.+.++.|+-+.++..+ +++-+.|.-.+-
T Consensus 628 tv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S----~k~~kaAs~vL~ 680 (717)
T KOG1048|consen 628 TVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHS----PKEFKAASSVLD 680 (717)
T ss_pred HHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCC----HHHHHHHHHHHH
Confidence 88999999999999999999999999999999999888433 366666665554
No 12
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.9e-15 Score=130.31 Aligned_cols=309 Identities=12% Similarity=0.109 Sum_probs=242.6
Q ss_pred CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChH
Q 015537 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162 (405)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~-~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~ 162 (405)
+++....++++.++..+..+. ..+.+..++..++.+|... ++.++....+.++..-|-...-+++.+++.++.+
T Consensus 118 ~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 456677777888877765332 2466777899999998642 3378888888888888888788999999999999
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---------hhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 163 IFVKLLYS-PSDDVREQAVWALGNIAGDSP---------RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 163 ~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~---------~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
.+...|.. ...++...+.|++.-+..++. ....++...|++..|+..+.-..++.+...++.+|..|+-.
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99977765 445688889999999885543 34466778888999999997777899999999999999887
Q ss_pred CCCCChhhhhccHHHHHhhhcCC-ChH---HHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc--CCCCcchHHHHH
Q 015537 233 KPQPPFDQVSPALPALAHLIHSN-DDE---VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL--MHPSPSVLIPAL 306 (405)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~-d~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~v~~~a~ 306 (405)
+.-.......|++..|+.++.+. +.. ....++..|..|+ ++++....+++.|+.+.++.++ .+++|.+...++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 55455555689999999999774 333 4466777888887 5566678899999999999998 456889999999
Q ss_pred HHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhccccc
Q 015537 307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHF 385 (405)
Q Consensus 307 ~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~ 385 (405)
.+++-++-..+++...+++.|+-...+..+... ....+++.+||.+.||+..+.++...+++.|+=..+.....+. +
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h--~ 429 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANH--E 429 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcC--c
Confidence 999999998888888999999999999988854 3568999999999999999999888888776655554444332 2
Q ss_pred chhhhHHHHHHHHHhhhcc
Q 015537 386 FFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 386 ~~~~~vr~~A~~al~n~~~ 404 (405)
..+..|.-||.-+=|
T Consensus 430 ----tce~~akaALRDLGc 444 (461)
T KOG4199|consen 430 ----TCEAAAKAALRDLGC 444 (461)
T ss_pred ----cHHHHHHHHHHhcCc
Confidence 567777767665544
No 13
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.7e-16 Score=148.90 Aligned_cols=262 Identities=22% Similarity=0.353 Sum_probs=229.2
Q ss_pred CHHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 74 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
.+..|++.|+.. |+..|.+|+..+..+++....+....+--.-++|.|+.+|+..++.++...|+++|++++.--|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 368888888875 9999999999999999877555555454556799999999998889999999999999999999999
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 153 KVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
..+++.++||.|+.-|.. .-.++.++++.+|-.|+...+ ..+++.|++-..+.+| ..-...+++.|+.+.+|+|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999986655 678999999999999998766 4678999999999988 66688999999999999999
Q ss_pred CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC---ChhHHHHHHhcCChHHHHHhcCCCC----cchHHH
Q 015537 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHPS----PSVLIP 304 (405)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~----~~v~~~ 304 (405)
.-+...+..+...+|.|..+|++.|.+..+.+|-++.+++++ .++..+.+...|++....++|.-.. ..+...
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 988888888899999999999999999999999999999865 5678888999999999999996543 356777
Q ss_pred HHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC
Q 015537 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN 339 (405)
Q Consensus 305 a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~ 339 (405)
.++.+.-++++.+.....+...++...|..+|...
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 88999999999888888888889999999988743
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.3e-14 Score=125.21 Aligned_cols=280 Identities=15% Similarity=0.137 Sum_probs=224.4
Q ss_pred hcCcHHHHHHHh---cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 015537 114 RSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAG 188 (405)
Q Consensus 114 ~~g~l~~Li~lL---~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~ 188 (405)
..|..+.++.++ .+++ ..+...++.+|..+..+.|+ +.+..+...++.+|.. ++.++....+.++..-|.
T Consensus 102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~ 176 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI 176 (461)
T ss_pred cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 456666555444 3444 67888899999888887665 5567789999998865 577888888888888888
Q ss_pred CChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCC-Chh---------hhhccHHHHHhhhcC-CCh
Q 015537 189 DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFD---------QVSPALPALAHLIHS-NDD 257 (405)
Q Consensus 189 ~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~---------~~~~~l~~L~~ll~~-~d~ 257 (405)
..+.+|+.+++.++++.+...|.......+.+.++|++..|...+... .+. .-.+++..|++.++- -||
T Consensus 177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 888899999999999999988866666689999999999998765321 111 114567788888865 379
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC-CCcchH---HHHHHHHhHhhcCChhhHHHHHhcCchHHHH
Q 015537 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVL---IPALRTVGNIVTGDDMQTQCVIEYQALPCLL 333 (405)
Q Consensus 258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~---~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~ 333 (405)
.+..+.+.+|..|+- .++..+.+.+.|++..|+.++.+ ++...+ ..++..|..++ |++.....+++.|+++.++
T Consensus 257 ~~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii 334 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKII 334 (461)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHH
Confidence 999999999999985 44667789999999999999976 444444 55666676665 7888899999999999999
Q ss_pred HhhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 334 NLLSG-NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 334 ~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
.++.. ..+|.|..+++.+++-++-.+|++....++.|+-...++.|+.... ...|+++|+|+|.|..
T Consensus 335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~---~a~vQrnac~~IRNiv 402 (461)
T KOG4199|consen 335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV---AAQVQRNACNMIRNIV 402 (461)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH---HHHHHHHHHHHHHHHH
Confidence 98763 3489999999999999999999999999999999999999987643 4689999999999974
No 15
>PRK09687 putative lyase; Provisional
Probab=99.71 E-value=5.1e-15 Score=131.52 Aligned_cols=255 Identities=15% Similarity=0.103 Sum_probs=199.0
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
.++.|+..|.+.+..++..|+..|..+-. ..+++.+..++.+++ +.+|..|+|+|+.+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence 46889999999999999999999987732 234778888888888 99999999999998653211
Q ss_pred HHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 154 VVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 154 ~~~~~g~i~~L~~l-L~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
...+++.|..+ ++++++.|+..++.+||+++...... ...++..+...+ .+++..|+..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence 11357788776 67789999999999999996443211 111344555666 77799999999999976643
Q ss_pred CCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (405)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl 312 (405)
...++.|+.++.++|+.|+..++.+|+.+...++ .+++.|+..|.+.++.|+..|+++||.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 2588999999999999999999999999843333 2357899999999999999999999996
Q ss_pred hcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHH
Q 015537 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIY 392 (405)
Q Consensus 313 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr 392 (405)
- ++ ..+|.|++.+.++ + ++..++.+|+++. ++ ..+|.|..++....+. .|+
T Consensus 220 ~--~~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig--~~---------~a~p~L~~l~~~~~d~----~v~ 270 (280)
T PRK09687 220 K--DK---------RVLSVLIKELKKG-T--VGDLIIEAAGELG--DK---------TLLPVLDTLLYKFDDN----EII 270 (280)
T ss_pred C--Ch---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcC--CH---------hHHHHHHHHHhhCCCh----hHH
Confidence 3 22 4688999999987 4 6789999999993 33 3578888888755444 799
Q ss_pred HHHHHHHhh
Q 015537 393 KLAIWLCLV 401 (405)
Q Consensus 393 ~~A~~al~n 401 (405)
..|.|+|..
T Consensus 271 ~~a~~a~~~ 279 (280)
T PRK09687 271 TKAIDKLKR 279 (280)
T ss_pred HHHHHHHhc
Confidence 999999853
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.69 E-value=6e-16 Score=154.27 Aligned_cols=266 Identities=19% Similarity=0.171 Sum_probs=223.6
Q ss_pred HHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-----------CHHHHHHHHHHHHHHhcCCchhHHHHHhC-C
Q 015537 92 ECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-----------YPQLQFEAAWALTNIASGTSEHTKVVIDH-G 159 (405)
Q Consensus 92 ~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-----------~~~~~~~a~~~L~ni~~~~~~~~~~~~~~-g 159 (405)
.|+..|.++ +++ .+....+-+.|++..+-+||.-+. .-.++.+|..+|+|+++++..++..+... |
T Consensus 317 aA~~~lMK~-SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 317 AALCTLMKL-SFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHh-hcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 567777777 554 688888999999998888875321 24689999999999999988777766554 8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC--CCC
Q 015537 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--PQP 236 (405)
Q Consensus 160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~--~~~ 236 (405)
++..++..|.+...++.+..+.+|.||+-. +...+..+-+.|.+..|...-.....+..++.++.+||||+-+. ...
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA 474 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA 474 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence 999999999999999999999999999943 23355667788889999888767888888999999999999887 556
Q ss_pred ChhhhhccHHHHHhhhcCC----ChHHHHHHHHHHHHhc---cCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHH
Q 015537 237 PFDQVSPALPALAHLIHSN----DDEVLTDACWALSYLS---DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (405)
Q Consensus 237 ~~~~~~~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~---~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l 309 (405)
.+..+.|++.+|+.+|... --.|++.+-.+|.|++ ...+++.+.+.+.+.+..|++.|++.+-.+...+|.+|
T Consensus 475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence 6777899999999999754 2456676666666654 45677788899999999999999999999999999999
Q ss_pred hHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 015537 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (405)
Q Consensus 310 ~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 360 (405)
+||...+++..+.+++.|.++.|..++.+. +..+...++-+|.|+...-|
T Consensus 555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCCc
Confidence 999999999999999999999999999999 99999999999999987543
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.69 E-value=5.5e-14 Score=135.74 Aligned_cols=315 Identities=18% Similarity=0.165 Sum_probs=240.3
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 015537 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (405)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~ 155 (405)
+.++..|.+.+.+....++.+|.+++... ....+ ..++.+.|...|.+++ +.++..+++.|++++.++......+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~---~~~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL---SPDSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc---CHHHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 44788888888888888889999998643 22222 5677899999999998 9999999999999999877778888
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC
Q 015537 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235 (405)
Q Consensus 156 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~ 235 (405)
.+.++++.++.++.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++...+.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence 89999999999999999999999999999999877654 5566777888888888 555777888899999999987633
Q ss_pred C-ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCc-----chH-HHHHHH
Q 015537 236 P-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP-----SVL-IPALRT 308 (405)
Q Consensus 236 ~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-----~v~-~~a~~~ 308 (405)
. ......|+++.++..+.++|.-++.+++..+..|+. .+...+.+.+.|+++.|..++.+.+. .+. ...+..
T Consensus 194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 2 233337899999999999999999999999999998 66678889999999999999965422 223 334477
Q ss_pred HhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH-HH-hCcHHHHHHHHhcccccc
Q 015537 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVI-MH-VHAFSIIVAFFFMFLHFF 386 (405)
Q Consensus 309 l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~-~~~i~~L~~lL~~~~~~~ 386 (405)
.|+++...+....... ..++..+..++.+. ++..+..|.-++|.++. +.+..+.+ .. .+.++..+.........
T Consensus 273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~- 348 (503)
T PF10508_consen 273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKS- 348 (503)
T ss_pred HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcC-
Confidence 7888875433222111 34677778888888 99999999999999974 45555555 33 33444444443332222
Q ss_pred hhhhHHHHHHHHHhhh
Q 015537 387 FGAIIYKLAIWLCLVT 402 (405)
Q Consensus 387 ~~~~vr~~A~~al~n~ 402 (405)
...++|..+..+++++
T Consensus 349 ~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 349 GSTELKLRALHALASI 364 (503)
T ss_pred CchHHHHHHHHHHHHH
Confidence 1235888888888876
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.68 E-value=9.9e-14 Score=133.99 Aligned_cols=319 Identities=18% Similarity=0.201 Sum_probs=241.5
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
..+.+...|.++++.++..+++.+.+++... ....+.+.+.++++.++.++.+++ ..+...|+.+|.+++.. +...+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~d-~~Va~~A~~~L~~l~~~-~~~~~ 154 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDPD-LSVAKAAIKALKKLASH-PEGLE 154 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCCc-HHHHHHHHHHHHHHhCC-chhHH
Confidence 3577788999999999999999999987543 444666778999999999999998 89999999999999987 55666
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
.+++.+.++.|..++..++..++..+..++.+++..++.....+...|.++.++..+ ++.|.-++.+++.++..|+..+
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL-~~dDiLvqlnalell~~La~~~ 233 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL-DSDDILVQLNALELLSELAETP 233 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh-cCccHHHHHHHHHHHHHHHcCh
Confidence 788888899999999988889999999999999999999999999999999999999 6699999999999999999965
Q ss_pred CCCChhhhhccHHHHHhhhcCC--Ch---H-HHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHH
Q 015537 234 PQPPFDQVSPALPALAHLIHSN--DD---E-VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR 307 (405)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~--d~---~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 307 (405)
.......-.|+++.|..++... |+ . .....+...++++..++..+.... ..++..+..++.+.++..+..|+.
T Consensus 234 ~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~d 312 (503)
T PF10508_consen 234 HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFD 312 (503)
T ss_pred hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHH
Confidence 5555555589999999999754 33 1 223334666777764443322111 245667777888999999999999
Q ss_pred HHhHhhcCChhhHHHH-HhcC-----chHHHHHhhcCCCchhHHHHHHHHHHHHhcC----CHHHHHHH-------HHhC
Q 015537 308 TVGNIVTGDDMQTQCV-IEYQ-----ALPCLLNLLSGNYKKSIKKEACWTVSNITAG----NREQIQVI-------MHVH 370 (405)
Q Consensus 308 ~l~nl~~~~~~~~~~~-~~~g-----~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~----~~~~~~~l-------~~~~ 370 (405)
++|.|++.. +....+ ...| ++..+.....++ ...+|..+.-+++++... ..+.+..+ ...+
T Consensus 313 tlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~-~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~ 390 (503)
T PF10508_consen 313 TLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSG-STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGS 390 (503)
T ss_pred HHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCC
Confidence 999998544 444444 3332 455555555566 778999999999999542 12222121 1223
Q ss_pred cHH-HHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 371 AFS-IIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 371 ~i~-~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
-.. .++.+++.+. |++|-.|.-.|...|.
T Consensus 391 ~~~~~l~~~~~qPF-----~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 391 PLSNLLMSLLKQPF-----PELRCAAYRLLQALAA 420 (503)
T ss_pred chHHHHHHHhcCCc-----hHHHHHHHHHHHHHhc
Confidence 333 5566665442 4699999888877764
No 19
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.66 E-value=8.1e-15 Score=130.36 Aligned_cols=314 Identities=13% Similarity=0.061 Sum_probs=221.8
Q ss_pred CChHHHHHHHHHHHHhhccC--CCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChH
Q 015537 85 NDSGVQYECTTQFRKLLSIE--RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162 (405)
Q Consensus 85 ~~~~~~~~a~~~l~~l~s~~--~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~ 162 (405)
.+..+...+..++.+....+ ++...+.-+++++++.|.+..++++ .++..++.++|+|+|.++.+.|..+.+.|+-+
T Consensus 54 ~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 54 ASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred ccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 34455666666676664221 1111223356778888888888886 79999999999999999999999999999988
Q ss_pred HHHHhhCC----C---CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh-CCCchhHHHHHHHHHHHhhcCCC
Q 015537 163 IFVKLLYS----P---SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKP 234 (405)
Q Consensus 163 ~L~~lL~~----~---~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~-~~~~~~~~~~a~~~l~~l~~~~~ 234 (405)
.++.+|+. + +.+....+...|.|..-++...+..+++.|+++.|...+- ..++....+.....+.|+.+-..
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 88888875 2 3467778889999999999999999999999999988873 34455555554444444433211
Q ss_pred C--CChhhhhccHHHHHhhhcC-CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC-CCc-------chHH
Q 015537 235 Q--PPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSP-------SVLI 303 (405)
Q Consensus 235 ~--~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~-------~v~~ 303 (405)
. .++.....+.-.+++++.+ -.+++..-++..+.+.++++.-.. .+.+.|.+..+++++.. ++. ....
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl-~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k 291 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKL-SLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFK 291 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceee-ehhhcchHHHHHHHHHhcccccchHHHHHHHH
Confidence 1 1111123344445555543 356677778888888887665443 47888999999999854 221 2233
Q ss_pred HHHHHHhHhhcCChhhHHHHHhcC-chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcc
Q 015537 304 PALRTVGNIVTGDDMQTQCVIEYQ-ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMF 382 (405)
Q Consensus 304 ~a~~~l~nl~~~~~~~~~~~~~~g-~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~ 382 (405)
.++..+.-+..|++. .+.+...+ ++..+..++.+. +......+..+|+|+++.+.. ..++++.|.+..|+++|...
T Consensus 292 ~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~-ci~~v~~~~~nkL~~~l~~~ 368 (604)
T KOG4500|consen 292 RIAELDVLLLTGDES-MQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDI-CIQLVQKDFLNKLISCLMQE 368 (604)
T ss_pred hhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHHHHHHh
Confidence 344444455566654 44455555 999999999999 999999999999999876554 67889999999999999764
Q ss_pred cccchhhhHHHHHHHHHhhhc
Q 015537 383 LHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 383 ~~~~~~~~vr~~A~~al~n~~ 403 (405)
........++-.++-||.|+-
T Consensus 369 ~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 369 KDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred cCCCccchhHHHHHHHHHhcc
Confidence 444334455667888888873
No 20
>PRK09687 putative lyase; Provisional
Probab=99.66 E-value=1.2e-14 Score=129.10 Aligned_cols=225 Identities=12% Similarity=0.069 Sum_probs=178.6
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (405)
-++.|..+|.+.+ ..++..|+++|..+-.. .+++.+..++.++++.++..++|+|+.|-.....
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGGQ-----------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCcc-----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 4788999998888 89999999999987542 4678888899999999999999999998543211
Q ss_pred HHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChh
Q 015537 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (405)
Q Consensus 197 i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (405)
....++.|..++.+++++.|+..++.+|.+++...+.. ...+++.+...+.++++.|+..++++|+.+.. +
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~- 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E- 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence 11245677777668899999999999999997653212 12355667777888899999999999987642 2
Q ss_pred HHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537 277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (405)
Q Consensus 277 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (405)
..++.|+.+|.++++.++..|+.+||.+..+++ .+++.|+.++.+. ++.||..|.|+|+.+
T Consensus 159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~- 219 (280)
T PRK09687 159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALR- 219 (280)
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHcc-
Confidence 246899999999999999999999999943333 3567789999988 999999999999997
Q ss_pred cCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537 357 AGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 357 ~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
+++ .++|.|+..|... .++..|+.|||++
T Consensus 220 -~~~---------~av~~Li~~L~~~-------~~~~~a~~ALg~i 248 (280)
T PRK09687 220 -KDK---------RVLSVLIKELKKG-------TVGDLIIEAAGEL 248 (280)
T ss_pred -CCh---------hHHHHHHHHHcCC-------chHHHHHHHHHhc
Confidence 233 4578888888764 4788999999876
No 21
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.66 E-value=2.5e-14 Score=124.26 Aligned_cols=197 Identities=19% Similarity=0.236 Sum_probs=164.1
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 015537 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191 (405)
Q Consensus 112 ~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~ 191 (405)
+++.+-++.|+.+|+...+|.++..|+.+++|.+.. +..+..+.+.|+++.+..+|.++++.+++.|+++|.|++.+.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 356677899999999776699999999999998776 8899999999999999999999999999999999999997766
Q ss_pred hhHHHHHhcCChHHHHHhhhCC-CchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHh
Q 015537 192 RCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270 (405)
Q Consensus 192 ~~~~~i~~~~~i~~L~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l 270 (405)
.+..+.. .+..++...... -+..++..++.+|.+|+..+.. ...+.+.+|.++.+|.+++..++..++++|.+|
T Consensus 87 -n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 -NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred -hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 4455433 466666655343 4788999999999999876422 233467899999999999999999999999999
Q ss_pred ccCChhHHHHHHhcCChHHHHHhcCCC-CcchHHHHHHHHhHhhcC
Q 015537 271 SDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTG 315 (405)
Q Consensus 271 ~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~l~nl~~~ 315 (405)
+... .....++..+++..++.++... +.++...++..+.||..+
T Consensus 162 S~np-~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SENP-DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred ccCH-HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9644 5567788999999999999765 678888999999999643
No 22
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.63 E-value=3.3e-14 Score=136.07 Aligned_cols=282 Identities=19% Similarity=0.185 Sum_probs=220.4
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh--hH
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--CR 194 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~--~~ 194 (405)
-+|..+.+|.+.+ +.+|..|+.-+..+|.++.+.+..+.+.|+|+.|+.+|.+.+.+|+.+++|+|.||...... .+
T Consensus 234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 3788899999888 89999999999999999999999999999999999999999999999999999999966544 67
Q ss_pred HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC--------------CChHHH
Q 015537 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS--------------NDDEVL 260 (405)
Q Consensus 195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~--------------~d~~v~ 260 (405)
-.+.+.++++.++.+|....|.++++.++.+|+||+.++ ......+...++.|..-+-. .+.++.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 788899999999999977789999999999999999983 34444455666665543311 135678
Q ss_pred HHHHHHHHHhccCChhHHHHHHhc-CChHHHHHhcC--------------------------------------------
Q 015537 261 TDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLM-------------------------------------------- 295 (405)
Q Consensus 261 ~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~-------------------------------------------- 295 (405)
.++..+|.|++....+..+.+-+. |++..|+..++
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 888889999887666655556554 55555544332
Q ss_pred ----------------------------------------------------------CCCcchHHHHHHHHhHhhcCCh
Q 015537 296 ----------------------------------------------------------HPSPSVLIPALRTVGNIVTGDD 317 (405)
Q Consensus 296 ----------------------------------------------------------~~~~~v~~~a~~~l~nl~~~~~ 317 (405)
+.++.+.+.+..+|.|++.+..
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 1112236778888999988764
Q ss_pred ----hhHHHH-HhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhccccc-chhhhH
Q 015537 318 ----MQTQCV-IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHF-FFGAII 391 (405)
Q Consensus 318 ----~~~~~~-~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~-~~~~~v 391 (405)
.....+ ....+++.|+.+|..+ ++.+.+.++-+|.|++.+-. .+.++..++++.|++.|...... ..+.++
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~r--nk~ligk~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDIR--NKELIGKYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCch--hhhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence 233334 5678999999999999 99999999999999987533 36677799999999999877651 123467
Q ss_pred HHHHHHHHhhhc
Q 015537 392 YKLAIWLCLVTC 403 (405)
Q Consensus 392 r~~A~~al~n~~ 403 (405)
-..++..|.|+.
T Consensus 629 v~~vc~tl~niv 640 (717)
T KOG1048|consen 629 VRAVCHTLNNIV 640 (717)
T ss_pred HHHHHHhHHHHH
Confidence 777777777764
No 23
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.62 E-value=7.3e-14 Score=139.77 Aligned_cols=323 Identities=17% Similarity=0.151 Sum_probs=238.9
Q ss_pred hcCHHHHHHhhcCC---ChHHHHHHHHHHHHhhccCCCCch--HHHHhcCcHH-------HHHHHhcCCC------CHHH
Q 015537 72 LENLPVMVAGVWSN---DSGVQYECTTQFRKLLSIERSPPI--EEVIRSGVVP-------RFVEFLLRED------YPQL 133 (405)
Q Consensus 72 ~~~l~~l~~~l~s~---~~~~~~~a~~~l~~l~s~~~~~~~--~~~~~~g~l~-------~Li~lL~~~~------~~~~ 133 (405)
.+.+|.+++.+... +.+.+..|-.+|.+++..+.+... +++--.-+++ ++..++.... ...-
T Consensus 234 SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H 313 (2195)
T KOG2122|consen 234 SGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEH 313 (2195)
T ss_pred ccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccch
Confidence 45689999999864 357888888999999765422221 1111111122 2223333321 1223
Q ss_pred HH-HHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC------------CCHHHHHHHHHHHHHhhCCChhhHHH-HHh
Q 015537 134 QF-EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS------------PSDDVREQAVWALGNIAGDSPRCRDL-VLS 199 (405)
Q Consensus 134 ~~-~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~------------~~~~i~~~a~~~L~nl~~~~~~~~~~-i~~ 199 (405)
+. .|+.+|..++++ .++|..+-+.|+++.+-.|+.- ....++..+..+|.||...+...+.. .-.
T Consensus 314 ~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~ 392 (2195)
T KOG2122|consen 314 QLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ 392 (2195)
T ss_pred hhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 44 677788888887 9999999999999999998752 23568999999999998666555443 446
Q ss_pred cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChh--hhhccHHHHHhh-hcCCChHHHHHHHHHHHHhccCChh
Q 015537 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD--QVSPALPALAHL-IHSNDDEVLTDACWALSYLSDGTND 276 (405)
Q Consensus 200 ~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~~l~~L~~l-l~~~d~~v~~~a~~~l~~l~~~~~~ 276 (405)
.|++..++..| .+...++....+..|.||+-.-...... ...|.+..|... ++......+..++.+|+||+.++.+
T Consensus 393 rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 393 RGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred hhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence 78899999999 6777789999999999998764222222 224555555543 5556677889999999999999888
Q ss_pred HHHHHHhc-CChHHHHHhcCCC----CcchHHHHHHHHhHhh---cCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHH
Q 015537 277 KIQAVIEA-GVFPRLAEFLMHP----SPSVLIPALRTVGNIV---TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA 348 (405)
Q Consensus 277 ~~~~~~~~-~~l~~L~~lL~~~----~~~v~~~a~~~l~nl~---~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a 348 (405)
+...++.- |.+..|+.+|... ...+...+-.+|-|+. +.++.+.+.+.++++|..|+..|.+. ...|...+
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNa 550 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNA 550 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecc
Confidence 77777765 9999999999765 3357777777777766 45667888889999999999999999 99999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537 349 CWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 349 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
|.+|+||.+.+++..+.|++.|.++.|-.++.+. +. .|-.-++-||.|+
T Consensus 551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hk----MIa~GSaaALrNL 599 (2195)
T KOG2122|consen 551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HK----MIAMGSAAALRNL 599 (2195)
T ss_pred hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hh----hhhhhHHHHHHHH
Confidence 9999999999999889999999999999999765 22 4555555666665
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.61 E-value=1.3e-14 Score=113.17 Aligned_cols=117 Identities=25% Similarity=0.356 Sum_probs=108.3
Q ss_pred HHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 015537 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (405)
Q Consensus 281 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 360 (405)
+++.|+++.++.+|.++++.++..++++|++++...+.....+++.|+++.+..++.++ ++.++..++|+|+|++.+.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56889999999999999999999999999999998888888899999999999999998 99999999999999999888
Q ss_pred HHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 361 EQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 361 ~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
.....+.+.|+++.|++++... +..+++.|+|+|+|+|
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~-----~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSS-----NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcC-----CHHHHHHHHHHHHHhh
Confidence 8788888999999999999766 2479999999999987
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.60 E-value=2.8e-14 Score=111.23 Aligned_cols=119 Identities=35% Similarity=0.611 Sum_probs=111.3
Q ss_pred HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 015537 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190 (405)
Q Consensus 111 ~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~ 190 (405)
.+++.|+++.|+++|.+++ +.++..++++|++++.++++....+++.|+++.++.+|.++++.++..++|+|+|++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4678899999999999988 899999999999999998999999999999999999999999999999999999999988
Q ss_pred hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 191 ~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
+..+..+...|+++.++.++ ...+..+++.++|+|.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 87888888899999999999 67789999999999999974
No 26
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=99.55 E-value=1.5e-15 Score=111.33 Aligned_cols=90 Identities=43% Similarity=0.632 Sum_probs=60.4
Q ss_pred CCCchHhhhhcCC-CCCchHHhhhhhHHHHHHHHHhhhHHHHhhhhccccCCCCCc-c-CCCCCc-hhhhhcCHHHHHHh
Q 015537 6 NSKADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA-N-DVNAPG-TAKKLENLPVMVAG 81 (405)
Q Consensus 6 ~~~~~~r~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~-~-~~~~~~-~~~~~~~l~~l~~~ 81 (405)
....+.|++.||+ ++|++|+|+||++..|+|||+||+|.|.|||++........+ . ...... .......+|.++..
T Consensus 3 ~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 82 (97)
T PF01749_consen 3 SKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAG 82 (97)
T ss_dssp ----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHH
T ss_pred ccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHh
Confidence 4577899999999 699999999999999999999999999999998654433211 1 111111 11122457899999
Q ss_pred hcCCChHHHHHHHH
Q 015537 82 VWSNDSGVQYECTT 95 (405)
Q Consensus 82 l~s~~~~~~~~a~~ 95 (405)
+.|+|+..|+.|+.
T Consensus 83 v~S~d~~~ql~Atq 96 (97)
T PF01749_consen 83 VNSDDPEVQLEATQ 96 (97)
T ss_dssp HTSSCHHHHHHHHH
T ss_pred cCCCCHHHHHHhhC
Confidence 99999999999975
No 27
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.51 E-value=6.2e-12 Score=112.25 Aligned_cols=309 Identities=12% Similarity=0.039 Sum_probs=231.5
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC------CHHHHHHHHHHHHHHhc
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNIAS 146 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~------~~~~~~~a~~~L~ni~~ 146 (405)
+.+..+.+...|+|.++..+..++|.+++..+ ++....+.+.|+-..+++.|+... +.+.-.-+...|.|..-
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 44677777778888999999999999998776 889999999999888888876421 24566667788999999
Q ss_pred CCchhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHH
Q 015537 147 GTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT 223 (405)
Q Consensus 147 ~~~~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~ 223 (405)
++.+.+..+++.|+++.|...+.- .+....+......+|+.+-- +...+...+......+++++....++.+...+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 989999999999999999988764 57777788887778776432 223344555666777888886667888888888
Q ss_pred HHHHHhhcCCCCCChhhhhccHHHHHhhhcC-CCh-------HHHHHHHHHHHHhccCChhHHHHHHhcC-ChHHHHHhc
Q 015537 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHS-NDD-------EVLTDACWALSYLSDGTNDKIQAVIEAG-VFPRLAEFL 294 (405)
Q Consensus 224 ~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~d~-------~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~L~~lL 294 (405)
..+...++++.-.....-.|.+..+..+++. .+. .....++....-+..+++.. +++...+ +++.+..++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM-QKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHh
Confidence 8999998886433333346777777777754 221 12233344444444455543 4565555 899999999
Q ss_pred CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC----chhHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 015537 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITAGNREQIQVIMHVH 370 (405)
Q Consensus 295 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 370 (405)
.+++......+..+|||++..++.. .++++.|++..|+.++.... +-.++..++.+|.|++---+. ...++..|
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n-ka~~~~aG 402 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN-KAHFAPAG 402 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc-hhhccccc
Confidence 9999999999999999999766654 45888899999999997521 567788899999999763333 46777899
Q ss_pred cHHHHHHHHhccccc
Q 015537 371 AFSIIVAFFFMFLHF 385 (405)
Q Consensus 371 ~i~~L~~lL~~~~~~ 385 (405)
+.+.+...++....+
T Consensus 403 vteaIL~~lk~~~pp 417 (604)
T KOG4500|consen 403 VTEAILLQLKLASPP 417 (604)
T ss_pred hHHHHHHHHHhcCCc
Confidence 999999888877655
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.51 E-value=1.6e-11 Score=127.11 Aligned_cols=259 Identities=18% Similarity=0.131 Sum_probs=170.5
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
.++.|++.|.++++.++..|+..|..+.. .+.++.|+..|++++ +.++..|+.+|..+....+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC----
Confidence 46889999999999999999999988732 235788888888777 8999999888888743211
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh------------hhHHHH----HhcCChHHHHHhhhCCCchh
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP------------RCRDLV----LSQGGLVPLLAQLNGQPKLS 217 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~------------~~~~~i----~~~~~i~~L~~~l~~~~~~~ 217 (405)
..+.|...|.++++.++..++.+|+.+....+ ..|... ...+..+.|+..+ .+++..
T Consensus 685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l-~D~~~~ 757 (897)
T PRK13800 685 ------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAA-TDENRE 757 (897)
T ss_pred ------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHh-cCCCHH
Confidence 12344555555555666656555554421110 001000 0111223444455 666667
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC
Q 015537 218 MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297 (405)
Q Consensus 218 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 297 (405)
++..++.+|..+....+ ..++.|..+++++|+.|+..++.+|+.+..... +.+.++..|.++
T Consensus 758 VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~----------~~~~l~~aL~d~ 819 (897)
T PRK13800 758 VRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGCPPD----------DVAAATAALRAS 819 (897)
T ss_pred HHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch----------hHHHHHHHhcCC
Confidence 77777777666654321 235667777777788888888888877743211 124567777888
Q ss_pred CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHH
Q 015537 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVA 377 (405)
Q Consensus 298 ~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 377 (405)
++.++..|+.+|+.+.. ...++.|..+|.++ ++.||+.|+++|+.+ .+++.. .+.|..
T Consensus 820 d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~-~~~VR~~A~~aL~~~-~~~~~a---------~~~L~~ 877 (897)
T PRK13800 820 AWQVRQGAARALAGAAA-----------DVAVPALVEALTDP-HLDVRKAAVLALTRW-PGDPAA---------RDALTT 877 (897)
T ss_pred ChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCC-CHHHHHHHHHHHhcc-CCCHHH---------HHHHHH
Confidence 88888888888887642 13458889999998 999999999999997 344443 445566
Q ss_pred HHhcccccchhhhHHHHHHHHHhh
Q 015537 378 FFFMFLHFFFGAIIYKLAIWLCLV 401 (405)
Q Consensus 378 lL~~~~~~~~~~~vr~~A~~al~n 401 (405)
.|+.. + +.||++|..||..
T Consensus 878 al~D~-d----~~Vr~~A~~aL~~ 896 (897)
T PRK13800 878 ALTDS-D----ADVRAYARRALAH 896 (897)
T ss_pred HHhCC-C----HHHHHHHHHHHhh
Confidence 67543 2 4799999999864
No 29
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.51 E-value=9.8e-13 Score=114.34 Aligned_cols=194 Identities=21% Similarity=0.235 Sum_probs=160.3
Q ss_pred HhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537 156 IDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (405)
Q Consensus 156 ~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 234 (405)
++.+-++.|+.+|+. .+|.+++.+..+++|.+..+ ..++.+.+.|+++.+.+++ .++++.++..+++++.|++...+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChh
Confidence 566778999999996 68999999999999987655 5889999999999999999 88999999999999999988753
Q ss_pred CCChhhhhccHHHHHhhhcC--CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537 235 QPPFDQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (405)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl 312 (405)
... .+...++.+.+.+.+ -|.+++..++.+|.+|+-.++. ..++ .+.++.++.+|.+++..++..++++|.|+
T Consensus 87 n~~--~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 NQE--QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hHH--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 322 334466666665443 3789999999999999855433 2233 34789999999999999999999999999
Q ss_pred hcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 313 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
+.. +..+..++..+++..++.+++.+.+..+-..+.+.+.||..
T Consensus 162 S~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 162 SEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred ccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 864 45566788889999999999988678889999999999964
No 30
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=3.8e-13 Score=125.64 Aligned_cols=315 Identities=18% Similarity=0.187 Sum_probs=200.9
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHH-HHh---cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE-VIR---SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~-~~~---~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~ 148 (405)
+.+|.|.++|.+++...+.-|..+|.++...+ ....+. +.+ .-.+|.|+++.++++ |.+|..|+.|+..+.-..
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecC
Confidence 45899999999999999999999999996432 111111 000 125899999999998 999999999998866543
Q ss_pred chhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh-cCChHHHHHhhhCCCchhHHHHHHHHHH
Q 015537 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (405)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~-~~~i~~L~~~l~~~~~~~~~~~a~~~l~ 227 (405)
+..-..-++ ..++.+..+-.+.+++|+.+.+.++..+..-.+. ..+-. .++++.++..- ++.|+.+.-.||..+.
T Consensus 206 ~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~phl~~IveyML~~t-qd~dE~VALEACEFwl 281 (885)
T KOG2023|consen 206 TQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRT-QDVDENVALEACEFWL 281 (885)
T ss_pred cHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHc-cCcchhHHHHHHHHHH
Confidence 322221122 4567778888889999999999999999865542 11111 23455666655 7788999999999999
Q ss_pred HhhcCC-C-CCChhhhhccHHHHHhhhcCCChH-H-HH------------------------------------------
Q 015537 228 NFCRGK-P-QPPFDQVSPALPALAHLIHSNDDE-V-LT------------------------------------------ 261 (405)
Q Consensus 228 ~l~~~~-~-~~~~~~~~~~l~~L~~ll~~~d~~-v-~~------------------------------------------ 261 (405)
.++..+ + ..-......++|.|+.-+..+|.+ + ..
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 999985 1 111233466777766533221110 0 00
Q ss_pred ----HHHHHHHHhccCChhHHHHHHhcCC----hHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHH
Q 015537 262 ----DACWALSYLSDGTNDKIQAVIEAGV----FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLL 333 (405)
Q Consensus 262 ----~a~~~l~~l~~~~~~~~~~~~~~~~----l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~ 333 (405)
..-|-|...+...-+...-+....+ +|.|-..|.+.++.+++.++.++|.|+.|.-...-.-+ ..++|.|+
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~ 440 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLL 440 (885)
T ss_pred cccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHH
Confidence 0012222222222222222333333 45555666788999999999999999987642211111 14789999
Q ss_pred HhhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537 334 NLLSGNYKKSIKKEACWTVSNITAG--NREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 334 ~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
.+|.+. .+-||.-+||+|+..+.. ..+ .+ .-..|.|-.+|...-+. ..+|++.||-|.+.|
T Consensus 441 ~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~----~~f~pvL~~ll~~llD~--NK~VQEAAcsAfAtl 503 (885)
T KOG2023|consen 441 SLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RD----EYFKPVLEGLLRRLLDS--NKKVQEAACSAFATL 503 (885)
T ss_pred HHhccC-ccceeeeeeeeHhhhhhhHhcCC-hH----hhhHHHHHHHHHHHhcc--cHHHHHHHHHHHHHH
Confidence 999999 999999999999999752 111 11 12233333333333222 247999999988765
No 31
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.1e-11 Score=123.26 Aligned_cols=319 Identities=17% Similarity=0.106 Sum_probs=224.0
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
+.++-+.+..+|+++..|..|+..|..+...-.+.....+ ..+.+.|.+.+.+++.+ ++..|+++++.++...+...
T Consensus 118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNK 194 (1075)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccch
Confidence 3477788888899999999999999888532211111111 12366677777777744 99999999999887654222
Q ss_pred HHHHhC-CChHHHHHhh----CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh-CCCchhHHHHHHHHH
Q 015537 153 KVVIDH-GAVPIFVKLL----YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTL 226 (405)
Q Consensus 153 ~~~~~~-g~i~~L~~lL----~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~-~~~~~~~~~~a~~~l 226 (405)
..+-.- ..+|.++..+ ..++.+....++.+|..++...+.+-...+.. ++...+.... +.-+..++..|+.+|
T Consensus 195 ~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~i 273 (1075)
T KOG2171|consen 195 SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEFL 273 (1075)
T ss_pred HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHHH
Confidence 222211 3456555555 45677778889999999997766543333221 4555555553 234889999999999
Q ss_pred HHhhcCCCCC---ChhhhhccHHHHHhhhcCC--C--------------hHHHHHHHHHHHHhccCCh-hHHHHHHhcCC
Q 015537 227 SNFCRGKPQP---PFDQVSPALPALAHLIHSN--D--------------DEVLTDACWALSYLSDGTN-DKIQAVIEAGV 286 (405)
Q Consensus 227 ~~l~~~~~~~---~~~~~~~~l~~L~~ll~~~--d--------------~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~ 286 (405)
..++++-|.. .......+++.+..++... | ...-..|..+|-.++.+=. +.+- .-+
T Consensus 274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~----p~~ 349 (1075)
T KOG2171|consen 274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL----PPL 349 (1075)
T ss_pred HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhheh----HHH
Confidence 9999874321 1123456777777766421 1 1123445566666654422 2211 123
Q ss_pred hHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 015537 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVI 366 (405)
Q Consensus 287 l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (405)
++.+-.+|.+.++.-|..++.+|+.++.|........++ .+++.++..|.++ +++||..||.+++.++..-...++.-
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 567777889999999999999999999999877766544 6899999999999 99999999999999998766668888
Q ss_pred HHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhccC
Q 015537 367 MHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCCE 405 (405)
Q Consensus 367 ~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~~ 405 (405)
...-++|.|+..+.+..+. .|+.+|+-|+-||-+|
T Consensus 428 ~~e~l~~aL~~~ld~~~~~----rV~ahAa~al~nf~E~ 462 (1075)
T KOG2171|consen 428 HHERLPPALIALLDSTQNV----RVQAHAAAALVNFSEE 462 (1075)
T ss_pred HHHhccHHHHHHhcccCch----HHHHHHHHHHHHHHHh
Confidence 8888999999999877555 7999999999998654
No 32
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=8.3e-11 Score=106.57 Aligned_cols=312 Identities=12% Similarity=0.106 Sum_probs=231.2
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
.+..+++.|..++.++.......|.++.-. .++...+.+.|++..|++++...+ ++++..++..+.|++.+ ...+.
T Consensus 305 iV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD-~glr~ 380 (791)
T KOG1222|consen 305 IVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFD-SGLRP 380 (791)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhcccc-ccccH
Confidence 467889999999988888888888888544 577788999999999999999998 99999999999999998 77888
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
.++..|.+|.+..+|.++.- ...|+..++.++.++. ++.++.....++.+++.+....+.++-......-.|||-+.
T Consensus 381 KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred HHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence 99999999999999997533 3457788889987776 77888888888888887766666666555555556676654
Q ss_pred CCCChhh-------------------------------------hhccHHHHHhhhcC-CChHHHHHHHHHHHHhccCCh
Q 015537 234 PQPPFDQ-------------------------------------VSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTN 275 (405)
Q Consensus 234 ~~~~~~~-------------------------------------~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~ 275 (405)
.+.+... .-..+.-|...++. ++......++.++++|.-.+-
T Consensus 458 RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl 537 (791)
T KOG1222|consen 458 RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL 537 (791)
T ss_pred ccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC
Confidence 2221110 00112222223333 346677888899999987777
Q ss_pred hHHHHHHhcCChHHHHHhcCCC--CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHHHH
Q 015537 276 DKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTV 352 (405)
Q Consensus 276 ~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L 352 (405)
+-.+.+.+..++|.+-..|..+ ..++....+-++|.++.. ......+..+|+++.++.+|+..+ +..+.-...+++
T Consensus 538 dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF 616 (791)
T KOG1222|consen 538 DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVF 616 (791)
T ss_pred CHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHH
Confidence 7777777779999999999653 446777778888888753 344555667799999999998763 667777888888
Q ss_pred HHHhcCCHHHHHHHH-HhCcHHHHHHHHhcccccchhhhHHHHHHHHH
Q 015537 353 SNITAGNREQIQVIM-HVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLC 399 (405)
Q Consensus 353 ~nl~~~~~~~~~~l~-~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al 399 (405)
..+..+ ....+.++ +...-..|++++.... . .||+-.-.+|
T Consensus 617 ~Q~l~H-e~tr~~miket~~~AylIDLMHDkN-~----eiRkVCDn~L 658 (791)
T KOG1222|consen 617 LQFLKH-ELTRRLMIKETALGAYLIDLMHDKN-A----EIRKVCDNAL 658 (791)
T ss_pred HHHHHH-HHHHHHHHhhccchHHHHHHHhccc-H----HHHHHHHHHH
Confidence 888776 45566666 5666678899886553 3 4887554443
No 33
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.45 E-value=4e-11 Score=110.99 Aligned_cols=280 Identities=15% Similarity=0.119 Sum_probs=205.4
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
....++..|+++|..++..|+..+..+++.. ..........-+++.+...|+++++...+.-|+.+|..+... ++.|.
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~ 179 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRF 179 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHH
Confidence 4577888888999999999999999998754 222111111123455666666554467888899999999988 88999
Q ss_pred HHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 154 VVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
.+.+.++++.|+.+|+. .+..++.+++.+++-++-+.+ ........+.++.+++++.....+.+.+.++.+|.|+..
T Consensus 180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 99999999999999986 256899999999999987665 445666788999999999888899999999999999998
Q ss_pred CCC----C--CChhhhhccHHHHHhhhcC---CChHHHHHHHHHHH-------Hhcc------------------C-Ch-
Q 015537 232 GKP----Q--PPFDQVSPALPALAHLIHS---NDDEVLTDACWALS-------YLSD------------------G-TN- 275 (405)
Q Consensus 232 ~~~----~--~~~~~~~~~l~~L~~ll~~---~d~~v~~~a~~~l~-------~l~~------------------~-~~- 275 (405)
... . ....++...++.++..|.. +|+++..+.-..-. .++. + ++
T Consensus 259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~ 338 (429)
T cd00256 259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK 338 (429)
T ss_pred cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence 541 1 1122233234444444433 46665554322211 1111 0 11
Q ss_pred ---hHHHHHHhc--CChHHHHHhc-CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHH
Q 015537 276 ---DKIQAVIEA--GVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEAC 349 (405)
Q Consensus 276 ---~~~~~~~~~--~~l~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~ 349 (405)
++...+-+. .++..|+.+| .+.++.+..-||.=||.++...+.....+-+.|+=..++.++.++ ++.||.+|.
T Consensus 339 FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL 417 (429)
T cd00256 339 FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEAL 417 (429)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHH
Confidence 233334333 4567889999 466788888999999999998888888788899999999999999 999999999
Q ss_pred HHHHHHhc
Q 015537 350 WTVSNITA 357 (405)
Q Consensus 350 ~~L~nl~~ 357 (405)
.++.-+..
T Consensus 418 ~avQklm~ 425 (429)
T cd00256 418 LAVQKLMV 425 (429)
T ss_pred HHHHHHHH
Confidence 99988754
No 34
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.45 E-value=8e-11 Score=109.01 Aligned_cols=318 Identities=10% Similarity=0.056 Sum_probs=224.4
Q ss_pred HHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhc-----CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015537 75 LPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRS-----GVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (405)
Q Consensus 75 l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-----g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~ 148 (405)
...+++.+.. ...++....+..+..++... ......+.+. .....++.+|..++ .-+...|+.+|+.+....
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhcC
Confidence 5677777765 55788888888889998753 3334455543 56788888998877 789999999999998754
Q ss_pred chhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC-chhHHHHHHHHH
Q 015537 149 SEHTKVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWTL 226 (405)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~-~~~~~~~a~~~l 226 (405)
+.........-.++.|...++++ +...+..++.+|..+....+ +|..+.+.+++++|+++|.... +.+++..++.++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 43222211112345566666653 57888899999999987766 8888888889999999996555 789999999999
Q ss_pred HHhhcCCCCCChhhhhccHHHHHhhhcCC-ChHHHHHHHHHHHHhccCC------hhHHHHHHhcCChHHHHHhcCC--C
Q 015537 227 SNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGT------NDKIQAVIEAGVFPRLAEFLMH--P 297 (405)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~l~~L~~lL~~--~ 297 (405)
+-|+...+........++++.++.+++.. ..++..-++.++.|+...+ ......+++.|+++.+-.+... .
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~ 291 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYD 291 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCC
Confidence 99998864333333368999999999765 5788888999999998743 2344567777776655444422 2
Q ss_pred CcchHHHHHHHHhHhh----------------------cCCh---------hhHHHHHhc--CchHHHHHhhcCCCchhH
Q 015537 298 SPSVLIPALRTVGNIV----------------------TGDD---------MQTQCVIEY--QALPCLLNLLSGNYKKSI 344 (405)
Q Consensus 298 ~~~v~~~a~~~l~nl~----------------------~~~~---------~~~~~~~~~--g~l~~L~~ll~~~~~~~v 344 (405)
|+++. ..+..|.... .-++ +....+-+. .++..|+++|..+.++.+
T Consensus 292 DedL~-edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 292 DEDLT-DDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred cHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence 33322 1222221111 0011 122223333 378899999965558888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537 345 KKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLV 401 (405)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n 401 (405)
..-||.=||.++...|.....+-+.|+=..++.++.+.+ ++||.+|..|+.-
T Consensus 371 laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d-----~~Vr~eAL~avQk 422 (429)
T cd00256 371 LAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHED-----PNVRYEALLAVQK 422 (429)
T ss_pred eehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCC-----HHHHHHHHHHHHH
Confidence 899999999999988887777778999999999998653 3699999998764
No 35
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.38 E-value=3.8e-10 Score=106.12 Aligned_cols=320 Identities=14% Similarity=0.080 Sum_probs=216.3
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCchhHHHH
Q 015537 77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVV 155 (405)
Q Consensus 77 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-~~~~~~~a~~~L~ni~~~~~~~~~~~ 155 (405)
.++.-+.+.+++....|..-..+++.+. +++...+++.|.++.++.++...+ .++.+.+.+-++...+.+.......+
T Consensus 13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence 3455556677888899999999998876 566668999999999999998654 35677677777777888888889999
Q ss_pred HhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHH---hcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 156 IDHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRDLVL---SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 156 ~~~g~i~~L~~lL~~~~-~~i~~~a~~~L~nl~~~~~~~~~~i~---~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
++.+.++.|+++|.+++ ..+++..+.++.++...++.. +... ...++..+..++ ..+...+.+.-+...+++|.
T Consensus 92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q-~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~ 169 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQ-DKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSS 169 (678)
T ss_pred HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccccc-ccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccc
Confidence 99999999999999988 889999999999998766422 2211 111233332222 21212222222222222222
Q ss_pred CCC------------------------------------------CCChhh-h------hccHH--HHHhhhcCCChHHH
Q 015537 232 GKP------------------------------------------QPPFDQ-V------SPALP--ALAHLIHSNDDEVL 260 (405)
Q Consensus 232 ~~~------------------------------------------~~~~~~-~------~~~l~--~L~~ll~~~d~~v~ 260 (405)
... ++.... . .++.+ .+..++++.+...+
T Consensus 170 ~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~ 249 (678)
T KOG1293|consen 170 TKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSER 249 (678)
T ss_pred cchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHH
Confidence 210 111111 1 11222 12223333443333
Q ss_pred HHHHHHHHHhccCCh-----------------hHHHH-------------------------------------------
Q 015537 261 TDACWALSYLSDGTN-----------------DKIQA------------------------------------------- 280 (405)
Q Consensus 261 ~~a~~~l~~l~~~~~-----------------~~~~~------------------------------------------- 280 (405)
..++.++.++...+. ...++
T Consensus 250 l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~ 329 (678)
T KOG1293|consen 250 LRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKT 329 (678)
T ss_pred HHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhh
Confidence 444444333322110 00000
Q ss_pred -------------------------------------------H------------------------------------
Q 015537 281 -------------------------------------------V------------------------------------ 281 (405)
Q Consensus 281 -------------------------------------------~------------------------------------ 281 (405)
+
T Consensus 330 ~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~ 409 (678)
T KOG1293|consen 330 TTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVS 409 (678)
T ss_pred HHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred ------HhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 015537 282 ------IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (405)
Q Consensus 282 ------~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl 355 (405)
-...+...|+++|..++..+...++.+|.|++..-......++..|+++.+..++.+. ++.+|..+.|+|.++
T Consensus 410 aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~-~~n~r~~~~~~Lr~l 488 (678)
T KOG1293|consen 410 ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP-DFNSRANSLWVLRHL 488 (678)
T ss_pred HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC-CchHHHHHHHHHHHH
Confidence 1123556788888888888999999999999987777788899999999999999999 999999999999999
Q ss_pred hcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 356 TAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 356 ~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
.-++.+..+......+...++..+-++.+ +.|++.+.-.+.|+-|
T Consensus 489 ~f~~de~~k~~~~~ki~a~~i~~l~nd~d----~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 489 MFNCDEEEKFQLLAKIPANLILDLINDPD----WAVQEQCFQLLRNLTC 533 (678)
T ss_pred HhcchHHHHHHHHHHhhHHHHHHHHhCCC----HHHHHHHHHHHHHhhc
Confidence 99888877777777777777777766644 4799999999999987
No 36
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=3.3e-11 Score=112.94 Aligned_cols=269 Identities=14% Similarity=0.148 Sum_probs=188.9
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC----CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 015537 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH----GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191 (405)
Q Consensus 116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~----g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~ 191 (405)
.++|.|+++|.+++ ...++-|..+|..|+.++++.-+.-+.. -.+|.++.+.+++++.++..|+.++..+....+
T Consensus 128 elLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence 36899999999988 6889999999999999876654432211 368999999999999999999999999876554
Q ss_pred hhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 015537 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (405)
Q Consensus 192 ~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (405)
..-..-++ .+++.+..+- ++.+++|++++|.++..|.+-.+......+.+++++++...++.|.+|..+||.....++
T Consensus 207 qal~~~iD-~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 207 QALYVHID-KFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HHHHHHHH-HHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 32111111 1344444444 888999999999999999998887777778899999999999999999999999999988
Q ss_pred cCChhHHHHHHhc---CChHHHHHhcCCCC--------------------------------------------------
Q 015537 272 DGTNDKIQAVIEA---GVFPRLAEFLMHPS-------------------------------------------------- 298 (405)
Q Consensus 272 ~~~~~~~~~~~~~---~~l~~L~~lL~~~~-------------------------------------------------- 298 (405)
+... . ..++.. .++|.|+.-+...+
T Consensus 285 eqpi-~-~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 285 EQPI-C-KEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred cCcC-c-HHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 7652 1 122221 44555544321100
Q ss_pred ------cchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--hC
Q 015537 299 ------PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH--VH 370 (405)
Q Consensus 299 ------~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~ 370 (405)
+.+|..+..+|.-++.-- .+.++. -++|.|...|.+. +..+|+.+..+||.|+.|.-+ .++. ..
T Consensus 363 dD~~~dWNLRkCSAAaLDVLanvf---~~elL~-~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~---g~~p~Lpe 434 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLANVF---GDELLP-ILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQ---GFVPHLPE 434 (885)
T ss_pred ccccccccHhhccHHHHHHHHHhh---HHHHHH-HHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhh---hcccchHH
Confidence 223433333333222100 111111 3466667777777 999999999999999876432 2222 25
Q ss_pred cHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537 371 AFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 371 ~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
++|.|+.+|.... +-||+-.||.|+.|
T Consensus 435 Lip~l~~~L~DKk-----plVRsITCWTLsRy 461 (885)
T KOG2023|consen 435 LIPFLLSLLDDKK-----PLVRSITCWTLSRY 461 (885)
T ss_pred HHHHHHHHhccCc-----cceeeeeeeeHhhh
Confidence 7899999997663 45999999999876
No 37
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.3e-11 Score=117.27 Aligned_cols=317 Identities=18% Similarity=0.191 Sum_probs=205.1
Q ss_pred HHHHHHhhcCCCh-HHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCCc-hh
Q 015537 75 LPVMVAGVWSNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIASGTS-EH 151 (405)
Q Consensus 75 l~~l~~~l~s~~~-~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~-~~~~~~~~~a~~~L~ni~~~~~-~~ 151 (405)
++.++.....+.+ .++..++.++..++..- .|..-.--...++-.+++-... ..+..+|..|+.+|.|-..... ..
T Consensus 131 i~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF 209 (859)
T KOG1241|consen 131 IVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANF 209 (859)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444444 47778888888885322 2221111123456666665543 3347899999999999654322 11
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
....-.+-+++..+..-++++.+++..|+.||..|..-.-.+-..-+....+..-+..+ ++++.++.-.+...++++|.
T Consensus 210 ~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEFWstice 288 (859)
T KOG1241|consen 210 NNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEFWSTICE 288 (859)
T ss_pred ccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHH
Confidence 11122223556677777889999999999999999754332322223333444455556 68899999999999999987
Q ss_pred CCCC-------------C--Ch----hhhhccHHHHHhhhcCC-------ChHHHHHHHHHHHHhccCChhHHHHHHhcC
Q 015537 232 GKPQ-------------P--PF----DQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (405)
Q Consensus 232 ~~~~-------------~--~~----~~~~~~l~~L~~ll~~~-------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 285 (405)
.... + .. .....++|.|+++|... |..+...|-.||.-++....+. ++. .
T Consensus 289 EEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~ 364 (859)
T KOG1241|consen 289 EEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-H 364 (859)
T ss_pred HHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-h
Confidence 5311 1 11 11246788888888542 2345555555565554332221 111 3
Q ss_pred ChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 015537 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQV 365 (405)
Q Consensus 286 ~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (405)
++|.+-.-++++++.-+..|+.++|.+..|.+.....-+-.+++|.++.++.++ .-.++..++|+|+.++.+.++.+.
T Consensus 365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~- 442 (859)
T KOG1241|consen 365 VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAII- 442 (859)
T ss_pred hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcc-
Confidence 456666677899999999999999999999887777677779999999999987 889999999999999987664332
Q ss_pred HHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 366 IMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 366 l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
..-..+.++..+..+-+. +|.+-.+++||+-++.
T Consensus 443 --n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 443 --NQELLQSKLSALLEGLND--EPRVASNVCWAFISLA 476 (859)
T ss_pred --cHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHH
Confidence 222223333333222222 4799999999998874
No 38
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.35 E-value=5.7e-11 Score=117.15 Aligned_cols=255 Identities=20% Similarity=0.199 Sum_probs=147.0
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
..++.+++.+.+.+...+.-+.-.+..+...+ +..-.+ +++.+.+=|.+++ +.++..|+++|++++. ++..
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~ 112 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED--PELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA 112 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS--HHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--hhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence 46778888888888877777777777665332 111111 3666767777777 7888888888888763 4433
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
. .+++.+..++.++++.||..|+.++..+...+|.. +... .++.+..++ .++++.+...|+.++..+ +.
T Consensus 113 ~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 113 E-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp H-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred h-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence 3 24677777888888888888888888887655532 2122 466777777 777788888888888887 22
Q ss_pred CCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (405)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl 312 (405)
.+..........++.|..++...++..+..++..+..++...+..... ..+++.+..++++.++.+...++.++..+
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 111111333455555555556667777777777777766554433311 12334444444444444444444444443
Q ss_pred hcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 313 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
....+ .-..+++.|..++.++ ++.+|-.++.+|..++.
T Consensus 259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~ 296 (526)
T PF01602_consen 259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQ 296 (526)
T ss_dssp SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCC
T ss_pred hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhc
Confidence 32111 1112344444444443 44444444444444443
No 39
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.33 E-value=2.7e-10 Score=118.02 Aligned_cols=230 Identities=18% Similarity=0.161 Sum_probs=147.7
Q ss_pred hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 015537 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193 (405)
Q Consensus 114 ~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~ 193 (405)
....++.|+..|.+++ +.+|..|+.+|+.+.. .++++.|...|.++++.++..|+.+|+.+....+.
T Consensus 619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~- 685 (897)
T PRK13800 619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP- 685 (897)
T ss_pred cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-
Confidence 4456889999999888 9999999999998753 25789999999999999999999999888532111
Q ss_pred HHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCC--------Ch----hhh-----hccHHHHHhhhcCCC
Q 015537 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP--------PF----DQV-----SPALPALAHLIHSND 256 (405)
Q Consensus 194 ~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~--------~~----~~~-----~~~l~~L~~ll~~~d 256 (405)
.+.+...| .++++.++..++.+|..+....+.. .. ..+ -+..+.|..++.+++
T Consensus 686 ---------~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~ 755 (897)
T PRK13800 686 ---------APALRDHL-GSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDEN 755 (897)
T ss_pred ---------hHHHHHHh-cCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCC
Confidence 12333444 3445555555555554432110000 00 000 000122334445555
Q ss_pred hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhh
Q 015537 257 DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL 336 (405)
Q Consensus 257 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll 336 (405)
+.|+..++.+|+.+..... ..++.|..++.++++.++..|+.+|+.+.... ...+.+...+
T Consensus 756 ~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL 816 (897)
T PRK13800 756 REVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAAL 816 (897)
T ss_pred HHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHh
Confidence 5555555555555432211 12567788888888888888888888874321 1224577888
Q ss_pred cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537 337 SGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 337 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
.++ ++.||..|+++|+.+.. + ..++.|+.+|.+. .+.||++|.++|+.+
T Consensus 817 ~d~-d~~VR~~Aa~aL~~l~~--~---------~a~~~L~~~L~D~-----~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 817 RAS-AWQVRQGAARALAGAAA--D---------VAVPALVEALTDP-----HLDVRKAAVLALTRW 865 (897)
T ss_pred cCC-ChHHHHHHHHHHHhccc--c---------chHHHHHHHhcCC-----CHHHHHHHHHHHhcc
Confidence 888 88999999999987731 2 2347888888654 247999999999864
No 40
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.32 E-value=9e-11 Score=115.77 Aligned_cols=288 Identities=15% Similarity=0.171 Sum_probs=207.2
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
.+..+.+.+.++++..+-.|++++.++.. + .+. ..+++.+.+++.+++ +.+|..|+.++..+...+++...
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~----~---~~~-~~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~ 150 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRT----P---EMA-EPLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE 150 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-S----H---HHH-HHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcc----c---chh-hHHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence 46677778888899999999999988852 1 222 225888999999988 99999999999999887665322
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
.. .++.+..+|.++++.++..|+.++..+ ...+.....+ -...+..|.+++ ...++-.+..++.++..++...
T Consensus 151 ---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~ 223 (526)
T PF01602_consen 151 ---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLL-SDPDPWLQIKILRLLRRYAPME 223 (526)
T ss_dssp ---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSS
T ss_pred ---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcc-cccchHHHHHHHHHHHhcccCC
Confidence 22 589999999999999999999999999 2222111111 111334444444 7789999999999999887664
Q ss_pred CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhh
Q 015537 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (405)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 313 (405)
+..... ..+++.+..++++.++.|...++.++..+..... .-..+++.+..+|.++++.++..++..|..++
T Consensus 224 ~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~ 295 (526)
T PF01602_consen 224 PEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLA 295 (526)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHC
T ss_pred hhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhh
Confidence 211111 4688888888888899999999999998876443 22345789999999999999999999999999
Q ss_pred cCChhhHHHHHhcCchHHHHHhhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHH
Q 015537 314 TGDDMQTQCVIEYQALPCLLNLLS-GNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIY 392 (405)
Q Consensus 314 ~~~~~~~~~~~~~g~l~~L~~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr 392 (405)
...+. .+. .....+..+. ++ +..+|..+.-+|.+++. +..+.. +++.|...+....+ ++++
T Consensus 296 ~~~~~----~v~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d----~~~~ 357 (526)
T PF01602_consen 296 QSNPP----AVF--NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSD----PDFR 357 (526)
T ss_dssp CHCHH----HHG--THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC------HHHH
T ss_pred cccch----hhh--hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccc----hhhh
Confidence 76621 222 2233344555 56 89999999999999973 454554 46677777733322 3689
Q ss_pred HHHHHHHhhhc
Q 015537 393 KLAIWLCLVTC 403 (405)
Q Consensus 393 ~~A~~al~n~~ 403 (405)
+++.-+|+.+|
T Consensus 358 ~~~i~~I~~la 368 (526)
T PF01602_consen 358 RELIKAIGDLA 368 (526)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 99999998765
No 41
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.31 E-value=3.2e-10 Score=101.46 Aligned_cols=280 Identities=14% Similarity=0.091 Sum_probs=204.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
-+.+++.+..+|......+.+.+.++.+.. +.........-....+...++++.+++-..-|++||.-+... ++.|..
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~ 193 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYA 193 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhhe
Confidence 467788888888888888889999887765 333221111112344555566644477888899999999998 899999
Q ss_pred HHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 155 VIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
++...++..++..+.+ .+-.++.+.+.|++-|.-.++. .+.+...+.++.|..++..+..+.|.+-++.++.|++..
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~-ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHA-AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999998843 4778999999999999876664 466677888999999998888999999999999999988
Q ss_pred CCCCC------hhhhhccHHHHHhhhc---CCChHHHHHHHHHHHHhcc---------------------CCh-------
Q 015537 233 KPQPP------FDQVSPALPALAHLIH---SNDDEVLTDACWALSYLSD---------------------GTN------- 275 (405)
Q Consensus 233 ~~~~~------~~~~~~~l~~L~~ll~---~~d~~v~~~a~~~l~~l~~---------------------~~~------- 275 (405)
.+... ..++..-++..++.|. -+|+++..+.-..-..|-. .++
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 64222 1222333333344443 2466665554333222211 011
Q ss_pred --hHHHHHHhc--CChHHHHHhcCCC-CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHH
Q 015537 276 --DKIQAVIEA--GVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACW 350 (405)
Q Consensus 276 --~~~~~~~~~--~~l~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~ 350 (405)
+++..+.+. .++..|+.+|... +|.+..-||.=||..+...++....+.+.|+=+.++++++++ ++.||.+|..
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALl 431 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALL 431 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHH
Confidence 223333333 5678899999654 588889999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHhcC
Q 015537 351 TVSNITAG 358 (405)
Q Consensus 351 ~L~nl~~~ 358 (405)
++-.+..+
T Consensus 432 avQ~lm~~ 439 (442)
T KOG2759|consen 432 AVQKLMVH 439 (442)
T ss_pred HHHHHHhh
Confidence 88777543
No 42
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=4.5e-09 Score=105.07 Aligned_cols=312 Identities=14% Similarity=0.163 Sum_probs=214.1
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhccCC--CCchHHHHhcCcHHHHHHHh----cCCCCHHHHHHHHHHHHHHhcCCch
Q 015537 77 VMVAGVWSNDSGVQYECTTQFRKLLSIER--SPPIEEVIRSGVVPRFVEFL----LREDYPQLQFEAAWALTNIASGTSE 150 (405)
Q Consensus 77 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~--~~~~~~~~~~g~l~~Li~lL----~~~~~~~~~~~a~~~L~ni~~~~~~ 150 (405)
.+.+.+...+..++..|++++..++...+ ....+.+. ..+|.++..+ ..++ .+.-..++.+|..++...+.
T Consensus 163 lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d-~~~a~~~l~~l~El~e~~pk 239 (1075)
T KOG2171|consen 163 LFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGD-DDAAKSALEALIELLESEPK 239 (1075)
T ss_pred HHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccc-hHHHHHHHHHHHHHHhhchH
Confidence 34445555555599999999887765432 11122232 3356555544 4555 66778899999999988777
Q ss_pred hHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhhHHHHHhc--CChHHHHHhhhC---C----------
Q 015537 151 HTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRDLVLSQ--GGLVPLLAQLNG---Q---------- 213 (405)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~~~~~~~i~~~--~~i~~L~~~l~~---~---------- 213 (405)
.....+. .+|+.-+.+..+. ++.+|..|+.+|..++..-|......... ..++.++.++.. +
T Consensus 240 ~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~d 318 (1075)
T KOG2171|consen 240 LLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLD 318 (1075)
T ss_pred HHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccc
Confidence 6665554 4677777777763 78899999999999987744332222221 124444444411 0
Q ss_pred -C-chhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHH
Q 015537 214 -P-KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA 291 (405)
Q Consensus 214 -~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~ 291 (405)
. ...-...+..++-.++.+-+.. .....+++.+-.++.+.+..-+..++.+|+-++.++.+.....+ ..+++.++
T Consensus 319 ed~~~~~~~~A~~~lDrlA~~L~g~--~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl 395 (1075)
T KOG2171|consen 319 EDDEETPYRAAEQALDRLALHLGGK--QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVL 395 (1075)
T ss_pred cccccCcHHHHHHHHHHHHhcCChh--hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHH
Confidence 0 1234667777777777764322 22346778888899999999999999999999999987655433 36788899
Q ss_pred HhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 015537 292 EFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR-EQIQVIMHVH 370 (405)
Q Consensus 292 ~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~ 370 (405)
..|.++++.||..||.++|-+++.-....+.-....+++.|+..+.+..+++++..|+-++-|+....+ +.+..-+ .+
T Consensus 396 ~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~ 474 (1075)
T KOG2171|consen 396 NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DG 474 (1075)
T ss_pred hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HH
Confidence 999999999999999999999976555555555667888999999998788999999999999987533 3333222 24
Q ss_pred cHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537 371 AFSIIVAFFFMFLHFFFGAIIYKLAIWLCL 400 (405)
Q Consensus 371 ~i~~L~~lL~~~~~~~~~~~vr~~A~~al~ 400 (405)
++..++..|..... +.||..|.-+|+
T Consensus 475 lm~~~l~~L~~~~~----~~v~e~vvtaIa 500 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSK----PYVQEQAVTAIA 500 (1075)
T ss_pred HHHHHHHHHhcCCc----hhHHHHHHHHHH
Confidence 44434444444333 479998888876
No 43
>PTZ00429 beta-adaptin; Provisional
Probab=99.28 E-value=1.4e-08 Score=101.29 Aligned_cols=257 Identities=14% Similarity=0.107 Sum_probs=180.8
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
.++.+++.+.++|...+.-+...+.+++..+ +..-.+ +++.|.+=+.+++ |.+|..|++++++|-. ++...
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~--pelalL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e 139 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQ--PEKALL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE 139 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--hHHHHH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH
Confidence 5789999999999999988888888885432 221111 3778888888888 9999999999999855 33222
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
-+++.+.+.+.+.++.|+..|+.++.++...++ +.+.+.|.++.|..++ .+.++.+..+|+.+|..++...
T Consensus 140 -----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 140 -----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhC
Confidence 245677888899999999999999999987666 3444567788888887 8999999999999999998765
Q ss_pred CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhh
Q 015537 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (405)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 313 (405)
+. ......+.+..++..+..-++..+...+.+|....-.+.... ..++..+...|++.++.|...|++++-++.
T Consensus 211 ~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 211 SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 43 244445666677777777778888888888876543322222 245788889999999999999999998887
Q ss_pred cCC-hhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 314 TGD-DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 314 ~~~-~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
... +.....+. ..+-..++.++ ++ ++.++-.+...|.-+..
T Consensus 285 ~~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 285 SRCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLV 326 (746)
T ss_pred CcCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHH
Confidence 542 22222111 11224445543 33 45555555544444433
No 44
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=7.9e-10 Score=108.61 Aligned_cols=278 Identities=18% Similarity=0.217 Sum_probs=217.4
Q ss_pred hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHH
Q 015537 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (405)
Q Consensus 87 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~ 166 (405)
-..|+.|..+.-...+.++.|+-+ +|.+++.|-+. --+..|+..|+....-.+-....-+.-|+.|++++
T Consensus 450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK 519 (1387)
T KOG1517|consen 450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK 519 (1387)
T ss_pred HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 467888888888887777777766 77777777653 34788899999988876887888888899999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC--chhHHHHHHHHHHHhhcCCCCCChhhh-hc
Q 015537 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCRGKPQPPFDQV-SP 243 (405)
Q Consensus 167 lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~ 243 (405)
+|+++-.+++...+.+...|..-++.|+-.+++.++-...+..|..++ +++-+..+++.|+.++++.+..+.... .+
T Consensus 520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~ 599 (1387)
T KOG1517|consen 520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN 599 (1387)
T ss_pred HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence 999999999999999999987766878888888888888888884423 568889999999999999755444443 67
Q ss_pred cHHHHHhhhcCC-ChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcC----Chh
Q 015537 244 ALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDM 318 (405)
Q Consensus 244 ~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~----~~~ 318 (405)
++...+..+.++ .+-.+..+|-+|+.|-.+.++..=.=...++.+.|+.+|+++-++||.+|+.+||.+..+ .++
T Consensus 600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde 679 (1387)
T KOG1517|consen 600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE 679 (1387)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence 778888888875 688899999999999876655433345568889999999999999999999999999975 344
Q ss_pred hHHHH------------HhcCch---HHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHH
Q 015537 319 QTQCV------------IEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSII 375 (405)
Q Consensus 319 ~~~~~------------~~~g~l---~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L 375 (405)
++..+ ++..+. -.++.+++.+ .+-++.+.+-+|+.+..+...+...+.-....|..
T Consensus 680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n~~~~~~ 750 (1387)
T KOG1517|consen 680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLPES 750 (1387)
T ss_pred hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhhhcccch
Confidence 43333 222222 3677788888 99999999999999998888777666554444443
No 45
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=9.5e-10 Score=105.97 Aligned_cols=263 Identities=16% Similarity=0.156 Sum_probs=209.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH-HhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHH
Q 015537 118 VPRFVEFLLREDYPQLQFEAAWALTN-IASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRD 195 (405)
Q Consensus 118 l~~Li~lL~~~~~~~~~~~a~~~L~n-i~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (405)
+..|++-|....++..|.+|+.-|+. +..++.+....+--.-.+|.|+.+|++ .+.+|.-+|+.+|.+++.-.|..-.
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 55566666655347888888877776 444655555545445679999999998 5889999999999999988887778
Q ss_pred HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC-C
Q 015537 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-T 274 (405)
Q Consensus 196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~ 274 (405)
.+++.++|+.|+..|..-...++.+.++.+|-.+++.+|. ...-.|.+...+.+|.=-...++..|+.+.+|+|.. .
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~--AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK--AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH--HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8899999999999997888999999999999999998643 233357777777766544567889999999999865 3
Q ss_pred hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcC---ChhhHHHHHhcCchHHHHHhhcCCC---chhHHHHH
Q 015537 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG---DDMQTQCVIEYQALPCLLNLLSGNY---KKSIKKEA 348 (405)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~---~~~~~~~~~~~g~l~~L~~ll~~~~---~~~v~~~a 348 (405)
++....+++ .+|.|..+|++.+....+.++.++..++.+ .+...+.+...|++.-...++.-.+ +..+.-..
T Consensus 327 sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 327 SDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred CccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence 343444553 589999999999999999999999999854 4566777889999999999998662 33556667
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccc
Q 015537 349 CWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLH 384 (405)
Q Consensus 349 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~ 384 (405)
...|+-++.+++.....+...++...|.++|..+..
T Consensus 405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~ 440 (1051)
T KOG0168|consen 405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSK 440 (1051)
T ss_pred HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCc
Confidence 788999999999999999999999999999987643
No 46
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.8e-09 Score=95.52 Aligned_cols=183 Identities=16% Similarity=0.210 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh
Q 015537 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL 210 (405)
Q Consensus 131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l 210 (405)
.+-+..|+.-|..++.. -++...++..|+...++.++++++..+++.|+|+|+..+..+|.++..+++.|++..|+..+
T Consensus 97 le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 67788888888888887 77788899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCchhHHHHHHHHHHHhhcCCCCCChh-hhhccHHHHHhhhcC--CChHHHHHHHHHHHHhccCChhHHHHHHhcCCh
Q 015537 211 NGQPKLSMLRNATWTLSNFCRGKPQPPFD-QVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVF 287 (405)
Q Consensus 211 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~l~~L~~ll~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l 287 (405)
..+.+..++..++.+++.+.++.+..... ...++...|...+++ .+...+..++..++++..........+...+..
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 87788899999999999999998444333 335668899999988 568888999999999987766655555555777
Q ss_pred HHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537 288 PRLAEFLMHPSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 288 ~~L~~lL~~~~~~v~~~a~~~l~nl~~ 314 (405)
..+..+....+.++...++.++-....
T Consensus 256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 256 RVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 777777788888889888888776664
No 47
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=7.8e-10 Score=97.77 Aligned_cols=186 Identities=22% Similarity=0.220 Sum_probs=155.0
Q ss_pred cCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChH
Q 015537 83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162 (405)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~ 162 (405)
.+.+.+.+..|+..|..++- +-.+...++..|++..++.++++++ +.+|..|+|+|+.++.++|..+..+++.|+++
T Consensus 93 ~s~~le~ke~ald~Le~lve--~iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVE--DIDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHH--hhhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 35678889999999988863 2566778899999999999999998 99999999999999999999999999999999
Q ss_pred HHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCC-CchhHHHHHHHHHHHhhcCCCCCChhh
Q 015537 163 IFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (405)
Q Consensus 163 ~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~ 240 (405)
.|+..|.++ +..++..|+.+++.+..+.++..+.+...++...|.+.+... .+..+++.++..+..|...........
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999875 556789999999999999999999999999999999999543 689999999999999998874333333
Q ss_pred h-hccHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 015537 241 V-SPALPALAHLIHSNDDEVLTDACWALSYLS 271 (405)
Q Consensus 241 ~-~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (405)
. .+....+..+..+.+.++...++.++..+.
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 3 344445666666677888888877776654
No 48
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=7.8e-10 Score=105.50 Aligned_cols=321 Identities=17% Similarity=0.147 Sum_probs=218.3
Q ss_pred HHHHHHhhcC--CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 75 LPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 75 l~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
+..++...+. ++..+++.|+.+|.+-+-..+...-.+.-..-++...++.-++++ .+++..|..||..|..-..+..
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m 252 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFM 252 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554 456889999999988775542122222223334566667767777 8999999999999999877888
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH----HH-----------H---HhcCChHHHHHhhhC-C
Q 015537 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR----DL-----------V---LSQGGLVPLLAQLNG-Q 213 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~----~~-----------i---~~~~~i~~L~~~l~~-~ 213 (405)
...+....++.-+.-+++++++|.-+++...+++|.+.-... +. + .-.+.+|.|+++|.+ +
T Consensus 253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 888877788888888899999999999999999984321100 00 0 012456778888753 1
Q ss_pred -----CchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChH
Q 015537 214 -----PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288 (405)
Q Consensus 214 -----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 288 (405)
.+-.....+..||.-+++...+ ..+..++|.+-.-++++|..-+..+.-+++.+..+.+...-.-+-.+++|
T Consensus 333 e~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp 409 (859)
T KOG1241|consen 333 EDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP 409 (859)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHhcc---cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence 1234556666666666554321 23347888888888999999999999999999988776555556668899
Q ss_pred HHHHhcCCCCcchHHHHHHHHhHhhcCChhhHH-HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH--
Q 015537 289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ-CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQV-- 365 (405)
Q Consensus 289 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~-~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~-- 365 (405)
.++.++.++...++..+.|++|.++.+.++... ...-.+.++.++.-|.+. |++...+||++.+++.+-++....
T Consensus 410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De--Prva~N~CWAf~~Laea~~eA~~s~~ 487 (859)
T KOG1241|consen 410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE--PRVASNVCWAFISLAEAAYEAAVSNG 487 (859)
T ss_pred HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC--chHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999988888999999999999987664332 233446778888888764 799999999999998422211100
Q ss_pred ---HHHhCcHHHHHHHHhccccc--chhhhHHHHHHHHHhhh
Q 015537 366 ---IMHVHAFSIIVAFFFMFLHF--FFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 366 ---l~~~~~i~~L~~lL~~~~~~--~~~~~vr~~A~~al~n~ 402 (405)
... ..++.++.-|-...+. ..+...|-.|.-||+-.
T Consensus 488 qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmEl 528 (859)
T KOG1241|consen 488 QTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMEL 528 (859)
T ss_pred CCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence 001 2333333333222222 13457899888888743
No 49
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=2.3e-09 Score=97.45 Aligned_cols=300 Identities=16% Similarity=0.077 Sum_probs=218.4
Q ss_pred hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHH
Q 015537 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (405)
Q Consensus 87 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~ 166 (405)
..+..-|+..|.+++.. ...-..+...+++..|++.|+.++ .++.......|..++-. .+++..+.+.|++..|++
T Consensus 277 eqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~k 352 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLK 352 (791)
T ss_pred HHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHH
Confidence 44555567777787632 233345888999999999999988 78888888888888776 678888999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHH
Q 015537 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALP 246 (405)
Q Consensus 167 lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~ 246 (405)
++...+++++...+..+.|++-++. .|...+..|.+|.+..++.++... ..|+..++.++-.+..........+++
T Consensus 353 lfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdci~ 428 (791)
T KOG1222|consen 353 LFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDCIK 428 (791)
T ss_pred hcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHHHH
Confidence 9999999999999999999998876 667777889999999999544433 345556667766644333444478888
Q ss_pred HHHhhh-cCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-CCCCcchHHHHHHHHhHhhcCChhhHHHHH
Q 015537 247 ALAHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVI 324 (405)
Q Consensus 247 ~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~ 324 (405)
.+.+.+ ...+.+|-.+.+....+++... .+.+.+++-.++..|+..- .+.++ + -...+.||+++.......++
T Consensus 429 ~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~-l---LmK~vRniSqHeg~tqn~Fi 503 (791)
T KOG1222|consen 429 LLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDL-L---LMKVVRNISQHEGATQNMFI 503 (791)
T ss_pred HHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccch-H---HHHHHHHhhhccchHHHHHH
Confidence 877654 4456666666666556776433 3456677766677776654 44443 2 34566778877664444455
Q ss_pred hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 325 EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 325 ~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
+ .+.-|..++....+...--++..+++|++..+-+-.+.+-+.+++|-+-..|..+-.+ .++.-+...++|.+.|
T Consensus 504 d--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~e---ddLvL~~vi~~GT~a~ 578 (791)
T KOG1222|consen 504 D--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADE---DDLVLQIVIACGTMAR 578 (791)
T ss_pred H--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccc---hhhhhHHHHHhhhhhh
Confidence 4 3556667776665677888999999999875555445566899999999999877655 3688888888887765
No 50
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.20 E-value=2.1e-08 Score=94.70 Aligned_cols=296 Identities=15% Similarity=0.193 Sum_probs=206.2
Q ss_pred hhcCHHHHHHhhcCCC--hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015537 71 KLENLPVMVAGVWSND--SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (405)
Q Consensus 71 ~~~~l~~l~~~l~s~~--~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~ 148 (405)
+.+.++.++..+..++ .+.+...+..+..+..++ ......+.+.+.++.+.++|+.++...++...+.++.++.+.+
T Consensus 49 k~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~ 127 (678)
T KOG1293|consen 49 KLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETS 127 (678)
T ss_pred hhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcc
Confidence 4577899999888765 455555666677777776 7778899999999999999998875577888888888887765
Q ss_pred chhH-------------------------------------------HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-
Q 015537 149 SEHT-------------------------------------------KVVIDHGAVPIFVKLLYSPSDDVREQAVWALG- 184 (405)
Q Consensus 149 ~~~~-------------------------------------------~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~- 184 (405)
+.+- ....+.|+.+.+.-++...+...+.+|+.+++
T Consensus 128 ~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr 207 (678)
T KOG1293|consen 128 KYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSR 207 (678)
T ss_pred cccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 3211 11222333344433444445677888888888
Q ss_pred --HhhCCChhhHHH----HHhcCChHH-HHHhhhCCCchhHHHHHHHHHHHhhcCC-CCCC-------hh----------
Q 015537 185 --NIAGDSPRCRDL----VLSQGGLVP-LLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP-------FD---------- 239 (405)
Q Consensus 185 --nl~~~~~~~~~~----i~~~~~i~~-L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~-------~~---------- 239 (405)
++...++..... ....|+.+. .+..+.++++...+..++.++.++++.. .... ..
T Consensus 208 ~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~ 287 (678)
T KOG1293|consen 208 GDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYN 287 (678)
T ss_pred cceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHh
Confidence 776666544322 223333332 3333335555555555555555554433 0000 00
Q ss_pred --------------------------------------------------------------------------------
Q 015537 240 -------------------------------------------------------------------------------- 239 (405)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (405)
T Consensus 288 ~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i 367 (678)
T KOG1293|consen 288 CIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEI 367 (678)
T ss_pred hheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcch
Confidence
Q ss_pred ------------------------------------------------hhhccHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 015537 240 ------------------------------------------------QVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (405)
Q Consensus 240 ------------------------------------------------~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (405)
....+...+++++..++..|...++.+|.|+.
T Consensus 368 ~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlV 447 (678)
T KOG1293|consen 368 SLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLV 447 (678)
T ss_pred hHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHH
Confidence 01344555677777777888888999999998
Q ss_pred cCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcC-chHHHHHhhcCCCchhHHHHHHH
Q 015537 272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ-ALPCLLNLLSGNYKKSIKKEACW 350 (405)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g-~l~~L~~ll~~~~~~~v~~~a~~ 350 (405)
-........++..|+++.+..++.+.++.++..++|+|.+++.+.++..+...... ....+..+.+++ ++.|++.+.-
T Consensus 448 mefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~-d~~Vqeq~fq 526 (678)
T KOG1293|consen 448 MEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP-DWAVQEQCFQ 526 (678)
T ss_pred hhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC-CHHHHHHHHH
Confidence 76666677899999999999999999999999999999999998886555444333 455666777777 9999999999
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 015537 351 TVSNITAGNREQIQVIMH 368 (405)
Q Consensus 351 ~L~nl~~~~~~~~~~l~~ 368 (405)
.+.|++.++.+.++.+++
T Consensus 527 llRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 527 LLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHHHhhcCcHHHHHHHHH
Confidence 999999998888888875
No 51
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.17 E-value=1.5e-08 Score=90.94 Aligned_cols=319 Identities=11% Similarity=0.038 Sum_probs=223.9
Q ss_pred CHHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHH-------hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015537 74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVI-------RSGVVPRFVEFLLREDYPQLQFEAAWALTNIA 145 (405)
Q Consensus 74 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~-------~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~ 145 (405)
.+..++..+... .++....++..+..+++.+ +....++ ..-.-+.++.+|..++ .-+...+.|+++.++
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHHH
Confidence 457777777753 4677778888888998764 3332222 2234678899999888 788888999999987
Q ss_pred cCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh-hCCCchhHHHHHH
Q 015537 146 SGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL-NGQPKLSMLRNAT 223 (405)
Q Consensus 146 ~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l-~~~~~~~~~~~a~ 223 (405)
.............-....|-..+++ .+++-...++.||..+...++ +|..+....++..++..+ ++..+..++...+
T Consensus 143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi 221 (442)
T KOG2759|consen 143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQYQSI 221 (442)
T ss_pred HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence 7533322110000112344445555 677888889999999997766 788888888888898888 5556899999999
Q ss_pred HHHHHhhcCCCCCChhhhhccHHHHHhhhcCC-ChHHHHHHHHHHHHhccCCh------hHHHHHHhcCChHHHHHhcC-
Q 015537 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTN------DKIQAVIEAGVFPRLAEFLM- 295 (405)
Q Consensus 224 ~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~------~~~~~~~~~~~l~~L~~lL~- 295 (405)
.|++.|+.+++........+.++.|..++++. .+.|..-++.++.|+++..+ +.+..++..++.+.+-.+..
T Consensus 222 fciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~r 301 (442)
T KOG2759|consen 222 FCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEER 301 (442)
T ss_pred HHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhc
Confidence 99999998864443344468899999999765 57888889999999998774 44566777777666555543
Q ss_pred -CCCcchHHHHHHHH-------hHhhcC--------------Ch---------hhHHHHHhc--CchHHHHHhhcCCCch
Q 015537 296 -HPSPSVLIPALRTV-------GNIVTG--------------DD---------MQTQCVIEY--QALPCLLNLLSGNYKK 342 (405)
Q Consensus 296 -~~~~~v~~~a~~~l-------~nl~~~--------------~~---------~~~~~~~~~--g~l~~L~~ll~~~~~~ 342 (405)
..|+++....-..- -.+++. ++ +....+.+. .++..|+++|.++.+|
T Consensus 302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp 381 (442)
T KOG2759|consen 302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDP 381 (442)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCC
Confidence 23433322111111 111111 11 122233332 4889999999998679
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537 343 SIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLV 401 (405)
Q Consensus 343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n 401 (405)
.+-.-||.-|+....+.|+....+.+.|+=..++++|++.+ |+||-+|.-|+-.
T Consensus 382 ~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d-----~~Vry~ALlavQ~ 435 (442)
T KOG2759|consen 382 IILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHED-----PEVRYHALLAVQK 435 (442)
T ss_pred ceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCC-----chHHHHHHHHHHH
Confidence 99999999999999999998888889999999999998763 4699999988654
No 52
>PTZ00429 beta-adaptin; Provisional
Probab=99.17 E-value=5.1e-08 Score=97.38 Aligned_cols=274 Identities=17% Similarity=0.104 Sum_probs=193.9
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
.+.++-+.|++.+...+..|++.+..+.... .+. +.+.+..++++.+.+ ..++.-+-..+.+.+...++..
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela- 103 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDV------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA- 103 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH-
Confidence 3567788888888888888887554444332 111 224677788888887 8999999999999988666543
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
+ -++..|.+=+.++++.++-.|+.++++|-. +.. ++ -.+.++.+.+ .+.++-|++.|+.++..+....
T Consensus 104 -l---LaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i----~e-~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 104 -L---LAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSV----LE-YTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred -H---HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHH----HH-HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhC
Confidence 2 246788888889999999999999999853 211 12 1456677777 8899999999999999998875
Q ss_pred CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhh
Q 015537 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (405)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 313 (405)
|.. ....+.++.|..++.+.|+.|..+|+.+|..+...++.... ...+.+..++..|..-++-.+...+.+|....
T Consensus 172 pel--v~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~ 247 (746)
T PTZ00429 172 MQL--FYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQR 247 (746)
T ss_pred ccc--ccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Confidence 532 22356788899999999999999999999999866554332 23455677777776666777777777775543
Q ss_pred cCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHH
Q 015537 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIVAFF 379 (405)
Q Consensus 314 ~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~lL 379 (405)
..++... ..++..+...|++. ++.|.-+|+.++.++... +++.+..+. ..+-++|+.++
T Consensus 248 P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L~ 307 (746)
T PTZ00429 248 PSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTLS 307 (746)
T ss_pred CCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHhh
Confidence 2222222 24677788889898 899999999999998753 233333322 22334555554
No 53
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.09 E-value=3.6e-09 Score=96.52 Aligned_cols=232 Identities=17% Similarity=0.196 Sum_probs=161.5
Q ss_pred hHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHh------cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 161 VPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLS------QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 161 i~~L~~lL~--~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~------~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
...++.+|+ ++++++....+..+..+..+++...+.+.. .....++++++ ..+|..+...++..+..+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence 444455554 368899999999999999888877666654 23578889877 777999999999999999988
Q ss_pred CCCCChhhhhccHHHHHhhhc----CCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-----CC--CCcch
Q 015537 233 KPQPPFDQVSPALPALAHLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-----MH--PSPSV 301 (405)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~----~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-----~~--~~~~v 301 (405)
.+........+.++.++..+. +++.+++.-++.++..+.. .+.....+.+.|+++.+..+| .+ ....+
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 755555433455566555554 4556778889999999984 555566788899999999999 22 24477
Q ss_pred HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHhCcHHHHHHHHh
Q 015537 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQVIMHVHAFSIIVAFFF 380 (405)
Q Consensus 302 ~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~lL~ 380 (405)
+..++.++.-++. ++.....+.+.++++.|..++......+|-+-+..++.|+....++ .+..++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 8889999988875 5556667888889999999999887899999999999999975443 6788888888888777665
Q ss_pred cccccchhhhHHHHHHHH
Q 015537 381 MFLHFFFGAIIYKLAIWL 398 (405)
Q Consensus 381 ~~~~~~~~~~vr~~A~~a 398 (405)
..-. ++++.....+.
T Consensus 294 rk~~---Dedl~edl~~L 308 (312)
T PF03224_consen 294 RKWS---DEDLTEDLEFL 308 (312)
T ss_dssp S--S---SHHHHHHHHHH
T ss_pred CCCC---CHHHHHHHHHH
Confidence 4322 34777665554
No 54
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.8e-07 Score=90.11 Aligned_cols=322 Identities=18% Similarity=0.186 Sum_probs=237.2
Q ss_pred cCHHHHHHhhcCCC-hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCCc-
Q 015537 73 ENLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTS- 149 (405)
Q Consensus 73 ~~l~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~-~~~~~~~~a~~~L~ni~~~~~- 149 (405)
+.|+.|+.-+.+.. .+.+..|+..|..+.. .....+ -..+++.|++.|..+ .++++...++..+.++....+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr----kYR~~V-ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR----KYREEV-GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH----HHHHHH-HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 57899999888754 7889999999988742 233334 444599999999764 348999999999999888652
Q ss_pred -----hhH----------HHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHh-cCChHHHHHhhh
Q 015537 150 -----EHT----------KVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLS-QGGLVPLLAQLN 211 (405)
Q Consensus 150 -----~~~----------~~~~-~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~-~~~i~~L~~~l~ 211 (405)
+.+ +.++ ..+.|..|+..+...|-.||..++..|.++... +++.++.++. .-++..++.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL- 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL- 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence 111 2233 457899999999999999999999999998754 4567776654 45789999999
Q ss_pred CCCchhHHHHHHHHHHHhhcCCCCCC-hhhhhccHHHHHhhhcCC---C-hHHHHHHHHHHHHhccCChhHHHHHHhcCC
Q 015537 212 GQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN---D-DEVLTDACWALSYLSDGTNDKIQAVIEAGV 286 (405)
Q Consensus 212 ~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~---d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 286 (405)
.+..+.++..++..|..|.++.+... ......++..|..++... | .-|..+++..+.+|...+..+.+.+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 88888899999999999999985544 344588999999998653 3 358889999999999998888899999999
Q ss_pred hHHHHHhcCC---CCcc----------hHHHHHHHHhHhhcCC-h-----hhHHHHHhcCchHHHHHhhcCC-CchhHHH
Q 015537 287 FPRLAEFLMH---PSPS----------VLIPALRTVGNIVTGD-D-----MQTQCVIEYQALPCLLNLLSGN-YKKSIKK 346 (405)
Q Consensus 287 l~~L~~lL~~---~~~~----------v~~~a~~~l~nl~~~~-~-----~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~ 346 (405)
+|+|..+|.- .+.+ -...++.++..++.-. . .....+..++++..|..++-++ -..+|+.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988842 2211 1234666666666422 1 2224567789999999999887 3678999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC------cHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537 347 EACWTVSNITAGNREQIQVIMHVH------AFSIIVAFFFMFLHFFFGAIIYKLAIWLCL 400 (405)
Q Consensus 347 ~a~~~L~nl~~~~~~~~~~l~~~~------~i~~L~~lL~~~~~~~~~~~vr~~A~~al~ 400 (405)
++..+++++..|+......+.+-. -.|.++-++-+..++...+..|-...|++-
T Consensus 336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~ 395 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFR 395 (970)
T ss_pred HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHH
Confidence 999999999998877666665321 234444444444444444577777666653
No 55
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.07 E-value=1.4e-08 Score=94.24 Aligned_cols=311 Identities=16% Similarity=0.111 Sum_probs=197.8
Q ss_pred HHHHHhhcCCC-hHHHHHHHHHHHHhhccCCCCchHHHH-hcCc-H-HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537 76 PVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVI-RSGV-V-PRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (405)
Q Consensus 76 ~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~-l-~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~ 151 (405)
..++.....+. ......++..+.+.+-.. .| +.++ .++. + .....-++...+..+|..|+.+|.+-+.. .
T Consensus 136 ~~mv~nvg~eqp~~~k~~sl~~~gy~ces~-~P--e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v 209 (858)
T COG5215 136 EEMVRNVGDEQPVSGKCESLGICGYHCESE-AP--EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF---V 209 (858)
T ss_pred HHHHHhccccCchHhHHHHHHHHHHHhhcc-CH--HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---H
Confidence 33444444433 467788888888886543 33 3333 2332 2 33344556555578999999999883221 1
Q ss_pred HHHHHhC----CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHH
Q 015537 152 TKVVIDH----GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (405)
Q Consensus 152 ~~~~~~~----g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~ 227 (405)
+..+-.. -+++..+..-+.++.+++..+..||..|..-.-.+-...++. .+-.+.....++++.++...+...++
T Consensus 210 ~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~-aL~alt~~~mks~nd~va~qavEfWs 288 (858)
T COG5215 210 QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN-ALAALTGRFMKSQNDEVAIQAVEFWS 288 (858)
T ss_pred HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 1111111 234455556677899999999999999875433333344443 33333333338899999999999999
Q ss_pred HhhcCCCCCCh-----------------hhhhccHHHHHhhhcC-------CChHHHHHHHHHHHHhccCChhHHHHHHh
Q 015537 228 NFCRGKPQPPF-----------------DQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIE 283 (405)
Q Consensus 228 ~l~~~~~~~~~-----------------~~~~~~l~~L~~ll~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~ 283 (405)
.+|........ ..+.+++|.|+.+|.. +|..+-..|..||--++....+ .+++
T Consensus 289 ticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~ 365 (858)
T COG5215 289 TICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMR 365 (858)
T ss_pred HHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHH
Confidence 99876421111 1135688999999964 2344555566666555533322 2332
Q ss_pred cCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 015537 284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363 (405)
Q Consensus 284 ~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~ 363 (405)
. ++..+=+-+.++++.-+..++.++|.+..|.....-.-+-...+|.+...+.++ .-.++..++|+++.|+.+-+..+
T Consensus 366 p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va~~i 443 (858)
T COG5215 366 P-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVAMII 443 (858)
T ss_pred H-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHHHhc
Confidence 2 455555667888999999999999999998876555555568999999999987 88999999999999975433332
Q ss_pred HHHHHhCcHHHHHHH-HhcccccchhhhHHHHHHHHHhhhcc
Q 015537 364 QVIMHVHAFSIIVAF-FFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 364 ~~l~~~~~i~~L~~l-L~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
. ..|=++..++. |....+ .|.+--+.+|..-||.|
T Consensus 444 ~---p~~Hl~~~vsa~liGl~D---~p~~~~ncsw~~~nlv~ 479 (858)
T COG5215 444 S---PCGHLVLEVSASLIGLMD---CPFRSINCSWRKENLVD 479 (858)
T ss_pred C---ccccccHHHHHHHhhhhc---cchHHhhhHHHHHhHHH
Confidence 2 23333333333 222222 35788899999999976
No 56
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.05 E-value=3.7e-09 Score=96.44 Aligned_cols=216 Identities=19% Similarity=0.259 Sum_probs=153.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHh------cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR------SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~------~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~ 148 (405)
+-.+++.+ +.++++....+..+..+++.+ ....+.+.. ......|+.++.+++ +.++..|+.+|+.+....
T Consensus 60 ~l~lL~~~-~~~~d~v~yvL~li~dll~~~-~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 60 FLNLLNKL-SSNDDTVQYVLTLIDDLLSDD-PSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp --HHHHHH----HHHHHHHHHHHHHHHH-S-SSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHc-cCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHcC
Confidence 34555555 567899999999999998865 344444443 236788889888887 899999999999998875
Q ss_pred chhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh------hCCCchhH
Q 015537 149 SEHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL------NGQPKLSM 218 (405)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~----~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l------~~~~~~~~ 218 (405)
+....... .+.++.++..+.+ ++.+++..++.+|.++... +.+|..+.+.|+++.+.+++ .+..+..+
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 55444422 3556777777665 4567889999999999854 55899999999999999999 45668999
Q ss_pred HHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCC-ChHHHHHHHHHHHHhccCChh-HHHHHHhcCChHHHHHhcC
Q 015537 219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTND-KIQAVIEAGVFPRLAEFLM 295 (405)
Q Consensus 219 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~L~~lL~ 295 (405)
+..++.+++.|+............+++|.|..+++.. .++|..-++.++.|+.....+ ....++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 9999999999998854333333466899999998764 688999999999999977664 6777888887777666654
No 57
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=1.6e-08 Score=99.66 Aligned_cols=254 Identities=17% Similarity=0.205 Sum_probs=200.7
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
+++|.+++.|-|. --++.|+..|.+++... ...+..-..-|+.|.+++||+++. .+++.--+.+.+.|..-++.++
T Consensus 472 eQLPiVLQVLLSQ--vHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQ--VHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred HhcchHHHHHHHH--HHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence 4567777766653 56778999999998765 666777778899999999999998 8999999999999988889999
Q ss_pred HHHHhCCChHHHHHhhCC-C--CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537 153 KVVIDHGAVPIFVKLLYS-P--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~-~--~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l 229 (405)
..+++.++-.+++++|.. + +++-+..|+.+|+.|+.+-+..+....+.+.+...+..|+.++.+-++..++-+|..|
T Consensus 548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 999999889999999987 2 4578899999999999888888888889888998899995545788899999999999
Q ss_pred hcCCCCCChhhh-hccHHHHHhhhcCCChHHHHHHHHHHHHhccC----ChhHHHHH------------HhcCCh---HH
Q 015537 230 CRGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVF---PR 289 (405)
Q Consensus 230 ~~~~~~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~----~~~~~~~~------------~~~~~l---~~ 289 (405)
-.+.+...+.-. ..+...|..+|.++-++|+..|+.||+.+..+ .++....+ ++.-+. -.
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 888754444433 67778899999988999999999999998875 33332222 222222 25
Q ss_pred HHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchH
Q 015537 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP 330 (405)
Q Consensus 290 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~ 330 (405)
++.+++...+-++....-+++.++.+...+...+.....++
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~ 748 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLP 748 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhccc
Confidence 66777888999999999999999988776665554333333
No 58
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.92 E-value=7.6e-08 Score=87.49 Aligned_cols=266 Identities=14% Similarity=0.085 Sum_probs=184.9
Q ss_pred cCHHHHHHhhcCCChH--HHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch
Q 015537 73 ENLPVMVAGVWSNDSG--VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~--~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~ 150 (405)
+++..|+.++++.+.+ ++.+|...|..+++. ++.+.+...| +..++.+-+....++++...+.+|.++..++.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 5689999999998754 589999999999864 4566666665 444555555444478999999999999999999
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (405)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l 229 (405)
....++..|++..++--.+..+|.+..+++-+|+|++-+. ...+..+++..+-+-|..+- .+.|.-++.++|-+...|
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 9999999999999999888889999999999999998543 45566677777777777666 666888999999999999
Q ss_pred hcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHH
Q 015537 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (405)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l 309 (405)
+..+.-.....-.+.+..+-.++.+.||.-... --...+.+ ....-+++|+.+|++..-+.+.-+.+-+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG--------~~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQG--------RGPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhcc--------CChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 988644444444666666666676666542211 00111111 1123467899999876555444333333
Q ss_pred hHhhc--CChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 015537 310 GNIVT--GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (405)
Q Consensus 310 ~nl~~--~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl 355 (405)
..=++ .....++.+-+-|.+..|..+.+++ +..-.+-|.-+|.-|
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi 450 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI 450 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence 22221 1122345566779999999999877 654444444455444
No 59
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=7.8e-07 Score=85.80 Aligned_cols=278 Identities=17% Similarity=0.165 Sum_probs=208.6
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCh---
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSP--- 191 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~--- 191 (405)
.|+.|++-+.++.-.+=|..|+..|-.++. ++|..+...| +++|+..|+. .|+++...++.++.++..++.
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 488898888776657779999999999876 4676666654 8889999986 589999999999999985542
Q ss_pred ---h----------hHHHH-HhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhh---hhccHHHHHhhhcC
Q 015537 192 ---R----------CRDLV-LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ---VSPALPALAHLIHS 254 (405)
Q Consensus 192 ---~----------~~~~i-~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~---~~~~l~~L~~ll~~ 254 (405)
. +.+.+ ...+.+..++..+ ...|..|+..++..+.++-...|...... ...++..++.+|.+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 1 11222 2456677778887 77899999999999999988865443322 26678889999998
Q ss_pred CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC----CcchHHHHHHHHhHhhcCChhhHHHHHhcCchH
Q 015537 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP----SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP 330 (405)
Q Consensus 255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~ 330 (405)
.-..|+.+++..|..++.+++...+.+.=.+++.+|..++... ..-|...|+..|.|+...+......+.+.+.+|
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 8899999999999999988876655555558999999999532 235778899999999998888888899999999
Q ss_pred HHHHhhcCCC--c--------hhHH--HHHHHHHHHHhc-CC----HHHH-HHHHHhCcHHHHHHHHhcccccchhhhHH
Q 015537 331 CLLNLLSGNY--K--------KSIK--KEACWTVSNITA-GN----REQI-QVIMHVHAFSIIVAFFFMFLHFFFGAIIY 392 (405)
Q Consensus 331 ~L~~ll~~~~--~--------~~v~--~~a~~~L~nl~~-~~----~~~~-~~l~~~~~i~~L~~lL~~~~~~~~~~~vr 392 (405)
.|.++|.... + .++. ..+..++.-+.. ++ ..+. ..+.+.+++..|+.++-+..- ..+|+
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~v---p~dIl 334 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGV---PADIL 334 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCC---cHhHH
Confidence 9998886431 1 1222 335555555554 22 2223 345589999999999876542 35899
Q ss_pred HHHHHHHhhh
Q 015537 393 KLAIWLCLVT 402 (405)
Q Consensus 393 ~~A~~al~n~ 402 (405)
.++..++++.
T Consensus 335 tesiitvAev 344 (970)
T KOG0946|consen 335 TESIITVAEV 344 (970)
T ss_pred HHHHHHHHHH
Confidence 9988888764
No 60
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.79 E-value=8.9e-07 Score=82.55 Aligned_cols=307 Identities=14% Similarity=0.032 Sum_probs=192.4
Q ss_pred ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHH
Q 015537 86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165 (405)
Q Consensus 86 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~ 165 (405)
+..+++.|+.+|.+-+-.-+.....+--..-++...++.-+.++ .+++..|..||..|..-..+..+...+.-......
T Consensus 191 ~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~ 269 (858)
T COG5215 191 TSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTG 269 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777766221100000000001113444455555555 89999999999999887777777888877778888
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH----------------hcCChHHHHHhhhC-CC-----chhHHHHHH
Q 015537 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL----------------SQGGLVPLLAQLNG-QP-----KLSMLRNAT 223 (405)
Q Consensus 166 ~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~----------------~~~~i~~L~~~l~~-~~-----~~~~~~~a~ 223 (405)
+.+++++.++.-+++...+.+|.+..+..-... -..++|.|+++|.+ ++ +-.+-..+.
T Consensus 270 ~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~ 349 (858)
T COG5215 270 RFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS 349 (858)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHH
Confidence 899999999999999999888854322211111 12367888999854 22 234555555
Q ss_pred HHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHH
Q 015537 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303 (405)
Q Consensus 224 ~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 303 (405)
.||--+++... ...+.+++..+-.-+++++..-+..+.-+++.+.++..+..-.-+-...+|.+...+.++..-++.
T Consensus 350 sCLqlfaq~~g---d~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ 426 (858)
T COG5215 350 SCLQLFAQLKG---DKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKS 426 (858)
T ss_pred HHHHHHHHHhh---hHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhh
Confidence 56655554431 123456777777778888888999999999999988765544444456788888888877788999
Q ss_pred HHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC--CchhHHHHHHHHHHHHhcCCHHHH---HHHHH---hCcHHHH
Q 015537 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN--YKKSIKKEACWTVSNITAGNREQI---QVIMH---VHAFSII 375 (405)
Q Consensus 304 ~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~~v~~~a~~~L~nl~~~~~~~~---~~l~~---~~~i~~L 375 (405)
.+.|++|.|+.+-. ..+-..|-++..+....-+ ..+.+....+|..-|+..+-++.. ...+- ..++..|
T Consensus 427 ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~L 503 (858)
T COG5215 427 TTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNAL 503 (858)
T ss_pred HHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHH
Confidence 99999999985432 2222334333333222111 145788899999999987544433 12221 1233333
Q ss_pred HHHHhcccccchhhhHHHHHHHHHhhh
Q 015537 376 VAFFFMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 376 ~~lL~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
++.-.-.. .+...|-.+.-+|+.+
T Consensus 504 v~~t~~~~---Ne~n~R~s~fsaLgtl 527 (858)
T COG5215 504 VKGTELAL---NESNLRVSLFSALGTL 527 (858)
T ss_pred HHHHHhhc---cchhHHHHHHHHHHHH
Confidence 33322222 2346788777777754
No 61
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.76 E-value=6.9e-07 Score=81.41 Aligned_cols=273 Identities=16% Similarity=0.162 Sum_probs=187.0
Q ss_pred hHHHHhcCcHHHHHHHhcCCCC-HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 015537 109 IEEVIRSGVVPRFVEFLLREDY-PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNI 186 (405)
Q Consensus 109 ~~~~~~~g~l~~Li~lL~~~~~-~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl 186 (405)
.+.+...|++..|+.++..++. ..++.+|+..|-.+.. .++++.+...| +..++.+.+. ..++++...+..|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 4556677899999999998872 3569999999999877 67888888877 5555555554 5678999999999999
Q ss_pred hCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC-CCChhhh-hccHHHHHhhhcCCChHHHHHHH
Q 015537 187 AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPFDQV-SPALPALAHLIHSNDDEVLTDAC 264 (405)
Q Consensus 187 ~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~ 264 (405)
..++.+....+++.|+++.++--. ...++.+.+.++.+|.|+.-+.. .....++ ..+-.-|..+-.+.|+-.+..||
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 999988888889999999998888 77789999999999999988752 2222223 44555677777778888999999
Q ss_pred HHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhH
Q 015537 265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI 344 (405)
Q Consensus 265 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v 344 (405)
.+++-++...+ ....+..+|.+..+-.++.+-++.-... --...+.|. ...-++.|+.+|++. ..+.
T Consensus 329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EA 395 (832)
T KOG3678|consen 329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEA 395 (832)
T ss_pred HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhh
Confidence 99999886543 3345666777777767776656532211 111112221 123577888899876 5555
Q ss_pred HHHHHHHHHHHhc-CCHHHH-HHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537 345 KKEACWTVSNITA-GNREQI-QVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCL 400 (405)
Q Consensus 345 ~~~a~~~L~nl~~-~~~~~~-~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~ 400 (405)
+--+++-++-=++ .+.... +.+-+-|.|..|-++.++.+.- -...-++|.-.|+
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~v--aakfAseALtviG 451 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEV--AAKFASEALTVIG 451 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHH--HHHHHHHHHHHhc
Confidence 5444444443332 122222 2333689999999988754222 2344456655554
No 62
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=9.1e-06 Score=80.95 Aligned_cols=286 Identities=14% Similarity=0.179 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHhhccCCCCchHHHH-----hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHH
Q 015537 89 VQYECTTQFRKLLSIERSPPIEEVI-----RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI 163 (405)
Q Consensus 89 ~~~~a~~~l~~l~s~~~~~~~~~~~-----~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~ 163 (405)
-..-++.+|+++++.. |....++ --|.++.++.+|.....+.++.-|+.++.-++.. .++...+...|.+..
T Consensus 1741 ~v~m~LtAL~Nli~~n--PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN--PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHhhC--cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHH
Confidence 4456789999998763 4333333 2366788888887655589999999999887776 788888999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC---CCCChhh
Q 015537 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK---PQPPFDQ 240 (405)
Q Consensus 164 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~ 240 (405)
|+.+|.+ -|..++.++.+|+-+++... .....+++|++..+++++-...++..+..++..+..+.-.+ |...+..
T Consensus 1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence 9998886 57789999999999997766 55666788999999988877778888888888888776654 2111111
Q ss_pred h-------------------------------------------------------------------------------
Q 015537 241 V------------------------------------------------------------------------------- 241 (405)
Q Consensus 241 ~------------------------------------------------------------------------------- 241 (405)
+
T Consensus 1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence 1
Q ss_pred --------------------------hccHHHHHhhhcCCC--hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHh
Q 015537 242 --------------------------SPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293 (405)
Q Consensus 242 --------------------------~~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l 293 (405)
.+++..+.+++..+. .....-...++..|....+...+.+-..|.+|.++..
T Consensus 1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence 111122222221111 0111111122223333444444555556889999999
Q ss_pred cCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcH
Q 015537 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAF 372 (405)
Q Consensus 294 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i 372 (405)
+...+..+-..|++.|..++. +....+.+-....+..++..+... +...--||-+|..+.. ...+.+.+.++.|++
T Consensus 2056 m~~~n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQNTSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred HHhcCCcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence 988777788899999999875 344455555556666677777654 3445578888888876 455666777899999
Q ss_pred HHHHHHHhcc
Q 015537 373 SIIVAFFFMF 382 (405)
Q Consensus 373 ~~L~~lL~~~ 382 (405)
|.|+.+|...
T Consensus 2133 pyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2133 PYLLQLLDSS 2142 (2235)
T ss_pred HHHHHHhccc
Confidence 9999999743
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=7.4e-06 Score=79.50 Aligned_cols=135 Identities=13% Similarity=0.173 Sum_probs=81.6
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHH
Q 015537 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI 324 (405)
Q Consensus 245 l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~ 324 (405)
+..|-++|.+.|..++.-++..|.+....++..++... ..++.+|+++|..++..|+..+-.++..+. ..
T Consensus 315 iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr-----~tIleCL~DpD~SIkrralELs~~lvn~~N--v~--- 384 (866)
T KOG1062|consen 315 INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR-----STILECLKDPDVSIKRRALELSYALVNESN--VR--- 384 (866)
T ss_pred HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH-----HHHHHHhcCCcHHHHHHHHHHHHHHhcccc--HH---
Confidence 34455555555555666666666665555554444332 467888888888888888888877774433 22
Q ss_pred hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC----CHHHHHHH----------HHhCcHHHHHHHHhcccccchhhh
Q 015537 325 EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG----NREQIQVI----------MHVHAFSIIVAFFFMFLHFFFGAI 390 (405)
Q Consensus 325 ~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~----~~~~~~~l----------~~~~~i~~L~~lL~~~~~~~~~~~ 390 (405)
.++.-|+.+|.+. ++..|...+.-+.-++.. +.=+++.+ +...++..++.++.+...+..++.
T Consensus 385 --~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~ 461 (866)
T KOG1062|consen 385 --VMVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYA 461 (866)
T ss_pred --HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHH
Confidence 2345577777777 778887777777766641 11122222 344567777777777644444444
Q ss_pred HH
Q 015537 391 IY 392 (405)
Q Consensus 391 vr 392 (405)
++
T Consensus 462 ~~ 463 (866)
T KOG1062|consen 462 VL 463 (866)
T ss_pred HH
Confidence 43
No 64
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.65 E-value=1.5e-05 Score=74.64 Aligned_cols=238 Identities=18% Similarity=0.063 Sum_probs=152.2
Q ss_pred CHHHHHHhhc-CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 74 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
.++.++..|. .++..+...++..+. ..+ .+. .+..|+..|.+++ +.++..++.+|+.+-..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~---~~~-~~~--------~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~~----- 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL---AQE-DAL--------DLRSVLAVLQAGP-EGLCAGIQAALGWLGGR----- 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh---ccC-ChH--------HHHHHHHHhcCCC-HHHHHHHHHHHhcCCch-----
Confidence 3566777774 345566555444442 111 111 2788999998887 78999999999875332
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
...+.|+.+|.+.++.++..++.+++..-. ...+.+...| ++.++.++..++.++..+...
T Consensus 117 ------~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 117 ------QAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR 177 (410)
T ss_pred ------HHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence 567888999999999999888887777321 1345777888 788999999999999988765
Q ss_pred CCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (405)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl 312 (405)
..++.|...+.+.|+.|+..++++++.+-. +.- +..+..+...........+..+++..
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A---------~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLA---------WGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhH---------HHHHHHHHhccCccHHHHHHHHHHhC
Confidence 566677788899999999999999977732 221 23333333333333333333333222
Q ss_pred hcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHH
Q 015537 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIY 392 (405)
Q Consensus 313 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr 392 (405)
+.+ ..++.|..++.++ .++..++++++.+ +++. .++.|+..+... .++
T Consensus 237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~l--g~p~---------av~~L~~~l~d~-------~~a 284 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLV--GDVE---------AAPWCLEAMREP-------PWA 284 (410)
T ss_pred --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHc--CCcc---------hHHHHHHHhcCc-------HHH
Confidence 111 3456666666665 3777777777766 2332 345555555433 366
Q ss_pred HHHHHHHhh
Q 015537 393 KLAIWLCLV 401 (405)
Q Consensus 393 ~~A~~al~n 401 (405)
+.|.+++..
T Consensus 285 R~A~eA~~~ 293 (410)
T TIGR02270 285 RLAGEAFSL 293 (410)
T ss_pred HHHHHHHHH
Confidence 666666653
No 65
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.65 E-value=3.3e-06 Score=78.17 Aligned_cols=314 Identities=17% Similarity=0.108 Sum_probs=196.2
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
+.+..++-+++.+++..+.+.+|.++.. ....+.+.+.++--.++.-|..++ ...-+++|+..+..+..... ..+
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~- 103 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK- 103 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc-
Confidence 4444455566699999999999999865 466777888886666677776543 35568899999888777521 111
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 234 (405)
.+..|++..++.+..+++..++..|+.+|..++-.+| +.+.+.|++..|++.+.. +..++...++.++.++...+.
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcc
Confidence 1244789999999999999999999999999998888 578899999999999954 555588999999999998864
Q ss_pred CCChhhhhccHHHHHhhhc-C------CCh--HHHHHHHHHHHHhccCChhHHHHHHhc-CChHHHHHhcCCCCcchHHH
Q 015537 235 QPPFDQVSPALPALAHLIH-S------NDD--EVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMHPSPSVLIP 304 (405)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~-~------~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~ 304 (405)
.........-+..++.-+. . ++. +....+..++..+...=+...-.-.+. ..+..++..|..++++++..
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 4443333222333332221 1 222 345555666666554322221111111 46788999999999999999
Q ss_pred HHHHHhHhhcCCh-hhH------HHHHhcCchHHHHHhhc--CCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHhCcHHH
Q 015537 305 ALRTVGNIVTGDD-MQT------QCVIEYQALPCLLNLLS--GNYKKSIKKEACWTVSNITAGNR-EQIQVIMHVHAFSI 374 (405)
Q Consensus 305 a~~~l~nl~~~~~-~~~------~~~~~~g~l~~L~~ll~--~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~ 374 (405)
.+..+..+..-.. .-. ......|....--++-. .+... ....-..-=.|+..+.- -....++++|+++.
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~-~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~ 338 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKS-ILPHRSSKRPNLVNHYLALLLAILIEAGLLEA 338 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccccc-ccCccccccccHHHHHHHHHHHHHHHcChHHH
Confidence 9988888775322 111 11111222100000000 00000 00000001122222111 22344569999999
Q ss_pred HHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537 375 IVAFFFMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 375 L~~lL~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
|+++..+..+. .+.+.|+..|+..
T Consensus 339 L~~li~~~~d~----~l~~KAtlLL~el 362 (371)
T PF14664_consen 339 LVELIESSEDS----SLSRKATLLLGEL 362 (371)
T ss_pred HHHHHhcCCCc----hHHHHHHHHHHHH
Confidence 99999887555 6899999998864
No 66
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=8.5e-05 Score=71.53 Aligned_cols=219 Identities=17% Similarity=0.164 Sum_probs=159.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
-+.++.+|.++-+-++..|+..+.++.-.- .+ .+ .-.+|.|.+-|.+++ |.++-.|..+++.++..+|.+--
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkY-Pe---Al--r~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL- 217 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PE---AL--RPCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL- 217 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hH---hH--hhhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc-
Confidence 477888888888889999988887775322 11 11 124889999999888 89999999999999998777532
Q ss_pred HHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh--hc
Q 015537 155 VIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF--CR 231 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l--~~ 231 (405)
..-|.+..+|-+ .+.=+.-..+..+++|+--.|-.. ...+++|.+++.+..-.++...+..++... +.
T Consensus 218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 345777887765 344455667788888876666443 336789999994444456666666665433 33
Q ss_pred CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (405)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n 311 (405)
+. ......+.-+++.|-.++.++|+....-++.+++.+....+..++.. -+.++.+|.+.|++++..|+..+--
T Consensus 289 g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 289 GM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYG 362 (877)
T ss_pred CC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHH
Confidence 32 23334446678888889999999999999999999998887765533 3688999999999999999999988
Q ss_pred hhcCC
Q 015537 312 IVTGD 316 (405)
Q Consensus 312 l~~~~ 316 (405)
++...
T Consensus 363 mVskk 367 (877)
T KOG1059|consen 363 MVSKK 367 (877)
T ss_pred Hhhhh
Confidence 87543
No 67
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=3.6e-07 Score=84.47 Aligned_cols=281 Identities=16% Similarity=0.198 Sum_probs=187.4
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 015537 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191 (405)
Q Consensus 112 ~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~ 191 (405)
+.+..+.+.|+++|+.++ ..+..-++..++|..-.-+..+..+++.|+|..|+.++.+.+..++..+.|.+.++..+..
T Consensus 427 L~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq 505 (743)
T COG5369 427 LLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ 505 (743)
T ss_pred ccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc
Confidence 456778999999999877 6788888889999887767788899999999999999999999999999999999986543
Q ss_pred h-hHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC--CChhhh------hccHHHHHhhhcCCChHHHHH
Q 015537 192 R-CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ--PPFDQV------SPALPALAHLIHSNDDEVLTD 262 (405)
Q Consensus 192 ~-~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~------~~~l~~L~~ll~~~d~~v~~~ 262 (405)
. .+-..+..-++..++.+. ++++-.++..+...+.|+.-+... ...... .-+...++..+...+|--...
T Consensus 506 ~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~ 584 (743)
T COG5369 506 KNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE 584 (743)
T ss_pred chhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence 2 233455666889999999 899999999999999999774311 111111 235567777788888877788
Q ss_pred HHHHHHHhccCChhHHHHHHhc-CChHHHHHhcC----C-------CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchH
Q 015537 263 ACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLM----H-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP 330 (405)
Q Consensus 263 a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~----~-------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~ 330 (405)
.+..|.+++..++...+.+.+. ..+..+...|. . ....+..+-....-++..+.+.....+... |
T Consensus 585 ~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p 661 (743)
T COG5369 585 GCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---P 661 (743)
T ss_pred hHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---C
Confidence 8999999887766555544443 44444444441 1 112233333333333333222111111100 1
Q ss_pred HHHHhhcCC--CchhHHHHHHHHHHHHhc---CC------HHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHH
Q 015537 331 CLLNLLSGN--YKKSIKKEACWTVSNITA---GN------REQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLC 399 (405)
Q Consensus 331 ~L~~ll~~~--~~~~v~~~a~~~L~nl~~---~~------~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al 399 (405)
.+-..=.++ .+.++--+..|.+-|+.. ++ .+.++.+.+.|+-.-|..+.... ++.||..+.-||
T Consensus 662 ~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~-----Sl~vrek~~taL 736 (743)
T COG5369 662 HLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKD-----SLIVREKIGTAL 736 (743)
T ss_pred CccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccC-----cHHHHHHHHHHH
Confidence 111111111 144577788898888753 22 36677777888777777765443 357999988888
Q ss_pred hhh
Q 015537 400 LVT 402 (405)
Q Consensus 400 ~n~ 402 (405)
-|.
T Consensus 737 ~~l 739 (743)
T COG5369 737 ENL 739 (743)
T ss_pred Hhh
Confidence 764
No 68
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.55 E-value=1.8e-07 Score=57.05 Aligned_cols=41 Identities=27% Similarity=0.564 Sum_probs=37.6
Q ss_pred ChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 316 ~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
++++.+.+++.|++|.|+.+|.++ ++.++++|+|+|+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 356788899999999999999988 99999999999999974
No 69
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.54 E-value=3.1e-05 Score=71.76 Aligned_cols=186 Identities=28% Similarity=0.315 Sum_probs=144.9
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
.++.+++.+.+.++.++..|+..+..+-.. -.++.+..++.+.+ +.++..|+.+|+.+-..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~------ 104 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGDP------ 104 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCCh------
Confidence 578899999999999999999887666322 25899999999998 89999999988887442
Q ss_pred HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCc------------hhHHH
Q 015537 154 VVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK------------LSMLR 220 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~------------~~~~~ 220 (405)
..++.|+.++. +++..++..+.++|+.+-... .+.+++..+ .+.. ..++.
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l-~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEAL-QDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHh-ccchhhhhhhhccchHHHHHH
Confidence 46889999998 589999999999999984221 366777777 3322 13455
Q ss_pred HHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcc
Q 015537 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300 (405)
Q Consensus 221 ~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 300 (405)
.+...+..+-.. ..++.+..++.+.+..++..+..+++.+.... ..+.+.+...+.+.+..
T Consensus 168 ~a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 168 AAAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence 555555555433 56778888898888999999999999987655 23457888899999999
Q ss_pred hHHHHHHHHhHhhc
Q 015537 301 VLIPALRTVGNIVT 314 (405)
Q Consensus 301 v~~~a~~~l~nl~~ 314 (405)
++..++..+|.+-.
T Consensus 229 vr~~~~~~l~~~~~ 242 (335)
T COG1413 229 VRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHhcccCc
Confidence 99999999998764
No 70
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.52 E-value=7.2e-06 Score=78.85 Aligned_cols=231 Identities=16% Similarity=0.122 Sum_probs=148.4
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH--HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC-CC
Q 015537 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR--DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QP 236 (405)
Q Consensus 160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~--~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~ 236 (405)
++..++..|++.++.++++++..++.++.--..+. ..+...|. .|...| ...+++++-.++.++..++.... ..
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHHHhccccc
Confidence 45667778899999999999999999883222221 12222222 345555 77789998888888887776531 12
Q ss_pred ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc--
Q 015537 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT-- 314 (405)
Q Consensus 237 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~-- 314 (405)
...-+.+++|.|...|++....|+.+++..++.+++..++.+..=-=..+.--|+.+|.+.+.+++..|..++|-|+.
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence 223347899999999999999999999999999998877643211101234457788888888999999999998884
Q ss_pred CChhhHHHHH-----------------------hcC---chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHH
Q 015537 315 GDDMQTQCVI-----------------------EYQ---ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQVIM 367 (405)
Q Consensus 315 ~~~~~~~~~~-----------------------~~g---~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~ 367 (405)
|..+....++ .+| ++|.|+.=...+ +..|+..+..+++.+.....+ ..+++
T Consensus 957 GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~FeyigemskdYi- 1034 (1172)
T KOG0213|consen 957 GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGEMSKDYI- 1034 (1172)
T ss_pred CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHHHhhhHH-
Confidence 2222221111 134 344444444455 677888888888888652111 12222
Q ss_pred HhCcHHHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537 368 HVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLV 401 (405)
Q Consensus 368 ~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n 401 (405)
.-+.|.|-+.|...+ +--|.-|.-++.+
T Consensus 1035 -yav~PlleDAlmDrD-----~vhRqta~~~I~H 1062 (1172)
T KOG0213|consen 1035 -YAVTPLLEDALMDRD-----LVHRQTAMNVIKH 1062 (1172)
T ss_pred -HHhhHHHHHhhcccc-----HHHHHHHHHHHHH
Confidence 345677777764431 2356666655544
No 71
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.50 E-value=4.1e-05 Score=73.09 Aligned_cols=265 Identities=17% Similarity=0.139 Sum_probs=177.7
Q ss_pred HHHHHHhhccCCCCchHHHHhcCcHHHHHHHh---------cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHH
Q 015537 94 TTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL---------LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF 164 (405)
Q Consensus 94 ~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL---------~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L 164 (405)
+.+|+-+ +.+ ....+.+....++..|.++- ....++.+..+|+.||+|+...++..|+.+++.|..+.+
T Consensus 2 L~~LRiL-sRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLRIL-SRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHHHH-ccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 3444444 443 34555666666677777665 333348999999999999999999999999999999999
Q ss_pred HHhhCCC-----CHHHHHHHHHHHHHhhCCChhhHHHHHh-cCChHHHHHhhh---------CC-------CchhHHHHH
Q 015537 165 VKLLYSP-----SDDVREQAVWALGNIAGDSPRCRDLVLS-QGGLVPLLAQLN---------GQ-------PKLSMLRNA 222 (405)
Q Consensus 165 ~~lL~~~-----~~~i~~~a~~~L~nl~~~~~~~~~~i~~-~~~i~~L~~~l~---------~~-------~~~~~~~~a 222 (405)
+..|+.. +.++.......|.-+....+..+..+.+ .+++..++..+. .. .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999875 7888888888888888777667765554 467777766652 01 256678899
Q ss_pred HHHHHHhhcCCCCCCh----hhhhccHHHHHhhh---cCC--ChHHHHHHHHHHHHhccCChhH-----------HHHHH
Q 015537 223 TWTLSNFCRGKPQPPF----DQVSPALPALAHLI---HSN--DDEVLTDACWALSYLSDGTNDK-----------IQAVI 282 (405)
Q Consensus 223 ~~~l~~l~~~~~~~~~----~~~~~~l~~L~~ll---~~~--d~~v~~~a~~~l~~l~~~~~~~-----------~~~~~ 282 (405)
+..+.|+....+.... .....++..+..++ ..+ .......++.+|.++--..... .....
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 9999999887644332 22344445555552 111 2456677777777763211111 00001
Q ss_pred hcCChHHHHHhcCC-----C---CcchHHHHHHHHhHhhcCChhhHHHHHh----------------cCchHHHHHhhcC
Q 015537 283 EAGVFPRLAEFLMH-----P---SPSVLIPALRTVGNIVTGDDMQTQCVIE----------------YQALPCLLNLLSG 338 (405)
Q Consensus 283 ~~~~l~~L~~lL~~-----~---~~~v~~~a~~~l~nl~~~~~~~~~~~~~----------------~g~l~~L~~ll~~ 338 (405)
....+..|+.+|.. . -.+...+.+.+|.+++......++.+.. ..+-..|++++.+
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~ 319 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS 319 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence 12345666666631 1 1357788999999999876655554432 2477889999999
Q ss_pred CCchhHHHHHHHHHHHHhcCCHH
Q 015537 339 NYKKSIKKEACWTVSNITAGNRE 361 (405)
Q Consensus 339 ~~~~~v~~~a~~~L~nl~~~~~~ 361 (405)
. .+.+|..++-.|..+|..+..
T Consensus 320 ~-~~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 320 P-DPQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred C-CchHHHHHHHHHHHHHhhhHH
Confidence 9 699999999888888865544
No 72
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=0.00019 Score=63.09 Aligned_cols=300 Identities=17% Similarity=0.173 Sum_probs=190.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCc---hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP---IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~---~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~ 151 (405)
.|.+-..|..++..+...++..+..++...+... +..++..|+++.++..+-.++ .++-..|...+..|+.. +..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialf-paa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALF-PAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhc-HHH
Confidence 3555556667788899999988888876542222 344568899999999999888 79999999999999887 777
Q ss_pred HHHHHhCCChHHH--HHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHH---
Q 015537 152 TKVVIDHGAVPIF--VKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL--- 226 (405)
Q Consensus 152 ~~~~~~~g~i~~L--~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l--- 226 (405)
...+.+......+ ..+--..+.-.+...+..+..+.+-++.....+...|.+..|..-|....|.-++.+++...
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 7777777666443 22333345556777788888888888888888888888888877774445554444444443
Q ss_pred -------------------HHhhcCCCCCChhhh---------------------------hccHHHHHhhhcCCChHHH
Q 015537 227 -------------------SNFCRGKPQPPFDQV---------------------------SPALPALAHLIHSNDDEVL 260 (405)
Q Consensus 227 -------------------~~l~~~~~~~~~~~~---------------------------~~~l~~L~~ll~~~d~~v~ 260 (405)
+|+..+....++... -..+.....++..+|++.+
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 333333211111100 0011122345566788888
Q ss_pred HHHHHHHHHhccCChhHHHHHHhcCC--hHHHHHhcCC-CCcchHHHHHHHHhHhhcCC---hh----------hHHHHH
Q 015537 261 TDACWALSYLSDGTNDKIQAVIEAGV--FPRLAEFLMH-PSPSVLIPALRTVGNIVTGD---DM----------QTQCVI 324 (405)
Q Consensus 261 ~~a~~~l~~l~~~~~~~~~~~~~~~~--l~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~---~~----------~~~~~~ 324 (405)
..+..+++.+-... +..+.+.+.|- ...++.-..+ +...-+..++++|.+|+... ++ .+..+.
T Consensus 322 eaAiDalGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclif 400 (524)
T KOG4413|consen 322 EAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIF 400 (524)
T ss_pred HHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHH
Confidence 88888888876433 34455555542 3333333322 22334667888888887421 11 111111
Q ss_pred h-------cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH
Q 015537 325 E-------YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAF 378 (405)
Q Consensus 325 ~-------~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l 378 (405)
+ ..-++.+..+++.+ .+.++-.+..++..+++..-.+...+-+.|++....+.
T Consensus 401 daaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqPWalkeifakeefieiVtDa 460 (524)
T KOG4413|consen 401 DAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDA 460 (524)
T ss_pred HHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeeccc
Confidence 1 13456777788887 89999999999999977654444444467777766653
No 73
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.49 E-value=2.6e-07 Score=56.39 Aligned_cols=41 Identities=41% Similarity=0.863 Sum_probs=38.3
Q ss_pred CchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 015537 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG 188 (405)
Q Consensus 148 ~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~ 188 (405)
++++++.+++.|++|.|+.+|.++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36789999999999999999999999999999999999973
No 74
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.45 E-value=6.1e-06 Score=79.35 Aligned_cols=259 Identities=17% Similarity=0.190 Sum_probs=163.8
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCC-CCchHHHHhcCcHHHHHHHhcCCCCHHHHHHH---HHHHHHHhcCCchh
Q 015537 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA---AWALTNIASGTSEH 151 (405)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a---~~~L~ni~~~~~~~ 151 (405)
..++..|++..+.++.+|+..+..++.--. ..--..+...|+ .|.+.|.... |++.-.. +.++.|...- ...
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeey-pEvLgsILgAikaI~nvigm-~km 877 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEY-PEVLGSILGAIKAIVNVIGM-TKM 877 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCccc-HHHHHHHHHHHHHHHHhccc-ccc
Confidence 445566778888899988877766642210 011112223332 3567777666 7765444 4444444322 111
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
+..+ .+++|.|...|++....++++++..++.||..++++...---..+--.|+.+| ..-+.++++++..++..++.
T Consensus 878 ~pPi--~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelL-kahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 878 TPPI--KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELL-KAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred CCCh--hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHH
Confidence 1111 27899999999999999999999999999987765322111112334677777 67788999999999999998
Q ss_pred CC-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHh
Q 015537 232 GK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (405)
Q Consensus 232 ~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~ 310 (405)
.- | ..++..|+.-|+..+-.-+.....+++-.+..+.-. .++|.|+.--..++..|+...+++++
T Consensus 955 aIGP-------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF-------tVLPalmneYrtPe~nVQnGVLkals 1020 (1172)
T KOG0213|consen 955 AIGP-------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF-------TVLPALMNEYRTPEANVQNGVLKALS 1020 (1172)
T ss_pred hcCH-------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch-------hhhHHHHhhccCchhHHHHhHHHHHH
Confidence 64 2 345566666666555444444444444444322211 34677766667788889999999988
Q ss_pred HhhcCCh-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 015537 311 NIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (405)
Q Consensus 311 nl~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 358 (405)
.+...-. ...+++ .-+.|.|.+.|.+. +..-|..|+-++..++-+
T Consensus 1021 f~FeyigemskdYi--yav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1021 FMFEYIGEMSKDYI--YAVTPLLEDALMDR-DLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HHHHHHHHHhhhHH--HHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcC
Confidence 8764322 122222 24678888888888 888888888888777653
No 75
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=0.00015 Score=63.18 Aligned_cols=270 Identities=16% Similarity=0.218 Sum_probs=172.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHH--hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~--~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
+..+++++.+.+|.++..|+..+..+... ..+.+. +.-.++.+.+++.... + -..|+.+|.|++.. ...+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~-~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQK-EELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhh-HHHH
Confidence 56889999999999999999888877543 233333 2345788999998876 4 67889999999987 7778
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc-----CChHHHHHhh-hCCCc-hhHHHHHHHH
Q 015537 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-----GGLVPLLAQL-NGQPK-LSMLRNATWT 225 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~-----~~i~~L~~~l-~~~~~-~~~~~~a~~~ 225 (405)
+.+++. .+..++..+-++...+....+..|.|++.+...++...... .++..+...+ ..+.+ ..-..+.+..
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 777776 67777777777777788899999999999887666554322 2333344433 22222 2345677788
Q ss_pred HHHhhcCCCCCChhhhhccHH--HHHhhhcCCChHHHH-HHHHHHHHhccCChhHHHHHHhc--CChHHHH---------
Q 015537 226 LSNFCRGKPQPPFDQVSPALP--ALAHLIHSNDDEVLT-DACWALSYLSDGTNDKIQAVIEA--GVFPRLA--------- 291 (405)
Q Consensus 226 l~~l~~~~~~~~~~~~~~~l~--~L~~ll~~~d~~v~~-~a~~~l~~l~~~~~~~~~~~~~~--~~l~~L~--------- 291 (405)
++|+++.............+| .+..+-. .+..++. ..+.+|.|.|.....+- .++.. .++|.++
T Consensus 156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~-~lL~e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHE-VLLDESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHH-HHhcchHHHHHHHHhhcCCcccc
Confidence 888888754333333322222 3444433 5555553 45667777664433222 22221 2233322
Q ss_pred ------------HhcC-----CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537 292 ------------EFLM-----HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (405)
Q Consensus 292 ------------~lL~-----~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n 354 (405)
++|. .+++.++..-+.+|--+++ +...++.+.+.|+.+.+-.+=....++.++ ++|.-+++
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~-~ace~vvq 311 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIR-EACEQVVQ 311 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHH-HHHHHHHH
Confidence 2331 2466788888888887775 445677788888888777776666455555 45555555
Q ss_pred Hhc
Q 015537 355 ITA 357 (405)
Q Consensus 355 l~~ 357 (405)
+..
T Consensus 312 ~Lv 314 (353)
T KOG2973|consen 312 MLV 314 (353)
T ss_pred HHH
Confidence 543
No 76
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.44 E-value=7.9e-05 Score=69.91 Aligned_cols=209 Identities=18% Similarity=0.057 Sum_probs=154.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
+..++..|.+.++.++..++..|..+-. .+..+.|+.+|++.+ +.++..++.+++....
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~------------~~a~~~L~~~L~~~~-p~vR~aal~al~~r~~-------- 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG------------RQAEPWLEPLLAASE-PPGRAIGLAALGAHRH-------- 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc------------hHHHHHHHHHhcCCC-hHHHHHHHHHHHhhcc--------
Confidence 7889999988888899999998876621 235788999998888 8999888877776221
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 234 (405)
...+.+..+|++.++.++..++.+|+.+-.. ..++.|...+ .+.++.|+..+++++..+-..
T Consensus 147 ----~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al-~d~~~~VR~aA~~al~~lG~~-- 208 (410)
T TIGR02270 147 ----DPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYL-RDSDPEVRFAALEAGLLAGSR-- 208 (410)
T ss_pred ----ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHH-cCCCHHHHHHHHHHHHHcCCH--
Confidence 3467899999999999999999999998532 2344566666 899999999999999776332
Q ss_pred CCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~ 314 (405)
..++.+..+....+......+...+... +.+ .+++.|..+++.+. ++..++.++|.+-.
T Consensus 209 --------~A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 209 --------LAWGVCRRFQVLEGGPHRQRLLVLLAVA--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGD 267 (410)
T ss_pred --------hHHHHHHHHHhccCccHHHHHHHHHHhC--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCC
Confidence 3455556544444444443333333332 222 35688889997754 89999999997642
Q ss_pred CChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 315 ~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
...++.|+..+.+. .+++.|.++++.|+.
T Consensus 268 -----------p~av~~L~~~l~d~---~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 268 -----------VEAAPWCLEAMREP---PWARLAGEAFSLITG 296 (410)
T ss_pred -----------cchHHHHHHHhcCc---HHHHHHHHHHHHhhC
Confidence 24688889988776 499999999999986
No 77
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=0.00014 Score=70.16 Aligned_cols=218 Identities=15% Similarity=0.143 Sum_probs=161.7
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (405)
+-+-++.+|+++. |-++..|+.++..+.-..|+..+ ..+|.|..-|.++++.|+..|+.+++.||..+|..-
T Consensus 145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny-- 216 (877)
T KOG1059|consen 145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY-- 216 (877)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--
Confidence 4556777888887 89999999999998886666433 468999999999999999999999999998887531
Q ss_pred HHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCC-hHHHHHHHHHHHH--hccC
Q 015537 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALSY--LSDG 273 (405)
Q Consensus 197 i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~--l~~~ 273 (405)
...-|.+.++|..+.+--+....+..+.+|+--.| ..-..+++.|..+++++. -.+...++.++.. ++.+
T Consensus 217 ---L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 217 ---LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ---ccccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 12446677777677787788888888888876644 223578888889988765 4555566555543 3333
Q ss_pred ChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 015537 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (405)
Q Consensus 274 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~ 353 (405)
.++....+. -.+..|-.++.+.|+.++.-++.+++-|....+...+. .-+.++++|.+. |+.||-.|.-.|-
T Consensus 290 ~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLY 361 (877)
T ss_pred CCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHH
Confidence 222211111 13577888889999999999999999999766654442 356789999999 9999999999988
Q ss_pred HHhc
Q 015537 354 NITA 357 (405)
Q Consensus 354 nl~~ 357 (405)
-+..
T Consensus 362 gmVs 365 (877)
T KOG1059|consen 362 GMVS 365 (877)
T ss_pred HHhh
Confidence 8864
No 78
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=0.00012 Score=69.55 Aligned_cols=233 Identities=16% Similarity=0.145 Sum_probs=163.8
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (405)
++..|+.-++.+. +.+|...+.||.-+........ ..-+.+.+.+++......-+..+.+.++.+..+... ..
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hh
Confidence 4777888888888 8999999999877655321111 112467778888888888888999999999877653 45
Q ss_pred HHhcCChHHHHHhhhCCCchhHHH-HHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCCh
Q 015537 197 VLSQGGLVPLLAQLNGQPKLSMLR-NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (405)
Q Consensus 197 i~~~~~i~~L~~~l~~~~~~~~~~-~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (405)
+.+.+++..+...+ .+......+ .+..+.-..+..-.......+...+|.++.-+.+..+.++..+..+.-.+...-+
T Consensus 170 ~~~~~~l~~l~~ai-~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAI-IDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhhhhHHHHHHHHh-cccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 56777888888888 444444433 4555555555443444445556777777777777788999888887776654332
Q ss_pred h-HHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537 276 D-KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (405)
Q Consensus 276 ~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n 354 (405)
. ..+ -+++.++.-+....+.....++..+|.++...+.+.. ..-..++|.+.+.|.+. ++.+|+.+--++-+
T Consensus 249 ~~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 249 AYAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLK 321 (569)
T ss_pred cchhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 2 222 1245555555444788889999999999887776665 44558999999999999 99999999999999
Q ss_pred Hhc--CCHHHHHH
Q 015537 355 ITA--GNREQIQV 365 (405)
Q Consensus 355 l~~--~~~~~~~~ 365 (405)
++. .+++ |+.
T Consensus 322 ~~svidN~d-I~~ 333 (569)
T KOG1242|consen 322 FGSVIDNPD-IQK 333 (569)
T ss_pred HHHhhccHH-HHH
Confidence 986 3444 443
No 79
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=6.6e-06 Score=79.78 Aligned_cols=247 Identities=17% Similarity=0.163 Sum_probs=155.9
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (405)
+...+...+++.+ +.++..|+.+..++-..+ .+.+.+.|.++.|-.++.++++.+..+|+.+|..|....+..-..
T Consensus 122 ~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 122 LCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 3567777788877 899999999998886653 446778899999999999999999999999999998665431111
Q ss_pred HHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChh
Q 015537 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (405)
Q Consensus 197 i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (405)
.....+++.+...-+.-.-..-+..+-.++...|... .....++..+...+++.++.+...+...+.++......
T Consensus 198 ----~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 198 ----ELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred ----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence 1223333332222233333444455566666655544 33456777888888999988888888888887765444
Q ss_pred HHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHH--------------------------hcCchH
Q 015537 277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI--------------------------EYQALP 330 (405)
Q Consensus 277 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~--------------------------~~g~l~ 330 (405)
. ...+-..+-+.++.++++.. +++..+++=+.-+....+.....-+ +.++-+
T Consensus 273 ~-~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q 350 (734)
T KOG1061|consen 273 V-NELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ 350 (734)
T ss_pred H-HHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH
Confidence 2 22333456677888887766 7777777766666654442111000 111222
Q ss_pred HHHHhhcCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh
Q 015537 331 CLLNLLSGN--YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFF 380 (405)
Q Consensus 331 ~L~~ll~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~ 380 (405)
.+-.+.... .+....+++.+++++++..-.+. +++++.|++++.
T Consensus 351 vl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~ 396 (734)
T KOG1061|consen 351 VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLE 396 (734)
T ss_pred HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHh
Confidence 222222211 16778889999999998643321 344444444444
No 80
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=6.7e-06 Score=79.73 Aligned_cols=299 Identities=16% Similarity=0.171 Sum_probs=165.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
...+.+.++++++.++..|+...+++- ....+...+.|+++.|.+++.+++ |.+...|+.+|..|...++.....
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~----~~~~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLF----DIDPDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhh----cCChhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCCCCCcc
Confidence 467777888889999999999998885 455667788999999999999777 899999999999998876541111
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-HHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~-~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
.+..-.+.. +|..-+.-.-..-+.+|.+++.+.+.- ++. ..++..+...| .+.+..+.-.+...+.++....
T Consensus 198 ~l~~~~~~~---lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea---~~i~~r~~p~L-qh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 198 ELNPQLINK---LLEALNECTEWGQIFILDCLAEYVPKDSREA---EDICERLTPRL-QHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred cccHHHHHH---HHHHHHHhhhhhHHHHHHHHHhcCCCCchhH---HHHHHHhhhhh-ccCCcceEeehHHHHHHHHHHH
Confidence 111111222 222222222223333334444332210 011 11233333334 4444444444444444444332
Q ss_pred CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhH----------------------HHHH----HhcC--
Q 015537 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK----------------------IQAV----IEAG-- 285 (405)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~----------------------~~~~----~~~~-- 285 (405)
+..........-+.++.++.+.. +++--++.-+.-+....++. .+.+ .+.+
T Consensus 271 ~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~ 349 (734)
T KOG1061|consen 271 KQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLA 349 (734)
T ss_pred HHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHH
Confidence 22111222233333333333222 33322222222221111110 0000 0001
Q ss_pred -ChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 015537 286 -VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (405)
Q Consensus 286 -~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (405)
++.-+...-..-+.+....++++||+++..-+.. .+.++.|+.++... ...+..+++-.+.++....|...+
T Consensus 350 qvl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~-~~yvvqE~~vvi~dilRkyP~~~~ 422 (734)
T KOG1061|consen 350 QVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETK-VDYVVQEAIVVIRDILRKYPNKYE 422 (734)
T ss_pred HHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhc-ccceeeehhHHHHhhhhcCCCchh
Confidence 2233333334457788889999999998543322 57899999999988 778888999999999886665333
Q ss_pred HHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537 365 VIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 365 ~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
. +++.+..-+.+- .+|+.|..-.|.||..
T Consensus 423 ~-----vv~~l~~~~~sl----~epeak~amiWilg~y 451 (734)
T KOG1061|consen 423 S-----VVAILCENLDSL----QEPEAKAALIWILGEY 451 (734)
T ss_pred h-----hhhhhccccccc----CChHHHHHHHHHHhhh
Confidence 2 344444444444 4568999999998854
No 81
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.41 E-value=8.1e-06 Score=76.99 Aligned_cols=261 Identities=17% Similarity=0.157 Sum_probs=166.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCC-CCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
+...+..|++..+.++..|+.....++.--. -.....+...| ..|.+.|.... |++.-..+.++..|.+. ...+.
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~y-pEvLgsil~Ai~~I~sv-~~~~~ 681 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDY-PEVLGSILKAICSIYSV-HRFRS 681 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCccc-HHHHHHHHHHHHHHhhh-hcccc
Confidence 5677888899999999998876655531100 01112222333 23566666666 77765555555554442 11110
Q ss_pred -HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 154 -VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 154 -~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
.-=-.|++|.|...|++....++.+.+..++.||..+|+....---..+--.|++.| .+.+.+++++|..++..+++.
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~L-ks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSL-KSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHhhHHHHHhhhhhhhhHHhh
Confidence 000138999999999999999999999999999988775322111112334577777 778999999999999999886
Q ss_pred C-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537 233 K-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (405)
Q Consensus 233 ~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n 311 (405)
- | ..++..|+.-|+..+-.-+.....+++-.+..+.- ..++|.|+.--..++..++...+++++.
T Consensus 761 iGP-------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~f 826 (975)
T COG5181 761 IGP-------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMCF 826 (975)
T ss_pred cCH-------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHHH
Confidence 4 2 34566666666666555555555555444432211 1345666666667788888888888877
Q ss_pred hhcCCh-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 312 IVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 312 l~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
+..... ...+++ .-+.|.|-+.|.+. ++.-|..|..++..++-
T Consensus 827 mFeyig~~s~dYv--y~itPlleDAltDr-D~vhRqta~nvI~Hl~L 870 (975)
T COG5181 827 MFEYIGQASLDYV--YSITPLLEDALTDR-DPVHRQTAMNVIRHLVL 870 (975)
T ss_pred HHHHHHHHHHHHH--HHhhHHHHhhhccc-chHHHHHHHHHHHHHhc
Confidence 764222 122222 24678888888888 88888888888887765
No 82
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.40 E-value=2.2e-05 Score=68.45 Aligned_cols=230 Identities=15% Similarity=0.168 Sum_probs=158.4
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCC-ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 015537 123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG-AVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLS 199 (405)
Q Consensus 123 ~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g-~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~ 199 (405)
.+++.-+ +-.+.-|..|+.++... ++.|......+ .-..++.+++. ....++.+++.+++-+.-... +.+.+-+
T Consensus 156 kl~Q~i~-~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K 232 (432)
T COG5231 156 KLSQLID-FLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDK 232 (432)
T ss_pred HHHHHHH-HHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHH
Confidence 3444444 56789999999999988 77777665443 44667777776 467899999999998875544 4433222
Q ss_pred -cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhh---hccHHHHHhhhc--CCChHHHHHHHHHHHHhccC
Q 015537 200 -QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV---SPALPALAHLIH--SNDDEVLTDACWALSYLSDG 273 (405)
Q Consensus 200 -~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~---~~~l~~L~~ll~--~~d~~v~~~a~~~l~~l~~~ 273 (405)
...+.-++.+......+.+.+-++..+.|++...|...+... ..+.+..-.++. .+|++++.+.-..=+.|...
T Consensus 233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~ 312 (432)
T COG5231 233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN 312 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence 234556666665556789999999999999995544333222 234444444443 24666655543332222111
Q ss_pred ---------------------Ch---------hHHHHHHhc--CChHHHHHhcCCCCcc-hHHHHHHHHhHhhcCChhhH
Q 015537 274 ---------------------TN---------DKIQAVIEA--GVFPRLAEFLMHPSPS-VLIPALRTVGNIVTGDDMQT 320 (405)
Q Consensus 274 ---------------------~~---------~~~~~~~~~--~~l~~L~~lL~~~~~~-v~~~a~~~l~nl~~~~~~~~ 320 (405)
++ .+.+.+.+. .++..|..+|+++.+. ...-||.-|+.++...++..
T Consensus 313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~ 392 (432)
T COG5231 313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEIN 392 (432)
T ss_pred hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHH
Confidence 10 223333333 5678888999887765 66679999999999999999
Q ss_pred HHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (405)
Q Consensus 321 ~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (405)
..+...|+=..++.+++++ +++||-+|..++--+.
T Consensus 393 ~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i 427 (432)
T COG5231 393 AVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence 9999999999999999999 9999999998887664
No 83
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=1e-05 Score=75.12 Aligned_cols=202 Identities=14% Similarity=0.123 Sum_probs=149.3
Q ss_pred HHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC-CCChhhhhccHHHHHhhhcCCC
Q 015537 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIHSND 256 (405)
Q Consensus 178 ~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~d 256 (405)
.++-+|-.++..-...|.-+....+.++|+++| .+++..+..-++..+.|+.-... -.......+++..|+.++.+.|
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 344445555555566777777888899999999 77787788888888888877653 3333444889999999999999
Q ss_pred hHHHHHHHHHHHHhccCChhHHH-HHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChh---hHHHHHhcC----c
Q 015537 257 DEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM---QTQCVIEYQ----A 328 (405)
Q Consensus 257 ~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~---~~~~~~~~g----~ 328 (405)
...+....|.+..+..++.+..+ ..+..-++..++.+..+++..++..++.++.|+.+.+.. ..+..+... +
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 99999999999999877654422 356667789999999999999999999999999974332 233233222 4
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HhCcHHHHHHHHhc
Q 015537 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIM-HVHAFSIIVAFFFM 381 (405)
Q Consensus 329 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~lL~~ 381 (405)
.+.|.+-+... +|-.-.+.|+.|.++++.+.+..+.++ ...++..+..+|..
T Consensus 567 fk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e 619 (743)
T COG5369 567 FKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDE 619 (743)
T ss_pred HHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHH
Confidence 56667777777 777777789999999997777555555 46666666666643
No 84
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.38 E-value=7.1e-07 Score=65.00 Aligned_cols=87 Identities=22% Similarity=0.332 Sum_probs=71.2
Q ss_pred hHHHHHhc-CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 015537 287 FPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQV 365 (405)
Q Consensus 287 l~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (405)
++.|++.| .++++.++..++++||.+- ++ ..++.|..++.++ ++.+|..|+|+|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDE-DPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSS-SHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCC-CHHHHHHHHHHHHHhC---------
Confidence 57888988 8889999999999999552 11 3588999999888 9999999999999882
Q ss_pred HHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537 366 IMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCL 400 (405)
Q Consensus 366 l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~ 400 (405)
+...++.|.+++.++.+. .||..|.++||
T Consensus 60 --~~~~~~~L~~~l~~~~~~----~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDE----VVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSH----HHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcH----HHHHHHHhhcC
Confidence 234788899999876544 68999999986
No 85
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.38 E-value=6.5e-06 Score=62.48 Aligned_cols=126 Identities=18% Similarity=0.171 Sum_probs=107.5
Q ss_pred hhcCHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc
Q 015537 71 KLENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS 149 (405)
Q Consensus 71 ~~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~ 149 (405)
+++-++.|+...+. .+.+.+.+.+.-|.+++-. .-+...+.+.+++..|++.|..++ +.+...++..|+|+|-+ +
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~d-~ 89 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCLD-K 89 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhccC-h
Confidence 44567888887775 6788899888889998642 344566788999999999999999 89999999999999998 8
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 015537 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200 (405)
Q Consensus 150 ~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~ 200 (405)
.+...+.+.+++|.++..++++.......++.++..++-.....++.+...
T Consensus 90 ~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p 140 (173)
T KOG4646|consen 90 TNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSP 140 (173)
T ss_pred HHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccH
Confidence 889999999999999999999999999999999999997776677777554
No 86
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00014 Score=70.95 Aligned_cols=268 Identities=16% Similarity=0.155 Sum_probs=156.0
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC
Q 015537 79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH 158 (405)
Q Consensus 79 ~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~ 158 (405)
.+-|++++.-++-.|+.++.++.+.+ .+. .+.|-+-++|++++ +-++..|+.|...+....|+...
T Consensus 113 knDL~s~nq~vVglAL~alg~i~s~E---mar-----dlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e----- 178 (866)
T KOG1062|consen 113 KNDLNSSNQYVVGLALCALGNICSPE---MAR-----DLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVE----- 178 (866)
T ss_pred HhhccCCCeeehHHHHHHhhccCCHH---HhH-----HhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHH-----
Confidence 33445566666666666676665422 222 23566667777766 77777777777777776665443
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh--------------CCCchhHHHHHHH
Q 015537 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------------GQPKLSMLRNATW 224 (405)
Q Consensus 159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~--------------~~~~~~~~~~a~~ 224 (405)
.+++....+|.+.+..|.-.++..+..+|..++..-..+.+ .++.++..|. .-++|-++..++.
T Consensus 179 ~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLr 256 (866)
T KOG1062|consen 179 HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILR 256 (866)
T ss_pred HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHH
Confidence 33555666776666677767777777777665433222221 3333333331 1124556666666
Q ss_pred HHHHhhcCCCCCChhhhhccHHHHHhhhcCC---ChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcch
Q 015537 225 TLSNFCRGKPQPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301 (405)
Q Consensus 225 ~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v 301 (405)
.|.-|-++++. ....+..++..+..-..++ -..|.-+++.++..+-..+.-.. -++..|-++|.+.+..+
T Consensus 257 lLriLGq~d~d-aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrv------lainiLgkFL~n~d~Ni 329 (866)
T KOG1062|consen 257 LLRILGQNDAD-ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRV------LAINILGKFLLNRDNNI 329 (866)
T ss_pred HHHHhcCCCcc-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHH------HHHHHHHHHhcCCccce
Confidence 66666666322 2222233333332222211 14466666666665543332221 13466777777778888
Q ss_pred HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 015537 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFM 381 (405)
Q Consensus 302 ~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~ 381 (405)
+.-|+..|...+..++...+.- =..++.+|+++ |..+|+.|.-.+-.|+.. .++..+ +..|++.|..
T Consensus 330 rYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~m-----v~eLl~fL~~ 396 (866)
T KOG1062|consen 330 RYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDP-DVSIKRRALELSYALVNE--SNVRVM-----VKELLEFLES 396 (866)
T ss_pred eeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHHH-----HHHHHHHHHh
Confidence 8888888888887766544422 34578899999 999999999888888643 334444 3456666665
Q ss_pred c
Q 015537 382 F 382 (405)
Q Consensus 382 ~ 382 (405)
.
T Consensus 397 ~ 397 (866)
T KOG1062|consen 397 S 397 (866)
T ss_pred c
Confidence 5
No 87
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.37 E-value=4.7e-06 Score=63.21 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=100.2
Q ss_pred cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 015537 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (405)
Q Consensus 115 ~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 194 (405)
.+.+..|+.-.....+.+.+++...-|.|.+.+ |.+-..+.+..+++.++..|..++..+++.++..|+|+|-+.. ..
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~ 92 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NA 92 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HH
Confidence 345666666555544489999999999999988 7777888899999999999999999999999999999998776 66
Q ss_pred HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
..+.+.++++.++..+ .++...+...++.++..|+.+.
T Consensus 93 ~~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence 8888999999999999 8888889999999999999875
No 88
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.37 E-value=6.7e-05 Score=74.31 Aligned_cols=289 Identities=13% Similarity=0.107 Sum_probs=176.0
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 015537 77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI 156 (405)
Q Consensus 77 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~ 156 (405)
.+++.+.+.|.+.++-|+.-|.+=+... .-..+.=-+..++..++++|.+.+ +++|..|..|++-+++.-++.+-.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le-- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE-- 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence 7888899999999999998887766543 222222224467899999999988 999999999999998754433211
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh----hCCC-chhHHHHHHHHHHHhhc
Q 015537 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL----NGQP-KLSMLRNATWTLSNFCR 231 (405)
Q Consensus 157 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l----~~~~-~~~~~~~a~~~l~~l~~ 231 (405)
.++..|+.-+-++....+..+.-.|......-++.....+...+++.++..+ .... ...++-.++-.+.-+-.
T Consensus 85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 2344555544444444444444333333323222222223333444444444 3323 33466666666665554
Q ss_pred CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCCh-hHHHHHHhcCChHHHHHhcCCC-CcchHHHHHHHH
Q 015537 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTV 309 (405)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~l 309 (405)
....--..+...++..+..-+.+.-.-|+..++.+|+.++...+ +... +++..|..-|..+ ++.....-+.+|
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~-----~li~~Ll~~L~~~~q~~~~rt~Iq~l 237 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYV-----ELIEHLLKGLSNRTQMSATRTYIQCL 237 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHhccCCCCchHHHHHHHHHH
Confidence 43222222445677777777888888999999999999986543 3222 3445666666443 445555567778
Q ss_pred hHhhcCChhhHHHHHhcCchHHHHHhh---cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 015537 310 GNIVTGDDMQTQCVIEYQALPCLLNLL---SGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFF 379 (405)
Q Consensus 310 ~nl~~~~~~~~~~~~~~g~l~~L~~ll---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL 379 (405)
+.++.........-. ..++|.+.+.. +.. +.++|+...-++.-+....|..+-..+ ..++..+++.+
T Consensus 238 ~~i~r~ag~r~~~h~-~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~-pei~~l~l~yi 307 (1233)
T KOG1824|consen 238 AAICRQAGHRFGSHL-DKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHV-PEIINLCLSYI 307 (1233)
T ss_pred HHHHHHhcchhhccc-chhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccc-hHHHHHHHHHh
Confidence 888754332222111 24677888887 555 788999999999888876666554332 23444444444
No 89
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=3.7e-05 Score=71.95 Aligned_cols=315 Identities=13% Similarity=0.109 Sum_probs=195.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
.+++++.++...|..++..|+..+.+++..-+.+... .-..+...+.++...++ ..++. ++..+-.+..+-...++
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~--~Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV--YFNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTESA 160 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc--chHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhccccc
Confidence 4788899999999999999999888876433222211 12334566666666655 44443 33333333222111111
Q ss_pred -HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh-cCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 154 -VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 154 -~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~-~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
.+-=.+.||.|-.-+...++..+...+.-|..+-.- | ..+++-. ...++-|.++| .+++.+++..+-.+++++-.
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P-~~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-P-DLEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-C-cHHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHH
Confidence 222224556555556667888888777767666322 2 2344321 23566777777 78888999888888887766
Q ss_pred CC-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcc-hHHHHHHHH
Q 015537 232 GK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS-VLIPALRTV 309 (405)
Q Consensus 232 ~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-v~~~a~~~l 309 (405)
.- ..+........++.++..++++++.++.-|+.-+..+..-.... -...-+|++..+++++.++++. +...+...-
T Consensus 238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVN 316 (675)
T ss_pred HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence 54 33333355788899999999999999988876666665443332 1244568888888888877663 444333322
Q ss_pred hHhhc--CChhhHHHHHhcC-chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccc
Q 015537 310 GNIVT--GDDMQTQCVIEYQ-ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFF 386 (405)
Q Consensus 310 ~nl~~--~~~~~~~~~~~~g-~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~ 386 (405)
+-+.. +.+...+. ++.| +++.+.+.+.++ ....|-++.--+..+-...|.++ ......+++.|..-|+..+++
T Consensus 317 ~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd~- 392 (675)
T KOG0212|consen 317 GLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSDE- 392 (675)
T ss_pred HHHHHHHhhhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchhH-
Confidence 22221 12211111 5555 889999999998 88888888755555555555532 333578888888888766544
Q ss_pred hhhhHHHHHHHHHhhhcc
Q 015537 387 FGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 387 ~~~~vr~~A~~al~n~~~ 404 (405)
|-..+...+++.|.
T Consensus 393 ----vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 393 ----VVLLALSLLASICS 406 (675)
T ss_pred ----HHHHHHHHHHHHhc
Confidence 77788888888774
No 90
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00018 Score=62.74 Aligned_cols=267 Identities=16% Similarity=0.130 Sum_probs=161.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 015537 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197 (405)
Q Consensus 118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i 197 (405)
+..++.++.+.+ |.++..|...+.+++.. .-..-.-.+...++.+.+++....+ .+.|+.+|.|++.+.. .++.+
T Consensus 5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~l 79 (353)
T KOG2973|consen 5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKL 79 (353)
T ss_pred HHHHHHHhccCC-hHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHH
Confidence 456788999888 99999999999988876 2111111122467888999987766 7889999999997765 66776
Q ss_pred HhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChh-------hhhccHHHHHhhhcCCCh--HHHHHHHHHHH
Q 015537 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD-------QVSPALPALAHLIHSNDD--EVLTDACWALS 268 (405)
Q Consensus 198 ~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-------~~~~~l~~L~~ll~~~d~--~v~~~a~~~l~ 268 (405)
+.. .+..++..+ .++........|..++|+++........ ...++......+..++-. .-.......++
T Consensus 80 l~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 80 LQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 665 666677777 6666678888999999999875221111 112333344444443321 23345555666
Q ss_pred HhccCChhHHHHHHhcCCh--HHHHHhcCCCCcch-HHHHHHHHhHhhcCChhhHHHHHhc--CchHHHH----------
Q 015537 269 YLSDGTNDKIQAVIEAGVF--PRLAEFLMHPSPSV-LIPALRTVGNIVTGDDMQTQCVIEY--QALPCLL---------- 333 (405)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~l--~~L~~lL~~~~~~v-~~~a~~~l~nl~~~~~~~~~~~~~~--g~l~~L~---------- 333 (405)
+++.....+ ..+.+...+ ..+..+-+ .+..+ +...+.+|-|+|.....+.. +++. .++|.|+
T Consensus 158 nls~~~~gR-~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~s 234 (353)
T KOG2973|consen 158 NLSQFEAGR-KLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEELS 234 (353)
T ss_pred HHhhhhhhh-hHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccccC
Confidence 666544332 233333322 22333333 33333 44577788888765544433 3321 2333332
Q ss_pred -----------HhhcC----CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHH
Q 015537 334 -----------NLLSG----NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWL 398 (405)
Q Consensus 334 -----------~ll~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~a 398 (405)
+++.. .+++.||+.-.-+|.-+|+..+. ++.+.+.|+.|.+-.+-+...+ +++++ ||.-
T Consensus 235 EEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G-Re~lR~kgvYpilRElhk~e~d----ed~~~-ace~ 308 (353)
T KOG2973|consen 235 EEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG-REVLRSKGVYPILRELHKWEED----EDIRE-ACEQ 308 (353)
T ss_pred HHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh-HHHHHhcCchHHHHHHhcCCCc----HHHHH-HHHH
Confidence 22221 12788999999999999875444 6778888888877766554433 36665 4444
Q ss_pred Hh
Q 015537 399 CL 400 (405)
Q Consensus 399 l~ 400 (405)
++
T Consensus 309 vv 310 (353)
T KOG2973|consen 309 VV 310 (353)
T ss_pred HH
Confidence 33
No 91
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=0.00051 Score=65.53 Aligned_cols=307 Identities=15% Similarity=0.160 Sum_probs=192.8
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
.+..+++.+....+.+|.....++.-+.......... .+.+.+.++++... ..-+..+++.+..+..+. ...
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~-----~~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i~ 168 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGE-----YVLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GIE 168 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHH-----HHHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HHh
Confidence 3577778888888999999998888775433222222 24677888888766 677889999999888763 334
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHH-HHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQ-AVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~-a~~~L~nl~~~-~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
.+.+.+++..|...+.+........ +..+.-..+.. ++...-.+. ..++.++..+ .+....++..+..+.-.+-+
T Consensus 169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv--~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV--PILPSILTNF-GDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH--hhHHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence 5566688899999888855444332 22222222211 121111111 1344445544 56677888887777776665
Q ss_pred CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (405)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n 311 (405)
.-+. ..+.-++|.++.-+..........++..++.+++..+.+.. ..-..++|.+.+.|.+..++++..+..++-.
T Consensus 246 ~~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 246 CLSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred hcCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 5321 12234555555544444677788899999999888877665 5556899999999999999999999988887
Q ss_pred hhcCCh-hhHHHHH------------------------------hcCchHHHHHhhcCC---CchhHHHHHHHHHHHHhc
Q 015537 312 IVTGDD-MQTQCVI------------------------------EYQALPCLLNLLSGN---YKKSIKKEACWTVSNITA 357 (405)
Q Consensus 312 l~~~~~-~~~~~~~------------------------------~~g~l~~L~~ll~~~---~~~~v~~~a~~~L~nl~~ 357 (405)
++.--+ ..++.++ +.-.+..++.++..+ .+..+++.++-+++|++.
T Consensus 322 ~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 322 FGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred HHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 774221 1122111 112233344444322 156788999999999997
Q ss_pred C--CHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537 358 G--NREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLV 401 (405)
Q Consensus 358 ~--~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n 401 (405)
- ++..+...+ -.++|.|-..+... -|++|..|..||+-
T Consensus 402 LveDp~~lapfl-~~Llp~lk~~~~d~-----~PEvR~vaarAL~~ 441 (569)
T KOG1242|consen 402 LVEDPKDLAPFL-PSLLPGLKENLDDA-----VPEVRAVAARALGA 441 (569)
T ss_pred hhcCHHHHhhhH-HHHhhHHHHHhcCC-----ChhHHHHHHHHHHH
Confidence 3 454443332 23444444444333 36899999999964
No 92
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.29 E-value=7.5e-05 Score=69.20 Aligned_cols=188 Identities=26% Similarity=0.348 Sum_probs=145.5
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 015537 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (405)
Q Consensus 116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (405)
..++.+.+++.+.+ ..++..|++.++.+... -+++.+..++.+.++.++..++.+|+++- .+
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~---- 104 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--DP---- 104 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch----
Confidence 35888999999886 89999999998776543 47899999999999999999999998873 22
Q ss_pred HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCCh------------HHHHHH
Q 015537 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD------------EVLTDA 263 (405)
Q Consensus 196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~------------~v~~~a 263 (405)
..+++++..+..+.+..++..+.++|..+-.. ..+..++..+.+.+. .++..+
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 25788999996678999999999999988765 335566666665442 344445
Q ss_pred HHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchh
Q 015537 264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS 343 (405)
Q Consensus 264 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~ 343 (405)
..+++.+-+ ...++.+...+.+.+..++..+..+++.+.... ..+.+.+...+.+. +..
T Consensus 170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 555544421 234678889999888899999999999988655 24567788888888 899
Q ss_pred HHHHHHHHHHHHhc
Q 015537 344 IKKEACWTVSNITA 357 (405)
Q Consensus 344 v~~~a~~~L~nl~~ 357 (405)
+|..++.+|+.+-.
T Consensus 229 vr~~~~~~l~~~~~ 242 (335)
T COG1413 229 VRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHhcccCc
Confidence 99999988888843
No 93
>PF05536 Neurochondrin: Neurochondrin
Probab=98.29 E-value=5.1e-05 Score=74.05 Aligned_cols=238 Identities=18% Similarity=0.128 Sum_probs=162.4
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCc--hHHHHhcCcHHHHHHHhcCCC------CHHHHHHHHHHHHHH
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNI 144 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~l~~Li~lL~~~~------~~~~~~~a~~~L~ni 144 (405)
..+...+.+|++.+.+.++-++-.+.+++..++... .+.+.+.-+.+.+-++|.++. ....+.-|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 357888999999888888999999999987652112 234667766888888998732 256788888899988
Q ss_pred hcCCchhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHH
Q 015537 145 ASGTSEHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT 223 (405)
Q Consensus 145 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~-~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~ 223 (405)
+.. ++....---.+-||.|+..+.+.+. .+...++.+|..++ ..+..+..+.+.|+++.|...+.+ .+.....++
T Consensus 85 ~~~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al 160 (543)
T PF05536_consen 85 CRD-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIAL 160 (543)
T ss_pred cCC-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHH
Confidence 885 4443211112679999999988766 99999999999999 455578889999999999999954 555677777
Q ss_pred HHHHHhhcCCCC----CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhH-HHHHHhcCC----hHHHHHhc
Q 015537 224 WTLSNFCRGKPQ----PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-IQAVIEAGV----FPRLAEFL 294 (405)
Q Consensus 224 ~~l~~l~~~~~~----~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~----l~~L~~lL 294 (405)
.++.+++..... .....+..+++.+...+...........|..|+.+....+.. ......... ...+..+|
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 778777765432 122223456666777776666667778888888887655311 111122222 33344555
Q ss_pred CCC-CcchHHHHHHHHhHhhc
Q 015537 295 MHP-SPSVLIPALRTVGNIVT 314 (405)
Q Consensus 295 ~~~-~~~v~~~a~~~l~nl~~ 314 (405)
++. .+.-|.+++...+.+..
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHH
Confidence 443 45566667666666653
No 94
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.28 E-value=1.1e-05 Score=70.32 Aligned_cols=189 Identities=17% Similarity=0.114 Sum_probs=120.4
Q ss_pred cCCChHHHHHHHHHHHHhhccC-CCCchHHHHh--cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCC
Q 015537 83 WSNDSGVQYECTTQFRKLLSIE-RSPPIEEVIR--SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159 (405)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~s~~-~~~~~~~~~~--~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g 159 (405)
.+.|++.+.+|+..|+.++.+. .......++. ..++..++..+.+.. ..+...|+.++..++..........++ .
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~-~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYAD-I 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence 4578999999999999998765 1122223322 145567777777666 689999999999998864444444433 5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC--CCC
Q 015537 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP--QPP 237 (405)
Q Consensus 160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~--~~~ 237 (405)
++|.|+..+.++...+++.|..+|..++...+.....+ +..+...+ .+.++.++..++..+..+....+ ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 78999999999999999999999999997655111111 23334444 88999999999999998887765 111
Q ss_pred h---hhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHH
Q 015537 238 F---DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279 (405)
Q Consensus 238 ~---~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~ 279 (405)
. ..+..+++.+..++.+.+++|+..+-.++..+....++...
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 1 12356888899999999999999999998888665555444
No 95
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.27 E-value=4.9e-05 Score=77.04 Aligned_cols=267 Identities=15% Similarity=0.144 Sum_probs=176.8
Q ss_pred HHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC---ch
Q 015537 75 LPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT---SE 150 (405)
Q Consensus 75 l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~---~~ 150 (405)
++.+...+++ ...+.+..|+..|..+...- .++..-.-++|.++.++.++. .++|..|+.+|+.+...- +.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i----~de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYI----DDEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhc----chHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence 4555555554 45678888998888885322 122233457999999999998 899999999988865531 11
Q ss_pred hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCC------------------Chhh-----------HHHHHhc
Q 015537 151 HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGD------------------SPRC-----------RDLVLSQ 200 (405)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~------------------~~~~-----------~~~i~~~ 200 (405)
.-..+.-.=++|.|-.++.+ ....++-.-+.+|+.||.. .+.. ...+ ..
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L-~~ 577 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQAL-HH 577 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHH-HH
Confidence 11223333567888888887 3444554445555555421 1100 0000 01
Q ss_pred CChHH-HHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHH
Q 015537 201 GGLVP-LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279 (405)
Q Consensus 201 ~~i~~-L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~ 279 (405)
.+.. ...++ .++++-|++..+..|.-||.-.... ....-+++.|..+|+..|+..+..-...|..++-.-.-
T Consensus 578 -~V~~~v~sLl-sd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--- 650 (1431)
T KOG1240|consen 578 -TVEQMVSSLL-SDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--- 650 (1431)
T ss_pred -HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---
Confidence 1222 33334 6667788888888888888754211 12235788999999999999998888888766532111
Q ss_pred HHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 280 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
.-++..++|.|.+-|.+..+-|...|+.++.-++...--....++ .+++....+|-++ +.-||..+|..|..++.
T Consensus 651 rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 651 RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 113456789999999999999999999999999865543333343 3577788889999 99999999998888764
No 96
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.25 E-value=1.6e-06 Score=56.77 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537 342 KSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
+.+|..|+|+|++++...++..+. ....++|.|+.+|.+++ +.||..|+|+|+|.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~-----~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDD-----DSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSS-----HHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCC-----HHHHHHHHHHHhcC
Confidence 478999999999998888887666 45789999999996542 36999999999984
No 97
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.24 E-value=3.6e-06 Score=61.25 Aligned_cols=87 Identities=29% Similarity=0.421 Sum_probs=70.0
Q ss_pred HHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 015537 118 VPRFVEFL-LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (405)
Q Consensus 118 l~~Li~lL-~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (405)
+|.|++.| ++++ +.++..|+++|+.+.. + .+++.|+.+++++++.++..++++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57899999 5555 9999999999995522 1 35899999999999999999999999883
Q ss_pred HHhcCChHHHHHhhhCCCchhHHHHHHHHHH
Q 015537 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (405)
Q Consensus 197 i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~ 227 (405)
....++.|..++.++.+..++..++++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12378889999966667778888888874
No 98
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=9.8e-05 Score=69.22 Aligned_cols=268 Identities=15% Similarity=0.095 Sum_probs=170.9
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC---CChhh
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG---DSPRC 193 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~---~~~~~ 193 (405)
++|.|-+-+...+ +..|...+.-|.-+-.. |...-.-.-..+++-|...|.+++++|+..+-.+++++.. .+|..
T Consensus 168 ~ipLL~eriy~~n-~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 168 FIPLLRERIYVIN-PMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHHHhcCC-chHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 3444444444445 67777666656555443 3222111112567788889999999999888888887652 22221
Q ss_pred HHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChH-HHHHHHHH---HHH
Q 015537 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE-VLTDACWA---LSY 269 (405)
Q Consensus 194 ~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~-v~~~a~~~---l~~ 269 (405)
- --...++.++..+ .++++.++..|+.-+..+..-.+..-.....+++..+++++.++++. +...+... +..
T Consensus 246 ~---d~~~~i~vlv~~l-~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~ 321 (675)
T KOG0212|consen 246 M---DYDDMINVLVPHL-QSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK 321 (675)
T ss_pred c---Ccccchhhccccc-cCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence 1 1123566777777 78888888877776777776656666667788888888888777664 33333222 222
Q ss_pred hccCChhHHHHHHhc-CChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHH
Q 015537 270 LSDGTNDKIQAVIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA 348 (405)
Q Consensus 270 l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a 348 (405)
+......... ++. .+++.+...+.++..+.+..++.-+..+-...+.+.- .....+.+.|+.-|++. +..+...+
T Consensus 322 l~s~~~~~~~--id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~-~h~~~if~tLL~tLsd~-sd~vvl~~ 397 (675)
T KOG0212|consen 322 LVSSERLKEE--IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL-VHNDSIFLTLLKTLSDR-SDEVVLLA 397 (675)
T ss_pred HHhhhhhccc--cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh-hhccHHHHHHHHhhcCc-hhHHHHHH
Confidence 3221111111 222 4577888888999899999999888888765554433 33446889999999998 88899999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 349 CWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 349 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
...+.++|...... |.++.+.++|.....+. -.++..+.+.+..+|
T Consensus 398 L~lla~i~~s~~~~-------~~~~fl~sLL~~f~e~~--~~l~~Rg~lIIRqlC 443 (675)
T KOG0212|consen 398 LSLLASICSSSNSP-------NLRKFLLSLLEMFKEDT--KLLEVRGNLIIRQLC 443 (675)
T ss_pred HHHHHHHhcCcccc-------cHHHHHHHHHHHHhhhh--HHHHhhhhHHHHHHH
Confidence 99999998743321 44666666666554431 234556666666666
No 99
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.23 E-value=8.9e-05 Score=73.45 Aligned_cols=214 Identities=15% Similarity=0.142 Sum_probs=143.4
Q ss_pred CHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHh
Q 015537 130 YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209 (405)
Q Consensus 130 ~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~ 209 (405)
+..++.-|+-.||.+..+-+.. -..+.-..++..+.+++.+++..|..+||+++.++-+ ..++.++..
T Consensus 832 ~~~ikvfa~LslGElgr~~~~s----~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~--------~yLpfil~q 899 (1233)
T KOG1824|consen 832 SDSIKVFALLSLGELGRRKDLS----PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP--------KYLPFILEQ 899 (1233)
T ss_pred chhHHHHHHhhhhhhccCCCCC----cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH--------hHHHHHHHH
Confidence 3678888888888886653221 1234556788899999999999999999999875432 145666666
Q ss_pred hhCCCchhHHHHHHHHHHHhhcC-CCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChH
Q 015537 210 LNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288 (405)
Q Consensus 210 l~~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 288 (405)
+...+ .=+.-.+..|-.+... ........+..+...|.+......+..+.-.+.||+.|+..+++. .+|
T Consensus 900 i~sqp--k~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes--------Llp 969 (1233)
T KOG1824|consen 900 IESQP--KRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES--------LLP 969 (1233)
T ss_pred Hhcch--HhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------HHH
Confidence 63322 1122222222222221 122112222344444444445556777888999999999877764 468
Q ss_pred HHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015537 289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIM 367 (405)
Q Consensus 289 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (405)
.|-..+.++.+..+..++.++--.....+.-.+.++ ...+..++.++.++ +..||+.|.-++...+.+.|..+..+.
T Consensus 970 kL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~l-k~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaahNKpslIrDll 1046 (1233)
T KOG1824|consen 970 KLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLL-KQQIGDFLKLLRDP-DLEVRRVALVVLNSAAHNKPSLIRDLL 1046 (1233)
T ss_pred HHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHH-HHHHHHHHHHHhCC-chhHHHHHHHHHHHHHccCHhHHHHHH
Confidence 999999999999898888877665554444444333 35677889999999 999999999999999888888776554
No 100
>PF05536 Neurochondrin: Neurochondrin
Probab=98.18 E-value=0.00024 Score=69.39 Aligned_cols=236 Identities=19% Similarity=0.142 Sum_probs=163.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh---HHHHHhcCChHHHHHhhhCC------CchhHHHHHHHHHHHhh
Q 015537 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC---RDLVLSQGGLVPLLAQLNGQ------PKLSMLRNATWTLSNFC 230 (405)
Q Consensus 160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~---~~~i~~~~~i~~L~~~l~~~------~~~~~~~~a~~~l~~l~ 230 (405)
.+...+.+|+..+..=+-.++..+.+++..++.. +..+.+.=+...+-++|... +....+.-++..|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3566777888877667777888888888665532 23455554566666666331 34567788888899999
Q ss_pred cCCCCCChhhhhccHHHHHhhhcCCCh-HHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHH
Q 015537 231 RGKPQPPFDQVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (405)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~d~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l 309 (405)
..+.-.....+.+-+|.|+..+.+.+. .+..+++.+|..++ ..++..+.+++.|.++.|.+.+.+ .+.....|+.++
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 865444455667899999999977766 99999999999999 566667889999999999999977 666788899999
Q ss_pred hHhhcCChhhHHH---HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH-----HHHHHHhCcHHHHHHHHhc
Q 015537 310 GNIVTGDDMQTQC---VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ-----IQVIMHVHAFSIIVAFFFM 381 (405)
Q Consensus 310 ~nl~~~~~~~~~~---~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~-----~~~l~~~~~i~~L~~lL~~ 381 (405)
.+++.......-. -.-..+++.+...+... ....+-++|-.|+++....+.. ...-+-..+...|..+|.+
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 9988654411100 00113566677777666 6677888999999998754211 1122345566677777776
Q ss_pred ccccchhhhHHHHHHHHHhhh
Q 015537 382 FLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 382 ~~~~~~~~~vr~~A~~al~n~ 402 (405)
.-.+ .-|..|..+.+.+
T Consensus 243 r~~~----~~R~~al~Laa~L 259 (543)
T PF05536_consen 243 RLTP----SQRDPALNLAASL 259 (543)
T ss_pred CCCH----HHHHHHHHHHHHH
Confidence 6444 6677776665543
No 101
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.15 E-value=3.7e-06 Score=55.07 Aligned_cols=55 Identities=27% Similarity=0.444 Sum_probs=47.0
Q ss_pred cchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 015537 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (405)
Q Consensus 299 ~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl 355 (405)
+.++..|+++||+++...+..... ....+++.|..+|.++ ++.||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 468999999999998877766665 4447999999999998 889999999999986
No 102
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00011 Score=70.28 Aligned_cols=215 Identities=13% Similarity=0.091 Sum_probs=144.9
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC------CCC
Q 015537 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP------QPP 237 (405)
Q Consensus 164 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~------~~~ 237 (405)
|..+..+.+..++.+|+.+|..|..... .... .....++.+ .+.+..++..|+..++-...-.| ...
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 5666666777777777777777665222 2122 234556667 77788888877555544433321 122
Q ss_pred hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChH-----------------------------
Q 015537 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP----------------------------- 288 (405)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~----------------------------- 288 (405)
......++..+...+.+-...|+..|..+|+.+-.-+++.+...++..++.
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence 233456777777888877888899999998888776666655555544444
Q ss_pred ---------------------HHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHH
Q 015537 289 ---------------------RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE 347 (405)
Q Consensus 289 ---------------------~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~ 347 (405)
.++.-|.+.-.+|+.+|+..++.++...+.... ..++.|++++++. ...||..
T Consensus 356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE-~~~VRL~ 429 (823)
T KOG2259|consen 356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE-IEVVRLK 429 (823)
T ss_pred cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH-HHHHHHH
Confidence 222222222236899999999999998876655 4578899999999 8999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537 348 ACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
|.++|.-|+.+ ..+++..++.++..|... .++||.++.-.|+|+
T Consensus 430 ai~aL~~Is~~------l~i~eeql~~il~~L~D~-----s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 430 AIFALTMISVH------LAIREEQLRQILESLEDR-----SVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHH------heecHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhc
Confidence 99999999754 223556677777778655 347998888777764
No 103
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00055 Score=66.84 Aligned_cols=139 Identities=19% Similarity=0.184 Sum_probs=88.8
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 015537 123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202 (405)
Q Consensus 123 ~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~ 202 (405)
+...+.. +-+|..|+.+|..+-+-++++...+ +..+-.+|.+.++-|.-.|+.++-.+|-+.- +.+ ++-
T Consensus 150 ~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--Hkn 218 (968)
T KOG1060|consen 150 KAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKN 218 (968)
T ss_pred HHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHH
Confidence 3444455 8889999999999888777776644 3455667888889999999999888874432 222 234
Q ss_pred hHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-CCCCh----------------------------hhhhccHHHHHhhhc
Q 015537 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF----------------------------DQVSPALPALAHLIH 253 (405)
Q Consensus 203 i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~----------------------------~~~~~~l~~L~~ll~ 253 (405)
...+.++| .+-+.-=+..++.+|...|+.. +.+.. ....-++...-.+|.
T Consensus 219 yrklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~ 297 (968)
T KOG1060|consen 219 YRKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ 297 (968)
T ss_pred HHHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence 56666666 4444444555556666556654 22200 011223444555777
Q ss_pred CCChHHHHHHHHHHHHhccC
Q 015537 254 SNDDEVLTDACWALSYLSDG 273 (405)
Q Consensus 254 ~~d~~v~~~a~~~l~~l~~~ 273 (405)
+.++.|...++.++.+++-.
T Consensus 298 S~n~sVVmA~aql~y~lAP~ 317 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHLAPK 317 (968)
T ss_pred cCCcHHHHHHHhHHHhhCCH
Confidence 88888888888888888743
No 104
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.0014 Score=66.14 Aligned_cols=262 Identities=16% Similarity=0.213 Sum_probs=172.1
Q ss_pred hhcCHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc
Q 015537 71 KLENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS 149 (405)
Q Consensus 71 ~~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~ 149 (405)
-++.++-+...+.+ .++.+|..|+.++..+.+. .+.+..+...|++..|+.+|.+. |..+..++.+|..+++. +
T Consensus 1769 lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S~-~ 1843 (2235)
T KOG1789|consen 1769 LIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSSN-G 1843 (2235)
T ss_pred hhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhcC-c
Confidence 34556777777775 6789999999999877653 68889999999999999999765 68899999999999988 6
Q ss_pred hhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC---hhhHHHHH-----------h---------------
Q 015537 150 EHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDS---PRCRDLVL-----------S--------------- 199 (405)
Q Consensus 150 ~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~---~~~~~~i~-----------~--------------- 199 (405)
+......+.|++..+..++- +.++..+.+++..++.+..+. |..+-.++ .
T Consensus 1844 ~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~E 1923 (2235)
T KOG1789|consen 1844 QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSE 1923 (2235)
T ss_pred HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCC
Confidence 77777777888877776654 467788888888888765321 11110000 0
Q ss_pred --------------c----------------------------------------------------------------C
Q 015537 200 --------------Q----------------------------------------------------------------G 201 (405)
Q Consensus 200 --------------~----------------------------------------------------------------~ 201 (405)
. |
T Consensus 1924 nPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~ 2003 (2235)
T KOG1789|consen 1924 NPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTE 2003 (2235)
T ss_pred CcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHH
Confidence 0 0
Q ss_pred ChHHHHHhhh-CCCchhHHHHHHHHHHHhhcCCCCCChh-hhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHH
Q 015537 202 GLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFD-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279 (405)
Q Consensus 202 ~i~~L~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~ 279 (405)
.++.++.++. .++..........++..|.+..|.-... ---|.+|.++.-+...+..+-..+++.|..|+.+ .-...
T Consensus 2004 LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~ 2082 (2235)
T KOG1789|consen 2004 LLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCD 2082 (2235)
T ss_pred HHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHH
Confidence 0111111111 0111112333333444444444322211 1257778877777766666668888899888854 34566
Q ss_pred HHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCC-hhhHHHHHhcCchHHHHHhhcCC
Q 015537 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD-DMQTQCVIEYQALPCLLNLLSGN 339 (405)
Q Consensus 280 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~g~l~~L~~ll~~~ 339 (405)
.+.....+..++..+...- ...--|+.+|-.+...+ ++.....++.|++|+|+.+|+..
T Consensus 2083 AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 6777777777888775433 33446888888777533 45666678999999999999864
No 105
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.002 Score=62.25 Aligned_cols=292 Identities=12% Similarity=0.074 Sum_probs=174.1
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
..+.+.|.|.|+.-+..|+.++.++.+.+ ....+ -+-+-++|-+++ .+-++..|+.||..+-..+|+..
T Consensus 114 n~iknDL~srn~~fv~LAL~~I~niG~re---~~ea~-----~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~-- 183 (938)
T KOG1077|consen 114 NSIKNDLSSRNPTFVCLALHCIANIGSRE---MAEAF-----ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV-- 183 (938)
T ss_pred HHHHhhhhcCCcHHHHHHHHHHHhhccHh---HHHHh-----hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc--
Confidence 44444556677777778888888775432 12222 112225565544 35688999999999988766632
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh------------CCCchhHHHHH
Q 015537 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN------------GQPKLSMLRNA 222 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~------------~~~~~~~~~~a 222 (405)
-..+....++.+|.+.+-.+...+...+--|+...++.....+-. .+..|..... .-+.+-+...+
T Consensus 184 -~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl 261 (938)
T KOG1077|consen 184 -NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKL 261 (938)
T ss_pred -ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHHHHHH
Confidence 233678899999999888888888888888887665432221110 1222222210 12356677778
Q ss_pred HHHHHHhhcCCCCCChhhhhccHHHHHhhhcC----CC---hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC
Q 015537 223 TWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----ND---DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295 (405)
Q Consensus 223 ~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~----~d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 295 (405)
+..|.++=.-...........++..++...+. .+ .......+.-..+++.+-+..-+.+. ..+..|-++|+
T Consensus 262 ~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls 339 (938)
T KOG1077|consen 262 LRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLS 339 (938)
T ss_pred HHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhh
Confidence 88777772221222222333444444444431 11 11222233323333323222222232 34678999999
Q ss_pred CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHH
Q 015537 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSII 375 (405)
Q Consensus 296 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L 375 (405)
+.+..+|.-|+..+..+++.... .+.+-.+ .+.++..|....|..+|+.|.-.|-.+|.. ++.+.+ +..|
T Consensus 340 ~rE~NiRYLaLEsm~~L~ss~~s-~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~I-----V~el 409 (938)
T KOG1077|consen 340 HRETNIRYLALESMCKLASSEFS-IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQI-----VAEL 409 (938)
T ss_pred cccccchhhhHHHHHHHHhccch-HHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHHH-----HHHH
Confidence 99999999999999999987543 2333333 788999999665999999999999999853 333333 3456
Q ss_pred HHHHhcccccchhhhHHHHHH
Q 015537 376 VAFFFMFLHFFFGAIIYKLAI 396 (405)
Q Consensus 376 ~~lL~~~~~~~~~~~vr~~A~ 396 (405)
++.|.+. ++.+|++..
T Consensus 410 LqYL~tA-----d~sireeiv 425 (938)
T KOG1077|consen 410 LQYLETA-----DYSIREEIV 425 (938)
T ss_pred HHHHhhc-----chHHHHHHH
Confidence 6666553 345776543
No 106
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.06 E-value=2.5e-05 Score=68.06 Aligned_cols=190 Identities=15% Similarity=0.084 Sum_probs=121.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCC--hhhHHHHHh--cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhcc
Q 015537 169 YSPSDDVREQAVWALGNIAGDS--PRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244 (405)
Q Consensus 169 ~~~~~~i~~~a~~~L~nl~~~~--~~~~~~i~~--~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 244 (405)
.+.+.+.+..++.-|..++... ......+.. ...+..+...+ .+....+...++.++..++..-...-......+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 5578889999999999887555 112222221 13445566666 566788999999999999987544444456788
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh---hhHH
Q 015537 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD---MQTQ 321 (405)
Q Consensus 245 l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~---~~~~ 321 (405)
+|.|+..+.++...++..+..+|..++........ + .++.+...+.+.++.++..++..+..+....+ ....
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~-~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK-I----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H-H----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH-H----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 99999999988889999999999999876551111 1 14677778899999999999999999886444 2111
Q ss_pred H-HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 015537 322 C-VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQV 365 (405)
Q Consensus 322 ~-~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (405)
. ..-..+++.+...+.++ ++.+|+.|--++..+....++....
T Consensus 171 ~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a~~ 214 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERAES 214 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH--
T ss_pred ccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhhcc
Confidence 1 11135788999999999 9999999988888886655554433
No 107
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.03 E-value=2.8e-05 Score=73.52 Aligned_cols=152 Identities=19% Similarity=0.197 Sum_probs=107.1
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH--HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC-CC
Q 015537 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR--DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QP 236 (405)
Q Consensus 160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~--~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~ 236 (405)
++..++.+|+++.+.++.+++...+.|+.--..|. ..+...|. .|...| ...++++.-.++.++..+..... ..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence 56778889999999999999999998873211111 12222222 244444 66688888888888777765431 11
Q ss_pred ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 237 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~ 314 (405)
-..-+.+++|.|...|.+....|..+....++.++..+++.+..--=..+.--|++.|.+.+.+++..|..++|-|+.
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 112346899999999999999999999999999998877643211101234457888888899999999999999874
No 108
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00017 Score=68.83 Aligned_cols=273 Identities=17% Similarity=0.117 Sum_probs=167.7
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHH---HHHHHHh--cCCchhH
Q 015537 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAA---WALTNIA--SGTSEHT 152 (405)
Q Consensus 78 l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~---~~L~ni~--~~~~~~~ 152 (405)
+.......|+.++..|+..+-.+..+. .. ..-+....++.+++++ .+++..|+ |.++|.. ....+..
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL-----~~~~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF--KL-----SKACYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc--cc-----cHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 455555566666666666655552211 00 1113667788898887 89998884 5566665 1111222
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh----CCCchhHHHHHHHHHHH
Q 015537 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----GQPKLSMLRNATWTLSN 228 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~----~~~~~~~~~~a~~~l~~ 228 (405)
+.-....++..++..+.+-+..|+..|+.+||.+-.-+.++-...++. .++.-+. .++.+.-...- ..
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdK----Klms~lRRkr~ahkrpk~l~s~----Ge 346 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDK----KLMSRLRRKRTAHKRPKALYSS----GE 346 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHH----HHhhhhhhhhhcccchHHHHhc----CC
Confidence 211222567788889998899999999999998865444332222222 1222110 01111111000 01
Q ss_pred hhcCC------CCC------ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC
Q 015537 229 FCRGK------PQP------PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296 (405)
Q Consensus 229 l~~~~------~~~------~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 296 (405)
.++++ |.. ....-.|....++.-+.+.--+|+.+|+..++.|+...+.... ..+..|++++.+
T Consensus 347 wSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfND 421 (823)
T KOG2259|consen 347 WSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFND 421 (823)
T ss_pred cccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhcc
Confidence 11111 111 1112256667777777766689999999999999988877654 346899999999
Q ss_pred CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHH
Q 015537 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIV 376 (405)
Q Consensus 297 ~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~ 376 (405)
....++..|+.+|..|+.+ ..++..-++.+...|.+. +..+|.+.--.|++.-..+.+.+..++ ..|.
T Consensus 422 E~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~-s~dvRe~l~elL~~~~~~d~~~i~m~v-----~~lL 489 (823)
T KOG2259|consen 422 EIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDR-SVDVREALRELLKNARVSDLECIDMCV-----AHLL 489 (823)
T ss_pred HHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCcHHHHHHHH-----HHHH
Confidence 8899999999999998854 123445678888999888 899999988888877556666555443 3455
Q ss_pred HHHhccc
Q 015537 377 AFFFMFL 383 (405)
Q Consensus 377 ~lL~~~~ 383 (405)
+.|..+.
T Consensus 490 ~~L~kyP 496 (823)
T KOG2259|consen 490 KNLGKYP 496 (823)
T ss_pred HHhhhCC
Confidence 5555553
No 109
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00028 Score=68.29 Aligned_cols=127 Identities=21% Similarity=0.278 Sum_probs=87.9
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHH--HhccCChhHHHHHHhcCChHHHHHh-cCCCCcchHHHHHHHHhHhhcCChhh
Q 015537 243 PALPALAHLIHSNDDEVLTDACWALS--YLSDGTNDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQ 319 (405)
Q Consensus 243 ~~l~~L~~ll~~~d~~v~~~a~~~l~--~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~l~nl~~~~~~~ 319 (405)
..=+.+-+++.+.||-++.....+++ +...++. +++..|+.. .++.+.+|+..|+.+||-++..++++
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~ 589 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ 589 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch---------hhHHHhhcccccccchHHHHHHHHHheeeEecChhh
Confidence 44456777888888888877766543 3333332 344555555 46778899999999999999877743
Q ss_pred HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHH
Q 015537 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN--REQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIW 397 (405)
Q Consensus 320 ~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~ 397 (405)
++..+.+|..++++.||-.++.+|+-.|+|+ .+.+ +++.+| .++... .||+-|+.
T Consensus 590 ---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl----~~D~~~----fVRQgAlI 646 (929)
T KOG2062|consen 590 ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPL----TSDPVD----FVRQGALI 646 (929)
T ss_pred ---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhh----hcChHH----HHHHHHHH
Confidence 5667888887779999999999999999864 3322 122233 233222 59999988
Q ss_pred HHhh
Q 015537 398 LCLV 401 (405)
Q Consensus 398 al~n 401 (405)
+++-
T Consensus 647 a~am 650 (929)
T KOG2062|consen 647 ALAM 650 (929)
T ss_pred HHHH
Confidence 8763
No 110
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.0052 Score=56.43 Aligned_cols=243 Identities=13% Similarity=0.118 Sum_probs=169.6
Q ss_pred hhcCHHHHHHhhcCCChHHHHHHHHHHHHhhccC----CCC----chHHHHhcCcHHHHHHHhcCCC-----CHHHHHHH
Q 015537 71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIE----RSP----PIEEVIRSGVVPRFVEFLLRED-----YPQLQFEA 137 (405)
Q Consensus 71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~----~~~----~~~~~~~~g~l~~Li~lL~~~~-----~~~~~~~a 137 (405)
.+++++.++++|.++|.++-...+..+..+...+ ..+ -++.+++.++++.|++-+..-+ ...-...+
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 3577899999999999999999999998885432 112 2567788999999999886533 12235667
Q ss_pred HHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh----
Q 015537 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---- 211 (405)
Q Consensus 138 ~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~---- 211 (405)
+.++-|+..-.+.....+++.|.+..|+.-+.. +...-...|..+++-+..++.+.+...-...++..++..+.
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 788899999889999999999988888874443 44556778888888888888878788878889999988873
Q ss_pred CC----CchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCCh--hHHHHHHhcC
Q 015537 212 GQ----PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAG 285 (405)
Q Consensus 212 ~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~ 285 (405)
++ ...+...+...+|+.+.........-....++....-+++. ....+..++..|-+...+.+ ..+..+++.+
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l 361 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL 361 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 12 13456666666666666554333333335566655555554 55667888889988887765 6677788887
Q ss_pred ChHHHHHhcC-CCC---------cchHHHHHHHHhHhhc
Q 015537 286 VFPRLAEFLM-HPS---------PSVLIPALRTVGNIVT 314 (405)
Q Consensus 286 ~l~~L~~lL~-~~~---------~~v~~~a~~~l~nl~~ 314 (405)
++..+..+.- .+. ...-...+.+|+.+..
T Consensus 362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 7777766653 221 1334455666665554
No 111
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.014 Score=59.52 Aligned_cols=309 Identities=14% Similarity=0.099 Sum_probs=183.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
.+..|+..+.+.|..++-.|+.-+.++.+.- | . .+. ..++...++++...+.+..=..|+.+|+.++...----.
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rl--p-~-~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRL--P-P-ELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccC--c-H-HHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 3667777888889999999999999998754 3 1 111 224666666666544345556888899988875221111
Q ss_pred HHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh----hCCCchhHHHH
Q 015537 154 VVIDHGAVPIFVKLLYS--------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL----NGQPKLSMLRN 221 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~--------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l----~~~~~~~~~~~ 221 (405)
.+. .++|.++.-|.- ....|++.|+++++-++...... .+ + +.+..|...| .-+.+..+++.
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~--~l-~-p~l~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS--DL-K-PVLQSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh--hh-h-HHHHHHHHHHHHHHhcCchhhHhHH
Confidence 111 345555555532 35678999999988888544321 11 1 1222222222 25667888999
Q ss_pred HHHHHHHhhcCCCCC----Chh-----------------------hhhccHHHHH-hh----hcCCChHHHHHHHHHHHH
Q 015537 222 ATWTLSNFCRGKPQP----PFD-----------------------QVSPALPALA-HL----IHSNDDEVLTDACWALSY 269 (405)
Q Consensus 222 a~~~l~~l~~~~~~~----~~~-----------------------~~~~~l~~L~-~l----l~~~d~~v~~~a~~~l~~ 269 (405)
|..++-......++. ... ...+....++ ++ +.+=|+.++..+.|+|..
T Consensus 491 AsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~ 570 (1133)
T KOG1943|consen 491 ASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHK 570 (1133)
T ss_pred HHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 999888666543221 100 0122222222 22 234489999999999999
Q ss_pred hccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhH---HHHHh---cCc---hHHH-HHhhcCC
Q 015537 270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT---QCVIE---YQA---LPCL-LNLLSGN 339 (405)
Q Consensus 270 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~---~~~~~---~g~---l~~L-~~ll~~~ 339 (405)
|+...++. ...+.++.+++...+.+...+..+..+.|.+..+..... ..+.+ .+. ++.+ ...+..+
T Consensus 571 Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg 646 (1133)
T KOG1943|consen 571 LSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRG 646 (1133)
T ss_pred HHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccc
Confidence 98766543 345678888888888888888777777777664322111 10110 121 2222 2222222
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 340 YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 340 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
...-++...+..+-++........+..+-.+....+.+.+... ..+|..|.|+++-+|
T Consensus 647 ~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~------n~i~~~av~av~~l~ 704 (1133)
T KOG1943|consen 647 QGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP------NQIRDAAVSAVSDLV 704 (1133)
T ss_pred hHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch------HHHHHHHHHHHHHHH
Confidence 2245667777888888776665555555555555555555221 169999999999887
No 112
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.87 E-value=9.8e-05 Score=54.19 Aligned_cols=68 Identities=16% Similarity=0.341 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 015537 133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200 (405)
Q Consensus 133 ~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~ 200 (405)
++...+.+|+|++..++..++.+.+.|++|.++..-. ..+|-+++.|+|++.|++.++++.++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3667889999999999999999999999999998654 4689999999999999999999988777643
No 113
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.85 E-value=0.00066 Score=59.47 Aligned_cols=226 Identities=13% Similarity=0.099 Sum_probs=147.0
Q ss_pred CChHHHHHHHHHHHHhhccCCCCchHHH-HhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCchhHHHHHhC-CCh
Q 015537 85 NDSGVQYECTTQFRKLLSIERSPPIEEV-IRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDH-GAV 161 (405)
Q Consensus 85 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~-~~~g~l~~Li~lL~~~~-~~~~~~~a~~~L~ni~~~~~~~~~~~~~~-g~i 161 (405)
=++-++..|++++.++... .+..... .+...-..+++++++.- ..++|+..+.++.-++.. +++.+.+-.- ..+
T Consensus 161 i~~lTrlfav~cl~~l~~~--~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~dli 237 (432)
T COG5231 161 IDFLTRLFAVSCLSNLEFD--VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHHHhhhhhh--HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHHHHH
Confidence 3455777777888777542 2333332 24455677888887632 268999999999999887 5555333221 456
Q ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHhhCCCh--hhHHHHHhcCChHHHHHhhhC--CCchhHHHHHHHHHHHhhc-----
Q 015537 162 PIFVKLLYSP-SDDVREQAVWALGNIAGDSP--RCRDLVLSQGGLVPLLAQLNG--QPKLSMLRNATWTLSNFCR----- 231 (405)
Q Consensus 162 ~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~--~~~~~i~~~~~i~~L~~~l~~--~~~~~~~~~a~~~l~~l~~----- 231 (405)
..|+++.+.. ...+-+.++..+.|++...| ....... .|-+.+-++.|.. ..|+++....-..=+.|..
T Consensus 238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 6777777653 56788899999999987442 2222222 3334455555532 2355544333222221111
Q ss_pred -----------------CCCCCChhh-----------hhccHHHHHhhhcCCChH-HHHHHHHHHHHhccCChhHHHHHH
Q 015537 232 -----------------GKPQPPFDQ-----------VSPALPALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVI 282 (405)
Q Consensus 232 -----------------~~~~~~~~~-----------~~~~l~~L~~ll~~~d~~-v~~~a~~~l~~l~~~~~~~~~~~~ 282 (405)
.++.....+ ...++..|.++++..++. ...-||.-+..+....++....+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 111111111 135677788888887655 667788888999989999888889
Q ss_pred hcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 283 ~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~ 314 (405)
+.|+-..++.++.+++++++-.|+.++..+..
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999999999877653
No 114
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.85 E-value=4.9e-05 Score=46.13 Aligned_cols=39 Identities=38% Similarity=0.758 Sum_probs=36.0
Q ss_pred chhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015537 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187 (405)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~ 187 (405)
++.+..+++.|+++.|+.++.+++++++..++|+|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 457788899999999999999999999999999999997
No 115
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00011 Score=67.75 Aligned_cols=310 Identities=15% Similarity=0.118 Sum_probs=167.0
Q ss_pred CHHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC----
Q 015537 74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG---- 147 (405)
Q Consensus 74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~---- 147 (405)
........+.+. -..+++++.++|.-++.. -.........+...+...+.... +.++..++.++..+..+
T Consensus 254 ~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~---~~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~ 329 (728)
T KOG4535|consen 254 SGSDAGSAAGSTYEPSPMRLEALQVLTLLARY---FSMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQ 329 (728)
T ss_pred chhhHHhhhcCccCCchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhh
Confidence 455566666653 346888888888766421 11111112222333333444555 89999999888776432
Q ss_pred -CchhHHHHHhCCChHHH------HHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh---hCCCch
Q 015537 148 -TSEHTKVVIDHGAVPIF------VKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL---NGQPKL 216 (405)
Q Consensus 148 -~~~~~~~~~~~g~i~~L------~~lL-~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l---~~~~~~ 216 (405)
.|+..+.-+..|.+-.. -..+ .+..+..+...+.++.+|....... +..|--...+.++ .++++.
T Consensus 330 ~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~----lpn~~~T~~~~Fl~GC~d~~~~ 405 (728)
T KOG4535|consen 330 YKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN----LPNDRQTLCITFLLGCNDSKNR 405 (728)
T ss_pred cCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC----CCCcchhhhHHHHhcccchHHH
Confidence 22222222222211111 0111 2234556667777777775322110 0111111111222 133455
Q ss_pred hHHHHHHHHHHHhhcCC-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC----Ch---hHHHHHHhcCChH
Q 015537 217 SMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG----TN---DKIQAVIEAGVFP 288 (405)
Q Consensus 217 ~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~----~~---~~~~~~~~~~~l~ 288 (405)
-++..+..++..+.-++ ...+...+..+...+...+.+..-..+..+.|+++++++. -+ .....+.. -.+.
T Consensus 406 lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~ 484 (728)
T KOG4535|consen 406 LVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLL 484 (728)
T ss_pred HHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHH
Confidence 56777777777777765 3344445566666666666666677899999999999853 11 11111111 1122
Q ss_pred HHHHhc---CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHH----HHHhhc---CCCchhHHHHHHHHHHHHhcC
Q 015537 289 RLAEFL---MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC----LLNLLS---GNYKKSIKKEACWTVSNITAG 358 (405)
Q Consensus 289 ~L~~lL---~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~----L~~ll~---~~~~~~v~~~a~~~L~nl~~~ 358 (405)
.++..- ......|+..++++|||+..- .+.+.+.++-+. +..++. .+...+||-.+|++++|+..+
T Consensus 485 ~~~~~A~~~~Ad~dkV~~navraLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 485 KMLRSAIEASADKDKVKSNAVRALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence 333222 234678999999999999852 222333322111 112222 222678999999999999864
Q ss_pred CHHHHH-HHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537 359 NREQIQ-VIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCL 400 (405)
Q Consensus 359 ~~~~~~-~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~ 400 (405)
..--.+ .=+..-+++.|+.++....+. +||-.|+-||+
T Consensus 561 ~a~~lq~~~wA~~~F~~L~~Lv~~~~NF----KVRi~AA~aL~ 599 (728)
T KOG4535|consen 561 PALPLQTAPWASQAFNALTSLVTSCKNF----KVRIRAAAALS 599 (728)
T ss_pred ccccccCCCchHHHHHHHHHHHHHhccc----eEeehhhhhhc
Confidence 221112 123456788899998887776 78888877765
No 116
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.82 E-value=0.0017 Score=66.41 Aligned_cols=233 Identities=15% Similarity=0.118 Sum_probs=150.4
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccC-CCCchHH-HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc--
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIE-RSPPIEE-VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS-- 149 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~-~~~~~~~-~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~-- 149 (405)
.+|-++.++..+...+|..|+..|..++..= +-++.+. +.-.-++|.|-.++.+++...++..-+.+|+.+|..-.
T Consensus 463 VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rF 542 (1431)
T KOG1240|consen 463 VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRF 542 (1431)
T ss_pred hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHH
Confidence 3688888888888999999999999987542 2333443 44455789999999874435667666667766654211
Q ss_pred -hhHHHHHhC-------------------------CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh
Q 015537 150 -EHTKVVIDH-------------------------GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL 203 (405)
Q Consensus 150 -~~~~~~~~~-------------------------g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i 203 (405)
+..+.+... ++=+.+..+|.++.+.|+...+..|+-||..-.. .-...=++
T Consensus 543 le~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk---~ksND~iL 619 (1431)
T KOG1240|consen 543 LELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK---EKSNDVIL 619 (1431)
T ss_pred HHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh---cccccchH
Confidence 111111111 1123344455555666666666666666521100 00011135
Q ss_pred HHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHh
Q 015537 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 283 (405)
Q Consensus 204 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~ 283 (405)
..|+..| ++.|..++......|.-+|-.-.. ....+.++|.|.+-|.+..+-|...|+.++..|+....-....+.
T Consensus 620 shLiTfL-NDkDw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~- 695 (1431)
T KOG1240|consen 620 SHLITFL-NDKDWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK- 695 (1431)
T ss_pred HHHHHHh-cCccHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH-
Confidence 6677777 666887777776666655543211 112357889999999989999999999999999876543333333
Q ss_pred cCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537 284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 284 ~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~ 314 (405)
.+++.+..+|-+++.-+|..++.+|..+..
T Consensus 696 -~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 696 -DILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred -HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 467788889999999999999999988774
No 117
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.00099 Score=66.21 Aligned_cols=164 Identities=13% Similarity=0.095 Sum_probs=122.7
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc
Q 015537 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294 (405)
Q Consensus 215 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL 294 (405)
+..-....=.+++.+..+++ +..++|-+++.+.+.|.++..-.-.-+-.++...++..-. .+..+..=+
T Consensus 33 ~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avNti~kDl 101 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVNTIQKDL 101 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHhhc
Confidence 33444455566777777753 5567788888888888998888877777788777743321 357788888
Q ss_pred CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHH
Q 015537 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSI 374 (405)
Q Consensus 295 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 374 (405)
+++++.+|..|+++++.+= .++... .+++++.+++.++ ++.||+.|+.++.++-.-+++ ...+.|.+..
T Consensus 102 ~d~N~~iR~~AlR~ls~l~--~~el~~-----~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~ 170 (757)
T COG5096 102 QDPNEEIRGFALRTLSLLR--VKELLG-----NIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDKD---LYHELGLIDI 170 (757)
T ss_pred cCCCHHHHHHHHHHHHhcC--hHHHHH-----HHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCHh---hhhcccHHHH
Confidence 9999999999999998873 222222 5688899999999 999999999999999765554 3446778888
Q ss_pred HHHHHhcccccchhhhHHHHHHHHHhhhccC
Q 015537 375 IVAFFFMFLHFFFGAIIYKLAIWLCLVTCCE 405 (405)
Q Consensus 375 L~~lL~~~~~~~~~~~vr~~A~~al~n~~~~ 405 (405)
+..++... +|.|..+|..++..++-|
T Consensus 171 l~~l~~D~-----dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADS-----DPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCC-----CchHHHHHHHHHHHhchh
Confidence 88877544 357999999999888754
No 118
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.81 E-value=5.8e-05 Score=45.82 Aligned_cols=38 Identities=37% Similarity=0.690 Sum_probs=34.7
Q ss_pred hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (405)
Q Consensus 318 ~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (405)
.....+++.|+++.|+.++.++ ++.+++.++|+|+||+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHc
Confidence 3567788999999999999988 9999999999999996
No 119
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.0098 Score=57.77 Aligned_cols=300 Identities=18% Similarity=0.142 Sum_probs=182.2
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
+.-+-+++|.++-....+-+...+.-++..+ .+..+. ++..+..=|.+.+ +....-|+.+++|+.+ .+.+.
T Consensus 75 GhmEaV~LLss~kysEKqIGYl~is~L~n~n-~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~e 145 (938)
T KOG1077|consen 75 GHMEAVNLLSSNKYSEKQIGYLFISLLLNEN-SDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAE 145 (938)
T ss_pred chHHHHHHhhcCCccHHHHhHHHHHHHHhcc-hHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHH
Confidence 4456667777665555555555554444221 222222 2444555555666 7889999999999966 45555
Q ss_pred HHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 154 VVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
.+.. =|+ ++|-++ .+-++..++-+|..|...+|. .+-..+....++.+| ++.+..+...+...+.-|+.
T Consensus 146 a~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk 216 (938)
T KOG1077|consen 146 AFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVK 216 (938)
T ss_pred Hhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHH
Confidence 4432 233 555553 456888999999999887774 333345678999999 77788888899999998988
Q ss_pred CCCCCChhhhhccHHHHHhhhc-------------CCChHHHHHHHHHHHHhccCCh-hHHHHHHhcCChHHHHHhcCCC
Q 015537 232 GKPQPPFDQVSPALPALAHLIH-------------SNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHP 297 (405)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~-------------~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~ 297 (405)
..|......+...+..|..... -+.|..+...+++|.++-...+ .....+. .+++.++...+..
T Consensus 217 ~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~ 294 (938)
T KOG1077|consen 217 KNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEP 294 (938)
T ss_pred cCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccC
Confidence 7654433333333333333221 1357888889999888733222 1111121 3344444444311
Q ss_pred --Cc-----chHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 015537 298 --SP-----SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370 (405)
Q Consensus 298 --~~-----~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 370 (405)
.. ..+...+.-.-+++.+-|...+.+. .....|-.++.+. ...+|--|.-..+.++...+. ++.+-.+
T Consensus 295 ~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~s-~davK~h- 369 (938)
T KOG1077|consen 295 PKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIRYLALESMCKLASSEFS-IDAVKKH- 369 (938)
T ss_pred ccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccchhhhHHHHHHHHhccch-HHHHHHH-
Confidence 11 2233333333445544443333332 3577788899888 889999998888888765333 3444333
Q ss_pred cHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 371 AFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 371 ~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
...++..|+.+.+- .||+.|.-.|=-+|
T Consensus 370 -~d~Ii~sLkterDv----SirrravDLLY~mc 397 (938)
T KOG1077|consen 370 -QDTIINSLKTERDV----SIRRRAVDLLYAMC 397 (938)
T ss_pred -HHHHHHHhccccch----HHHHHHHHHHHHHh
Confidence 77888888866555 69998888877777
No 120
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.006 Score=52.32 Aligned_cols=242 Identities=17% Similarity=0.240 Sum_probs=144.8
Q ss_pred CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHH
Q 015537 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF 164 (405)
Q Consensus 85 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L 164 (405)
.-..-++.|+..|+++.... . +..+.+...+++ ..++.+.+++|+..... .+++.|
T Consensus 17 ~~l~~r~rALf~Lr~l~~~~---~---------i~~i~ka~~d~s-~llkhe~ay~LgQ~~~~-----------~Av~~l 72 (289)
T KOG0567|consen 17 QPLQNRFRALFNLRNLLGPA---A---------IKAITKAFIDDS-ALLKHELAYVLGQMQDE-----------DAVPVL 72 (289)
T ss_pred HHHHHHHHHHHhhhccCChH---H---------HHHHHHhcccch-hhhccchhhhhhhhccc-----------hhhHHH
Confidence 34567788888888886432 1 455555555554 57778888888887654 578999
Q ss_pred HHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC------C
Q 015537 165 VKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ------P 236 (405)
Q Consensus 165 ~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~------~ 236 (405)
+..|.+ ..+-|+..|..+|+.+. +.. ..+.+-++. +++-..+...+..++..+-..... .
T Consensus 73 ~~vl~desq~pmvRhEAaealga~~-~~~----------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~ 140 (289)
T KOG0567|consen 73 VEVLLDESQEPMVRHEAAEALGAIG-DPE----------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSS 140 (289)
T ss_pred HHHhcccccchHHHHHHHHHHHhhc-chh----------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccC
Confidence 998876 46778889999999986 221 233344444 666667777666676666443210 0
Q ss_pred Chhhh-------hccHHHHHh-hhcCCChHHHH-HHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHH
Q 015537 237 PFDQV-------SPALPALAH-LIHSNDDEVLT-DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR 307 (405)
Q Consensus 237 ~~~~~-------~~~l~~L~~-ll~~~d~~v~~-~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 307 (405)
..... .+-+.-+-. ++..+.+.... .+...|.++ +.++. +..+++-+..++.-.+..+..
T Consensus 141 p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~--g~Eea---------I~al~~~l~~~SalfrhEvAf 209 (289)
T KOG0567|consen 141 PYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI--GTEEA---------INALIDGLADDSALFRHEVAF 209 (289)
T ss_pred ccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc--CcHHH---------HHHHHHhcccchHHHHHHHHH
Confidence 11111 122222322 33333333333 333333333 12222 345666677777788999999
Q ss_pred HHhHhhcCChhhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccc
Q 015537 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFF 386 (405)
Q Consensus 308 ~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~ 386 (405)
++|.+-+. -.++.|.+.|... ..+.+|.+|+.+|+.++ +++.+ +.|.+.+...
T Consensus 210 VfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa--~e~~~---------~vL~e~~~D~---- 263 (289)
T KOG0567|consen 210 VFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIA--DEDCV---------EVLKEYLGDE---- 263 (289)
T ss_pred HHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc--CHHHH---------HHHHHHcCCc----
Confidence 99987532 2356666666543 37899999999999995 33432 3344444332
Q ss_pred hhhhHHHHHHHHHh
Q 015537 387 FGAIIYKLAIWLCL 400 (405)
Q Consensus 387 ~~~~vr~~A~~al~ 400 (405)
++-|++.+..|+.
T Consensus 264 -~~vv~esc~vald 276 (289)
T KOG0567|consen 264 -ERVVRESCEVALD 276 (289)
T ss_pred -HHHHHHHHHHHHH
Confidence 3468888877764
No 121
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.01 Score=58.33 Aligned_cols=235 Identities=16% Similarity=0.188 Sum_probs=149.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
-+|.+++.+-+.+.++....-..|-..+-.. +....+ -|.+|-+-|.+++ +.+|..|+++|..|=-
T Consensus 72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeq--pdLALL----SIntfQk~L~DpN-~LiRasALRvlSsIRv------- 137 (968)
T KOG1060|consen 72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQ--PDLALL----SINTFQKALKDPN-QLIRASALRVLSSIRV------- 137 (968)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcC--CCceee----eHHHHHhhhcCCc-HHHHHHHHHHHHhcch-------
Confidence 4788888888888888877777776665332 222111 2778888899988 8899888888876532
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
.++..-++-++-....+..+.|+..|+.+|-.+-.-+++.++.+. .++..|..+.++.|.-.|+.++-.+|-+.
T Consensus 138 p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~------e~I~~LLaD~splVvgsAv~AF~evCPer 211 (968)
T KOG1060|consen 138 PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE------EVIKKLLADRSPLVVGSAVMAFEEVCPER 211 (968)
T ss_pred hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH------HHHHHHhcCCCCcchhHHHHHHHHhchhH
Confidence 122211233344455678999999999999999877776655433 34444448889999999999999888653
Q ss_pred CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC---hhH----------------------HHHHHhc---C
Q 015537 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT---NDK----------------------IQAVIEA---G 285 (405)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~---~~~----------------------~~~~~~~---~ 285 (405)
...+.+-...+..+|..-|..=+...+..|...+... +.. .....+. -
T Consensus 212 ----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~l 287 (968)
T KOG1060|consen 212 ----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKL 287 (968)
T ss_pred ----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHH
Confidence 3444555566666665555555555555555554320 000 0000000 1
Q ss_pred ChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC
Q 015537 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN 339 (405)
Q Consensus 286 ~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~ 339 (405)
++...-.+|.+.++.+...++.+...++-.++ .. ++.+.|+.+|.+.
T Consensus 288 LL~stkpLl~S~n~sVVmA~aql~y~lAP~~~--~~-----~i~kaLvrLLrs~ 334 (968)
T KOG1060|consen 288 LLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ--VT-----KIAKALVRLLRSN 334 (968)
T ss_pred HHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH--HH-----HHHHHHHHHHhcC
Confidence 23444556778888888888888888875432 11 3466677777654
No 122
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.036 Score=51.11 Aligned_cols=240 Identities=13% Similarity=0.143 Sum_probs=161.8
Q ss_pred HHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc---------hhHHHHHhCCChHH
Q 015537 93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS---------EHTKVVIDHGAVPI 163 (405)
Q Consensus 93 a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~---------~~~~~~~~~g~i~~ 163 (405)
.++.+.-++.. ..-...+++.++++.|+.+|.+.+ .++-...+..|..++..+. .....+++.++++.
T Consensus 104 ~IQ~mhvlAt~--PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 104 IIQEMHVLATM--PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHhhhcC--hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 34444444321 233346889999999999999999 8999999999988876431 23566888899999
Q ss_pred HHHhhCCCC------HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCC-CchhHHHHHHHHHHHhhcCCC-C
Q 015537 164 FVKLLYSPS------DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKP-Q 235 (405)
Q Consensus 164 L~~lL~~~~------~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~-~~~~~~~~a~~~l~~l~~~~~-~ 235 (405)
|++-+..-+ ..-...++..+-|+..-.+.+...+.+.|.+..|+..+... .-..-..++...++-+-.+.. .
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence 999887533 33456778888899988888888888999999888866333 344556677777777766642 2
Q ss_pred CChhhhhccHHHHHhhh---cCC------ChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHH
Q 015537 236 PPFDQVSPALPALAHLI---HSN------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL 306 (405)
Q Consensus 236 ~~~~~~~~~l~~L~~ll---~~~------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 306 (405)
....---.++..++.-+ +.. ..+...+...+|+.+.-.. .....++...++..+.-+++. ....+..++
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~-~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Sal 338 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAP-ANRERFLKGEGLQLMNLMLRE-KKVSRGSAL 338 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcCh-hhhhhhhccccHHHHHHHHHH-HHHhhhhHH
Confidence 11111123444443332 122 2456677777777665444 344567777777777666665 445677899
Q ss_pred HHHhHhhcCCh--hhHHHHHhcCchHHHHHhhc
Q 015537 307 RTVGNIVTGDD--MQTQCVIEYQALPCLLNLLS 337 (405)
Q Consensus 307 ~~l~nl~~~~~--~~~~~~~~~g~l~~L~~ll~ 337 (405)
++|-.+..|.+ .....+++.+++..+..+..
T Consensus 339 kvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 339 KVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 99999998887 55566777777777766665
No 123
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.011 Score=52.31 Aligned_cols=300 Identities=11% Similarity=0.104 Sum_probs=179.6
Q ss_pred HHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh----HHHHHhCCChHHHHH
Q 015537 91 YECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH----TKVVIDHGAVPIFVK 166 (405)
Q Consensus 91 ~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~----~~~~~~~g~i~~L~~ 166 (405)
..++.+|..+.... .... +..+..|.|-.-|..++ ..++.-++..++-|..+.+.+ ...+++.|+++.++.
T Consensus 61 tlcVscLERLfkak--egah--lapnlmpdLQrGLiadd-asVKiLackqigcilEdcDtnaVseillvvNaeilklild 135 (524)
T KOG4413|consen 61 TLCVSCLERLFKAK--EGAH--LAPNLMPDLQRGLIADD-ASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILD 135 (524)
T ss_pred hhHHHHHHHHHhhc--cchh--hchhhhHHHHhcccCCc-chhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHH
Confidence 33666776665432 1111 12234555555566666 789999999999988875522 344668899999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHH--HhhhCCCchhHHHHHHHHHHHhhcCCC-CCChhhhhc
Q 015537 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL--AQLNGQPKLSMLRNATWTLSNFCRGKP-QPPFDQVSP 243 (405)
Q Consensus 167 lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~--~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~ 243 (405)
.+-..+.++...|+..+..++.... .-..+.+.+..+++- ++-.+. +.-++..+...+..+..-.| ........|
T Consensus 136 cIggeddeVAkAAiesikrialfpa-aleaiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSG 213 (524)
T KOG4413|consen 136 CIGGEDDEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSG 213 (524)
T ss_pred HHcCCcHHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhh
Confidence 9999999999999999999997655 335566666555432 222122 33345555555555555432 223334477
Q ss_pred cHHHHHhhhcC-CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC--CcchHHHHHHHHhHhhcCChh--
Q 015537 244 ALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDM-- 318 (405)
Q Consensus 244 ~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~-- 318 (405)
++..|..=++. .|.-|+..++.....|+..... .+.+-+.|+++.+..++... +|--.-.++...|.+.....-
T Consensus 214 LldlLeaElkGteDtLVianciElvteLaeteHg-reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimd 292 (524)
T KOG4413|consen 214 LLDLLEAELKGTEDTLVIANCIELVTELAETEHG-REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMD 292 (524)
T ss_pred HHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh-hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhh
Confidence 88777666654 6788888888888888754333 35567779999999888543 333333355555555422110
Q ss_pred -hHHHHHhc--CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHH
Q 015537 319 -QTQCVIEY--QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLA 395 (405)
Q Consensus 319 -~~~~~~~~--g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A 395 (405)
..+.+.+. -+++....++... ++.....|.-+++-+.+.... .+.+.+. .-|..-+++.+-.+..-+ .=+..|
T Consensus 293 vseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGSnteG-adlllkT-gppaaehllarafdqnah-akqeaa 368 (524)
T KOG4413|consen 293 VSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGSNTEG-ADLLLKT-GPPAAEHLLARAFDQNAH-AKQEAA 368 (524)
T ss_pred cCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccCCcch-hHHHhcc-CChHHHHHHHHHhccccc-chHHHH
Confidence 00111111 1344455666677 899999999999999665443 3444443 334444444333322101 123455
Q ss_pred HHHHhhh
Q 015537 396 IWLCLVT 402 (405)
Q Consensus 396 ~~al~n~ 402 (405)
..+|.|.
T Consensus 369 ihaLaaI 375 (524)
T KOG4413|consen 369 IHALAAI 375 (524)
T ss_pred HHHHHHh
Confidence 6666654
No 124
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.68 E-value=0.0062 Score=58.36 Aligned_cols=231 Identities=16% Similarity=0.134 Sum_probs=152.7
Q ss_pred CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC-----CCHHHHHHHHHHHHHHhcCCchhHHHHHhC
Q 015537 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-----DYPQLQFEAAWALTNIASGTSEHTKVVIDH 158 (405)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~-----~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~ 158 (405)
..++.+..+|+++|.|++-.+ ....+.+.+.|..+.++..|+.. + .++.+...++|--++..+++.+..+++.
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIEE 120 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 467899999999999998754 44456677899999999999876 4 7899999999999998888888777766
Q ss_pred -CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhC--------
Q 015537 159 -GAVPIFVKLLYS-----------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-------- 212 (405)
Q Consensus 159 -g~i~~L~~lL~~-----------------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~-------- 212 (405)
+++..+...|.. .+......++.++.|+..+.+.... -...+.++.++..+..
T Consensus 121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~ 199 (446)
T PF10165_consen 121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSS 199 (446)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCC
Confidence 677777776632 1345677888999999866654322 0122344555554421
Q ss_pred CCchhHHHHHHHHHHHhhcCCC---------C---CChhhhhccHHHHHhhhc----CC----ChHHHHHHHHHHHHhcc
Q 015537 213 QPKLSMLRNATWTLSNFCRGKP---------Q---PPFDQVSPALPALAHLIH----SN----DDEVLTDACWALSYLSD 272 (405)
Q Consensus 213 ~~~~~~~~~a~~~l~~l~~~~~---------~---~~~~~~~~~l~~L~~ll~----~~----d~~v~~~a~~~l~~l~~ 272 (405)
.+......+++.+|.|+--... . .........+..|+.+|. .. -.+.....+.+|..++.
T Consensus 200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~ 279 (446)
T PF10165_consen 200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR 279 (446)
T ss_pred CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence 2235667888888887721110 0 000111233444444442 21 14678888889998887
Q ss_pred CChhHHHHHHh----------------cCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh
Q 015537 273 GTNDKIQAVIE----------------AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (405)
Q Consensus 273 ~~~~~~~~~~~----------------~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 317 (405)
.+....+.+.. ..+-.+|+.++.+..+.++..+...+-.+|..+.
T Consensus 280 ~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 280 AAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred hcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 76444333321 1344568888888888888888888888875554
No 125
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.003 Score=59.80 Aligned_cols=278 Identities=13% Similarity=0.030 Sum_probs=137.8
Q ss_pred CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHH
Q 015537 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI 163 (405)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~ 163 (405)
+.-..++.++++.+..+... + ....+++ ..+..|-.+|++.. ...|+.|+++|..++...|+... -+=+-
T Consensus 275 ~k~emV~lE~Ar~v~~~~~~--n-v~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~-----vcN~e 344 (898)
T COG5240 275 DKFEMVFLEAARAVCALSEE--N-VGSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVS-----VCNKE 344 (898)
T ss_pred CcchhhhHHHHHHHHHHHHh--c-cCHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceee-----ecChh
Confidence 33467777777777766421 1 1112222 23666777777777 67888888888888776554221 11123
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhc
Q 015537 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP 243 (405)
Q Consensus 164 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 243 (405)
+-.++.+.+..+-..|+.+|..- +..+.-+.++ ..+..++ .+-+......+..++..||-..|......
T Consensus 345 vEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv-----~~I~sfv-hD~SD~FKiI~ida~rsLsl~Fp~k~~s~--- 413 (898)
T COG5240 345 VESLISDENRTISTYAITTLLKT--GTEETIDRLV-----NLIPSFV-HDMSDGFKIIAIDALRSLSLLFPSKKLSY--- 413 (898)
T ss_pred HHHHhhcccccchHHHHHHHHHc--CchhhHHHHH-----HHHHHHH-HhhccCceEEeHHHHHHHHhhCcHHHHHH---
Confidence 33445555555554444444332 1111112211 1222222 23333444445555566665555444333
Q ss_pred cHHHHHhhh-cCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHH
Q 015537 244 ALPALAHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC 322 (405)
Q Consensus 244 ~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 322 (405)
+..|...| +.+.-+....+..+++.+....++.... +++.|..++.+.. ...-++++||-+....+....
T Consensus 414 -l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDce--y~~I~vrIL~iLG~EgP~a~~- 484 (898)
T COG5240 414 -LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCE--YHQITVRILGILGREGPRAKT- 484 (898)
T ss_pred -HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcc--hhHHHHHHHHHhcccCCCCCC-
Confidence 33333322 3445667777777777777666554432 2355555554322 223344444444432221100
Q ss_pred HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 323 ~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
-...+..+..-+--. +.-+|..|..+|+.++-.-.+ ......+...|-++|+..++ .||..|.+++.|+
T Consensus 485 --P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~Dd-----eVRdrAsf~l~~~ 553 (898)
T COG5240 485 --PGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDD-----EVRDRASFLLRNM 553 (898)
T ss_pred --cchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccH-----HHHHHHHHHHHhh
Confidence 001333444444444 567788888888777542111 11112233455666655433 3888888887764
No 126
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.57 E-value=0.0007 Score=49.74 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=58.1
Q ss_pred hHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015537 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQVIMH 368 (405)
Q Consensus 301 v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 368 (405)
++...+++|||++..+....+.+.+.|++|.++....-. .+|.+|+-|.|++-|++.++++..+.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 456789999999999999999999999999999987643 38999999999999999999987555443
No 127
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.57 E-value=0.013 Score=54.50 Aligned_cols=224 Identities=16% Similarity=0.079 Sum_probs=143.8
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCC-CchhHHHHHHHHHHHhhcCCCCCChh
Q 015537 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFD 239 (405)
Q Consensus 161 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~ 239 (405)
.+.+..++-+++.+++..+..++..+..+.... ..+.+.+.--.++.-|..+ ++..-+.+|...+..+...+. ....
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~~ 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPKE 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Cccc
Confidence 344443444445999999999999999887654 4555655544555555433 355567888888888887642 2222
Q ss_pred hhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhh
Q 015537 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (405)
Q Consensus 240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 319 (405)
.-.+++..++.+..+.++..+..++.+|..++-.+++ .+..+|++..++..+..+..++....+.++-.+.... ..
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p-~t 180 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSP-RT 180 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCc-ch
Confidence 3467888999999999999999999999999988875 4788999999999998766667788888888887543 34
Q ss_pred HHHHHhcCchHHHHHhhcCC------Cch--hHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHHHHHhcccccchhhh
Q 015537 320 TQCVIEYQALPCLLNLLSGN------YKK--SIKKEACWTVSNITAGNREQIQVIMH-VHAFSIIVAFFFMFLHFFFGAI 390 (405)
Q Consensus 320 ~~~~~~~g~l~~L~~ll~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~lL~~~~~~~~~~~ 390 (405)
++++...--++.+..-+.+. .+. ..-+.+..++.-+...=+..+....+ ...+..|++.|.... +.
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~-----~~ 255 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN-----PE 255 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC-----HH
Confidence 44444333344444444333 022 23344556666665432221111111 245666777775542 24
Q ss_pred HHHHH
Q 015537 391 IYKLA 395 (405)
Q Consensus 391 vr~~A 395 (405)
+|+..
T Consensus 256 ir~~I 260 (371)
T PF14664_consen 256 IRKAI 260 (371)
T ss_pred HHHHH
Confidence 66643
No 128
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.56 E-value=0.01 Score=59.20 Aligned_cols=140 Identities=18% Similarity=0.175 Sum_probs=107.6
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
++.+++.+.+.|.++..-.-..|..+.... | +..+- .++.+.+=+.+++ +.+|..|++.++-+=. ++
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~--P--~~~lL--avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~e---- 123 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLK--P--ELALL--AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KE---- 123 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccC--H--HHHHH--HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HH----
Confidence 677788777888888877777777776543 2 22222 3778888888888 9999999999988733 22
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
++ ..+++++.+++.++++.|+..|+.|+.++-.-++ +.+.+.|.+..+..++ .+.++.+..+|+.++..+...
T Consensus 124 l~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 124 LL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 22 2468899999999999999999999999986655 4555666666666666 899999999999999988765
No 129
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.54 E-value=0.00087 Score=66.63 Aligned_cols=188 Identities=17% Similarity=0.121 Sum_probs=130.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH-------------HHHHhcCChHHHHHhhhCCCchhHHHHHHHHH
Q 015537 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR-------------DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (405)
Q Consensus 160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~-------------~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l 226 (405)
+...|+.+|+. +++-..+..++.-+..|++... +.+. ..+++.++..+ ...+...+.+...+|
T Consensus 816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~-~t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKF-ETAPGSQKHNYLEAL 891 (1030)
T ss_pred HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHh-ccCCccchhHHHHHH
Confidence 34556666664 4555667777777776665432 2222 23567777777 456777888889999
Q ss_pred HHhhcCCCCC-ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCC---cchH
Q 015537 227 SNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS---PSVL 302 (405)
Q Consensus 227 ~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~ 302 (405)
+++..+-|.. ....+..++|.|++.|.-+|..++..+..++.-+....+.....-++ -++|.++.+=++.+ ..+|
T Consensus 892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHH
Confidence 9988865543 23445788899999999999999999999998877654433222221 34567766665555 5789
Q ss_pred HHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 015537 303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (405)
Q Consensus 303 ~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~ 353 (405)
..|+.+++.+...-+...-......++..|.+.|+++ ...||++|.-+=.
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhh
Confidence 9999999999975554433344556888899999998 8899999876533
No 130
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.51 E-value=0.01 Score=53.89 Aligned_cols=190 Identities=19% Similarity=0.230 Sum_probs=125.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHh---cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--Cc
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR---SGVVPRFVEFLLREDYPQLQFEAAWALTNIASG--TS 149 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~---~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~--~~ 149 (405)
+...+..+.......+..++..+.+++... ....++. ..+++.+.+.++.+. ..-+..|+.+++-++-. ..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~---~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSR---YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCC
Confidence 677788888778999999999999998653 2233332 345778888888887 56666777776665543 23
Q ss_pred hhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhh---CCChhhHHHHHhcCChHHHHH--hhhC---------C
Q 015537 150 EHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIA---GDSPRCRDLVLSQGGLVPLLA--QLNG---------Q 213 (405)
Q Consensus 150 ~~~~~~~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~---~~~~~~~~~i~~~~~i~~L~~--~l~~---------~ 213 (405)
.....+++ ...|.|...+.+. .+.++..++.+|+-++ +..+......++ .+..+.. .... .
T Consensus 121 ~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 121 EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence 44445554 5778888888864 4566677777777654 333322221111 2221111 1111 1
Q ss_pred CchhHHHHHHHHHHHhhcCCCCCC-hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 015537 214 PKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (405)
Q Consensus 214 ~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (405)
+++.+...++.++.-|...-|... .......+|.|..+|.++|.+|+..|-.+|+-+.
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 246788888888888876654422 2344778999999999999999999998888764
No 131
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.47 E-value=0.01 Score=59.16 Aligned_cols=246 Identities=15% Similarity=0.091 Sum_probs=160.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHH
Q 015537 128 EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPL 206 (405)
Q Consensus 128 ~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L 206 (405)
+..|.+-..+.|.+...++........+- -++...+..+. +..+.++-.|+.+++..++... +.. ...++++.|
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~--~~p~ild~L 535 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLS--LQPMILDGL 535 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccc--cchHHHHHH
Confidence 33477777899999876664322221111 12233333333 3455677777777777763221 111 133456666
Q ss_pred HHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhh--cCCChHHHHHHHHHHHHhccCChhHHHHHHhc
Q 015537 207 LAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI--HSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 284 (405)
Q Consensus 207 ~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll--~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 284 (405)
+.+. ...+.++......+|+..|..+|......-..+.|....++ .++||.+...+--++-.++.... +.. -...
T Consensus 536 ~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g-~m~e 612 (1005)
T KOG2274|consen 536 LQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYG-PMQE 612 (1005)
T ss_pred HHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhc-chHH
Confidence 6666 66678899999999999999988777777778888776655 35678777777777766664221 111 2223
Q ss_pred CChHHHHHhcCCCC----cchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 015537 285 GVFPRLAEFLMHPS----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (405)
Q Consensus 285 ~~l~~L~~lL~~~~----~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 360 (405)
..+|.++..|..+. .....-++..|..+..+.+.-....+-.-++|.+.++.-++.+...-..+--+|..+...+.
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 46899999998766 56677788888888876654444444456788888887776588888888899999988888
Q ss_pred HHHHHHHHhCcHH--HHHHHHhc
Q 015537 361 EQIQVIMHVHAFS--IIVAFFFM 381 (405)
Q Consensus 361 ~~~~~l~~~~~i~--~L~~lL~~ 381 (405)
++...-...+++. .++++++.
T Consensus 693 eq~~t~~~e~g~~~~yImqV~sq 715 (1005)
T KOG2274|consen 693 EQLLTWHDEPGHNLWYIMQVLSQ 715 (1005)
T ss_pred HHHHhhccCCCccHHHHHHHHHH
Confidence 8776666555555 55555443
No 132
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.46 E-value=0.019 Score=57.40 Aligned_cols=264 Identities=12% Similarity=0.016 Sum_probs=159.4
Q ss_pred CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHH
Q 015537 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI 163 (405)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~ 163 (405)
+..|....++.+.+.++.+.. .....+ ..-++...+..+..+..+.++..|+.+++..++ .+.... ...+++..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~-~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSST--VINPQL-LQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-LQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhh--ccchhH-HHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-cchHHHHH
Confidence 456777778888888876532 111111 122344555556555547788889888888773 222211 22377888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh-CCCchhHHHHHHHHHHHhhcCCCCCChhhhh
Q 015537 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVS 242 (405)
Q Consensus 164 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 242 (405)
|.++....+.++.-....+|+..+..+|+..... +..+.+..+.++. .+.|+.+...+--++-.++... ........
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~-~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASM-ESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE 612 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhh-hcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence 8888888889999999999999999888765443 4445666666553 5567888777777777777742 22233446
Q ss_pred ccHHHHHhhhcCCC----hHHHHHHHHHHHHhccCCh-hHHHHHHhcCChHHHHHhc-CCCCcchHHHHHHHHhHhhcCC
Q 015537 243 PALPALAHLIHSND----DEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGD 316 (405)
Q Consensus 243 ~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~ 316 (405)
.++|.++..+..++ +....-++..|.-+..+.+ ..-+.++ .-++|.+.++. .+++......+-.||..+...+
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 78999999998765 4444555555554544432 2223233 23567776665 5666777778888888888766
Q ss_pred hhhHHHHHhcCch--HHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537 317 DMQTQCVIEYQAL--PCLLNLLSGNYKKSIKKEACWTVSNIT 356 (405)
Q Consensus 317 ~~~~~~~~~~g~l--~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (405)
.++...--+.++. ..++..++.=-+++.-..+|..+|.+.
T Consensus 692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV 733 (1005)
T KOG2274|consen 692 LEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLV 733 (1005)
T ss_pred HHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHH
Confidence 5544333222222 244443331113344444444555443
No 133
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.46 E-value=0.0028 Score=57.80 Aligned_cols=212 Identities=14% Similarity=0.123 Sum_probs=146.1
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-----HHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-----RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~-----~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~ 228 (405)
.+...+.+..|+..|..-+-+.+..+..+++++....... .+.+.. ..-..+..++....++++.-.+...|..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 3455588899999999888889999999999998554322 233322 1233344444445577788888888888
Q ss_pred hhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc---CChHHHHHhcCCCCcchHHHH
Q 015537 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPA 305 (405)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v~~~a 305 (405)
+++..+-.......+.+-.+...++.++-++..+|..++..+...........+.. .++.....+|.+++.-.+..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 88774322233335566667788888999999999999999776666555555554 456678889999999999999
Q ss_pred HHHHhHhhcCChh---hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHH
Q 015537 306 LRTVGNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG--NREQIQVIM 367 (405)
Q Consensus 306 ~~~l~nl~~~~~~---~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~ 367 (405)
+..||.+...... -..++-+..-+..++.+|.+. +..++-+|..++--+.++ .+..+..++
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K~~~I~~iL 295 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNKPPPIVDIL 295 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHH
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCCChHHHHHH
Confidence 9999999964432 234444566899999999999 999999999999988873 333355544
No 134
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.017 Score=58.29 Aligned_cols=260 Identities=17% Similarity=0.160 Sum_probs=152.7
Q ss_pred CcHHHHHHHhcC------C-CCHHHHHHHHHHHHHHhcCC--chhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 015537 116 GVVPRFVEFLLR------E-DYPQLQFEAAWALTNIASGT--SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI 186 (405)
Q Consensus 116 g~l~~Li~lL~~------~-~~~~~~~~a~~~L~ni~~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl 186 (405)
|+++.+++.|++ + +++.-+.-|+++++++++-- ..--+..++.-+++.+...++++.--++..|+|.++.+
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 567777888872 2 13667888999999988521 11112233444567777788888889999999999999
Q ss_pred hCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCC---hhhhhccHHHHHhhhcCCChHHHHHH
Q 015537 187 AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP---FDQVSPALPALAHLIHSNDDEVLTDA 263 (405)
Q Consensus 187 ~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~---~~~~~~~l~~L~~ll~~~d~~v~~~a 263 (405)
+...- .+...-..++....+.|.++.+..|+..++.+|..+..+.+... ...+.+.++.|+.+.+.-+.+....+
T Consensus 490 ~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 490 SSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred HhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 94332 12222233667778888668899999999999999998864332 23345666667777766666666665
Q ss_pred HHHHH-HhccCChhHHHHHHhcCChHHHHHhcCC---CCc---chHHHHHHHH---hHhhcCChhhHH--HHHhcCchHH
Q 015537 264 CWALS-YLSDGTNDKIQAVIEAGVFPRLAEFLMH---PSP---SVLIPALRTV---GNIVTGDDMQTQ--CVIEYQALPC 331 (405)
Q Consensus 264 ~~~l~-~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~---~v~~~a~~~l---~nl~~~~~~~~~--~~~~~g~l~~ 331 (405)
+..+. ..+..-......+. ..+...+.+++.. .++ +=...|..+| ..|...-+...+ .-++..+++.
T Consensus 568 me~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~v 646 (1010)
T KOG1991|consen 568 MEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPV 646 (1010)
T ss_pred HHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 55433 23322111111111 1344556666653 111 2223333333 333322222221 1234457888
Q ss_pred HHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 015537 332 LLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFM 381 (405)
Q Consensus 332 L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~ 381 (405)
+-.++.+. -..+=++++-.+.+++...++---.++ |+++.+.+++..
T Consensus 647 i~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~ 693 (1010)
T KOG1991|consen 647 IGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQD 693 (1010)
T ss_pred HHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhh
Confidence 88888887 778888888888888765443222222 445555555443
No 135
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.029 Score=57.81 Aligned_cols=242 Identities=13% Similarity=0.103 Sum_probs=154.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHHH
Q 015537 122 VEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVL 198 (405)
Q Consensus 122 i~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~--g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~-~~~~~i~ 198 (405)
.....+..+..+|..+-.+|..++.. +.....+.+. .+...|..-+++.....+...+.+|..|....+ +..+.+.
T Consensus 659 ~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~ 737 (1176)
T KOG1248|consen 659 DPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP 737 (1176)
T ss_pred hHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 33333333389999999999999887 3332222211 234555555566667778888888888775444 2222222
Q ss_pred hcCChHHHHHhhhCCCchhHHHHHHHHHHHhh--cCC----CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 015537 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC--RGK----PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (405)
Q Consensus 199 ~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~--~~~----~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (405)
. .++.++-.+ +.-+...++++..+|..++ ... ..+....+...++.+...+-.+...+....+.++..+..
T Consensus 738 k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 738 K--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred H--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 2 333333334 6778888999999998888 221 122345556777777666554444444444566665554
Q ss_pred CChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 015537 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (405)
Q Consensus 273 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L 352 (405)
...+....-.-.++++.+..+|.+++++++..|+..+..++..-++..-......+++.+..+++.. ...+|..+-..|
T Consensus 815 e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 815 EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLLL 893 (1176)
T ss_pred HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence 3322222222234567777788999999999999999999987765433333345889999988887 888999998888
Q ss_pred HHHhc-CCHHHHHHHHH
Q 015537 353 SNITA-GNREQIQVIMH 368 (405)
Q Consensus 353 ~nl~~-~~~~~~~~l~~ 368 (405)
--|+. ...+.++.+..
T Consensus 894 ekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 894 EKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHhCHHHHHhhCH
Confidence 88886 35555666655
No 136
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.36 E-value=0.027 Score=52.49 Aligned_cols=188 Identities=15% Similarity=0.104 Sum_probs=102.3
Q ss_pred CCCchhHHHHHHHHHHHhhcC-----CCCCChhhh-hccHHHHHh-------hhcCCChHHHHHHHHHHHHhccCChhHH
Q 015537 212 GQPKLSMLRNATWTLSNFCRG-----KPQPPFDQV-SPALPALAH-------LIHSNDDEVLTDACWALSYLSDGTNDKI 278 (405)
Q Consensus 212 ~~~~~~~~~~a~~~l~~l~~~-----~~~~~~~~~-~~~l~~L~~-------ll~~~d~~v~~~a~~~l~~l~~~~~~~~ 278 (405)
...++.++..+..++..+-.+ .|.....-. .+.+-.+.- ...+.-+......|-+++++.....+..
T Consensus 305 ~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~l 384 (728)
T KOG4535|consen 305 GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNL 384 (728)
T ss_pred CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCC
Confidence 455788888888888766543 232222111 121211110 1112234566777778877764322110
Q ss_pred HHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-
Q 015537 279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA- 357 (405)
Q Consensus 279 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~- 357 (405)
.-=...-.+-.+...=++.+.-++..|+++++-.+-+.........-.+....+...+.+. ....|..++|+++||+.
T Consensus 385 pn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdA 463 (728)
T KOG4535|consen 385 PNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDA 463 (728)
T ss_pred CCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHH
Confidence 0000000011111122334445788899999888876655544444445666777777776 77889999999999986
Q ss_pred ---C--CHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537 358 ---G--NREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 358 ---~--~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
+ +++..+.-+..-.+..++..-... +. +.++|+.+|..+|+|+
T Consensus 464 L~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~-~A-d~dkV~~navraLgnl 511 (728)
T KOG4535|consen 464 LIVNMPTPDSFQERFSGLLLLKMLRSAIEA-SA-DKDKVKSNAVRALGNL 511 (728)
T ss_pred HHcCCCCchHHHHHHHHHHHHHHHHHHHHh-hh-hhhhhhhHHHHHHhhH
Confidence 3 333233333344455555543221 11 2468999999999986
No 137
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.32 E-value=0.062 Score=49.17 Aligned_cols=240 Identities=12% Similarity=0.117 Sum_probs=158.1
Q ss_pred HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH-----HHHhC--CChHHHHHhhCCCCHHHHHHHHHHH
Q 015537 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK-----VVIDH--GAVPIFVKLLYSPSDDVREQAVWAL 183 (405)
Q Consensus 111 ~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~-----~~~~~--g~i~~L~~lL~~~~~~i~~~a~~~L 183 (405)
++...+.+..|+..|..-+ -+.+..++.+.+++.......+. .+... .++..|+..-. ++++.-.+...|
T Consensus 71 Ei~~~dll~~Li~~L~~L~-fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~ml 147 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLD-FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDML 147 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCC-CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHH
Confidence 4567788999999998887 78999999999999886554432 33322 34444444444 566666777777
Q ss_pred HHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhh----hhccHHHHHhhhcCCChHH
Q 015537 184 GNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ----VSPALPALAHLIHSNDDEV 259 (405)
Q Consensus 184 ~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~----~~~~l~~L~~ll~~~d~~v 259 (405)
...+.+.. +...++....+..+.+.+ ..++-++...|..++..+-..++...... ....+.....++.+++--+
T Consensus 148 Rec~k~e~-l~~~iL~~~~f~~ff~~~-~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 148 RECIKHES-LAKIILYSECFWKFFKYV-QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp HHHTTSHH-HHHHHHTSGGGGGHHHHT-TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred HHHHhhHH-HHHHHhCcHHHHHHHHHh-cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 77776654 556777777888888887 88899999999999998766543222222 2456677888999999999
Q ss_pred HHHHHHHHHHhccCChh---HHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh---hhHHHHHh--cCchHH
Q 015537 260 LTDACWALSYLSDGTND---KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD---MQTQCVIE--YQALPC 331 (405)
Q Consensus 260 ~~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~---~~~~~~~~--~g~l~~ 331 (405)
+..++..|+.+...... ...++-+..-+..++.+|++.+..++..|..++=-+++++. ...+.+.. ..++..
T Consensus 226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~f 305 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRF 305 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHH
T ss_pred ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHH
Confidence 99999999998754332 23444555778899999999999999999999988877543 22222222 235555
Q ss_pred HHHhhcCC-CchhHHHHHHHHHHHH
Q 015537 332 LLNLLSGN-YKKSIKKEACWTVSNI 355 (405)
Q Consensus 332 L~~ll~~~-~~~~v~~~a~~~L~nl 355 (405)
|.++..+. .+.....+=.+.+..|
T Consensus 306 l~~f~~~~~~D~qf~~EK~~li~~i 330 (335)
T PF08569_consen 306 LKDFHTDRTDDEQFEDEKAYLIKQI 330 (335)
T ss_dssp HHTTTTT--S-CHHHHHHHHHHHHH
T ss_pred HHhCCCCCCccccHHHHHHHHHHHH
Confidence 55555544 3555555555555444
No 138
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.32 E-value=0.011 Score=47.12 Aligned_cols=124 Identities=15% Similarity=0.173 Sum_probs=99.1
Q ss_pred hHHHHHhcCChHHHHHhhhCCCc-----hhHHHHHHHHHHHhhcCCCCCChhhh-hccHHHHHhhhcCC--ChHHHHHHH
Q 015537 193 CRDLVLSQGGLVPLLAQLNGQPK-----LSMLRNATWTLSNFCRGKPQPPFDQV-SPALPALAHLIHSN--DDEVLTDAC 264 (405)
Q Consensus 193 ~~~~i~~~~~i~~L~~~l~~~~~-----~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~--d~~v~~~a~ 264 (405)
+...++..+|+..|++++..+.. .++...++.++..|-++. ...+... ..++..++..++.. |..+...++
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence 45678889999999999966553 578888999999998873 3334333 55666777776543 689999999
Q ss_pred HHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh
Q 015537 265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (405)
Q Consensus 265 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 317 (405)
..|-++..+++...+.+-+.=-++.|+.+|+..++.++..++..+-.+..+.+
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 99999999888877777777778999999999999999999998888876554
No 139
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.31 E-value=0.0091 Score=60.05 Aligned_cols=267 Identities=13% Similarity=0.078 Sum_probs=175.2
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 015537 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (405)
Q Consensus 116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (405)
...+.+-++.+... +.++..++.-+++++..-.. .....+.++.+..+..++...+++.|...+.++...-..- +
T Consensus 237 elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~-~ 311 (759)
T KOG0211|consen 237 ELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD-D 311 (759)
T ss_pred HHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc-h
Confidence 33444455555555 88888888888888876333 5667789999999999999999999999999987432211 0
Q ss_pred HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC-C
Q 015537 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-T 274 (405)
Q Consensus 196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~ 274 (405)
. ......+.++... .+++..+...+....+.++..-.. ........+....++.....+.+..+..-...++.. +
T Consensus 312 d-~~~~~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~ 387 (759)
T KOG0211|consen 312 D-VVKSLTESLVQAV-EDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLN 387 (759)
T ss_pred h-hhhhhhHHHHHHh-cChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcC
Confidence 1 1223566777777 777888888877777777765422 222234566677777777777777766655555433 2
Q ss_pred hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (405)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n 354 (405)
.+....+....++|.+..+..+.+..++...+..+..+..-.+ .. -.-...+|.+...+++. .+.|+....|.++.
T Consensus 388 ~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~-~ti~~llp~~~~~l~de-~~~V~lnli~~ls~ 463 (759)
T KOG0211|consen 388 ASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KE-RTISELLPLLIGNLKDE-DPIVRLNLIDKLSL 463 (759)
T ss_pred cccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cC-cCccccChhhhhhcchh-hHHHHHhhHHHHHH
Confidence 1222335556678999999988898888877766666543221 00 01124778888888888 89999999998887
Q ss_pred HhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537 355 ITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCL 400 (405)
Q Consensus 355 l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~ 400 (405)
+-..+...-........+|.+..+-... ...+|.+..|.+-
T Consensus 464 ~~~v~~v~g~~~~s~slLp~i~el~~d~-----~wRvr~ail~~ip 504 (759)
T KOG0211|consen 464 LEEVNDVIGISTVSNSLLPAIVELAEDL-----LWRVRLAILEYIP 504 (759)
T ss_pred HHhccCcccchhhhhhhhhhhhhhccch-----hHHHHHHHHHHHH
Confidence 7654333334444566677776655433 2457766666553
No 140
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.30 E-value=0.17 Score=48.27 Aligned_cols=177 Identities=15% Similarity=0.129 Sum_probs=103.6
Q ss_pred CCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhh-cCCC----hHHHHHHHHHHHHhccCChhHHHHHHhcCC
Q 015537 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGV 286 (405)
Q Consensus 212 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 286 (405)
...++..+..++.+++.+....+... .....+..+..-+ ...+ +....-..|....+.-....... .+
T Consensus 200 ~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~ 272 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----EL 272 (415)
T ss_pred cCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HH
Confidence 34445556666666666655432222 2233444433333 1222 23334444555544322222222 23
Q ss_pred hHHHHHhcCCCCcchHHHHHHHHhHhhcCChh--------hHHHHHhc----CchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM--------QTQCVIEY----QALPCLLNLLSGNYKKSIKKEACWTVSN 354 (405)
Q Consensus 287 l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~--------~~~~~~~~----g~l~~L~~ll~~~~~~~v~~~a~~~L~n 354 (405)
+..|+.+|.+ +.+...+.+.++-+....+. ....+... .++|.|++-.... +...|..-..+|++
T Consensus 273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHH
Confidence 5778888876 66788888999888866232 12222222 3567777777766 55688888899999
Q ss_pred HhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 355 ITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 355 l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
+..+-|..+-.---..++|.|++.|...+ +.++..+.-.|..+.
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~-----~~v~~s~L~tL~~~l 393 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLPD-----ADVLLSSLETLKMIL 393 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHH
Confidence 99987765543334679999999996543 358888877776553
No 141
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.27 E-value=0.013 Score=48.78 Aligned_cols=93 Identities=25% Similarity=0.329 Sum_probs=75.7
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc
Q 015537 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294 (405)
Q Consensus 215 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL 294 (405)
++.++.+++-+++-||...| ..+.+.+|.+...|.++++.|+..|+.+|..|...+....+ ..++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHHH
Confidence 46788999999999988754 34467889999999999999999999999999865433222 22347888888
Q ss_pred CCCCcchHHHHHHHHhHhhcC
Q 015537 295 MHPSPSVLIPALRTVGNIVTG 315 (405)
Q Consensus 295 ~~~~~~v~~~a~~~l~nl~~~ 315 (405)
.+++++++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999865
No 142
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.27 E-value=0.005 Score=60.67 Aligned_cols=215 Identities=13% Similarity=0.065 Sum_probs=149.9
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
+++..++.+..-..+...+....+|.--.+...... ..+++.+...+.+.....-..+++.+++|+++.+...+
T Consensus 504 ~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r 577 (748)
T KOG4151|consen 504 GGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDR 577 (748)
T ss_pred cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhH
Confidence 456777777777777777777777762112221111 23466666666554423346889999999999888888
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
..+...-.++.+-.++-.+++.++..++..+.||....--+...+.+...=.++........++.....++.++..+...
T Consensus 578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv 657 (748)
T KOG4151|consen 578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSV 657 (748)
T ss_pred HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhc
Confidence 88888878888788888899999999999999999777666566666444445555543556666777777776655544
Q ss_pred C-CCCC-hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHh
Q 015537 233 K-PQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293 (405)
Q Consensus 233 ~-~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l 293 (405)
. .... ..........+..++.+.+++++...+..+.++.....+....+++...++.+..+
T Consensus 658 ~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 658 VENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGL 720 (748)
T ss_pred chhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence 3 1122 33445667788889999999999999999999777777777777766666655544
No 143
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.27 E-value=0.016 Score=58.35 Aligned_cols=299 Identities=11% Similarity=0.061 Sum_probs=195.3
Q ss_pred hhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCC
Q 015537 81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA 160 (405)
Q Consensus 81 ~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~ 160 (405)
..+..++.++..++.-+.++.+.- ......+++++.+.++...+. ..+++.|...+.++.......- =.....
T Consensus 245 lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~--d~~~~~ 317 (759)
T KOG0211|consen 245 LCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD--DVVKSL 317 (759)
T ss_pred hccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch--hhhhhh
Confidence 344456778887877777775432 236677889999999999888 7999999999988876422111 122256
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC--CCh
Q 015537 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ--PPF 238 (405)
Q Consensus 161 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~--~~~ 238 (405)
.+.++....+.+..++.........++..-.. .......+++...++ ++...+.+..++.-...++...+. ...
T Consensus 318 ~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~~~~~~ 393 (759)
T KOG0211|consen 318 TESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLNASCYPN 393 (759)
T ss_pred hHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcCcccccc
Confidence 78888888888888887777666666532111 111223456666776 666667777776666666665432 222
Q ss_pred hhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChh
Q 015537 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318 (405)
Q Consensus 239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~ 318 (405)
.....++|.+..+..+.+..++...+..+..+..-.+. ... -....|.++..+++..+.++....+.+..+-..++.
T Consensus 394 i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v 470 (759)
T KOG0211|consen 394 IPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERT-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDV 470 (759)
T ss_pred cchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcC-ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCc
Confidence 33356789999999888899988888777766533220 000 124567788888888999999988888777665554
Q ss_pred hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHH
Q 015537 319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWL 398 (405)
Q Consensus 319 ~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~a 398 (405)
..........+|.+..+-... ..+++.+..|.+--++.... ..+.+...-+.+..-+.+. -+.||+.|+..
T Consensus 471 ~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-----v~~Ir~~aa~~ 541 (759)
T KOG0211|consen 471 IGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-----VYSIREAAARN 541 (759)
T ss_pred ccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-----HHHHHHHHHHH
Confidence 444455667888888888888 89999999998888875221 2222222222222223222 35688887766
Q ss_pred Hhhh
Q 015537 399 CLVT 402 (405)
Q Consensus 399 l~n~ 402 (405)
+.-+
T Consensus 542 l~~l 545 (759)
T KOG0211|consen 542 LPAL 545 (759)
T ss_pred hHHH
Confidence 6543
No 144
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.048 Score=47.00 Aligned_cols=226 Identities=19% Similarity=0.261 Sum_probs=142.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCchhHH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
+..+.+....+..-..++.+.+|.++- ....+|.++..|...+ .|.++.+|+.+|+++...
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~------------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~~------ 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQ------------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDP------ 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhc------------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcch------
Confidence 445555555444445556666666552 2345899988886533 378999999999998732
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH----HHH--------HhcCChHHHHHhhhCCCchhH-HH
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR----DLV--------LSQGGLVPLLAQLNGQPKLSM-LR 220 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~----~~i--------~~~~~i~~L~~~l~~~~~~~~-~~ 220 (405)
+.++.+-++.+++-..|++.+..++..+-..+.... ... ...+.+..+-..|.+.+.+.. ++
T Consensus 100 -----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry 174 (289)
T KOG0567|consen 100 -----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY 174 (289)
T ss_pred -----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH
Confidence 457788888877888888888888777642111000 000 011123333333323333333 33
Q ss_pred HHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC--CCC
Q 015537 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPS 298 (405)
Q Consensus 221 ~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~ 298 (405)
.+.+.|.|+-.. ..+..+..-+..+..-++..+..+++.|-. .-.++.|.+.|. ..+
T Consensus 175 ~amF~LRn~g~E----------eaI~al~~~l~~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~ 233 (289)
T KOG0567|consen 175 RAMFYLRNIGTE----------EAINALIDGLADDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEH 233 (289)
T ss_pred hhhhHhhccCcH----------HHHHHHHHhcccchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcc
Confidence 444444444322 455667777777778889999999987742 223577777774 356
Q ss_pred cchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (405)
Q Consensus 299 ~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (405)
+-+|..|+.+||.|+. + ..++.|...+.++ .+-|++.+..+|.-+-
T Consensus 234 pMVRhEaAeALGaIa~--e---------~~~~vL~e~~~D~-~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 234 PMVRHEAAEALGAIAD--E---------DCVEVLKEYLGDE-ERVVRESCEVALDMLE 279 (289)
T ss_pred hHHHHHHHHHHHhhcC--H---------HHHHHHHHHcCCc-HHHHHHHHHHHHHHHH
Confidence 7899999999999973 2 2466788888888 8888888877776553
No 145
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.22 E-value=0.013 Score=48.70 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC-hHHHHHh
Q 015537 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG-LVPLLAQ 209 (405)
Q Consensus 131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~-i~~L~~~ 209 (405)
|.+|..++-+++-++..-+...+ ..++.+...|.++++.++.+|+.+|.+|...+. +.-.|. +..++..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence 78999999999999886444322 468899999999999999999999999985432 222333 3677888
Q ss_pred hhCCCchhHHHHHHHHHHHhhcCC
Q 015537 210 LNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 210 l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
+ .+++++++..|..++..+....
T Consensus 72 l-~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 72 L-VDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHhc
Confidence 8 8899999999999999998873
No 146
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.22 E-value=0.0012 Score=48.51 Aligned_cols=87 Identities=18% Similarity=0.115 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCC
Q 015537 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN 255 (405)
Q Consensus 176 ~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~ 255 (405)
+..++.+|+.++..-+..-.... ..++++++..+ .+++..++..++.+|.|++.............+++.|.+++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44566777776643332222222 23788999999 99999999999999999998765444556688889999999999
Q ss_pred ChHHHHHHH
Q 015537 256 DDEVLTDAC 264 (405)
Q Consensus 256 d~~v~~~a~ 264 (405)
|+.|+..|.
T Consensus 81 d~~Vr~~a~ 89 (97)
T PF12755_consen 81 DENVRSAAE 89 (97)
T ss_pred chhHHHHHH
Confidence 999887773
No 147
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.015 Score=57.01 Aligned_cols=233 Identities=15% Similarity=0.190 Sum_probs=144.0
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHH
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRD 195 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (405)
.+..+..+|.+++ +.+.++|+..|.+++.. |...+. +...++.++.. ++.++.-..+.-|..+.... .
T Consensus 244 ~i~~i~~lL~sts-saV~fEaa~tlv~lS~~-p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~----~ 312 (948)
T KOG1058|consen 244 YIRCIYNLLSSTS-SAVIFEAAGTLVTLSND-PTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALH----E 312 (948)
T ss_pred HHHHHHHHHhcCC-chhhhhhcceEEEccCC-HHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhh----H
Confidence 4667777888776 78888888888887765 332222 23344554433 34455544555555554211 1
Q ss_pred HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHh-hhcC------CChHHHHHHHHHHH
Q 015537 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH-LIHS------NDDEVLTDACWALS 268 (405)
Q Consensus 196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~-ll~~------~d~~v~~~a~~~l~ 268 (405)
.++ .|.+-.++..| ..+|.++++.++....-|..... +..++..|-. +.++ ++.+.+...+.++.
T Consensus 313 ~il-~~l~mDvLrvL-ss~dldvr~Ktldi~ldLvssrN------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih 384 (948)
T KOG1058|consen 313 KIL-QGLIMDVLRVL-SSPDLDVRSKTLDIALDLVSSRN------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIH 384 (948)
T ss_pred HHH-HHHHHHHHHHc-CcccccHHHHHHHHHHhhhhhcc------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHH
Confidence 222 23455667777 88999999999998888887632 1222333322 1111 23567888889999
Q ss_pred HhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHH
Q 015537 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA 348 (405)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a 348 (405)
+.+-..++... .+++.+++++++.++......+..+.......+..+..+ +..|+.-+..-...++.+.|
T Consensus 385 ~cav~Fp~~aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~i-----i~~l~~~~~~irS~ki~rga 454 (948)
T KOG1058|consen 385 ACAVKFPEVAA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASI-----IEKLLETFPQIRSSKICRGA 454 (948)
T ss_pred HHhhcChHHHH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHH-----HHHHHHhhhhhcccccchhH
Confidence 98877777655 446899999999888777777777766665555444433 33344433332245789999
Q ss_pred HHHHHHHhcCCHHHHH--HHH--HhCcHHHHHHH
Q 015537 349 CWTVSNITAGNREQIQ--VIM--HVHAFSIIVAF 378 (405)
Q Consensus 349 ~~~L~nl~~~~~~~~~--~l~--~~~~i~~L~~l 378 (405)
.|++|-.|.+..+... ..+ ..|=+|.+..=
T Consensus 455 lwi~GeYce~~~~i~~~~k~i~~slGEvp~~~se 488 (948)
T KOG1058|consen 455 LWILGEYCEGLSEIQSVIKIIRQSLGEVPIVCSE 488 (948)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccccceehHH
Confidence 9999999987653211 222 46777766544
No 148
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.019 Score=56.26 Aligned_cols=298 Identities=11% Similarity=0.083 Sum_probs=149.7
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc------
Q 015537 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS------ 149 (405)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~------ 149 (405)
..+-+.|+++++-++=..++.+.++- + .+-. ...+|.+...|.+.+ +-+|..|..++..|-....
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckLk--E-~ELl-----epl~p~IracleHrh-sYVRrNAilaifsIyk~~~~L~pDa 172 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKLK--E-PELL-----EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNFEHLIPDA 172 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhcC--c-HHHh-----hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhhhhhcCCh
Confidence 34455667777777777777777762 1 1111 234777777777777 6777777777776655411
Q ss_pred -hhHH--------------HHHh------CCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHH
Q 015537 150 -EHTK--------------VVID------HGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVP 205 (405)
Q Consensus 150 -~~~~--------------~~~~------~g~i~~L~~lL~~---~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~ 205 (405)
+... +++- ..++.+|.....+ -++.++-..+..+...|...|.-+ ...+..
T Consensus 173 peLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~ 247 (948)
T KOG1058|consen 173 PELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK-----ARYIRC 247 (948)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh-----hHHHHH
Confidence 1000 0000 0112222221111 123333333444444443333221 123455
Q ss_pred HHHhhhC----------------CCchhHHHHHHHHHHHhhcCCCCCCh----------------hhhhccHHHHHhhhc
Q 015537 206 LLAQLNG----------------QPKLSMLRNATWTLSNFCRGKPQPPF----------------DQVSPALPALAHLIH 253 (405)
Q Consensus 206 L~~~l~~----------------~~~~~~~~~a~~~l~~l~~~~~~~~~----------------~~~~~~l~~L~~ll~ 253 (405)
+..+|.. +.++...+.++.++..|....+.... ..+.+++--++.+|.
T Consensus 248 i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLs 327 (948)
T KOG1058|consen 248 IYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLS 327 (948)
T ss_pred HHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcC
Confidence 6666621 22344455555555544443321111 112334444566777
Q ss_pred CCChHHHHHHHHHHHHhccCC-hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHH
Q 015537 254 SNDDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL 332 (405)
Q Consensus 254 ~~d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L 332 (405)
++|-+++..++.....|+... -+.+-.+++..+...--. =...+...|..-+.+|...+..-++... .+++.|
T Consensus 328 s~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~aa-----tvV~~l 401 (948)
T KOG1058|consen 328 SPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEVAA-----TVVSLL 401 (948)
T ss_pred cccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHHHH-----HHHHHH
Confidence 788888888877766665432 222221222111111000 0112335677788888887766555444 568899
Q ss_pred HHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 333 ~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
++++.+. ++.........+.-.....|.. ...++..|++-+..-.. +++-+-|.|.+|-.|
T Consensus 402 l~fisD~-N~~aas~vl~FvrE~iek~p~L-----r~~ii~~l~~~~~~irS----~ki~rgalwi~GeYc 462 (948)
T KOG1058|consen 402 LDFISDS-NEAAASDVLMFVREAIEKFPNL-----RASIIEKLLETFPQIRS----SKICRGALWILGEYC 462 (948)
T ss_pred HHHhccC-CHHHHHHHHHHHHHHHHhCchH-----HHHHHHHHHHhhhhhcc----cccchhHHHHHHHHH
Confidence 9999988 6655444444444444344443 23445555555543322 257788999988766
No 149
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.13 E-value=0.012 Score=56.03 Aligned_cols=203 Identities=20% Similarity=0.257 Sum_probs=121.6
Q ss_pred HHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHh-cCCC---CHHHHHHHHHHHHHHhc-CC
Q 015537 75 LPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL-LRED---YPQLQFEAAWALTNIAS-GT 148 (405)
Q Consensus 75 l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL-~~~~---~~~~~~~a~~~L~ni~~-~~ 148 (405)
+..++....+ .++..+..+++.+.-++..- +..+ .. ..++..+..-+ .... .+..-...+|+...+.. ++
T Consensus 191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~--~~~~-~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 191 LQSLLNLALSSEDEFSRLAALQLLASLVNKW--PDDD-DL-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCC--CChh-hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 4455554443 45777777777777766331 1111 11 12233333333 1112 12333344455544433 32
Q ss_pred chhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-------------HHHHHhcCChHHHHHhhhCCCc
Q 015537 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-------------RDLVLSQGGLVPLLAQLNGQPK 215 (405)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~-------------~~~i~~~~~i~~L~~~l~~~~~ 215 (405)
+... ..+..|+.+|.+ +++...++.+++-+..+.+.+ ++.+... .++.|++.. +..+
T Consensus 267 ~~~~------~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~-~~~~ 336 (415)
T PF12460_consen 267 PLAT------ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGF-KEAD 336 (415)
T ss_pred chHH------HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHH-hhcC
Confidence 2211 246678888885 788899999999999884433 2222221 455666666 4445
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCh-hhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHH
Q 015537 216 LSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292 (405)
Q Consensus 216 ~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ 292 (405)
.+.+.+.+.+|+++..+-|.... .....++|.+++-|..+|++++..++.++..+....++....-++ .+++.|++
T Consensus 337 ~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 337 DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK 413 (415)
T ss_pred hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence 55888899999999997654332 334789999999999999999999999999998877655443222 34444443
No 150
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.12 E-value=0.013 Score=46.79 Aligned_cols=125 Identities=13% Similarity=0.110 Sum_probs=99.3
Q ss_pred hHHHHhcCcHHHHHHHhcCCCC-----HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHH
Q 015537 109 IEEVIRSGVVPRFVEFLLREDY-----PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVW 181 (405)
Q Consensus 109 ~~~~~~~g~l~~Li~lL~~~~~-----~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~i~~~a~~ 181 (405)
..+++..|++..|++++.++.. ..+...++.++..+..+. ......++...|..++.++..+ ++.+.+.|+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 4678899999999999988762 367777888888888763 3233455556778888888763 6899999999
Q ss_pred HHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC
Q 015537 182 ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235 (405)
Q Consensus 182 ~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~ 235 (405)
.|-++...++.....+.+.=.++.|+..| ..++.+++.++...+..|....+.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hL-q~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHL-QVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999998887777777666689999999 678999999999988888776543
No 151
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.041 Score=54.28 Aligned_cols=258 Identities=14% Similarity=0.113 Sum_probs=127.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH--
Q 015537 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD-- 195 (405)
Q Consensus 118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~-- 195 (405)
.+.+=.+|.+.. +.+..+|+.++.++...++.... .++..|-.++.++.+.+|-.|+.+|..+|...|..-.
T Consensus 247 ~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 247 FPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 344445555555 78999999999998765433222 2677888888999999999999999999976553211
Q ss_pred ------HHHhcC---ChHHHHHhhhCCCc---hhHHHHHHHHHHHhhcCCCCCChhh-----------hhccHHHHHhhh
Q 015537 196 ------LVLSQG---GLVPLLAQLNGQPK---LSMLRNATWTLSNFCRGKPQPPFDQ-----------VSPALPALAHLI 252 (405)
Q Consensus 196 ------~i~~~~---~i~~L~~~l~~~~~---~~~~~~a~~~l~~l~~~~~~~~~~~-----------~~~~l~~L~~ll 252 (405)
.+-..+ ....+..+|....+ ..+......++++++.+........ ....++.|..+|
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L 400 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML 400 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 110000 01222223311111 1223333344444443321111100 012223333333
Q ss_pred cC-CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHH
Q 015537 253 HS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC 331 (405)
Q Consensus 253 ~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~ 331 (405)
.. +.-+...+...++..+....++... -++..|..++.+.. ...-+.++++-+....+.. ......+..
T Consensus 401 r~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a---~~Pskyir~ 470 (865)
T KOG1078|consen 401 REEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKA---PNPSKYIRF 470 (865)
T ss_pred HhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCC---CCcchhhHH
Confidence 22 1233334444444433332222111 22333333332211 1222333333332211100 001123444
Q ss_pred HHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537 332 LLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 332 L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
+...+.-. +..+|.+|.-+|.++.++++... ..+.-.|.+++...++ .||..|.+++.+.
T Consensus 471 iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~Dd-----evRdrAtf~l~~l 530 (865)
T KOG1078|consen 471 IYNRVILE-NAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDD-----EVRDRATFYLKNL 530 (865)
T ss_pred Hhhhhhhh-hhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchH-----HHHHHHHHHHHHh
Confidence 45554445 67889999999999986544432 2344566667765544 4999999998764
No 152
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.038 Score=57.01 Aligned_cols=221 Identities=14% Similarity=0.092 Sum_probs=142.0
Q ss_pred cCCChHHHHHHHHHHHHhhccCCCCchHHHHhcC---cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc-hhHHHHHhC
Q 015537 83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG---VVPRFVEFLLREDYPQLQFEAAWALTNIASGTS-EHTKVVIDH 158 (405)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g---~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~-~~~~~~~~~ 158 (405)
++.+..+|..+...|..+++. +....+.... +...|.+-+++.. ...+...+.+|..|....+ +....+. .
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~---~s~~~~~~q~i~~I~n~L~ds~qs~~-~~~~~~rl~~L~~L~~~~~~e~~~~i~-k 738 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS---PSGEGLVEQRIDDIFNSLLDSFQSSS-SPAQASRLKCLKRLLKLLSAEHCDLIP-K 738 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC---CchhhHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccHHHHHHHH-H
Confidence 345789999999999999764 4444444332 3455555666666 6788888888888877655 3433333 2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC------ChHHHHHhhhCC--CchhHHHHH-HHHHHHh
Q 015537 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG------GLVPLLAQLNGQ--PKLSMLRNA-TWTLSNF 229 (405)
Q Consensus 159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~------~i~~L~~~l~~~--~~~~~~~~a-~~~l~~l 229 (405)
. |+-++-.++..+...++.+..+|..|+. .....+.| .+..++..+... .+..-.... +-++..+
T Consensus 739 ~-I~EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~i 812 (1176)
T KOG1248|consen 739 L-IPEVILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHI 812 (1176)
T ss_pred H-HHHHHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 3 4444444477788888888888888872 01111111 455555555322 222222222 4555555
Q ss_pred hcCC-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHH
Q 015537 230 CRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (405)
Q Consensus 230 ~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 308 (405)
.... .........+++..+..+|.++.++++..|+..+.-++...++..-.-....+++.+..+++...-.++..+-..
T Consensus 813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLL 892 (1176)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5544 455566668888888899999999999999999999988776643333333477888887777677777776666
Q ss_pred HhHhhc
Q 015537 309 VGNIVT 314 (405)
Q Consensus 309 l~nl~~ 314 (405)
+-.++.
T Consensus 893 lekLir 898 (1176)
T KOG1248|consen 893 LEKLIR 898 (1176)
T ss_pred HHHHHH
Confidence 666653
No 153
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.0086 Score=59.06 Aligned_cols=231 Identities=13% Similarity=0.065 Sum_probs=159.8
Q ss_pred HhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-HhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHH
Q 015537 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG-NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222 (405)
Q Consensus 144 i~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~-nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a 222 (405)
++......+...+..|+...|+++.....+..+.....+|. .+.-.+.. ....++++.+.+.++....-....
T Consensus 489 ~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~ 562 (748)
T KOG4151|consen 489 LAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEA 562 (748)
T ss_pred HhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHH
Confidence 33444556677888999999999999888888888888887 33221111 123566666666444444445677
Q ss_pred HHHHHHhhcCCCCCChhhh-hccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc-CChHHHHHhcCCCCcc
Q 015537 223 TWTLSNFCRGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMHPSPS 300 (405)
Q Consensus 223 ~~~l~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~ 300 (405)
+.++.||+..+........ ...++.+-.++..+++..+..++..+.||.-++.-....+.+. ..++.....+...+..
T Consensus 563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~ 642 (748)
T KOG4151|consen 563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK 642 (748)
T ss_pred HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence 7888888877633332232 4555666777778889999999999999997766555556663 5566666666666666
Q ss_pred hHHHHHHHHhHhhcCChhhHH-HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 015537 301 VLIPALRTVGNIVTGDDMQTQ-CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFF 379 (405)
Q Consensus 301 v~~~a~~~l~nl~~~~~~~~~-~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL 379 (405)
...+++.++..|.+....... ..-.....+.+..++.++ +..++.-....+.|+.....+....+++...++.+...-
T Consensus 643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~ 721 (748)
T KOG4151|consen 643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQ 721 (748)
T ss_pred HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHH
Confidence 677777777656654443333 223346788899999999 999999999999998777778777888888888877654
Q ss_pred hc
Q 015537 380 FM 381 (405)
Q Consensus 380 ~~ 381 (405)
.-
T Consensus 722 ~~ 723 (748)
T KOG4151|consen 722 KL 723 (748)
T ss_pred Hh
Confidence 43
No 154
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.02 E-value=0.0011 Score=50.10 Aligned_cols=73 Identities=23% Similarity=0.318 Sum_probs=61.6
Q ss_pred hccHHHHHhhhc-CCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537 242 SPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 242 ~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~ 314 (405)
..++..|+.+|. +.|+.+..-||.-|+.++...+.....+-+.|+-..++.++.+++++|+..|+.++..+..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 457788899984 4578899999999999999888888877777999999999999999999999999988764
No 155
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.00 E-value=0.097 Score=51.17 Aligned_cols=175 Identities=19% Similarity=0.157 Sum_probs=120.7
Q ss_pred hhcCCChHHHHHHHHHHH--HhhccCCCCchHHHHhcCcHHHHHHHhcC----CCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 81 GVWSNDSGVQYECTTQFR--KLLSIERSPPIEEVIRSGVVPRFVEFLLR----EDYPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 81 ~l~s~~~~~~~~a~~~l~--~l~s~~~~~~~~~~~~~g~l~~Li~lL~~----~~~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
.+...+++.-..|...++ .++-++ .-+-+.+-|...+...+ ++ +.++..|.-+|..+..-+.+...
T Consensus 861 ~IggtsEddf~da~~fikE~ElLyGe------ksvLs~F~pvVeE~csn~~~~sd-~~lq~aA~l~L~klMClS~~fc~- 932 (1128)
T COG5098 861 RIGGTSEDDFVDAFFFIKEKELLYGE------KSVLSNFKPVVEEGCSNSSRFSD-EELQVAAYLSLYKLMCLSFEFCS- 932 (1128)
T ss_pred hccCCCHHHHHHHHHHHHHHHHhhch------hHHHhhhhHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHhHHHHH-
Confidence 444445555556665553 233332 11122334444555544 34 89999999999987665444332
Q ss_pred HHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 155 VIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
..+|.|+..+. +++|.++.+|+-.+|.++..-....+. .-..|..-| .+.+..+++.+..++.+|.-..
T Consensus 933 ----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag 1002 (1128)
T COG5098 933 ----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG 1002 (1128)
T ss_pred ----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc
Confidence 46899999998 799999999999999887433222222 344667777 7889999999999999987653
Q ss_pred CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhH
Q 015537 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK 277 (405)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~ 277 (405)
...+.|-++.+..+|.++|.++..-|-..+..++..+...
T Consensus 1003 ----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~ 1042 (1128)
T COG5098 1003 ----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTM 1042 (1128)
T ss_pred ----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccch
Confidence 2345788999999999999998888888888887665543
No 156
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.98 E-value=0.064 Score=49.94 Aligned_cols=147 Identities=14% Similarity=0.202 Sum_probs=102.5
Q ss_pred ChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHH-HHHhccCChhHHHH
Q 015537 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWA-LSYLSDGTNDKIQA 280 (405)
Q Consensus 202 ~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~-l~~l~~~~~~~~~~ 280 (405)
++..++..|.++.+...+..++..|..+|++.+..-+....-++..+++.-.+.++++...|..+ +.-++.+.+...
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-- 407 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-- 407 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--
Confidence 55677778866689999999999999999998766666666666666666666666655555444 334455555432
Q ss_pred HHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 281 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
+..+..++...|......++.++..++..-....-..+-..+.|.+++...+. +..||+.|.++|..+..
T Consensus 408 ------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 408 ------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred ------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 22334444446666677778788888754432222223347899999999999 99999999999999864
No 157
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.96 E-value=0.0021 Score=47.24 Aligned_cols=92 Identities=17% Similarity=0.188 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCC
Q 015537 219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298 (405)
Q Consensus 219 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~ 298 (405)
++-++++|+..+.+-+.........++|.++..+.++|+.|+..||.+|.+++....+..-. .=..+++.|..++.+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCc
Confidence 44566777777776655556666889999999999999999999999999998665432211 12367788899999999
Q ss_pred cchHHHHHHHHhHh
Q 015537 299 PSVLIPALRTVGNI 312 (405)
Q Consensus 299 ~~v~~~a~~~l~nl 312 (405)
+.|+..| ..|-++
T Consensus 82 ~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAA-ELLDRL 94 (97)
T ss_pred hhHHHHH-HHHHHH
Confidence 9988765 444443
No 158
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.23 Score=50.54 Aligned_cols=225 Identities=15% Similarity=0.131 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHHhhccC-CCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHH
Q 015537 87 SGVQYECTTQFRKLLSIE-RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165 (405)
Q Consensus 87 ~~~~~~a~~~l~~l~s~~-~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~ 165 (405)
+....-|++.+..+.+.= +..+.....+.=+++.+...++++. -.+|..|||+++.+++.+-.... .-..++....
T Consensus 432 ~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d~~--~l~~ale~t~ 508 (1010)
T KOG1991|consen 432 PRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKDPN--NLSEALELTH 508 (1010)
T ss_pred hhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCChH--HHHHHHHHHH
Confidence 333444555554443211 1333334444445666777777776 78999999999999964222222 2224566667
Q ss_pred HhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHh--cCChHHHHHhhhCCCchhHHHHHHHHH-HHhhcCCCCCChhhh
Q 015537 166 KLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNATWTL-SNFCRGKPQPPFDQV 241 (405)
Q Consensus 166 ~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~L~~~l~~~~~~~~~~~a~~~l-~~l~~~~~~~~~~~~ 241 (405)
..|. +.+-.|+-.|+-+|..+..+.+.....+.. .+.++.|+++. +..+.+....+...+ ..++..-.+......
T Consensus 509 ~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~-ne~End~Lt~vme~iV~~fseElsPfA~eL~ 587 (1010)
T KOG1991|consen 509 NCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS-NEVENDDLTNVMEKIVCKFSEELSPFAVELC 587 (1010)
T ss_pred HHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 7776 667789999999999998777644332322 12345555555 333333444443333 333333233333344
Q ss_pred hccHHHHHhhhcC---CC---hHHHHHHHHHHHHhc------cCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHH
Q 015537 242 SPALPALAHLIHS---ND---DEVLTDACWALSYLS------DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (405)
Q Consensus 242 ~~~l~~L~~ll~~---~d---~~v~~~a~~~l~~l~------~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l 309 (405)
..+.....++++. .+ .+-...|..+|..+. +..++..+ -++..+++.+-..|.+.-.++-..++.++
T Consensus 588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~i~dfyeE~~ei~ 666 (1010)
T KOG1991|consen 588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLPVIGFILKNDITDFYEELLEIV 666 (1010)
T ss_pred HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5566666677763 11 222233333333222 11222211 22233445555555665566666677666
Q ss_pred hHhhcCC
Q 015537 310 GNIVTGD 316 (405)
Q Consensus 310 ~nl~~~~ 316 (405)
.++....
T Consensus 667 ~~~t~~~ 673 (1010)
T KOG1991|consen 667 SSLTFLS 673 (1010)
T ss_pred hhhhhhh
Confidence 6666544
No 159
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.95 E-value=0.15 Score=51.63 Aligned_cols=200 Identities=18% Similarity=0.200 Sum_probs=124.7
Q ss_pred HHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccH--HHHHhhhcCCCh-H
Q 015537 182 ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL--PALAHLIHSNDD-E 258 (405)
Q Consensus 182 ~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l--~~L~~ll~~~d~-~ 258 (405)
+|+++..+.+..-..+++.|++..+...+....+.++...+...+.+++...+..........+ ..+..++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 4557777777777888999999999999977788999999999999999875333222221222 233334444443 6
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcC
Q 015537 259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338 (405)
Q Consensus 259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~ 338 (405)
.-..++..++.+...+++....... +.+...-..++....... ...+...-+.+.+..++..
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r---------------~~~~~~l~e~i~~~~~~~---~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFR---------------NSVNELLVEAISRWLTSE---IRVINDRSFFPRILRILRL 635 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccch---------------HHHHHHHHHHhhccCccc---eeehhhhhcchhHHHHhcc
Confidence 7777777777776554431111110 111122222222222211 1112221222226666666
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 339 NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 339 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
+..+....-|.|++.+++..+++....+.+.|+++.+.++-.... . .+++.+|.-.+-+++
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSE-V---VDVKEEAVLVIESCE 696 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHH-H---HHHHHHHHHHhhccc
Confidence 657788899999999999988887778889999999988754443 2 468888877766654
No 160
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.055 Score=55.34 Aligned_cols=214 Identities=12% Similarity=0.092 Sum_probs=131.2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCCh
Q 015537 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238 (405)
Q Consensus 159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 238 (405)
+++..|+..+++.+..++..|+..++.++...|. .. ...++..+++++....+.....-+|-+|+.|+... -...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~L--ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--EL--ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--HH--HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence 5778888888899999999999999999987762 22 22366777777755557888899999999999874 1222
Q ss_pred hhhhccHHHHHhhhcCC--------ChHHHHHHHHHHHHhccCCh-hHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHH
Q 015537 239 DQVSPALPALAHLIHSN--------DDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (405)
Q Consensus 239 ~~~~~~l~~L~~ll~~~--------d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l 309 (405)
.....++|.+..-++.+ ...|+..||..+..++.... ...+.+++.=.-..|+..+-+++...|..|.-++
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 33456777777766433 35688888777777765432 2222233221222333444556666777776666
Q ss_pred hHhhcC--Ch-hhH----------------------HHHH-hcCchHHHHHh-----hcCCCchhHHHHHHHHHHHHhcC
Q 015537 310 GNIVTG--DD-MQT----------------------QCVI-EYQALPCLLNL-----LSGNYKKSIKKEACWTVSNITAG 358 (405)
Q Consensus 310 ~nl~~~--~~-~~~----------------------~~~~-~~g~l~~L~~l-----l~~~~~~~v~~~a~~~L~nl~~~ 358 (405)
...+-. +- ... ..+- -.|...++++- +.+- +..+|+.++|+|.++...
T Consensus 496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HW-d~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHW-DVKIRELAAYALHKLSLT 574 (1133)
T ss_pred HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHHh
Confidence 444311 11 000 0000 11333333332 2334 889999999999999765
Q ss_pred CHHHHHHHHHhCcHHHHHHHHhcc
Q 015537 359 NREQIQVIMHVHAFSIIVAFFFMF 382 (405)
Q Consensus 359 ~~~~~~~l~~~~~i~~L~~lL~~~ 382 (405)
.|+. ...+.+|+|++...+.
T Consensus 575 ~pk~----~a~~~L~~lld~~ls~ 594 (1133)
T KOG1943|consen 575 EPKY----LADYVLPPLLDSTLSK 594 (1133)
T ss_pred hHHh----hcccchhhhhhhhcCC
Confidence 5543 2346677776665444
No 161
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.93 E-value=0.042 Score=56.68 Aligned_cols=160 Identities=24% Similarity=0.257 Sum_probs=119.0
Q ss_pred CcHHHHHHHhcC----CCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC
Q 015537 116 GVVPRFVEFLLR----EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDS 190 (405)
Q Consensus 116 g~l~~Li~lL~~----~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~ 190 (405)
.+.|.+++..+. ++ |++|..|.-+|+.+..-+.+... ..+|.|+..+. ++++.++.+++-++|-++-.-
T Consensus 919 ~f~piv~e~c~n~~~~sd-p~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSD-PELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHhcCCCcCCC-HHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 357777777753 34 89999999999998886555443 45889999997 789999999999999998655
Q ss_pred hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHh
Q 015537 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270 (405)
Q Consensus 191 ~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l 270 (405)
|..-+. .-+.|...| .+.++.+++.|..++++|..++ ...+.|.++-+..++.++++.|..-|=..+..|
T Consensus 993 pnlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 993 PNLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred ccccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 533221 345666667 8899999999999999998763 455689999999999999998887777666666
Q ss_pred ccCChhHHHHHHhcCChHHHHHhcCCC
Q 015537 271 SDGTNDKIQAVIEAGVFPRLAEFLMHP 297 (405)
Q Consensus 271 ~~~~~~~~~~~~~~~~l~~L~~lL~~~ 297 (405)
+...+..+ +++|-++.-|+++
T Consensus 1063 s~k~n~iy------nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1063 SSKGNTIY------NLLPDILSRLSNG 1083 (1251)
T ss_pred hhcccchh------hhchHHHHhhccC
Confidence 65443221 3455555555544
No 162
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.93 E-value=0.0091 Score=59.73 Aligned_cols=186 Identities=17% Similarity=0.116 Sum_probs=125.9
Q ss_pred HHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC---------C----ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHh
Q 015537 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ---------P----PFDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270 (405)
Q Consensus 204 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~---------~----~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l 270 (405)
..++.+| + ++++-..+..++.-+..+.+. . .......++|.++..+++.+..++..-+.+|+++
T Consensus 818 ~klld~L-s--~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshV 894 (1030)
T KOG1967|consen 818 EKLLDLL-S--GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHV 894 (1030)
T ss_pred HHHHHhc-C--CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHH
Confidence 4556666 2 344555555666655544311 1 1123467899999999877788888888999998
Q ss_pred ccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCc--hhHHHHH
Q 015537 271 SDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK--KSIKKEA 348 (405)
Q Consensus 271 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~--~~v~~~a 348 (405)
..+-+...-.-.-..++|.|++.|+-+|..++..++.+|..+..........-++ -++|.+..+-.+..+ ..+|..|
T Consensus 895 l~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~A 973 (1030)
T KOG1967|consen 895 LTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDA 973 (1030)
T ss_pred HhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHH
Confidence 8766653211122367889999999999999999999999888655533332222 478888888777621 5788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHH
Q 015537 349 CWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWL 398 (405)
Q Consensus 349 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~a 398 (405)
.-+|..++..-|...-.-..-.++..|+..|.... ..||++|.-+
T Consensus 974 LqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK-----RlVR~eAv~t 1018 (1030)
T KOG1967|consen 974 LQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK-----RLVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHhccCCCcccccccHHHHHHhhhccCcHH-----HHHHHHHHHH
Confidence 99999998854443333445677788888886542 3699999754
No 163
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.92 E-value=0.096 Score=45.65 Aligned_cols=102 Identities=15% Similarity=0.082 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHh
Q 015537 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209 (405)
Q Consensus 131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~ 209 (405)
+.....|+.+|.-++--.+..+..+.....+..|+.+|.. ..+.++..++.+|..+..+++.+...+-+.+++..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 3456668889988888889999999999999999999954 678999999999999999999999999999999999999
Q ss_pred hhCC-CchhHHHHHHHHHHHhhcC
Q 015537 210 LNGQ-PKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 210 l~~~-~~~~~~~~a~~~l~~l~~~ 232 (405)
+... .+.+++-.++.+|+-....
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHcc
Confidence 9533 3778877777777655443
No 164
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.033 Score=55.48 Aligned_cols=221 Identities=12% Similarity=0.109 Sum_probs=137.3
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhc
Q 015537 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP 243 (405)
Q Consensus 164 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 243 (405)
.+..+.++-+.++-.++..|..++.... -...+...+++...++.+ .+.|+-+.-++...+..||.--| ..
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~-------e~ 802 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYP-------ED 802 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcc-------hh
Confidence 4445555667789999999999987553 335566778888999999 88899999999999999998633 45
Q ss_pred cHHHHHhh-hcCCC---hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhh
Q 015537 244 ALPALAHL-IHSND---DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (405)
Q Consensus 244 ~l~~L~~l-l~~~d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 319 (405)
++|-+... .+..+ ++.+..+-.++.+++..-.+......+ -++..++..+.+++...|..++..+|++|.-.+.+
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 66766663 32221 222222224455544332222222221 34456666667777788999999999999755533
Q ss_pred HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhcccccchhhhHHHHHH
Q 015537 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH---VHAFSIIVAFFFMFLHFFFGAIIYKLAI 396 (405)
Q Consensus 320 ~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~lL~~~~~~~~~~~vr~~A~ 396 (405)
....+ ...+..++.+...+....+|+.|...+..+-.|..+..-.+.. .+....+..+.....+. .+|.+|+
T Consensus 882 vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd----~~klhaq 956 (982)
T KOG4653|consen 882 VSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDD----GLKLHAQ 956 (982)
T ss_pred hhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchh----HHHHHHH
Confidence 32211 1245556666665547899999999999998765543333332 23333444444333333 4666666
Q ss_pred HHH
Q 015537 397 WLC 399 (405)
Q Consensus 397 ~al 399 (405)
.++
T Consensus 957 l~l 959 (982)
T KOG4653|consen 957 LCL 959 (982)
T ss_pred HHH
Confidence 554
No 165
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.033 Score=58.84 Aligned_cols=220 Identities=18% Similarity=0.201 Sum_probs=137.0
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 015537 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (405)
Q Consensus 116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (405)
..+-.|+++-++.-...-+.-|+.-++.|+...-+..+.... ..||.|.++=.+++..|+.....+...|..|+...-+
T Consensus 956 dLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~-kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd 1034 (1702)
T KOG0915|consen 956 DLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLK-KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVD 1034 (1702)
T ss_pred HHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHH-HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHH
Confidence 346667777766554566888888888888864333332322 5789999988999999998777777777777665555
Q ss_pred HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChh-hhhccHHHHHhhhcCCChHHHHH---HHHHHHHhc
Q 015537 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD-QVSPALPALAHLIHSNDDEVLTD---ACWALSYLS 271 (405)
Q Consensus 196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~l~~L~~ll~~~d~~v~~~---a~~~l~~l~ 271 (405)
..+. .+++.|+.-+ .+..-.+++.+|.+|..|.++.|..... .+..+...+...+.+=.+.|+.. ++.+|+.++
T Consensus 1035 ~y~n-eIl~eLL~~l-t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1035 EYLN-EILDELLVNL-TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHH-HHHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443 3677777777 7778899999999999999996543332 22333334444443323556655 456666665
Q ss_pred cCChhHHHHHHhcCChHHHHHhc-----CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC
Q 015537 272 DGTNDKIQAVIEAGVFPRLAEFL-----MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN 339 (405)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~L~~lL-----~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~ 339 (405)
-...+...-.-...++..++++| -+.-++++..++.++..++.+........ -..++|.|+..+..-
T Consensus 1113 vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~~~s~l 1184 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLNAYSEL 1184 (1702)
T ss_pred hhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHHHcccc
Confidence 32111111011112233344433 24557899999999999987665433322 235677777777655
No 166
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.53 Score=50.38 Aligned_cols=297 Identities=14% Similarity=0.157 Sum_probs=165.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
||.|.+.=..+++.+|..-...+.-+.... ...++... ..++.-|+.-|.+.. ..+|+.++.+|..+..+.+.. .
T Consensus 1000 IPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~-k~~vd~y~-neIl~eLL~~lt~ke-wRVReasclAL~dLl~g~~~~--~ 1074 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQDAMTSIWNALITDS-KKVVDEYL-NEILDELLVNLTSKE-WRVREASCLALADLLQGRPFD--Q 1074 (1702)
T ss_pred hHHHhhhccCCcHHHHHHHHHHHHHhccCh-HHHHHHHH-HHHHHHHHHhccchh-HHHHHHHHHHHHHHHcCCChH--H
Confidence 566666666677778776666665554322 33333332 345666777777777 799999999999999984432 2
Q ss_pred HHhC--CChHHHHHhhCCCCHHHHH---HHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh----CCCchhHHHHHHHH
Q 015537 155 VIDH--GAVPIFVKLLYSPSDDVRE---QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----GQPKLSMLRNATWT 225 (405)
Q Consensus 155 ~~~~--g~i~~L~~lL~~~~~~i~~---~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~----~~~~~~~~~~a~~~ 225 (405)
+.+. .+-..+.+.+.+-...+|+ .++.+|+.++.-.-....-.....++..++..|. -++-.++++.++.+
T Consensus 1075 ~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~t 1154 (1702)
T KOG0915|consen 1075 VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGT 1154 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHH
Confidence 2221 3445555666654445554 4566677766211101111111223444444442 24568899999999
Q ss_pred HHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHh------------ccCCh--hHHHHH-------Hhc
Q 015537 226 LSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL------------SDGTN--DKIQAV-------IEA 284 (405)
Q Consensus 226 l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l------------~~~~~--~~~~~~-------~~~ 284 (405)
+.-|+...+.........++|.|......-.+.|..+...-+.+. +.+++ +.+... +=.
T Consensus 1155 l~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLe 1234 (1702)
T KOG0915|consen 1155 LMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLE 1234 (1702)
T ss_pred HHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHH
Confidence 999999876655555567777777776655555544322111111 11111 001111 111
Q ss_pred CChHHHHHhcCCC-CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHH
Q 015537 285 GVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQ 362 (405)
Q Consensus 285 ~~l~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~ 362 (405)
..+|.+.+++... ....+..+...+.-++..-..... ......+..+...+.+. ++.+++.-+.+.+.++. .++++
T Consensus 1235 elip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt-P~sgKll~al~~g~~dR-Nesv~kafAsAmG~L~k~Ss~dq 1312 (1702)
T KOG0915|consen 1235 ELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT-PYSGKLLRALFPGAKDR-NESVRKAFASAMGYLAKFSSPDQ 1312 (1702)
T ss_pred HHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC-cchhHHHHHHhhccccc-cHHHHHHHHHHHHHHHhcCChHH
Confidence 3456666666433 223344444444444432110000 01113667777777777 89999999999999986 56778
Q ss_pred HHHHHHhCcHHHHHHHHhcc
Q 015537 363 IQVIMHVHAFSIIVAFFFMF 382 (405)
Q Consensus 363 ~~~l~~~~~i~~L~~lL~~~ 382 (405)
.+.+++. .+..++...
T Consensus 1313 ~qKLie~----~l~~~l~k~ 1328 (1702)
T KOG0915|consen 1313 MQKLIET----LLADLLGKD 1328 (1702)
T ss_pred HHHHHHH----HHHHHhccC
Confidence 8877653 444444443
No 167
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.054 Score=53.52 Aligned_cols=259 Identities=16% Similarity=0.158 Sum_probs=145.9
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH---
Q 015537 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT--- 152 (405)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~--- 152 (405)
+-+=.++.+....+..+|+..+..+-. ...+.+.. .+..|--+++++. +.+|+.|.++|..++...|..-
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~----~~~r~l~p--avs~Lq~flssp~-~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPN----TNSRELAP--AVSVLQLFLSSPK-VALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccc----cCHhhcch--HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhCCcccccc
Confidence 344446667788999999999888742 22233222 5777778888888 8999999999999988655421
Q ss_pred -----HHHHhCC---ChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChh-----hHHH-----HHhcCChHHHHHhh
Q 015537 153 -----KVVIDHG---AVPIFVKLLYSPS----DDVREQAVWALGNIAGDSPR-----CRDL-----VLSQGGLVPLLAQL 210 (405)
Q Consensus 153 -----~~~~~~g---~i~~L~~lL~~~~----~~i~~~a~~~L~nl~~~~~~-----~~~~-----i~~~~~i~~L~~~l 210 (405)
..+-+.+ ....+..+|+... ..+..+......+++.+... .+.. ....+.+..|.++|
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L 400 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML 400 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 1111111 2233444554432 23444444444444432210 0000 01233445555556
Q ss_pred hCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHH
Q 015537 211 NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290 (405)
Q Consensus 211 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L 290 (405)
.+.+..+..+....++..+....|..... ++..|...+.+ -+....+...|..+....+.. ......+..+
T Consensus 401 r~eGg~e~K~aivd~Ii~iie~~pdsKe~----~L~~LCefIED--ce~~~i~~rILhlLG~EgP~a---~~Pskyir~i 471 (865)
T KOG1078|consen 401 REEGGFEFKRAIVDAIIDIIEENPDSKER----GLEHLCEFIED--CEFTQIAVRILHLLGKEGPKA---PNPSKYIRFI 471 (865)
T ss_pred HhccCchHHHHHHHHHHHHHHhCcchhhH----HHHHHHHHHHh--ccchHHHHHHHHHHhccCCCC---CCcchhhHHH
Confidence 55556666777777777666654433332 33334443322 122223333333332221100 0011223344
Q ss_pred HHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537 291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (405)
Q Consensus 291 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (405)
...+.-.+..++..|+.++.++..+++.... .+...+.+++.+. +..+|..|.+.|.++-
T Consensus 472 yNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~-DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 472 YNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDS-DDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCc-hHHHHHHHHHHHHHhh
Confidence 4444445677899999999999866654333 4566788888888 9999999999999996
No 168
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.82 E-value=0.45 Score=48.66 Aligned_cols=254 Identities=14% Similarity=0.165 Sum_probs=149.2
Q ss_pred cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC
Q 015537 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGD 189 (405)
Q Consensus 115 ~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~i~~~a~~~L~nl~~~ 189 (405)
....+.+++-|.++...+.-.+-...++++ +.+.|++..++.++.+ ....+....+..|...+.-
T Consensus 83 geAtE~~v~~l~~~~~~~~d~e~~~~~~~v----------~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv 152 (802)
T PF13764_consen 83 GEATEEFVESLEDDSEEEEDPEQEFKIASV----------LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV 152 (802)
T ss_pred CccchhhHhhccCccccccCHHHHHHHHHH----------hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh
Confidence 345667777776533122222222233332 2345889999998876 3345666666666665544
Q ss_pred ChhhHHHHHhcCChHHHHHhhh---CCCc----hhHHHHHHHHHHHhhcCCCCCChh-------------hhhccHHHHH
Q 015537 190 SPRCRDLVLSQGGLVPLLAQLN---GQPK----LSMLRNATWTLSNFCRGKPQPPFD-------------QVSPALPALA 249 (405)
Q Consensus 190 ~~~~~~~i~~~~~i~~L~~~l~---~~~~----~~~~~~a~~~l~~l~~~~~~~~~~-------------~~~~~l~~L~ 249 (405)
+.+|..+++.|+++.|+..+. .... ..+....+..+-.+.......... ....-+..++
T Consensus 153 -~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL 231 (802)
T PF13764_consen 153 -KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLL 231 (802)
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHH
Confidence 668999999999999999884 2322 555555555555444332110000 1123355566
Q ss_pred hhhcC----CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC--CcchHHHHHHHHhHhhcCC------h
Q 015537 250 HLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGD------D 317 (405)
Q Consensus 250 ~ll~~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~------~ 317 (405)
..+.+ .++.+....++.|.+|+.++.+..+.+++. +...+++=..+ ...--...+.++..++.+- .
T Consensus 232 ~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~ 309 (802)
T PF13764_consen 232 ERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGN 309 (802)
T ss_pred HHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchH
Confidence 65554 468999999999999999999887777643 22222221111 1111123355566666432 3
Q ss_pred hhHHHHHhcCchHHHHHhhcCCC-------chh--------HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcc
Q 015537 318 MQTQCVIEYQALPCLLNLLSGNY-------KKS--------IKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMF 382 (405)
Q Consensus 318 ~~~~~~~~~g~l~~L~~ll~~~~-------~~~--------v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~ 382 (405)
...+.+++.|++...+..|.... ++. --..+...|.-++.++.. .|.++..+++ ++++.|..-
T Consensus 310 ~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~-tQ~~~~~~~l-~~lH~LEqv 387 (802)
T PF13764_consen 310 RLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLARGHEP-TQLLIAEQLL-PLLHRLEQV 387 (802)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHhcCHH-HHHHHHhhHH-HHHHHhhcC
Confidence 56788899999998888776431 111 224467777778777665 4566777888 455555544
Q ss_pred c
Q 015537 383 L 383 (405)
Q Consensus 383 ~ 383 (405)
.
T Consensus 388 s 388 (802)
T PF13764_consen 388 S 388 (802)
T ss_pred C
Confidence 3
No 169
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.76 E-value=0.15 Score=48.86 Aligned_cols=208 Identities=14% Similarity=0.129 Sum_probs=120.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 015537 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197 (405)
Q Consensus 118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i 197 (405)
.|.|-..|++.. +.+..++++.++.++..+ .-..+++ ..+..|-.+|.++....+-.|+.+|..|+...|.- +
T Consensus 266 rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k---v 338 (898)
T COG5240 266 RPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK---V 338 (898)
T ss_pred HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce---e
Confidence 455555566555 789999999999987753 1122222 35677888899999999999999999999877742 1
Q ss_pred HhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC---CChHHHHHHHHHHHHhccCC
Q 015537 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS---NDDEVLTDACWALSYLSDGT 274 (405)
Q Consensus 198 ~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~---~d~~v~~~a~~~l~~l~~~~ 274 (405)
.- .-+.+-.++ .+.+..+-..| +..|......... ..++..+..++++ +=.-+..+|++.|+.+-
T Consensus 339 ~v--cN~evEsLI-sd~Nr~IstyA---ITtLLKTGt~e~i---drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F--- 406 (898)
T COG5240 339 SV--CNKEVESLI-SDENRTISTYA---ITTLLKTGTEETI---DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF--- 406 (898)
T ss_pred ee--cChhHHHHh-hcccccchHHH---HHHHHHcCchhhH---HHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC---
Confidence 11 112333344 55555554444 4444433222222 2333333444432 22445566666665543
Q ss_pred hhHHHHHHhcCChHHHHHhc-CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 015537 275 NDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (405)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~ 353 (405)
+..... .+..|...| +.+..+.+..++.+|+.+....++-.+ .+++.|..++.+. +..+-+..+|+
T Consensus 407 p~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDc---ey~~I~vrIL~ 473 (898)
T COG5240 407 PSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDC---EYHQITVRILG 473 (898)
T ss_pred cHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhc---chhHHHHHHHH
Confidence 322221 234555554 345567888888888888877665544 3466677777766 23334455555
Q ss_pred HHhc
Q 015537 354 NITA 357 (405)
Q Consensus 354 nl~~ 357 (405)
-+..
T Consensus 474 iLG~ 477 (898)
T COG5240 474 ILGR 477 (898)
T ss_pred Hhcc
Confidence 5544
No 170
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.051 Score=54.23 Aligned_cols=223 Identities=11% Similarity=0.073 Sum_probs=141.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 015537 122 VEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG 201 (405)
Q Consensus 122 i~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~ 201 (405)
+..+.++. +.++..++.-|..+.... +....+...+++...+..|++.++-+--.|+..+..+|.-.+ ..
T Consensus 733 i~sl~d~q-vpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~ 802 (982)
T KOG4653|consen 733 ISSLHDDQ-VPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------ED 802 (982)
T ss_pred HHHhcCCc-ccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hh
Confidence 33444444 678999999999999864 445556666899999999999999999999998888885433 23
Q ss_pred ChHHHHHhhhCCC---chhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHH
Q 015537 202 GLVPLLAQLNGQP---KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI 278 (405)
Q Consensus 202 ~i~~L~~~l~~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~ 278 (405)
+++.+.....+.+ .++.+-.+-.++.++.+.-..........++......+.++|...+..++..++.++.......
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 5566666442221 2344445556777776654444444445666777777888888889999999999985433222
Q ss_pred HHHHhcCChHHHHHhcC-CCCcchHHHHHHHHhHhhcCChhhHHHHH---hcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537 279 QAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVI---EYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (405)
Q Consensus 279 ~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~---~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n 354 (405)
.-.+ ..++..++.+.. +++.-+|.+|+..+..+..|.....-.+. .......+........+..++..|+.++--
T Consensus 883 sd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 883 SDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred hHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 1111 122344444443 55678999999999999877653332222 122334444444444355566666655543
Q ss_pred H
Q 015537 355 I 355 (405)
Q Consensus 355 l 355 (405)
+
T Consensus 962 i 962 (982)
T KOG4653|consen 962 I 962 (982)
T ss_pred H
Confidence 3
No 171
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.031 Score=53.22 Aligned_cols=97 Identities=19% Similarity=0.300 Sum_probs=60.2
Q ss_pred HHHhhhcCCChHHHHHHHHHHH--HhccCChhHHHHHHhcCChHHHHHh-cCCCCcchHHHHHHHHhHhhcCChhhHHHH
Q 015537 247 ALAHLIHSNDDEVLTDACWALS--YLSDGTNDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCV 323 (405)
Q Consensus 247 ~L~~ll~~~d~~v~~~a~~~l~--~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 323 (405)
.+.+++.+.|+-.+.....+++ +.-.++ .|++..++.. .++.+.+|+..|+-+||-+|+.+.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------ 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------ 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeEecCc------
Confidence 4556666666666665554443 222222 1344555555 466677788888888887776543
Q ss_pred HhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015537 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (405)
Q Consensus 324 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (405)
..++..+.+|..++++.||-..+.+|+-.|+++-.
T Consensus 585 ---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~ 619 (926)
T COG5116 585 ---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD 619 (926)
T ss_pred ---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc
Confidence 34555666676666788888888888877775444
No 172
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.68 E-value=0.14 Score=46.49 Aligned_cols=189 Identities=17% Similarity=0.155 Sum_probs=114.7
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC--CCCCCh
Q 015537 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG--KPQPPF 238 (405)
Q Consensus 163 ~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~--~~~~~~ 238 (405)
..+..+.......|+.++..|.++...... .+.+.. .-.+..+.+.+.+.. .+-+..++.++.-++-. ......
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCccHH
Confidence 344444556678888888888888754432 122221 113556666664433 34455666767766655 334455
Q ss_pred hhhhccHHHHHhhhcCCC--hHHHHHHHHHHHHhc---cCChhHHHHHHhcCChH--HHHHhcCC----------CCcch
Q 015537 239 DQVSPALPALAHLIHSND--DEVLTDACWALSYLS---DGTNDKIQAVIEAGVFP--RLAEFLMH----------PSPSV 301 (405)
Q Consensus 239 ~~~~~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~---~~~~~~~~~~~~~~~l~--~L~~lL~~----------~~~~v 301 (405)
.....+.|.|...+.... +.++..++.+|+-++ ..+.+.+...++ .+. .....++. +++.+
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 666788899988887653 456666666665543 333333331111 223 11122221 23568
Q ss_pred HHHHHHHHhHhhcCChh-hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 302 LIPALRTVGNIVTGDDM-QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 302 ~~~a~~~l~nl~~~~~~-~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
...|+.+.+-+.+.-+. .....+ ...++.|..+|.++ +..||..|.-+|.-|..
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 88999999888875554 222222 34699999999999 99999999999888854
No 173
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.67 E-value=0.02 Score=47.99 Aligned_cols=147 Identities=14% Similarity=0.173 Sum_probs=89.9
Q ss_pred HHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhhcCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHh
Q 015537 35 EIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR 114 (405)
Q Consensus 35 ~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~ 114 (405)
++=..+|-+++.+.+......... +. ..............++..+.+..... ..+..|+..+.......++.|++
T Consensus 31 ~~~~ekKw~li~~~~~~~~~~~~~-~~--~~~~~~~~~~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~ 105 (187)
T PF06371_consen 31 NLPPEKKWQLIQQHRQKQAKHSSS-SS--KSKSKASAKSSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLE 105 (187)
T ss_dssp TS-HHHHHHHHHHHHHH--------------------CHHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-H
T ss_pred CCCHHHHHHHHHhHHHhccccchh-hh--hhhhhhhhhhhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhcc
Confidence 344566667776666543222200 00 00000011123467788887765432 45556666665442344678999
Q ss_pred cCcHHHHHHHhcCC--------CCHHHHHHHHHHHHHHhcCCchhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 015537 115 SGVVPRFVEFLLRE--------DYPQLQFEAAWALTNIASGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGN 185 (405)
Q Consensus 115 ~g~l~~Li~lL~~~--------~~~~~~~~a~~~L~ni~~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~n 185 (405)
.|++..|+++|..- ....+..+++.||..|... ......++. .+++..|+..|.+++..++..++..|+-
T Consensus 106 ~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~ 184 (187)
T PF06371_consen 106 LGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT-KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAA 184 (187)
T ss_dssp HHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS-HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc-HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 99999999988531 2257899999999999887 455666665 5899999999999999999999999998
Q ss_pred hh
Q 015537 186 IA 187 (405)
Q Consensus 186 l~ 187 (405)
+|
T Consensus 185 lc 186 (187)
T PF06371_consen 185 LC 186 (187)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 174
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.64 E-value=0.0047 Score=46.66 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=61.0
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~ 187 (405)
++..|+++|..++++....-|+.=|+.++...|..+..+-+.|+-..+..++.+++++|+.+|+.++..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 58899999965544888888999999999988999988888899999999999999999999999998775
No 175
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.56 E-value=0.28 Score=44.54 Aligned_cols=171 Identities=16% Similarity=0.124 Sum_probs=111.2
Q ss_pred CcHHHHH-HHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CChhh
Q 015537 116 GVVPRFV-EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG-DSPRC 193 (405)
Q Consensus 116 g~l~~Li-~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~-~~~~~ 193 (405)
+++..|+ .-+++.+ +.+|..|+.|||-.+--+.+... ..++.+...++.+++.++..|+.++..+.. ++...
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4565555 6677777 89999999999999887554332 236677777777799999999999999873 22211
Q ss_pred HHHHH-------hcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC----CChHHHHH
Q 015537 194 RDLVL-------SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----NDDEVLTD 262 (405)
Q Consensus 194 ~~~i~-------~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~----~d~~v~~~ 262 (405)
-+... ....+..+.+.+ .+.+++++..++..++.|.-...-.. ...++..|+-+.-+ ++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 11111 123455666666 56688999999999999877652222 22344443333222 34566666
Q ss_pred HHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC
Q 015537 263 ACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297 (405)
Q Consensus 263 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 297 (405)
....+-..+..+..+ +..+...+++.+..+....
T Consensus 176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 666666677666655 4566667777777777544
No 176
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=96.53 E-value=0.65 Score=43.59 Aligned_cols=265 Identities=14% Similarity=0.130 Sum_probs=146.8
Q ss_pred cCCChHHHHHHHHHHHHhhccCCCCc-hHHHHhcCcHHHHHHHhc----C------CCCHHHHHHHHHHHHHHhcCCchh
Q 015537 83 WSNDSGVQYECTTQFRKLLSIERSPP-IEEVIRSGVVPRFVEFLL----R------EDYPQLQFEAAWALTNIASGTSEH 151 (405)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~s~~~~~~-~~~~~~~g~l~~Li~lL~----~------~~~~~~~~~a~~~L~ni~~~~~~~ 151 (405)
.+.+...+..|...|.+.+...++.+ .+.+.+. ++.|+++++ + +.+..+..+|+.+|+.+..+ ++.
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k--~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i 79 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDK--MSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEI 79 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHH--HHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHH
Confidence 34566777777777777766553333 3333322 455555443 1 11367889999999998876 444
Q ss_pred HHHHHhCC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh---C-CCchhHHHHH
Q 015537 152 TKVVIDHG---AVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---G-QPKLSMLRNA 222 (405)
Q Consensus 152 ~~~~~~~g---~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~---~-~~~~~~~~~a 222 (405)
...+-+.- ++...+..+.+ .+..+....+|+|..=--. ..++....+..++..+. + -+...+....
T Consensus 80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~er 154 (372)
T PF12231_consen 80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVERLLAALHNIKNRFPSKSIISER 154 (372)
T ss_pred HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHHHHHHHHHhhccCCchhHHHHH
Confidence 43333221 34555666644 3556777888887753211 12233334444444432 2 4567788888
Q ss_pred HHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc--CC-hhHHH---HHHhc----C-----Ch
Q 015537 223 TWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD--GT-NDKIQ---AVIEA----G-----VF 287 (405)
Q Consensus 223 ~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~--~~-~~~~~---~~~~~----~-----~l 287 (405)
+.++.+|....|..-......-+|.++..+-+....++..|...+..+.. +. ..... ...+. + +.
T Consensus 155 L~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 234 (372)
T PF12231_consen 155 LNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYC 234 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHH
Confidence 88999888876654444445567777777667777777765554444321 11 11111 11111 2 23
Q ss_pred HHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (405)
Q Consensus 288 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (405)
+.|..++.+.+......-+|..--..-++......-.-...+......+.++ ++.+|.+|..+-..++
T Consensus 235 ~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~li 302 (372)
T PF12231_consen 235 ERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLI 302 (372)
T ss_pred HHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 3466666664444444444444333333332111111224666667777888 9999988876666665
No 177
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.51 E-value=0.2 Score=42.80 Aligned_cols=144 Identities=13% Similarity=0.146 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC----CCHHHHHHHHHHHHHHhcCC-chhHHHHHhCCChH
Q 015537 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----DYPQLQFEAAWALTNIASGT-SEHTKVVIDHGAVP 162 (405)
Q Consensus 88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~----~~~~~~~~a~~~L~ni~~~~-~~~~~~~~~~g~i~ 162 (405)
.-...|+..+..++|. .+....+++..+--.|..+|..+ ..+-+|..++.+++.+...+ .+....+...++||
T Consensus 94 nRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 94 NRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred chHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 3445566666666553 56677788887666666676543 24779999999999998854 45566777889999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH------HHhc-CChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL------VLSQ-GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 163 ~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~------i~~~-~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
..++.+..++..-+..|..++..|..++....-. +..- ..+..++..+.+.++..+.++++.+..+|+.+.
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 9999999999999999999999998877543222 1111 123445555557789999999999999999873
No 178
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.51 E-value=0.017 Score=59.32 Aligned_cols=136 Identities=18% Similarity=0.114 Sum_probs=103.6
Q ss_pred hhhccHHHHHhhhc----CCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC-CCCcchHHHHHHHHhHhhc
Q 015537 240 QVSPALPALAHLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 240 ~~~~~l~~L~~ll~----~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~nl~~ 314 (405)
.+..+.|.++++.. .+||+++..|..+|+.+..-+.+... .-+|.|+..+. ++++.++..++-++|.++-
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 34567788888874 46899999999999999876655443 33688999995 8899999999999999987
Q ss_pred CChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHH
Q 015537 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKL 394 (405)
Q Consensus 315 ~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~ 394 (405)
.-+...+ ..-+.|...|.+. ++.+|+.|..+|++|...+. +--.|.++.+..+|..+.. .|+.-
T Consensus 991 ~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~-----~Isdl 1054 (1251)
T KOG0414|consen 991 RFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNA-----EISDL 1054 (1251)
T ss_pred hcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcH-----HHHHH
Confidence 6664444 4567789999999 99999999999999975422 2237888888888865532 46655
Q ss_pred HH
Q 015537 395 AI 396 (405)
Q Consensus 395 A~ 396 (405)
|-
T Consensus 1055 Ak 1056 (1251)
T KOG0414|consen 1055 AK 1056 (1251)
T ss_pred HH
Confidence 54
No 179
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.49 E-value=0.098 Score=48.77 Aligned_cols=184 Identities=13% Similarity=0.113 Sum_probs=120.2
Q ss_pred HHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 75 LPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 75 l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
+..++..+.+. ..+.+..|+..|..++..+.-..+++.. ..++..+++.|....++..+..|+++|..++...+.
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~--- 363 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA--- 363 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH---
Confidence 34445555443 4677888898899988765333334332 235777888888744488999999999999986443
Q ss_pred HHHhC--CChHHHHHhhCCCCHHHHHHHHH-HHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhh
Q 015537 154 VVIDH--GAVPIFVKLLYSPSDDVREQAVW-ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (405)
Q Consensus 154 ~~~~~--g~i~~L~~lL~~~~~~i~~~a~~-~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~ 230 (405)
.+.+. -+|..++..-.+.++++...|.. |+.-++.+.|.. . +..+..++ ...|......++..+..++
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-~-------I~~i~~~I-lt~D~~~~~~~iKm~Tkl~ 434 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-C-------IVNISPLI-LTADEPRAVAVIKMLTKLF 434 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-H-------HHHHhhHH-hcCcchHHHHHHHHHHHHH
Confidence 23322 24566666666666665555554 455556666632 1 22233444 3356667777777888888
Q ss_pred cCCCCCC-hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 015537 231 RGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (405)
Q Consensus 231 ~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (405)
..-+... ...+..+.|.+++-..+....|+..++.||.++.
T Consensus 435 e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 435 ERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 7643222 2344788899999999999999999999998875
No 180
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.46 E-value=0.0045 Score=34.77 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=25.7
Q ss_pred chHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 328 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
++|.+.+++.++ ++.||..|+++|+.++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 478999999999 99999999999999975
No 181
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.43 E-value=0.11 Score=48.75 Aligned_cols=145 Identities=15% Similarity=0.181 Sum_probs=108.0
Q ss_pred CCchHHHHh-cCcHHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC-C---CCHHHHHH
Q 015537 106 SPPIEEVIR-SGVVPRFVEFLLRED--YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-S---PSDDVREQ 178 (405)
Q Consensus 106 ~~~~~~~~~-~g~l~~Li~lL~~~~--~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~-~---~~~~i~~~ 178 (405)
....+.+++ ..++..|...+++.. -+.+-..|+.++..+....|..-..+.+.|+++.++..+. . ++.++...
T Consensus 95 ~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~ 174 (379)
T PF06025_consen 95 GDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTS 174 (379)
T ss_pred ccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHH
Confidence 344555667 566777788887654 2688899999999999999999999999999999999887 4 57788888
Q ss_pred HHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCc------hhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhh
Q 015537 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK------LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHL 251 (405)
Q Consensus 179 a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~l 251 (405)
.-.+|+-||-+.. ..+.+.+.+.++.+++.+.+... .+.....-..+-.|.++.|.-....+..++..+-++
T Consensus 175 lP~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l 252 (379)
T PF06025_consen 175 LPNVLSAICLNNR-GLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRL 252 (379)
T ss_pred HHHHHhHHhcCHH-HHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 8899999997766 55778888999999999833221 245566667777888887665555554444444443
No 182
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.41 E-value=0.048 Score=47.21 Aligned_cols=141 Identities=12% Similarity=0.163 Sum_probs=101.1
Q ss_pred HHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC----CHHHHHHHHHHHHHHhc-CCchhHHHHHhCCChHHHH
Q 015537 91 YECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIAS-GTSEHTKVVIDHGAVPIFV 165 (405)
Q Consensus 91 ~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~----~~~~~~~a~~~L~ni~~-~~~~~~~~~~~~g~i~~L~ 165 (405)
..|+..|..+++ + .+....++++.+.-.|..+|+..+ .+.+|..++.+++.+.. ++++....+.+.+++|..+
T Consensus 68 cnaLaLlQ~vAs-h-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 68 CNALALLQCVAS-H-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHc-C-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 445555556655 3 677888999998777788886543 36789999999999888 3466778888999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCChhhHHH------HH-hcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDL------VL-SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 166 ~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~------i~-~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
+.++.++.--+..|...+..|..++....-. +. -..++..++..+...+++.+.+++.+|-..|+.+.
T Consensus 146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 9999998888999999999887665433211 11 11245556666667889999999999999999884
No 183
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.38 E-value=0.45 Score=45.23 Aligned_cols=263 Identities=14% Similarity=0.135 Sum_probs=157.3
Q ss_pred HHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC
Q 015537 91 YECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS 170 (405)
Q Consensus 91 ~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~ 170 (405)
..+...|..++......+....++..++..|+.++.+++ +.-|.....+|.++-......|..+.. .+...+..++..
T Consensus 108 ~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e 185 (409)
T PF01603_consen 108 QLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYE 185 (409)
T ss_dssp HHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcC
Confidence 345555666654322222344667778999999999998 899999999999987765666665543 556677777764
Q ss_pred -CCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHH
Q 015537 171 -PSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPAL 248 (405)
Q Consensus 171 -~~~~i~~~a~~~L~nl~~~~~-~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L 248 (405)
....-...++..++.+..+-. +.++..... ....++.+.....-.........++..++..+|. ....++..+
T Consensus 186 ~~~~~gI~elLeil~sii~gf~~plk~eh~~f-l~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~~l 260 (409)
T PF01603_consen 186 TERHNGIAELLEILGSIINGFAVPLKEEHKQF-LRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIKGL 260 (409)
T ss_dssp TS--STHHHHHHHHHHHHTT--SS--HHHHHH-HHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHhccCCCCcHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHH
Confidence 455667778899999886522 232221110 1234444553333455577777888888776542 223444555
Q ss_pred HhhhcCCChHHHHHHHHHHHHhccCCh-hHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhc-
Q 015537 249 AHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY- 326 (405)
Q Consensus 249 ~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~- 326 (405)
+..--..++.-..--+.-+..+...-+ .... -+..-++..+...+++.+..|.+.|+..+.| +.... ++..
T Consensus 261 lk~WP~t~s~Kev~FL~el~~il~~~~~~~f~-~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~-li~~~ 333 (409)
T PF01603_consen 261 LKHWPKTNSQKEVLFLNELEEILEVLPPEEFQ-KIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLS-LISQN 333 (409)
T ss_dssp HHHS-SS-HHHHHHHHHHHHHHHTT--HHHHH-HHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHH-HHHCT
T ss_pred HHhCCCCCchhHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHH-HHHhC
Confidence 555555666555556666666655432 2222 2223466778888899998888888766533 22222 3322
Q ss_pred --CchHHHHHhhcCC----CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015537 327 --QALPCLLNLLSGN----YKKSIKKEACWTVSNITAGNREQIQVIM 367 (405)
Q Consensus 327 --g~l~~L~~ll~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (405)
.++|.+...+... =+..|+..|.-++.-+..-+++..+.+.
T Consensus 334 ~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~ 380 (409)
T PF01603_consen 334 SRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCA 380 (409)
T ss_dssp HHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 2667777766542 1678999999999999888887666543
No 184
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.34 E-value=0.033 Score=38.23 Aligned_cols=67 Identities=16% Similarity=0.236 Sum_probs=51.1
Q ss_pred HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 015537 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370 (405)
Q Consensus 302 ~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 370 (405)
.+.|+|++|++++. +.....+.+.++++.++++..+.+...+|-.+.++|+-++ .+.+-.+.+-+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis-~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLIS-STEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHh-CCHHHHHHHHHcC
Confidence 46799999999864 4445556678999999999998868889999999998885 4555555554444
No 185
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.29 E-value=0.0081 Score=33.70 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=26.1
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASG 147 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~ 147 (405)
++|.+++++++++ +.+|..|+++|+.++..
T Consensus 1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPS-PEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SS-HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCC-HHHHHHHHHHHHHHHhh
Confidence 4799999999998 99999999999999763
No 186
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.24 E-value=0.054 Score=49.16 Aligned_cols=169 Identities=17% Similarity=0.164 Sum_probs=109.5
Q ss_pred HHHHH-HhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-CchhH
Q 015537 75 LPVMV-AGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG-TSEHT 152 (405)
Q Consensus 75 l~~l~-~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~-~~~~~ 152 (405)
+..++ ..+++.++.++..|+.++.-..-.+ .... ...++.|...++.++ +.++..|+.++..+... ....-
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld-~~~a-----~~~l~l~~~~~~~~~-~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLD-KELA-----KEHLPLFLQALQKDD-EEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-hHHH-----HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCchhc
Confidence 44554 6888999999999999998876544 2111 223777888887766 89999999999997653 12222
Q ss_pred HHHH-------hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh-h--CCCchhHHHHH
Q 015537 153 KVVI-------DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL-N--GQPKLSMLRNA 222 (405)
Q Consensus 153 ~~~~-------~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l-~--~~~~~~~~~~a 222 (405)
.... ...++..+...+.+.+++++..++..++.|.-.+.-.. ....+..|+-.. . ...+..++...
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 1111 23567888889999999999999999999875443221 012233333332 1 22346677777
Q ss_pred HHHHHHhhcCCCCCChhhhhccHHHHHhhhcC
Q 015537 223 TWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254 (405)
Q Consensus 223 ~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~ 254 (405)
..++-.+|...+..+......++|.+..+...
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 77777777765544444445666666665544
No 187
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=96.22 E-value=0.52 Score=44.33 Aligned_cols=192 Identities=13% Similarity=0.080 Sum_probs=118.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCc--hHHHHhcCcHHHHHHHhcCCC----CH--HHHHHHHHHHHHHhc
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRED----YP--QLQFEAAWALTNIAS 146 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~l~~Li~lL~~~~----~~--~~~~~a~~~L~ni~~ 146 (405)
...+...++..+.+.++.|+-...++..+.+-.. .+.+.+.-+.+.+-++|.+.+ .| -.+.-++.+|+-.|.
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 3456667777788899999999999987653222 234778878888989987643 12 345566677777777
Q ss_pred CCchhH--HHHHhCCChHHHHHhhCC-CCHH------HHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchh
Q 015537 147 GTSEHT--KVVIDHGAVPIFVKLLYS-PSDD------VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS 217 (405)
Q Consensus 147 ~~~~~~--~~~~~~g~i~~L~~lL~~-~~~~------i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~ 217 (405)
. ++.. ..++ +.||.|+.++.. .+++ +.+.+..+|.-+++..+ ....++..|+++.+.+... .++..
T Consensus 93 ~-pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-G~~~Lia~G~~~~~~Q~y~-~~~~~ 167 (698)
T KOG2611|consen 93 V-PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-GLMTLIASGGLRVIAQMYE-LPDGS 167 (698)
T ss_pred C-hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-hhHHHHhcCchHHHHHHHh-CCCCc
Confidence 6 4422 2333 579999999975 2333 88999999999998865 4566678899999987663 22221
Q ss_pred HHHH-HHHHHHHhhcC-C-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 015537 218 MLRN-ATWTLSNFCRG-K-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (405)
Q Consensus 218 ~~~~-a~~~l~~l~~~-~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (405)
.-.. ++..+.-+..+ . -.........++..+..-+...+....-+.|..|..+.
T Consensus 168 ~d~alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 168 HDMALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred hhHHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1111 11111111111 1 22223333334555554455556667778888887543
No 188
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.21 E-value=0.29 Score=50.07 Aligned_cols=186 Identities=16% Similarity=0.134 Sum_probs=129.6
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 015537 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (405)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~ 155 (405)
+.+-..+-+.++..+.+|+..+...++.. . ....-...|.+-.++.....+.+-.+...|+.+|.-|+......-..+
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~-~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEA-K-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhcc-c-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 44455666789999999999999988643 1 111122345566666665554447899999999999998654442222
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-C
Q 015537 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-P 234 (405)
Q Consensus 156 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~ 234 (405)
..+..|.|+.-+......+++.+..++--++...+. ....+.++..+ ++.++.++..+...+....... +
T Consensus 334 -~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 334 -AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred -HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCC
Confidence 236788999999888888888777777666643321 12455667777 8889999888666666555543 2
Q ss_pred C-CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 015537 235 Q-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (405)
Q Consensus 235 ~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (405)
. ........++|.++....+.+.+|+..+..+++.+..
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 2 2334457899999999999999999999999887754
No 189
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.48 Score=46.98 Aligned_cols=276 Identities=14% Similarity=0.117 Sum_probs=157.7
Q ss_pred cCcHHHHHHHhcCC-------CCHHHHHHHHHHHHHHhc--CCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 015537 115 SGVVPRFVEFLLRE-------DYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN 185 (405)
Q Consensus 115 ~g~l~~Li~lL~~~-------~~~~~~~~a~~~L~ni~~--~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~n 185 (405)
.|+++.+.+.|... +++.-.+-|++.+.++.+ ..+.-..-+.+.-+++.++..++++.--++..++..++.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 57899999999432 124456777888888766 323334445555677888888888888899999999999
Q ss_pred hhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC-CCCh-hhhhccHHHHHhhhcCCChHHHHHH
Q 015537 186 IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPF-DQVSPALPALAHLIHSNDDEVLTDA 263 (405)
Q Consensus 186 l~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a 263 (405)
+..+ .++..+-..+.+...+.+ ++.+..+...|+-++.-+..+.. .... ..+.+.++.|+.+-+.-+.++...+
T Consensus 487 ~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~v 562 (970)
T COG5656 487 IEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV 562 (970)
T ss_pred HHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence 9544 334444445677778888 55788888889999988887751 1111 1223444445555444456666665
Q ss_pred HHHHH-HhccCC----hhHHHHHHhcCChHHHHHhcCCCC------cchHHHHHHHHhHhhc---C---ChhhHHHHHhc
Q 015537 264 CWALS-YLSDGT----NDKIQAVIEAGVFPRLAEFLMHPS------PSVLIPALRTVGNIVT---G---DDMQTQCVIEY 326 (405)
Q Consensus 264 ~~~l~-~l~~~~----~~~~~~~~~~~~l~~L~~lL~~~~------~~v~~~a~~~l~nl~~---~---~~~~~~~~~~~ 326 (405)
...+. +.++.- ++....+++ ..+.....++..++ ++-+..|..+|..+.+ + .+...+ -+..
T Consensus 563 Me~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk-~le~ 640 (970)
T COG5656 563 MESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLK-YLEV 640 (970)
T ss_pred HHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHH-HHHH
Confidence 55433 333221 122221111 12233334443321 1234445555444332 1 122222 1334
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 327 g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
.+.|.+--++.+. ....=.+|+-.+-+.+-...+ +.. +.-|+.+.+.+++.+..+. .--.++.-|+.||.
T Consensus 641 slypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~p-imwgi~Ell~~~l~~~~t~----~y~ee~~~al~nfi 710 (970)
T COG5656 641 SLYPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IEP-IMWGIFELLLNLLIDEITA----VYSEEVADALDNFI 710 (970)
T ss_pred HHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hhh-hhhHHHHHHHhcccccchh----hhHHHHHHHHHHHH
Confidence 5777777777777 778888888888887654333 221 1235555555555443321 23467777777763
No 190
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.18 E-value=0.097 Score=45.62 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHh
Q 015537 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167 (405)
Q Consensus 88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~l 167 (405)
.....|+..|.-++-.+ .+....+.....+..|+++|.....+.++..++.+|..+.-+++.+.+.+-+.+++..++.+
T Consensus 106 ~li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 34555777777665554 45555666788999999999665558999999999999999999999999999999999999
Q ss_pred hCC--CCHHHHHHHHHHHHHhhCC
Q 015537 168 LYS--PSDDVREQAVWALGNIAGD 189 (405)
Q Consensus 168 L~~--~~~~i~~~a~~~L~nl~~~ 189 (405)
+++ .+.+++-.++..|.-+..+
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHcc
Confidence 987 4677877777777766544
No 191
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.17 E-value=0.13 Score=50.00 Aligned_cols=123 Identities=16% Similarity=0.176 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHh
Q 015537 171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250 (405)
Q Consensus 171 ~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ 250 (405)
.+...+..|...|.....+-|..++. ++..+++++ .+.|..|+..++..|..+|.+.+ ..+..+..+|++
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~Q 103 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQ 103 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHH
Confidence 47889999999999999998877655 577899999 88899999999999999999843 344678889999
Q ss_pred hhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC---CCCcchHHHHHHHHhH
Q 015537 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM---HPSPSVLIPALRTVGN 311 (405)
Q Consensus 251 ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~~l~n 311 (405)
+|.++|+.....+=++|..+...++.. .+..+...+. ..+..++..++..|..
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 999999887777777777776544432 1233333332 4566778877776643
No 192
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.17 E-value=0.29 Score=48.12 Aligned_cols=259 Identities=13% Similarity=0.121 Sum_probs=163.2
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 015537 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (405)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~ 155 (405)
-.++..+...+.+.+..-..-|.+.+ ...-+.++...++|.|+..+..++...-....+.-++..... .+
T Consensus 257 ~~fLeel~lks~~eK~~Ff~~L~~~l----~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~-~e----- 326 (690)
T KOG1243|consen 257 LLFLEELRLKSVEEKQKFFSGLIDRL----DNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE-EE----- 326 (690)
T ss_pred HHHHHhcccCcHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc-cc-----
Confidence 34455555556666655555555533 222345666677788777776554112222223333333333 22
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC
Q 015537 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235 (405)
Q Consensus 156 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~ 235 (405)
.+.+++|.|++++.+++..+|-..+.-+-+.... ..+.+++..+++.+..-+ .+++..++...+.++..|+..-..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhch
Confidence 5568999999999999999997776666665543 334556667888888888 889999999999999988865322
Q ss_pred CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcC
Q 015537 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315 (405)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 315 (405)
. ......+.++..+-.++++.++.+..-+++.++....... .+.-....+..-+.++-..-+..+++.+......
T Consensus 403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred h--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 2 2223455666666555678899999989988876532211 2222233444456666667777777777554432
Q ss_pred ChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 316 ~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
-+ +.-+...++|.+..+..++ +..+|..|.-++...-.
T Consensus 478 ~~---~~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 478 FD---QSEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE 515 (690)
T ss_pred cc---hhhhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence 22 2234557888888888888 88888888777766543
No 193
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.15 E-value=0.05 Score=44.21 Aligned_cols=147 Identities=12% Similarity=0.060 Sum_probs=90.3
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 015537 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (405)
Q Consensus 116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (405)
..++.|+.+|+.+.++.+|.+++++||.|..-+|...+.+... .+.- .-...+........... ++.... +
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~--~~~~~~~~~~~~~l~~~-~~~~~~----e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSK--SSENSNDESTDISLPMM-GISPSS----E 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCcc--ccccccccchhhHHhhc-cCCCch----H
Confidence 3578889999887769999999999999988766554422221 1100 00111112222222111 111111 2
Q ss_pred HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 015537 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (405)
Q Consensus 196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (405)
...-..++..|+..|.+..-..-...++.++.++..............++|.++..+.+.++..++..++-|+.|.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2333346778888884444455556677777777765544557777899999999998777788888777776654
No 194
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.11 E-value=0.02 Score=46.44 Aligned_cols=148 Identities=18% Similarity=0.124 Sum_probs=100.7
Q ss_pred ChHHHHHhhhC-CCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHH
Q 015537 202 GLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA 280 (405)
Q Consensus 202 ~i~~L~~~l~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~ 280 (405)
.+..++..|.. ...++++..++-++..+-.. ........+-+++..++...+.+-...++.++..+-...++....
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~---~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLDA---AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 35566666644 56778888888888877411 111122334455556666655667788888888888888876666
Q ss_pred HH-hcCChHHHHHhcC--CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchh-HHHHHHHHHHH
Q 015537 281 VI-EAGVFPRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS-IKKEACWTVSN 354 (405)
Q Consensus 281 ~~-~~~~l~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~-v~~~a~~~L~n 354 (405)
++ ..|+++.++.+.. ..+..++..++.+|..-| .+...+. .+...+++.|..++..+++.. +|..|+-+|+-
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRT-FISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHH-HHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 65 4589999999998 778888999999886544 3444444 455578999999996553566 88888777753
No 195
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.41 Score=47.35 Aligned_cols=158 Identities=20% Similarity=0.125 Sum_probs=101.9
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCCh
Q 015537 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238 (405)
Q Consensus 159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 238 (405)
++=+.+-.++.+.+|-++...+.+++---.... ..+++..|+..--++.+.+|++.|+-+|.-++..+|
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp---- 587 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP---- 587 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh----
Confidence 445556667777788888777776654221111 234566677774477889999999999998887765
Q ss_pred hhhhccHHHHHhhhc-CCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh
Q 015537 239 DQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (405)
Q Consensus 239 ~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 317 (405)
..+|..+.+|. +-++.|+..++.+|+-.|.+...... +..|=.+..++..-||..|+-+++.|.....
T Consensus 588 ----~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA-------i~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 588 ----EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA-------INLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred ----hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH-------HHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 34555566664 45899999999999988776543321 2344444556667789999999988875332
Q ss_pred hhHHHHHhcCchHHHHHhhcCC
Q 015537 318 MQTQCVIEYQALPCLLNLLSGN 339 (405)
Q Consensus 318 ~~~~~~~~~g~l~~L~~ll~~~ 339 (405)
++...- -.++...+.+++.+.
T Consensus 657 ~~~~pk-v~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 657 EQLCPK-VNGFRKQLEKVINDK 677 (929)
T ss_pred cccCch-HHHHHHHHHHHhhhh
Confidence 221111 124566677777665
No 196
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.05 E-value=2.1 Score=44.03 Aligned_cols=238 Identities=18% Similarity=0.191 Sum_probs=140.6
Q ss_pred hcCcHHHHHHHhcCCC----CHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC----CCC----HHHHHHHHH
Q 015537 114 RSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY----SPS----DDVREQAVW 181 (405)
Q Consensus 114 ~~g~l~~Li~lL~~~~----~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~----~~~----~~i~~~a~~ 181 (405)
+.|++..+++++.+-. ...+-...+..|...+.- +.+|+.+++.|+++.|+..|. ... +.+.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 4688988988887532 134455556666666655 899999999999999999885 333 678888887
Q ss_pred HHHHhhCCChhhHH----HHHh--------cCChHHHHHhhhCC---CchhHHHHHHHHHHHhhcCCCCCChhhhhccHH
Q 015537 182 ALGNIAGDSPRCRD----LVLS--------QGGLVPLLAQLNGQ---PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALP 246 (405)
Q Consensus 182 ~L~nl~~~~~~~~~----~i~~--------~~~i~~L~~~l~~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~ 246 (405)
++--+..+.....- .... ...+..+++.+... .++.+....+..|-+|+.+.+......+..+-|
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p 273 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKP 273 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHH
Confidence 77777643221000 0001 11256666666322 368899999999999999864333322222323
Q ss_pred HHHhhh-----cCCChHHHHHHHHHHHHhccC---C---hhHHHHHHhcCChHHHHHhcCCCC--------c--------
Q 015537 247 ALAHLI-----HSNDDEVLTDACWALSYLSDG---T---NDKIQAVIEAGVFPRLAEFLMHPS--------P-------- 299 (405)
Q Consensus 247 ~L~~ll-----~~~d~~v~~~a~~~l~~l~~~---~---~~~~~~~~~~~~l~~L~~lL~~~~--------~-------- 299 (405)
.+ .+= +..+..+. +.+++.++.+ + ....+.+++.|++...+..|...- +
T Consensus 274 ~l-~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 274 YL-DFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred hc-ChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 22 111 11223333 3333444322 2 245677899999998888874221 1
Q ss_pred chHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 300 ~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
.-...+++.|.-++.+... ++..+..++++.+..+=..+.+..|=.-|--+|-.+..
T Consensus 350 psLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CcHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 1234577888888876553 44457777886665555544344444444455555543
No 197
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.02 E-value=0.18 Score=49.08 Aligned_cols=129 Identities=19% Similarity=0.155 Sum_probs=83.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 015537 120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS 199 (405)
Q Consensus 120 ~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~ 199 (405)
.++...+ ++ +..+.-|+..|......-|+... .++..++.|..+++..|+.+|+..|..+|.+.++....
T Consensus 27 ~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k--- 96 (556)
T PF05918_consen 27 EILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK--- 96 (556)
T ss_dssp HHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH---
T ss_pred HHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH---
Confidence 3344444 34 78888899999888888777665 35678899999999999999999999999988765444
Q ss_pred cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhc---CCChHHHHHHHHHHH
Q 015537 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH---SNDDEVLTDACWALS 268 (405)
Q Consensus 200 ~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~---~~d~~v~~~a~~~l~ 268 (405)
+.+.|+.+| ...++.-...+-++|..|...+| .+.+..+...+. +.|+.++..++..|.
T Consensus 97 --vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 97 --VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp --HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred --HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 456788888 67777777777777777766543 344444444443 467778888777664
No 198
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.00 E-value=0.22 Score=43.22 Aligned_cols=186 Identities=14% Similarity=0.139 Sum_probs=121.3
Q ss_pred ChHHHHHHHHHHHHhhccCCCCchHHHH--hcCcHHHHHHHhcC-------CC-CH---HHHHHHHHHHHHHhcCCchhH
Q 015537 86 DSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLR-------ED-YP---QLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 86 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~--~~g~l~~Li~lL~~-------~~-~~---~~~~~a~~~L~ni~~~~~~~~ 152 (405)
+++.+..|+..|.+--.. .+....++ .-|.+..|++=+-+ +. .+ .-...|+..|.-+|++ ++.|
T Consensus 8 ~~~~Re~Al~eLsk~r~~--~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr 84 (262)
T PF04078_consen 8 NPETRENALLELSKKRES--FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETR 84 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTH
T ss_pred CcchHHHHHHHHHHhhhc--ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHH
Confidence 678899999998876432 34443322 45777777553322 11 11 2234555566667776 9999
Q ss_pred HHHHhCCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHH
Q 015537 153 KVVIDHGAVPIFVKLLYSP-----SDDVREQAVWALGNIAG-DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~-----~~~i~~~a~~~L~nl~~-~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l 226 (405)
..+++..+.-+|..+|+.. .+.++-.+++++|.+.. ++++.-..+...++++..++.+ ..+++-.+..|++.+
T Consensus 85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m-e~GselSKtvAtfIl 163 (262)
T PF04078_consen 85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM-EFGSELSKTVATFIL 163 (262)
T ss_dssp HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH-HHS-HHHHHHHHHHH
T ss_pred HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH-HhccHHHHHHHHHHH
Confidence 9999999888888888653 36688999999999985 4566777888999999999999 556777788888888
Q ss_pred HHhhcCCC--------CCChhhhhccHHHH-HhhhcCCChHHHHHHHHHHHHhccCCh
Q 015537 227 SNFCRGKP--------QPPFDQVSPALPAL-AHLIHSNDDEVLTDACWALSYLSDGTN 275 (405)
Q Consensus 227 ~~l~~~~~--------~~~~~~~~~~l~~L-~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (405)
..+-.++. ...+..+..++..+ ..+....++.+...++++-..|+++..
T Consensus 164 qKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 164 QKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred HHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 77665531 11122223444333 334456788899999999999987654
No 199
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.87 E-value=0.042 Score=37.74 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 015537 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQG 201 (405)
Q Consensus 134 ~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~ 201 (405)
...|+|+++++++. +.....+.+.++++.++++... +...+|-.|.++|+-++.... ..+.+.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~-G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE-GAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH-HHHHHHHcC
Confidence 46799999999886 5666666677999999999875 678999999999999986654 445554443
No 200
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.85 E-value=0.67 Score=44.10 Aligned_cols=234 Identities=13% Similarity=0.078 Sum_probs=138.3
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 234 (405)
.++...+..|+.++.++|+.-|+....+|.++.+.-...|..+.. .+...+.+.+.......-...++..+..+..+..
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 344456788999999999999999999999987665556555543 2556677777666677778888889999988864
Q ss_pred CCC-hhhhhccHHHHHhhhcCCC-hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537 235 QPP-FDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (405)
Q Consensus 235 ~~~-~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl 312 (405)
.+. .....-....++.|.++.. ...-.....++..+...++.....++ ..++..--..+..=...-+.-+..+
T Consensus 208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~llk~WP~t~s~Kev~FL~el~~i 282 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KGLLKHWPKTNSQKEVLFLNELEEI 282 (409)
T ss_dssp SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCchhHHHHHHHHHHH
Confidence 333 3333334456677766654 44456666666666666665544332 4445544344444444556666666
Q ss_pred hcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhcccccchhh
Q 015537 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH---VHAFSIIVAFFFMFLHFFFGA 389 (405)
Q Consensus 313 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~lL~~~~~~~~~~ 389 (405)
...-+...-.-+...+...+...+.++ +..|.+.|+..+.|= . +..++. ..++|.+...|......-=..
T Consensus 283 l~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~-----~-~~~li~~~~~~i~p~i~~~L~~~~~~HWn~ 355 (409)
T PF01603_consen 283 LEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNE-----Y-FLSLISQNSRVILPIIFPALYRNSKNHWNQ 355 (409)
T ss_dssp HTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH-----H-HHHHHHCTHHHHHHHHHHHHSSTTSS-SST
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH-----H-HHHHHHhChHHHHHHHHHHHHHHHHHHhhH
Confidence 654432222222335677888888888 889988887665432 2 233333 236777777765422210123
Q ss_pred hHHHHHHHHHhh
Q 015537 390 IIYKLAIWLCLV 401 (405)
Q Consensus 390 ~vr~~A~~al~n 401 (405)
.||..|.-++.-
T Consensus 356 ~Vr~~a~~vl~~ 367 (409)
T PF01603_consen 356 TVRNLAQNVLKI 367 (409)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 588877766643
No 201
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.82 E-value=0.48 Score=44.42 Aligned_cols=207 Identities=16% Similarity=0.182 Sum_probs=127.0
Q ss_pred HHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHH---HhhcCC--CCCCh-hhhhccHHHHHhh
Q 015537 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS---NFCRGK--PQPPF-DQVSPALPALAHL 251 (405)
Q Consensus 178 ~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~---~l~~~~--~~~~~-~~~~~~l~~L~~l 251 (405)
.|+..|-.+....+..-..+...+++..+++.+. ..+..++. +-..+. +.... .... ..-
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~--------~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 68 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQ--------YEVDFALEENKNEEAGSGIPPEYKESSVD------GYS 68 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHH--------HHHHHHHhcccccCCCCCCCCCccccccc------ccc
Confidence 4566666776666666677888999999999982 12222222 111111 11110 0000 000
Q ss_pred hcCCChHHHHHHHHHHHHhcc---CChhHHHHHHh-cCChHHHHHhcCCCC---cchHHHHHHHHhHhhcCChhhHHHHH
Q 015537 252 IHSNDDEVLTDACWALSYLSD---GTNDKIQAVIE-AGVFPRLAEFLMHPS---PSVLIPALRTVGNIVTGDDMQTQCVI 324 (405)
Q Consensus 252 l~~~d~~v~~~a~~~l~~l~~---~~~~~~~~~~~-~~~l~~L~~lL~~~~---~~v~~~a~~~l~nl~~~~~~~~~~~~ 324 (405)
+...........+..+..+.. +..+....+++ ..++..|..++.+.. +.+...|+.++..+...++.....+.
T Consensus 69 i~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~ 148 (379)
T PF06025_consen 69 ISYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQ 148 (379)
T ss_pred cCHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 000112233444444554444 34445555666 556667777777654 57888999999999999998888899
Q ss_pred hcCchHHHHHhhc-CC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHH-HHHHHHh
Q 015537 325 EYQALPCLLNLLS-GN--YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYK-LAIWLCL 400 (405)
Q Consensus 325 ~~g~l~~L~~ll~-~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~-~A~~al~ 400 (405)
+.|+.+.+++.+. .. +..++-...--+|+.||-+ ..-.+.+.+.+.++.+++++.+...-. ..++ +.+-.||
T Consensus 149 e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~~~~~---~l~~~d~a~~lG 224 (379)
T PF06025_consen 149 EAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSPDYVK---ALRRRDTASNLG 224 (379)
T ss_pred HcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCHHHHH---HhcccchHHHHH
Confidence 9999999999998 43 2344555555667777655 445788889999999999998765441 2222 5555666
Q ss_pred hh
Q 015537 401 VT 402 (405)
Q Consensus 401 n~ 402 (405)
+.
T Consensus 225 ~~ 226 (379)
T PF06025_consen 225 NS 226 (379)
T ss_pred HH
Confidence 54
No 202
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.72 E-value=0.83 Score=40.65 Aligned_cols=228 Identities=12% Similarity=0.115 Sum_probs=146.8
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc--CChHHHHHhhhCCC-chhHHHHHHHHHHHh
Q 015537 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ--GGLVPLLAQLNGQP-KLSMLRNATWTLSNF 229 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~--~~i~~L~~~l~~~~-~~~~~~~a~~~l~~l 229 (405)
..+.++|.+..|+..+..-+-+-+..++.+..|+-......+....+. .-.+.+-.++.... .+++.-.+...+...
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC 152 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 346677999999999988777777788888888764322222211110 01223333332323 366666666666666
Q ss_pred hcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCC----hHHHHHhcCCCCcchHHHH
Q 015537 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV----FPRLAEFLMHPSPSVLIPA 305 (405)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----l~~L~~lL~~~~~~v~~~a 305 (405)
.++..-........-+......++.+.-++..+|..+...+.......+..++..+. .+.--.++.+.+.-.+..+
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 665432233333555566666777777889999999998876555444444554433 2335567788899999999
Q ss_pred HHHHhHhhcCCh---hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHhCcHHHHHHHHh
Q 015537 306 LRTVGNIVTGDD---MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG--NREQIQVIMHVHAFSIIVAFFF 380 (405)
Q Consensus 306 ~~~l~nl~~~~~---~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~lL~ 380 (405)
+..+|.+..+.. .-++++-...-+..++.+|..+ ...++-+|..+..-..++ .++-+..++.. =-+.|++++.
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvAnpnK~q~V~~IL~~-Nr~KLl~~l~ 310 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVANPNKPQPVRDILVR-NRPKLLELLH 310 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhcCCCCCchHHHHHHh-CcHHHHHHHH
Confidence 999999986554 3455666667899999999999 999999999888888773 33334444321 1355666665
Q ss_pred cc
Q 015537 381 MF 382 (405)
Q Consensus 381 ~~ 382 (405)
..
T Consensus 311 ~f 312 (342)
T KOG1566|consen 311 DF 312 (342)
T ss_pred Hh
Confidence 44
No 203
>PRK14707 hypothetical protein; Provisional
Probab=95.66 E-value=4.4 Score=45.47 Aligned_cols=319 Identities=14% Similarity=0.046 Sum_probs=175.6
Q ss_pred CHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
+|..+++.+.. .+...-..|+..|...+..+ ......+-..|+-..|-.+-+-++.+.....+.++-..++.+ +..+
T Consensus 206 ~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-~~l~ 283 (2710)
T PRK14707 206 GVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDD-PGLR 283 (2710)
T ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh-HHHH
Confidence 45556665543 44444445555555555443 333444444555555555555566445555555555556644 5655
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHH-Hhhc
Q 015537 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS-NFCR 231 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~-~l~~ 231 (405)
+.+-..+.-..|-.+-+-++..+...+...|..=..+++..+..+ +.-.+...++-|.+.++..+-+.++.+|. .|+.
T Consensus 284 ~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~ 362 (2710)
T PRK14707 284 KALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVA 362 (2710)
T ss_pred HhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcc
Confidence 555444433333333344777777777777766555666555443 33356667777778887776666666665 4554
Q ss_pred CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (405)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n 311 (405)
...........++-..|..+-+-+|..+...+..+|..=..++.+..+.+-..|+-..|-.+-+=++..+...+...|.-
T Consensus 363 d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~ 442 (2710)
T PRK14707 363 DPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAG 442 (2710)
T ss_pred CHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHH
Confidence 43222222234455556666666887777777777776554566655544444555555555556777888888888877
Q ss_pred hhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhH
Q 015537 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAII 391 (405)
Q Consensus 312 l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~v 391 (405)
-+..+.+..+.+--.++...|-.+-+-+ +..+..+++-.|.-=....++..+.+ +..-+..-++-|+...+. +.-
T Consensus 443 ~la~d~~l~~~~~p~~va~~LnalSKWP-d~p~c~~aa~~La~~l~~~~~l~~a~-~~q~~~~~L~aLSK~Pd~---~~c 517 (2710)
T PRK14707 443 RLAHDTELCKALDPINVTQALDALSKWP-DTPICGQTASALAARLAHERRLRKAL-KPQEVVIALHSLSKWPDT---PIC 517 (2710)
T ss_pred HHhccHHHHhhcChHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhcccHHHHhhc-CHHHHHHHHHHhhcCCCc---HHH
Confidence 7766665544333333333333333344 77777766666555545556644433 322233333445444333 344
Q ss_pred HHHHHHHHh
Q 015537 392 YKLAIWLCL 400 (405)
Q Consensus 392 r~~A~~al~ 400 (405)
.+.+.|..+
T Consensus 518 ~~A~~~lA~ 526 (2710)
T PRK14707 518 AEAASALAE 526 (2710)
T ss_pred HHHHHHHHH
Confidence 455555443
No 204
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.62 E-value=0.91 Score=45.97 Aligned_cols=238 Identities=16% Similarity=0.106 Sum_probs=128.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhc--cCCCCchHHHHhcC---cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLS--IERSPPIEEVIRSG---VVPRFVEFLLREDYPQLQFEAAWALTNIASGTS 149 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s--~~~~~~~~~~~~~g---~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~ 149 (405)
+-.|+..+..-+.+........+..-.. .......+.+...| .+..+.+++.+.. .--.+|++.|..+.....
T Consensus 349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~ 426 (618)
T PF01347_consen 349 FSRLVRLLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSKK--LTDDEAAQLLASLPFHVR 426 (618)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT---S-HHHHHHHHHHHHHT--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcC
Confidence 5666666666555444433332221100 00011123333444 4566677777644 223445555666555422
Q ss_pred hhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChh---------hHHHHHhcCChHHHHHhhh---CC
Q 015537 150 EHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPR---------CRDLVLSQGGLVPLLAQLN---GQ 213 (405)
Q Consensus 150 ~~~~~~~~~g~i~~L~~lL~~----~~~~i~~~a~~~L~nl~~~~~~---------~~~~i~~~~~i~~L~~~l~---~~ 213 (405)
.-.. ..+..+..++.+ .++.+...|+-+++.+....-. ..........++.+...+. ..
T Consensus 427 ~Pt~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 501 (618)
T PF01347_consen 427 RPTE-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSR 501 (618)
T ss_dssp ---H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHT
T ss_pred CCCH-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 2222 235566666665 4677888888888888632110 0111222345677777764 34
Q ss_pred CchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCC---ChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHH
Q 015537 214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290 (405)
Q Consensus 214 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L 290 (405)
.+..-+..++.+|.|+-.. ..++.+..++... ...++..|+|++..++...++.+. +.+
T Consensus 502 ~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~--------~~l 563 (618)
T PF01347_consen 502 GDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVR--------EIL 563 (618)
T ss_dssp T-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHH--------HHH
T ss_pred cCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHH--------HHH
Confidence 5678888999999999543 5788888888766 588999999999999877765544 666
Q ss_pred HHhcCC--CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHH
Q 015537 291 AEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE 347 (405)
Q Consensus 291 ~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~ 347 (405)
.+++.+ .+.++|..|+.+|-. + ++.. ..+..+...+...++..|...
T Consensus 564 ~~I~~n~~e~~EvRiaA~~~lm~--~-~P~~-------~~l~~i~~~l~~E~~~QV~sf 612 (618)
T PF01347_consen 564 LPIFMNTTEDPEVRIAAYLILMR--C-NPSP-------SVLQRIAQSLWNEPSNQVASF 612 (618)
T ss_dssp HHHHH-TTS-HHHHHHHHHHHHH--T----H-------HHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHhcCCCCChhHHHHHHHHHHh--c-CCCH-------HHHHHHHHHHhhCchHHHHHH
Confidence 777643 356788888766633 2 2222 235556777766645555443
No 205
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.48 E-value=0.43 Score=48.88 Aligned_cols=189 Identities=14% Similarity=0.057 Sum_probs=132.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChh
Q 015537 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD 239 (405)
Q Consensus 160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 239 (405)
+.+.+..-+.+++..-+-.++..+.-+..... .....-..|.+..++.....+.+..+...++.+|..++..-......
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 33445555566777777788887777765544 11111123345566666667889999999999999999887555556
Q ss_pred hhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChh-
Q 015537 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM- 318 (405)
Q Consensus 240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~- 318 (405)
.....+|.++.-+....+.++..+..++-.++..... ....+.+...+.+.++.++..+...++......+.
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 6678888898888887787777777766665542211 12457888999999999999988888887765541
Q ss_pred hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 319 ~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
....---.++++.++....+. +..||+.|.-+++-+..
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 111111235788888888888 99999999998888865
No 206
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.43 E-value=0.22 Score=49.07 Aligned_cols=212 Identities=13% Similarity=0.110 Sum_probs=124.8
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 234 (405)
+....++|.|+..|. +..++-..+-.+..|+...+ ........++.|...++......+......=+.-|.+.
T Consensus 308 v~~~kiLP~L~~el~--n~~~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~K-- 380 (700)
T KOG2137|consen 308 VLFQKILPTLVAELV--NTKMVPIVLPLVLLIAEGLS---QNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEK-- 380 (700)
T ss_pred HHHHhhhhHHHHHhc--cccccccccchhhhhhhccc---hhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhh--
Confidence 444456677776664 22333333333333433222 11123335566666663322322222222212222221
Q ss_pred CCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-CCCCcchHHHHHHHHhHhh
Q 015537 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIV 313 (405)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~nl~ 313 (405)
-........++|.|..-+++.+..++..++..+..+++.-+. ..+..-++|.+..+- .+.+..++..++-+++.++
T Consensus 381 t~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 381 TPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI 457 (700)
T ss_pred CChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH
Confidence 233445578899999999999999999999999888765442 256667788887774 5567789999999999998
Q ss_pred cCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcc
Q 015537 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMF 382 (405)
Q Consensus 314 ~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~ 382 (405)
..-|. -.++ ..+.++....... ++.+......+.-++....+.. ..++...++|.++-+....
T Consensus 458 q~lD~--~~v~--d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 458 QRLDK--AAVL--DELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHH--HHhH--HHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcc
Confidence 32221 1111 2355566666666 7888877777777776543332 4555678888888776544
No 207
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.40 E-value=2.8 Score=40.67 Aligned_cols=283 Identities=13% Similarity=0.070 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHh
Q 015537 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167 (405)
Q Consensus 88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~l 167 (405)
..+..|+..++..+..-+-.++..+ -..--+++.....++.|..+...|..+......... ... ..+...
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~~ 74 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFRD 74 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHHH
Confidence 4566667667666544322222222 222345566555577888888888888876433111 111 122222
Q ss_pred hC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCC--------------------------CchhHHH
Q 015537 168 LY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ--------------------------PKLSMLR 220 (405)
Q Consensus 168 L~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~--------------------------~~~~~~~ 220 (405)
+. ...++....-+.+|..|..++.... ..+.+..+.|..-+... .+.....
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT~~Grdi~--~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALTDNGRDID--FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHHcCCcCch--hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 23 3455556667777778877766552 23555666665555110 1233445
Q ss_pred HHHHHHHHhhcCC-CCCChhhhhccHHHHHhhhc-CCChHHHHHHHHHHHHhccC---ChhHHHHHHhcCChHHHHHhcC
Q 015537 221 NATWTLSNFCRGK-PQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLM 295 (405)
Q Consensus 221 ~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~ 295 (405)
.....+.++...+ .......+.+++..+..+.. +.++.....++..+-.+... +.+. ++.++..|.
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s---------l~~~i~vLC 223 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES---------LSPCIEVLC 223 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH---------HHHHHHHHh
Confidence 5555666666655 33444555666666555543 23343444444444333221 2222 223333332
Q ss_pred --CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015537 296 --HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-----YKKSIKKEACWTVSNITAGNREQIQVIMH 368 (405)
Q Consensus 296 --~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 368 (405)
.+..+....+-.++.|++...-.+ ..+..|..+|.++ .+..+-+.|...+..+..+..++...-+.
T Consensus 224 si~~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~ 296 (464)
T PF11864_consen 224 SIVNSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLP 296 (464)
T ss_pred hHhcccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceec
Confidence 223366777888888888543222 2356677888322 14566678888888887765332222222
Q ss_pred -h--CcHHHHHHHHhcccccchhhhHHHHHHHHH
Q 015537 369 -V--HAFSIIVAFFFMFLHFFFGAIIYKLAIWLC 399 (405)
Q Consensus 369 -~--~~i~~L~~lL~~~~~~~~~~~vr~~A~~al 399 (405)
. -++|.|...++..... ..++|-....-++
T Consensus 297 ~~~~~vl~sl~~al~~~~~~-v~~eIl~~i~~ll 329 (464)
T PF11864_consen 297 FSPSSVLPSLLNALKSNSPR-VDYEILLLINRLL 329 (464)
T ss_pred ccHHHHHHHHHHHHhCCCCe-ehHHHHHHHHHHH
Confidence 2 2677777777755333 2334444333333
No 208
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.37 E-value=0.52 Score=39.02 Aligned_cols=141 Identities=18% Similarity=0.159 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhcC-Cchh----HHHHH------hCCC-hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 015537 133 LQFEAAWALTNIASG-TSEH----TKVVI------DHGA-VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200 (405)
Q Consensus 133 ~~~~a~~~L~ni~~~-~~~~----~~~~~------~~g~-i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~ 200 (405)
+|..|+.+|..++.. ++.. ...++ ..+. .+.+.-++.++++.++..|+.++..|..++..+-...-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566777777777765 2211 01111 1122 3444456678899999999999999986654332222211
Q ss_pred C-------------------ChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCC--ChhhhhccHHHHHhhhcCCChHH
Q 015537 201 G-------------------GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP--PFDQVSPALPALAHLIHSNDDEV 259 (405)
Q Consensus 201 ~-------------------~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~l~~L~~ll~~~d~~v 259 (405)
+ ....|+..+....+..+...++.++..|....|-. .......++..+..++.+.|+++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 12345555656778889999999999999987533 33444666677777888999999
Q ss_pred HHHHHHHHHHhccC
Q 015537 260 LTDACWALSYLSDG 273 (405)
Q Consensus 260 ~~~a~~~l~~l~~~ 273 (405)
+..++.+++.+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999888654
No 209
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.30 E-value=0.22 Score=53.06 Aligned_cols=162 Identities=15% Similarity=0.083 Sum_probs=106.2
Q ss_pred HHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCc
Q 015537 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP 299 (405)
Q Consensus 220 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 299 (405)
.++.|+...++...+ -.....+.+..++..+..+...++..|+.||+.+...++.. +....+-..+..-+.+...
T Consensus 795 ~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dssa 869 (1692)
T KOG1020|consen 795 DDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSA 869 (1692)
T ss_pred hhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchh
Confidence 445555555544321 11223577788888888888999999999999999877643 2222334455555666788
Q ss_pred chHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 015537 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFF 379 (405)
Q Consensus 300 ~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL 379 (405)
.|+.+|+..+|..+...++..... .+.+..-+.+. .-.||+.+..++.-+|...|+. . .+...+.++|
T Consensus 870 sVREAaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf-~-----~i~~~cakml 937 (1692)
T KOG1020|consen 870 SVREAALDLVGRFVLSIPELIFQY-----YDQIIERILDT-GVSVRKRVIKILRDICEETPDF-S-----KIVDMCAKML 937 (1692)
T ss_pred HHHHHHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCCh-h-----hHHHHHHHHH
Confidence 999999999999988777655533 44566666666 7889999999999999866552 1 1223344455
Q ss_pred hcccccchhhhHHHHHHHHHh
Q 015537 380 FMFLHFFFGAIIYKLAIWLCL 400 (405)
Q Consensus 380 ~~~~~~~~~~~vr~~A~~al~ 400 (405)
..-.++ |..|++-++-.+-
T Consensus 938 rRv~DE--Eg~I~kLv~etf~ 956 (1692)
T KOG1020|consen 938 RRVNDE--EGNIKKLVRETFL 956 (1692)
T ss_pred HHhccc--hhHHHHHHHHHHH
Confidence 444444 3346665554443
No 210
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.29 E-value=0.22 Score=49.84 Aligned_cols=138 Identities=16% Similarity=0.173 Sum_probs=83.9
Q ss_pred ccHHHHHhhhcCC----ChHHHHHHHHHHHHhccC---ChhHHHHHHhcCChHHHHHhc----CCCCcchHHHHHHHHhH
Q 015537 243 PALPALAHLIHSN----DDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFL----MHPSPSVLIPALRTVGN 311 (405)
Q Consensus 243 ~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL----~~~~~~v~~~a~~~l~n 311 (405)
..+..+..+++++ .+.+...++.+++.+... +.......+-..+++.+...| +..+...+..++++|||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 4556666776653 456777777777776532 111100111123455555555 33455567789999999
Q ss_pred hhcCChhhHHHHHhcCchHHHHHhhc-C-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhh
Q 015537 312 IVTGDDMQTQCVIEYQALPCLLNLLS-G-NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGA 389 (405)
Q Consensus 312 l~~~~~~~~~~~~~~g~l~~L~~ll~-~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~ 389 (405)
+.... .++.+..++. . ..+..+|..|.|+|.+++...+..++ +.|+.++.+... ++
T Consensus 473 ~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e---~~ 530 (574)
T smart00638 473 AGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAE---PP 530 (574)
T ss_pred cCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCC---Ch
Confidence 86422 2344455554 1 22568999999999999866665444 345666654433 46
Q ss_pred hHHHHHHHHHhhh
Q 015537 390 IIYKLAIWLCLVT 402 (405)
Q Consensus 390 ~vr~~A~~al~n~ 402 (405)
+||-.|..+|..+
T Consensus 531 EvRiaA~~~lm~t 543 (574)
T smart00638 531 EVRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHHHhc
Confidence 8999999988754
No 211
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.19 E-value=0.063 Score=52.53 Aligned_cols=183 Identities=16% Similarity=0.180 Sum_probs=130.9
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
.+|.+++++.+.|..++..-+..+-++. ..-.+.+++..++|.+..-+.+.+ +.++++++.++..++..-.+.
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i----~~Lt~~~~~d~I~phv~~G~~DTn-~~Lre~Tlksm~~La~kL~~~-- 403 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYI----DHLTKQILNDQIFPHVALGFLDTN-ATLREQTLKSMAVLAPKLSKR-- 403 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHh----hhcCHHhhcchhHHHHHhhcccCC-HHHHHHHHHHHHHHHhhhchh--
Confidence 4789999999999999988888887775 344556778889999999998888 899999999999888742221
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
.+....+..+-.+-.+++..++....-||+.++.+. +..|+.+. +.+..+-+ .++-...+....+.++..+..
T Consensus 404 -~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL----~~aftral-kdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVL----ASAFTRAL-KDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred -hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhcccc----chhhhhhh-cCCCCCchhhhhHHHhhcccc
Confidence 344445666666666677889999999999998763 33333322 23444445 566667788888888776665
Q ss_pred CCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 015537 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (405)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (405)
.+ .......++|.+..+.-+.+..++..+..++...-
T Consensus 478 ~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 478 FD--QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred cc--hhhhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 33 23333578888888888888888877777665543
No 212
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.17 E-value=0.57 Score=46.35 Aligned_cols=136 Identities=17% Similarity=0.114 Sum_probs=97.3
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCC
Q 015537 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236 (405)
Q Consensus 157 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~ 236 (405)
...++|.|..-+++.+..+++.++..+..++..-+ -.++..-+++.+-++.....+..++.+++-|+..+.+. .
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~---l 460 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR---L 460 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH---H
Confidence 34678888888888999999999999999985433 12334446777777766788999999999999999843 2
Q ss_pred ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCc
Q 015537 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP 299 (405)
Q Consensus 237 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 299 (405)
+...+-..+..+....+..|+.+....+.+...+.....+. ..++...++|.++.+...+.-
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccc
Confidence 22222344455556667789999988888887776554443 345566788999988866553
No 213
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.04 E-value=2.5 Score=47.50 Aligned_cols=273 Identities=12% Similarity=0.063 Sum_probs=147.2
Q ss_pred CChHHHHHHHHHHHHhhccC--CCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChH
Q 015537 85 NDSGVQYECTTQFRKLLSIE--RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162 (405)
Q Consensus 85 ~~~~~~~~a~~~l~~l~s~~--~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~ 162 (405)
.+..+...|+..|++++..- ..+....-.+..++.+|..++.+....+++...+.|+.++..... .-+..| =+
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkSG-Wk 1223 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKSG-WK 1223 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhcC-cH
Confidence 45678888888888875421 112112223456788888888766668999999999999866422 233444 33
Q ss_pred HHHHhh----CCCCHHHHHHHHHHHHHhhCCChhh-----HHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh----
Q 015537 163 IFVKLL----YSPSDDVREQAVWALGNIAGDSPRC-----RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF---- 229 (405)
Q Consensus 163 ~L~~lL----~~~~~~i~~~a~~~L~nl~~~~~~~-----~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l---- 229 (405)
.++.++ .+.++.+...|..++..|..+.-.. .+.+. ..+..+..+-.+..+..+--.++..|+++
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 333433 4567889999999998887542110 01111 12334444443333344433444444433
Q ss_pred hcCC-C----------------------C------CCh---hhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC----
Q 015537 230 CRGK-P----------------------Q------PPF---DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---- 273 (405)
Q Consensus 230 ~~~~-~----------------------~------~~~---~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---- 273 (405)
..+. . . ... ...-+++..|..+....+++|+..|+.+|-.+...
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 1110 0 0 000 11122333344456667899999999988776532
Q ss_pred -ChhHHHHHHhcCChHHHHHhcCCC------------------C-c----chHHHHHHHHhHhh---cCChhhHHHHHhc
Q 015537 274 -TNDKIQAVIEAGVFPRLAEFLMHP------------------S-P----SVLIPALRTVGNIV---TGDDMQTQCVIEY 326 (405)
Q Consensus 274 -~~~~~~~~~~~~~l~~L~~lL~~~------------------~-~----~v~~~a~~~l~nl~---~~~~~~~~~~~~~ 326 (405)
+++....++. +++-+++..+++. + . -+...+..+|.+++ ..--.....++ .
T Consensus 1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L-~ 1459 (1780)
T PLN03076 1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL-K 1459 (1780)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 2334444443 4455555544311 0 0 02233344444443 22212222222 2
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-----CHHHHHHHH
Q 015537 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAG-----NREQIQVIM 367 (405)
Q Consensus 327 g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~l~ 367 (405)
+++..|..++..+ +..+.+..+-+|.++... ++++...++
T Consensus 1460 ~~l~ll~~ci~q~-n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~ 1504 (1780)
T PLN03076 1460 KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVV 1504 (1780)
T ss_pred HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 5666677777777 888888899999888752 455554443
No 214
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.04 E-value=0.28 Score=48.29 Aligned_cols=130 Identities=20% Similarity=0.184 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC
Q 015537 216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295 (405)
Q Consensus 216 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 295 (405)
..+.+.++.++..+-..++ ....+.+.+.+++....+.|..|+-.+|..|..+.+...+ +...+-.++...+..-+.
T Consensus 60 dRIl~fla~fv~sl~q~d~--e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDK--EEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHHhhhccCc--hhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHh
Confidence 3455555555555554432 2336678888898888999999999999999999874332 222333466677888888
Q ss_pred CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (405)
Q Consensus 296 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (405)
+..+.|+..|+.+|+.+-. ++.. -+..+...+..+++..+++.||+.| |+||.
T Consensus 137 Drep~VRiqAv~aLsrlQ~-d~~d----ee~~v~n~l~~liqnDpS~EVRRaa---LsnI~ 189 (892)
T KOG2025|consen 137 DREPNVRIQAVLALSRLQG-DPKD----EECPVVNLLKDLIQNDPSDEVRRAA---LSNIS 189 (892)
T ss_pred ccCchHHHHHHHHHHHHhc-CCCC----CcccHHHHHHHHHhcCCcHHHHHHH---HHhhc
Confidence 8999999999999999862 2111 1224677788999888799999987 55554
No 215
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.94 E-value=1.1 Score=41.99 Aligned_cols=143 Identities=13% Similarity=0.128 Sum_probs=84.3
Q ss_pred hccHHHHHhhhcCCC-hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC------CCCcchHHHHHHHHhHhhc
Q 015537 242 SPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM------HPSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 242 ~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~v~~~a~~~l~nl~~ 314 (405)
..-..++-.-+..+| ..-+..|+..+..|+.........++ ...+..+|. +.++.-+..|+..++.++.
T Consensus 209 ddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~ 284 (370)
T PF08506_consen 209 DDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALAS 284 (370)
T ss_dssp HSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHB
T ss_pred cCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHh
Confidence 344445555554444 45677788888888765443332222 123333332 4566788899999999996
Q ss_pred CChh------------hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcc
Q 015537 315 GDDM------------QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMF 382 (405)
Q Consensus 315 ~~~~------------~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~ 382 (405)
.... ....+....++|-|. -..+..|-+|..|+|.+..+-..-+. +.+ .+++|.++..|.+.
T Consensus 285 k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L~~~ 358 (370)
T PF08506_consen 285 KGSTTKSGVTQTNELVDVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHLQSS 358 (370)
T ss_dssp SS--BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHTTSS
T ss_pred hhccccCCcccccccccHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHhCCC
Confidence 5421 223444555666665 12223678999999999999664332 222 35899999999876
Q ss_pred cccchhhhHHHHHHHHH
Q 015537 383 LHFFFGAIIYKLAIWLC 399 (405)
Q Consensus 383 ~~~~~~~~vr~~A~~al 399 (405)
. +-|+--|+++|
T Consensus 359 ~-----~vv~tyAA~~i 370 (370)
T PF08506_consen 359 S-----YVVHTYAAIAI 370 (370)
T ss_dssp ------HHHHHHHHHHH
T ss_pred C-----cchhhhhhhhC
Confidence 3 34888888775
No 216
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.92 E-value=1.4 Score=41.07 Aligned_cols=248 Identities=16% Similarity=0.106 Sum_probs=127.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHH-HHHHHHHHhhCCChhhHH
Q 015537 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVRE-QAVWALGNIAGDSPRCRD 195 (405)
Q Consensus 118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~-~a~~~L~nl~~~~~~~~~ 195 (405)
+..+++=|.++....+|..++--|+.-+.+ ++++..+..+|.+..++..+.. ++..+.. .++.+++-++.+.. .-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 566666666555468898888888888886 9999999999999999999954 3332433 33444444555544 334
Q ss_pred HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChh-hhhccHHHHHhhhc---------CCChHHHHHHHH
Q 015537 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD-QVSPALPALAHLIH---------SNDDEVLTDACW 265 (405)
Q Consensus 196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~l~~L~~ll~---------~~d~~v~~~a~~ 265 (405)
.+...+....++.++.-.....+..... .. ...... .....+..+...+. +....-+..++.
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~--~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall 172 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SS--RKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALL 172 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hh--hhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence 4444445555566663000000000000 00 000000 00011111111110 111122233333
Q ss_pred HHHHhc--------------cCChhHHHHHHhcCChHHHHHhcC----CC-------C-----cchHHHHHHHHhHhhcC
Q 015537 266 ALSYLS--------------DGTNDKIQAVIEAGVFPRLAEFLM----HP-------S-----PSVLIPALRTVGNIVTG 315 (405)
Q Consensus 266 ~l~~l~--------------~~~~~~~~~~~~~~~l~~L~~lL~----~~-------~-----~~v~~~a~~~l~nl~~~ 315 (405)
++-.++ ...+...+.+.+.|++..++..+. .. + ......++++|-|.+..
T Consensus 173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~ 252 (361)
T PF07814_consen 173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL 252 (361)
T ss_pred HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence 333331 111222345666788888888874 11 1 12455688888888766
Q ss_pred ChhhHHHHHhc--Cch-HHHHHhhcCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHH
Q 015537 316 DDMQTQCVIEY--QAL-PCLLNLLSGN--YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSII 375 (405)
Q Consensus 316 ~~~~~~~~~~~--g~l-~~L~~ll~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L 375 (405)
+.....+++.. +.+ ..+..++... .-..+...++.++.|++.++|.....+...++...+
T Consensus 253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~ 317 (361)
T PF07814_consen 253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQL 317 (361)
T ss_pred CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccch
Confidence 66544444433 233 2222222222 033445678899999998887776666655444443
No 217
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.23 Score=47.61 Aligned_cols=152 Identities=22% Similarity=0.306 Sum_probs=104.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 015537 122 VEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200 (405)
Q Consensus 122 i~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~ 200 (405)
-+++.+.+ +.++...+..++---.++. +.|++..|+.. .++.+.+++..|+-+||-+|.+++.
T Consensus 522 ~ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~-------- 585 (926)
T COG5116 522 NELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD-------- 585 (926)
T ss_pred HHHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------
Confidence 34555555 7777777776655433322 23678888887 6778999999999999999977653
Q ss_pred CChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHH
Q 015537 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA 280 (405)
Q Consensus 201 ~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~ 280 (405)
.+...+.+|..+.+..++.-.+.+|.-.|.+... ..++..|-.++.+...-|+..|+-+++.+.-...+....
T Consensus 586 -~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp 658 (926)
T COG5116 586 -LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP 658 (926)
T ss_pred -hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence 4556777887788999999999999999887521 234556677777888889999999999876443322111
Q ss_pred HHhcCChHHHHHhcCCC
Q 015537 281 VIEAGVFPRLAEFLMHP 297 (405)
Q Consensus 281 ~~~~~~l~~L~~lL~~~ 297 (405)
-+ .++...+.+.+...
T Consensus 659 ~v-~~I~k~f~~vI~~K 674 (926)
T COG5116 659 NV-KRIIKKFNRVIVDK 674 (926)
T ss_pred hH-HHHHHHHHHHHhhh
Confidence 11 14455566665443
No 218
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.83 E-value=0.42 Score=38.71 Aligned_cols=136 Identities=18% Similarity=0.114 Sum_probs=92.7
Q ss_pred CCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHH-hcCchHHH
Q 015537 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCL 332 (405)
Q Consensus 254 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~-~~g~l~~L 332 (405)
...++++..+.-++..+.+...+. ...-+-+.+-.++...+.+-...++.+++.+..+.++....++ ..|+++.+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~----~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREE----FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence 356778888888888875222222 2222335555666666666788899999999988887666555 67899999
Q ss_pred HHhhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhh-HHHHHHHHHh
Q 015537 333 LNLLS--GNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAI-IYKLAIWLCL 400 (405)
Q Consensus 333 ~~ll~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~-vr~~A~~al~ 400 (405)
..++. .. +..+...++-+|+.=| .+.. ....+..++++.|-++++...+. . +|--|...|+
T Consensus 92 ~~~~~~~~~-~~~~~~~~lell~aAc-~d~~-~r~~I~~~~~~~L~~~~~~~~~~----~~ir~~A~v~L~ 155 (157)
T PF11701_consen 92 LPLASRKSK-DRKVQKAALELLSAAC-IDKS-CRTFISKNYVSWLKELYKNSKDD----SEIRVLAAVGLC 155 (157)
T ss_dssp HHHHH-CTS--HHHHHHHHHHHHHHT-TSHH-HHHCCHHHCHHHHHHHTTTCC-H----H-CHHHHHHHHH
T ss_pred HHHHhcccC-CHHHHHHHHHHHHHHH-ccHH-HHHHHHHHHHHHHHHHHccccch----HHHHHHHHHHHh
Confidence 99999 55 7777777777666543 4444 56666778889999988665444 3 6777776665
No 219
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.79 E-value=1.1 Score=44.44 Aligned_cols=107 Identities=18% Similarity=0.136 Sum_probs=80.1
Q ss_pred cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 015537 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (405)
Q Consensus 115 ~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 194 (405)
.|++..++....+.+ ..+++.++.+|..+.... ..++..+-+++...+..-+.+..+.|+.+|+.+|+.+-++...-
T Consensus 84 ~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKD-KKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHHhcccCcc-hhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence 345666666666666 799999999999988853 34444455577788888888889999999999999997543211
Q ss_pred HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (405)
Q Consensus 195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~ 228 (405)
+..+...+..++.++++.+|++.++..+.+
T Consensus 161 ----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred ----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 334667888888899999999988765543
No 220
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.75 E-value=1.9 Score=43.28 Aligned_cols=237 Identities=17% Similarity=0.165 Sum_probs=127.8
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhc-cCCCCchHHHHhcC---cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLS-IERSPPIEEVIRSG---VVPRFVEFLLREDYPQLQFEAAWALTNIASGTS 149 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s-~~~~~~~~~~~~~g---~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~ 149 (405)
.+-.|++.|..-+.+........+.. .+ .......+.+...| .+..+.+++.+..-+. .+|+..+..+...-.
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~--~ea~~~~~~~~~~~~ 388 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP--LEAAQLLAVLPHTAR 388 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhh
Confidence 45666777766555555444444432 11 00012233444444 4556666676654221 223333333222111
Q ss_pred hhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CChhhHHHHHhcCChHHHHHhhh---CCCchhH
Q 015537 150 EHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLN---GQPKLSM 218 (405)
Q Consensus 150 ~~~~~~~~~g~i~~L~~lL~~----~~~~i~~~a~~~L~nl~~----~~~~~~~~i~~~~~i~~L~~~l~---~~~~~~~ 218 (405)
.-.. ..+..+..++.+ ..+.++..|+-+++++.. +.+.+...+ ....++.+...|. ...+..-
T Consensus 389 ~Pt~-----~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~ 462 (574)
T smart00638 389 YPTE-----EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFV-LEELLKYLHELLQQAVSKGDEEE 462 (574)
T ss_pred cCCH-----HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhh-HHHHHHHHHHHHHHHHhcCCchh
Confidence 1111 246667777765 356788888888888763 222111111 1224555665553 2345556
Q ss_pred HHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhc-C--CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC
Q 015537 219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-S--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295 (405)
Q Consensus 219 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~-~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 295 (405)
+..++.+|.|+-.. ..++.+..++. . ....++..|+|+|..++...+..++ +.++++..
T Consensus 463 ~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~ 524 (574)
T smart00638 463 IQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYL 524 (574)
T ss_pred eeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHc
Confidence 67778888877654 34555555554 2 2478999999999998876665443 56666664
Q ss_pred C--CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHH
Q 015537 296 H--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE 347 (405)
Q Consensus 296 ~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~ 347 (405)
+ .++++|..|+..|-. + ++.. ..+..+...+...++..|+..
T Consensus 525 n~~e~~EvRiaA~~~lm~--t-~P~~-------~~l~~ia~~l~~E~~~QV~sf 568 (574)
T smart00638 525 NRAEPPEVRMAAVLVLME--T-KPSV-------ALLQRIAELLNKEPNLQVASF 568 (574)
T ss_pred CCCCChHHHHHHHHHHHh--c-CCCH-------HHHHHHHHHHhhcCcHHHHHH
Confidence 4 456888888776632 2 2222 235556777766645555443
No 221
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.74 E-value=1.4 Score=42.24 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=113.2
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCC---HHHHHHHHHHHHHHhcCCch
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDY---PQLQFEAAWALTNIASGTSE 150 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~---~~~~~~a~~~L~ni~~~~~~ 150 (405)
....+.+.+.+++...+..|+..+..+ |.+ .....+++...++..|.+++.++.. .++...++.++..+....-
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sl-s~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv- 160 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSL-SLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV- 160 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhc-ccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence 357888899999999999999888887 433 4567889999999999999988762 3455555555555544321
Q ss_pred hHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537 151 HTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (405)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~ 228 (405)
.....+...+|.....+.+- .+..+...|+..|-++...++..++.+.+.--+..|+..+ ...+..+...+...+..
T Consensus 161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA 239 (713)
T ss_pred eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 11112222333333333322 4667788899999999888887888888888899999999 77788888888888888
Q ss_pred hhcCCCCC
Q 015537 229 FCRGKPQP 236 (405)
Q Consensus 229 l~~~~~~~ 236 (405)
+....|..
T Consensus 240 l~~~a~~~ 247 (713)
T KOG2999|consen 240 LFRKAPDD 247 (713)
T ss_pred HHhhCChH
Confidence 87765443
No 222
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.71 E-value=2.6 Score=36.66 Aligned_cols=141 Identities=23% Similarity=0.206 Sum_probs=94.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 015537 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197 (405)
Q Consensus 118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i 197 (405)
++.|+.-+....++..+...+..|..++..+.... .-++..|..+...+.......+...+..+...++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 45555545444448999999999999999741211 1245666677777777776677777777765544221
Q ss_pred HhcCChHHHHHhh---------hCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhh-cCCChHHHHHHHHHH
Q 015537 198 LSQGGLVPLLAQL---------NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSNDDEVLTDACWAL 267 (405)
Q Consensus 198 ~~~~~i~~L~~~l---------~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l 267 (405)
+.+..++..+ ..+...+.......++..+|...|. .-..+++.+..++ ++.++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2344444441 1223455666667899999998766 3346777888888 778888999999999
Q ss_pred HHhccC
Q 015537 268 SYLSDG 273 (405)
Q Consensus 268 ~~l~~~ 273 (405)
..++..
T Consensus 147 ~~Lc~~ 152 (234)
T PF12530_consen 147 APLCEA 152 (234)
T ss_pred HHHHHH
Confidence 999843
No 223
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.69 E-value=0.27 Score=49.73 Aligned_cols=172 Identities=18% Similarity=0.171 Sum_probs=94.6
Q ss_pred hHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC----CChHHHHHHHHHHHHhccCChhH-
Q 015537 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----NDDEVLTDACWALSYLSDGTNDK- 277 (405)
Q Consensus 203 i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~~~~~~- 277 (405)
+..+.+++.. ....-.. +.+.|..+......+.. ..+..+..++++ .++.+...++.+++.+.......
T Consensus 397 v~~i~~~I~~-~~~~~~e-a~~~l~~l~~~~~~Pt~----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~ 470 (618)
T PF01347_consen 397 VKFIKDLIKS-KKLTDDE-AAQLLASLPFHVRRPTE----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNS 470 (618)
T ss_dssp HHHHHHHHHT-T-S-HHH-HHHHHHHHHHT-----H----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHc-CCCCHHH-HHHHHHHHHhhcCCCCH----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecc
Confidence 4455566633 2222222 33344444443222332 344555555553 34667777777777775321111
Q ss_pred --------HHHHHhcCChHHHHHhcC----CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC--Cchh
Q 015537 278 --------IQAVIEAGVFPRLAEFLM----HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN--YKKS 343 (405)
Q Consensus 278 --------~~~~~~~~~l~~L~~lL~----~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~~ 343 (405)
....+...+++.+...|. ..+..-+..++++|||+.. + ..++.|..++... .+..
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~ 539 (618)
T PF01347_consen 471 DSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHF 539 (618)
T ss_dssp ----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HH
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccchH
Confidence 011222345666666654 4566778889999999853 2 3466677766654 3678
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537 344 IKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
+|..|.|+|..++...++.+. +.|+.++.+... +++||-.|..+|..+
T Consensus 540 ~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~e---~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 540 IRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTTE---DPEVRIAAYLILMRC 587 (618)
T ss_dssp HHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TTS----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCCC---ChhHHHHHHHHHHhc
Confidence 999999999999777776554 355666655433 368999999888654
No 224
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.68 E-value=2.5 Score=36.34 Aligned_cols=196 Identities=12% Similarity=0.076 Sum_probs=125.5
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHH-hcCcHHHHHHHhcC-------C----CCHHHHHHHHHHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLR-------E----DYPQLQFEAAWAL 141 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~l~~Li~lL~~-------~----~~~~~~~~a~~~L 141 (405)
.+..++-.+.+ +..+..|+..+.+-.... ..-...+. .-|....+.+-.-. + ..+.=...|+..|
T Consensus 27 k~~~~i~~l~~--~p~rE~aL~ELskkre~~-~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~Ll 103 (293)
T KOG3036|consen 27 KAYQLILSLVS--PPTREMALLELSKKREPF-PDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALL 103 (293)
T ss_pred chhhHHHHhhC--CchHHHHHHHHHHhccCC-ccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHH
Confidence 45566555543 456666776666553211 11112222 33544444432211 1 1123345666666
Q ss_pred HHHhcCCchhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhhCCCc
Q 015537 142 TNIASGTSEHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPK 215 (405)
Q Consensus 142 ~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~L~~~l~~~~~ 215 (405)
--++++ ++.+..+++..+--+|-.+|.. +.+.++-.++++|+.+... +.++-..++..++++..++.+ ..++
T Consensus 104 QcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim-e~GS 181 (293)
T KOG3036|consen 104 QCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM-ESGS 181 (293)
T ss_pred HHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH-hccc
Confidence 667777 8999999998876666667754 5678999999999999854 455666778889999999999 7777
Q ss_pred hhHHHHHHHHHHHhhcCCCCC--------ChhhhhccHH-HHHhhhcCCChHHHHHHHHHHHHhccCC
Q 015537 216 LSMLRNATWTLSNFCRGKPQP--------PFDQVSPALP-ALAHLIHSNDDEVLTDACWALSYLSDGT 274 (405)
Q Consensus 216 ~~~~~~a~~~l~~l~~~~~~~--------~~~~~~~~l~-~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (405)
+..+..++..+..+-.++..- .+..+...+. .+.++.+.+++.....++++..+|+++.
T Consensus 182 elSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 182 ELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 788888888887766654221 1122233343 3344556678999999999999998655
No 225
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.65 E-value=0.67 Score=44.74 Aligned_cols=104 Identities=16% Similarity=0.070 Sum_probs=77.5
Q ss_pred CChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHH
Q 015537 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQ 362 (405)
Q Consensus 285 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~ 362 (405)
|++..++.-+.+++..|+..++.+|+-++..-.+ ++..+-.|+++.|..-+-+. .+.||.+|..+|+.+-. ++++.
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccCChHH
Confidence 6677888888999999999999999888754333 33455568888888888787 89999999999999964 34442
Q ss_pred HHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537 363 IQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLV 401 (405)
Q Consensus 363 ~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n 401 (405)
.+...|..++..+... .||+.|..-|.+
T Consensus 169 -------~~~n~l~~~vqnDPS~----EVRr~allni~v 196 (885)
T COG5218 169 -------RIVNLLKDIVQNDPSD----EVRRLALLNISV 196 (885)
T ss_pred -------HHHHHHHHHHhcCcHH----HHHHHHHHHeee
Confidence 3344677777666444 799988776654
No 226
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=94.63 E-value=4.7 Score=39.18 Aligned_cols=249 Identities=15% Similarity=0.138 Sum_probs=133.4
Q ss_pred ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcH-HHHHHHhcCCCCH---HHHHHHHHHHHHHhcCCchhHHHHHhCCCh
Q 015537 86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV-PRFVEFLLREDYP---QLQFEAAWALTNIASGTSEHTKVVIDHGAV 161 (405)
Q Consensus 86 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l-~~Li~lL~~~~~~---~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i 161 (405)
..+.+..++..+..+.... ... .+.. ..+...+.....+ ..+.+|+.+|+ .+..+. ...+.++.
T Consensus 42 p~e~R~~~~~ll~~~i~~~-~~~------~~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT---~~Grdi--~~~~~~i~ 109 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQ-DSS------SGLMRAEFFRDISDPSNDDDFDLRLEALIALT---DNGRDI--DFFEYEIG 109 (464)
T ss_pred CHHHHHHHHHHHHHHHHcc-ccc------cHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH---cCCcCc--hhcccchH
Confidence 3567787888887776554 221 1111 2233334433223 34555555554 443333 23455677
Q ss_pred HHHHHhhCC---------------------------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC
Q 015537 162 PIFVKLLYS---------------------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP 214 (405)
Q Consensus 162 ~~L~~lL~~---------------------------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~ 214 (405)
+.|...|.. .+.......+..+.|+...+...-+.-.-.+.+..++.+..+..
T Consensus 110 ~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts 189 (464)
T PF11864_consen 110 PFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTS 189 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccC
Confidence 777766631 12233445555666666544322121112234555555554455
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc
Q 015537 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294 (405)
Q Consensus 215 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL 294 (405)
+......++..+-.+.... ..+......++..|....... +....+-.++.+|+...... ..+..|..+|
T Consensus 190 ~~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL 259 (464)
T PF11864_consen 190 SEDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDIL 259 (464)
T ss_pred cHHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHH
Confidence 5555566666666665542 222222334444444443222 55566666788887544332 1246777777
Q ss_pred CC------CCcchHHHHHHHHhHhhcCChhhHHHHHhcC---chHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 295 MH------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ---ALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 295 ~~------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g---~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
.+ .+..+...|+..++.+..+.......-+... +++.+...++.+ ++.+--++.-.+.++..
T Consensus 260 ~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 260 RSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLLD 330 (464)
T ss_pred cccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHHh
Confidence 32 2345667899999998877733222222222 788888888887 77777777777777763
No 227
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.60 E-value=0.94 Score=46.10 Aligned_cols=192 Identities=21% Similarity=0.195 Sum_probs=118.6
Q ss_pred HHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChH--HHHHhhhCCCch
Q 015537 140 ALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV--PLLAQLNGQPKL 216 (405)
Q Consensus 140 ~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~--~L~~~l~~~~~~ 216 (405)
+|.+++..+++....+++.|++..+...++. .+.+++..++..++|++...+ .+........+. .+-.++.+..+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~-~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLE-LRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 7778889999999999999999999999986 577899999999999995443 222222111111 223344345555
Q ss_pred hHHHHHHHHHHHhhcCCCC-CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-
Q 015537 217 SMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL- 294 (405)
Q Consensus 217 ~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL- 294 (405)
+.-..++..|+.+....+. .....- +.+......++........ ......-+.+.+..++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r---------------~~~~~~l~e~i~~~~~~~~---~~~~~~~f~~~~~~il~ 634 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFR---------------NSVNELLVEAISRWLTSEI---RVINDRSFFPRILRILR 634 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccch---------------HHHHHHHHHHhhccCccce---eehhhhhcchhHHHHhc
Confidence 7888888888888776432 111111 1122222222222221111 1111111222144444
Q ss_pred CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHH
Q 015537 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACW 350 (405)
Q Consensus 295 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~ 350 (405)
.+..+..+..|+|++.+++..+++....+.+.|+++.+.++-.......++.++--
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVL 690 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHH
Confidence 34566788999999999999888888888899999988887766533344444433
No 228
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.40 E-value=0.3 Score=40.85 Aligned_cols=110 Identities=10% Similarity=0.154 Sum_probs=76.0
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHH-hcCCchhHHHHHhCCChHHHHHhhCC---------CCHHHHHHHHHHHHHh
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNI-ASGTSEHTKVVIDHGAVPIFVKLLYS---------PSDDVREQAVWALGNI 186 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni-~~~~~~~~~~~~~~g~i~~L~~lL~~---------~~~~i~~~a~~~L~nl 186 (405)
-...+++.+.+..... ..+.-|... -..+..+.+.+++.||+..|+.+|.. .+..+...++.||..|
T Consensus 67 ~p~~~i~~L~~~~~~~---~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS---KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHTTT--HH---HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccCccH---HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 3566777776655221 233333332 22335678889899999999998863 4567889999999999
Q ss_pred hCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhh
Q 015537 187 AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (405)
Q Consensus 187 ~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~ 230 (405)
..........+...+++..|+..| .+++..++..++..|..+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 876665545555577888888888 7889999999999999887
No 229
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.11 E-value=11 Score=41.16 Aligned_cols=81 Identities=11% Similarity=0.062 Sum_probs=54.8
Q ss_pred hHHHHHHHHhHhhcCCh-----------hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 015537 301 VLIPALRTVGNIVTGDD-----------MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV 369 (405)
Q Consensus 301 v~~~a~~~l~nl~~~~~-----------~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 369 (405)
.....+.++|-++...+ .+....+..+++..|.-+..+. +..+|..|.-.+|.+|..+|. ++.+.
T Consensus 1188 ~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~-~~~lR~~al~~Lg~~ci~hp~---l~~~~ 1263 (1692)
T KOG1020|consen 1188 KLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK-DGELRRKALINLGFICIQHPS---LFTSR 1263 (1692)
T ss_pred HHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhCch---hhhhH
Confidence 44567888888886221 1112244557788888888888 899999999999999986554 44555
Q ss_pred CcHHHHHHHHhccccc
Q 015537 370 HAFSIIVAFFFMFLHF 385 (405)
Q Consensus 370 ~~i~~L~~lL~~~~~~ 385 (405)
.+...+..+|.+....
T Consensus 1264 ~v~nly~~ila~~n~~ 1279 (1692)
T KOG1020|consen 1264 EVLNLYDEILADDNSD 1279 (1692)
T ss_pred HHHHHHHHHHhhhccc
Confidence 6666666666554433
No 230
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.10 E-value=1.8 Score=36.22 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=93.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
++.+++...+++..++..|+..+.-++...=..|.+ .+|.++.+..+++ +.++..|...+..+....+.....
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence 678888889999999999999999887654233332 5999999999988 999999999999998764444333
Q ss_pred HHhCCChHHHHHhhC----CCCHHH---HHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC-------chhHHH
Q 015537 155 VIDHGAVPIFVKLLY----SPSDDV---REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-------KLSMLR 220 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~----~~~~~i---~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~-------~~~~~~ 220 (405)
-...| +..-..+-. +..... ....+..+..+...+...|..+ +..|++.+.... ...-..
T Consensus 83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~ 156 (187)
T PF12830_consen 83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLD 156 (187)
T ss_pred HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHH
Confidence 33323 322222221 111111 5556666777777666666654 445666663321 344455
Q ss_pred HHHHHHHHhhcC
Q 015537 221 NATWTLSNFCRG 232 (405)
Q Consensus 221 ~a~~~l~~l~~~ 232 (405)
.+.++..||+.-
T Consensus 157 ~~~Fla~nLA~l 168 (187)
T PF12830_consen 157 FLLFLAENLATL 168 (187)
T ss_pred HHHHHHHHHhcC
Confidence 666666666654
No 231
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.04 E-value=1.6 Score=41.22 Aligned_cols=133 Identities=15% Similarity=0.142 Sum_probs=96.0
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCc---hhHHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhCCC
Q 015537 121 FVEFLLREDYPQLQFEAAWALTNIASGTS---EHTKVVIDHGAVPIFVKLLYS-------PSDDVREQAVWALGNIAGDS 190 (405)
Q Consensus 121 Li~lL~~~~~~~~~~~a~~~L~ni~~~~~---~~~~~~~~~g~i~~L~~lL~~-------~~~~i~~~a~~~L~nl~~~~ 190 (405)
+..++...+ +.-|+.|+...+..+.+.+ ..++.+.+.-+.+.+-++|.+ ++.-.+..++..|..+|.+.
T Consensus 16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 555666555 6789999999999988643 356678888889999999976 23446778888899998765
Q ss_pred hhh-HHHHHhcCChHHHHHhhhCCCchh------HHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCC
Q 015537 191 PRC-RDLVLSQGGLVPLLAQLNGQPKLS------MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND 256 (405)
Q Consensus 191 ~~~-~~~i~~~~~i~~L~~~l~~~~~~~------~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d 256 (405)
+-. ...++ ..|+.|+..+.+..|+. +...+-.+|..++...+........|.++.+.++-.-++
T Consensus 95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~ 165 (698)
T KOG2611|consen 95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPD 165 (698)
T ss_pred hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCC
Confidence 422 12222 36888888886655544 889999999999998665555666899998887654433
No 232
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.97 E-value=1.1 Score=43.26 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=82.2
Q ss_pred hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc--C
Q 015537 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT--G 315 (405)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~--~ 315 (405)
...+.+.+..++..+.+.|..|+..++..|+.+.+.-.+ ++..+-.|++..|..-+-+..+.|+..|+.+|+.+-. +
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 566788999999999999999999999999998865433 3345556788888888888899999999999988753 2
Q ss_pred ChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (405)
Q Consensus 316 ~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (405)
+++. .....|+.+++..++..||+.| +.|+.
T Consensus 165 neen-------~~~n~l~~~vqnDPS~EVRr~a---llni~ 195 (885)
T COG5218 165 NEEN-------RIVNLLKDIVQNDPSDEVRRLA---LLNIS 195 (885)
T ss_pred ChHH-------HHHHHHHHHHhcCcHHHHHHHH---HHHee
Confidence 2221 2344678888877688899887 45554
No 233
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.85 E-value=0.83 Score=38.24 Aligned_cols=124 Identities=12% Similarity=0.094 Sum_probs=82.1
Q ss_pred CChHHHHHHHHHHHHhccCChhHHHHHHhc----------------CChHHHHHhcCC------CCcchHHHHHHHHhHh
Q 015537 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEA----------------GVFPRLAEFLMH------PSPSVLIPALRTVGNI 312 (405)
Q Consensus 255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~----------------~~l~~L~~lL~~------~~~~v~~~a~~~l~nl 312 (405)
.+......++..|+|++..+... ..+++. ..+..|+.++.. +...-......++.|+
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 34445566777777877644332 222222 245666666643 2334556678888999
Q ss_pred hcCChhhHHHHHhcC--c--hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhcc
Q 015537 313 VTGDDMQTQCVIEYQ--A--LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH---VHAFSIIVAFFFMF 382 (405)
Q Consensus 313 ~~~~~~~~~~~~~~g--~--l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~lL~~~ 382 (405)
+.. +..++.+++.. . +..|+.++.+. +..-|..++.+|-|+|-....+ ..+++ .+++|.|+--|...
T Consensus 86 S~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 86 SQL-PEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAGP 159 (192)
T ss_pred cCC-HHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhccCC
Confidence 764 44566666543 4 77888888888 7888888999999999877776 44543 58888888777643
No 234
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.71 E-value=6.6 Score=37.41 Aligned_cols=259 Identities=14% Similarity=0.103 Sum_probs=132.4
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc--hhHHHHH
Q 015537 79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS--EHTKVVI 156 (405)
Q Consensus 79 ~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~--~~~~~~~ 156 (405)
.+...+++...+..|+..|.+.+++- |..-.-...-.+..++.-|.++.+.+++.++..+|+.+...-. .....++
T Consensus 264 a~ka~dp~a~~r~~a~r~L~~~as~~--P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l 341 (533)
T KOG2032|consen 264 ANKATDPSAKSRGMACRGLGNTASGA--PDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL 341 (533)
T ss_pred HHhccCchhHHHHHHHHHHHHHhccC--cHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch
Confidence 33344566788889999999998763 2211111223455566555555558999999999998876411 1111111
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHh--cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 157 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~--~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
.+.-.+..+..+.+++++..+...++.++... ...++.+.+ .+...+++-.+ +++++.+.+.+ ......|.
T Consensus 342 --~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl-~d~~p~va~AC-r~~~~~c~-- 415 (533)
T KOG2032|consen 342 --NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHL-QDPNPYVARAC-RSELRTCY-- 415 (533)
T ss_pred --hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeee-CCCChHHHHHH-HHHHHhcC--
Confidence 23445666778899999999999888887321 112233321 22344555555 66666555443 33333332
Q ss_pred CCCChhhhhccHHHHHhhhcCCCh-HHH-HHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537 234 PQPPFDQVSPALPALAHLIHSNDD-EVL-TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (405)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~d~-~v~-~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n 311 (405)
|.-......++++... ..+. ..+ -+.-|+ ..+....++...... ....-++++.-+.++..+...-++
T Consensus 416 p~l~rke~~~~~q~~l----d~~~~~~q~Fyn~~c-~~L~~i~~d~l~~~~-----t~~~~~f~sswe~vr~aavl~t~~ 485 (533)
T KOG2032|consen 416 PNLVRKELYHLFQESL----DTDMARFQAFYNQWC-IQLNHIHPDILMLLL-----TEDQHIFSSSWEQVREAAVLKTTR 485 (533)
T ss_pred chhHHHHHHHHHhhhh----HHhHHHHHHHHHHHH-HHHhhhCHHHHHHHH-----HhchhheecchHHHHHHHHHHHHH
Confidence 2222222223333211 1111 110 011121 122222333222221 111222333334677777777777
Q ss_pred hhcCChhhHHHHHh-cCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537 312 IVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (405)
Q Consensus 312 l~~~~~~~~~~~~~-~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (405)
..-+-........+ ..+...+..+..++ -+++++.+.-++.-+.
T Consensus 486 ~vd~l~~~~c~~~d~~qL~~~ls~l~~dp-~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 486 SVDSLVRAACSSADGLQLRSSLSTLWRDP-RPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHhHHHHHHHhhHHHHHHHHHHHccCC-CchhHHHHHHHhhhHh
Confidence 76443333222222 22445555566666 8899998888887654
No 235
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=93.66 E-value=4.7 Score=38.64 Aligned_cols=264 Identities=12% Similarity=0.076 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCC----ChhhHHHHHhcCChHH
Q 015537 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGD----SPRCRDLVLSQGGLVP 205 (405)
Q Consensus 131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~----~~~~~~~i~~~~~i~~ 205 (405)
+-+-....+++.-+-.+-......++. ..+..+....++ .+|..-+....+++.+... ++... .-++...+++
T Consensus 44 eylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v-~~~E~~L~P~ 121 (435)
T PF03378_consen 44 EYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAV-SQFEEALFPP 121 (435)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHH-HHHHHHHHHH
Confidence 444444445544443332333333322 233333334444 3667666666666666432 22211 1234456777
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHhhcCCC-CCChhhhhccHHHHHhhhc-CCChHHHHHHHHHHHHhccCChhHHHHHHh
Q 015537 206 LLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIE 283 (405)
Q Consensus 206 L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~ 283 (405)
+...| ...-.+..-++...++.|.+..+ ...-.....++|.|+.-.- .....+ -...+.|..+....+... ..
T Consensus 122 f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i---~~ 196 (435)
T PF03378_consen 122 FQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFI---VA 196 (435)
T ss_dssp HHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG------
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhh---cc
Confidence 77777 54445677777777777776654 2222344556665543211 111112 233334443333332221 22
Q ss_pred c----CChHHHHHhcCCCCcchHHHHHHHHhHhhcCChh-hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-
Q 015537 284 A----GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM-QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA- 357 (405)
Q Consensus 284 ~----~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~- 357 (405)
. +++..+-.++.+...+ ..+...|..+...-+. ..+..+ ..++..+..-|+++...+..+.-+..++.++.
T Consensus 197 ~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~ 273 (435)
T PF03378_consen 197 NNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIK 273 (435)
T ss_dssp -S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHH
Confidence 2 2334444566655433 3477777777765543 222122 23556666666655466666666666666654
Q ss_pred CCHHHHHHHHH---hCcHHHHHHH--HhcccccchhhhHHHHHHHHHhhhccC
Q 015537 358 GNREQIQVIMH---VHAFSIIVAF--FFMFLHFFFGAIIYKLAIWLCLVTCCE 405 (405)
Q Consensus 358 ~~~~~~~~l~~---~~~i~~L~~l--L~~~~~~~~~~~vr~~A~~al~n~~~~ 405 (405)
.+++..-..++ .|++..++.- +.....- .++.=||-++..+.++-||
T Consensus 274 ~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~-~~~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 274 YGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKV-SGPIERKICAVGLTKLLCE 325 (435)
T ss_dssp H-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG---SHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhc-CCcchhhHHHHHHHHHHhc
Confidence 34554555543 6666666652 3332221 2334578888888886664
No 236
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.57 E-value=7.4 Score=38.85 Aligned_cols=184 Identities=16% Similarity=0.096 Sum_probs=117.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-Cc----hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 015537 119 PRFVEFLLREDYPQLQFEAAWALTNIASG-TS----EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193 (405)
Q Consensus 119 ~~Li~lL~~~~~~~~~~~a~~~L~ni~~~-~~----~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~ 193 (405)
|.+..-|+..+ ..+|..|+..+.+.--- ++ +..+.+++ .-...+..+|+++-+.++..|+..+..+.+. +
T Consensus 177 p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---f 251 (1005)
T KOG1949|consen 177 PILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSK---F 251 (1005)
T ss_pred HHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHH---H
Confidence 44445566677 79999999999986432 12 33444554 3367788999999999999998888777632 1
Q ss_pred HHHHHhcCC----hHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHH
Q 015537 194 RDLVLSQGG----LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSY 269 (405)
Q Consensus 194 ~~~i~~~~~----i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~ 269 (405)
-. ++-..+ +..+..-+..++..+++-.+...|..+..++ ........++|.+-..++++...|+.++...|..
T Consensus 252 We-~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 252 WE-MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred HH-HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence 11 112222 3333444445666788989999998888774 2333446678888888888889999999888887
Q ss_pred hccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhh
Q 015537 270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (405)
Q Consensus 270 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 313 (405)
+-+......-.+ --++.++.-|..++..+....+..|-+.+
T Consensus 329 ik~vra~~f~~I---~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 329 IKAVRAAKFWKI---CPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred HHhhhhhhhhcc---ccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 744322211111 12345566666666666555555555555
No 237
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.40 E-value=5.3 Score=35.39 Aligned_cols=218 Identities=15% Similarity=0.118 Sum_probs=122.9
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 015537 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVL 198 (405)
Q Consensus 121 Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~ 198 (405)
|=..|++++ +.+|..|+.+|+.+...-+... +...-+..|+.++.+ .+......++.++..+...........
T Consensus 4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~- 78 (262)
T PF14500_consen 4 LGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA- 78 (262)
T ss_pred hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH-
Confidence 445677777 8999999999999877644321 222224455554433 355555555777777763332111111
Q ss_pred hcCChHHHHHhhh-CCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC-CChHHHHHHHHHHHHhccCChh
Q 015537 199 SQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTND 276 (405)
Q Consensus 199 ~~~~i~~L~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~ 276 (405)
...+..+.+... +......+..+...+..+..+........-...+..+++.+.. .||.-..-+...+..+...-+.
T Consensus 79 -~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 79 -VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred -HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 112223332221 1223456777777777777664221222224566666777665 4888888887777766544321
Q ss_pred HHHHHHhcCChHHHHHhcC---------C-CCc--chHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhH
Q 015537 277 KIQAVIEAGVFPRLAEFLM---------H-PSP--SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI 344 (405)
Q Consensus 277 ~~~~~~~~~~l~~L~~lL~---------~-~~~--~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v 344 (405)
....+.+.+.+. . +++ -.+..--..|.+..+.++.... -.+|.|++=|.++ .+.+
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~-~~~~ 224 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDST-SPSV 224 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCC-CcHH
Confidence 122333444332 1 122 1233334445454455554333 5688999999999 8889
Q ss_pred HHHHHHHHHHHhc
Q 015537 345 KKEACWTVSNITA 357 (405)
Q Consensus 345 ~~~a~~~L~nl~~ 357 (405)
|..+.-+|..++.
T Consensus 225 K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 225 KLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
No 238
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.38 E-value=0.38 Score=47.27 Aligned_cols=137 Identities=13% Similarity=0.108 Sum_probs=95.2
Q ss_pred ccHHHHHhhhcC----CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC-CCCcchHHHHHHHHhHhhcCCh
Q 015537 243 PALPALAHLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDD 317 (405)
Q Consensus 243 ~~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~ 317 (405)
..-|.+.+...+ +|++++..|..+|..+..-+.+... .-+|.++..+. +++|.++..|+..+|.++-.-.
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 344555555544 6899999999999988665554433 33688888885 8999999999999999886544
Q ss_pred hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHH
Q 015537 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIW 397 (405)
Q Consensus 318 ~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~ 397 (405)
...+ ..-.+|.+-|.+. +..||+.+..++.++.-...- --.|-++.+..+|...+. .|...|..
T Consensus 967 ~~~d-----e~t~yLyrrL~De-~~~V~rtclmti~fLilagq~-----KVKGqlg~ma~~L~deda-----~Isdmar~ 1030 (1128)
T COG5098 967 TTAD-----EHTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQL-----KVKGQLGKMALLLTDEDA-----EISDMARH 1030 (1128)
T ss_pred hhhH-----HHHHHHHHHhcch-hhHHHHHHHHHHHHHHHccce-----eeccchhhhHhhccCCcc-----hHHHHHHH
Confidence 3333 2345678888888 899999999999998743221 125777777777765432 36666555
Q ss_pred HHh
Q 015537 398 LCL 400 (405)
Q Consensus 398 al~ 400 (405)
...
T Consensus 1031 fft 1033 (1128)
T COG5098 1031 FFT 1033 (1128)
T ss_pred HHH
Confidence 443
No 239
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.36 E-value=3.7 Score=42.80 Aligned_cols=295 Identities=18% Similarity=0.160 Sum_probs=163.3
Q ss_pred hhcCHHHHHH-hhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--
Q 015537 71 KLENLPVMVA-GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG-- 147 (405)
Q Consensus 71 ~~~~l~~l~~-~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~-- 147 (405)
+++++..+-. +|++++.++|...+..+.++.+.+ .++....-+.-.+|.|+.-+..-. ..+|...+.+|-.-...
T Consensus 464 dLeAvqmLqdiFLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvn 541 (2799)
T KOG1788|consen 464 DLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVN 541 (2799)
T ss_pred chHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhc
Confidence 4444444444 566788999999999999887643 333333335567888887776655 46666555555332211
Q ss_pred -CchhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHH
Q 015537 148 -TSEHTKVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (405)
Q Consensus 148 -~~~~~~~~~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~ 225 (405)
-|+ + -+-.|+-+|+.+ ...+....+.....+...+..+++.+.+-|.++.|-..+.+++-..--... ..
T Consensus 542 cvPe-q-------ELlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqy-sg 612 (2799)
T KOG1788|consen 542 CVPE-Q-------ELLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQY-SG 612 (2799)
T ss_pred cCcH-H-------HHHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchh-hh
Confidence 011 1 122466677765 456666777777777777888889999999988887777432100000000 01
Q ss_pred HHHhhcCCC-CCChhhh---hccHHHHHhhhcCC---ChH--H---HHHHHHHHHHhccCChhHHHHHHhcCChHHHHHh
Q 015537 226 LSNFCRGKP-QPPFDQV---SPALPALAHLIHSN---DDE--V---LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293 (405)
Q Consensus 226 l~~l~~~~~-~~~~~~~---~~~l~~L~~ll~~~---d~~--v---~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l 293 (405)
++.....+| ...+... ...+-.--.+..+. ++- + ..-.-.+|..+..++.++.+.+.++.++..++.+
T Consensus 613 vsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpf 692 (2799)
T KOG1788|consen 613 VSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPF 692 (2799)
T ss_pred HHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEe
Confidence 111222221 1111110 01110001112221 111 0 0111235666777788888888888888999888
Q ss_pred cCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC-----------chhHHHHHHHHHHHHhcCCHHH
Q 015537 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-----------KKSIKKEACWTVSNITAGNREQ 362 (405)
Q Consensus 294 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~-----------~~~v~~~a~~~L~nl~~~~~~~ 362 (405)
+- +++-+...++++..+...++.+.. +.-+-.+++.|+++. ..........++..+...+...
T Consensus 693 li--ndehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsa 766 (2799)
T KOG1788|consen 693 LI--NDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSA 766 (2799)
T ss_pred ee--chHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchh
Confidence 83 445678888888888876665322 112334555555521 1234455556666665433343
Q ss_pred HHHHHHhCcHHHHHHHHhcc
Q 015537 363 IQVIMHVHAFSIIVAFFFMF 382 (405)
Q Consensus 363 ~~~l~~~~~i~~L~~lL~~~ 382 (405)
....-+++++..|...|...
T Consensus 767 qrvFgeatGFslLlttLhtf 786 (2799)
T KOG1788|consen 767 QRVFGEATGFSLLLTTLHTF 786 (2799)
T ss_pred eeehhccccHHHHHHHHHHh
Confidence 34555788888887777543
No 240
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.33 E-value=4.3 Score=40.39 Aligned_cols=201 Identities=14% Similarity=0.137 Sum_probs=117.4
Q ss_pred hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH---HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 015537 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDVREQAVWALGN 185 (405)
Q Consensus 109 ~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~---~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~n 185 (405)
...-++.|++..++.---....+.+....-.+|+..+.. ...++ .++-.=.=|.|.+-|+..|..++.+|+..+.+
T Consensus 122 L~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hq-kk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~ 200 (1005)
T KOG1949|consen 122 LLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQ-KKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVE 200 (1005)
T ss_pred hHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHH
Confidence 445567777877765432222122222222344444332 11111 11111122455566677899999999999999
Q ss_pred hhC-CCh----hhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-CCCChhhhhccHHHHHhhh-cCCChH
Q 015537 186 IAG-DSP----RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLI-HSNDDE 258 (405)
Q Consensus 186 l~~-~~~----~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll-~~~d~~ 258 (405)
+.- .+| +-.+.+++. -...+.++| .++-+.++..++.-+....... .-.+...+..++..+..-+ +.+..+
T Consensus 201 ~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL-~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~ 278 (1005)
T KOG1949|consen 201 AFPIRDPDLHAEEMDSIIQK-QFEELYSLL-EDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSD 278 (1005)
T ss_pred hccCCCCCccHHHHHHHHHH-HHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchh
Confidence 861 222 223444443 456778888 8888999888877776665543 2222222334444444333 344578
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcC
Q 015537 259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315 (405)
Q Consensus 259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 315 (405)
|+.....+|-++....... .+.+. ++|.+-..|.+....|+.+++..|..|-..
T Consensus 279 VR~svf~gl~~~l~np~sh--~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 279 VRCSVFKGLPMILDNPLSH--PLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred eehhHhcCcHHHHcCccch--hHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 9999999999998765432 12322 356666777788889999999888877543
No 241
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.30 E-value=5.1 Score=34.87 Aligned_cols=200 Identities=18% Similarity=0.188 Sum_probs=120.3
Q ss_pred HHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhh
Q 015537 162 PIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (405)
Q Consensus 162 ~~L~~-lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 240 (405)
+.|+. +-+..+++++...+.+|..++.+...+... ++..+..+. ..+.......+...+..+-...+ ..+
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~-r~f-- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKAND-RHF-- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCc-hHH--
Confidence 44444 445678999999999999999776222222 233444444 55555555555566666655432 222
Q ss_pred hhccHHHHHhh--------hc--CCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-CCCCcchHHHHHHHH
Q 015537 241 VSPALPALAHL--------IH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTV 309 (405)
Q Consensus 241 ~~~~l~~L~~l--------l~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l 309 (405)
+.+..++.. .. +...+.......++..++...++.-. .+++.+..+| .+.++.++..++.+|
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccccHHHHHHHHHHH
Confidence 223222222 11 12245555666788888877766332 3467888888 788888999999999
Q ss_pred hHhhcCChhhHHHHHh-cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHhCcHHHHHHHHhcccc
Q 015537 310 GNIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNITAG--NREQIQVIMHVHAFSIIVAFFFMFLH 384 (405)
Q Consensus 310 ~nl~~~~~~~~~~~~~-~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~lL~~~~~ 384 (405)
..++... +++ ......+.+-+..++.+.+.+..|-.+..+..+ +.+ ........++..++++....+.
T Consensus 147 ~~Lc~~~------vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e-~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 147 APLCEAE------VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSE-EYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHh------hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChh-hhhHHHHHHHHHHHhhcccccc
Confidence 9998322 222 124455556556665777777666555555443 222 2344578889999998877653
No 242
>PRK14707 hypothetical protein; Provisional
Probab=93.05 E-value=19 Score=40.84 Aligned_cols=298 Identities=15% Similarity=0.076 Sum_probs=160.6
Q ss_pred HHHHHHhhcC--CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 75 LPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 75 l~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
+..+++.+.. ++..-+. ++..|...+..+ +...+.+-..|+...|-.+-+-++++..+..+...-.-++.. ...+
T Consensus 165 ~~lllNafSKw~~~~~c~~-aa~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~ 241 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQA-VAPRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLR 241 (2710)
T ss_pred HHHHHHHhhcCCCCchHHH-HHHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHH
Confidence 4556665542 3344444 444444444433 333444444454444455555566566666555444445554 4444
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 153 KVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
..+-..| +...+..|+. ++.....+++.+|..=..+.+..++.+- ...+.-.++-|.+.++..+-..++..|..=.-
T Consensus 242 ~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~-~q~vanalNalSKwpd~~vc~~Aa~~la~rl~ 319 (2710)
T PRK14707 242 NELKPQE-LGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALD-PINVTQALNALSKWADLPVCAEAAIALAERLA 319 (2710)
T ss_pred HhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcC-HHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence 4443334 5555555554 6665666666555543334444544432 22455566667788888887777666654333
Q ss_pred CCCCCChhhh-hccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-CCCCcchHHHHHHHH
Q 015537 232 GKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTV 309 (405)
Q Consensus 232 ~~~~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l 309 (405)
.++....... .++-..|..+-+-+|..+...+..+|..=...+++..+.+--.|+ ..+++-| +=++..+...+...|
T Consensus 320 ~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~-a~~lNalsKWp~~~~c~~aa~~L 398 (2710)
T PRK14707 320 DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGV-SSVLNALSKWPDTPVCAAAASAL 398 (2710)
T ss_pred ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHH-HHHHhhhhcCCCchHHHHHHHHH
Confidence 3333222222 333344555556677777777777666644455554443433343 4444444 456667777777777
Q ss_pred hHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh
Q 015537 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFF 380 (405)
Q Consensus 310 ~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~ 380 (405)
..=..++.+..+.+-..|+-..|-.+-+-+ +..+...++-.|.--.+++.+..+.+--.+ +...++.|+
T Consensus 399 A~~l~~d~~l~~~~~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~LnalS 467 (2710)
T PRK14707 399 AEHVVDDLELRKGLDPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPIN-VTQALDALS 467 (2710)
T ss_pred HHHhccChhhhhhcchhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHH-HHHHHHHhh
Confidence 766666666665444444444444444445 888888888877777677777554443333 333333343
No 243
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.84 E-value=0.82 Score=33.17 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=58.4
Q ss_pred HHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChh
Q 015537 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (405)
Q Consensus 204 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (405)
...+..+ .++.+.++..++..|..|..... ........++..+...++++|+-|--+|+.++..|+...++
T Consensus 6 ~~al~~L-~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDL-NDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHc-cCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3455566 77888999999999999999865 34444578888899999999999999999999999977665
No 244
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.80 E-value=0.63 Score=41.30 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=92.4
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhh
Q 015537 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (405)
Q Consensus 161 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 240 (405)
+...+..|.+.+......++..+..++...++.....+. ..+..+++-+ ++....+-+.++.++..+...-.......
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777777777777554433222222 2555666667 77888999999999998887643222222
Q ss_pred hhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhh
Q 015537 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (405)
Q Consensus 241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 313 (405)
..+++..|..--..++.-|+.++-.+|..+..+-.-. .+++.|+..+.+..+.++..++.++.+..
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 2333333322222234568999999999988654432 24678888888889988888887776654
No 245
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.73 E-value=0.66 Score=38.86 Aligned_cols=124 Identities=16% Similarity=0.099 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCChhhHHHHH---------------hcCChHHHHHhhhC-----CCchhHHHHHHHHHHHh
Q 015537 170 SPSDDVREQAVWALGNIAGDSPRCRDLVL---------------SQGGLVPLLAQLNG-----QPKLSMLRNATWTLSNF 229 (405)
Q Consensus 170 ~~~~~i~~~a~~~L~nl~~~~~~~~~~i~---------------~~~~i~~L~~~l~~-----~~~~~~~~~a~~~l~~l 229 (405)
++.......++..|+|++.....++..+- +...+..|+..+.+ .....-..+++..|.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 34555677888899999877665543221 12246677777755 22356678899999999
Q ss_pred hcCCCCCChhhh--hc--cHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc---CChHHHHHhc
Q 015537 230 CRGKPQPPFDQV--SP--ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFL 294 (405)
Q Consensus 230 ~~~~~~~~~~~~--~~--~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL 294 (405)
++......+... .. .+..|+.++.+.+..-+.-++.+|.|+|-....+ ..++.. +++|.|+--|
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhc
Confidence 987533322222 22 3777888888887777788899999998665544 334432 3444444433
No 246
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.65 E-value=15 Score=39.94 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=52.6
Q ss_pred CChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015537 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (405)
Q Consensus 285 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (405)
|++|.|-.-|.+.+..+|..|+..+|.+......+.. --...+...++.-+.+. +..+|.++.-...++...++.
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~ 333 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPS 333 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCch
Confidence 7889999999999999999999999999876553322 00112445555555566 677777777777777665444
No 247
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=92.62 E-value=2.2 Score=38.03 Aligned_cols=146 Identities=19% Similarity=0.168 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhCC--ChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--Ch
Q 015537 132 QLQFEAAWALTNIASGTSEHTKVVIDHG--AVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GL 203 (405)
Q Consensus 132 ~~~~~a~~~L~ni~~~~~~~~~~~~~~g--~i~~L~~lL~~----~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~--~i 203 (405)
+-+.-++..+.-++.+ +.....+...+ +...+..++.. ..+..+-.++++++|+..+.. .+..+.... .+
T Consensus 78 ~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i 155 (268)
T PF08324_consen 78 ESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSI 155 (268)
T ss_dssp CC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCH
T ss_pred ccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchH
Confidence 4466666666555554 33333333322 23444444432 467788899999999998766 455555432 23
Q ss_pred HHHHHhhhCCC---chhHHHHHHHHHHHhhcCC-CCC-ChhhhhccHHHHHhhh-cC-CChHHHHHHHHHHHHhccCChh
Q 015537 204 VPLLAQLNGQP---KLSMLRNATWTLSNFCRGK-PQP-PFDQVSPALPALAHLI-HS-NDDEVLTDACWALSYLSDGTND 276 (405)
Q Consensus 204 ~~L~~~l~~~~---~~~~~~~a~~~l~~l~~~~-~~~-~~~~~~~~l~~L~~ll-~~-~d~~v~~~a~~~l~~l~~~~~~ 276 (405)
...+..+.... +..++..++..+.|++-.. ... .......++..+...+ .. .|+++...++-+++++...++.
T Consensus 156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS 235 (268)
T ss_dssp HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence 33333332333 7888999999999997653 111 2222234666666633 33 6899999999999999966654
Q ss_pred HHH
Q 015537 277 KIQ 279 (405)
Q Consensus 277 ~~~ 279 (405)
..+
T Consensus 236 ~~~ 238 (268)
T PF08324_consen 236 AKQ 238 (268)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 248
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.26 E-value=1.6 Score=36.20 Aligned_cols=111 Identities=17% Similarity=0.165 Sum_probs=75.4
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcC-----C--------------hHHHHHhcCC-CCcchHHHHH
Q 015537 247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG-----V--------------FPRLAEFLMH-PSPSVLIPAL 306 (405)
Q Consensus 247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-----~--------------l~~L~~lL~~-~~~~v~~~a~ 306 (405)
.+..++.++++.++..|+.++..|.++........-+.+ + -..|+..|.. .+..+....+
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l 123 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL 123 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 344556778899999999999999988765544443222 1 1123444443 3667888999
Q ss_pred HHHhHhhcCChhhHHH-HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 015537 307 RTVGNIVTGDDMQTQC-VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (405)
Q Consensus 307 ~~l~nl~~~~~~~~~~-~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 358 (405)
++++.++...+...-. =+-..++..+..++.+. |+.++..+.-+++-+.+.
T Consensus 124 K~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~-d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 124 KCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR-DPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence 9999999988754321 11123455566677777 999999999899888753
No 249
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=92.17 E-value=3.4 Score=42.01 Aligned_cols=157 Identities=18% Similarity=0.197 Sum_probs=109.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
.|..++..|.|.+..+..++-..+...+..++.+ + ++..|+++.-+.++ ..|+.+|..+ ..|..+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-~-------l~~~l~~y~~~t~s----~~~~~il~~~--~~P~~K- 69 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP-W-------LVNGLVDYYLSTNS----QRALEILVGV--QEPHDK- 69 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-H-------HHHHHHHHHhhcCc----HHHHHHHHhc--CCccHH-
Confidence 5789999999999999988888888887654222 1 26677776544442 3455566654 223222
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
..+..|-..+. .+.-+-.++..|+.+....+..-..+.+...+..|++.|..+.+..+...++.+|.-|.-.-
T Consensus 70 -----~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 70 -----HLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred -----HHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 23444555555 45667789999999998877777888899999999999988889999999999988887655
Q ss_pred CCCChhhhhccHHHHHhhh
Q 015537 234 PQPPFDQVSPALPALAHLI 252 (405)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll 252 (405)
|.........++.+...++
T Consensus 143 p~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 143 PSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 5444444444444444444
No 250
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.12 E-value=0.99 Score=32.75 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=58.2
Q ss_pred hHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015537 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (405)
Q Consensus 287 l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (405)
+...+..|.++.+.+|..++..|..+..... ....-..+++..+...+.++ ++.|=-.|...|+.++...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH
Confidence 4556677888999999999999999998766 11122346888999999999 999999999999999876665
No 251
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.99 E-value=8.4 Score=34.15 Aligned_cols=220 Identities=15% Similarity=0.102 Sum_probs=126.5
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 015537 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR--EDYPQLQFEAAWALTNIASGTSEHTKVV 155 (405)
Q Consensus 78 l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~--~~~~~~~~~a~~~L~ni~~~~~~~~~~~ 155 (405)
|=..|.++|+..+..|+..|..++..- ++ . .....-+..|++++.+ .+ ......++..+..+.....-....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~l--p~-~-~L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~~~~~~~~- 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERL--PP-D-FLSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKMKNFSPES- 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhC--CH-h-hccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhCcCCChhh-
Confidence 334678899999999999999988643 21 1 1222224555554432 23 344555566666666432211111
Q ss_pred HhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHH--hcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 156 IDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVL--SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 156 ~~~g~i~~L~~lL~--~~~~~i~~~a~~~L~nl~~~~~~~~~~i~--~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
...++..+..-.. +.....|..+...+..+..+.. ..+. ..+.+..++..+....||.-.-.+...+..+..
T Consensus 78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 0012222322111 2345667788888888875432 2222 234677888888777899988888888888877
Q ss_pred CCCCCChhhhhccHHHHHhhh----c-C-CCh--HHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHH
Q 015537 232 GKPQPPFDQVSPALPALAHLI----H-S-NDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303 (405)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll----~-~-~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 303 (405)
..+. ....+.+...+.... + . +|+ -...+...+|.......+.... -.+|.|++-|.++.+.++.
T Consensus 154 ~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~~~K~ 226 (262)
T PF14500_consen 154 EFDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSPSVKL 226 (262)
T ss_pred hccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCcHHHH
Confidence 6542 222233444433332 1 1 232 1334444445544434443333 3569999999999999999
Q ss_pred HHHHHHhHhhc
Q 015537 304 PALRTVGNIVT 314 (405)
Q Consensus 304 ~a~~~l~nl~~ 314 (405)
.++.+|...+.
T Consensus 227 D~L~tL~~c~~ 237 (262)
T PF14500_consen 227 DSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 252
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=1.6 Score=43.41 Aligned_cols=136 Identities=13% Similarity=0.047 Sum_probs=92.5
Q ss_pred hhhhhccHHHHHhhhcC--------CChHHHHHHHHHHHHhcc--CChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHH
Q 015537 238 FDQVSPALPALAHLIHS--------NDDEVLTDACWALSYLSD--GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR 307 (405)
Q Consensus 238 ~~~~~~~l~~L~~ll~~--------~d~~v~~~a~~~l~~l~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 307 (405)
.....|+++.+...+.. +++.-...|++.++++.+ ..+.-..-+++.=+++.++..++++..-++..||.
T Consensus 403 e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace 482 (970)
T COG5656 403 EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACE 482 (970)
T ss_pred hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHH
Confidence 33457899999888832 123445667777777765 22333344566667788888888888889999999
Q ss_pred HHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 015537 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFF 379 (405)
Q Consensus 308 ~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL 379 (405)
.++.+. .+..+..+-..+.+...+++.+. +-.++-+|+.++.-+..+. +....+.+.+.+.+-++|
T Consensus 483 ~is~~e---eDfkd~~ill~aye~t~ncl~nn-~lpv~ieAalAlq~fi~~~--q~h~k~sahVp~tmekLL 548 (970)
T COG5656 483 FISTIE---EDFKDNGILLEAYENTHNCLKNN-HLPVMIEAALALQFFIFNE--QSHEKFSAHVPETMEKLL 548 (970)
T ss_pred HHHHHH---HhcccchHHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHHhch--hhhHHHHhhhhHHHHHHH
Confidence 999883 22333344446677788888887 8899999999999998754 344444555555444444
No 253
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=91.88 E-value=1.8 Score=49.48 Aligned_cols=202 Identities=15% Similarity=0.158 Sum_probs=116.6
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh---CCCchhHHHHHHHHHHHhhc
Q 015537 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~---~~~~~~~~~~a~~~l~~l~~ 231 (405)
..+.+.+..+...+.+..-.+++.+...+++++..+|.+.-..+. ...+..+. .+.-.-+......-+..+..
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr----~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~ 636 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLR----KTLLELLTELEFSGMARTKEESAKLLCELII 636 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHH----HHHHHHhchhhhcchHHhHHHHHHHhhHHHH
Confidence 334455666777777778889999999999999877633211111 11122221 11111111111111111111
Q ss_pred CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-CCCCcchHHHHHHHHh
Q 015537 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVG 310 (405)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~ 310 (405)
..+.-....+.+.+..++..+...++.+...+..+++.|+..........++ ..++.+.+.+ ...+..-+..++++++
T Consensus 637 ~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~ 715 (2341)
T KOG0891|consen 637 SSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALG 715 (2341)
T ss_pred HHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhh
Confidence 1111122233455666777778888888888889999988654432322333 3344444444 3345566888999999
Q ss_pred HhhcCChhhHHHHHh-cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015537 311 NIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (405)
Q Consensus 311 nl~~~~~~~~~~~~~-~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (405)
++............+ .-++..+...+.......++.++...++++.+.++.
T Consensus 716 ~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~ 767 (2341)
T KOG0891|consen 716 QLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPY 767 (2341)
T ss_pred hhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchh
Confidence 999765543222222 247778888888777788999999999988764443
No 254
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.75 E-value=14 Score=37.48 Aligned_cols=255 Identities=11% Similarity=0.076 Sum_probs=127.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh--CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hhh
Q 015537 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS-PRC 193 (405)
Q Consensus 118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~--~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~-~~~ 193 (405)
...++.+|++.++-.++..++.++.-...+-.-..+.+.. ......+..++.. +.-+-+...+.+++.+...- +..
T Consensus 528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I 607 (978)
T KOG1993|consen 528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHI 607 (978)
T ss_pred HHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 4556777777654667777888777766653222333321 1333344444443 34455666777777776432 211
Q ss_pred HHHHHhcCChHHHHHhhhCC-CchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChH---HHHHHHHHHHH
Q 015537 194 RDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE---VLTDACWALSY 269 (405)
Q Consensus 194 ~~~i~~~~~i~~L~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~---v~~~a~~~l~~ 269 (405)
+....+ ++..+=.+-..+ +.+-++...+.++.|+...-.........-++|.+-....-+.|+ ..+++...=..
T Consensus 608 ~P~~~~--ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~ 685 (978)
T KOG1993|consen 608 APYAST--IVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLT 685 (978)
T ss_pred hHHHHH--HHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHH
Confidence 111111 122222222223 355667777888999988654334433334444443333322222 33333222111
Q ss_pred hccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHH
Q 015537 270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEAC 349 (405)
Q Consensus 270 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~ 349 (405)
...+.+.....+. +++|.++..+.......+ .++.++..-.--+...--.-...|+...+..++.+- ..+-....+
T Consensus 686 ~L~n~~~l~p~ll--~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dv-r~egl~avL 761 (978)
T KOG1993|consen 686 TLMNSQKLTPELL--LLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDV-RNEGLQAVL 761 (978)
T ss_pred HHhcccccCHHHH--HHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 2222222222222 467888888765443333 344444433322221111223346778888888766 555555666
Q ss_pred HHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 015537 350 WTVSNITAGNREQIQVIMHVHAFSIIVAFF 379 (405)
Q Consensus 350 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL 379 (405)
-++.++...++ ........+++|.+..-.
T Consensus 762 kiveili~t~~-il~~~~~~~~L~~lf~~I 790 (978)
T KOG1993|consen 762 KIVEILIKTNP-ILGSLLFSPLLSRLFLSI 790 (978)
T ss_pred HHHHHHHhhhH-HHHhhhcchhhHHHHHHH
Confidence 67777766555 355566677777776655
No 255
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.71 E-value=13 Score=35.61 Aligned_cols=152 Identities=16% Similarity=0.089 Sum_probs=86.8
Q ss_pred hcCcHHHHHHHh----cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhC
Q 015537 114 RSGVVPRFVEFL----LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAG 188 (405)
Q Consensus 114 ~~g~l~~Li~lL----~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~ 188 (405)
+.|.+..++..+ ++++ ..++..|+.+|+|.+++-|........ -.+..++.-|. ..+.+|+..++.+|..+..
T Consensus 252 ~~~lL~s~~~~la~ka~dp~-a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~ 329 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPS-AKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLE 329 (533)
T ss_pred ccccHHHHHHHHHHhccCch-hHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 345555554443 3444 689999999999999985554443333 23445555444 4578899999999888764
Q ss_pred CChhhHHHHHhcCCh---HHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCCh-hh---hhccHHHHHhhhcCCChHHHH
Q 015537 189 DSPRCRDLVLSQGGL---VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF-DQ---VSPALPALAHLIHSNDDEVLT 261 (405)
Q Consensus 189 ~~~~~~~~i~~~~~i---~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~---~~~~l~~L~~ll~~~d~~v~~ 261 (405)
.-. . .-+..+.+ ..+..++ .+.+.+++.++...+..|+........ .+ +.+.+..++-.+++.++.+ .
T Consensus 330 ~~~-~--~~l~~~~l~ialrlR~l~-~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a 404 (533)
T KOG2032|consen 330 KAS-N--DDLESYLLNIALRLRTLF-DSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-A 404 (533)
T ss_pred hhh-h--cchhhhchhHHHHHHHHH-HhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-H
Confidence 321 1 11122222 3344445 778888998888888777665422222 12 2222222333344455543 5
Q ss_pred HHHHHHHHhcc
Q 015537 262 DACWALSYLSD 272 (405)
Q Consensus 262 ~a~~~l~~l~~ 272 (405)
.||......+.
T Consensus 405 ~ACr~~~~~c~ 415 (533)
T KOG2032|consen 405 RACRSELRTCY 415 (533)
T ss_pred HHHHHHHHhcC
Confidence 56666655553
No 256
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.59 E-value=1.4 Score=37.26 Aligned_cols=142 Identities=13% Similarity=0.159 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC----CCHHHHHHHHHHHHHHhcCCc-hhHHHHHhCCChHH
Q 015537 89 VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----DYPQLQFEAAWALTNIASGTS-EHTKVVIDHGAVPI 163 (405)
Q Consensus 89 ~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~----~~~~~~~~a~~~L~ni~~~~~-~~~~~~~~~g~i~~ 163 (405)
-...|+..|.-++|. .+....+++..+--.+..+|... ..+-++..++.+++.+..+++ .....+....++|.
T Consensus 116 RvcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 116 RVCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred HHHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 334555555555542 34444566665433444555432 235688999999999888644 44556667799999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh-------cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS-------QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 164 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~-------~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
+++.+...+.--+..++.+++.+.+++...+-.... ...+..++..+-......+.+.++.+-..||..
T Consensus 194 cLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 999999999888999999999999887654332211 112333333343445666777777777777665
No 257
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=91.58 E-value=9.3 Score=33.83 Aligned_cols=216 Identities=16% Similarity=0.098 Sum_probs=120.0
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhccCC--CCchHH-HH------hc-CcHHHH----HHHhcCCCCHHHHHHHHHHHHHH
Q 015537 79 VAGVWSNDSGVQYECTTQFRKLLSIER--SPPIEE-VI------RS-GVVPRF----VEFLLREDYPQLQFEAAWALTNI 144 (405)
Q Consensus 79 ~~~l~s~~~~~~~~a~~~l~~l~s~~~--~~~~~~-~~------~~-g~l~~L----i~lL~~~~~~~~~~~a~~~L~ni 144 (405)
+.+|.+..+..-..|+..+.++++.-+ ++.... +. .. |..+-+ ++=|.++. ....++..|..+
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L 89 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL 89 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence 446667777777777777777765421 111111 11 11 333333 44444433 345555566655
Q ss_pred hcCC-------chhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCC
Q 015537 145 ASGT-------SEHTKVVIDHGAVPIFVKLLYSPS----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ 213 (405)
Q Consensus 145 ~~~~-------~~~~~~~~~~g~i~~L~~lL~~~~----~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~ 213 (405)
+... .+.|-.+.-.+.+|.++.-+.+++ ......++..|+.+|.... ...+..++..+.+.
T Consensus 90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~ 161 (262)
T PF14225_consen 90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG 161 (262)
T ss_pred hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence 5432 112322222345677777777766 2445567788888873321 22344555555443
Q ss_pred CchhHHHHHHHHHHHhhcCC-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHH
Q 015537 214 PKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292 (405)
Q Consensus 214 ~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ 292 (405)
.-.........++..++++. |.. ....+..+..++.++-+.++..++..|..+...-+-... ...+++..+.+
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~P~~----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllr 235 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFFPDH----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPLLR 235 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHHHH
Confidence 33333333333344444443 322 235667788899888899999999999988765433222 44567888888
Q ss_pred hcCCCCcchHHHHHHHHhHhhc
Q 015537 293 FLMHPSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 293 lL~~~~~~v~~~a~~~l~nl~~ 314 (405)
+|+++- -..|+.++-++.+
T Consensus 236 lL~t~~---~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 236 LLQTDL---WMEALEVLDEIVT 254 (262)
T ss_pred HhCCcc---HHHHHHHHHHHHh
Confidence 886643 4566766666554
No 258
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.44 E-value=0.7 Score=39.56 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhhccCCCCchHHHHhcC-------cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH-HHhCC
Q 015537 88 GVQYECTTQFRKLLSIERSPPIEEVIRSG-------VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV-VIDHG 159 (405)
Q Consensus 88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g-------~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~-~~~~g 159 (405)
.-|..|+.++.|+.-. +.+++.++..+ ++..|+++|....++..++-|+-.|.+++.++...... ..+.+
T Consensus 139 SPqrlaLEaLcKLsV~--e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVI--ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhhee--ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 5688899999999654 35555555443 46677777877666889999999999999987665544 45568
Q ss_pred ChHHHHHhhCCCCH
Q 015537 160 AVPIFVKLLYSPSD 173 (405)
Q Consensus 160 ~i~~L~~lL~~~~~ 173 (405)
.|..|+.++.+...
T Consensus 217 ~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 217 CISHLIAFIEDAEQ 230 (257)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999986433
No 259
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=8.2 Score=38.27 Aligned_cols=142 Identities=15% Similarity=0.120 Sum_probs=70.0
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
++..+=+.+.++++.+..-|+-.+.-.-++-.++. .-++-.|.+.+++++ ..++..|+.-|+-.-+++ +++
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~------dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e 486 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNEC------DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE 486 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeecccccccc------CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence 35555555555555555444433322211111110 012445667777777 678888887777655552 333
Q ss_pred HHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 154 VVIDHGAVPIFVKLLYSPS--DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~--~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
.+.. .|..++.+.+ .++...+..+|+.+...+.. ..+ ...+++.++..-.........+...-.|..+.-
T Consensus 487 ~V~~-----lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl 558 (878)
T KOG2005|consen 487 EVLE-----LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFL 558 (878)
T ss_pred HHHH-----HHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence 3332 5556666644 45777777788877644321 111 111333444433212233444555555555554
Q ss_pred C
Q 015537 232 G 232 (405)
Q Consensus 232 ~ 232 (405)
+
T Consensus 559 g 559 (878)
T KOG2005|consen 559 G 559 (878)
T ss_pred c
Confidence 4
No 260
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=91.39 E-value=9.3 Score=33.44 Aligned_cols=135 Identities=16% Similarity=0.193 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHH--------HHHHHHHHHHHhhCCChhhHHHHHhcCCh
Q 015537 132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD--------VREQAVWALGNIAGDSPRCRDLVLSQGGL 203 (405)
Q Consensus 132 ~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~--------i~~~a~~~L~nl~~~~~~~~~~i~~~~~i 203 (405)
.....|+..|+.+-. ..+++.++++++.++.. +-+....+++.+ -.|-+
T Consensus 57 ~~~~~a~~LLaq~re-----------~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv------------~~G~~ 113 (249)
T PF06685_consen 57 NLHFYALYLLAQFRE-----------ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV------------GDGDI 113 (249)
T ss_pred HHHHHHHHHHHHHhh-----------hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH------------hCCCH
Confidence 445666666665532 35799999999865542 122222222222 23556
Q ss_pred HHHHHhhhCCC-chhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC-ChhHHHHH
Q 015537 204 VPLLAQLNGQP-KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAV 281 (405)
Q Consensus 204 ~~L~~~l~~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~ 281 (405)
..|..++.+.. +.-++..++.++..+....+......+.-+-..+...+..++..+....+..+..|-.. -...+..+
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~ 193 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKA 193 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHH
Confidence 67777774433 67788999999999999876555554444444444445444333333333333333211 11335556
Q ss_pred HhcCChHH
Q 015537 282 IEAGVFPR 289 (405)
Q Consensus 282 ~~~~~l~~ 289 (405)
.+.|.++.
T Consensus 194 f~~~lVd~ 201 (249)
T PF06685_consen 194 FEDGLVDP 201 (249)
T ss_pred HHcCCCCc
Confidence 66666654
No 261
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.35 E-value=7.7 Score=32.42 Aligned_cols=145 Identities=16% Similarity=0.094 Sum_probs=92.3
Q ss_pred ChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHH
Q 015537 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA 280 (405)
Q Consensus 202 ~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~ 280 (405)
.++.++++. .+++..++..|+..+..+.+.. -.+ ..++|.++.|..++++.++..|...+..+.+..+.....
T Consensus 9 yl~~Il~~~-~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 9 YLKNILELC-LSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 456677766 7889999999999999888764 111 358899999999999999999999999998776655443
Q ss_pred HHhcCChHHH--HHhcCCCCc-ch---HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC-------chhHHHH
Q 015537 281 VIEAGVFPRL--AEFLMHPSP-SV---LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-------KKSIKKE 347 (405)
Q Consensus 281 ~~~~~~l~~L--~~lL~~~~~-~v---~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~-------~~~v~~~ 347 (405)
-...|+-... ...+..+.. .. ....+..+-.++.++...+.. ++..|++.+.... .+.-...
T Consensus 83 ~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~~~~~~~~~~~~~~l~~ 157 (187)
T PF12830_consen 83 RYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDFDLTKLSSESSPSDLDF 157 (187)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHhhccccccccchhHHHH
Confidence 3333322221 111221111 11 445555666666655555553 4555666665431 3344566
Q ss_pred HHHHHHHHhc
Q 015537 348 ACWTVSNITA 357 (405)
Q Consensus 348 a~~~L~nl~~ 357 (405)
.+++.-|++.
T Consensus 158 ~~Fla~nLA~ 167 (187)
T PF12830_consen 158 LLFLAENLAT 167 (187)
T ss_pred HHHHHHHHhc
Confidence 7777778775
No 262
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=90.74 E-value=17 Score=35.32 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=109.1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC---chhHHHHHHHHHHHhhcCCCCCC
Q 015537 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP---KLSMLRNATWTLSNFCRGKPQPP 237 (405)
Q Consensus 161 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~---~~~~~~~a~~~l~~l~~~~~~~~ 237 (405)
...+...+.++++.-+..++..|..++.+.. +...++...++..|..++.+.. ..++....+.+++.+-...- ..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 3456667777777777778888888887665 6677788889999999995443 35667777777776665532 22
Q ss_pred hhhh-hccHHHHHhhh--cCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537 238 FDQV-SPALPALAHLI--HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 238 ~~~~-~~~l~~L~~ll--~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~ 314 (405)
+..+ ..++.....+. +.-+..+...|+..+-.+.-+++...+.+.+.--+..|+..|+..+..++..|+..+..+..
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 2211 23333333333 23467788888999988888888777878888889999999999898888888888877765
Q ss_pred CCh
Q 015537 315 GDD 317 (405)
Q Consensus 315 ~~~ 317 (405)
..+
T Consensus 243 ~a~ 245 (713)
T KOG2999|consen 243 KAP 245 (713)
T ss_pred hCC
Confidence 443
No 263
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=90.72 E-value=13 Score=33.90 Aligned_cols=154 Identities=13% Similarity=0.087 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhCC-----------ChHHHHHhhC------CCCHHHHHHHHHHHHHhhCCChhh
Q 015537 131 PQLQFEAAWALTNIASGTSEHTKVVIDHG-----------AVPIFVKLLY------SPSDDVREQAVWALGNIAGDSPRC 193 (405)
Q Consensus 131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g-----------~i~~L~~lL~------~~~~~i~~~a~~~L~nl~~~~~~~ 193 (405)
-++|..|+.|+.....++++.+..+++.- ....|+..|- +.++.-..-|..+|.++..+++..
T Consensus 52 f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~ 131 (312)
T PF04869_consen 52 FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEA 131 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 67899999999999999898888776521 1222444443 234444556777777777777666
Q ss_pred HHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhh----c-CCChHHHHHHHHHHH
Q 015537 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI----H-SNDDEVLTDACWALS 268 (405)
Q Consensus 194 ~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll----~-~~d~~v~~~a~~~l~ 268 (405)
++.+..- .. ......... ...++.+..+| . ..|+.++..-+..|.
T Consensus 132 Ke~al~V-------~~-------------------~~~~~ge~~----vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~ 181 (312)
T PF04869_consen 132 KEQALRV-------TE-------------------GDESSGEEP----VTLIQTVSELLIASLRRNSDPRIQIGYLMLLI 181 (312)
T ss_dssp HHHHTT---------E-------------------E--STTS------EEHHHHHHHHTTT----T--HHHHHHHHHHHH
T ss_pred HHHHHcc-------cC-------------------CCCCCCCCc----ccHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence 5554331 00 000001111 12333333333 2 346778888788887
Q ss_pred HhccCChhHHHHHHhc-CChHHHHHhcCC---CCcchHHHHHHHHhHhhc
Q 015537 269 YLSDGTNDKIQAVIEA-GVFPRLAEFLMH---PSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 269 ~l~~~~~~~~~~~~~~-~~l~~L~~lL~~---~~~~v~~~a~~~l~nl~~ 314 (405)
....+++..+..+++. +.++.|+..... .+.-++--+...||-+..
T Consensus 182 ~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 182 VWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 7777888877878777 578888887532 234455555566665543
No 264
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=90.09 E-value=1.1 Score=35.63 Aligned_cols=74 Identities=8% Similarity=0.030 Sum_probs=59.0
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~ 146 (405)
+.+..+.+.|++.++.+|..|+..|--+...-..+...++.+.+++..|+.++.....+.++..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999998887653234455677889999999999854448899999888877664
No 265
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=90.04 E-value=3.7 Score=36.89 Aligned_cols=138 Identities=12% Similarity=0.169 Sum_probs=80.4
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH-HHHHhCCChHH----HHHhhC--------CCCHHHHHHHHHHH
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT-KVVIDHGAVPI----FVKLLY--------SPSDDVREQAVWAL 183 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~-~~~~~~g~i~~----L~~lL~--------~~~~~i~~~a~~~L 183 (405)
++|.++.++++.+ +.+|..++.+|..+....+... ..+.+.|..+. |...+. .+...+...+.-++
T Consensus 120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 5899999999987 9999999999999988644333 23555665443 333443 34566888888888
Q ss_pred HHhhCC----ChhhHHHHHhcCChHHHHHhhhC---CCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCC
Q 015537 184 GNIAGD----SPRCRDLVLSQGGLVPLLAQLNG---QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN 255 (405)
Q Consensus 184 ~nl~~~----~~~~~~~i~~~~~i~~L~~~l~~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~ 255 (405)
..++.- +...+......-.-+.++.-+.. .+.+.+....+..+..+...-..........+++.+.+.+.+.
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 888531 11111111111111212222222 2246777777777766666533333444466677776666544
No 266
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=89.95 E-value=1.6 Score=38.93 Aligned_cols=134 Identities=16% Similarity=0.116 Sum_probs=78.4
Q ss_pred CchhHHHHHHHHHHHhhcCCCCCChhhh--h-ccHHHHHhhhcCC---ChHHHHHHHHHHHHhccCChhHH-HHHHhcCC
Q 015537 214 PKLSMLRNATWTLSNFCRGKPQPPFDQV--S-PALPALAHLIHSN---DDEVLTDACWALSYLSDGTNDKI-QAVIEAGV 286 (405)
Q Consensus 214 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~-~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~ 286 (405)
..+..+-.++++++|+..+.+....... . .++..+.....+. +..++..++..+.|++-...... ..-....+
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 5677888899999999987543322221 2 2334444444443 68888999888888863211000 00001123
Q ss_pred hHHHHHhc-CC-CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHH
Q 015537 287 FPRLAEFL-MH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE 347 (405)
Q Consensus 287 l~~L~~lL-~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~ 347 (405)
+..++..+ .. .+++....++-++|+++..++.........|+-..+...-....++++++-
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v 264 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEV 264 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHH
Confidence 45566633 22 578899999999999997776655544444555555554443335555543
No 267
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.87 E-value=1.6 Score=38.92 Aligned_cols=140 Identities=15% Similarity=0.157 Sum_probs=96.7
Q ss_pred HHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHh
Q 015537 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 283 (405)
Q Consensus 204 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~ 283 (405)
...+..| .+.+-......+..+..|+..++......+..++..+++-+++....|-..||.+++.+...-...+...
T Consensus 91 ~~~l~~L-~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~-- 167 (334)
T KOG2933|consen 91 KQALKKL-SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE-- 167 (334)
T ss_pred HHHHHHh-chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3445555 6667777777778888888877655555667777788888888888899999999998876544443332
Q ss_pred cCChHHHH-HhcCCC---CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 284 AGVFPRLA-EFLMHP---SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 284 ~~~l~~L~-~lL~~~---~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
++.++ .+|... +.-++..|-.+|-.++.+-..+ .+++.|...+.+. .+.++..++.+..++..
T Consensus 168 ---ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 168 ---LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHS-NPRVRAKAALCFSRCVI 234 (334)
T ss_pred ---HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence 23333 444322 3347888888888777543322 3577788888888 89999998888887754
No 268
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=89.65 E-value=1.7 Score=44.62 Aligned_cols=132 Identities=15% Similarity=0.158 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhh
Q 015537 173 DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI 252 (405)
Q Consensus 173 ~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll 252 (405)
+.++.+++-+++++|--.... ....+|.+++-|..+....++.+++-++.-+|..- ..++...+|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~L-----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRL-----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence 557888999999998533322 23368899999988888999999988888888652 234578899999999
Q ss_pred cCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh
Q 015537 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (405)
Q Consensus 253 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 317 (405)
.++++-|+..++-.|++|....--...- .++-+++-.|-+.+++++..|=.+++.+.....
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~~vKw~G----~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVKWNG----ELFIRFMLALLDANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhhcch----hhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999987543221110 112233333445678899999999999986543
No 269
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=89.61 E-value=17 Score=33.55 Aligned_cols=154 Identities=18% Similarity=0.112 Sum_probs=103.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhc-CCchhHHHHHhC-C-ChHHHHHhhCC-----CC--------HHHHHHHHH
Q 015537 118 VPRFVEFLLREDYPQLQFEAAWALTNIAS-GTSEHTKVVIDH-G-AVPIFVKLLYS-----PS--------DDVREQAVW 181 (405)
Q Consensus 118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~-~~~~~~~~~~~~-g-~i~~L~~lL~~-----~~--------~~i~~~a~~ 181 (405)
++.+...|++.. +.+...++..|..++. ........+... + -.+.+..++.. .. +.+|...+.
T Consensus 58 ~k~lyr~L~~~~-~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSSK-PSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcCc-HHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 778888888888 7888899999999999 655666666654 2 23556666642 11 288888887
Q ss_pred HHHHhhC-CChhhHHHHHh-cCChHHHHHhhhCCCchhHHHHHHHHHHH-hhcCC--CCCC--hhhhhccHHHHHhhhcC
Q 015537 182 ALGNIAG-DSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSN-FCRGK--PQPP--FDQVSPALPALAHLIHS 254 (405)
Q Consensus 182 ~L~nl~~-~~~~~~~~i~~-~~~i~~L~~~l~~~~~~~~~~~a~~~l~~-l~~~~--~~~~--~~~~~~~l~~L~~ll~~ 254 (405)
.+..+.. .++..+..+++ .+.+..+.+-| ...+.++...++.++.. +.... +... .......+..|..+...
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l-~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGL-RKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcc-cCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 7766654 44555555554 45677788888 55677788888888774 44433 1111 12226778888887777
Q ss_pred CCh----HHHHHHHHHHHHhccC
Q 015537 255 NDD----EVLTDACWALSYLSDG 273 (405)
Q Consensus 255 ~d~----~v~~~a~~~l~~l~~~ 273 (405)
.++ .+...+-..|..+|..
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcC
Confidence 766 6777777777777654
No 270
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=89.50 E-value=6.5 Score=31.18 Aligned_cols=75 Identities=15% Similarity=0.058 Sum_probs=62.6
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
.++..|..-|.+.++.++-.|+..|-.+..+ +..+...+...+++..|..++....++.|+..++..+..-+...
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 3567777888888999999999999988876 46688888899999999999966778899999988888877664
No 271
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=89.38 E-value=3.7 Score=47.19 Aligned_cols=193 Identities=15% Similarity=0.130 Sum_probs=102.6
Q ss_pred hHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhc-cHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHH
Q 015537 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 281 (405)
Q Consensus 203 i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~ 281 (405)
+..+...+ .+....++..+...+.+++..+|......+.. .+..+..+-.+.-..+...+..-+..+.......+...
T Consensus 567 lr~~~~al-~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~ 645 (2341)
T KOG0891|consen 567 LRLLFIAL-HDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPY 645 (2341)
T ss_pred HHHHHHHh-hhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhh
Confidence 33344444 66677888888888888888766222211111 11111111111112122222222222222222222211
Q ss_pred HhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015537 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (405)
Q Consensus 282 ~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (405)
+ ...+..++..+..++..+...++.+++.++...........+ ..++.+.+.+.+.....-+..+.|+++++.+...-
T Consensus 646 v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~ 723 (2341)
T KOG0891|consen 646 V-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGY 723 (2341)
T ss_pred c-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccce
Confidence 1 234566777778888889999999999999755533333444 56666666666554666778889999999863211
Q ss_pred HHH-HHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537 362 QIQ-VIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 362 ~~~-~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
.+. +....-++..|+..+.... -..+|.++.-.++|+
T Consensus 724 ~v~p~~~~P~ll~~l~~~~~te~----~~~ir~~~v~~~g~~ 761 (2341)
T KOG0891|consen 724 VVDPYLDYPELLDILINILKTEQ----SSTIRREAIRLLGLL 761 (2341)
T ss_pred EecccccChHHHHHHHHHHhHhh----hhHHHHHHHHHhhhh
Confidence 111 1112233344444444332 236788887777764
No 272
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.16 E-value=4.5 Score=33.02 Aligned_cols=108 Identities=15% Similarity=0.090 Sum_probs=73.1
Q ss_pred CChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhc--CchHHHHHhhcCCCchhHHHHHHHHHHHHhc---CC
Q 015537 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY--QALPCLLNLLSGNYKKSIKKEACWTVSNITA---GN 359 (405)
Q Consensus 285 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~ 359 (405)
....++..+|+++++.-+-.++..++-++..++. +.+.+. ..+..++.+++.+.++.+++.++-++..|.. +.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3457788999999998899999999888866532 223333 3888899999988678889999999999975 55
Q ss_pred HHHHHHHHH---hCcHHHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537 360 REQIQVIMH---VHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLV 401 (405)
Q Consensus 360 ~~~~~~l~~---~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n 401 (405)
++..+.+.. .++++.++.++.. ......+.-+|..
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~-------~~~~~~~l~~L~~ 140 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD-------SSCPETALDALAT 140 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc-------cccHHHHHHHHHH
Confidence 665555543 3344444454432 1345555555543
No 273
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=89.11 E-value=6.6 Score=36.79 Aligned_cols=128 Identities=19% Similarity=0.168 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC------CCCHHHHHHHHHHHHHhhCCChhhH----------
Q 015537 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY------SPSDDVREQAVWALGNIAGDSPRCR---------- 194 (405)
Q Consensus 131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~------~~~~~i~~~a~~~L~nl~~~~~~~~---------- 194 (405)
..-+..|+..|..++....+....++ ...+-.+|. +.+..-++.|+..++.++......+
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v 300 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV 300 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence 45678888888888864322222222 122333333 3577889999999999996542211
Q ss_pred --HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHH
Q 015537 195 --DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL 267 (405)
Q Consensus 195 --~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l 267 (405)
..+....+++.|. -..+..+-++..|++.+..+-..- .......++|.++.+|.+++.-|...|+.++
T Consensus 301 ~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l---~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQL---PKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1222333334333 123456778889999998887653 3456678999999999999999999998775
No 274
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=88.70 E-value=10 Score=31.00 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=72.6
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC--CChHHHHHhhCCC-CHHHHHHHHHHHHHhh---CCC
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--GAVPIFVKLLYSP-SDDVREQAVWALGNIA---GDS 190 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~--g~i~~L~~lL~~~-~~~i~~~a~~~L~nl~---~~~ 190 (405)
.+..+..+|++++ +.-+-.++..+..++..++ .+.+.+. ..+..++..|+.+ .+.+.+.++.++..|. .+.
T Consensus 26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4566778888877 7778888877777776532 2334343 3578888888874 5677888888888876 344
Q ss_pred hhhHHHHHhc---CChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCC
Q 015537 191 PRCRDLVLSQ---GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237 (405)
Q Consensus 191 ~~~~~~i~~~---~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~ 237 (405)
++....+... ++++.++.++.. ......++.+|..+....|..-
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTF 149 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccc
Confidence 4443333322 234444554422 5666777777777776655433
No 275
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=88.58 E-value=1.6 Score=34.67 Aligned_cols=75 Identities=12% Similarity=0.067 Sum_probs=60.1
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~ 147 (405)
+.+..+.+-|++.++.++..|+..|-.+..........++....++..|+.++....++.++..++..+...+..
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 457888888999999999999999988876543344556778899999999998844489999999988887653
No 276
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=88.47 E-value=19 Score=32.77 Aligned_cols=159 Identities=11% Similarity=0.087 Sum_probs=98.5
Q ss_pred ccHHHHHhhh-cCC---ChHHHHHHHHHHHHhccCChhHHHHHHhcC-----------ChHHHHHhcC------CCCcch
Q 015537 243 PALPALAHLI-HSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAG-----------VFPRLAEFLM------HPSPSV 301 (405)
Q Consensus 243 ~~l~~L~~ll-~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-----------~l~~L~~lL~------~~~~~v 301 (405)
+++..|+.++ ... .-+++..|+.++..+..++++....+++.- ....++..|- +.++--
T Consensus 34 pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~ 113 (312)
T PF04869_consen 34 PVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYR 113 (312)
T ss_dssp EHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHH
T ss_pred cHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHH
Confidence 4455544443 322 467889999999988887777655554421 0112333333 223434
Q ss_pred HHHHHHHHhHhhcCChhhHHHHHhc------------CchHHHHHhhcC----CCchhHHHHHHHHHHHHhcCCHHHHHH
Q 015537 302 LIPALRTVGNIVTGDDMQTQCVIEY------------QALPCLLNLLSG----NYKKSIKKEACWTVSNITAGNREQIQV 365 (405)
Q Consensus 302 ~~~a~~~l~nl~~~~~~~~~~~~~~------------g~l~~L~~ll~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (405)
.-.|+.++..+...++..++.+..- ..+..+..+|.. ..+++++-.-...|+--..+++..+..
T Consensus 114 ~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~ 193 (312)
T PF04869_consen 114 CWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVND 193 (312)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 4568888999998887776655421 245556666655 336777777666777777789999999
Q ss_pred HHHh-CcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 366 IMHV-HAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 366 l~~~-~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
+++. ..++.|++......+. ++-|+.-++..||-|.
T Consensus 194 FL~~~s~l~~Li~~~~~~~~~--~~~VqGL~A~LLGicy 230 (312)
T PF04869_consen 194 FLSEGSNLQSLIEFSNQSSSE--DVLVQGLCAFLLGICY 230 (312)
T ss_dssp HHCSTTHHHHHHHHHS--TCC--CHHHHHHHHHHHHHHH
T ss_pred HHcCcchHHHHHHHhhcCCCC--cchHHHHHHHHHHHHH
Confidence 9865 5899999985444433 6789999999998764
No 277
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.18 E-value=33 Score=35.06 Aligned_cols=314 Identities=12% Similarity=0.090 Sum_probs=168.4
Q ss_pred HHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHH--hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537 75 LPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (405)
Q Consensus 75 l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~--~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~ 151 (405)
...+++.++.. |.-++..+++.++-++..- +-.-+.+. -.+....+.+++..-..-+.+...+..|+-+.....+.
T Consensus 528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~ 606 (978)
T KOG1993|consen 528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH 606 (978)
T ss_pred HHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 56677777765 7788888888888776432 22222222 13344555566654332466777777777765543333
Q ss_pred HHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCC----ChhhHHHHHhcCChHHHHHhhhC---CCchhHHHHH
Q 015537 152 TKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGD----SPRCRDLVLSQGGLVPLLAQLNG---QPKLSMLRNA 222 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~--~~~~~i~~~a~~~L~nl~~~----~~~~~~~i~~~~~i~~L~~~l~~---~~~~~~~~~a 222 (405)
..... ..+++.|-.+=+ .+.+-++.+.+.+|.|+... ++.+.. ++-+++.+-.+ .+..-+.+.+
T Consensus 607 I~P~~-~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~L~EDg 679 (978)
T KOG1993|consen 607 IAPYA-STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVYLLEDG 679 (978)
T ss_pred hhHHH-HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceeehhhhH
Confidence 22111 011222211111 24566788888888888621 221111 22333443311 1223345555
Q ss_pred HHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHH-HHhccCChhHHHHHHhcCChHHHHHhcCCCCcch
Q 015537 223 TWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301 (405)
Q Consensus 223 ~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v 301 (405)
.......-.+.+. -....-+++|.+...+..+.+..+. ++..+ +|+.-.+... -.....|++..+..++.+-..+-
T Consensus 680 meLW~~~L~n~~~-l~p~ll~L~p~l~~~iE~ste~L~t-~l~Ii~sYilLd~~~f-l~~y~~~i~k~~~~~l~dvr~eg 756 (978)
T KOG1993|consen 680 MELWLTTLMNSQK-LTPELLLLFPHLLYIIEQSTENLPT-VLMIISSYILLDNTVF-LNDYAFGIFKKLNDLLDDVRNEG 756 (978)
T ss_pred HHHHHHHHhcccc-cCHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHHHhhHHH
Confidence 5544444444332 2233357778888887654333222 22222 2333233332 22344588889999997766666
Q ss_pred HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHH---
Q 015537 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQVIMH-VHAFSIIV--- 376 (405)
Q Consensus 302 ~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~--- 376 (405)
....+.++-.+...++ ........++++.+..-+-.+ +.|.+...-..+++.+.-.+++..-.++. .+-...++
T Consensus 757 l~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~l 835 (978)
T KOG1993|consen 757 LQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAML 835 (978)
T ss_pred HHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHH
Confidence 7778888877776555 444456677888777665433 25677777777778777777877766663 33222222
Q ss_pred -HHHhcccccchhhhHHHHHHHHHh
Q 015537 377 -AFFFMFLHFFFGAIIYKLAIWLCL 400 (405)
Q Consensus 377 -~lL~~~~~~~~~~~vr~~A~~al~ 400 (405)
..=-.-.+.-++|+-||--+.|++
T Consensus 836 i~~WI~~~~~I~~~k~rKl~~Lals 860 (978)
T KOG1993|consen 836 IGNWILLFDHINHPKDRKLNTLALS 860 (978)
T ss_pred HHHHHHHcccCCCHHHhhHHHHHHH
Confidence 211111222235677776666654
No 278
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=88.01 E-value=1.8 Score=33.91 Aligned_cols=74 Identities=9% Similarity=0.001 Sum_probs=56.9
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHH-HHHHHHHHHHHHhc
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-LQFEAAWALTNIAS 146 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~-~~~~a~~~L~ni~~ 146 (405)
+.+..+.+.|++.++.+|..|+..+-.+......+...++...+++..|..++....... ++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 457888888999999999999999988876542344456677889999999998765333 88888887777654
No 279
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=87.71 E-value=22 Score=34.11 Aligned_cols=302 Identities=12% Similarity=0.115 Sum_probs=128.1
Q ss_pred HHHHHHhhcCC---ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc--
Q 015537 75 LPVMVAGVWSN---DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS-- 149 (405)
Q Consensus 75 l~~l~~~l~s~---~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~-- 149 (405)
+..|...+..+ ..+-..+|+.-+...+...-.+....++ ..++..+....+++++|..-.....+++.+.....
T Consensus 28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il-~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~ 106 (435)
T PF03378_consen 28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEIL-QHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA 106 (435)
T ss_dssp HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHH-HHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC
Confidence 56666666542 2333444443333332222122223332 22455555556666657665555444444433211
Q ss_pred -hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh--hhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHH
Q 015537 150 -EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP--RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (405)
Q Consensus 150 -~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~--~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l 226 (405)
...-.-++...+|.+..+|+.+-.+....+...|+.+....+ ..-+.. ...+++|+.-- -.....-.-..+..|
T Consensus 107 ~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y--~~L~~~Ll~p~-lWe~~gniPalvrLL 183 (435)
T PF03378_consen 107 DPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAY--KQLFPPLLSPA-LWERRGNIPALVRLL 183 (435)
T ss_dssp GHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTT--GGGHHHHTSGG-GGGSTTTHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHH--HHHHHHHcCcc-hhccCCCcCcHHHHH
Confidence 111123455778999999998777777777777777764333 111110 11222222211 011111112222333
Q ss_pred HHhhcCCCCC--ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChh-HHHHHHhcCChHHHHHhcC-CCCcchH
Q 015537 227 SNFCRGKPQP--PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND-KIQAVIEAGVFPRLAEFLM-HPSPSVL 302 (405)
Q Consensus 227 ~~l~~~~~~~--~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~L~~lL~-~~~~~v~ 302 (405)
..+....+.. ....+.+++...-+++.+...+ ..+...|..+...-+. ..+..+ ..++..+..-|+ +..+...
T Consensus 184 ~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf~ 260 (435)
T PF03378_consen 184 QAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEKFV 260 (435)
T ss_dssp HHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHHH
T ss_pred HHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHHH
Confidence 3333222111 1123356666666777665322 3344444444433221 111111 123334444443 4444555
Q ss_pred HHHHHHHhHhhc--CChhhHHHH--HhcCchHHHHHh-----hcCCCchhHHHHHHHHHHHHhcCCHHHHHH--HHHhCc
Q 015537 303 IPALRTVGNIVT--GDDMQTQCV--IEYQALPCLLNL-----LSGNYKKSIKKEACWTVSNITAGNREQIQV--IMHVHA 371 (405)
Q Consensus 303 ~~a~~~l~nl~~--~~~~~~~~~--~~~g~l~~L~~l-----l~~~~~~~v~~~a~~~L~nl~~~~~~~~~~--l~~~~~ 371 (405)
...+..++.++. |.+...+.+ ++.|+...+..- +..-..+.-||.++-.+.++...++..... -.-...
T Consensus 261 ~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~l 340 (435)
T PF03378_consen 261 KRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWPPL 340 (435)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHH
Confidence 555555554442 233332222 234555444442 122113456788888888877654432222 112345
Q ss_pred HHHHHHHHhccc
Q 015537 372 FSIIVAFFFMFL 383 (405)
Q Consensus 372 i~~L~~lL~~~~ 383 (405)
+..|+.++....
T Consensus 341 l~~Ll~ll~~p~ 352 (435)
T PF03378_consen 341 LEALLKLLERPP 352 (435)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHcCCc
Confidence 666777776543
No 280
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=87.43 E-value=8.7 Score=30.04 Aligned_cols=75 Identities=12% Similarity=-0.017 Sum_probs=61.3
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhC--CCchhHHHHHHHHHHHhhcCCC
Q 015537 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNG--QPKLSMLRNATWTLSNFCRGKP 234 (405)
Q Consensus 160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~--~~~~~~~~~a~~~l~~l~~~~~ 234 (405)
++..|-.-|.++++.++..|+..|-.+...+ +.++..+....++..+++++.. ..+..++..++..+.......+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5677778888899999999999999998776 4477888877888889999855 4588999999999888877653
No 281
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.94 E-value=24 Score=36.28 Aligned_cols=251 Identities=14% Similarity=0.124 Sum_probs=150.7
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 015537 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (405)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~ 155 (405)
..+=+.++++....|.+++..+-++-... | -..++.+ .+=.|.+....++ -.+|...+++...-- .+...+
T Consensus 27 ~~ldkGlr~~~t~eqpeavvr~~RLFek~--P-fpifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q~g----~hln~v 97 (970)
T KOG1988|consen 27 MELDKGLRSGKTSEQPEAVVRFPRLFEKY--P-FPIFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQSG----KHLNKV 97 (970)
T ss_pred HHHhhcccccccccchHHHHHHHHHHhhC--C-chhhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhhcc----ccchhh
Confidence 44555777777778888887777775332 2 2233322 2445666666777 688888887777322 222223
Q ss_pred Hh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537 156 ID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (405)
Q Consensus 156 ~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 234 (405)
.. ...+..+..+..+.|+.-+..++..+|.++.--| +.+....++..-..+.+.--.+.++.+...++....
T Consensus 98 ~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk 170 (970)
T KOG1988|consen 98 LNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSK 170 (970)
T ss_pred hhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhh
Confidence 22 1334444455567899999999999999864433 334455566654355555556777777777765432
Q ss_pred CCChhhhhccHHHHHhhhcCCC--hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-CCCCcchHHHHHHHHhH
Q 015537 235 QPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGN 311 (405)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~n 311 (405)
....++...+..++...| +......+.+++.|...... ...+......++ +++..+....-+.++.+
T Consensus 171 ----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~------A~ra~~l~m~lv~~tps~d~~v~fL~stT~ 240 (970)
T KOG1988|consen 171 ----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATG------ASRAFGLCMSLVSGTPSIDRVVAFLYSTTN 240 (970)
T ss_pred ----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhh------hHHHHHHHHHHhcCCCcccceeeehhhhHH
Confidence 122234445555565544 45667777888888644321 112334556666 34444555566777777
Q ss_pred hhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 312 l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
++...- ..-.+-++.+.+++..+....++..+.|.+-+++.
T Consensus 241 Lasrs~-----~ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 241 LASRSL-----VAISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHH-----HHhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 774332 12235677888888855467788889999988864
No 282
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=86.82 E-value=27 Score=32.65 Aligned_cols=92 Identities=22% Similarity=0.219 Sum_probs=60.8
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-CCCCh
Q 015537 161 VPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF 238 (405)
Q Consensus 161 i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~ 238 (405)
+.+++.-|.+ ....++..++--|+.-+.+ +.++..+..+|....+++.+...++..+...++.++..+...+ +....
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 5566665653 4567898888888888875 4588999999999999999955555435555555555544443 33333
Q ss_pred hhhhccHHHHHhhhc
Q 015537 239 DQVSPALPALAHLIH 253 (405)
Q Consensus 239 ~~~~~~l~~L~~ll~ 253 (405)
......+..++.++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 233455666677766
No 283
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=86.74 E-value=3.4 Score=32.35 Aligned_cols=74 Identities=14% Similarity=0.083 Sum_probs=57.1
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCch-HHHHhcCcHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcC
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLRE--DYPQLQFEAAWALTNIASG 147 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~~~g~l~~Li~lL~~~--~~~~~~~~a~~~L~ni~~~ 147 (405)
+.+..+.+.|+++++.+|..|+..|-.+.... ..+. ..+....++..|+.++... .++.++..++..+.+.+..
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNc-g~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNC-GKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC-ChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45788888899999999999999998887654 3434 4555558888899999763 3478999999888877653
No 284
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.62 E-value=58 Score=36.87 Aligned_cols=273 Identities=15% Similarity=0.115 Sum_probs=139.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
+..++..+...++..+..+...+..++..-+..+-- .+....+++-|.+..++-.|.--..+++-+-......-..
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~----a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFV----ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccccchH----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 455566677778888888888888876543222211 2235556666665543554544444444443321111100
Q ss_pred HHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC--chhHHHHHHHHHH----
Q 015537 155 VIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLS---- 227 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~--~~~~~~~a~~~l~---- 227 (405)
-.....+..+..+..++ +|.|+.-++.++.-+...........++. .+..+..++...+ ..++....-.++.
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence 11123456677777764 56999999999998886553333332222 2333334443322 4455555555444
Q ss_pred --HhhcCC-----CCCC---hhh-hhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC
Q 015537 228 --NFCRGK-----PQPP---FDQ-VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296 (405)
Q Consensus 228 --~l~~~~-----~~~~---~~~-~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 296 (405)
.+.+.- ++.. ... ....+-...-++.++|+.++..+..++-++--..+.... -.-+++.+..+|.+
T Consensus 1033 ~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcc
Confidence 443321 1221 111 123333344455667899999999998887544332111 11234566666655
Q ss_pred CCcchHHHHHHHHhHhhcCCh-----------------hhHH-HHH-hcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 015537 297 PSPSVLIPALRTVGNIVTGDD-----------------MQTQ-CVI-EYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (405)
Q Consensus 297 ~~~~v~~~a~~~l~nl~~~~~-----------------~~~~-~~~-~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl 355 (405)
...-.+...+.++.-+..+.. ...+ .+. +.|+=-.+..++....+.+..+....++.++
T Consensus 1110 ~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~ 1187 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRM 1187 (2067)
T ss_pred hhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 444444444444433333221 0011 111 3444455555665554666777777777774
No 285
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.42 E-value=11 Score=29.58 Aligned_cols=74 Identities=16% Similarity=0.091 Sum_probs=58.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhhCCCchh-HHHHHHHHHHHhhcCC
Q 015537 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLS-MLRNATWTLSNFCRGK 233 (405)
Q Consensus 160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~L~~~l~~~~~~~-~~~~a~~~l~~l~~~~ 233 (405)
++..|..-|.++++.++..|+..|-.+... ++.++..+...+++..|..++....+.. ++..++..+..-....
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 456677778888999999999999999876 4668888888889999999886555434 8888888887776654
No 286
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=86.35 E-value=0.82 Score=27.08 Aligned_cols=38 Identities=32% Similarity=0.424 Sum_probs=24.4
Q ss_pred HhhhhcCCCCCchHHhhhhhHHHHHHHHHhhhHHHHhhh
Q 015537 11 SRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKR 49 (405)
Q Consensus 11 ~r~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R 49 (405)
+|...||+..++.+..+|| +...+.-|.+|-+.++..|
T Consensus 2 PR~sqYK~~~~~~~Q~eRR-~~~Le~QK~kR~d~~~~aR 39 (40)
T PF11538_consen 2 PRLSQYKNKGSALDQEERR-REFLERQKNKRLDYVNHAR 39 (40)
T ss_dssp TTCSCTT-TTTSCSHHHHH-HHHHHHHHSHHSHHHHHHH
T ss_pred ccHHHhhcccchHhHHHHH-HHHHHHHHHHhHHHHHhcc
Confidence 5777899865555554444 4455777888877777665
No 287
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=86.11 E-value=30 Score=32.51 Aligned_cols=218 Identities=12% Similarity=0.053 Sum_probs=114.9
Q ss_pred CHHHHHHHHHHHHHhhCCChhhHHHHHhc---CChHHHHHhhh-CCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHH
Q 015537 172 SDDVREQAVWALGNIAGDSPRCRDLVLSQ---GGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA 247 (405)
Q Consensus 172 ~~~i~~~a~~~L~nl~~~~~~~~~~i~~~---~~i~~L~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~ 247 (405)
+..+..+|+.+|+.+..+..-. ..+-.. -.+...+..+. ...+..+....+|+|+.--.............++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~-~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIV-STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHH-hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 6789999999999998654322 222111 12344455552 344667888888888753322111111222233333
Q ss_pred HHhhhc-CCChHHHHHHHHHHHHhccCChhHHHHHHhc-CChHHHHHhcCCCCcchHHHHHHHHhHhhc--CCh-hhH--
Q 015537 248 LAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIVT--GDD-MQT-- 320 (405)
Q Consensus 248 L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~--~~~-~~~-- 320 (405)
+..+-+ -+...+..+.+.++.++....+... .... -.++.++..+-+....++..|...+-.+.. +.+ ...
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M--~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~ 215 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQM--IKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS 215 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 333332 3457788899999999987766532 2222 367888888877777777765555443331 221 111
Q ss_pred -HHHHhc----C-----chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhh
Q 015537 321 -QCVIEY----Q-----ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAI 390 (405)
Q Consensus 321 -~~~~~~----g-----~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~ 390 (405)
....+. + +.+.|..++.+. +...----.|..--+.-+++. +-.-..+...+.+.....+. .++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~----~~~w~~~n~wL~v~e~cFn~-~d~~ 289 (372)
T PF12231_consen 216 VLEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSR----LDSWEHLNEWLKVPEKCFNS-SDPQ 289 (372)
T ss_pred HHHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCch----hhccHhHhHHHHHHHHHhcC-CCHH
Confidence 112222 2 334467777774 333333344544444334332 22334455555555433333 2457
Q ss_pred HHHHHHHH
Q 015537 391 IYKLAIWL 398 (405)
Q Consensus 391 vr~~A~~a 398 (405)
+|.+|..|
T Consensus 290 ~k~~A~~a 297 (372)
T PF12231_consen 290 VKIQAFKA 297 (372)
T ss_pred HHHHHHHH
Confidence 88877654
No 288
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=85.46 E-value=15 Score=30.44 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=61.8
Q ss_pred hhccHHHHHhhhcCCChHHHHHHHHHHHHhccC-ChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhh
Q 015537 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (405)
Q Consensus 241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 319 (405)
....+|.+++-|...+...+--|...+..|... ..+.+-.++ ..++..+...|.+.++++...++.+|..++...+..
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 468899999999888877777777777777665 444333222 356777888889999999999999999998766644
Q ss_pred HHHHH
Q 015537 320 TQCVI 324 (405)
Q Consensus 320 ~~~~~ 324 (405)
-+.++
T Consensus 115 G~aLv 119 (183)
T PF10274_consen 115 GEALV 119 (183)
T ss_pred hHHHH
Confidence 44443
No 289
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=85.46 E-value=42 Score=38.36 Aligned_cols=213 Identities=11% Similarity=0.060 Sum_probs=117.1
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCh---hhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhh
Q 015537 164 FVKLLYSPSDDVREQAVWALGNIAGDSP---RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (405)
Q Consensus 164 L~~lL~~~~~~i~~~a~~~L~nl~~~~~---~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 240 (405)
++..-.+++..+...|+..|..++...- +....-.+...+.++..++.+..+.+++..++.|+.++..........-
T Consensus 1142 f~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSG 1221 (1780)
T PLN03076 1142 FVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSG 1221 (1780)
T ss_pred HHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 4444344577788888888888874221 1111122345678888888778889999999999998877642211112
Q ss_pred hhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHh--cC----ChHHHHHhcCCC-CcchHHHHHHHHhHhh
Q 015537 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE--AG----VFPRLAEFLMHP-SPSVLIPALRTVGNIV 313 (405)
Q Consensus 241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~----~l~~L~~lL~~~-~~~v~~~a~~~l~nl~ 313 (405)
...++..+.......++.+...+..++..+....- ..+.. .+ .+..+..+.... +.++-..|+..|.+++
T Consensus 1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~ 1298 (1780)
T PLN03076 1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCA 1298 (1780)
T ss_pred cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHH
Confidence 22233333333334567777777777776653211 11111 12 233333333332 3555566666666442
Q ss_pred c----CCh-----------------------hhH-----HHHHhcCchHHHH---HhhcCCCchhHHHHHHHHHHHHhc-
Q 015537 314 T----GDD-----------------------MQT-----QCVIEYQALPCLL---NLLSGNYKKSIKKEACWTVSNITA- 357 (405)
Q Consensus 314 ~----~~~-----------------------~~~-----~~~~~~g~l~~L~---~ll~~~~~~~v~~~a~~~L~nl~~- 357 (405)
. +.- ... ........+|.|. .+..++ +++||..|.-+|-.+..
T Consensus 1299 ~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~ 1377 (1780)
T PLN03076 1299 TKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRN 1377 (1780)
T ss_pred HHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHH
Confidence 1 000 000 0000122344444 445566 89999999999888875
Q ss_pred -C---CHHHHHHHHHhCcHHHHHHHHhc
Q 015537 358 -G---NREQIQVIMHVHAFSIIVAFFFM 381 (405)
Q Consensus 358 -~---~~~~~~~l~~~~~i~~L~~lL~~ 381 (405)
| +++....+++ +++.++++.+..
T Consensus 1378 yG~~Fs~~~W~~if~-~VLFPIFd~l~~ 1404 (1780)
T PLN03076 1378 HGHLFSLPLWERVFE-SVLFPIFDYVRH 1404 (1780)
T ss_pred hhccCCHHHHHHHHH-HHHHHHHHHHHH
Confidence 2 4555666665 666677666653
No 290
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.31 E-value=73 Score=36.16 Aligned_cols=211 Identities=17% Similarity=0.087 Sum_probs=106.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 015537 120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVL 198 (405)
Q Consensus 120 ~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~ 198 (405)
.++..|...+ |..+..+..+++.++..-+. ..++ .+..+.++.-+.+ .++..|..-.-++|.+-.+....-..-.
T Consensus 880 l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~--~~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qh 955 (2067)
T KOG1822|consen 880 LIVNSLINPN-PKLRCAAAEALARLAQVVGS--APFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQH 955 (2067)
T ss_pred HHhhhhccCC-hHHHHHHHHHHHHHHHhccc--cchH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchh
Confidence 3344444444 66666666666666553111 1111 1234455554544 4554454444555555432211111111
Q ss_pred hcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC-----
Q 015537 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG----- 273 (405)
Q Consensus 199 ~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~----- 273 (405)
....+..++.+..++.++.|++.++.++..+...........+...+..+..++-+..+ ...+.--+++....+
T Consensus 956 l~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~~~~ 1034 (2067)
T KOG1822|consen 956 LNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDDDED 1034 (2067)
T ss_pred cccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCc-chhhhhhhhccccccchhHH
Confidence 12235566666656667799999999999988876444455666777766666643221 222222222222111
Q ss_pred ------------Ch--hHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC
Q 015537 274 ------------TN--DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN 339 (405)
Q Consensus 274 ------------~~--~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~ 339 (405)
+. +.... +..-.+-...-+++++++.++..++.++.++-...+.+.. -.-+++.+..++.++
T Consensus 1035 alittlgpeL~~N~~~d~t~~-~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s~ 1110 (2067)
T KOG1822|consen 1035 ALITTLGPELGPNGDKDSTST-LRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSSS 1110 (2067)
T ss_pred HHHHhcccccCCCCcccchhH-HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcch
Confidence 11 11111 1111222333345677888999999999888765543221 112556666666655
No 291
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=85.02 E-value=32 Score=31.81 Aligned_cols=213 Identities=15% Similarity=0.077 Sum_probs=108.1
Q ss_pred CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-C
Q 015537 158 HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-P 234 (405)
Q Consensus 158 ~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~ 234 (405)
..++..|..++.. .++......+.+++.=+... ... ...++..+.+=+ .++.+.+++.-+..+....... .
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~-----~~~~~~~~~kGl-~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL-----PKKVVDAFKKGL-KDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC-----CHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHHhhccC
Confidence 3456667777765 56666666766666543111 111 111233444444 5556668888777777777622 2
Q ss_pred CCChhhhhccHHHHHhhhc----CCChHHH---HHHHHHHHHhccCChhHHHH--H------HhcC----ChHHHHHhcC
Q 015537 235 QPPFDQVSPALPALAHLIH----SNDDEVL---TDACWALSYLSDGTNDKIQA--V------IEAG----VFPRLAEFLM 295 (405)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~----~~d~~v~---~~a~~~l~~l~~~~~~~~~~--~------~~~~----~l~~L~~lL~ 295 (405)
.........++|.|...++ ++-+... ..++.++..+.....+.... . .+.. .-+.+..-+
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl- 173 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL- 173 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc-
Confidence 2334445677777777763 2211111 11111111121111111111 0 0000 001111111
Q ss_pred CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHH
Q 015537 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSI 374 (405)
Q Consensus 296 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 374 (405)
.+++.....++++..+..+.+.....-....+-..++.++.++. .+.+|+.|.-++..+...+++. +...++..
T Consensus 174 -~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~ 248 (339)
T PF12074_consen 174 -ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISG 248 (339)
T ss_pred -CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHH
Confidence 34445566777777766544322211112234566777776663 6889999999999999887774 44556666
Q ss_pred HHHHHhcc
Q 015537 375 IVAFFFMF 382 (405)
Q Consensus 375 L~~lL~~~ 382 (405)
+.+.|...
T Consensus 249 l~~~l~~~ 256 (339)
T PF12074_consen 249 LWKWLSSS 256 (339)
T ss_pred HHHHHHhc
Confidence 66666544
No 292
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=84.73 E-value=6.1 Score=31.39 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=61.3
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
++..|..-|.+.++.++..|+..|-.+..+. ..++..+...+++..|.+++....+..|+..++..+...+...
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 5667777778889999999999999988654 4577888888899999999955578999999999888887765
No 293
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=84.66 E-value=27 Score=30.63 Aligned_cols=117 Identities=24% Similarity=0.280 Sum_probs=65.6
Q ss_pred hccHHHHHhhhcCCChH--------HHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC--CcchHHHHHHHHhH
Q 015537 242 SPALPALAHLIHSNDDE--------VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGN 311 (405)
Q Consensus 242 ~~~l~~L~~ll~~~d~~--------v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~n 311 (405)
..++|.++.++..++.. +-...-.+++.++. |=++.+..++.++ +.-++..|+.++..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 36888999999765531 22222333333444 4455566666554 34688899999999
Q ss_pred hhcCChhhHHHHHhcCchHHHHHh-hcCCCchhHHHHHHHHHHHHhc----CCHHHHHHHHHhCcHHHHH
Q 015537 312 IVTGDDMQTQCVIEYQALPCLLNL-LSGNYKKSIKKEACWTVSNITA----GNREQIQVIMHVHAFSIIV 376 (405)
Q Consensus 312 l~~~~~~~~~~~~~~g~l~~L~~l-l~~~~~~~v~~~a~~~L~nl~~----~~~~~~~~l~~~~~i~~L~ 376 (405)
++...+..++.+++. +..++.. +... +..+ --+.+++++. .--..++.+.+.|+++.-+
T Consensus 140 l~~~~~~~Re~vi~~--f~~ll~~~l~~~-~~~~---~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~~ 203 (249)
T PF06685_consen 140 LVHEGPISREEVIQY--FRELLNYFLERN-PSFL---WGSLVADICDLYPEELLPEIRKAFEDGLVDPSF 203 (249)
T ss_pred HHHcCCCCHHHHHHH--HHHHHHHHhccC-chHH---HHHHHHHHHhcCHHHhHHHHHHHHHcCCCCccc
Confidence 998777666655542 2222222 3222 2221 1223344443 2344467777888887644
No 294
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=84.49 E-value=3.9 Score=32.29 Aligned_cols=74 Identities=7% Similarity=-0.013 Sum_probs=56.6
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhc
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR-----EDYPQLQFEAAWALTNIAS 146 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~-----~~~~~~~~~a~~~L~ni~~ 146 (405)
+++..+.+.|++.++.++..|+..|-.+...-......++...+++..|++++.. ..++.++..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4578888899999999999999998888754423344567778899999999963 1237888888888877654
No 295
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=84.18 E-value=21 Score=32.99 Aligned_cols=217 Identities=18% Similarity=0.119 Sum_probs=108.1
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 015537 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (405)
Q Consensus 113 ~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~ 192 (405)
+...++..|..++....++.....++.+++.-...- ..-+...++..+..-+++..+.+|..-+..++.+....+.
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 444567778888876554666666666666543321 0111224567777778877777999888888888751110
Q ss_pred hHHHHHhcCChHHHHHhhh---CCCchhHH---HHHHHHHHHhhcCC-CCCChh------hhhccHHH-H--HhhhcC-C
Q 015537 193 CRDLVLSQGGLVPLLAQLN---GQPKLSML---RNATWTLSNFCRGK-PQPPFD------QVSPALPA-L--AHLIHS-N 255 (405)
Q Consensus 193 ~~~~i~~~~~i~~L~~~l~---~~~~~~~~---~~a~~~l~~l~~~~-~~~~~~------~~~~~l~~-L--~~ll~~-~ 255 (405)
....-.-..+++.|+..+. .++-.... ..++.++..++... +..... ...+-=|. + -+++.. .
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~ 174 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA 174 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence 0011111235666776663 12211111 11111111121111 000000 00000000 0 012222 3
Q ss_pred ChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC--CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHH
Q 015537 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLL 333 (405)
Q Consensus 256 d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~ 333 (405)
+++-....+.++..+..+.......-....+-..++.++.+. .+.+|..|+.++..+...++.. +...++..+-
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~ 250 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLW 250 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHH
Confidence 445555666666665544332211111223456788888777 8899999999999999887763 2223444555
Q ss_pred Hhhc
Q 015537 334 NLLS 337 (405)
Q Consensus 334 ~ll~ 337 (405)
.++.
T Consensus 251 ~~l~ 254 (339)
T PF12074_consen 251 KWLS 254 (339)
T ss_pred HHHH
Confidence 5554
No 296
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=83.97 E-value=32 Score=31.00 Aligned_cols=195 Identities=11% Similarity=0.084 Sum_probs=128.6
Q ss_pred HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCC---Chhhh---hccHHHHHhhhcCCChHHHHHHHHHHH
Q 015537 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP---PFDQV---SPALPALAHLIHSNDDEVLTDACWALS 268 (405)
Q Consensus 195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~---~~~l~~L~~ll~~~d~~v~~~a~~~l~ 268 (405)
..+...|.+..++..+ ...+.+.+..++....++-+..-.. ....+ ..++..++..-.. .+++...+-..+.
T Consensus 73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 4556778888888888 7778888999999999998765221 12222 2333333333111 1444433333333
Q ss_pred HhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcC----chHHHHHhhcCCCchhH
Q 015537 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ----ALPCLLNLLSGNYKKSI 344 (405)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g----~l~~L~~ll~~~~~~~v 344 (405)
... ..+...+.+..+.-+......+..+.-++..-|..+.-.+.+........++..+ +.++--.++.++ +.-+
T Consensus 151 Eci-rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt 228 (342)
T KOG1566|consen 151 ECI-RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT 228 (342)
T ss_pred HHH-hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence 332 3344556677777788888888888888888899999888876665555555444 255577788888 9999
Q ss_pred HHHHHHHHHHHhcC--CHHH-HHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHH
Q 015537 345 KKEACWTVSNITAG--NREQ-IQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWL 398 (405)
Q Consensus 345 ~~~a~~~L~nl~~~--~~~~-~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~a 398 (405)
++.+...++.+..+ +... .+++-+..-+..++.+|...+.. ++-+|-..
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskn-----iQ~eAFhv 280 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKN-----IQLEAFHV 280 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCcccc-----chHHHHHH
Confidence 99999999999863 3322 34444567788889989776544 77776543
No 297
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=83.70 E-value=15 Score=26.95 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhhccCCCCchHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHH
Q 015537 88 GVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (405)
Q Consensus 88 ~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~ 166 (405)
+++..|+..+..=+... --....+. ..+++..|++.++.++ ...+..++..|..++.. +.....+.+.|+...|.+
T Consensus 2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~k 78 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSK 78 (98)
T ss_pred hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHH
Confidence 34555554443222221 22223333 4567888888888887 56889999999998887 777778888899998777
Q ss_pred hhCCCCHHHHHHHHHH
Q 015537 167 LLYSPSDDVREQAVWA 182 (405)
Q Consensus 167 lL~~~~~~i~~~a~~~ 182 (405)
+=...++..+...-..
T Consensus 79 lr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 79 LRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHhcCCHHHHHHHHHH
Confidence 7666666665544433
No 298
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=83.41 E-value=31 Score=32.32 Aligned_cols=154 Identities=18% Similarity=0.076 Sum_probs=96.3
Q ss_pred HHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhc----------CCChHHHHHHHHHHHHhccC
Q 015537 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----------SNDDEVLTDACWALSYLSDG 273 (405)
Q Consensus 204 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~----------~~d~~v~~~a~~~l~~l~~~ 273 (405)
..+...|.+......+..++.++.-|++....-.-......+..|+.+.. ..|..+...++.+|.|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 44556664444556666777777778777533333333444444444431 23568999999999999999
Q ss_pred ChhHHHHHHhcCChHHHHHhcCC-----CCcchHHHHHHHHhHhhcC-ChhhHHHHHhcCchHHHHHhhcCCC-------
Q 015537 274 TNDKIQAVIEAGVFPRLAEFLMH-----PSPSVLIPALRTVGNIVTG-DDMQTQCVIEYQALPCLLNLLSGNY------- 340 (405)
Q Consensus 274 ~~~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~g~l~~L~~ll~~~~------- 340 (405)
+....+...+......+.+.+.. -...+...=++.|--+..- .+...+.+.+.++++.+-+++.+..
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n 207 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEIN 207 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence 98877777877776666666521 1112333334444333332 3455566678899999999998641
Q ss_pred -------chhHHHHHHHHHHHHhc
Q 015537 341 -------KKSIKKEACWTVSNITA 357 (405)
Q Consensus 341 -------~~~v~~~a~~~L~nl~~ 357 (405)
+....-++..++.|++.
T Consensus 208 ~~~l~pqe~n~a~EaLK~~FNvt~ 231 (532)
T KOG4464|consen 208 VPPLNPQETNRACEALKVFFNVTC 231 (532)
T ss_pred CCCCCHHHHHHHHHHHHHHhheee
Confidence 12355678888888886
No 299
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=82.32 E-value=13 Score=29.32 Aligned_cols=74 Identities=18% Similarity=0.122 Sum_probs=57.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchh---HHHHHHHHHHHhhcCC
Q 015537 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLS---MLRNATWTLSNFCRGK 233 (405)
Q Consensus 160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~---~~~~a~~~l~~l~~~~ 233 (405)
++..|..-|.+.++.++..|+..|-.+..++ +.++..+....++..|..++....... |+..+...+.......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 4566777788889999999999999988765 678888888888889999886544433 8888887777766654
No 300
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=82.21 E-value=3.8 Score=35.26 Aligned_cols=79 Identities=22% Similarity=0.213 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhCC-------ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh-hHHHHHhcCC
Q 015537 132 QLQFEAAWALTNIASGTSEHTKVVIDHG-------AVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR-CRDLVLSQGG 202 (405)
Q Consensus 132 ~~~~~a~~~L~ni~~~~~~~~~~~~~~g-------~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~-~~~~i~~~~~ 202 (405)
.-|..|+.+|+.++-. +.+.+.++..+ .+..|+++|.. .++-.++.|+-.|.+++..+.. ++....+.+.
T Consensus 139 SPqrlaLEaLcKLsV~-e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVI-ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhee-ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 4589999999999876 45555555544 34556666654 6888999999999999976654 4456667888
Q ss_pred hHHHHHhhh
Q 015537 203 LVPLLAQLN 211 (405)
Q Consensus 203 i~~L~~~l~ 211 (405)
+..|+.++.
T Consensus 218 i~~Li~FiE 226 (257)
T PF12031_consen 218 ISHLIAFIE 226 (257)
T ss_pred HHHHHHHHH
Confidence 999999984
No 301
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=82.15 E-value=36 Score=30.19 Aligned_cols=181 Identities=19% Similarity=0.178 Sum_probs=103.8
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------hhhHHHHHhcCChHHHHHhhhCCC---chhHHHHHHHHHHH
Q 015537 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-------PRCRDLVLSQGGLVPLLAQLNGQP---KLSMLRNATWTLSN 228 (405)
Q Consensus 159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-------~~~~~~i~~~~~i~~L~~~l~~~~---~~~~~~~a~~~l~~ 228 (405)
|+-+.+++-+.+ +...+.++..|..+.... .+.|-.+.-.+.+|.++..+.+.. .......++..|+.
T Consensus 64 Glq~Ll~KGL~S--s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 64 GLQPLLLKGLRS--SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred hHHHHHhCccCC--CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 444444555554 344566777777776321 112223333345666666663333 12456677788999
Q ss_pred hhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHH
Q 015537 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (405)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 308 (405)
+|...+.... ..++.....--..+..+....++..|..-. .++. +...+..++.+|.++.+.++...+.+
T Consensus 142 ~a~~~~~~~L---a~il~~ya~~~fr~~~dfl~~v~~~l~~~f--~P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~i 211 (262)
T PF14225_consen 142 VAEAQGLPNL---ARILSSYAKGRFRDKDDFLSQVVSYLREAF--FPDH-----EFQILTFLLGLLENGPPWLRRKTLQI 211 (262)
T ss_pred HHHhCCCccH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--Cchh-----HHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 9965432211 122222222111233555566665554422 1121 12345689999999889999999999
Q ss_pred HhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 309 l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
|..+....+.... ...+++.++.++++++ ...+|.-+|-++..
T Consensus 212 L~~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 212 LKVLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred HHHHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 9999976654332 5566899999999877 45566666665543
No 302
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=81.98 E-value=13 Score=39.82 Aligned_cols=235 Identities=18% Similarity=0.186 Sum_probs=128.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHH--------HHHhcCCCCHHHHHHHHHHHHHHhc
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRF--------VEFLLREDYPQLQFEAAWALTNIAS 146 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~L--------i~lL~~~~~~~~~~~a~~~L~ni~~ 146 (405)
+..|++.+-+..++.|+-+..+++.++..+-...-...++..++..+ =++....-...+++.++|+|+.+..
T Consensus 79 ~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~ 158 (1549)
T KOG0392|consen 79 LEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLK 158 (1549)
T ss_pred HHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHH
Confidence 67788888889999999999999999865422222222222222111 1122211124689999999999877
Q ss_pred CCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--cCChHHHHHhhhCCCchhHHHHHHH
Q 015537 147 GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNATW 224 (405)
Q Consensus 147 ~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~L~~~l~~~~~~~~~~~a~~ 224 (405)
+..+... ...+..+.+++..++.+++.-.+-.+..... ..++.+.. ..+++..+.-+ .+.+..++..++.
T Consensus 159 ~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~aa~ 230 (1549)
T KOG0392|consen 159 HMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVAAQ 230 (1549)
T ss_pred hhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHHHH
Confidence 5332211 1245677777777766666554444433221 11122110 11334444445 6677888888888
Q ss_pred HHHHhhcCCCCCChhhhhccHHHHHhhhcCCCh--HHHHHHHHHHHHhccCCh--h-HHHHHHhcCChHHHHHhcCCCCc
Q 015537 225 TLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD--EVLTDACWALSYLSDGTN--D-KIQAVIEAGVFPRLAEFLMHPSP 299 (405)
Q Consensus 225 ~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~--~v~~~a~~~l~~l~~~~~--~-~~~~~~~~~~l~~L~~lL~~~~~ 299 (405)
++.-.....+......+..++..+...+..-|. .-.......+..++.... + ..+.-.+.|++|.+..++.+.=.
T Consensus 231 ~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~ 310 (1549)
T KOG0392|consen 231 FLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTIS 310 (1549)
T ss_pred HhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHH
Confidence 887776654333333334444444444332221 001111122233332221 1 11122335899999999988878
Q ss_pred chHHHHHHHHhHhhcCCh
Q 015537 300 SVLIPALRTVGNIVTGDD 317 (405)
Q Consensus 300 ~v~~~a~~~l~nl~~~~~ 317 (405)
.++..++..+..+....+
T Consensus 311 sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 311 SVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 888889988888876443
No 303
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=81.74 E-value=28 Score=36.08 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=72.9
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 015537 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (405)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~ 155 (405)
..+...+.++++..-...+..+..+..-+.-++.. ...-++.-..-.+..- ..+......+|..++..+++....+
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~~l 519 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLKEL 519 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 44555566677766666666666665444222222 1111222222222222 4677778889999999888887777
Q ss_pred Hh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 015537 156 ID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAG 188 (405)
Q Consensus 156 ~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~ 188 (405)
.. .+....++.++-+++.++.+.|...|....+
T Consensus 520 ~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 520 LSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 65 5889999999999999999999999999885
No 304
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=80.86 E-value=7.2 Score=40.36 Aligned_cols=122 Identities=10% Similarity=0.103 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC-CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhh
Q 015537 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL 336 (405)
Q Consensus 258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll 336 (405)
.++..+.-+++++|-..+...+ ..+|.|++-|.. ....++...+.+++.+|..-.. +-...+|.+-..|
T Consensus 946 ~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa-----m~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA-----MTDRYIPMIAASL 1015 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH-----HHHHhhHHHHHHh
Confidence 4667777889998877665544 346888888854 4556777777788888754322 2225789999999
Q ss_pred cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcH--HHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537 337 SGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAF--SIIVAFFFMFLHFFFGAIIYKLAIWLCLV 401 (405)
Q Consensus 337 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i--~~L~~lL~~~~~~~~~~~vr~~A~~al~n 401 (405)
.++ ++-||+.+...|+++... ..+--.|.+ ..+..++.. +++||+-|-+.++.
T Consensus 1016 ~Dp-~~iVRrqt~ilL~rLLq~-----~~vKw~G~Lf~Rf~l~l~D~------~edIr~~a~f~~~~ 1070 (1529)
T KOG0413|consen 1016 CDP-SVIVRRQTIILLARLLQF-----GIVKWNGELFIRFMLALLDA------NEDIRNDAKFYISE 1070 (1529)
T ss_pred cCc-hHHHHHHHHHHHHHHHhh-----hhhhcchhhHHHHHHHHccc------CHHHHHHHHHHHHH
Confidence 999 999999999999999642 222223332 233333322 24899988888764
No 305
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.76 E-value=13 Score=38.17 Aligned_cols=159 Identities=17% Similarity=0.158 Sum_probs=99.1
Q ss_pred CchHHHHhcCcHHHHHHHhcCCCC-------HHHHHHHHHHHHHHhcCCchhHHHHHhC--------CChHHHHHhhCC-
Q 015537 107 PPIEEVIRSGVVPRFVEFLLREDY-------PQLQFEAAWALTNIASGTSEHTKVVIDH--------GAVPIFVKLLYS- 170 (405)
Q Consensus 107 ~~~~~~~~~g~l~~Li~lL~~~~~-------~~~~~~a~~~L~ni~~~~~~~~~~~~~~--------g~i~~L~~lL~~- 170 (405)
+..+.+...+++..++++...+.. .++...|+.+|.-+..- |..+..+... .+|..++..-.-
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 445567777788888888765421 35667777777776666 5555444321 145544443322
Q ss_pred ---CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh--HHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccH
Q 015537 171 ---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL--VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL 245 (405)
Q Consensus 171 ---~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i--~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l 245 (405)
.+++++..|+.+|-|.....|.++...+..-+- ..=-..+...+......+.+.-+++-.++ ..++
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~---------ndGI 741 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRG---------NDGI 741 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhc---------CccH
Confidence 489999999999999988877666544321000 00000111223344566666667777666 3678
Q ss_pred HHHHhhhcCCC-----hHHHHHHHHHHHHhccCCh
Q 015537 246 PALAHLIHSND-----DEVLTDACWALSYLSDGTN 275 (405)
Q Consensus 246 ~~L~~ll~~~d-----~~v~~~a~~~l~~l~~~~~ 275 (405)
..|+++|+... ..++.-||.+|.-|+..+.
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDT 776 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH
Confidence 88889887643 5688889999999987654
No 306
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=80.49 E-value=15 Score=31.29 Aligned_cols=95 Identities=17% Similarity=0.223 Sum_probs=65.1
Q ss_pred HHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC-----CCCcchHHHHHHHHhHhhcCCh-hhHHHHHhcCchHHHHHh
Q 015537 262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-----HPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNL 335 (405)
Q Consensus 262 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-----~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~L~~l 335 (405)
.++..|..++. .++....++++.+--.+..+|. ++...++..++..||.++.+++ .....+....++|.++++
T Consensus 119 naL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 119 NALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 34444444444 4444455666655444555552 2234688999999999998665 566677788999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHhcC
Q 015537 336 LSGNYKKSIKKEACWTVSNITAG 358 (405)
Q Consensus 336 l~~~~~~~v~~~a~~~L~nl~~~ 358 (405)
+..+ +.--+.-|.+++.-+...
T Consensus 198 me~g-SElSktvaifI~qkil~d 219 (315)
T COG5209 198 MELG-SELSKTVAIFIFQKILGD 219 (315)
T ss_pred HHhh-hHHHHHHHHHHHHHHhcc
Confidence 9998 776677777887777543
No 307
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=79.51 E-value=35 Score=35.43 Aligned_cols=131 Identities=15% Similarity=0.186 Sum_probs=85.3
Q ss_pred CCCchhHHHHHHHHHHHhhcCC-CCCCh--hhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHh-cCCh
Q 015537 212 GQPKLSMLRNATWTLSNFCRGK-PQPPF--DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVF 287 (405)
Q Consensus 212 ~~~~~~~~~~a~~~l~~l~~~~-~~~~~--~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l 287 (405)
...++.....++.++.+++.-. ..+.. ....+...... ..-..+.......|..+++.+++....++. .+..
T Consensus 451 ~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~N----~~~~~~~~~~~~il~rls~~~~~~L~~l~~d~~~~ 526 (727)
T PF12726_consen 451 DSDNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQFN----KSLGQITDLISQILERLSDFDPSHLKELLSDPDAA 526 (727)
T ss_pred cCCChHHHHHHHHHHHHhccccccCCcccccCcchHHHHHH----HHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCcchh
Confidence 3455666777777777776543 11111 01111111111 111456677888999999988887777766 4889
Q ss_pred HHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 288 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
..++.++-++++++..+|...|..+.. .+ |-.+.+-.++++. -...-....|.|..++.
T Consensus 527 ~~i~s~lfsp~~~l~qaA~~llk~~~d-~~---------~R~e~i~~ll~~~-~~~tL~ai~~~l~~~~~ 585 (727)
T PF12726_consen 527 QAIWSLLFSPDDDLYQAAQDLLKQAFD-VD---------GRLEAIQALLQSN-FSPTLSAINWSLRQLTK 585 (727)
T ss_pred hHHHhheeCCChHHHHHHHHHHHHHhc-CC---------cHHHHHHHHHHHh-HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988863 22 3355566666666 55556667777777765
No 308
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=79.23 E-value=13 Score=30.16 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=72.4
Q ss_pred ChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-CCCC
Q 015537 160 AVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP 237 (405)
Q Consensus 160 ~i~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~ 237 (405)
.++.|+.+|+.+ +..++..++.+||.|-.-+|.....+... .+ ..-....+........ +..+. +...
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~---~~~~~~~~~~~~~~~l-----~~~~~~~~~e 80 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LD---SKSSENSNDESTDISL-----PMMGISPSSE 80 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CC---ccccccccccchhhHH-----hhccCCCchH
Confidence 467778888764 68999999999999976666433322111 11 0000001111111111 11111 1222
Q ss_pred hhhhhccHHHHHhhhcCCC-hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhh
Q 015537 238 FDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (405)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 313 (405)
.-...-++..|...|+++. ..-...++.++.++........- -.=..++|.++..+...+...++..+.-|+.++
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv-~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCV-PYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCch-hHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2223455666777776543 22333455555554422111111 111246788888887766678887777777765
No 309
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=78.88 E-value=19 Score=29.85 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=51.4
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-CchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 015537 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASG-TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191 (405)
Q Consensus 116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~ 191 (405)
-.+|.|++=|.... ...+..|...+..+... ..+..-.++ ..+|.++-..|.+.++++...++.+|..|+..++
T Consensus 38 ~~Lpif~dGL~Et~-~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETE-HPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccC-ccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 45788888887766 45667777766666554 222222222 2567778888889999999999999999965444
No 310
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=78.01 E-value=48 Score=30.42 Aligned_cols=179 Identities=11% Similarity=0.025 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHH-hhCC--------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 015537 132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYS--------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202 (405)
Q Consensus 132 ~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~-lL~~--------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~ 202 (405)
.++.+.+..+.......++. .. +....+|+|+. +|.+ .++++.......+..+-....+.-..+.+ .+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HH
Confidence 56667777776666653322 22 33466777766 4432 35666655555555554322222234443 36
Q ss_pred hHHHHHhhhCCC--chhHHHHHHHHHHHhhcCCCC----CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC---
Q 015537 203 LVPLLAQLNGQP--KLSMLRNATWTLSNFCRGKPQ----PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG--- 273 (405)
Q Consensus 203 i~~L~~~l~~~~--~~~~~~~a~~~l~~l~~~~~~----~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~--- 273 (405)
+.+.+.++.++. .|+.+...-..|..+...... -+......++..+...++|.+.++...++.++..+...
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 677888885433 478888888788777775321 22334456778888888999999999999998887643
Q ss_pred -ChhHHHHHHhcCChHHHH---HhcCC-CCcchHHHHHHHHhHhh
Q 015537 274 -TNDKIQAVIEAGVFPRLA---EFLMH-PSPSVLIPALRTVGNIV 313 (405)
Q Consensus 274 -~~~~~~~~~~~~~l~~L~---~lL~~-~~~~v~~~a~~~l~nl~ 313 (405)
+++....+.+.-.++.+. ..+.+ .+......-+.+|.++.
T Consensus 199 ~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 199 TNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 344455555553333333 33322 33333334444444444
No 311
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=77.99 E-value=80 Score=31.70 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHH---hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHH
Q 015537 131 PQLQFEAAWALTNIASGTSEHTKVVI---DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207 (405)
Q Consensus 131 ~~~~~~a~~~L~ni~~~~~~~~~~~~---~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~ 207 (405)
++++.-|+.+|.-+..+.+-....+. .+..+..++..+. .++..+-.++++|.|+..+ +..++.+... ...++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence 67888888888887776443332222 1234444444444 4567777899999999987 5566666543 33333
Q ss_pred Hhhh---CCCchhHHHHHHHHHHHhhcC--CCCCChhhhhccHHHHHhhhcC-CChHHHHHHHHHHHHhccCChhHHHHH
Q 015537 208 AQLN---GQPKLSMLRNATWTLSNFCRG--KPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAV 281 (405)
Q Consensus 208 ~~l~---~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~ 281 (405)
..+. ..++..++...+....|++-. ....+......+...+..++.. +|-+.....+-||++|+..+....+..
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A 713 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLA 713 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHH
Confidence 3331 223344444444444444322 1111222222222233333332 234445566778888887665544433
Q ss_pred HhcCChHHHHHhc
Q 015537 282 IEAGVFPRLAEFL 294 (405)
Q Consensus 282 ~~~~~l~~L~~lL 294 (405)
... -+..++.-+
T Consensus 714 ~~~-~v~sia~~~ 725 (745)
T KOG0301|consen 714 KNR-SVDSIAKKL 725 (745)
T ss_pred Hhc-CHHHHHHHH
Confidence 322 234444444
No 312
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.36 E-value=93 Score=32.14 Aligned_cols=155 Identities=12% Similarity=0.209 Sum_probs=79.2
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC-CChHHHHH----hh---CC----CCHHHHHHHHHHHH
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH-GAVPIFVK----LL---YS----PSDDVREQAVWALG 184 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~-g~i~~L~~----lL---~~----~~~~i~~~a~~~L~ 184 (405)
.+|.++.+|..+. ..+...|+.++-.+-.-.......+... .+.|.+.. +. +. .++-+.....+.++
T Consensus 499 ~~p~li~~L~a~s-~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~ 577 (960)
T KOG1992|consen 499 LLPRLIRFLEAES-RVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIIS 577 (960)
T ss_pred HHHHHHHhccCcc-hHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHH
Confidence 5899999999988 7899999999988765433322223322 22332222 22 22 23334433333333
Q ss_pred HhhCCChhhHHHHHhcCChHHHHHhhhCC-CchhH----HHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHH
Q 015537 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSM----LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEV 259 (405)
Q Consensus 185 nl~~~~~~~~~~i~~~~~i~~L~~~l~~~-~~~~~----~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v 259 (405)
-+=..--+....++. .+..++....++ .++.. .+..+-++...|...|.........++|.+...+..+-.+.
T Consensus 578 i~~~~i~p~~~~~l~--~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~Ef 655 (960)
T KOG1992|consen 578 ILQSAIIPHAPELLR--QLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEF 655 (960)
T ss_pred hCHHhhhhhhhHHHH--HHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221110001111110 111222222233 34443 34444455555555555555555677777777776665777
Q ss_pred HHHHHHHHHHhccCC
Q 015537 260 LTDACWALSYLSDGT 274 (405)
Q Consensus 260 ~~~a~~~l~~l~~~~ 274 (405)
.-+++..++-+...+
T Consensus 656 iPYvfQlla~lve~~ 670 (960)
T KOG1992|consen 656 IPYVFQLLAVLVEHS 670 (960)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777777777765443
No 313
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=76.68 E-value=4 Score=32.29 Aligned_cols=74 Identities=14% Similarity=0.064 Sum_probs=53.5
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHH---HHHHHHHHHHHHhc
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ---LQFEAAWALTNIAS 146 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~---~~~~a~~~L~ni~~ 146 (405)
+.+..+.+.|++.++.+|..|+..+-.+......+...++....++..|..++.+..... ++..++..|...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 457778888889999999999988888876432233345666778899999887654333 78888777766544
No 314
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=76.49 E-value=63 Score=29.77 Aligned_cols=159 Identities=13% Similarity=0.125 Sum_probs=109.6
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHhcc-CChhHHHHHHhc-CC-hHHHHHhcCCC-----C--------cchHHHHHH
Q 015537 244 ALPALAHLIHSNDDEVLTDACWALSYLSD-GTNDKIQAVIEA-GV-FPRLAEFLMHP-----S--------PSVLIPALR 307 (405)
Q Consensus 244 ~l~~L~~ll~~~d~~v~~~a~~~l~~l~~-~~~~~~~~~~~~-~~-l~~L~~lL~~~-----~--------~~v~~~a~~ 307 (405)
-++.+...|....+.+...++..+..++. ........+... ++ .+.+..++... + +++|...++
T Consensus 57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 36778888888888889999999999988 555566666554 22 34455555321 1 278888777
Q ss_pred HHhHhhc-CChhhHHHHH-hcCchHHHHHhhcCCCchhHHHHHHHHHHH-HhcC---CHHHHHHHHHhCcHHHHHHHHhc
Q 015537 308 TVGNIVT-GDDMQTQCVI-EYQALPCLLNLLSGNYKKSIKKEACWTVSN-ITAG---NREQIQVIMHVHAFSIIVAFFFM 381 (405)
Q Consensus 308 ~l~nl~~-~~~~~~~~~~-~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n-l~~~---~~~~~~~l~~~~~i~~L~~lL~~ 381 (405)
.+-.+.. ++......++ +.+.+..+.+-|..+ ++.+.....-+|.. +... .....-.+.+...+..|..+...
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 7655554 5555555555 456888888888887 78887777777774 4332 35555667788888999997765
Q ss_pred ccccchhhhHHHHHHHHHhhhcc
Q 015537 382 FLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 382 ~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
... .....++..|.-.|...||
T Consensus 216 ~~~-~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 216 DGE-DEKSSVADLVHEFLLALCT 237 (330)
T ss_pred cCC-cccchHHHHHHHHHHHHhc
Confidence 544 2234689999999988886
No 315
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=75.90 E-value=31 Score=32.04 Aligned_cols=102 Identities=15% Similarity=0.228 Sum_probs=58.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC------CHHHHHHHHHHHHHHhcCC
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNIASGT 148 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~------~~~~~~~a~~~L~ni~~~~ 148 (405)
+..+.+.+.+++...+..|+..|+. ++-++ .++|.|+.++...- +-......+..+..+..+.
T Consensus 180 f~~It~a~~~~~~~~r~~aL~sL~t------D~gl~-----~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~ 248 (343)
T cd08050 180 FEEITEALVGSNEEKRREALQSLRT------DPGLQ-----QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNP 248 (343)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhcc------CCCch-----hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCC
Confidence 3444445555555555555555432 22222 24888888886531 1344555566666666664
Q ss_pred chhHHHHHhCCChHHHHHhhCC----------CCHHHHHHHHHHHHHhhC
Q 015537 149 SEHTKVVIDHGAVPIFVKLLYS----------PSDDVREQAVWALGNIAG 188 (405)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~----------~~~~i~~~a~~~L~nl~~ 188 (405)
.-.....+. -++|.++.++-+ ++..+|+.|+..++.++.
T Consensus 249 ~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 249 NLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred CCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 333333333 377888876632 235789999999998883
No 316
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=75.61 E-value=46 Score=32.75 Aligned_cols=152 Identities=18% Similarity=0.108 Sum_probs=87.3
Q ss_pred hcCcHHHHHHHhc--C--------CCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHH
Q 015537 114 RSGVVPRFVEFLL--R--------EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVW 181 (405)
Q Consensus 114 ~~g~l~~Li~lL~--~--------~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~i~~~a~~ 181 (405)
+..++..|..+.. . +-++.+|...+..|..-... .-.-..++..+...|.++ +..++..++.
T Consensus 270 d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A------a~~~~~~~~i~~~~l~~~~~~~klk~~~l~ 343 (501)
T PF13001_consen 270 DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA------ATSFPNILQIVFDGLYSDNTNSKLKSLALQ 343 (501)
T ss_pred CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH------HhCCccHHHHHhccccCCccccccchhcch
Confidence 3456777777766 2 11367787777766653111 001113344444445555 6677777777
Q ss_pred HH---HHhhCCChhhHHH----HHhcCChHHHHHhh----hCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHh
Q 015537 182 AL---GNIAGDSPRCRDL----VLSQGGLVPLLAQL----NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250 (405)
Q Consensus 182 ~L---~nl~~~~~~~~~~----i~~~~~i~~L~~~l----~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ 250 (405)
.+ .....+.+...-. .+..++.+.+ ..- ....+...+..+-.+|..|+...|..... ...++..|..
T Consensus 344 F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~-d~~li~~LF~ 421 (501)
T PF13001_consen 344 FIRGSSWIFKHISPQILKLLRPVILSQGWPLI-QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSK-DLSLIEFLFD 421 (501)
T ss_pred hhhcchHHhhhcCHHHHHHHHHHHHhcCcccc-ccccccCCCcccHHHHHHHHHHHHHHHccCcccccc-cHHHHHHHHH
Confidence 77 5555443221111 1222333322 100 12347888999999999999987544211 2456666666
Q ss_pred hhcCCChHHHHHHHHHHHHhccC
Q 015537 251 LIHSNDDEVLTDACWALSYLSDG 273 (405)
Q Consensus 251 ll~~~d~~v~~~a~~~l~~l~~~ 273 (405)
-|..++++++...-.||+.++..
T Consensus 422 sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 422 SLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HhhCcchHHHHHHHHHHHHHHHH
Confidence 66778899998888888888643
No 317
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=75.52 E-value=11 Score=31.97 Aligned_cols=134 Identities=13% Similarity=0.108 Sum_probs=80.5
Q ss_pred CCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCC-ChHHHHHHH-HHHHHhccCChhHHHHHHhcCChHH
Q 015537 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDAC-WALSYLSDGTNDKIQAVIEAGVFPR 289 (405)
Q Consensus 212 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~-~~l~~l~~~~~~~~~~~~~~~~l~~ 289 (405)
.+...+.+..++..+...... .....++.+...+..- +..+....| ..++.+.... ....+.
T Consensus 61 ~~~~~E~~~la~~il~~~~~~-------~~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~---------~~~~~~ 124 (213)
T PF08713_consen 61 ESGYREERYLALLILDKRRKK-------LTEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH---------PEALEL 124 (213)
T ss_dssp CSSCHHHHHHHHHHHHHCGGG---------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH---------GGHHHH
T ss_pred CCchHHHHHHHHHHhHHHhhh-------hhHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh---------HHHHHH
Confidence 555566666665555433211 0112455666666554 344444443 3344432211 234577
Q ss_pred HHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 015537 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV 369 (405)
Q Consensus 290 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 369 (405)
+...+.++++-++..++.++.......+ .. .++..+...+.++ +..|++.+.|+|..++..+++.....+..
T Consensus 125 ~~~W~~s~~~w~rR~~~v~~~~~~~~~~--~~-----~~l~~~~~~~~d~-~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 125 LEKWAKSDNEWVRRAAIVMLLRYIRKED--FD-----ELLEIIEALLKDE-EYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHHCSSHHHHHHHHHCTTTHGGGCH--HH-----HHHHHHHHCTTGS--HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHhcC--HH-----HHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 8888889998888888766655544311 11 2355566667777 89999999999999999999988877755
No 318
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=75.40 E-value=35 Score=26.22 Aligned_cols=93 Identities=11% Similarity=-0.005 Sum_probs=56.2
Q ss_pred HHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-hCcHHHHHHHHhc
Q 015537 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMH-VHAFSIIVAFFFM 381 (405)
Q Consensus 304 ~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~i~~L~~lL~~ 381 (405)
..+.-|.+++..+..... .+++.|.+-|++. ++.|+..+..+|-.++. |++.....+.. ..+|..+.+.=..
T Consensus 20 y~~~Eia~~t~~s~~~~~-----ei~d~L~kRL~~~-~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~ 93 (122)
T cd03572 20 YLYEEIAKLTRKSVGSCQ-----ELLEYLLKRLKRS-SPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGP 93 (122)
T ss_pred HHHHHHHHHHHcCHHHHH-----HHHHHHHHHhcCC-CCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCC
Confidence 344455666655543333 3567789999988 89999999999999997 56565555543 3333333332211
Q ss_pred ccc---cchhhhHHHHHHHHHhhh
Q 015537 382 FLH---FFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 382 ~~~---~~~~~~vr~~A~~al~n~ 402 (405)
.+. ..-+-.||.+|.-++.-.
T Consensus 94 ~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 94 PDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred CCcccCcchhHHHHHHHHHHHHHH
Confidence 110 112346888887776544
No 319
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=74.99 E-value=52 Score=29.83 Aligned_cols=127 Identities=18% Similarity=0.176 Sum_probs=87.5
Q ss_pred HHHHhCCChHHHHHhhCC-----------------------CCHHHHHHHHHHHHHhhCCChhhHHH-------------
Q 015537 153 KVVIDHGAVPIFVKLLYS-----------------------PSDDVREQAVWALGNIAGDSPRCRDL------------- 196 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~-----------------------~~~~i~~~a~~~L~nl~~~~~~~~~~------------- 196 (405)
..+.+.|+||.|-.+++. ++..++.+-+..+.++|.........
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 456777888888888753 11247888999999998633211100
Q ss_pred --------HHhcCChHHHHHhhhCCC-chhHHHHHHHHHHHhhcCCCC-CCh--hhhhccHHHHHhhhcCC---ChHHHH
Q 015537 197 --------VLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSNFCRGKPQ-PPF--DQVSPALPALAHLIHSN---DDEVLT 261 (405)
Q Consensus 197 --------i~~~~~i~~L~~~l~~~~-~~~~~~~a~~~l~~l~~~~~~-~~~--~~~~~~l~~L~~ll~~~---d~~v~~ 261 (405)
--+.|.+..++..+.+.+ +...+-..+.|+-.+.++.+. ... ....|+++.++..+-++ +.++..
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 113466777777775443 677788999999999999744 222 23388999888776544 356888
Q ss_pred HHHHHHHHhccCChhHHH
Q 015537 262 DACWALSYLSDGTNDKIQ 279 (405)
Q Consensus 262 ~a~~~l~~l~~~~~~~~~ 279 (405)
...-.|+.|...+.....
T Consensus 163 ~~FDLLGELiK~n~~~f~ 180 (303)
T PF12463_consen 163 SNFDLLGELIKFNRDAFQ 180 (303)
T ss_pred HHHHHHHHHHCCCHHHHH
Confidence 899999999988866544
No 320
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=74.99 E-value=76 Score=31.07 Aligned_cols=144 Identities=16% Similarity=0.144 Sum_probs=88.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhcC
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------YPQLQFEAAWALTNIASG 147 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-------~~~~~~~a~~~L~ni~~~ 147 (405)
+..+.+.+-++|+..+.+|+..|+. ++-++. .+|.|+.++..+- +-.+.......+..+..+
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~T------DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N 277 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLET------DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN 277 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhcc------CccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC
Confidence 5666777777888888888877753 233333 3888888886532 244555666666666665
Q ss_pred CchhHHHHHhCCChHHHHHhhCC----------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCC-Cch
Q 015537 148 TSEHTKVVIDHGAVPIFVKLLYS----------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKL 216 (405)
Q Consensus 148 ~~~~~~~~~~~g~i~~L~~lL~~----------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~-~~~ 216 (405)
..-+....+ .-.+|.++.++-+ ....++..|+..+..++.+-....+. +...++..+.+.+.+. ...
T Consensus 278 p~i~lepYl-h~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~ 355 (576)
T KOG2549|consen 278 PNIFLEPYL-HQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPL 355 (576)
T ss_pred CccchhhHH-HHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCc
Confidence 322222222 2467777776643 34568999999999998664433333 3445666777776444 355
Q ss_pred hHHHHHHHHHHHhhc
Q 015537 217 SMLRNATWTLSNFCR 231 (405)
Q Consensus 217 ~~~~~a~~~l~~l~~ 231 (405)
....=++..|..|..
T Consensus 356 st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 356 STHYGAIAGLSELGH 370 (576)
T ss_pred hhhhhHHHHHHHhhh
Confidence 666666666665544
No 321
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=74.63 E-value=29 Score=31.20 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=61.2
Q ss_pred ChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCCh--hhhhccH----HHHHhhhc--------CCChHHHHHHHHHH
Q 015537 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF--DQVSPAL----PALAHLIH--------SNDDEVLTDACWAL 267 (405)
Q Consensus 202 ~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~l----~~L~~ll~--------~~d~~v~~~a~~~l 267 (405)
++++++.++ ++.++.++...+.++..+....+.... ..-.|.. +.+..++. .+...+...+.-++
T Consensus 120 iiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 578999999 777999999999999999987654441 1112222 23333443 22355666666677
Q ss_pred HHhccC-----Ch---hHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhh
Q 015537 268 SYLSDG-----TN---DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (405)
Q Consensus 268 ~~l~~~-----~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 313 (405)
..|+.. +. .....++..|++..+...-+.+.+.++...+..+..++
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i 252 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPII 252 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHH
Confidence 666321 11 12222333333333222222234556666666655555
No 322
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=74.58 E-value=32 Score=33.84 Aligned_cols=173 Identities=12% Similarity=0.089 Sum_probs=101.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh--C--------CCchhHHHHHHHHHHHhhcCCCCCChh
Q 015537 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--G--------QPKLSMLRNATWTLSNFCRGKPQPPFD 239 (405)
Q Consensus 170 ~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~--~--------~~~~~~~~~a~~~l~~l~~~~~~~~~~ 239 (405)
+++.+|...|-..|-.+..+-+ +...+..|..+.. . ..++.++..+ |..||+.. ....
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kI---L~~L~kS~--~Aa~ 315 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKI---LSLLSKSV--IAAT 315 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHH---HHHHHHhH--HHHh
Confidence 3567788888888877765421 2234556666664 1 1234444444 44444431 0111
Q ss_pred hhhccHHHHHhhhcCC--ChHHHHHHHHHH---HHhccCChh-HH---HHHHhcCChHHHHH----hcCCCCcchHHHHH
Q 015537 240 QVSPALPALAHLIHSN--DDEVLTDACWAL---SYLSDGTND-KI---QAVIEAGVFPRLAE----FLMHPSPSVLIPAL 306 (405)
Q Consensus 240 ~~~~~l~~L~~ll~~~--d~~v~~~a~~~l---~~l~~~~~~-~~---~~~~~~~~l~~L~~----lL~~~~~~v~~~a~ 306 (405)
....++..+...+.++ +..++..++..+ .....+... .. ..++..++.+.+-. -....+...+..+.
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 1234555566666665 566766666666 444433322 22 22333344444410 01234567899999
Q ss_pred HHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 307 ~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
.+||.++...+.... -+.+++..|..-|..+ .++++..+--+|+.++.
T Consensus 396 e~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~-~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 396 ETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDE-SPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHccCccccc--ccHHHHHHHHHHhhCc-chHHHHHHHHHHHHHHH
Confidence 999999988775421 2456888889989777 89999999999999875
No 323
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=74.35 E-value=6.1 Score=28.20 Aligned_cols=70 Identities=10% Similarity=0.081 Sum_probs=45.4
Q ss_pred HhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHH
Q 015537 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL 267 (405)
Q Consensus 198 ~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l 267 (405)
.+...+.|+..++....+.+++...+.++.++.......-..-...++..+.....+++.++...|..++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3445678899988777899999999999999988753222222233333344444455666666666554
No 324
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.18 E-value=6 Score=36.01 Aligned_cols=64 Identities=8% Similarity=0.052 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCCchhHHHHHhCCChHHHHHh--hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 015537 136 EAAWALTNIASGTSEHTKVVIDHGAVPIFVKL--LYSPSDDVREQAVWALGNIAGDSPRCRDLVLS 199 (405)
Q Consensus 136 ~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~l--L~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~ 199 (405)
+..+.+++++...++.++.+.+.|+++.++.- +.+.+|-+++-.+.|+.++..++.+.++.+..
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 35678999999999999999999999987763 34578999999999999999998888776653
No 325
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=73.13 E-value=56 Score=27.62 Aligned_cols=141 Identities=15% Similarity=0.113 Sum_probs=88.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCChhhHHH
Q 015537 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQA-VWALGNIAGDSPRCRDL 196 (405)
Q Consensus 119 ~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a-~~~L~nl~~~~~~~~~~ 196 (405)
..+..++.++. .+.+..|+.++......... ..++.+-..+.. ++..+.... ..+++.+....
T Consensus 54 ~l~~~L~~~~~-~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 54 ELADELWESGY-REERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHCSSC-HHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred HHHHHHcCCch-HHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 34455666666 78888888888664322111 134555566655 566777666 44555553211
Q ss_pred HHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChh
Q 015537 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (405)
Q Consensus 197 i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (405)
....+.+..-+ .++++-+++.++-++...... .....++..+..++.+++..|+....|+|..++..+++
T Consensus 119 ---~~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 119 ---PEALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp ---GGHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred ---HHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 11233334444 788888888887776655544 23346667777788888999999999999999998887
Q ss_pred HHHHHHhc
Q 015537 277 KIQAVIEA 284 (405)
Q Consensus 277 ~~~~~~~~ 284 (405)
.....++.
T Consensus 189 ~v~~~l~~ 196 (213)
T PF08713_consen 189 EVLEFLQK 196 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655554
No 326
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.95 E-value=1.1e+02 Score=34.12 Aligned_cols=205 Identities=16% Similarity=0.131 Sum_probs=118.7
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh---CCCchhHHHHHHH--
Q 015537 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATW-- 224 (405)
Q Consensus 150 ~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~---~~~~~~~~~~a~~-- 224 (405)
+.+..+++.|....+..-+++.++.++..+.|++.-.-.+-...-....+.-.+..++.+.. ..+++.+.....-
T Consensus 1430 ~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~ 1509 (1758)
T KOG1791|consen 1430 EIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFI 1509 (1758)
T ss_pred hcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHH
Confidence 34446788899999999999999999999988887765444331122222222333444432 2233333322222
Q ss_pred -HHHHhhcCCCCCChhh-----------hhccHHHHHhhhcCCChHHHHHHHH---HHHHhccCChhHHHHHHhcCChHH
Q 015537 225 -TLSNFCRGKPQPPFDQ-----------VSPALPALAHLIHSNDDEVLTDACW---ALSYLSDGTNDKIQAVIEAGVFPR 289 (405)
Q Consensus 225 -~l~~l~~~~~~~~~~~-----------~~~~l~~L~~ll~~~d~~v~~~a~~---~l~~l~~~~~~~~~~~~~~~~l~~ 289 (405)
-...++..+....... .-..+|.+-.++.+..++-...--| .+..... +....+.....++...
T Consensus 1510 A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glk-s~~D~ql~~~~~~~~~ 1588 (1758)
T KOG1791|consen 1510 AFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLK-SCPDYQLLQIRNIFET 1588 (1758)
T ss_pred HHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhc-CchhhhHHhhcCcceE
Confidence 2233333321111111 1234455555665554443333344 3433333 3334566777888888
Q ss_pred HHHhcCCC--CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC-chhHHHH-HHHHHHHH
Q 015537 290 LAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKE-ACWTVSNI 355 (405)
Q Consensus 290 L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~-a~~~L~nl 355 (405)
++...+++ +..-+...+.+|++-+.-.....+.+-..|+...+..++.++. ++..+++ ..-++.++
T Consensus 1589 ~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l 1658 (1758)
T KOG1791|consen 1589 LLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVL 1658 (1758)
T ss_pred eehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHH
Confidence 88888764 3444556778888877766677777778999999999999874 4444554 34444444
No 327
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=72.64 E-value=30 Score=27.60 Aligned_cols=122 Identities=13% Similarity=0.087 Sum_probs=82.3
Q ss_pred chhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCC--ChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHH
Q 015537 149 SEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGD--SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (405)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~--~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~ 225 (405)
++.-+.+.+..++..++++++. ....++.+.+.+++-+... ++..-..+...+.+..++..-..-.++++...-...
T Consensus 16 ~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIsf 95 (149)
T PF09758_consen 16 PSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYISF 95 (149)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHHH
Confidence 4566778888899999999987 5677888888888877633 222223445666777777665456688899888888
Q ss_pred HHHhhcCCCCCChhh-------hhccHHHHHhhhcCCChHHHHHHHHHHHHh
Q 015537 226 LSNFCRGKPQPPFDQ-------VSPALPALAHLIHSNDDEVLTDACWALSYL 270 (405)
Q Consensus 226 l~~l~~~~~~~~~~~-------~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l 270 (405)
|-.++-.-....... .-++...-++++.++|+.++.++-..+.++
T Consensus 96 LK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 96 LKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 888886543222211 123444556777889988888776665554
No 328
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=72.39 E-value=1.2e+02 Score=31.12 Aligned_cols=106 Identities=13% Similarity=0.045 Sum_probs=74.5
Q ss_pred hccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHH
Q 015537 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (405)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 321 (405)
..++..|..+.+..=+.+...++.++..|..+.++.-. .++..+|.-|.+++..+...|-..|-+|.+..+.-..
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~ 377 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKI 377 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCccee
Confidence 45666666666666689999999999999888877655 3457889999999999999999999998877664433
Q ss_pred HHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhc
Q 015537 322 CVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITA 357 (405)
Q Consensus 322 ~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~ 357 (405)
.++ .-+.+++-.+ -+.+.+-.|..+|+.+.-
T Consensus 378 Vvi-----~EIer~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 378 VVI-----DEIERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred ehH-----HHHHHHHcccCccccceeehhhhhhhhHh
Confidence 332 3344444333 134455667777777654
No 329
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=72.27 E-value=44 Score=27.18 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhhccC-----CCC---chHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH-hC
Q 015537 88 GVQYECTTQFRKLLSIE-----RSP---PIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI-DH 158 (405)
Q Consensus 88 ~~~~~a~~~l~~l~s~~-----~~~---~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~-~~ 158 (405)
..+..++..+..++... +.+ ....++...+.+.+++.+.+++ +.+-..++.++..+... .+..+. +.
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~---~~~~Lk~el 112 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSR---FRSHLKLEL 112 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 44455555555554332 122 4455667788899999988877 88889999999998754 222222 22
Q ss_pred C-ChHHHHH-hhCCCC--HHHHHHHHHHHHHhhCCChhhHHHHHh
Q 015537 159 G-AVPIFVK-LLYSPS--DDVREQAVWALGNIAGDSPRCRDLVLS 199 (405)
Q Consensus 159 g-~i~~L~~-lL~~~~--~~i~~~a~~~L~nl~~~~~~~~~~i~~ 199 (405)
+ .++.++. ++.+++ ..-++.++.++..++.+.....+....
T Consensus 113 e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~N 157 (168)
T PF12783_consen 113 EVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVN 157 (168)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 2 2344444 666543 467888999999999877655555443
No 330
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=72.14 E-value=19 Score=28.34 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHhhcCC-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC---------hhHHH----HHH
Q 015537 217 SMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT---------NDKIQ----AVI 282 (405)
Q Consensus 217 ~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~---------~~~~~----~~~ 282 (405)
-++...+.+++.++... |.. ....++.++.++.+ ++......+..|..+.+.- ..... .+.
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~----Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQ----WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT----STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhh----CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 35566777777777654 322 23466666666665 3444444554444443210 11111 111
Q ss_pred hc--CChHHHHHhcCCCC----cchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 015537 283 EA--GVFPRLAEFLMHPS----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (405)
Q Consensus 283 ~~--~~l~~L~~lL~~~~----~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L 352 (405)
+. .+++.+...+.... ..+...++.+++..+..- ....+.+.++++.+..++.++ .++..|+-+|
T Consensus 78 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~--~~~~i~~~~~l~~~~~~l~~~---~~~~~A~~cl 148 (148)
T PF08389_consen 78 SNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWI--PIELIINSNLLNLIFQLLQSP---ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC--CHHHhccHHHHHHHHHHcCCH---HHHHHHHHhC
Confidence 11 33444444453322 678889999999988733 345567788999999999655 5577776654
No 331
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=71.94 E-value=71 Score=32.03 Aligned_cols=143 Identities=10% Similarity=-0.001 Sum_probs=74.1
Q ss_pred CChHHHHHHHHHHHHhccCChhHH---HHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhc--Cch
Q 015537 255 NDDEVLTDACWALSYLSDGTNDKI---QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY--QAL 329 (405)
Q Consensus 255 ~d~~v~~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--g~l 329 (405)
-..+.+-.|+-+|..+..+....- .......++..++..+. .++..+..++|+|.|+..+ +...+.+... -++
T Consensus 556 wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~~i~ 633 (745)
T KOG0301|consen 556 WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLESIL 633 (745)
T ss_pred CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHHHHh
Confidence 345566667777766665433221 11122245566666666 5667788899999999876 4344433322 122
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 330 PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 330 ~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
..+...-..+ +..++...+-...|.+. -.++.-.+.+..+.+...+.....+..+.+..=.+.-||+|+|
T Consensus 634 ~~~~~~~s~~-~knl~ia~atlaln~sv---~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~ 703 (745)
T KOG0301|consen 634 DPVIEASSLS-NKNLQIALATLALNYSV---LLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM 703 (745)
T ss_pred hhhhhhhccc-chhHHHHHHHHHHHHHH---HHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence 2222222223 55666665555555542 1112222356666666666555444322222223455777776
No 332
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=70.82 E-value=8.9 Score=20.78 Aligned_cols=21 Identities=19% Similarity=0.577 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHH
Q 015537 343 SIKKEACWTVSNITAGNREQIQV 365 (405)
Q Consensus 343 ~v~~~a~~~L~nl~~~~~~~~~~ 365 (405)
.+|.+|+++|+++ ++++.+..
T Consensus 2 ~vR~~aa~aLg~~--~~~~a~~~ 22 (30)
T smart00567 2 LVRHEAAFALGQL--GDEEAVPA 22 (30)
T ss_pred HHHHHHHHHHHHc--CCHhHHHH
Confidence 5899999999999 44554433
No 333
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=70.58 E-value=19 Score=28.29 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHhcCC-chhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHh
Q 015537 131 PQLQFEAAWALTNIASGT-SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209 (405)
Q Consensus 131 ~~~~~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~ 209 (405)
+-++...+.++..++..+ |+. -...++.++.++.+ ++.-....+.+|..+..+-..++.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~-----Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~-------------- 61 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQ-----WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRR-------------- 61 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT-----STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHC--------------
T ss_pred hhHHHHHHHHHHHHHHHHChhh-----CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhc--------------
Confidence 345666777777776642 111 12466777777776 455555666666666532111000
Q ss_pred hhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCC----ChHHHHHHHHHHHHhccCChhHHHHHHhcC
Q 015537 210 LNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN----DDEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (405)
Q Consensus 210 l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 285 (405)
......-+...-..+..- ...+++.+...+... +.++...++.++......-+ ...+.+.+
T Consensus 62 --~~~~~~r~~~l~~~l~~~-----------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~ 126 (148)
T PF08389_consen 62 --SSLSQERRRELKDALRSN-----------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSN 126 (148)
T ss_dssp --CHSHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSS
T ss_pred --hhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHH
Confidence 000111111111111111 123344444444332 26778888888888765332 34566777
Q ss_pred ChHHHHHhcCCCCcchHHHHHHHH
Q 015537 286 VFPRLAEFLMHPSPSVLIPALRTV 309 (405)
Q Consensus 286 ~l~~L~~lL~~~~~~v~~~a~~~l 309 (405)
+++.+..+|. ++..+..|+.+|
T Consensus 127 ~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 127 LLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHcC--CHHHHHHHHHhC
Confidence 8888888884 444577777664
No 334
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=69.84 E-value=7.3 Score=20.71 Aligned_cols=13 Identities=15% Similarity=0.417 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHh
Q 015537 344 IKKEACWTVSNIT 356 (405)
Q Consensus 344 v~~~a~~~L~nl~ 356 (405)
||..|+|+|+++.
T Consensus 1 VR~~Aa~aLg~ig 13 (27)
T PF03130_consen 1 VRRAAARALGQIG 13 (27)
T ss_dssp HHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHcC
Confidence 6889999999994
No 335
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.23 E-value=90 Score=29.25 Aligned_cols=133 Identities=11% Similarity=0.096 Sum_probs=88.1
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHH
Q 015537 244 ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCV 323 (405)
Q Consensus 244 ~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 323 (405)
.+.-|+..+++.+..++.+|+..|-.+....++... .--..+++.+..+..+.+..+|......+-.+...........
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 445567778899999999999999887766554433 2223567778888888888999988888877654332222222
Q ss_pred HhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHh
Q 015537 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIVAFFF 380 (405)
Q Consensus 324 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~lL~ 380 (405)
.-.=+.+++...+.+. .+.++..+...|+-+... .+........ +++...+++.
T Consensus 138 ~~~l~~~yi~~AMThi-t~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i~ 192 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHI-TPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVIS 192 (393)
T ss_pred hHHHHHHHHHHHHhhc-cHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHHH
Confidence 2223566777777777 899999999999888763 3443333333 4444444443
No 336
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=69.03 E-value=1.1e+02 Score=31.27 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=50.8
Q ss_pred CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 015537 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (405)
Q Consensus 298 ~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 358 (405)
.+..|..++..||.++...+...-.+.+..+++.|+++|....+..+...|..+|.-|.=.
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 3456889999999999998888888999999999999999876777777777777777543
No 337
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=67.25 E-value=34 Score=27.24 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=31.2
Q ss_pred hHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 301 v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
-...|+..||.+.-|-. +..|+.+|.+. +..+...|+-+|++-.-
T Consensus 79 s~~~Av~LLGtM~GGYN-----------V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 79 SPAEAVELLGTMLGGYN-----------VQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp -HHHHHHHHTTS-SSTT-----------HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred CHHHHHHHHhhccCCCc-----------HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 35678888888875443 67789999888 88999999999998764
No 338
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=67.02 E-value=10 Score=28.30 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=33.9
Q ss_pred HHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHH
Q 015537 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304 (405)
Q Consensus 261 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~ 304 (405)
...+..+..|+.. ++....+++.|+++.|+.+|.|.+.++...
T Consensus 64 d~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 64 DEEIKKLSVLATA-PELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 4456677777754 467888999999999999999998877543
No 339
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=66.95 E-value=6.7 Score=29.18 Aligned_cols=43 Identities=26% Similarity=0.299 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHH
Q 015537 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177 (405)
Q Consensus 134 ~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~ 177 (405)
....+..+..++.. |+.-..+++.|+++.|+.+|.++|.+|.-
T Consensus 63 Ld~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLATA-PELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 34556677777776 77778889999999999999998887653
No 340
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=66.58 E-value=95 Score=27.62 Aligned_cols=189 Identities=16% Similarity=0.185 Sum_probs=96.0
Q ss_pred hhcCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch
Q 015537 71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (405)
Q Consensus 71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~ 150 (405)
.++.+..+...|+.+|+... .+..++... .+++...+|.|+..=. + +.+-..++..|.+++-- -
T Consensus 11 cl~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~P--~ 74 (266)
T PF04821_consen 11 CLECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTWP--I 74 (266)
T ss_pred HHHHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCCC--H
Confidence 45678888999988777665 333333322 2444556666655433 3 78899999999998762 1
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh----------CCCchhHHH
Q 015537 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----------GQPKLSMLR 220 (405)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~----------~~~~~~~~~ 220 (405)
..- .+-.| .+..-+.........+. .++..+...+++..++..+. ...+..+.+
T Consensus 75 ~~~----~~~~~--------~~~~~~~~~~~l~~~l~----~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~ 138 (266)
T PF04821_consen 75 ELL----VESQP--------KDKNQRRNIPELLKYLQ----SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIE 138 (266)
T ss_pred HHh----ccCCC--------CChHHHHHHHHHHHHHH----HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHH
Confidence 110 01010 01111111111112221 24444555555555554441 122456677
Q ss_pred HHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC-Cc
Q 015537 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SP 299 (405)
Q Consensus 221 ~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~ 299 (405)
.++..+.|+..-++........+ .+...+... +..+.+.|++..|+.+.++. ..
T Consensus 139 lvL~LiRNlL~Ip~~~~~~~~~~-----------~~~~~~d~l--------------i~~l~~~~v~~lLL~l~s~~~~~ 193 (266)
T PF04821_consen 139 LVLTLIRNLLAIPDPPSASKRSD-----------EDSSLHDQL--------------IWALFESGVLDLLLTLASSPQES 193 (266)
T ss_pred HHHHHHHHHhcCCCCcccccccc-----------hhHHHHHHH--------------HHHHHHcCHHHHHHHHHhCcccc
Confidence 77777777776532211111000 222233333 33455567888888888765 23
Q ss_pred chHHHHHHHHhHhhcCC
Q 015537 300 SVLIPALRTVGNIVTGD 316 (405)
Q Consensus 300 ~v~~~a~~~l~nl~~~~ 316 (405)
......+.++..+..+.
T Consensus 194 ~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 194 DFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred chhhHHHHHHHHHHcCC
Confidence 33345555665555443
No 341
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.55 E-value=2.2e+02 Score=31.74 Aligned_cols=254 Identities=13% Similarity=0.158 Sum_probs=130.4
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHH----HHHHhcCCCCHHHHHHHHHHHHHHhcCCc
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR----FVEFLLREDYPQLQFEAAWALTNIASGTS 149 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~----Li~lL~~~~~~~~~~~a~~~L~ni~~~~~ 149 (405)
.+..+++.|...|+.+...|+..+..+....+ ... ..|++|. +.++..+.+ ..+|...-.++..+...-.
T Consensus 42 el~~I~kkL~KkD~~TK~KaL~eL~eli~~~~---~e~--~~~il~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lk 115 (1312)
T KOG0803|consen 42 ELDIIVKKLLKRDETTKIKALQELSELIDTSD---TEE--LKGILPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLK 115 (1312)
T ss_pred HHHHHHHHHhccChHHHHHHHHhHHHhccccc---chH--HhhhHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHH
Confidence 36788888888999999999999999975431 111 1234433 345556666 8999999999998876522
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--cCChHHHHHhhhC---------------
Q 015537 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNG--------------- 212 (405)
Q Consensus 150 ~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~L~~~l~~--------------- 212 (405)
......++ ..+|.....-.+....+-..|...+........ .+..... ..+...+.+.+..
T Consensus 116 k~lsp~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek-~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~E 193 (1312)
T KOG0803|consen 116 KKLSPFLK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEK-DRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSE 193 (1312)
T ss_pred HHhhHHHH-hhhhhhhheecccchHHHHHHHHHHHhhcChhh-hHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchH
Confidence 22222222 344554444444555566666655555443211 1121111 1111222222110
Q ss_pred ---CCchhHHHHHHHHHHHhhcCC-CCCChh----hhhccH--HHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHH
Q 015537 213 ---QPKLSMLRNATWTLSNFCRGK-PQPPFD----QVSPAL--PALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 282 (405)
Q Consensus 213 ---~~~~~~~~~a~~~l~~l~~~~-~~~~~~----~~~~~l--~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 282 (405)
.....+...++-++..+.... +..... .....+ ..+..++++..+.+..+....+.++++.-.... .-.
T Consensus 194 e~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~-~~~ 272 (1312)
T KOG0803|consen 194 ELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRV-MES 272 (1312)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhc-chh
Confidence 011234455555555554322 111111 112222 346778888889999999999988886544331 111
Q ss_pred hcCCh-HHHHHhcCCCCcchHHHHHHHHhHhhc-CChhhH--HHHHhcCchHHHHHhhc
Q 015537 283 EAGVF-PRLAEFLMHPSPSVLIPALRTVGNIVT-GDDMQT--QCVIEYQALPCLLNLLS 337 (405)
Q Consensus 283 ~~~~l-~~L~~lL~~~~~~v~~~a~~~l~nl~~-~~~~~~--~~~~~~g~l~~L~~ll~ 337 (405)
+...+ +.+.....+.+ .+.......+.+... -.+... ......|++|.+..++.
T Consensus 273 ~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 273 EKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred hhhHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 12223 33333344444 333333333432221 122111 11245578888888887
No 342
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=65.03 E-value=1.3e+02 Score=28.52 Aligned_cols=134 Identities=13% Similarity=0.116 Sum_probs=76.2
Q ss_pred HHHHHhhcCCC-hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhc---CCC------CHHHHHHHHHHHHHHh
Q 015537 76 PVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL---RED------YPQLQFEAAWALTNIA 145 (405)
Q Consensus 76 ~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~---~~~------~~~~~~~a~~~L~ni~ 145 (405)
..+++.|..+. +..+...+..++-+ |.+ ....+-+.....+..|..+-. .++ +..+..+++.||+|+.
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrIL-SRd-k~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRIL-SRD-KDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHH-hcc-ccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 34455555554 45555666666655 444 222222222223444444432 111 2478999999999999
Q ss_pred cCCchhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHH-HHHhcCChHHHHHhhh
Q 015537 146 SGTSEHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRD-LVLSQGGLVPLLAQLN 211 (405)
Q Consensus 146 ~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~i~~~a~~~L~nl~~~~~~~~~-~i~~~~~i~~L~~~l~ 211 (405)
..++..++.+.+......+++.+.. ..-.+...-+..|.-+..-.+..|. .+.+.++++.+.+.+.
T Consensus 126 f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~le 197 (532)
T KOG4464|consen 126 FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLE 197 (532)
T ss_pred hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhh
Confidence 9999999999998887777776543 1112222223333333322233443 4567778888888873
No 343
>PLN03205 ATR interacting protein; Provisional
Probab=64.65 E-value=74 Score=29.82 Aligned_cols=159 Identities=12% Similarity=0.086 Sum_probs=87.2
Q ss_pred hccHHHHHhhhcCCChHHHHHHHHHHHHhccC---ChhHHHHHHhcCCh---HHHHHhc-CCCCcchHHHHHHHHhHhhc
Q 015537 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVF---PRLAEFL-MHPSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l---~~L~~lL-~~~~~~v~~~a~~~l~nl~~ 314 (405)
..++..|+.+..-++.-+...+++.|..+..+ +......-.+.+++ +.+.+.. .+....++..|+.++.-|..
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 34445555555555555555555554443321 22222222222222 2222222 35667788889988887776
Q ss_pred CChhh--HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH------------------------H
Q 015537 315 GDDMQ--TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIM------------------------H 368 (405)
Q Consensus 315 ~~~~~--~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~------------------------~ 368 (405)
.++.. ++.+....+++.+..+|....-..|+++|...|--+.. .|.....+. =
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~f 480 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAF 480 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCCccccccccccccccccccHHHH
Confidence 66533 34455556788888999877677899988755433211 111111110 0
Q ss_pred hCcHHHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537 369 VHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLV 401 (405)
Q Consensus 369 ~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n 401 (405)
..++.-|.+++....+...+..+++.|...|+-
T Consensus 481 SsIlegLAeCiac~~~s~~dIeLck~aiimLAf 513 (652)
T PLN03205 481 GKIFEGLADCLTSPRKTSEDLELCRNVIMILAL 513 (652)
T ss_pred HHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHH
Confidence 234566777777666665667788888777653
No 344
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=63.81 E-value=65 Score=29.89 Aligned_cols=97 Identities=11% Similarity=0.134 Sum_probs=61.0
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC----------CChHHHHHHHHHHHHhccCChhHHHHHHhc
Q 015537 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----------NDDEVLTDACWALSYLSDGTNDKIQAVIEA 284 (405)
Q Consensus 215 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~----------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 284 (405)
+.......+.++..|..++.-.....+..++|.++.++-. +...++..|+..++.++......... +..
T Consensus 230 nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~-l~~ 308 (343)
T cd08050 230 NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNT-LQP 308 (343)
T ss_pred cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCc-HHH
Confidence 6777888888899998886545555667788888876621 22578899999999988653322221 223
Q ss_pred CChHHHHHhcCCCC-c-chHHHHHHHHhHh
Q 015537 285 GVFPRLAEFLMHPS-P-SVLIPALRTVGNI 312 (405)
Q Consensus 285 ~~l~~L~~lL~~~~-~-~v~~~a~~~l~nl 312 (405)
.++..+.+.|.++. + ....-|+..|+.+
T Consensus 309 ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 309 RITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 34445555554333 2 3355666666655
No 345
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=63.15 E-value=1.8e+02 Score=29.52 Aligned_cols=65 Identities=12% Similarity=0.045 Sum_probs=39.0
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCC-HHHHHHHHHHHHHHhcCC
Q 015537 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDY-PQLQFEAAWALTNIASGT 148 (405)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~-~~~~~~a~~~L~ni~~~~ 148 (405)
--|-..+++++...+..|+.-|.-..++.+.+ . +...|..++.+.+. .++..-|...|+-+..++
T Consensus 455 ALLsdyv~~~~s~~ri~aIlGLglayaGsq~e---~-----V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGs 520 (878)
T KOG2005|consen 455 ALLSDYLQSSSSIHRIGAILGLGLAYAGSQRE---E-----VLELLSPIMFDTKSPMEVVAFASLSLGMIFVGS 520 (878)
T ss_pred HHHHHhccCCCceeehHHhhhhHHhhcCCchH---H-----HHHHHhHHhcCCCCchhHHHHHHhhcceeEEec
Confidence 34445666677777777776666555544222 2 12256666665542 457777888888887764
No 346
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=62.04 E-value=56 Score=31.84 Aligned_cols=92 Identities=13% Similarity=0.217 Sum_probs=59.4
Q ss_pred CChHHHHHhcCCCCcchHHHHHHHHhHhhcC---ChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC--
Q 015537 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTG---DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-- 359 (405)
Q Consensus 285 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~---~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~-- 359 (405)
++++.+++.+.. +.+..-.+++++ +.. .....+.+.+.++++.|+.+|...+++.++..|+-+|+.|..-+
T Consensus 21 ~~v~~llkHI~~--~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n 96 (475)
T PF04499_consen 21 NFVDNLLKHIDT--PAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRN 96 (475)
T ss_pred cHHHHHHHhcCC--cHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 666666666643 334444455554 211 12445556678999999999987768889999999988886521
Q ss_pred -----------HHHHHHHHHhCcHHHHHHHHh
Q 015537 360 -----------REQIQVIMHVHAFSIIVAFFF 380 (405)
Q Consensus 360 -----------~~~~~~l~~~~~i~~L~~lL~ 380 (405)
.+....+.+...+..|++.+-
T Consensus 97 ~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL 128 (475)
T PF04499_consen 97 APQNEQSSIGPNPLTRQLVSEETVEKLLDIML 128 (475)
T ss_pred cccccccCCCccHHHHHHhChHHHHHHHHHHh
Confidence 233455566666666666654
No 347
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=61.62 E-value=1.3e+02 Score=27.38 Aligned_cols=127 Identities=13% Similarity=0.181 Sum_probs=85.8
Q ss_pred HHHHHhcCChHHHHHhhhC----------------------CCchhHHHHHHHHHHHhhcCCCCC---------------
Q 015537 194 RDLVLSQGGLVPLLAQLNG----------------------QPKLSMLRNATWTLSNFCRGKPQP--------------- 236 (405)
Q Consensus 194 ~~~i~~~~~i~~L~~~l~~----------------------~~~~~~~~~a~~~l~~l~~~~~~~--------------- 236 (405)
+..+.+.|.++.|-+++.. +++..++.+.+..+.++|+..+..
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 3456677777777666521 122357888999999999843110
Q ss_pred -------ChhhhhccHHHHHhhhcCC--ChHHHHHHHHHHHHhccCChh--HHHHHHhcCChHHHHHhcCCC---CcchH
Q 015537 237 -------PFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTND--KIQAVIEAGVFPRLAEFLMHP---SPSVL 302 (405)
Q Consensus 237 -------~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~L~~lL~~~---~~~v~ 302 (405)
....-.|.+..++..+... +...+-..+.++-.+..+.+. ....+.+.|+++.++.-+-++ +..+.
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~ 161 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL 161 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence 0111256777777666543 567788888888888777655 233577889999999988544 33588
Q ss_pred HHHHHHHhHhhcCChhhH
Q 015537 303 IPALRTVGNIVTGDDMQT 320 (405)
Q Consensus 303 ~~a~~~l~nl~~~~~~~~ 320 (405)
......||.+..++....
T Consensus 162 Q~~FDLLGELiK~n~~~f 179 (303)
T PF12463_consen 162 QSNFDLLGELIKFNRDAF 179 (303)
T ss_pred HHHHHHHHHHHCCCHHHH
Confidence 889999999998886443
No 348
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=61.56 E-value=25 Score=23.92 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=46.5
Q ss_pred HHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChH
Q 015537 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288 (405)
Q Consensus 221 ~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 288 (405)
..+|+++.|--. |.........+...+..-+..-++....+++|.++.+-....+.++.+.+...+.
T Consensus 3 ~il~~fa~LNy~-P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl~ 69 (71)
T PF06743_consen 3 SILLPFARLNYQ-PPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFLQ 69 (71)
T ss_pred HHHHHHHhcCCC-CCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHHh
Confidence 345666666533 4444445566667777777777899999999999998877777777776655443
No 349
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.68 E-value=97 Score=34.08 Aligned_cols=207 Identities=16% Similarity=0.173 Sum_probs=117.2
Q ss_pred CChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh---C---CCchhHHHHHHHHHHHhh
Q 015537 159 GAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---G---QPKLSMLRNATWTLSNFC 230 (405)
Q Consensus 159 g~i~~L~~lL~--~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~---~---~~~~~~~~~a~~~l~~l~ 230 (405)
|.+.....+.. ++..+++...+.++.++.....+ .++ +| .+.+..++. . .....+.+....+|.-++
T Consensus 840 ~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge---~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIs 914 (1610)
T KOG1848|consen 840 GMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGE---HLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLIS 914 (1610)
T ss_pred HHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccch---hhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhh
Confidence 34433333333 35667788888888888754332 111 12 444444442 1 225677888888888888
Q ss_pred cCC-CCCChhhhhccHHHHHhhhcC-CChHHHHH---HHHHHHHhccC------ChhHHHHHHh-------------cCC
Q 015537 231 RGK-PQPPFDQVSPALPALAHLIHS-NDDEVLTD---ACWALSYLSDG------TNDKIQAVIE-------------AGV 286 (405)
Q Consensus 231 ~~~-~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~---a~~~l~~l~~~------~~~~~~~~~~-------------~~~ 286 (405)
.+. +..+...+.+++..+..+-.. .|-.+--. -+|.++..... ++......++ .++
T Consensus 915 sDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~l 994 (1610)
T KOG1848|consen 915 SDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVL 994 (1610)
T ss_pred hcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHH
Confidence 887 777777778888887776643 45444333 34555443322 1111000111 111
Q ss_pred ----hHHHHHhcCCCCcchHHHHHHHHhHhhcCC-hhhHHHHHhcCchHHHHHhhcCCC--------chhHH----HHHH
Q 015537 287 ----FPRLAEFLMHPSPSVLIPALRTVGNIVTGD-DMQTQCVIEYQALPCLLNLLSGNY--------KKSIK----KEAC 349 (405)
Q Consensus 287 ----l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~g~l~~L~~ll~~~~--------~~~v~----~~a~ 349 (405)
+..|.++-.+.-.+|+..|+.++-.+.... ........+.-+...++.+|.+.+ ...++ +..+
T Consensus 995 wi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ 1074 (1610)
T KOG1848|consen 995 WIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSC 1074 (1610)
T ss_pred HHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhh
Confidence 112223334555688999999988887432 233334455556777888887321 22332 3478
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 015537 350 WTVSNITAGNREQIQVIMHVH 370 (405)
Q Consensus 350 ~~L~nl~~~~~~~~~~l~~~~ 370 (405)
.+|+-|+.--+++...+.+.+
T Consensus 1075 ltisgIaklf~e~fk~llnln 1095 (1610)
T KOG1848|consen 1075 LTISGIAKLFSENFKLLLNLN 1095 (1610)
T ss_pred hhHHHHHHHHHHHHHHHHhcc
Confidence 888988876777777776543
No 350
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=60.17 E-value=34 Score=28.59 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=54.2
Q ss_pred HHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015537 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIM 367 (405)
Q Consensus 288 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (405)
+.+.....+++.-++..++.++...... +.... .+++.+-.++.++ +..|++.+.|+|..++...++.+...+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 5777788888888888887777665543 11112 2455666666667 899999999999999988888776666
Q ss_pred Hh
Q 015537 368 HV 369 (405)
Q Consensus 368 ~~ 369 (405)
+.
T Consensus 181 ~~ 182 (197)
T cd06561 181 EK 182 (197)
T ss_pred HH
Confidence 43
No 351
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=59.45 E-value=86 Score=24.73 Aligned_cols=95 Identities=17% Similarity=0.130 Sum_probs=65.8
Q ss_pred cCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh-hhHHHHHhcCchHH
Q 015537 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPC 331 (405)
Q Consensus 253 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~ 331 (405)
..+|.....+.|-.+.. .+.... .++..+..-|.++++.++..|+..|-.++.+.. ..-..+...+++.-
T Consensus 15 ~~~dw~~ileicD~In~----~~~~~k-----~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~e 85 (139)
T cd03567 15 REEDWEAIQAFCEQINK----EPEGPQ-----LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNE 85 (139)
T ss_pred CCCCHHHHHHHHHHHHc----CCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHH
Confidence 34566666777766642 111111 245678888899999999999999999987553 34445667789999
Q ss_pred HHHhhcC-----CCchhHHHHHHHHHHHHh
Q 015537 332 LLNLLSG-----NYKKSIKKEACWTVSNIT 356 (405)
Q Consensus 332 L~~ll~~-----~~~~~v~~~a~~~L~nl~ 356 (405)
|++++.. ..++.|+..+.-.+-.-+
T Consensus 86 l~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 86 LIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 9999963 126788888777666654
No 352
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=58.20 E-value=56 Score=23.23 Aligned_cols=67 Identities=9% Similarity=0.077 Sum_probs=45.0
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhh----CCCCHHHHHHHHHHHH
Q 015537 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL----YSPSDDVREQAVWALG 184 (405)
Q Consensus 113 ~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL----~~~~~~i~~~a~~~L~ 184 (405)
.+..++.+|..++.+..+.++|...+.|+..+..... .-+..| =+.++..+ .+++..+...|..++-
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----~~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG----ENIKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----HHHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4566788888887665558999999999999977532 233445 33333333 4467777777776653
No 353
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=57.51 E-value=74 Score=23.36 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=50.0
Q ss_pred hcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHH
Q 015537 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351 (405)
Q Consensus 283 ~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~ 351 (405)
...++..|+.+...+.......++..+..++..+ .....+.+.|..+.|-++-... ++..+..+--+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~-~a~~~l~~iG~~~fL~klr~~~-~~~~~~~id~i 94 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSP-YAAQILRDIGAVRFLSKLRPNV-EPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCc-HHHHHHHHccHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 4467888999999988888999999999987644 4556688889888877776655 66655554433
No 354
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=56.46 E-value=75 Score=29.89 Aligned_cols=46 Identities=26% Similarity=0.136 Sum_probs=35.9
Q ss_pred chhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 015537 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (405)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 194 (405)
+...+..++...|-.|+.+..++|+.-++..-.+|.++.+.-...|
T Consensus 167 ~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r 212 (457)
T KOG2085|consen 167 PSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHR 212 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhH
Confidence 4556667788889999999999999999888888888776444333
No 355
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=56.30 E-value=1.6e+02 Score=26.95 Aligned_cols=181 Identities=9% Similarity=0.041 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh----C----CCchhHHHHHHHHHHHhhcCCCCCChhhhhccH
Q 015537 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----G----QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL 245 (405)
Q Consensus 174 ~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~----~----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l 245 (405)
.++...+..+.......+.. +. +....+++++..+. + ..++++.......+..+-..-.+........++
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf 119 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 35566666666666544432 22 33447777777432 1 135777777776666666544433444446677
Q ss_pred HHHHhhhcCC---ChHHHHHHHHHHHHhccCChhHHHHH---HhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcC----
Q 015537 246 PALAHLIHSN---DDEVLTDACWALSYLSDGTNDKIQAV---IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG---- 315 (405)
Q Consensus 246 ~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~---~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~---- 315 (405)
...+.++..+ -|+.+..-...|.++...+....-.+ .-..++..++--++|.+.++...++.++..+...
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 7777787654 38888887777777765432211100 0002345666667899999999999999888742
Q ss_pred ChhhHHHHHhcC---chHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537 316 DDMQTQCVIEYQ---ALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (405)
Q Consensus 316 ~~~~~~~~~~~g---~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (405)
+++....+...- ++..+...+.++.+...=+.-+-+|.++.
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 334444454433 33334444444434444455556666665
No 356
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=55.40 E-value=78 Score=29.17 Aligned_cols=66 Identities=26% Similarity=0.403 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhCC--ChHHHHHhhCCC---CHHHHHHHHHHHHHhhCCChhhHHHHH
Q 015537 132 QLQFEAAWALTNIASGTSEHTKVVIDHG--AVPIFVKLLYSP---SDDVREQAVWALGNIAGDSPRCRDLVL 198 (405)
Q Consensus 132 ~~~~~a~~~L~ni~~~~~~~~~~~~~~g--~i~~L~~lL~~~---~~~i~~~a~~~L~nl~~~~~~~~~~i~ 198 (405)
.+|..|+.++..+... +.....++..+ ++.-|+.+++.+ ...++..|+.+|.-|+.+...+.+.+.
T Consensus 237 ~iRllAi~~l~~~~~~-~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPE-SQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHHHHHhhCCC-HHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 4566666666555544 56666677666 899999999864 567999999999999987776655443
No 357
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=55.14 E-value=2.6e+02 Score=29.43 Aligned_cols=216 Identities=15% Similarity=0.095 Sum_probs=94.8
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCC-----Ch-hhHHHHHhcCChHHHHHhhhCCC-chhHHHHHHHHHHHhhc
Q 015537 160 AVPIFVKLLYS-PSDDVREQAVWALGNIAGD-----SP-RCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSNFCR 231 (405)
Q Consensus 160 ~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~-----~~-~~~~~i~~~~~i~~L~~~l~~~~-~~~~~~~a~~~l~~l~~ 231 (405)
.++.++.++.. .+++++..|...|.-|+.. .| .....+...+.+..|+..+...+ ........+..+..++.
T Consensus 191 li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ll~ 270 (838)
T KOG2073|consen 191 LIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGIIVLISLLN 270 (838)
T ss_pred HHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHHHHHHhcC
Confidence 67777777765 3567777777777777654 22 24444445555666655553322 22333333222222222
Q ss_pred CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCC---hHHHHHhcCCCCcchHHHHHHH
Q 015537 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV---FPRLAEFLMHPSPSVLIPALRT 308 (405)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~---l~~L~~lL~~~~~~v~~~a~~~ 308 (405)
. .............+.+-....++.+....+.++..-. .+..+.+.+... ++.-...|.-+=...|...+..
T Consensus 271 ~--~r~~~~~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rlki~el 345 (838)
T KOG2073|consen 271 P--RRDTVETNSTTTILSQPPSERDPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPPLGFERLKIVEL 345 (838)
T ss_pred c--ccccccccceeeeecCCccccCccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCCcchHHHHHHHH
Confidence 1 1111110000111111122234444444444433211 112222222211 1111222222223456667777
Q ss_pred HhHhhcCC-hhhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHHHH-HHHh----------cCCHHHHHHHHHhCcHHHH
Q 015537 309 VGNIVTGD-DMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTV-SNIT----------AGNREQIQVIMHVHAFSII 375 (405)
Q Consensus 309 l~nl~~~~-~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L-~nl~----------~~~~~~~~~l~~~~~i~~L 375 (405)
|+.+...+ ......+...++++.++.++.... +.-+...+-.+| .++. ..+......+.+.+++..+
T Consensus 346 iaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~~~~~~~~~~s~~~~~v~~~l~~c~l~~~~ 425 (838)
T KOG2073|consen 346 IAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLSDETNNDSNISADNEIVDHLLQDCQLSDNI 425 (838)
T ss_pred HHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhhccccccccCCCchHHHHHHHHHhhhhhhh
Confidence 77666544 355556667777766666665431 111333322222 2222 2333334444567777777
Q ss_pred HHHHh
Q 015537 376 VAFFF 380 (405)
Q Consensus 376 ~~lL~ 380 (405)
+...+
T Consensus 426 l~~~e 430 (838)
T KOG2073|consen 426 LNQWE 430 (838)
T ss_pred hhccc
Confidence 66554
No 358
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=54.84 E-value=55 Score=25.89 Aligned_cols=74 Identities=7% Similarity=-0.025 Sum_probs=50.7
Q ss_pred cCHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHH-HHHHhcCCC--CHHHHHHHHHHHHHHhc
Q 015537 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR-FVEFLLRED--YPQLQFEAAWALTNIAS 146 (405)
Q Consensus 73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~-Li~lL~~~~--~~~~~~~a~~~L~ni~~ 146 (405)
+.+..+.+-|++ .++.++..|+..+-.+..........++...+++.. |+.++.... ...++..++..+...+.
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 356777777764 578888888888877765442344456667788887 888886321 25778888877777654
No 359
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=54.36 E-value=81 Score=30.78 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=50.8
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-------------chhHHHHHhCCChHHHHHhhCC-CCHHH
Q 015537 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-------------SEHTKVVIDHGAVPIFVKLLYS-PSDDV 175 (405)
Q Consensus 110 ~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~-------------~~~~~~~~~~g~i~~L~~lL~~-~~~~i 175 (405)
+.+.+.++++.|+.+|....+++++..|+..|..|..-. ......+.....|..|+..+-. .....
T Consensus 56 ewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~ 135 (475)
T PF04499_consen 56 EWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSS 135 (475)
T ss_pred HHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcch
Confidence 445578999999999987666889999998887775432 2233445555566666664442 23445
Q ss_pred HHHHHHHHHHhh
Q 015537 176 REQAVWALGNIA 187 (405)
Q Consensus 176 ~~~a~~~L~nl~ 187 (405)
..+++.++..+.
T Consensus 136 lvn~v~IlieLI 147 (475)
T PF04499_consen 136 LVNGVSILIELI 147 (475)
T ss_pred HHHHHHHHHHHH
Confidence 555666666555
No 360
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.24 E-value=83 Score=29.49 Aligned_cols=133 Identities=17% Similarity=0.223 Sum_probs=89.2
Q ss_pred ChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC-hhHHHH
Q 015537 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT-NDKIQA 280 (405)
Q Consensus 202 ~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~-~~~~~~ 280 (405)
-+..|+..+ ++.+..++..+...+-.+....|.........+++.+..++.+.|..++.....++-++.... .+....
T Consensus 59 tlkeLl~ql-kHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQL-KHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhh-cCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 355677777 888999999999988888777555555556778888888888888888888888877754332 222111
Q ss_pred HHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCC-hhhHHHHHhcCchHHHHHhhcC
Q 015537 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD-DMQTQCVIEYQALPCLLNLLSG 338 (405)
Q Consensus 281 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~g~l~~L~~ll~~ 338 (405)
++ .=+++.+...+.+..+.++.-++..+.-++... +........ +++.+..++..
T Consensus 138 ~~-~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i~~ 193 (393)
T KOG2149|consen 138 MV-SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVISK 193 (393)
T ss_pred hH-HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHHHH
Confidence 11 123456666677888899999999988887544 333333332 45555555543
No 361
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=54.02 E-value=67 Score=24.12 Aligned_cols=71 Identities=8% Similarity=-0.004 Sum_probs=46.5
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhc-----CCCCHHHHHHHHHHHHHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-----REDYPQLQFEAAWALTNI 144 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~-----~~~~~~~~~~a~~~L~ni 144 (405)
.+..+.+-|.+.++.+++.|+..+..++.....+....+....++..++.+.. ......++..+...+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 45667777788899999999999998876653444455556666655554311 111367777777766554
No 362
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=53.34 E-value=21 Score=28.31 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=53.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHH--HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE--VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~--~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~ 151 (405)
....+++.|+.+........+..|.+-. .|-++. -+..+++..++.==.... .--+..|+..|+.+-.+
T Consensus 23 Qt~~lielLk~~~~~~~~~lldLL~~RV----~PGVD~AA~VKA~FL~~ia~g~~~~~-~Is~~~Av~LLGtM~GG---- 93 (154)
T PF11791_consen 23 QTAELIELLKNPPAGEEAFLLDLLTNRV----PPGVDEAAYVKAEFLAAIAKGEISSP-LISPAEAVELLGTMLGG---- 93 (154)
T ss_dssp HHHHHHHHHHS--TT-HHHHHHHHHHSS------TT-HHHHHHHHHHHHHHTTSS-BT-TB-HHHHHHHHTTS-SS----
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHhcC----CCCCChHHHHHHHHHHHHHcCCccCC-CcCHHHHHHHHhhccCC----
Confidence 4578888888765444444444444433 222222 334444443332211111 23467788888877665
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 015537 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG 188 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~ 188 (405)
--|++|+.+|.+++..+...|+.+|.+..-
T Consensus 94 -------YNV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 94 -------YNVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp -------TTHHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred -------CcHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 138899999999999999999999998653
No 363
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=53.00 E-value=3.9e+02 Score=33.04 Aligned_cols=297 Identities=8% Similarity=0.035 Sum_probs=139.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccC------CCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIE------RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~------~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~ 148 (405)
++.++..+..++......+..++..+.... ..+....-+-.++++.++++...+. ..-+...+..|.-+....
T Consensus 986 ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~-wy~k~gG~~gI~~l~~~~ 1064 (3550)
T KOG0889|consen 986 LDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDST-WYAKDGGVNGIKCLIESM 1064 (3550)
T ss_pred HHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHh-HHHHcCCCceeeeehhhc
Confidence 678888888777777777777776654322 0111111122334555555555443 233333333333333332
Q ss_pred chhHHHHHh--CCChHHHHHhhCCC---C----HHHHHHHH-HHHHHhhC--CChhhHHHHHhcCChHHHHHhhhCCCch
Q 015537 149 SEHTKVVID--HGAVPIFVKLLYSP---S----DDVREQAV-WALGNIAG--DSPRCRDLVLSQGGLVPLLAQLNGQPKL 216 (405)
Q Consensus 149 ~~~~~~~~~--~g~i~~L~~lL~~~---~----~~i~~~a~-~~L~nl~~--~~~~~~~~i~~~~~i~~L~~~l~~~~~~ 216 (405)
+ ...+.+ ..++..+...|... . .++....+ ..+..+.. ..+.-+... ..+.+.+++.-+ .+++.
T Consensus 1065 ~--~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-~~~~~~~lv~eL-~npN~ 1140 (3550)
T KOG0889|consen 1065 P--SLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKS-AMNVFSPLVLEL-FNPNS 1140 (3550)
T ss_pred h--HHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHH-cCCch
Confidence 2 111111 13444555555431 1 11211121 11111111 111111111 234667777777 77788
Q ss_pred hHHHHHHHHHHHhhcCCCCCChhhhhccHHHH-Hhh----hcCCChHHHHHHHHHHHHhccCCh-------hHHHHHHhc
Q 015537 217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPAL-AHL----IHSNDDEVLTDACWALSYLSDGTN-------DKIQAVIEA 284 (405)
Q Consensus 217 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L-~~l----l~~~d~~v~~~a~~~l~~l~~~~~-------~~~~~~~~~ 284 (405)
.|+..+...|.+++..........+.+.-+.+ ... +.+..-.++.-.+.++.+++...+ +........
T Consensus 1141 ~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~ 1220 (3550)
T KOG0889|consen 1141 DVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFL 1220 (3550)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHH
Confidence 99999999999998875322222222222222 111 122223334444444444332221 111111100
Q ss_pred CCh-----HH---HHHhcCCC----CcchHHHHHHHHhHhhcCChhhHH--HHHhcCchHHHHHhhcCCCchhHHHHHHH
Q 015537 285 GVF-----PR---LAEFLMHP----SPSVLIPALRTVGNIVTGDDMQTQ--CVIEYQALPCLLNLLSGNYKKSIKKEACW 350 (405)
Q Consensus 285 ~~l-----~~---L~~lL~~~----~~~v~~~a~~~l~nl~~~~~~~~~--~~~~~g~l~~L~~ll~~~~~~~v~~~a~~ 350 (405)
+.+ .. +....... ....+..+...++......+.... .-...+++..+.+.+... .+.+...+.-
T Consensus 1221 ~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~-~~Ei~~~~~~ 1299 (3550)
T KOG0889|consen 1221 IALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKR-SSELIEVALE 1299 (3550)
T ss_pred HHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCC-hHHHHHHHHH
Confidence 000 00 12222111 123466777777766654443221 223456788888888888 8888888888
Q ss_pred HHHHHhcCCHHHHHHHHHhCcHHHHHH
Q 015537 351 TVSNITAGNREQIQVIMHVHAFSIIVA 377 (405)
Q Consensus 351 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ 377 (405)
.+......++..-...+..+.=|.|..
T Consensus 1300 ~l~~v~~~~~~~~ke~lq~~lrplL~~ 1326 (3550)
T KOG0889|consen 1300 GLRKVLAQDVKLPKELLQSHLRPLLMN 1326 (3550)
T ss_pred HHHhhhhccccccHHHHHhhHHHHHHh
Confidence 888887764444444555555454444
No 364
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=52.98 E-value=52 Score=26.02 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=50.5
Q ss_pred CChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHH
Q 015537 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQI 363 (405)
Q Consensus 285 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~ 363 (405)
.+-..+..+|.+++.+++..|+.||...- ++.... --+.|..++++. ..|.+. ..+.. .....+
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k--~~~l~p------Y~d~L~~Lldd~---~frdeL----~~f~~~~~~~~I 81 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWK--DPYLTP------YKDNLENLLDDK---TFRDEL----TTFNLSDESSVI 81 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cHHHHh------HHHHHHHHcCcc---hHHHHH----HhhcccCCcCCC
Confidence 44567889999999999999999996642 322111 124566777655 566553 22222 222223
Q ss_pred HHHHHhCcHHHHHHHHhc
Q 015537 364 QVIMHVHAFSIIVAFFFM 381 (405)
Q Consensus 364 ~~l~~~~~i~~L~~lL~~ 381 (405)
+.--..+++|.++++|-.
T Consensus 82 ~~ehR~~l~pvvlRILyg 99 (141)
T PF07539_consen 82 EEEHRPELMPVVLRILYG 99 (141)
T ss_pred CHHHHhHHHHHHHHHHHH
Confidence 444456788888888753
No 365
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=52.19 E-value=1.1e+02 Score=24.10 Aligned_cols=74 Identities=15% Similarity=0.102 Sum_probs=53.4
Q ss_pred ChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHH-HHHhhhCC--CchhHHHHHHHHHHHhhcCC
Q 015537 160 AVPIFVKLLY-SPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVP-LLAQLNGQ--PKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 160 ~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~-L~~~l~~~--~~~~~~~~a~~~l~~l~~~~ 233 (405)
++..|..=|. +.++.++..|+..|-.+..+. ..++..+...+++.. |++++... .+..|+..++..+...+...
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 4455555555 357888888888888877554 567788888889987 89988532 34678888888888777654
No 366
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=51.95 E-value=1.3e+02 Score=28.25 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=70.6
Q ss_pred cCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh-hhHHHHHhcCchHH
Q 015537 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPC 331 (405)
Q Consensus 253 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~ 331 (405)
..++.++..++|--++.=.++.. ..+..+.+-|.+.++.|...|+..++.++.++. .....+-...|...
T Consensus 22 T~enW~~IlDvCD~v~~~~~~~k---------d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~e 92 (462)
T KOG2199|consen 22 TSENWSLILDVCDKVGSDPDGGK---------DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTE 92 (462)
T ss_pred ccccHHHHHHHHHhhcCCCcccH---------HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHH
Confidence 34567777777776654332222 345778888999999999999999999997665 34455667789999
Q ss_pred HHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 332 LLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 332 L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
|..++.+...+.|++...-++-+.+.
T Consensus 93 l~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 93 LRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 99999954488888887777776654
No 367
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=51.45 E-value=34 Score=35.44 Aligned_cols=71 Identities=21% Similarity=0.235 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHHhcCCchhHHH-----------------------------------HHhCCChHHHHHhhCC----
Q 015537 130 YPQLQFEAAWALTNIASGTSEHTKV-----------------------------------VIDHGAVPIFVKLLYS---- 170 (405)
Q Consensus 130 ~~~~~~~a~~~L~ni~~~~~~~~~~-----------------------------------~~~~g~i~~L~~lL~~---- 170 (405)
+|+++..|+.+|.|+....|+++.. +..+++|..|+.+|+-
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~ 754 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP 754 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 4899999999999988776554322 4456789999999986
Q ss_pred -CCHHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 015537 171 -PSDDVREQAVWALGNIAGDSPRCRDLVLSQG 201 (405)
Q Consensus 171 -~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~ 201 (405)
....++..|+.+|.-|+.++. +|+.+.+.-
T Consensus 755 t~aD~IRalAc~~L~GLaR~~t-VrQIltKLp 785 (1516)
T KOG1832|consen 755 TTADCIRALACRVLLGLARDDT-VRQILTKLP 785 (1516)
T ss_pred CcHHHHHHHHHHHHhccccCcH-HHHHHHhCc
Confidence 245689999999999998876 777765543
No 368
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=49.68 E-value=1.2e+02 Score=23.36 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=56.5
Q ss_pred CCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCC-hhhHHHHHhc-CchHH
Q 015537 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD-DMQTQCVIEY-QALPC 331 (405)
Q Consensus 254 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~-g~l~~ 331 (405)
.++...-.....-|+.++..+..... .+++.|..-|.+.++.|+..++++|-.++... +.....+... ..+..
T Consensus 12 dd~~p~pgy~~~Eia~~t~~s~~~~~-----ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~ 86 (122)
T cd03572 12 DDDEPTPGYLYEEIAKLTRKSVGSCQ-----ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRE 86 (122)
T ss_pred CCCCCCchHHHHHHHHHHHcCHHHHH-----HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHH
Confidence 33333344455556666666544433 34578888898889999999999999998644 3444333322 23333
Q ss_pred HHHhhcCC-------CchhHHHHHHHHHHHHh
Q 015537 332 LLNLLSGN-------YKKSIKKEACWTVSNIT 356 (405)
Q Consensus 332 L~~ll~~~-------~~~~v~~~a~~~L~nl~ 356 (405)
+..+-..+ ....||.+|--++.-|.
T Consensus 87 ~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 87 CANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 33333211 12356666665555553
No 369
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=49.18 E-value=2.4e+02 Score=26.75 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=46.6
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhh
Q 015537 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPS-DDVREQAVWALGNIA 187 (405)
Q Consensus 110 ~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~i~~~a~~~L~nl~ 187 (405)
...++..++-.|+++.++.+ |.-+...-.+|.+|-..-..+|..+. .++=..+.+++..+. -.-....+.+||.+.
T Consensus 171 K~yid~~FvlkLLdLFdSED-pRERe~LKT~LhrIygKfl~~r~fir-k~iNNif~~FIyEte~hnGIaELLEIlgSiI 247 (457)
T KOG2085|consen 171 KKYIDQKFVLKLLDLFDSED-PREREFLKTILHRIYGKFLVHRPFIR-KSINNIFLRFIYETERHNGIAELLEILGSII 247 (457)
T ss_pred HHHhhHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHhhhHHHHH-HhhcchhhhhcccccccCCHHHHHHHHHHhc
Confidence 45677788889999999988 88888888888888774344443333 244444555554421 111223455555554
No 370
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=48.43 E-value=1.7e+02 Score=27.53 Aligned_cols=136 Identities=13% Similarity=0.133 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC--CCCChhhh----hcc
Q 015537 171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--PQPPFDQV----SPA 244 (405)
Q Consensus 171 ~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~----~~~ 244 (405)
....-.+.|...+.+...+-|...+. ++..-+++. .+.|..+++.|..-|-.+|.++ +....... ..-
T Consensus 36 ~~~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~s 109 (460)
T KOG2213|consen 36 GTSKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKAS 109 (460)
T ss_pred cchHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHHH
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHH-hccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537 245 LPALAHLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (405)
Q Consensus 245 l~~L~~ll~~~d~~v~~~a~~~l~~-l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl 312 (405)
+..|..-....|..++..++..|.. +..-..+....=++..++..+...|.+-..+-....+..|+++
T Consensus 110 l~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~l 178 (460)
T KOG2213|consen 110 LTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASL 178 (460)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
No 371
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=47.85 E-value=3.6e+02 Score=28.46 Aligned_cols=40 Identities=25% Similarity=0.133 Sum_probs=32.2
Q ss_pred hHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 193 ~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
+.+.+.+...++.++.++....++.++.++..+|..+.+.
T Consensus 182 Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~ 221 (838)
T KOG2073|consen 182 VIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRL 221 (838)
T ss_pred HHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhc
Confidence 3455566778999999997777899999998888888776
No 372
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.74 E-value=2.9e+02 Score=27.36 Aligned_cols=250 Identities=15% Similarity=0.098 Sum_probs=0.0
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (405)
++..|=+.|-.+. +..+.-|+.-++--.....+.+. .++..|-..+.+++...+..++-.|+-......
T Consensus 414 gl~~Ldkyly~de-~~~KaGaLLGig~s~~~v~~E~~-----palalLs~yl~s~s~k~~~aaiLGlg~afsGt~----- 482 (881)
T COG5110 414 GLETLDKYLYADE-SYRKAGALLGIGLSGLRVFEERP-----PALALLSNYLQSSSSKHVIAAILGLGAAFSGTQ----- 482 (881)
T ss_pred hHHHHHHHHhcCc-ccccccceeeeeecccccccccc-----hHHHHHHHhccCCchHHHHHHHhhhHHhhcCCc-----
Q ss_pred HHhcCChHHHHHhhhCCCch--hHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhc-CCChHHHHHHHHHHHHhccC
Q 015537 197 VLSQGGLVPLLAQLNGQPKL--SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDG 273 (405)
Q Consensus 197 i~~~~~i~~L~~~l~~~~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~ 273 (405)
....+..|..++ .+.+. ++...+..+|..+.-+ ........-+++.+++--. ..+.....-.+.+|+.|-.+
T Consensus 483 --~eevl~lL~Pi~-~std~pie~~~~asltLg~vFvG--tcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g 557 (881)
T COG5110 483 --AEEVLELLQPIM-FSTDSPIEVVFFASLTLGSVFVG--TCNGDLTSLILQTFVERGKIESETQWFRFLALGLASLFYG 557 (881)
T ss_pred --HHHHHHHhhhhh-cCCCCcHHHHHHHHHhhhheEee--ccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHcc
Q ss_pred ChhHHHHH------------------------HhcCChHHHHHhcC-----------CCCcchHHHHHHHHhHhhcCChh
Q 015537 274 TNDKIQAV------------------------IEAGVFPRLAEFLM-----------HPSPSVLIPALRTVGNIVTGDDM 318 (405)
Q Consensus 274 ~~~~~~~~------------------------~~~~~l~~L~~lL~-----------~~~~~v~~~a~~~l~nl~~~~~~ 318 (405)
..+....+ ...|=+-.+-.+|. ..+..+...|+..++-++.|.+.
T Consensus 558 ~~d~~d~v~eti~aIeg~ls~~~eiLv~~c~Y~GTGdvl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedi 637 (881)
T COG5110 558 RKDQVDDVEETIMAIEGALSKHEEILVKGCQYVGTGDVLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDI 637 (881)
T ss_pred ccchhHHHHHHHHHhcchhhhhHHHHHhhceecccCcHHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchh
Q ss_pred hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHH
Q 015537 319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWL 398 (405)
Q Consensus 319 ~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~a 398 (405)
..+.+ +..+-..+..+ ++.+|+..=.+.+-+...+|+ .+++..|-+.....+.+ +--++.+|
T Consensus 638 g~eMv-----lRhf~h~mhyg-~~hiR~~~PLa~gils~SnPQ-------m~vfDtL~r~shd~dl~-----v~~ntIfa 699 (881)
T COG5110 638 GSEMV-----LRHFSHSMHYG-SSHIRSVLPLAYGILSPSNPQ-------MNVFDTLERSSHDGDLN-----VIINTIFA 699 (881)
T ss_pred hHHHH-----HHHhhhHhhcC-cHHHHHHHHHHHhcccCCCcc-------hHHHHHHHHhccccchh-----HHHHHHHH
Q ss_pred Hh
Q 015537 399 CL 400 (405)
Q Consensus 399 l~ 400 (405)
+|
T Consensus 700 mG 701 (881)
T COG5110 700 MG 701 (881)
T ss_pred hh
No 373
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=47.55 E-value=1.1e+02 Score=28.11 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=47.2
Q ss_pred HHHHHHHHhccCChhHHHHHHhcC--ChHHHHHhcCCCC---cchHHHHHHHHhHhhcCChhhHHHH------HhcCchH
Q 015537 262 DACWALSYLSDGTNDKIQAVIEAG--VFPRLAEFLMHPS---PSVLIPALRTVGNIVTGDDMQTQCV------IEYQALP 330 (405)
Q Consensus 262 ~a~~~l~~l~~~~~~~~~~~~~~~--~l~~L~~lL~~~~---~~v~~~a~~~l~nl~~~~~~~~~~~------~~~g~l~ 330 (405)
.|+..+.++. .+......++..+ ++..|+++++..+ ..++..|+++|..|+.......+.+ +.+|+++
T Consensus 241 lAi~~l~~~~-~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~ 319 (329)
T PF06012_consen 241 LAIANLVYIH-PESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILP 319 (329)
T ss_pred HHHHHHHhhC-CCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHH
Confidence 3444444433 3445556677776 9999999997653 4789999999999997655433322 1456766
Q ss_pred HHHHh
Q 015537 331 CLLNL 335 (405)
Q Consensus 331 ~L~~l 335 (405)
.+++-
T Consensus 320 ~llR~ 324 (329)
T PF06012_consen 320 QLLRK 324 (329)
T ss_pred HHHHH
Confidence 66553
No 374
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.42 E-value=3.3e+02 Score=27.83 Aligned_cols=292 Identities=12% Similarity=0.138 Sum_probs=149.3
Q ss_pred CHHHHHHhhc-CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 74 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
.++.+.+.|. +.|+..+.+|-..|+.+. .+ .+ .+....-+|..++.|--+.-|..+|..+.++... .
T Consensus 6 qLe~lCk~LY~s~D~~~R~~AE~~L~e~s-~s-pe---------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t~-l 73 (1082)
T KOG1410|consen 6 QLESLCKDLYESTDPTARHRAEKALAELS-ES-PE---------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTP-L 73 (1082)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHc-cC-HH---------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCC-C
Confidence 3566666665 678999999999998884 22 11 2444444555555567778888888887765321 1
Q ss_pred HHHHhCCChHHHHHhhCCCCHH----HHHHHHHHHHHhhCCChh--hHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHH
Q 015537 153 KVVIDHGAVPIFVKLLYSPSDD----VREQAVWALGNIAGDSPR--CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~----i~~~a~~~L~nl~~~~~~--~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l 226 (405)
-......+-.+++..|....|. +....+..++.+..-+-. .++...=.+.+..+.+.+ +..+.+--.-++..|
T Consensus 74 pl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~iL 152 (1082)
T KOG1410|consen 74 PLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQIL 152 (1082)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHHH
Confidence 1111123445667777664443 344444444444422110 011111123455566666 444444344444455
Q ss_pred HHhhcCC-------CCCChhh---------hhccHHHHHhhhcCC------C---hHHHHHHHHHHHH---------hcc
Q 015537 227 SNFCRGK-------PQPPFDQ---------VSPALPALAHLIHSN------D---DEVLTDACWALSY---------LSD 272 (405)
Q Consensus 227 ~~l~~~~-------~~~~~~~---------~~~~l~~L~~ll~~~------d---~~v~~~a~~~l~~---------l~~ 272 (405)
..|...- |...... ...++..-..+|+.. | ...+..++..-.+ .++
T Consensus 153 sqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~D 232 (1082)
T KOG1410|consen 153 SQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTD 232 (1082)
T ss_pred HHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccc
Confidence 5544321 1111000 112222222222211 1 1122222221111 111
Q ss_pred CChh----------HHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcC------ChhhHHHHHhcCchHHHHHhh
Q 015537 273 GTND----------KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG------DDMQTQCVIEYQALPCLLNLL 336 (405)
Q Consensus 273 ~~~~----------~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~------~~~~~~~~~~~g~l~~L~~ll 336 (405)
.+.+ -...+.+...+..+.++..+-.+.....|+.+|..+++- +.+... .+. .+++-...++
T Consensus 233 Essed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~-yl~-~Lv~Gvk~il 310 (1082)
T KOG1410|consen 233 ESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAK-YLQ-HLVEGVKRIL 310 (1082)
T ss_pred cccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHH-HHH-HHHHHHHHHH
Confidence 1111 122345567778888888888888888899999888742 222222 222 3566666777
Q ss_pred cCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcc
Q 015537 337 SGNY---KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMF 382 (405)
Q Consensus 337 ~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~ 382 (405)
..+. ++.-=.+-|..|+.+-. + -+.-.++.-...|..++++.+.
T Consensus 311 ~np~~LsD~~nyHeFCRllaRlkt-N-YQL~ELv~v~~Y~e~irLiAeF 357 (1082)
T KOG1410|consen 311 ENPQGLSDPANYHEFCRLLARLKT-N-YQLGELVKVECYPEVIRLIAEF 357 (1082)
T ss_pred hCCcCCCCcchHHHHHHHHHHHHh-h-hhhHhhhccCCcHHHHHHHHHH
Confidence 7652 55556677777777732 2 2345666666777777776543
No 375
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=47.07 E-value=1.1e+02 Score=24.88 Aligned_cols=74 Identities=14% Similarity=0.084 Sum_probs=53.0
Q ss_pred cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC
Q 015537 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (405)
Q Consensus 200 ~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (405)
.|.+...+..+....|..+...++.++.+.... ..-.......++|.+..+|.+..+.-...++..+..+...-
T Consensus 27 ~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f 100 (164)
T PF13925_consen 27 RNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKF 100 (164)
T ss_pred cCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 445555566655667888888887777755443 23445555788999999999999888888888888776543
No 376
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=46.68 E-value=3.1e+02 Score=27.53 Aligned_cols=97 Identities=18% Similarity=0.104 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCCh--hhhhccHHHH
Q 015537 171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF--DQVSPALPAL 248 (405)
Q Consensus 171 ~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~l~~L 248 (405)
-++.++..+...|+--++.-|. .+....++.+.--.| .+.+..++..+..++..|+...|.... ......-..+
T Consensus 287 v~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rI 362 (740)
T COG5537 287 VDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRI 362 (740)
T ss_pred hhHHHHHHHHHHHHHHHhcchH---HHHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 4567777777777776665553 333333444444455 677899999999999999998876652 2235555667
Q ss_pred HhhhcCCChHHHHHHHHHHHHhc
Q 015537 249 AHLIHSNDDEVLTDACWALSYLS 271 (405)
Q Consensus 249 ~~ll~~~d~~v~~~a~~~l~~l~ 271 (405)
++++..+-.-|+..+...+.++.
T Consensus 363 LE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 363 LEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred HHHHhhccchhhHHHHHHHHHHH
Confidence 77776654448888887777764
No 377
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=46.52 E-value=41 Score=25.48 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=31.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 015537 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL 198 (405)
Q Consensus 160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~ 198 (405)
+|+.|+..|.+++++|...|+.+|...|.+. .+-+.++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 5889999999999999999999999999777 3444443
No 378
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=43.54 E-value=3e+02 Score=26.63 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=42.6
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhc-CCChHHHHHHHHHHHHhccCCh
Q 015537 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTN 275 (405)
Q Consensus 215 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~ 275 (405)
..++++.....+..+|...|.-....-..++..+-..-+ +...++-...+|+++..+....
T Consensus 281 ~~eV~rvlss~ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~ 342 (459)
T PF14764_consen 281 QAEVRRVLSSQLLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSY 342 (459)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhccccccc
Confidence 567888888888888888775555544555555544332 2357889999999999876543
No 379
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=43.23 E-value=53 Score=30.65 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=60.0
Q ss_pred HHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH-HhcccccchhhhHHHHHHHHH
Q 015537 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAF-FFMFLHFFFGAIIYKLAIWLC 399 (405)
Q Consensus 321 ~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l-L~~~~~~~~~~~vr~~A~~al 399 (405)
+++++.++++.|..+-....++.+|.++.+.+.++.....+ ..+....+..++.++ +........++.+.++-...+
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~--plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL 80 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQ--PLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELL 80 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhccc--ccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 56788899999999999887899999999999999865333 244467888888888 654433322446777777777
Q ss_pred hhhc
Q 015537 400 LVTC 403 (405)
Q Consensus 400 ~n~~ 403 (405)
...|
T Consensus 81 ~~lc 84 (353)
T PF10257_consen 81 NTLC 84 (353)
T ss_pred HHHH
Confidence 6666
No 380
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=42.93 E-value=34 Score=27.30 Aligned_cols=129 Identities=9% Similarity=0.146 Sum_probs=84.9
Q ss_pred CChhHHHHHHhcCChHHHHHhcCC-CCcchHHHHHHHHhHhhcC--ChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHH
Q 015537 273 GTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTG--DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEAC 349 (405)
Q Consensus 273 ~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~l~nl~~~--~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~ 349 (405)
++++..+.+.+.+++..+++++.. ....++...+..++-+..+ ++...-.+...+.+..++..--+-.+.++...=.
T Consensus 14 ~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYI 93 (149)
T PF09758_consen 14 NDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYI 93 (149)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHH
Confidence 345677888999999999999976 5667888888888877753 2333444556666666655443333566666655
Q ss_pred HHHHHHhc-CCHHHHHHHHH--hCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 350 WTVSNITA-GNREQIQVIMH--VHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 350 ~~L~nl~~-~~~~~~~~l~~--~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
-.|-.++- -+++.++...+ .+-+|.+.+.++-..++ ++-||-.+.-.+-|.|
T Consensus 94 sfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~--d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 94 SFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHP--DSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCc--chHHHHHHHHHHHhhc
Confidence 56666654 24555555553 67899998888877666 4567776666555543
No 381
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification]
Probab=42.92 E-value=18 Score=30.99 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=35.4
Q ss_pred chHhhhhcCCCCCchHHhhhhhHHHHHHHHHhhhHHHHhhhhccc
Q 015537 9 ADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL 53 (405)
Q Consensus 9 ~~~r~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~ 53 (405)
+..|...||+-....|.|.||++...++.|.+|-+...+-|+...
T Consensus 23 ~hpR~sQykn~~s~aeQ~arrr~~llelQks~r~D~~~~~r~lA~ 67 (325)
T KOG3132|consen 23 SHPRQSQYKNLTSDAEQRARRRASLLELQKSSRPDVDPEIRSLAV 67 (325)
T ss_pred cCchhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCccHHHHhhcc
Confidence 457899999944555666667677999999999999999998654
No 382
>PLN03205 ATR interacting protein; Provisional
Probab=42.66 E-value=75 Score=29.77 Aligned_cols=108 Identities=16% Similarity=0.127 Sum_probs=62.4
Q ss_pred hHHHHHhcCCCCcchHHHHHHHHhHhhc---CChhhHHHHHhcCchHH---HHHhhcCCCchhHHHHHHHHHHHHhc--C
Q 015537 287 FPRLAEFLMHPSPSVLIPALRTVGNIVT---GDDMQTQCVIEYQALPC---LLNLLSGNYKKSIKKEACWTVSNITA--G 358 (405)
Q Consensus 287 l~~L~~lL~~~~~~v~~~a~~~l~nl~~---~~~~~~~~~~~~g~l~~---L~~ll~~~~~~~v~~~a~~~L~nl~~--~ 358 (405)
++.|+++-.-++.-+...+++.|..+.. ++....+.-++.+.+.. +.++-.......||-+|.-+..-|.. +
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn 404 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTD 404 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccc
Confidence 3556666666666666667776655542 44444444455554433 22322223256777777655444443 2
Q ss_pred CHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHH
Q 015537 359 NREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWL 398 (405)
Q Consensus 359 ~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~a 398 (405)
.......+....++..+-++|.... +..|||+|...
T Consensus 405 a~~eREkFG~~~VfESiaQLLkkEa----Gl~VqKealhL 440 (652)
T PLN03205 405 AYTARESFVSKEVFESISLLLRKEG----GLHVRKEAIHL 440 (652)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhc----cchhhHHHHHH
Confidence 3334455556778888999997653 44899988653
No 383
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=42.47 E-value=1e+02 Score=23.01 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=48.0
Q ss_pred CChHHHHHhcCCCC--c--chHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcC-
Q 015537 285 GVFPRLAEFLMHPS--P--SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAG- 358 (405)
Q Consensus 285 ~~l~~L~~lL~~~~--~--~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~- 358 (405)
|++..+-..+.+.+ . .-+..++++++.+......... .+.|.+..+|.+. ..+.++..++-+...+...
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 55666666665443 2 3478899999988863322222 3455555555543 2457888888887777652
Q ss_pred CHHHHHHHHH
Q 015537 359 NREQIQVIMH 368 (405)
Q Consensus 359 ~~~~~~~l~~ 368 (405)
++++...+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 4555555553
No 384
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=42.24 E-value=1.5e+02 Score=22.44 Aligned_cols=70 Identities=20% Similarity=0.198 Sum_probs=44.6
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~ 190 (405)
++|.+.+.|..+..++.+..+..+++.++...+-... +++ ..+..++.-...... ..+++-+|..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~-~l~-~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDE-VLN-ALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHH-HHH-HHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 4788889998444489999999999999886433222 221 223333333332222 578899999988443
No 385
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=42.10 E-value=2.9e+02 Score=25.75 Aligned_cols=165 Identities=13% Similarity=0.093 Sum_probs=87.5
Q ss_pred hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHh-hCC----C-CHHHHHHHHHH
Q 015537 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL-LYS----P-SDDVREQAVWA 182 (405)
Q Consensus 109 ~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~l-L~~----~-~~~i~~~a~~~ 182 (405)
.+.+.+.++++.|+++-..+..+.++.++++.+.++.....+. .+....+..++.++ +.. . .+.+...-+..
T Consensus 2 lEyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~l 79 (353)
T PF10257_consen 2 LEYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVEL 79 (353)
T ss_pred hHHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 3567788899999999888766899999999999988753322 33334556677777 542 1 34455555555
Q ss_pred HHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC--CCCChhhhhccHHHHHhhhcCCChHHH
Q 015537 183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLIHSNDDEVL 260 (405)
Q Consensus 183 L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~L~~ll~~~d~~v~ 260 (405)
+..+|.. +. --+.++.++...+...-.. -....... ..........++..|+.++++. ..+-
T Consensus 80 L~~lc~~-------i~---~~P~ll~~ff~~~~~~~~~-----~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig 143 (353)
T PF10257_consen 80 LNTLCSK-------IR---KDPSLLNFFFESSPSQAQE-----EDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIG 143 (353)
T ss_pred HHHHHHH-------HH---hCHHHHHHHhcCCcccccc-----ccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHH
Confidence 6655521 00 1133444442222111000 00000000 0111112235667788888776 5555
Q ss_pred HHHHHHHHHhc---cCChhHHHHHHh-cCChHHHH
Q 015537 261 TDACWALSYLS---DGTNDKIQAVIE-AGVFPRLA 291 (405)
Q Consensus 261 ~~a~~~l~~l~---~~~~~~~~~~~~-~~~l~~L~ 291 (405)
.-|..++..+. ..++...+.+++ ..+.+.+.
T Consensus 144 ~~Are~LLll~~l~~~~~~~~~~i~~~S~fc~~la 178 (353)
T PF10257_consen 144 DFAREGLLLLMSLASEDPALAQYIVEHSDFCPVLA 178 (353)
T ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHcchhHHHHH
Confidence 55555555544 334555566666 34444433
No 386
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.07 E-value=1.1e+02 Score=32.29 Aligned_cols=96 Identities=11% Similarity=0.047 Sum_probs=73.0
Q ss_pred CChHHHHHhcCCCCcchHHHHHHHHhHhh---cCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015537 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIV---TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (405)
Q Consensus 285 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~---~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (405)
.++.+...+|++.+..+|..|+.++.-.. +..+... ...-+...|.++..+... ++-+...|+-+|-+++..+.+
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~L-lPlvhq~W~~vie~~~~k-~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLL-LPLVHQTWPSVIECLLCK-DPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhH-hHHHHhhhhHHHHHHhcC-chHHHHHHHHHHHHHHHHhhh
Confidence 56778888999999999999999886433 2222221 223346788999999998 999999999999999987777
Q ss_pred HHHHHHHhCcHHHHHHHHhcc
Q 015537 362 QIQVIMHVHAFSIIVAFFFMF 382 (405)
Q Consensus 362 ~~~~l~~~~~i~~L~~lL~~~ 382 (405)
.+..-+-..++|.+-.++..-
T Consensus 881 Fv~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777778888887666543
No 387
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=41.43 E-value=1.2e+02 Score=33.18 Aligned_cols=107 Identities=15% Similarity=0.054 Sum_probs=65.2
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHH-HHHHHHHHHhhcCCCCCCh
Q 015537 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML-RNATWTLSNFCRGKPQPPF 238 (405)
Q Consensus 160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~-~~a~~~l~~l~~~~~~~~~ 238 (405)
..|.+..++.+.++.++..++.+++.++.... ++.... .+..++.++ ...+.-.. ..+...+..++........
T Consensus 817 ~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~--~e~m~~--v~~~~~~ll-~~~~~~~~r~~a~e~~~~l~~~l~~~l~ 891 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIHIAVRYAAARCIGTMFKSAT--RETMAT--VINGFLPLL-GDLDKFVRRQGADELIELLDAVLMVGLV 891 (1549)
T ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHHHH--HHHHHH--HHHHHhhhc-cchhhHhhhhhHHHHHHHHHHhhccccc
Confidence 46777788888999999999999999985543 222111 344455555 33233333 3333344444443222222
Q ss_pred hhhhccHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 015537 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (405)
Q Consensus 239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (405)
....-+++.|...+...++.++..+..+++.+.
T Consensus 892 ~~~~Llv~pllr~msd~~d~vR~aat~~fa~li 924 (1549)
T KOG0392|consen 892 PYNPLLVVPLLRRMSDQIDSVREAATKVFAKLI 924 (1549)
T ss_pred ccceeehhhhhcccccchHHHHHHHHHHHHHHh
Confidence 233446677777887778888988888887765
No 388
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=41.15 E-value=2e+02 Score=32.55 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=78.7
Q ss_pred CcHHHHHH----HhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 015537 116 GVVPRFVE----FLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191 (405)
Q Consensus 116 g~l~~Li~----lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~ 191 (405)
+.++.++. +|.+.+ +.++.-+......+...... +....++..|+..+-+.+..-...|+.+|..|+...+
T Consensus 431 ~~f~siL~la~~Ll~S~e-~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKE-PSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH
Confidence 44555554 345565 78887777776666554322 2223456778787766666556799999999996544
Q ss_pred hhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHH----HHHHHH
Q 015537 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLT----DACWAL 267 (405)
Q Consensus 192 ~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~----~a~~~l 267 (405)
.. ...-...+..+++.+ .+-+..-.+.+...|+.++...+......-..+--.+-+.|.+.++.... .++..+
T Consensus 506 ~~--l~~fa~~l~giLD~l-~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i 582 (1426)
T PF14631_consen 506 SE--LQPFATFLKGILDYL-DNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMI 582 (1426)
T ss_dssp HH--HHHTHHHHHGGGGGG-GG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHH
Confidence 32 111122344555555 33445556666777777776542221112233333455667777766543 344445
Q ss_pred HHhcc
Q 015537 268 SYLSD 272 (405)
Q Consensus 268 ~~l~~ 272 (405)
..++.
T Consensus 583 ~~la~ 587 (1426)
T PF14631_consen 583 KHLAA 587 (1426)
T ss_dssp HHTT-
T ss_pred HHHHH
Confidence 55554
No 389
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.17 E-value=70 Score=33.58 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=67.3
Q ss_pred hhccHHHHHhhhcCCChHHHHHHHHHHHHhc----cCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCC
Q 015537 241 VSPALPALAHLIHSNDDEVLTDACWALSYLS----DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD 316 (405)
Q Consensus 241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~----~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 316 (405)
+..++..-..+|.+.+-.++..++.++.... ...+.... ++. -.=+.++..+..+++-+...|+.+|-+++...
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlP-lvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLP-LVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhH-HHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 3566677778889999999999998887643 33333332 332 23477888888899999999999999999766
Q ss_pred hhhHHHHHhcCchHHHHHhhcCC
Q 015537 317 DMQTQCVIEYQALPCLLNLLSGN 339 (405)
Q Consensus 317 ~~~~~~~~~~g~l~~L~~ll~~~ 339 (405)
.+....=+-..++|.+..++.+.
T Consensus 879 gDFv~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 879 GDFVASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 54443333336777777666543
No 390
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=39.95 E-value=1.9e+02 Score=22.90 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=46.4
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCCh
Q 015537 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238 (405)
Q Consensus 159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 238 (405)
..-..+..+|.++++++|..|+.||...- .+.. .. .-+.|-+++ |....+.-+..+. +.........
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k--~~~l----~p--Y~d~L~~Ll----dd~~frdeL~~f~-~~~~~~~I~~ 83 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWK--DPYL----TP--YKDNLENLL----DDKTFRDELTTFN-LSDESSVIEE 83 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cHHH----Hh--HHHHHHHHc----CcchHHHHHHhhc-ccCCcCCCCH
Confidence 44567888999999999999999998852 2211 11 113455555 2223333322222 2222223334
Q ss_pred hhhhccHHHHHhhh
Q 015537 239 DQVSPALPALAHLI 252 (405)
Q Consensus 239 ~~~~~~l~~L~~ll 252 (405)
..-..++|.++.+|
T Consensus 84 ehR~~l~pvvlRIL 97 (141)
T PF07539_consen 84 EHRPELMPVVLRIL 97 (141)
T ss_pred HHHhHHHHHHHHHH
Confidence 44467888888877
No 391
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=39.34 E-value=65 Score=29.14 Aligned_cols=56 Identities=32% Similarity=0.417 Sum_probs=44.1
Q ss_pred hhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC-------h-------hHHHHHHhcCChHHHHHhcC
Q 015537 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT-------N-------DKIQAVIEAGVFPRLAEFLM 295 (405)
Q Consensus 240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~-------~-------~~~~~~~~~~~l~~L~~lL~ 295 (405)
.-...+..++.-|.+++...+..++.+|.|++.|. . .+...+.+.|+++.++.+|.
T Consensus 57 ~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred hHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33567778888888899999999999999998762 1 23445677899999999883
No 392
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=39.24 E-value=48 Score=29.98 Aligned_cols=56 Identities=27% Similarity=0.372 Sum_probs=42.8
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc--------------hhHHHHHhCCChHHHHHhhC
Q 015537 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS--------------EHTKVVIDHGAVPIFVKLLY 169 (405)
Q Consensus 113 ~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~--------------~~~~~~~~~g~i~~L~~lL~ 169 (405)
.+...+..+++-|..++ ...+..|+.+|..++.|.- .+...+.+.|+++.|..+|.
T Consensus 57 ~~~~~i~~ll~~L~~~~-~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSD-SEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred hHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34567888899898887 8899999999999998752 22334667788888887775
No 393
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=37.79 E-value=2.3e+02 Score=24.02 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=48.8
Q ss_pred HHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015537 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIM 367 (405)
Q Consensus 288 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (405)
+.+.....+++.-.+..|+.+.-......+ .. -+...+..++.++ +.-|++.+.|+|..++..+++.+...+
T Consensus 118 ~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~--~~-----~l~~~~~~~~~d~-e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 118 PVMDEWSTDENFWLRRTAILHQLKYKEKTD--TD-----LLFEIILANLGSK-EFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHccC--HH-----HHHHHHHHhCCCh-HHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 566777778777677766654333222221 11 1234455666666 889999999999999998888777666
Q ss_pred Hh
Q 015537 368 HV 369 (405)
Q Consensus 368 ~~ 369 (405)
+.
T Consensus 190 ~~ 191 (208)
T cd07064 190 AA 191 (208)
T ss_pred HH
Confidence 43
No 394
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.93 E-value=6.4e+02 Score=28.21 Aligned_cols=212 Identities=13% Similarity=0.033 Sum_probs=100.9
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCC---chhHHHHHhCCChHHHHHhhC----CC------CHHHHHHHHHHHHHhhCCC
Q 015537 124 FLLREDYPQLQFEAAWALTNIASGT---SEHTKVVIDHGAVPIFVKLLY----SP------SDDVREQAVWALGNIAGDS 190 (405)
Q Consensus 124 lL~~~~~~~~~~~a~~~L~ni~~~~---~~~~~~~~~~g~i~~L~~lL~----~~------~~~i~~~a~~~L~nl~~~~ 190 (405)
+|++.+ .+++...+-|+.+|..-. .-.....+ ..+...++..+. .. ...+.+..++.-.+++.+.
T Consensus 58 ~L~h~d-~dvrllvacCvseilRi~aPeaPy~~~~l-kdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l 135 (1266)
T KOG1525|consen 58 LLKHKD-KDVRLLVACCVSEILRIYAPEAPYTDEQL-KDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLL 135 (1266)
T ss_pred HhcCCC-cChhHHHHHHHHHHHHHhCCCCCCcHHHH-HHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeec
Confidence 456677 789999999998876521 11222211 133444444333 12 2456677777777777777
Q ss_pred hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHH-HhhhcCC---ChHHHHHHHHH
Q 015537 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPAL-AHLIHSN---DDEVLTDACWA 266 (405)
Q Consensus 191 ~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L-~~ll~~~---d~~v~~~a~~~ 266 (405)
+.+.+.+.+ ....+..++ ..+.+.-..+....+..+........ ..++..+ ..++... .+.-..-+-..
T Consensus 136 ~d~~e~~~~--~f~~f~d~~-~~~~~~~v~~~~~i~~~li~e~d~v~----~e~L~~ll~~lv~~~~~~~~~a~~la~~l 208 (1266)
T KOG1525|consen 136 EDCQELVHE--LFRTFFDLA-RKGHPKKVFNMLDIAIMLITEEDTVQ----SELLDVLLENLVKPGRDTIKEADKLASDL 208 (1266)
T ss_pred cchHHHHHH--HHHHHHHHH-hccccHHHHHHHHHHHHHHHhhccch----HHHHHHHHHHhccCCCCccHHHHHHHHHH
Confidence 777666544 344444554 33333222222222222222211111 2233332 2333322 12222222222
Q ss_pred HHHhccCChhHHHHHHhcCChHHHHHhcCC---CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchh
Q 015537 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMH---PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS 343 (405)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~ 343 (405)
+..++..-...+ -..+...+.- .-..++...-..|..+....+.. =.|++|.|..-|.+. +..
T Consensus 209 i~~~a~~~~~~i--------~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~l-----l~~vip~l~~eL~se-~~~ 274 (1266)
T KOG1525|consen 209 IERCADNLEDTI--------ANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQL-----LLAVIPQLEFELLSE-QEE 274 (1266)
T ss_pred HHHhhhhhchhH--------HHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHhcc-hHH
Confidence 222222211111 1222232211 11122222222333332212211 137899999999999 999
Q ss_pred HHHHHHHHHHHHhcC
Q 015537 344 IKKEACWTVSNITAG 358 (405)
Q Consensus 344 v~~~a~~~L~nl~~~ 358 (405)
+|..|...+|.+...
T Consensus 275 ~Rl~a~~lvg~~~~~ 289 (1266)
T KOG1525|consen 275 VRLKAVKLVGRMFSD 289 (1266)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999864
No 395
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.82 E-value=50 Score=30.40 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=49.6
Q ss_pred HHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 015537 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQIQVI 366 (405)
Q Consensus 305 a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (405)
..+.|+++|...++..+.+.+.|+++.++.-..- ..+|-+++-...++.++..++.+..+.+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i 438 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKII 438 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHH
Confidence 6779999999888888889999999888765442 2388999999999999998776654443
No 396
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=36.04 E-value=1.7e+02 Score=27.51 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=63.4
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-CCC
Q 015537 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP 236 (405)
Q Consensus 159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~ 236 (405)
.++..+.+-|.+.++.|+-+|+..+..++.++ ..+|..+....+...|..++.+...+.|.......+...+... ..+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp 124 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDP 124 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCc
Confidence 35677888888999999999999999887543 4577777777788888888855678888888777777777644 333
Q ss_pred ChhhhhccHH
Q 015537 237 PFDQVSPALP 246 (405)
Q Consensus 237 ~~~~~~~~l~ 246 (405)
....+..+..
T Consensus 125 ~lsLi~~l~~ 134 (462)
T KOG2199|consen 125 SLSLISALYK 134 (462)
T ss_pred chhHHHHHHH
Confidence 4433333333
No 397
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.69 E-value=5.4e+02 Score=27.00 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=29.1
Q ss_pred hcCHHHHHHhhcCCChHHHHHHHHHHHHhhccC
Q 015537 72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIE 104 (405)
Q Consensus 72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~ 104 (405)
+..+|.++..|.++..-+-..|+.++.+++.-.
T Consensus 497 m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vr 529 (960)
T KOG1992|consen 497 MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVR 529 (960)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHhccccc
Confidence 456899999999999999999999999998765
No 398
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=35.63 E-value=1.6e+02 Score=22.25 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=31.5
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID 157 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~ 157 (405)
+++.|+.-|.+++ +++...|..+|...+... .....++.
T Consensus 9 ~i~lLv~QL~D~~-~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPS-PEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 4788888888888 899999999999999885 55555554
No 399
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=35.37 E-value=5.3e+02 Score=26.81 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=46.0
Q ss_pred ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015537 86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (405)
Q Consensus 86 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~ 148 (405)
++.+.-.++.+.+...|+- .+..++..-.++.|.+++.. +++|.+|+.|+..+....
T Consensus 206 npgl~~~cLdc~g~fVSWI---dInLIaNd~f~nLLy~fl~i---eelR~aac~cilaiVsKk 262 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWI---DINLIANDYFLNLLYKFLNI---EELRIAACNCILAIVSKK 262 (980)
T ss_pred CchHHHHHHHHHHHHhhhh---hhhhhhchhHHHHHHHHHhH---HHHHHHHHHHHHHHHhcC
Confidence 7888888999999888763 34556667788999999873 789999999999988753
No 400
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.30 E-value=71 Score=30.93 Aligned_cols=70 Identities=11% Similarity=0.029 Sum_probs=53.1
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchH-HHHhcCcHHHHHHHhcCC-CCHHHHHHHHHHHHH
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIE-EVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTN 143 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~-~~~~~g~l~~Li~lL~~~-~~~~~~~~a~~~L~n 143 (405)
+.+..+.+.+++.++.++..|+..|--+...- ..... .+.+.++++.++...+.. .+..+|..++..|-.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNC-G~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNC-GYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 45778888888888999999999777665443 34444 678899999999998876 446788888777644
No 401
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.91 E-value=2.5e+02 Score=27.36 Aligned_cols=93 Identities=12% Similarity=0.077 Sum_probs=64.5
Q ss_pred hhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHH-HHHhcCch
Q 015537 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ-CVIEYQAL 329 (405)
Q Consensus 251 ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~-~~~~~g~l 329 (405)
.+...|..+....|-.|..--.+.. .++..|.+.+.+.++.++..|+..|-.++.++..... .|.+.+++
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~~~~---------eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL 83 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEGGPK---------EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFL 83 (470)
T ss_pred cccCccHHHHHHHHHHHhcCccCcH---------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445666666666665533222222 2356777888888889999999988888866654433 67788999
Q ss_pred HHHHHhhcCC-CchhHHHHHHHHH
Q 015537 330 PCLLNLLSGN-YKKSIKKEACWTV 352 (405)
Q Consensus 330 ~~L~~ll~~~-~~~~v~~~a~~~L 352 (405)
+-++.+.... .+..||+.+.-.|
T Consensus 84 ~emVk~~k~~~~~~~Vr~kiL~LI 107 (470)
T KOG1087|consen 84 NEMVKRPKNKPRDLKVREKILELI 107 (470)
T ss_pred HHHHhccccCCcchhHHHHHHHHH
Confidence 9999999877 6778888876544
No 402
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=34.56 E-value=4.6e+02 Score=25.82 Aligned_cols=250 Identities=14% Similarity=0.084 Sum_probs=0.0
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC----------chhHHHHHhCCChHHHHHhhCC--------CCHHHHHH
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGT----------SEHTKVVIDHGAVPIFVKLLYS--------PSDDVREQ 178 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~----------~~~~~~~~~~g~i~~L~~lL~~--------~~~~i~~~ 178 (405)
+|..+.++++.+...-+|-.|+|.|+.+--.+ |..-..+=+...|...+.++-. -.+.....
T Consensus 98 vir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkv 177 (589)
T PF11229_consen 98 VIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKV 177 (589)
T ss_pred HHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHH
Q ss_pred HHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChH
Q 015537 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE 258 (405)
Q Consensus 179 a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~ 258 (405)
++..|.........- -.+--..|-.++..+-.++++..++.....=+..........-.-+.|.++.-+...
T Consensus 178 vl~~ia~vgeS~qyP-----PVNWaalLsPLMRlnfGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sLs~~--- 249 (589)
T PF11229_consen 178 VLKPIATVGESYQYP-----PVNWAALLSPLMRLNFGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSLSVN--- 249 (589)
T ss_pred HHHHhhhcCCCCCCC-----CccHHHHhhHHHhccccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhhhHH---
Q ss_pred HHHHHHHHHHHhccC-ChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHh--cCchHHHHHh
Q 015537 259 VLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE--YQALPCLLNL 335 (405)
Q Consensus 259 v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~--~g~l~~L~~l 335 (405)
.+...+.-+.-...+ .++.++.+++.=++..+-......++++...++..|.. +...+.-.+.... +...+.+.++
T Consensus 250 tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsq-AMKlP~P~~h~Ws~Lc~ttekIF~l 328 (589)
T PF11229_consen 250 TKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQ-AMKLPSPAQHCWSLLCETTEKIFDL 328 (589)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH-HhcCCChhhHHHHHHHHHHHHHHHh
Q ss_pred h----cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHH
Q 015537 336 L----SGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIV 376 (405)
Q Consensus 336 l----~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~ 376 (405)
+ +.. +-..-...+.+|+-++...-+.+..+-+.++-....
T Consensus 329 LPn~i~~~-eveLYi~vAkCLSEMtd~eidrItqitK~nieKa~F 372 (589)
T PF11229_consen 329 LPNKIQRN-EVELYIGVAKCLSEMTDTEIDRITQITKDNIEKAIF 372 (589)
T ss_pred CcccccHH-HHHHHHHHHHHHhhcCHHHHHHHHHhhhccchhhhh
No 403
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=34.27 E-value=30 Score=20.73 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=18.7
Q ss_pred CChHHHHHhcCCCCcchHHHHHHH
Q 015537 285 GVFPRLAEFLMHPSPSVLIPALRT 308 (405)
Q Consensus 285 ~~l~~L~~lL~~~~~~v~~~a~~~ 308 (405)
.+...+...+.++++.+|..|+..
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 455677778888899999888764
No 404
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=33.88 E-value=4.8e+02 Score=25.86 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=66.3
Q ss_pred CchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC----------CChHHHHHHHHHHHHhccCChhHHHHHHh
Q 015537 214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----------NDDEVLTDACWALSYLSDGTNDKIQAVIE 283 (405)
Q Consensus 214 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~----------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~ 283 (405)
.|...+.++...++.|..++.-.....+..++|.++.++-+ +...++.-|+..+.+++.......+. +.
T Consensus 259 ~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~ 337 (576)
T KOG2549|consen 259 NNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQ 337 (576)
T ss_pred ccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HH
Confidence 46778888888889998886555556668888888776632 12457788888899988776655543 44
Q ss_pred cCChHHHHHhcCCC--CcchHHHHHHHHhHhh
Q 015537 284 AGVFPRLAEFLMHP--SPSVLIPALRTVGNIV 313 (405)
Q Consensus 284 ~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~ 313 (405)
..++..+.+.+.++ ......-++..|..+.
T Consensus 338 ~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 338 PRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred HHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 55666666666554 3345555666655553
No 405
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=33.57 E-value=2.7e+02 Score=22.87 Aligned_cols=108 Identities=11% Similarity=0.120 Sum_probs=56.1
Q ss_pred CChHHHHHhcCCCCcchHHHHHHHHhHhh-cCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc------
Q 015537 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIV-TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA------ 357 (405)
Q Consensus 285 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~-~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~------ 357 (405)
|.=+-|.+.+.+....-...|+.++..+. .-.++....+++. +++.+.+.|.++.+ -..-+|+|.--++
T Consensus 42 ~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~~~~~-L~~~~~~~L~~p~~---~d~~~W~LAl~~a~~~~Iq 117 (174)
T PF04510_consen 42 GGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIPFMEN-LLPEISKVLLPPEE---VDVEDWVLALTGAVCMAIQ 117 (174)
T ss_pred CCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHHHHHH-HHHHHHHHcCCchh---ccHHHHHHHHHHHHHHHHH
Confidence 33344444443322333456777777776 3444555556664 88888888877732 2334455443221
Q ss_pred --CC---HHHHHHHHHhCcHHHHHHHHhccccc--------chhhhHHHHHHH
Q 015537 358 --GN---REQIQVIMHVHAFSIIVAFFFMFLHF--------FFGAIIYKLAIW 397 (405)
Q Consensus 358 --~~---~~~~~~l~~~~~i~~L~~lL~~~~~~--------~~~~~vr~~A~~ 397 (405)
.+ .+..+.++. -++..+.+++..+... .++..+++++.|
T Consensus 118 l~e~~~~~~~vk~L~~-~mv~Sv~elV~~g~E~~~l~rgl~~~e~~v~~~~~~ 169 (174)
T PF04510_consen 118 LLESSMRVDLVKELLP-KMVKSVKELVERGMEVGFLRRGLRDFESFVSRQMNW 169 (174)
T ss_pred HhccccHHHHHHHHHH-HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 233333332 2566666666666551 144556666655
No 406
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=32.99 E-value=4.6e+02 Score=25.37 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHH
Q 015537 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (405)
Q Consensus 87 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~ 166 (405)
...+..|+.+|..+++.-..+....+.+ +.|...|++.. ..-|.-|+.+|...+.........-.-....+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 4677888999988876532333333322 26888998887 677888888888887754322111101133466667
Q ss_pred hhCCC
Q 015537 167 LLYSP 171 (405)
Q Consensus 167 lL~~~ 171 (405)
.|..+
T Consensus 176 ~L~~~ 180 (441)
T PF12054_consen 176 ILENP 180 (441)
T ss_pred HHcCC
Confidence 77643
No 407
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=32.15 E-value=2e+02 Score=24.27 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=29.0
Q ss_pred chHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 015537 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFF 379 (405)
Q Consensus 300 ~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL 379 (405)
.+...+++.|..++.++......+.+. ++.+...+... ....--.+.-++..+..++++....+.+.. +..+++++
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~-~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll 151 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL-QIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC-CH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh-hccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHH
Confidence 567889999999999887665545432 33222222221 111112345566667677777666654433 66777766
Q ss_pred hc
Q 015537 380 FM 381 (405)
Q Consensus 380 ~~ 381 (405)
..
T Consensus 152 ~~ 153 (207)
T PF01365_consen 152 RK 153 (207)
T ss_dssp --
T ss_pred HH
Confidence 55
No 408
>PF15573 Imm27: Immunity protein 27
Probab=31.95 E-value=2.5e+02 Score=24.09 Aligned_cols=91 Identities=15% Similarity=0.152 Sum_probs=51.7
Q ss_pred HHHHHhcCCC-CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 015537 288 PRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVI 366 (405)
Q Consensus 288 ~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (405)
+.|++++.+. +..+..-+.|.+..+|++++ +.+.+=+. +|.+. .+.++.+ ++.+ ...-
T Consensus 49 ~LLiqLMN~TkDE~vLNLCiRlFcSV~THdD-----L~~~nNl~----FLs~a-----sE~~v~T---F~s~----A~~t 107 (259)
T PF15573_consen 49 NLLIQLMNQTKDEAVLNLCIRLFCSVATHDD-----LRDSNNLR----FLSSA-----SEFGVFT---FASG----AITT 107 (259)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhhcchHh-----hhccccee----hHhhh-----hHHHHHH---HHHH----hhcc
Confidence 6788888654 55677778899999998776 22323222 22222 1222222 2211 1112
Q ss_pred HHhCcHHHHHHHHhcccc-cchhhhHHHHHHHHH
Q 015537 367 MHVHAFSIIVAFFFMFLH-FFFGAIIYKLAIWLC 399 (405)
Q Consensus 367 ~~~~~i~~L~~lL~~~~~-~~~~~~vr~~A~~al 399 (405)
++..++|.|+.++..=++ ...+..||...-|.|
T Consensus 108 lSyeVIPYLLaLleeWed~td~~~~Irdsld~fl 141 (259)
T PF15573_consen 108 LSYEVIPYLLALLEEWEDITDTEIAIRDSLDSFL 141 (259)
T ss_pred chhhHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 356789999999987655 234455666555544
No 409
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=31.41 E-value=2.2e+02 Score=21.19 Aligned_cols=87 Identities=9% Similarity=0.040 Sum_probs=47.9
Q ss_pred CchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHh
Q 015537 214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293 (405)
Q Consensus 214 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l 293 (405)
+.+.+.....|++.+.... ..++..+...+....+.-+..++..+-.++.+............+.+.+...
T Consensus 17 S~~~I~~lt~~a~~~~~~a---------~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~ 87 (114)
T cd03562 17 SQPSIQTLTKLAIENRKHA---------KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDA 87 (114)
T ss_pred cHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 5566777777777776332 3455566666666666666666666666665544333333433334444444
Q ss_pred cCCCCcchHHHHHHHH
Q 015537 294 LMHPSPSVLIPALRTV 309 (405)
Q Consensus 294 L~~~~~~v~~~a~~~l 309 (405)
....++.++....+.+
T Consensus 88 ~~~~~~~~r~kl~rl~ 103 (114)
T cd03562 88 YEKVDEKTRKKLERLL 103 (114)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 4445555554444333
No 410
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=31.20 E-value=1.3e+02 Score=25.41 Aligned_cols=101 Identities=12% Similarity=0.126 Sum_probs=41.4
Q ss_pred hHHHHHhCCChHHHHHhhCC---CC---------------HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhC
Q 015537 151 HTKVVIDHGAVPIFVKLLYS---PS---------------DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212 (405)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~---~~---------------~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~ 212 (405)
.++.+.+.|++..++.+|.. .. ..+...+...|..++.+++..+..+.+. ++.++..+..
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~ 112 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQ 112 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHC
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHH
Confidence 33445555666666666653 11 3677889999999999888877766553 3323333322
Q ss_pred CCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC
Q 015537 213 QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254 (405)
Q Consensus 213 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~ 254 (405)
.. ...-..+..++..+..+++..........+..++.++..
T Consensus 113 ~~-~~~~~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~ll~~ 153 (207)
T PF01365_consen 113 LQ-IGYGLGALDVLTEIFRDNPELCESISEEHIEKFIELLRK 153 (207)
T ss_dssp CC-H-TTHHHHHHHHHHHTT----------------------
T ss_pred hh-ccCCchHHHHHHHHHHCcHHHHHHhhHHHHHHHHHHHHH
Confidence 11 111123444555566655444444444456666666654
No 411
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=30.86 E-value=2e+02 Score=23.75 Aligned_cols=74 Identities=19% Similarity=0.228 Sum_probs=53.0
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc
Q 015537 206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 284 (405)
Q Consensus 206 L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 284 (405)
++.....+++.-+++.+.-++...... ......+++.+-.++.+++.-|+..+.|+|..++...++.+..+++.
T Consensus 109 ~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~ 182 (197)
T cd06561 109 LLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEK 182 (197)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 344444888888888888888776655 11234566777777777888999999999999988777655544433
No 412
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.30 E-value=5.9e+02 Score=27.64 Aligned_cols=134 Identities=12% Similarity=0.004 Sum_probs=83.1
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH--HhcCCh
Q 015537 126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV--LSQGGL 203 (405)
Q Consensus 126 ~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i--~~~~~i 203 (405)
.+-. +++|..++..|+--...-|+ .+++...+.++--.|.+.+..|+..++.+|-.|....... ..+ .-..+=
T Consensus 297 RDV~-~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~-~~L~lFtsRFK 371 (1048)
T KOG2011|consen 297 RDVD-PDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDK-DKLELFTSRFK 371 (1048)
T ss_pred ccCc-hHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccc-hHHHHHHHHHH
Confidence 3444 89999999999887776454 5777788899999999999999999999999998663211 111 111122
Q ss_pred HHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHH
Q 015537 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSY 269 (405)
Q Consensus 204 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~ 269 (405)
..++.+...+.+..|+...+..+..+.... .....-+..+..++.+.++.++.++...+..
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~~~~~~~~g-----~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVLCLLLSSSG-----LLSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHhccc-----ccChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 345555534556666655555444443221 0111233345566666677777666655543
No 413
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=29.26 E-value=2.4e+02 Score=20.99 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=47.8
Q ss_pred CChHHHHHhcCC----CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcC-
Q 015537 285 GVFPRLAEFLMH----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAG- 358 (405)
Q Consensus 285 ~~l~~L~~lL~~----~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~- 358 (405)
|++..+-..+.+ .+...+..+++.|+.+..-...... .+.|.+...|.+. ..+.++..++-+...+...
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 455555555544 4456788899999999863333322 3455566666543 2447888888887777652
Q ss_pred CHHHHHHHH
Q 015537 359 NREQIQVIM 367 (405)
Q Consensus 359 ~~~~~~~l~ 367 (405)
+++....++
T Consensus 86 ~~~~l~~ll 94 (107)
T PF08064_consen 86 DEEDLGPLL 94 (107)
T ss_pred CHHHHHHHH
Confidence 445455544
No 414
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=28.72 E-value=3.6e+02 Score=26.98 Aligned_cols=60 Identities=22% Similarity=0.120 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHHHhhcCC-CCCChhhhhccHHHH-HhhhcCCChHHHHHHHHHHHHhccCC
Q 015537 215 KLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPAL-AHLIHSNDDEVLTDACWALSYLSDGT 274 (405)
Q Consensus 215 ~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L-~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (405)
...++-.++..++.+.... |........+.+..| ..+|.+.+.-+...|+.++++++...
T Consensus 493 p~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 493 PDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERT 554 (559)
T ss_pred CccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccC
Confidence 3335555555555555544 222222222222222 23445566777777777777776543
No 415
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=28.59 E-value=2.6e+02 Score=25.28 Aligned_cols=130 Identities=17% Similarity=0.094 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChH
Q 015537 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV 204 (405)
Q Consensus 131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~ 204 (405)
.+.+..|+.+|.+=+.- ...+|+++.++.. .+-......+...+.+..+..-+-+-.+ +..++
T Consensus 212 ~~~r~aAl~sLr~dsGl----------hQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~-hqlmP 280 (450)
T COG5095 212 EQTRDAALESLRNDSGL----------HQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYL-HQLMP 280 (450)
T ss_pred HHHHHHHHHHhccCccH----------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHH-HHHHH
Confidence 56666666666542211 0257788877764 2444444455555555443321211111 12445
Q ss_pred HHHHhhh-----CCC----chhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHh-hhcCCC-hHHHHHHHHHHHHhc
Q 015537 205 PLLAQLN-----GQP----KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH-LIHSND-DEVLTDACWALSYLS 271 (405)
Q Consensus 205 ~L~~~l~-----~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~-ll~~~d-~~v~~~a~~~l~~l~ 271 (405)
.++.++. +.+ ...++..|+..+...+...+..-...-..+...+.+ +|.... .....-|+.+++-+.
T Consensus 281 SilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ 358 (450)
T COG5095 281 SILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS 358 (450)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence 5555442 222 234778888888888877654333332333333333 232222 334455566665554
No 416
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=27.80 E-value=1.8e+02 Score=21.69 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=45.1
Q ss_pred CcHHHHHHHhcCCC---CHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCC
Q 015537 116 GVVPRFVEFLLRED---YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGD 189 (405)
Q Consensus 116 g~l~~Li~lL~~~~---~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~ 189 (405)
|++..+.+.+.+.. +..-|..++.+++.+...... .+. .+.|.+...|++ ..++++..|+.+...+...
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~---~i~--~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGK---HIS--SALPQIMACLQSALEIPELRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence 56666766665543 345688888888877663111 111 456777777776 5778999998888887643
No 417
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.54 E-value=36 Score=24.59 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=23.2
Q ss_pred hHhhhhcCC-CCCchHHhhhhhHHHHHHHH
Q 015537 10 DSRRNKYKV-AVDADEGRRRREDNMVEIRK 38 (405)
Q Consensus 10 ~~r~~~~k~-~~~~~~~r~~r~~~~~~lRk 38 (405)
.+|-.-|++ --|+.|.||||-+.+...++
T Consensus 68 gDRVEIyRPLlaDPKE~RR~Ra~~~~~~~~ 97 (99)
T COG2914 68 GDRVEIYRPLLADPKEARRKRAERAAAAKK 97 (99)
T ss_pred CCEEEEecccccChHHHHHHHHHHHHHhhc
Confidence 578888999 88999999999777655543
No 418
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.36 E-value=6.3e+02 Score=25.12 Aligned_cols=267 Identities=13% Similarity=0.070 Sum_probs=132.5
Q ss_pred CcHHHHHHHhcCCCC--HHHHHHHHHHHHHHhcCCchhHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhC----
Q 015537 116 GVVPRFVEFLLREDY--PQLQFEAAWALTNIASGTSEHTKVVIDH-GAVPIFVKLLYSPSDDVREQAVWALGNIAG---- 188 (405)
Q Consensus 116 g~l~~Li~lL~~~~~--~~~~~~a~~~L~ni~~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~---- 188 (405)
.++..+..+|+.++. ...-.+++.+++.-.....--.+.+... -.+..+...++ +..+-+.|..++.-+-.
T Consensus 153 ~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~--~~~lhe~At~cic~ll~~~~~ 230 (559)
T KOG2081|consen 153 KVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLS--DDELHEEATECICALLYCSLD 230 (559)
T ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcc--cchhhHHHHHHHHHHHHHhhh
Confidence 356677777765441 3556677777766444322333445544 45666666666 44555555555554432
Q ss_pred ---CChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC---CChhhhhccHHHHHhhhcCCChHHHHH
Q 015537 189 ---DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ---PPFDQVSPALPALAHLIHSNDDEVLTD 262 (405)
Q Consensus 189 ---~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~~l~~L~~ll~~~d~~v~~~ 262 (405)
+.+.....+...-.++...++-....|.+-..+.+..+..+++.... ......-.++..++-...+++.++.+.
T Consensus 231 ~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~ 310 (559)
T KOG2081|consen 231 RSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEA 310 (559)
T ss_pred hhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhh
Confidence 11111112222223444444444566777888888888888775310 000111223333444446677777777
Q ss_pred HHHHHHHhccC----ChhHHHHHHhc---CChHHHHHhcCCCC---------c---chHHHHHHHHhHhhc--CChhhHH
Q 015537 263 ACWALSYLSDG----TNDKIQAVIEA---GVFPRLAEFLMHPS---------P---SVLIPALRTVGNIVT--GDDMQTQ 321 (405)
Q Consensus 263 a~~~l~~l~~~----~~~~~~~~~~~---~~l~~L~~lL~~~~---------~---~v~~~a~~~l~nl~~--~~~~~~~ 321 (405)
....=..+... +++..-.++.. ..+..+...++.+. . +.+..+...+-.++. |+++
T Consensus 311 SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e--- 387 (559)
T KOG2081|consen 311 SFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDE--- 387 (559)
T ss_pred hHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHH---
Confidence 65544444321 11111111111 12223333332221 1 123333333322221 2222
Q ss_pred HHHhcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHH
Q 015537 322 CVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLC 399 (405)
Q Consensus 322 ~~~~~g~l~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al 399 (405)
.+..+..-+.. ..+.+..+.+.+.+.+++.. .++ +..++|..++++-+.... ..+|..++..+
T Consensus 388 ------~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~------e~~i~pevl~~i~nlp~Q---~~~~~ts~ll~ 452 (559)
T KOG2081|consen 388 ------CLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPE------ENTIMPEVLKLICNLPEQ---APLRYTSILLL 452 (559)
T ss_pred ------HHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCcc------ccchHHHHHHHHhCCccc---hhHHHHHHHHH
Confidence 22223333333 33778889999999999764 232 467778888777665444 24777777777
Q ss_pred hhh
Q 015537 400 LVT 402 (405)
Q Consensus 400 ~n~ 402 (405)
|-.
T Consensus 453 g~~ 455 (559)
T KOG2081|consen 453 GEY 455 (559)
T ss_pred HHH
Confidence 654
No 419
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=27.35 E-value=22 Score=30.68 Aligned_cols=23 Identities=13% Similarity=-0.023 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHhhhHHHHhhhh
Q 015537 28 RREDNMVEIRKNKREESLQKKRR 50 (405)
Q Consensus 28 ~r~~~~~~lRk~~r~~~l~~~R~ 50 (405)
-|+.+..++|+.||++.+..+|.
T Consensus 11 ~r~~~~~~~~~~k~~~~~~~~r~ 33 (225)
T cd01882 11 ARQFQRTADIEEKKLHVPVVDRT 33 (225)
T ss_pred HHHHHHHHHhhhccccceeeccc
Confidence 45567889999999999999996
No 420
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=27.29 E-value=7.2e+02 Score=25.79 Aligned_cols=44 Identities=16% Similarity=0.097 Sum_probs=32.8
Q ss_pred CChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 189 DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 189 ~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
-.|.+|..+.+.|++..+++.+..+........+..+|.+|-..
T Consensus 363 ~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs~ 406 (865)
T KOG2152|consen 363 VMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLSR 406 (865)
T ss_pred cChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHhh
Confidence 45789999999999999999997666555555555566665544
No 421
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=27.23 E-value=2e+02 Score=21.33 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=45.2
Q ss_pred CcHHHHHHHhcC---CCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCC
Q 015537 116 GVVPRFVEFLLR---EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGD 189 (405)
Q Consensus 116 g~l~~Li~lL~~---~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~ 189 (405)
|++..+-+.+.+ ..+...+..++..|+.+..-...... .+.|.+...|++ ..++++..++.+...+...
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 556666666655 33367788888888887763222221 345667777765 4568888888888877643
No 422
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=27.09 E-value=8.5e+02 Score=30.53 Aligned_cols=180 Identities=14% Similarity=0.075 Sum_probs=91.3
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc--CC--hHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ--GG--LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (405)
Q Consensus 159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~--~~--i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 234 (405)
+.+..++.-|.++++.+++.+..+|.+++.....-...+++. .. .+....-+ .......+.-.+.++..+....|
T Consensus 1126 ~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~l-r~~p~~~qig~vd~~~fC~~l~p 1204 (3550)
T KOG0889|consen 1126 NVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPL-RALPFTIQIGHLDAITFCLSLGP 1204 (3550)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccccc-ccCCHHHHhhhHHHHHHHHHcCC
Confidence 678888888999999999999999999986542222222110 00 00000111 12222222222222322222221
Q ss_pred C-CChh-hhhccHHH--------------HHhhhcCCC----hHHHHHHHHHHHHhccCChhHHHH--HHhcCChHHHHH
Q 015537 235 Q-PPFD-QVSPALPA--------------LAHLIHSND----DEVLTDACWALSYLSDGTNDKIQA--VIEAGVFPRLAE 292 (405)
Q Consensus 235 ~-~~~~-~~~~~l~~--------------L~~ll~~~d----~~v~~~a~~~l~~l~~~~~~~~~~--~~~~~~l~~L~~ 292 (405)
. -+.. ........ +.+.....+ ...+..+..+++......+..... -...+++..+..
T Consensus 1205 ~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk 1284 (3550)
T KOG0889|consen 1205 CLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFK 1284 (3550)
T ss_pred cccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHH
Confidence 1 1111 00111111 111111111 123455555555544333332111 123467788888
Q ss_pred hcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC
Q 015537 293 FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN 339 (405)
Q Consensus 293 lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~ 339 (405)
.|..+.+++...+..++..+...+.......+..+.=|.|..+-++.
T Consensus 1285 ~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~~ 1331 (3550)
T KOG0889|consen 1285 SLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSDHN 1331 (3550)
T ss_pred HHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhHhh
Confidence 88888899999998888888877655555566655556666555444
No 423
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=26.40 E-value=2.5e+02 Score=20.21 Aligned_cols=57 Identities=16% Similarity=0.028 Sum_probs=39.0
Q ss_pred CchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCC--hHHHHHHHHHHHHh
Q 015537 214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYL 270 (405)
Q Consensus 214 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~l~~l 270 (405)
.+-.++..|+..+..+|+......-.....+...+.+.+.+++ ....--|+.+|..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4678899999999999987643333333466667777666443 45666677777776
No 424
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=26.06 E-value=1.6e+02 Score=17.99 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=20.9
Q ss_pred HHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHH
Q 015537 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (405)
Q Consensus 288 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 321 (405)
..++++|.++++..+...+.+|+.+..-++...+
T Consensus 10 Nvl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~ 43 (46)
T PF01465_consen 10 NVLLQFLESREPSEREQLLPVIATLLKFSPEEKQ 43 (46)
T ss_dssp HHHHHHHTTSS---HHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHH
Confidence 3567777777777777788888888876665544
No 425
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.92 E-value=3.2e+02 Score=30.43 Aligned_cols=21 Identities=5% Similarity=-0.073 Sum_probs=12.9
Q ss_pred CCchhHHHHHHHHHHHhhcCC
Q 015537 213 QPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 213 ~~~~~~~~~a~~~l~~l~~~~ 233 (405)
....+++.....++.++-...
T Consensus 853 ~~~~evr~~sl~~l~silet~ 873 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETV 873 (1610)
T ss_pred CccceeeHHHHHHHHHHHhcc
Confidence 345566666667777666553
No 426
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=25.80 E-value=3.6e+02 Score=21.77 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=52.3
Q ss_pred HHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHH-hhcCCC-chhHHHHHHHHHHHHh
Q 015537 279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN-LLSGNY-KKSIKKEACWTVSNIT 356 (405)
Q Consensus 279 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~-ll~~~~-~~~v~~~a~~~L~nl~ 356 (405)
..+++..+.+.+...+.+.++.+...+++++..+...-....+.-++ -+++.+.. ++.++. ...-|..+.-++..++
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 34666678888888887778899999999999998533222221111 14455555 666552 2356666778888887
Q ss_pred cCCHH
Q 015537 357 AGNRE 361 (405)
Q Consensus 357 ~~~~~ 361 (405)
. .|.
T Consensus 146 ~-~p~ 149 (168)
T PF12783_consen 146 K-DPQ 149 (168)
T ss_pred h-Chh
Confidence 5 344
No 427
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=25.46 E-value=2.9e+02 Score=20.68 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=30.0
Q ss_pred CcchHHHHHHHHhHhhcC-ChhhHHHHHhcCchHHHHHhhcC
Q 015537 298 SPSVLIPALRTVGNIVTG-DDMQTQCVIEYQALPCLLNLLSG 338 (405)
Q Consensus 298 ~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~g~l~~L~~ll~~ 338 (405)
+.++...++.+|..++.| ..+....+.+..+++.+..++..
T Consensus 66 ~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 66 NIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 345667788888888888 45666667788888888887753
No 428
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=25.18 E-value=1.4e+02 Score=20.09 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=27.2
Q ss_pred cCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcC
Q 015537 326 YQALPCLLNLLSGN-YKKSIKKEACWTVSNITAG 358 (405)
Q Consensus 326 ~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~ 358 (405)
.|+...++.++.+. .+..+|..|+-.|-|....
T Consensus 13 p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~ 46 (77)
T PF03810_consen 13 PGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKK 46 (77)
T ss_dssp TCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 48899999999444 3789999999999998753
No 429
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=24.77 E-value=3.1e+02 Score=23.89 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=51.1
Q ss_pred hccHHHHHhhhcCCChHHHHHHHHHHHHhcc----CC----------------------hh-HHHHHH--hcCChHHHHH
Q 015537 242 SPALPALAHLIHSNDDEVLTDACWALSYLSD----GT----------------------ND-KIQAVI--EAGVFPRLAE 292 (405)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~----~~----------------------~~-~~~~~~--~~~~l~~L~~ 292 (405)
..+-..++.++.+.++.++..++..+..+.. +. +- ....+. ..+.+..|+.
T Consensus 42 ~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~ 121 (239)
T PF11935_consen 42 NELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLD 121 (239)
T ss_dssp HHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 3444556677777777787777766655431 10 00 011111 1266788888
Q ss_pred hcCCCC--cchHHHHHHHHhHhhcCChhhHHHHH
Q 015537 293 FLMHPS--PSVLIPALRTVGNIVTGDDMQTQCVI 324 (405)
Q Consensus 293 lL~~~~--~~v~~~a~~~l~nl~~~~~~~~~~~~ 324 (405)
.+.++. ..+...++.+|++|+...+.....++
T Consensus 122 ~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il 155 (239)
T PF11935_consen 122 VLQSPHISSPLLTAIINSLSNIAKQRPQFMSRIL 155 (239)
T ss_dssp HHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 887665 67788899999999988876665443
No 430
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=23.52 E-value=1.2e+02 Score=18.65 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=9.6
Q ss_pred hcCCCCCchHHhhhh
Q 015537 15 KYKVAVDADEGRRRR 29 (405)
Q Consensus 15 ~~k~~~~~~~~r~~r 29 (405)
..-+..|++|+++|-
T Consensus 6 gl~pk~DPeE~k~km 20 (51)
T PF15178_consen 6 GLGPKMDPEEMKRKM 20 (51)
T ss_pred cCCCCCCHHHHHHHH
Confidence 334467888887643
No 431
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=23.33 E-value=1.3e+02 Score=29.22 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=51.5
Q ss_pred hHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (405)
Q Consensus 287 l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (405)
...+-.+-.+.+++++..+..++++++.........+-+..+-..++.++..+ .+++-+.++.++.-+.
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhh
Confidence 34444555678899999999999999987665544344455677788888888 8888888888887664
No 432
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=22.88 E-value=2.8e+02 Score=23.77 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=46.3
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhccCCCC-chHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015537 77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSP-PIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147 (405)
Q Consensus 77 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~-~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~ 147 (405)
.+.+.|-++|+.++..|+..++..++..... .-..+. .+-.-|.-.+-.++-|.+|.+.+.-|+.+...
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~--kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~ 73 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDML--KLWKGLFYCMWMSDKPLVQEELAEELASLIHS 73 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Confidence 5788899999999999999999998765222 112221 22333444444444478888888877777653
No 433
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=21.67 E-value=3.5e+02 Score=30.70 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=73.3
Q ss_pred CCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHH
Q 015537 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA 291 (405)
Q Consensus 212 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~ 291 (405)
.+.++.++..+......+..... ...-..++..|+.++-+++..-...|+..|..|+....+..... +..+..++
T Consensus 445 ~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l~giL 519 (1426)
T PF14631_consen 445 RSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFLKGIL 519 (1426)
T ss_dssp TSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHHHGGG
T ss_pred hCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHH
Confidence 56677777777776666666542 11124577777777655555445678888888886554432211 12333444
Q ss_pred HhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHH----HHHHHHHHhc
Q 015537 292 EFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE----ACWTVSNITA 357 (405)
Q Consensus 292 ~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~----a~~~L~nl~~ 357 (405)
+.+..=+..-......+++.++........ -+...+.-.+-+.|.++ ++..++. |+-.+..+++
T Consensus 520 D~l~~Ls~~qiR~lf~il~~La~~~~~~~s-~i~del~ivIRKQLss~-~~~~K~~GIIGav~~i~~la~ 587 (1426)
T PF14631_consen 520 DYLDNLSLQQIRKLFDILCTLAFSDSSSSS-SIQDELHIVIRKQLSSS-NPKYKRIGIIGAVMMIKHLAA 587 (1426)
T ss_dssp GGGGG--HHHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-S-SHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHhhcCC-cHHHHHHhHHHHHHHHHHHHH
Confidence 444443444455677888887754322222 23334555566777777 6666654 3444444444
No 434
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=21.66 E-value=3.5e+02 Score=20.24 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=31.3
Q ss_pred CCChHHHHHHHHHHHHhccC-ChhHHHHHHhcCChHHHHHhcC
Q 015537 254 SNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLM 295 (405)
Q Consensus 254 ~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~ 295 (405)
..+-++...++.+|..++.+ ..+....+.+..+++.+..+|.
T Consensus 64 ~~~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~ 106 (109)
T PF08454_consen 64 SDNIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLS 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHh
Confidence 34466777788888888887 5667777788888888887774
No 435
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=21.53 E-value=1.2e+02 Score=29.45 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=42.0
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015537 126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187 (405)
Q Consensus 126 ~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~ 187 (405)
-..+ +.++.+|..++++++......+..+-+...-..++.++-.+.+++-+.+..++..+.
T Consensus 338 a~~n-~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 338 AHKN-PELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred cccC-hHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 3444 899999999999999984443332223334456677777777777777777777655
No 436
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=21.51 E-value=18 Score=36.04 Aligned_cols=149 Identities=11% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHhcCCchhHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhH
Q 015537 140 ALTNIASGTSEHTKVVIDH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM 218 (405)
Q Consensus 140 ~L~ni~~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~ 218 (405)
+..++++. .+++..+... -...+|+..-+-.-..+..+++.+.+|++. ..-..+-....+..+.+-+ .+.|..+
T Consensus 16 v~r~LSf~-~~n~~~~~~~~p~~~~lVm~a~~~ws~~~Vqal~s~~nlaq---pt~~e~S~~~~L~t~t~Gi-~S~drfl 90 (847)
T KOG2312|consen 16 VSRMLSFK-RQNQQQHSPAPPPQQVLVMVAQPQWSQMQVQALQSNANLAQ---PTSGESSLIKQLLTPTRGI-SSPDRFL 90 (847)
T ss_pred eeeeeccc-hhhhcccCCCCChhheeeeecccccchhhhHhhhhhcccCC---cchhhhhHHHHHhhhccCC-CCCCcee
Q ss_pred HHHHHHHHHHhhcCCCCCChhhh---hccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc-CChHHHHHh
Q 015537 219 LRNATWTLSNFCRGKPQPPFDQV---SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEF 293 (405)
Q Consensus 219 ~~~a~~~l~~l~~~~~~~~~~~~---~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~l 293 (405)
.-.+..++..||...++.....- ......++..+.-.|.-.....+.+|..|+.-.+-.+..+.+. +.+..|+.+
T Consensus 91 imr~lEIl~~lcgrEgN~qvIc~~l~~d~y~~iv~~ltl~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl 169 (847)
T KOG2312|consen 91 IMRALEILPPLCGREGNPQVICQVLSNDAYGFIVQGLTLADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSL 169 (847)
T ss_pred EeeccccCcccccCCCCceeehhhhchHHHHHHHhccchhHeehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhcc
No 437
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.20 E-value=1e+03 Score=25.37 Aligned_cols=148 Identities=14% Similarity=0.191 Sum_probs=88.8
Q ss_pred HHhcCcHHHHHHHhc----CCC-CH---HHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-----CCHHHHHH
Q 015537 112 VIRSGVVPRFVEFLL----RED-YP---QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----PSDDVREQ 178 (405)
Q Consensus 112 ~~~~g~l~~Li~lL~----~~~-~~---~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~i~~~ 178 (405)
+...|.+..|++-|. +++ +| ..-+.++.++-.++.+....-. ..+|.++....+ .++.+...
T Consensus 454 ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~-----~~i~rl~~~~asik~S~~n~ql~~T 528 (982)
T KOG2022|consen 454 ILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES-----TWIPRLFETSASIKLSAPNPQLLST 528 (982)
T ss_pred HHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh-----HHHHHHHHhccccccccCChhHHHH
Confidence 344555666655543 222 12 3345555666666664322211 237777776654 47888888
Q ss_pred HHHHHHHhhC---CChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCC
Q 015537 179 AVWALGNIAG---DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN 255 (405)
Q Consensus 179 a~~~L~nl~~---~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~ 255 (405)
+...+|.++. +.|.. -.-.++.|++-+ . +.+.-..+...+..||+..+..-.....+++..+-.++...
T Consensus 529 ss~~igs~s~~l~e~P~~-----ln~sl~~L~~~L-h--~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~ 600 (982)
T KOG2022|consen 529 SSDLIGSLSNWLGEHPMY-----LNPSLPLLFQGL-H--NSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKS 600 (982)
T ss_pred HHHHHHHHHHHHhcCCcc-----cCchHHHHHHHh-c--CchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccc
Confidence 8888887763 33321 112455566655 2 44445556666999998876555555567777777777665
Q ss_pred C--hHHHHHHHHHHHHhcc
Q 015537 256 D--DEVLTDACWALSYLSD 272 (405)
Q Consensus 256 d--~~v~~~a~~~l~~l~~ 272 (405)
+ +..+.....+++++..
T Consensus 601 ~~~~S~~~klm~sIGyvls 619 (982)
T KOG2022|consen 601 NAKDSDRLKLMKSIGYVLS 619 (982)
T ss_pred ccCchHHHHHHHHHHHHHH
Confidence 3 6778888899999864
No 438
>KOG2219 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.81 E-value=4.3e+02 Score=26.74 Aligned_cols=165 Identities=20% Similarity=0.219 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHHhh----CCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhh---hc
Q 015537 171 PSDDVREQAVWALGNIA----GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV---SP 243 (405)
Q Consensus 171 ~~~~i~~~a~~~L~nl~----~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~---~~ 243 (405)
.+..+...++.+++.|. .+++.+-+.+++...+-.++++|.......+-...+.++.-|.++-........ ..
T Consensus 39 ~Nr~llVEaLRsIaEILiwGDQnDssvFdFFlEkqml~yFl~Ilrq~st~~v~VQLLQTlnIlfeNirhEtslYyLlSNn 118 (864)
T KOG2219|consen 39 NNRKLLVEALRAIAEILIWGDQNDSSVFDFFLEKQMLGYFLRILRQKSTVTVCVQLLQTLNILFENIRHETSLYYLLSNN 118 (864)
T ss_pred cchhHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCceEeHHHHHHHHHHHHhccccceeeeeeccc
Confidence 46677777888888876 234556678888888899999996555556666677777777665422221111 22
Q ss_pred cHHH-HHhhhcCCChHHHHHHHHHHHHhccCCh-hHHHHHHhc--CChHHHHH---hcCCCCcchHHHHHHHH-hHhhc-
Q 015537 244 ALPA-LAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEA--GVFPRLAE---FLMHPSPSVLIPALRTV-GNIVT- 314 (405)
Q Consensus 244 ~l~~-L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~--~~l~~L~~---lL~~~~~~v~~~a~~~l-~nl~~- 314 (405)
.+.. ++.-+.-.|+++..+-+..|..++..-. ..+..+... .=+|..++ +..+++.-++ -|+++| -|+..
T Consensus 119 yVNsiI~hkFDfq~eEimaYYISFLktlS~KLN~hTihff~Nd~t~dFpLyvE~ikf~nh~EsMVR-iAVRtitLNVykV 197 (864)
T KOG2219|consen 119 YVNSIIVHKFDFQDEEIMAYYISFLKTLSGKLNKHTIHFFLNDHTNDFPLYVEAIKFFNHPESMVR-IAVRTITLNVYKV 197 (864)
T ss_pred ceeeeEEEeecCCcHHHHHHHHHHHHHhhcccCcceeEEeeccccccchhHHHHHHHhcChHHHHH-HHHHheeeeEEEe
Confidence 2222 2222333567777777766666653211 111111111 12333333 3344444444 455554 34443
Q ss_pred CChhhHHHHHhcCchHHHHHhh
Q 015537 315 GDDMQTQCVIEYQALPCLLNLL 336 (405)
Q Consensus 315 ~~~~~~~~~~~~g~l~~L~~ll 336 (405)
+++.....+++.-..|++-+++
T Consensus 198 ~d~Sml~yi~~~ta~eYfS~Li 219 (864)
T KOG2219|consen 198 QDESMLDYIRDKTATEYFSNLI 219 (864)
T ss_pred CCHHHHHHHhcCcchHHHHHHH
Confidence 3445555666665566655554
No 439
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=20.56 E-value=5.6e+02 Score=22.15 Aligned_cols=82 Identities=15% Similarity=0.057 Sum_probs=50.2
Q ss_pred HHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCch
Q 015537 263 ACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK 342 (405)
Q Consensus 263 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~ 342 (405)
-...|+.++. +....+.+-+.+++..+..+....+. -.-...+++++=.+.+..... .|-+.|.++ +.
T Consensus 143 Yf~~IG~lS~-~~~Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R~--------iLsKaLt~~-s~ 210 (226)
T PF14666_consen 143 YFLFIGVLSS-TPNGLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPRI--------ILSKALTSG-SE 210 (226)
T ss_pred HHHHHHHHhC-ChhHHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHHH--------HHHHHHhcC-CH
Confidence 3445666654 44556767777999999888876533 122223455553333333332 356777777 78
Q ss_pred hHHHHHHHHHHHHh
Q 015537 343 SIKKEACWTVSNIT 356 (405)
Q Consensus 343 ~v~~~a~~~L~nl~ 356 (405)
.+|..|.--|..+.
T Consensus 211 ~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 211 SIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHHHHHHHh
Confidence 89988887777654
No 440
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.31 E-value=5.6e+02 Score=27.82 Aligned_cols=130 Identities=12% Similarity=0.023 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC-C-ChhhhhccHHHH
Q 015537 171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-P-PFDQVSPALPAL 248 (405)
Q Consensus 171 ~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~-~~~~~~~~l~~L 248 (405)
-.++|+..|+..||-=+...|. .++....+..+-=.| .+.+.+|+..++.+|-.|...... . ...+....=..+
T Consensus 299 V~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtL-sDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RI 374 (1048)
T KOG2011|consen 299 VDPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTL-SDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRI 374 (1048)
T ss_pred CchHHHHHHHHHHHHHHHhccH---HHhcchHHHHhccee-ecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 3577777777777766655442 333332333333333 778999999999999999988522 2 223335555677
Q ss_pred Hhhh-cCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHh
Q 015537 249 AHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (405)
Q Consensus 249 ~~ll-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~ 310 (405)
+.+. ..-+..|+...+..+..+.... ++...=+..+..++.+.++.++..|...+.
T Consensus 375 VeMadrd~~~~Vrav~L~~~~~~~~~g------~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 375 VEMADRDRNVSVRAVGLVLCLLLSSSG------LLSDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred HHHHhhhcchhHHHHHHHHHHHHhccc------ccChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 8877 3345666666655544442111 111112345666666667777766666554
No 441
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.13 E-value=1.1e+03 Score=25.22 Aligned_cols=133 Identities=13% Similarity=0.166 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh----CCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHH
Q 015537 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALA 249 (405)
Q Consensus 174 ~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~----~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~ 249 (405)
...+.++..+-.++.+.... +...++.++.... ...++.+...+...+..++..-.+ .-......+|.|+
T Consensus 482 ~~tEaci~~~~sva~~~~~t-----~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e-~P~~ln~sl~~L~ 555 (982)
T KOG2022|consen 482 NRTEACIFQFQSVAEYLGET-----ESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGE-HPMYLNPSLPLLF 555 (982)
T ss_pred HHHHHHHHHHHHHHhhcCcc-----hhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhc-CCcccCchHHHHH
Confidence 44566666666666443221 1123555555542 223788899999888888876421 1234467889999
Q ss_pred hhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC--CCcchHHHHHHHHhHhhcC
Q 015537 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTG 315 (405)
Q Consensus 250 ~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~l~nl~~~ 315 (405)
+-++.+ +.-..+...|..+|....+.... .-.+++...-..+.. -.+..+...++.||.+.+.
T Consensus 556 ~~Lh~s--k~s~q~i~tl~tlC~~C~~~L~p-y~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~ 620 (982)
T KOG2022|consen 556 QGLHNS--KESEQAISTLKTLCETCPESLDP-YADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSR 620 (982)
T ss_pred HHhcCc--hHHHHHHHHHHHHHHhhhhhCch-HHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHh
Confidence 988643 44455666688888766554332 222444455555532 2456788899999998864
Done!