Query 015537
Match_columns 405
No_of_seqs 312 out of 2000
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 14:20:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 3.3E-63 1.1E-67 485.7 35.5 398 1-404 1-406 (529)
2 4b8j_A Importin subunit alpha- 100.0 7.9E-57 2.7E-61 441.5 37.0 398 1-404 3-400 (528)
3 1wa5_B Importin alpha subunit; 100.0 5.6E-53 1.9E-57 414.2 30.7 393 5-404 10-412 (530)
4 3ul1_B Importin subunit alpha- 100.0 4.8E-51 1.7E-55 397.4 35.7 369 29-404 14-387 (510)
5 2jdq_A Importin alpha-1 subuni 100.0 2.8E-39 9.5E-44 310.5 38.8 323 75-403 22-346 (450)
6 3ul1_B Importin subunit alpha- 100.0 4.5E-40 1.5E-44 320.1 28.6 322 73-403 100-429 (510)
7 3tpo_A Importin subunit alpha- 100.0 1E-39 3.4E-44 319.4 30.6 323 72-403 118-448 (529)
8 3now_A UNC-45 protein, SD10334 100.0 8.8E-40 3E-44 325.4 24.8 319 75-404 379-737 (810)
9 3nmz_A APC variant protein; pr 100.0 1.4E-39 4.8E-44 307.5 23.5 322 71-404 30-408 (458)
10 3nmz_A APC variant protein; pr 100.0 1.8E-38 6.3E-43 299.8 26.8 325 71-404 68-450 (458)
11 1xm9_A Plakophilin 1; armadill 100.0 8.5E-38 2.9E-42 299.7 29.2 320 74-404 3-449 (457)
12 2jdq_A Importin alpha-1 subuni 100.0 5.2E-37 1.8E-41 294.7 29.5 321 73-403 64-389 (450)
13 4b8j_A Importin subunit alpha- 100.0 1.2E-36 4.1E-41 298.2 29.9 321 73-403 117-442 (528)
14 1wa5_B Importin alpha subunit; 100.0 2.5E-36 8.7E-41 295.9 31.3 322 73-403 130-456 (530)
15 3l6x_A Catenin delta-1; cateni 100.0 5.2E-36 1.8E-40 289.1 28.5 323 73-404 48-476 (584)
16 3now_A UNC-45 protein, SD10334 100.0 1.6E-36 5.6E-41 301.9 25.7 324 73-402 421-780 (810)
17 3nmw_A APC variant protein; AR 100.0 6.3E-35 2.2E-39 268.0 18.9 275 87-364 46-341 (354)
18 1jdh_A Beta-catenin; beta-cate 100.0 1.8E-33 6E-38 275.7 29.0 317 73-401 101-423 (529)
19 3nmw_A APC variant protein; AR 100.0 5.6E-34 1.9E-38 261.7 23.2 266 131-404 46-334 (354)
20 1xm9_A Plakophilin 1; armadill 100.0 1.1E-33 3.7E-38 271.1 23.4 279 117-403 3-359 (457)
21 2z6h_A Catenin beta-1, beta-ca 100.0 9.6E-33 3.3E-37 276.5 29.3 317 73-401 98-420 (644)
22 3l6x_A Catenin delta-1; cateni 100.0 2.3E-32 7.9E-37 263.7 22.7 286 112-404 44-384 (584)
23 1jdh_A Beta-catenin; beta-cate 100.0 7.6E-32 2.6E-36 264.1 24.6 322 73-404 59-385 (529)
24 2z6g_A B-catenin; FULL-length, 100.0 7.6E-31 2.6E-35 266.9 30.4 317 73-401 234-556 (780)
25 4hxt_A De novo protein OR329; 100.0 1.6E-30 5.6E-35 229.6 24.6 240 116-358 2-242 (252)
26 2z6h_A Catenin beta-1, beta-ca 100.0 1.3E-30 4.5E-35 261.0 26.8 321 73-403 56-381 (644)
27 4db8_A Armadillo-repeat protei 100.0 1.5E-30 5.2E-35 230.1 21.4 239 116-357 12-251 (252)
28 2z6g_A B-catenin; FULL-length, 100.0 3.1E-30 1E-34 262.5 24.9 322 73-404 192-518 (780)
29 4hxt_A De novo protein OR329; 100.0 6.6E-30 2.3E-34 225.7 23.7 239 159-404 2-241 (252)
30 4db8_A Armadillo-repeat protei 100.0 1.1E-29 3.7E-34 224.6 20.7 239 73-314 12-251 (252)
31 4db6_A Armadillo repeat protei 99.9 3E-25 1E-29 190.4 23.8 201 113-357 9-209 (210)
32 4db6_A Armadillo repeat protei 99.9 2.6E-25 8.9E-30 190.8 20.1 199 199-404 10-209 (210)
33 3opb_A SWI5-dependent HO expre 99.9 6.5E-25 2.2E-29 214.7 22.3 323 74-404 335-728 (778)
34 1xqr_A HSPBP1 protein; armadil 99.9 6.7E-25 2.3E-29 196.2 20.4 188 131-319 54-243 (296)
35 1xqr_A HSPBP1 protein; armadil 99.9 5E-23 1.7E-27 184.1 19.1 201 73-277 28-243 (296)
36 3tt9_A Plakophilin-2; cell adh 99.9 3.6E-23 1.2E-27 177.2 15.2 197 117-315 9-230 (233)
37 3tt9_A Plakophilin-2; cell adh 99.9 1.1E-22 3.6E-27 174.3 13.4 196 74-273 9-230 (233)
38 3opb_A SWI5-dependent HO expre 99.9 7.4E-22 2.5E-26 193.3 19.9 307 74-385 377-762 (778)
39 4fdd_A Transportin-1; heat rep 99.8 5.9E-19 2E-23 182.3 14.3 314 74-403 129-470 (852)
40 3grl_A General vesicular trans 99.8 9.1E-17 3.1E-21 153.5 25.7 325 73-403 21-393 (651)
41 1oyz_A Hypothetical protein YI 99.8 2.7E-16 9.1E-21 140.7 25.4 256 73-401 23-279 (280)
42 1oyz_A Hypothetical protein YI 99.8 6.4E-17 2.2E-21 144.8 19.9 229 113-402 20-248 (280)
43 4fdd_A Transportin-1; heat rep 99.7 5.1E-17 1.7E-21 167.8 18.8 308 75-403 92-428 (852)
44 3grl_A General vesicular trans 99.7 1.7E-15 5.8E-20 144.8 24.3 294 73-367 60-404 (651)
45 2vgl_B AP-2 complex subunit be 99.7 8.4E-16 2.9E-20 151.9 14.0 224 75-317 88-314 (591)
46 2vgl_B AP-2 complex subunit be 99.6 1.3E-14 4.4E-19 143.4 21.3 295 75-404 123-457 (591)
47 1ibr_B P95, importin beta-1 su 99.6 1.9E-15 6.6E-20 144.8 13.4 308 76-403 93-436 (462)
48 1b3u_A Protein (protein phosph 99.6 1.1E-14 3.7E-19 144.0 18.9 302 75-402 283-585 (588)
49 1b3u_A Protein (protein phosph 99.6 3.5E-14 1.2E-18 140.3 22.5 303 74-403 88-391 (588)
50 1qgr_A Protein (importin beta 99.6 1.2E-14 4.2E-19 150.4 18.5 316 74-403 129-478 (876)
51 3ltm_A Alpha-REP4; protein eng 99.6 4.5E-14 1.6E-18 120.6 18.2 187 115-358 18-204 (211)
52 3ltj_A Alpharep-4; protein eng 99.6 5.2E-14 1.8E-18 119.2 17.3 185 115-356 13-197 (201)
53 1w63_A Adapter-related protein 99.6 1.1E-13 3.6E-18 137.4 21.6 293 73-404 70-414 (618)
54 1ibr_B P95, importin beta-1 su 99.6 8.6E-14 2.9E-18 133.3 18.6 278 73-358 128-438 (462)
55 3ltm_A Alpha-REP4; protein eng 99.6 1.9E-13 6.7E-18 116.6 18.4 188 73-317 19-206 (211)
56 3ltj_A Alpharep-4; protein eng 99.6 1.9E-13 6.6E-18 115.7 17.6 183 159-402 14-196 (201)
57 2bpt_A Importin beta-1 subunit 99.5 2.5E-13 8.6E-18 140.3 19.7 315 74-403 135-481 (861)
58 2bpt_A Importin beta-1 subunit 99.5 2.8E-13 9.5E-18 140.0 19.4 316 75-403 181-528 (861)
59 1qgr_A Protein (importin beta 99.5 8.1E-13 2.8E-17 136.8 19.3 308 76-403 93-436 (876)
60 1w63_A Adapter-related protein 99.5 3.3E-12 1.1E-16 126.6 21.1 255 74-357 108-414 (618)
61 1u6g_C TIP120 protein, CAND1; 99.4 1.7E-12 5.8E-17 139.2 15.2 272 74-358 7-285 (1230)
62 4gmo_A Putative uncharacterize 99.3 1.9E-11 6.3E-16 122.5 16.9 215 116-356 35-257 (684)
63 2vgl_A Adaptor protein complex 99.3 8.9E-10 3E-14 109.0 28.2 297 73-403 74-432 (621)
64 1u6g_C TIP120 protein, CAND1; 99.2 1.3E-10 4.4E-15 124.7 17.1 315 74-403 87-462 (1230)
65 4ady_A RPN2, 26S proteasome re 99.2 1.3E-09 4.6E-14 109.4 19.2 268 74-402 393-674 (963)
66 4gmo_A Putative uncharacterize 99.1 1E-10 3.5E-15 117.1 9.9 199 201-403 34-257 (684)
67 2vgl_A Adaptor protein complex 99.1 2.2E-09 7.5E-14 106.2 16.9 253 76-356 149-432 (621)
68 2db0_A 253AA long hypothetical 99.1 1.8E-08 6.1E-13 79.9 18.3 188 157-364 30-217 (253)
69 2db0_A 253AA long hypothetical 99.0 1.9E-07 6.4E-12 74.1 21.2 216 114-357 30-246 (253)
70 3tjz_B Coatomer subunit gamma; 98.9 1.2E-07 4E-12 86.0 18.9 251 74-364 69-323 (355)
71 2qk2_A LP04448P; mini spindles 98.9 2.5E-08 8.5E-13 86.7 13.6 185 76-272 18-205 (242)
72 2qk2_A LP04448P; mini spindles 98.9 7.3E-09 2.5E-13 90.1 10.1 184 119-314 18-205 (242)
73 4ady_A RPN2, 26S proteasome re 98.9 8.5E-07 2.9E-11 89.3 25.0 273 75-403 431-718 (963)
74 2qk1_A Protein STU2; STU2P, XM 98.8 2.4E-08 8.3E-13 86.9 11.8 191 120-314 20-220 (249)
75 3tjz_B Coatomer subunit gamma; 98.8 1.2E-07 4.2E-12 85.8 16.3 243 74-353 105-349 (355)
76 3b2a_A TON_1937, putative unch 98.8 1.4E-07 4.7E-12 78.1 14.9 186 116-316 33-220 (265)
77 3b2a_A TON_1937, putative unch 98.8 2.5E-07 8.6E-12 76.6 16.2 186 74-273 34-219 (265)
78 1te4_A Conserved protein MTH18 98.7 1.4E-09 4.7E-14 85.0 0.8 121 242-402 11-131 (131)
79 2qk1_A Protein STU2; STU2P, XM 98.7 1.7E-07 5.7E-12 81.6 13.4 194 163-357 20-220 (249)
80 1te4_A Conserved protein MTH18 98.7 2.3E-09 8E-14 83.6 -0.0 121 115-270 11-131 (131)
81 1ho8_A Vacuolar ATP synthase s 98.5 3.9E-06 1.3E-10 77.8 17.5 234 120-357 171-476 (480)
82 4hat_C Exportin-1; heat repeat 98.5 3.5E-05 1.2E-09 80.2 26.5 296 84-404 206-569 (1023)
83 1ho8_A Vacuolar ATP synthase s 98.5 2.1E-06 7.2E-11 79.6 15.3 233 78-314 172-476 (480)
84 2iw3_A Elongation factor 3A; a 98.4 2.9E-05 9.8E-10 79.3 21.6 299 73-401 14-321 (986)
85 3dad_A FH1/FH2 domain-containi 98.3 1.9E-05 6.5E-10 69.7 15.1 157 75-234 120-289 (339)
86 1wa5_C Importin alpha RE-expor 98.2 7.8E-05 2.7E-09 77.8 19.3 225 84-313 416-669 (960)
87 3ibv_A Exportin-T; karyopherin 98.2 3.3E-05 1.1E-09 80.2 16.1 303 84-403 204-565 (980)
88 2x1g_F Cadmus; transport prote 98.0 0.00021 7E-09 74.7 19.2 252 133-403 437-721 (971)
89 2x1g_F Cadmus; transport prote 98.0 0.00026 8.9E-09 74.0 19.2 291 88-403 204-571 (971)
90 2iw3_A Elongation factor 3A; a 98.0 0.0023 7.9E-08 65.5 24.7 264 74-356 55-323 (986)
91 3dad_A FH1/FH2 domain-containi 98.0 0.00032 1.1E-08 62.0 15.9 178 118-297 120-317 (339)
92 3m1i_C Exportin-1; heat repeat 98.0 0.0017 5.8E-08 68.4 24.6 297 85-404 207-569 (1049)
93 2x19_B Importin-13; nuclear tr 97.9 0.00044 1.5E-08 72.2 17.6 286 88-403 217-555 (963)
94 1wa5_C Importin alpha RE-expor 97.8 0.00078 2.7E-08 70.3 19.2 221 127-356 416-669 (960)
95 4ffb_C Protein STU2; tubulin f 97.8 0.00049 1.7E-08 60.6 14.5 191 73-272 10-212 (278)
96 3gjx_A Exportin-1; transport, 97.7 0.025 8.4E-07 59.0 26.7 293 84-404 218-595 (1073)
97 3oc3_A Helicase MOT1, MOT1; re 97.7 0.00019 6.5E-09 67.3 9.6 248 70-352 171-431 (800)
98 1upk_A MO25 protein; transfera 97.5 0.0029 9.8E-08 55.9 14.7 224 154-380 73-311 (341)
99 4hat_C Exportin-1; heat repeat 97.4 0.0002 7E-09 74.5 7.8 143 130-275 466-621 (1023)
100 2x19_B Importin-13; nuclear tr 97.4 0.0044 1.5E-07 64.6 17.8 219 126-356 459-713 (963)
101 3m1i_C Exportin-1; heat repeat 97.4 0.062 2.1E-06 56.5 26.5 320 74-403 139-528 (1049)
102 4ffb_C Protein STU2; tubulin f 97.4 0.0063 2.1E-07 53.4 15.5 189 118-314 12-212 (278)
103 2of3_A ZYG-9; multifunctional 97.3 0.0076 2.6E-07 52.0 14.2 199 163-380 50-258 (266)
104 1upk_A MO25 protein; transfera 97.2 0.028 9.6E-07 49.6 17.1 242 110-356 72-331 (341)
105 3ibv_A Exportin-T; karyopherin 97.2 0.015 5.2E-07 60.4 18.0 255 131-403 457-767 (980)
106 3oc3_A Helicase MOT1, MOT1; re 97.2 0.003 1E-07 59.5 11.1 215 117-356 175-403 (800)
107 2of3_A ZYG-9; multifunctional 97.1 0.0099 3.4E-07 51.3 13.5 179 121-314 51-236 (266)
108 1lrv_A LRV, leucine-rich repea 97.1 0.00055 1.9E-08 58.7 5.0 66 249-352 176-241 (244)
109 1lrv_A LRV, leucine-rich repea 96.9 0.001 3.5E-08 56.9 5.7 165 120-400 78-242 (244)
110 3l9t_A Putative uncharacterize 96.8 0.045 1.5E-06 45.8 13.9 144 118-283 73-218 (240)
111 2f31_A Diaphanous protein homo 96.7 0.054 1.8E-06 46.0 14.7 156 77-234 4-183 (233)
112 3l9t_A Putative uncharacterize 96.7 0.034 1.1E-06 46.6 12.8 142 205-369 74-219 (240)
113 3eg5_B Protein diaphanous homo 96.5 0.13 4.3E-06 47.2 16.8 158 76-235 69-250 (383)
114 3c2g_A SYS-1 protein; beta-cat 96.2 0.6 2E-05 41.4 22.0 324 76-402 9-401 (619)
115 2fv2_A RCD1 required for cell 96.0 0.051 1.7E-06 45.9 10.0 194 75-274 5-226 (268)
116 1lsh_A Lipovitellin (LV-1N, LV 96.0 0.49 1.7E-05 49.6 19.8 244 74-359 312-578 (1056)
117 3c2g_A SYS-1 protein; beta-cat 95.9 0.048 1.6E-06 48.1 9.5 231 140-382 265-536 (619)
118 3ebb_A Phospholipase A2-activa 95.9 0.48 1.6E-05 41.7 16.3 173 118-296 105-287 (304)
119 2bnx_A Diaphanous protein homo 95.8 0.3 1E-05 44.8 15.4 183 76-260 7-220 (386)
120 2fv2_A RCD1 required for cell 95.8 0.083 2.8E-06 44.6 10.4 140 91-232 74-225 (268)
121 3ebb_A Phospholipase A2-activa 95.7 0.1 3.5E-06 46.1 11.4 110 120-232 151-264 (304)
122 3u0r_A Apoptosis inhibitor 5; 95.6 0.067 2.3E-06 49.5 10.0 121 171-311 40-160 (507)
123 3gjx_A Exportin-1; transport, 95.6 2.8 9.5E-05 43.8 23.5 145 117-265 207-373 (1073)
124 1lsh_A Lipovitellin (LV-1N, LV 95.0 0.29 1E-05 51.3 13.9 134 243-403 391-542 (1056)
125 3fga_B Serine/threonine-protei 94.9 1.8 6.3E-05 39.4 17.1 235 152-401 122-363 (403)
126 3u0r_A Apoptosis inhibitor 5; 94.5 0.54 1.9E-05 43.6 12.5 119 131-269 42-160 (507)
127 2f31_A Diaphanous protein homo 93.9 2.6 8.8E-05 35.5 17.8 167 149-347 34-218 (233)
128 3gs3_A Symplekin, LD45768P; he 93.8 2.9 9.8E-05 35.7 20.9 102 75-187 17-118 (257)
129 2npp_B PP2A, B subunit, serine 93.7 3.6 0.00012 38.1 16.5 237 149-400 152-395 (449)
130 3eg5_B Protein diaphanous homo 93.5 4.4 0.00015 36.9 18.6 159 149-338 100-276 (383)
131 3o2t_A Symplekin; heat repeat, 93.2 4.8 0.00016 36.6 19.9 102 75-187 27-128 (386)
132 3a6p_A Exportin-5; exportin-5, 93.0 4.6 0.00016 43.0 18.4 259 75-356 13-330 (1204)
133 3a6p_A Exportin-5; exportin-5, 92.2 4 0.00014 43.5 16.6 220 123-367 19-288 (1204)
134 2p8q_B Snurportin-1; heat repe 91.6 0.16 5.4E-06 29.1 2.7 38 11-50 2-40 (40)
135 2npp_B PP2A, B subunit, serine 91.4 4.7 0.00016 37.4 14.0 226 75-318 164-403 (449)
136 3fga_B Serine/threonine-protei 89.6 3.1 0.00011 37.9 11.0 223 75-316 131-368 (403)
137 2jak_A Serine/threonine-protei 89.5 4.9 0.00017 36.5 12.1 193 153-353 168-363 (392)
138 2bnx_A Diaphanous protein homo 88.5 14 0.00049 33.5 18.9 165 149-345 38-220 (386)
139 2b6c_A Hypothetical protein EF 86.8 9.2 0.00032 31.7 11.6 135 212-369 65-200 (220)
140 1x5b_A Signal transducing adap 83.6 1.8 6.1E-05 34.2 5.3 74 73-146 52-125 (163)
141 3qml_C Protein SLS1, nucleotid 83.5 10 0.00036 32.9 10.4 149 244-401 23-186 (315)
142 3ldz_A STAM-1, signal transduc 82.8 1.5 5E-05 33.6 4.4 72 73-146 42-114 (140)
143 1mhq_A ADP-ribosylation factor 80.6 2.5 8.6E-05 32.7 5.1 74 73-146 38-116 (148)
144 3g2s_A C-terminal fragment of 80.0 3.1 0.00011 32.2 5.4 74 73-146 48-126 (149)
145 1x5b_A Signal transducing adap 79.4 4.6 0.00016 31.7 6.4 74 160-233 53-127 (163)
146 1vsy_5 Proteasome activator BL 78.8 3.5 0.00012 42.7 6.9 190 160-357 761-966 (997)
147 3qml_C Protein SLS1, nucleotid 78.5 15 0.00052 31.9 9.7 147 75-231 24-189 (315)
148 3zyq_A Hepatocyte growth facto 78.2 1.9 6.6E-05 36.0 4.0 74 73-146 45-118 (226)
149 3o2t_A Symplekin; heat repeat, 76.2 17 0.0006 32.9 9.9 157 200-363 62-262 (386)
150 1juq_A ADP-ribosylation factor 75.0 3.8 0.00013 32.5 4.7 74 73-146 50-128 (171)
151 2jak_A Serine/threonine-protei 73.5 14 0.00049 33.4 8.6 177 75-264 176-359 (392)
152 3jxy_A Alkylpurine DNA glycosy 73.4 39 0.0013 28.1 12.0 141 207-370 66-208 (232)
153 1dvp_A HRS, hepatocyte growth 72.7 3 0.0001 34.7 3.8 73 73-145 42-114 (220)
154 1vsy_5 Proteasome activator BL 72.5 0.82 2.8E-05 47.3 0.3 104 244-359 761-875 (997)
155 3zyq_A Hepatocyte growth facto 71.5 9.3 0.00032 31.8 6.5 74 160-233 46-120 (226)
156 3gae_A Protein DOA1; UFD3, CDC 70.8 18 0.00062 30.6 8.3 107 168-274 99-219 (253)
157 1dvp_A HRS, hepatocyte growth 67.5 9.2 0.00032 31.7 5.7 74 160-233 43-117 (220)
158 1mhq_A ADP-ribosylation factor 58.2 18 0.00063 27.7 5.4 74 160-233 39-118 (148)
159 3gs3_A Symplekin, LD45768P; he 57.9 86 0.0029 26.5 10.8 66 242-312 52-117 (257)
160 3gjx_B Snurportin-1; transport 57.2 2.8 9.7E-05 37.0 0.7 44 8-52 28-71 (365)
161 3pst_A Protein DOA1; protein d 57.0 74 0.0025 29.2 9.9 131 134-275 243-392 (425)
162 1elk_A Target of MYB1; superhe 55.7 19 0.00064 28.0 5.2 74 73-146 53-130 (157)
163 3ldz_A STAM-1, signal transduc 55.0 15 0.00053 27.8 4.5 72 242-313 41-113 (140)
164 2b6c_A Hypothetical protein EF 54.9 87 0.003 25.6 12.6 141 119-283 58-199 (220)
165 3l3f_X Protein DOA1, DOA1/UFD3 54.5 28 0.00096 31.2 6.7 130 134-274 180-328 (362)
166 1juq_A ADP-ribosylation factor 54.3 18 0.00063 28.5 4.9 74 160-233 51-130 (171)
167 3pst_A Protein DOA1; protein d 53.4 21 0.00071 32.8 5.7 107 84-195 273-396 (425)
168 4atg_A TAF6; transcription, TF 51.7 59 0.002 26.2 7.6 111 160-271 41-161 (196)
169 3g2s_A C-terminal fragment of 49.8 37 0.0013 26.0 5.9 72 242-313 47-125 (149)
170 3gae_A Protein DOA1; UFD3, CDC 47.2 22 0.00074 30.1 4.6 131 90-232 71-218 (253)
171 3l3f_X Protein DOA1, DOA1/UFD3 47.0 21 0.00072 32.0 4.6 106 84-194 210-332 (362)
172 1t06_A Hypothetical protein; s 45.8 24 0.00083 29.4 4.7 76 287-368 110-191 (235)
173 1vsy_4 Proteasome activator BL 43.5 1.2E+02 0.0042 30.5 10.0 119 151-271 332-454 (799)
174 1elk_A Target of MYB1; superhe 42.3 46 0.0016 25.7 5.5 73 160-232 54-131 (157)
175 2xpp_A IWS1, ECU08_0440; trans 42.0 79 0.0027 24.0 6.5 74 278-355 54-134 (145)
176 3jxy_A Alkylpurine DNA glycosy 40.3 1.5E+02 0.0053 24.3 11.5 140 120-284 65-207 (232)
177 2xpp_A IWS1, ECU08_0440; trans 35.9 1.4E+02 0.0049 22.6 8.4 76 318-400 52-132 (145)
178 3s4w_B Protein FACD2, fanconi 34.5 4.6E+02 0.016 28.1 15.1 261 72-347 241-539 (1323)
179 1a92_A Delta antigen; leucine 34.3 36 0.0012 20.1 2.6 19 24-42 11-29 (50)
180 3nfq_A Transcription factor IW 32.6 1.5E+02 0.0052 23.2 6.9 78 317-401 66-148 (170)
181 3vld_A DNA mismatch repair pro 32.0 3.2E+02 0.011 25.5 18.1 190 74-277 117-322 (500)
182 3nfq_A Transcription factor IW 28.4 2.1E+02 0.0073 22.3 7.2 78 276-357 67-151 (170)
183 4atg_A TAF6; transcription, TF 28.2 2.3E+02 0.0079 22.7 10.8 129 202-338 41-179 (196)
184 1vdy_A Hypothetical protein (R 28.2 1.5E+02 0.0051 22.3 6.0 68 117-188 50-130 (140)
185 3vld_A DNA mismatch repair pro 25.5 4.2E+02 0.014 24.7 19.0 143 75-232 75-226 (500)
186 1t06_A Hypothetical protein; s 22.1 3.3E+02 0.011 22.3 7.8 73 208-282 114-190 (235)
187 1sz9_A PCF11 protein; RNA poly 21.8 2.6E+02 0.0088 21.0 7.2 87 255-352 23-109 (144)
188 1sz9_A PCF11 protein; RNA poly 20.3 2.7E+02 0.0091 20.9 6.2 91 213-312 22-112 (144)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.3e-63 Score=485.66 Aligned_cols=398 Identities=45% Similarity=0.700 Sum_probs=317.8
Q ss_pred CCCCCCC-CchHhhhhcCC-CCCchHHhhhhhHHHHHHHHHhhhHHHHhhhhccccCCC-CCccCCCCCchhhhhcCHHH
Q 015537 1 MSLRPNS-KADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQ-PLANDVNAPGTAKKLENLPV 77 (405)
Q Consensus 1 ~~~~~~~-~~~~r~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 77 (405)
||.+++. .+++|+++||+ ++|++|+||||++++++|||+||+|+++|||+.....++ ..+..............++.
T Consensus 1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (529)
T 3tpo_A 1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED 80 (529)
T ss_dssp -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence 7886664 67899999998 999999999999999999999999999999987543322 12222111111122246899
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 015537 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID 157 (405)
Q Consensus 78 l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~ 157 (405)
+++.++|+|++.|+.|+..++++++.+++++++.+++.|++|.|+++|..++++.++.+|+|+|+|++.++++++..+++
T Consensus 81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~ 160 (529)
T 3tpo_A 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD 160 (529)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999889999999999999999999987666999999999999999999999999999
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC----chhHHHHHHHHHHHhhcCC
Q 015537 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 158 ~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~----~~~~~~~a~~~l~~l~~~~ 233 (405)
.|+||.|+.+|.++++.++++|+|+|+||+.+++.+++.+.+.|++++|+.++.... ...+++.++|++++++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999994332 2457899999999999987
Q ss_pred -CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537 234 -PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (405)
Q Consensus 234 -~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl 312 (405)
+........+++|.|+.++.+++++++.+++|+|++++.++.+..+.+++.|+++.|+.+|.++++.++.+++++|+|+
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 6666777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHH
Q 015537 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIY 392 (405)
Q Consensus 313 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr 392 (405)
+++++..+..+++.|+++.|+.++.++ ++.++++|+|+|+||+++++++++.+++.|++|.|+.+|.+.. +.+|
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-----~~v~ 394 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-----FKTQ 394 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-----HHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC-----HHHH
Confidence 999999999999999999999999998 9999999999999999999999999999999999999998763 4699
Q ss_pred HHHHHHHhhhcc
Q 015537 393 KLAIWLCLVTCC 404 (405)
Q Consensus 393 ~~A~~al~n~~~ 404 (405)
++|+|||+|+|+
T Consensus 395 ~~A~~aL~nl~~ 406 (529)
T 3tpo_A 395 KAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999999974
No 2
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=7.9e-57 Score=441.48 Aligned_cols=398 Identities=75% Similarity=1.146 Sum_probs=315.8
Q ss_pred CCCCCCCCchHhhhhcCCCCCchHHhhhhhHHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhhcCHHHHHH
Q 015537 1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVA 80 (405)
Q Consensus 1 ~~~~~~~~~~~r~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 80 (405)
|+++++.++++|+++||++++++|+|+||+++.++|||+||+|+++|||++....+...+. ..........+.+|.+++
T Consensus 3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~l~~lv~ 81 (528)
T 4b8j_A 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPA-SAATGVDKKLESLPAMIG 81 (528)
T ss_dssp ------------------------CCCCC-----------------CCCC-----------------------CHHHHHH
T ss_pred CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCccccccc-ccccchhhhHHHHHHHHH
Confidence 7888888899999999999999999999999999999999999999999974332221010 111111223467999999
Q ss_pred hhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCC
Q 015537 81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA 160 (405)
Q Consensus 81 ~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~ 160 (405)
.|.++++..+..|++.|+++++.+.+++...+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|+
T Consensus 82 ~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~ 161 (528)
T 4b8j_A 82 GVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 161 (528)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCc
Confidence 99999999999999999999988755889999999999999999998765899999999999999998999999999999
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhh
Q 015537 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (405)
Q Consensus 161 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 240 (405)
++.|+.+|.++++.+++.|+|+|+||+.+++.++..+...|++++|+.++..+.+..++..++|+|.+|+.+.+......
T Consensus 162 i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 241 (528)
T 4b8j_A 162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 241 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHH
Confidence 99999999999999999999999999999998999999999999999999777899999999999999999877777777
Q ss_pred hhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhH
Q 015537 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320 (405)
Q Consensus 241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~ 320 (405)
..+++|.|+.++.++++.++..++|+|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|+|++.+++...
T Consensus 242 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 321 (528)
T 4b8j_A 242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQT 321 (528)
T ss_dssp HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHH
Confidence 79999999999999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred HHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCL 400 (405)
Q Consensus 321 ~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~ 400 (405)
+.+++.|+++.|+.+|.++.++.++++|+|+|+|++.+++++++.+++.|++|.|+.+|.+. ++.+|++|+|+|+
T Consensus 322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-----~~~v~~~a~~aL~ 396 (528)
T 4b8j_A 322 QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-----EFDIKKEAAWAIS 396 (528)
T ss_dssp HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-----CHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-----CHHHHHHHHHHHH
Confidence 99999999999999999876789999999999999999999999999999999999999865 2479999999999
Q ss_pred hhcc
Q 015537 401 VTCC 404 (405)
Q Consensus 401 n~~~ 404 (405)
|++.
T Consensus 397 nl~~ 400 (528)
T 4b8j_A 397 NATS 400 (528)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9873
No 3
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=5.6e-53 Score=414.18 Aligned_cols=393 Identities=49% Similarity=0.737 Sum_probs=337.1
Q ss_pred CCCCchHhhhhcCC-C-CCchHHhhhhhHHHHHHHHHhhhHHHHhhhhcccc---CCCCCccC----CCCCchhhhhcCH
Q 015537 5 PNSKADSRRNKYKV-A-VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQ---NQQPLAND----VNAPGTAKKLENL 75 (405)
Q Consensus 5 ~~~~~~~r~~~~k~-~-~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~---~~~~~~~~----~~~~~~~~~~~~l 75 (405)
+..+++.|++.||+ + +|++|+||||+++.++|||+||++++.|||+.... .+..++.+ ..........+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 89 (530)
T 1wa5_B 10 SKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQEL 89 (530)
T ss_dssp --CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCH
T ss_pred CCCchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHH
Confidence 34467889999999 8 99999999999999999999999999999997542 11110100 0001000122569
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 015537 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (405)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~ 155 (405)
+.+++.|+++++..+..|+..|+++++.+.+++++.+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+
T Consensus 90 ~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~ 169 (530)
T 1wa5_B 90 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVV 169 (530)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999998876567788899999999999999987338999999999999999988999999
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-C
Q 015537 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-P 234 (405)
Q Consensus 156 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~ 234 (405)
++.|+++.|+.+|.++++.+++.|+|+|++|+.+++..++.+...|++++|+.++ .+.+..++..++|+|++|+.+. +
T Consensus 170 ~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~ 248 (530)
T 1wa5_B 170 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKP 248 (530)
T ss_dssp HHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999988999999999999999999 5588999999999999999987 6
Q ss_pred CCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~ 314 (405)
........+++|.|+.++.++|+.++..++|+|++++...++..+.+++.|+++.|+.+|.+.++.++..|+++|++++.
T Consensus 249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence 66677778999999999999999999999999999999888888889999999999999999999999999999999999
Q ss_pred CChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHH
Q 015537 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKL 394 (405)
Q Consensus 315 ~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~ 394 (405)
+++...+.+++.|+++.|+.+|.++ ++.++++|+|+|+|++.+++++++.+++.|++|.|+.+|.+. ++.+|++
T Consensus 329 ~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~v~~~ 402 (530)
T 1wa5_B 329 GNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-----EYKTKKE 402 (530)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-----CHHHHHH
T ss_pred CCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-----CHHHHHH
Confidence 9998888899999999999999999 999999999999999999999999999999999999999754 3479999
Q ss_pred HHHHHhhhcc
Q 015537 395 AIWLCLVTCC 404 (405)
Q Consensus 395 A~~al~n~~~ 404 (405)
|+|+|+|+|.
T Consensus 403 a~~aL~~l~~ 412 (530)
T 1wa5_B 403 ACWAISNASS 412 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999973
No 4
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4.8e-51 Score=397.37 Aligned_cols=369 Identities=45% Similarity=0.708 Sum_probs=305.9
Q ss_pred hhHHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhhcCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCc
Q 015537 29 REDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP 108 (405)
Q Consensus 29 r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~ 108 (405)
|....++.|+++++....+.++.....++....+.. ......-..++.+++.++|+|++.|+.|+..+|+++|.+++|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~pp 92 (510)
T 3ul1_B 14 RGSGMLETAAALFERNHMDSPDLGTDDDDLAMADIG-SNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP 92 (510)
T ss_dssp ----------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCC
T ss_pred CCcccHHHHHHHHHhhccCCccccCCccccchhhhc-cccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCch
Confidence 334456777777777777666554433322111111 1111111368999999999999999999999999999998999
Q ss_pred hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 015537 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG 188 (405)
Q Consensus 109 ~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~ 188 (405)
++.+++.|++|.|+++|+.++++.+|.+|+|+|+||++++++++..+++.|+||.|+.+|.+++++++++|+|+|+||+.
T Consensus 93 i~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999876668999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHhcCChHHHHHhhhCCC----chhHHHHHHHHHHHhhcCC-CCCChhhhhccHHHHHhhhcCCChHHHHHH
Q 015537 189 DSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDA 263 (405)
Q Consensus 189 ~~~~~~~~i~~~~~i~~L~~~l~~~~----~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a 263 (405)
+++.+++.+.+.|++++|+.++.... ...+++.++|++++++.+. +........+++|.|+.++.+++++++..+
T Consensus 173 d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A 252 (510)
T 3ul1_B 173 DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 252 (510)
T ss_dssp TCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred CCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999994322 2457899999999999987 666667778999999999999999999999
Q ss_pred HHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchh
Q 015537 264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS 343 (405)
Q Consensus 264 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~ 343 (405)
+|+|++|+.+..+..+.+.+.|+++.|+.+|.+++..++.+++++|+|++++++..+..+++.|+++.|+.++.++ ++.
T Consensus 253 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~ 331 (510)
T 3ul1_B 253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTN 331 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHH
T ss_pred HHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHH
Confidence 9999999999999889999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 344 IKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
++++|+|+|+||+++++++++.+++.|++|.|+.+|.+.+ +.+|++|+|||+|+++
T Consensus 332 v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-----~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 332 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-----FKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999998763 4699999999999875
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.8e-39 Score=310.52 Aligned_cols=323 Identities=56% Similarity=0.875 Sum_probs=299.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhc-CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
++.+++.++++++.++..|+..|+++++.+.+++.+.+++. |++|.|+++|++++++.++..|+++|++++.++++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 79999999999999999999999999875446777888888 99999999999883389999999999999998888888
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
.+++.|++|.|+.+|.++++.+++.++|+|++++.+.+..++.+.+.|+++.|+.++..+.+..++..++|+|.+++.+.
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999999999999999998899999999999999999955678999999999999999886
Q ss_pred -CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537 234 -PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (405)
Q Consensus 234 -~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl 312 (405)
+........+++|.|+.++.++|+.++..++|+|++++...++....+.+.|+++.|+.+|.++++.++..|+++|+++
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 6666666689999999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred hcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHH
Q 015537 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIY 392 (405)
Q Consensus 313 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr 392 (405)
+.+.+...+.+++.|+++.|+.++.++ ++.+++.|+|+|+|++.++++.++.+++.|++|.|+++|.+. ++.+|
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-----~~~v~ 335 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-----EFRTR 335 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-----CHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-----CHHHH
Confidence 999988888899999999999999998 999999999999999999999999999999999999999864 24799
Q ss_pred HHHHHHHhhhc
Q 015537 393 KLAIWLCLVTC 403 (405)
Q Consensus 393 ~~A~~al~n~~ 403 (405)
++|+|+|+|+|
T Consensus 336 ~~a~~~L~~l~ 346 (450)
T 2jdq_A 336 KEAAWAITNAT 346 (450)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999997
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4.5e-40 Score=320.10 Aligned_cols=322 Identities=24% Similarity=0.368 Sum_probs=289.9
Q ss_pred cCHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (405)
Q Consensus 73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~ 151 (405)
+.+|.|+++|++ +++.+|..|+++|.++++++ .+..+.+++.|++|.|+.+|.+++ +.++..|+|+|+||+.++++.
T Consensus 100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 679999999985 55899999999999998875 677788999999999999999988 999999999999999998999
Q ss_pred HHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHH
Q 015537 152 TKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l 226 (405)
+..+++.|+++.|+.+|.+++ ..+...++|+++|++.+...........++++.|+.++ .+.+++++..++|+|
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL 256 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 256 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 999999999999999998754 35788999999999987654555555567899999999 888999999999999
Q ss_pred HHhhcCCCCC-ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHH
Q 015537 227 SNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA 305 (405)
Q Consensus 227 ~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 305 (405)
++|+.+.+.. ......+++|.|+.++.++++.++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..|
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence 9999875322 223347899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcccc
Q 015537 306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIVAFFFMFLH 384 (405)
Q Consensus 306 ~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~lL~~~~~ 384 (405)
+|+|+|++.++..+...+++.|+++.|+.++.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+++|.+.+
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d- 414 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD- 414 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC-
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC-
Confidence 9999999999999999999999999999999999 99999999999999997 68899999999999999999997653
Q ss_pred cchhhhHHHHHHHHHhhhc
Q 015537 385 FFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 385 ~~~~~~vr~~A~~al~n~~ 403 (405)
++++..+.++|.|++
T Consensus 415 ----~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 415 ----TKIIQVILDAISNIF 429 (510)
T ss_dssp ----HHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHH
Confidence 469999999999976
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1e-39 Score=319.37 Aligned_cols=323 Identities=24% Similarity=0.362 Sum_probs=290.7
Q ss_pred hcCHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch
Q 015537 72 LENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (405)
Q Consensus 72 ~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~ 150 (405)
.+.+|.|+++|.+ +++.+|..|+++|.++++++ ......+++.|++|.|+.+|.+++ +.++..|+|+|+||+.++++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHH
Confidence 3679999999975 56899999999999998765 566778999999999999999998 99999999999999999899
Q ss_pred hHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHH
Q 015537 151 HTKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (405)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~ 225 (405)
.+..+++.|+++.|+.+|..++ ..+...++|+++|++.+...........++++.|+.++ .++++.++..++|+
T Consensus 196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~a 274 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA 274 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHH
Confidence 9999999999999999998754 45788999999999987655555555567899999999 88899999999999
Q ss_pred HHHhhcCCCCC-ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHH
Q 015537 226 LSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304 (405)
Q Consensus 226 l~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~ 304 (405)
|++++.+.+.. ......+++|.|+.++.++++.++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..
T Consensus 275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~ 354 (529)
T 3tpo_A 275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 354 (529)
T ss_dssp HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence 99999875322 22334799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhccc
Q 015537 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIVAFFFMFL 383 (405)
Q Consensus 305 a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~lL~~~~ 383 (405)
|+|+|+||+.+++.+...+++.|+++.|+.++.++ +..++++|+|+|+|++. ++++++..+++.|++++|+++|.+.+
T Consensus 355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d 433 (529)
T 3tpo_A 355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 433 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999 99999999999999987 68899999999999999999997653
Q ss_pred ccchhhhHHHHHHHHHhhhc
Q 015537 384 HFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 384 ~~~~~~~vr~~A~~al~n~~ 403 (405)
+.++..+.++|.|++
T Consensus 434 -----~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 434 -----TKIIQVILDAISNIF 448 (529)
T ss_dssp -----HHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHH
Confidence 469999999999875
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=8.8e-40 Score=325.36 Aligned_cols=319 Identities=14% Similarity=0.127 Sum_probs=275.8
Q ss_pred HHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCCCchHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch-
Q 015537 75 LPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE- 150 (405)
Q Consensus 75 l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~- 150 (405)
++.++++|.++ |++++..|++.|..+... .+....++ +.|++|.|+++|++++ +.+++.|+|+|+||+.++++
T Consensus 379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q 455 (810)
T 3now_A 379 AEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQ 455 (810)
T ss_dssp HHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhh
Confidence 67788899887 899999999999999532 33344455 6799999999999887 89999999999999986531
Q ss_pred ----------------------------hH---HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 015537 151 ----------------------------HT---KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS 199 (405)
Q Consensus 151 ----------------------------~~---~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~ 199 (405)
.+ +.+++.|++|.|+.+|.++++.++++|+|+|+||+++ +.+|..+++
T Consensus 456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~ 534 (810)
T 3now_A 456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQ 534 (810)
T ss_dssp CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHH
T ss_pred hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 12 6889999999999999999999999999999999976 459999999
Q ss_pred cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-CCCCh--hhhhccHHHHHhhhcCCC-hHHHHHHHHHHHHhccCCh
Q 015537 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF--DQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTN 275 (405)
Q Consensus 200 ~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~--~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~ 275 (405)
.|++++|+.+| .+.+...++.++|+|.+|+.+. |...+ ....+++|.|+.+|.++. ...+.+++|+|.||+..++
T Consensus 535 ~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d 613 (810)
T 3now_A 535 EGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE 613 (810)
T ss_dssp TTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred CCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH
Confidence 99999999999 6677889999999999999764 32211 123578999999998663 4455789999999999988
Q ss_pred hHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 015537 276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (405)
Q Consensus 276 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl 355 (405)
+..+.+++.|+++.|+.+|.++++.++.+|+++|+|++.+++.+...+...|.++.|+.++.++ +..++++|+|+|+|+
T Consensus 614 ~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanL 692 (810)
T 3now_A 614 SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAII 692 (810)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999998776555443479999999999998 999999999999999
Q ss_pred hcCCHHHHHHHHH-hCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 356 TAGNREQIQVIMH-VHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 356 ~~~~~~~~~~l~~-~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
+.+++.+++.+++ .|++|.|+++|.+.+ ..+|+.|+|+|+|+++
T Consensus 693 t~~s~~~~~~ii~~~g~I~~Lv~LL~s~d-----~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 693 TSVSVKCCEKILAIASWLDILHTLIANPS-----PAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHCHHHHHHHHTSTTHHHHHHHHHTCSS-----HHHHHHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHcCCHHHHHHHHCCCC-----HHHHHHHHHHHHHHHh
Confidence 9988999999998 999999999998753 4699999999999864
No 9
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=307.48 Aligned_cols=322 Identities=17% Similarity=0.150 Sum_probs=255.6
Q ss_pred hhcCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCch-HHHHhcCcHHHHHHHhcCCCC-----------HHHHHHHH
Q 015537 71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDY-----------PQLQFEAA 138 (405)
Q Consensus 71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~~~g~l~~Li~lL~~~~~-----------~~~~~~a~ 138 (405)
+++.++.++.++.+.|+.. .++++++.+.++++ ..+++.|++|.|+++|...+. ++++.+|+
T Consensus 30 ~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~ 103 (458)
T 3nmz_A 30 KVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS 103 (458)
T ss_dssp ---------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHH
Confidence 4567899999999888873 45555555545666 778999999999999997432 79999999
Q ss_pred HHHHHHhcCCchhHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCChhhH
Q 015537 139 WALTNIASGTSEHTKVVIDHGAV----------PIFVKLLYSPS--DD-----VRE-------QAVWALGNIAGDSPRCR 194 (405)
Q Consensus 139 ~~L~ni~~~~~~~~~~~~~~g~i----------~~L~~lL~~~~--~~-----i~~-------~a~~~L~nl~~~~~~~~ 194 (405)
|+|+||+.++++......+.|++ +.+++++.+.. .+ +++ +|+|+|+|++.+ +++|
T Consensus 104 ~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R 182 (458)
T 3nmz_A 104 AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHR 182 (458)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHH
Confidence 99999999999999998888888 77778787642 22 555 999999999766 7799
Q ss_pred HHHHhcCChHHHHHhhhC----------CCchhHHHHHHHHHHHhhcCCCCCChhh--hhccHHHHHhhhcCCChHHHHH
Q 015537 195 DLVLSQGGLVPLLAQLNG----------QPKLSMLRNATWTLSNFCRGKPQPPFDQ--VSPALPALAHLIHSNDDEVLTD 262 (405)
Q Consensus 195 ~~i~~~~~i~~L~~~l~~----------~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~l~~L~~ll~~~d~~v~~~ 262 (405)
+.+.+.|++++|+.+|.. ..++.+++.++|+|.|||.+++...... ..|++|.|+.+|.+++++++..
T Consensus 183 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~ 262 (458)
T 3nmz_A 183 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV 262 (458)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHH
Confidence 999999999999999941 2357899999999999999864333222 3577999999999999999999
Q ss_pred HHHHHHHhccC-ChhHHHHHHhcCChHHHHHhc-CCCCcchHHHHHHHHhHhhcCChhhHHHHH-hcCchHHHHHhhcCC
Q 015537 263 ACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLSGN 339 (405)
Q Consensus 263 a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~-~~g~l~~L~~ll~~~ 339 (405)
++|+|.+|+.. +++....+.+.|+++.|+.+| .+.++.++..|+.+|+|++.+++.....+. ..|+++.|+.+|.++
T Consensus 263 A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~ 342 (458)
T 3nmz_A 263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR 342 (458)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCC
Confidence 99999999985 566778899999999999975 667889999999999999986655445555 789999999999987
Q ss_pred Cch---hHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 340 YKK---SIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 340 ~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
.+. .+++.|+|+|.||+. +++++++.+++.|++|.|+.+|.+++ ..++++|+|+|+|+|.
T Consensus 343 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-----~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 343 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-----LTIVSNACGTLWNLSA 408 (458)
T ss_dssp CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-----HHHHHHHHHHHHHHHS
T ss_pred CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-----hHHHHHHHHHHHHHHc
Confidence 222 499999999999997 78999999999999999999998753 3599999999999984
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=299.85 Aligned_cols=325 Identities=17% Similarity=0.148 Sum_probs=273.8
Q ss_pred hhcCHHHHHHhhcCC------------ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcH----------HHHHHHhcCC
Q 015537 71 KLENLPVMVAGVWSN------------DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV----------PRFVEFLLRE 128 (405)
Q Consensus 71 ~~~~l~~l~~~l~s~------------~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l----------~~Li~lL~~~ 128 (405)
+.+.+|.|+++|+.. +++.+++|+++|.++++++ ....+...+.|++ +.+++++.+.
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 457899999999963 3699999999999999987 6666777777777 7778888765
Q ss_pred C-CHH-----HHH-------HHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHH
Q 015537 129 D-YPQ-----LQF-------EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALG 184 (405)
Q Consensus 129 ~-~~~-----~~~-------~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~ 184 (405)
. ..+ ++. +|+|+|+|++.+ +++|+.+++.|++++|+.+|.. .++.+++.|+|+|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~ 225 (458)
T 3nmz_A 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225 (458)
T ss_dssp SSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence 2 112 333 999999999777 9999999999999999999942 34779999999999
Q ss_pred HhhCCChhhHHHHHh-cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-C-CCChhhhhccHHHHHhhh-cCCChHHH
Q 015537 185 NIAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-P-QPPFDQVSPALPALAHLI-HSNDDEVL 260 (405)
Q Consensus 185 nl~~~~~~~~~~i~~-~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~-~~~~~~~~~~l~~L~~ll-~~~d~~v~ 260 (405)
||+.+++..+..+.. .|++++|+.+| .+++++++..++|+|.||+.+. + ........|++|.|+.+| .+.++.++
T Consensus 226 nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~ 304 (458)
T 3nmz_A 226 NLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304 (458)
T ss_dssp HHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred HHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence 999888777777754 55699999999 7889999999999999999852 2 222333479999999975 56789999
Q ss_pred HHHHHHHHHhccCChhHHHHHH-hcCChHHHHHhcCCCCc----chHHHHHHHHhHhhc---CChhhHHHHHhcCchHHH
Q 015537 261 TDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCL 332 (405)
Q Consensus 261 ~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~a~~~l~nl~~---~~~~~~~~~~~~g~l~~L 332 (405)
..++.+|.+|+.++++....+. ..|+++.|+.+|.+.++ .++..|+++|.|++. +++...+.+++.|+++.|
T Consensus 305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~L 384 (458)
T 3nmz_A 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 384 (458)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHH
Confidence 9999999999985555444555 78999999999987765 389999999999997 788889999999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 333 ~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
+.+|.++ +..++++|+|+|+|++.+++++++.+++.|++|.|+++|.+.+ +.+++.|+|||.|++.
T Consensus 385 v~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~-----~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 385 LQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-----KMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSS-----HHHHHHHHHHHHHHHT
T ss_pred HHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCC-----HHHHHHHHHHHHHHHc
Confidence 9999998 8999999999999999889999999999999999999997652 3699999999999874
No 11
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=8.5e-38 Score=299.67 Aligned_cols=320 Identities=18% Similarity=0.173 Sum_probs=268.0
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
.+|.++.+|.++++.+|..|+++|++++..+ .+....+++.|++|.|+++|++++ +.++..|+|+|+|++.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 5799999999999999999999999997542 344558999999999999999888 99999999999999998899999
Q ss_pred HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh--------CC-------Cchh
Q 015537 154 VVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------GQ-------PKLS 217 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~--------~~-------~~~~ 217 (405)
.+++.|++|.|+.+|. ++++++++.++|+|+||+.+ +..+..+.+ |++++|+.++. .. .++.
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 88999999999999999988 668888888 99999999993 11 3577
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhh-h-ccHHHHHhhhcC-----------------------------------------
Q 015537 218 MLRNATWTLSNFCRGKPQPPFDQV-S-PALPALAHLIHS----------------------------------------- 254 (405)
Q Consensus 218 ~~~~a~~~l~~l~~~~~~~~~~~~-~-~~l~~L~~ll~~----------------------------------------- 254 (405)
+++.++|+|+|||.+ +....... . |++|.|+.++++
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 888999999999986 32211222 2 666666655532
Q ss_pred ----------------------------------------------------------CChHHHHHHHHHHHHhccCChh
Q 015537 255 ----------------------------------------------------------NDDEVLTDACWALSYLSDGTND 276 (405)
Q Consensus 255 ----------------------------------------------------------~d~~v~~~a~~~l~~l~~~~~~ 276 (405)
.++.+++.++|+|++++.++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 2356777889999999976543
Q ss_pred H---H-HHHH-hcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC-----chhHHH
Q 015537 277 K---I-QAVI-EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-----KKSIKK 346 (405)
Q Consensus 277 ~---~-~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~-----~~~v~~ 346 (405)
. . +.++ +.|++|.|+.+|.+++.+++..|+++|+|++.+. ....++..|+++.|+.+|.++. +..+..
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~ 395 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence 2 2 3344 5799999999999999999999999999998743 4455677789999999999872 136888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 347 EACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 347 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
.++|+|+|+..+++++.+.+.+.|+++.|++++.+..+. .++++|+|.|.|+++
T Consensus 396 ~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~----~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 396 SACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP----KAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcH----HHHHHHHHHHHHHHc
Confidence 999999999998889899999999999999999877233 699999999999986
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=5.2e-37 Score=294.66 Aligned_cols=321 Identities=25% Similarity=0.334 Sum_probs=285.9
Q ss_pred cCHHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (405)
Q Consensus 73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~ 151 (405)
+.++.+++.|+++ ++.++..|+++|.++++.. .+....+++.|++|.|+++|++++ +.++..|+|+|++++..+++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 4589999999998 8999999999999998654 455667888999999999999987 999999999999999998889
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l 229 (405)
+..+++.|+++.|+.++.+ +++.++..++|+|++++.+. +..+..+ ..++++.|+.++ .+.++.++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999996 78999999999999999765 4332332 378999999999 778899999999999999
Q ss_pred hcCCCC-CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHH
Q 015537 230 CRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (405)
Q Consensus 230 ~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 308 (405)
+...+. .......+++|.|+.++.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 987522 2222336899999999999999999999999999999988888888999999999999999999999999999
Q ss_pred HhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcccccch
Q 015537 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIVAFFFMFLHFFF 387 (405)
Q Consensus 309 l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~lL~~~~~~~~ 387 (405)
|+|++.+++...+.+++.|+++.|+.++.++ ++.+|+.|+|+|+|++.+ ++++++.+++.|++|.|+++|...
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~----- 373 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM----- 373 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS-----
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC-----
Confidence 9999999988888899999999999999998 999999999999999974 788899999999999999999765
Q ss_pred hhhHHHHHHHHHhhhc
Q 015537 388 GAIIYKLAIWLCLVTC 403 (405)
Q Consensus 388 ~~~vr~~A~~al~n~~ 403 (405)
++.+|+.|.|+|.|++
T Consensus 374 ~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 374 DSKIVQVALNGLENIL 389 (450)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 2479999999999986
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.2e-36 Score=298.19 Aligned_cols=321 Identities=24% Similarity=0.330 Sum_probs=289.2
Q ss_pred cCHHHHHHhhcCCC-hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537 73 ENLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (405)
Q Consensus 73 ~~l~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~ 151 (405)
+.+|.|+++|.+++ +.++..|+++|.++.+.. ......+++.|++|.|+.+|.+++ +.++..|+|+|+|++.+++..
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 57999999999887 999999999999998754 556677889999999999999987 999999999999999988889
Q ss_pred HHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhh
Q 015537 152 TKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL-~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~ 230 (405)
+..+.+.|+++.|+.+| .++++.++..++|+|++++...+.. ......|+++.|+.++ .+.++.++..++|+|.+++
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 5679999999999999999876433 3344578999999999 7889999999999999999
Q ss_pred cCCCCC-ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC-CcchHHHHHHH
Q 015537 231 RGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRT 308 (405)
Q Consensus 231 ~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~ 308 (405)
.+.+.. ......+++|.|+.++.++++.++..++++|++++.+++...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 875322 2233368999999999999999999999999999998888888999999999999999988 89999999999
Q ss_pred HhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcccccch
Q 015537 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIVAFFFMFLHFFF 387 (405)
Q Consensus 309 l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~lL~~~~~~~~ 387 (405)
|+|++.+++.....+++.|+++.|+.++.++ ++.++++|+|+|+|++.+ +++....+++.|+++.|+.+|...+
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d---- 427 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPD---- 427 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC----
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCC----
Confidence 9999998888888999999999999999999 999999999999999985 8999999999999999999997742
Q ss_pred hhhHHHHHHHHHhhhc
Q 015537 388 GAIIYKLAIWLCLVTC 403 (405)
Q Consensus 388 ~~~vr~~A~~al~n~~ 403 (405)
+.++..|.++|.|+|
T Consensus 428 -~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 428 -IRIVTVCLEGLENIL 442 (528)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHH
Confidence 479999999999986
No 14
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.5e-36 Score=295.91 Aligned_cols=322 Identities=23% Similarity=0.322 Sum_probs=287.6
Q ss_pred cCHHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (405)
Q Consensus 73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~ 151 (405)
+.+|.|+++|.++ ++.++..|+++|.++++.. ......+++.|+++.|+.+|.+++ +.++..|+|+|++++..+++.
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence 6799999999997 8999999999999998654 455667888999999999999887 999999999999999988899
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
+..++..|+++.|+.++.++++.++..++|+|++|+.+...........++++.|+.++ .+.++.++..++|+|.+|+.
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999977522334555678999999999 77889999999999999998
Q ss_pred CCCCCC-hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHh
Q 015537 232 GKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (405)
Q Consensus 232 ~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~ 310 (405)
+.+... .....+++|.|+.++.+.++.++..++++|++++.+++...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 753222 2222589999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CH--HHHHHHHHhCcHHHHHHHHhcccccch
Q 015537 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NR--EQIQVIMHVHAFSIIVAFFFMFLHFFF 387 (405)
Q Consensus 311 nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~--~~~~~l~~~~~i~~L~~lL~~~~~~~~ 387 (405)
|++.+++...+.+++.|+++.|+.++.++ ++.++..|+|+|+|++.+ ++ ++.+.+++.|++|.|+.+|...
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~----- 440 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA----- 440 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC-----
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC-----
Confidence 99998888888899999999999999988 999999999999999974 55 7889999999999999999765
Q ss_pred hhhHHHHHHHHHhhhc
Q 015537 388 GAIIYKLAIWLCLVTC 403 (405)
Q Consensus 388 ~~~vr~~A~~al~n~~ 403 (405)
++.++..|.|+|.|++
T Consensus 441 ~~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 441 DNRIIEVTLDALENIL 456 (530)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 2479999999999986
No 15
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=5.2e-36 Score=289.12 Aligned_cols=323 Identities=17% Similarity=0.171 Sum_probs=264.7
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-Cchh
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG-TSEH 151 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~-~~~~ 151 (405)
..++.++++|.++++.+|..|+++|++++..+ .+....+++.|+||.|+++|.+++ +.++..|+|+|+||+.+ ++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence 47899999999999999999999999997654 677788999999999999999988 99999999999999996 6899
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh-----------------CC
Q 015537 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-----------------GQ 213 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~-----------------~~ 213 (405)
+..+++.|+||.|+.+|.+ .+..++++++++|+||+.. +..+..+.+ +++++|+.++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999997 6889999999999999985 457777775 57999999762 12
Q ss_pred CchhHHHHHHHHHHHhhcCCCC-CChhh----------------------------------------------------
Q 015537 214 PKLSMLRNATWTLSNFCRGKPQ-PPFDQ---------------------------------------------------- 240 (405)
Q Consensus 214 ~~~~~~~~a~~~l~~l~~~~~~-~~~~~---------------------------------------------------- 240 (405)
.++.++++++|+|.||+...+. .....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 3567788888888888765311 00000
Q ss_pred ----------------------hhccHHHHHhhhc-CCChHHHHHHHHHHHHhccCCh---hHHH-HHHhcCChHHHHHh
Q 015537 241 ----------------------VSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTN---DKIQ-AVIEAGVFPRLAEF 293 (405)
Q Consensus 241 ----------------------~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~---~~~~-~~~~~~~l~~L~~l 293 (405)
..++++.++.++. +.++.++++|+|+|.+|+.+.. ...+ .+.+.++++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 0123455666664 4568889999999999987652 1223 34456889999999
Q ss_pred cCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC-------chhHHHHHHHHHHHHhcCCHHHHHHH
Q 015537 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-------KKSIKKEACWTVSNITAGNREQIQVI 366 (405)
Q Consensus 294 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (405)
|.+++..++..|+++|+|++.+... +.++..|+++.|+.+|.++. ...+...|||+|+||+.+++++.+.+
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~~--~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I 441 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDARN--KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKL 441 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCChhH--HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999999986653 34568899999999999872 24688999999999999999999999
Q ss_pred HHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 367 MHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 367 ~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
++.|++|.|+.+|.+... .+.+++.|+|+|+|++.
T Consensus 442 ~~~g~I~~Lv~LL~s~~~---~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 442 RETQGIEKLVLINKSGNR---SEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHTTHHHHHHHHHTCSSS---CHHHHHHHHHHHHHHHT
T ss_pred HHCCChHHHHHHHhCCCC---ChHHHHHHHHHHHHHHc
Confidence 999999999999987521 34899999999999875
No 16
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-36 Score=301.94 Aligned_cols=324 Identities=12% Similarity=0.071 Sum_probs=274.9
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCC----------------------------c---hHHHHhcCcHHHH
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSP----------------------------P---IEEVIRSGVVPRF 121 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~----------------------------~---~~~~~~~g~l~~L 121 (405)
+.+|.|+++++++++.++..|+++|.++..+.+.. . ++.+++.|++|.|
T Consensus 421 g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~L 500 (810)
T 3now_A 421 ASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTAL 500 (810)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHH
Confidence 56999999999999999999999999998754111 0 2678899999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhH-HHHHh
Q 015537 122 VEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCR-DLVLS 199 (405)
Q Consensus 122 i~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~-~~i~~ 199 (405)
+.+|++++ +.++.+|+|+|+||+.+ ++++..+++.|++|+|+.+|.++++..++.|+|+|+|++.+. +... .....
T Consensus 501 V~LL~s~s-~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 501 CALAKTES-HNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp HHHHTCCC-HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred HHHHcCCC-HHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 99999988 99999999999999965 789999999999999999999999999999999999998643 3210 00012
Q ss_pred cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC-CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHH
Q 015537 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI 278 (405)
Q Consensus 200 ~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~ 278 (405)
.|++++|+.+|..+.+...+..++|+|.||+...+. .......+++|.|+.++.++++.++..|+++|++++.+++..
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~- 657 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI- 657 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH-
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH-
Confidence 468999999994333555567899999999998532 222333789999999999999999999999999999866544
Q ss_pred HHHHh-cCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHh-cCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537 279 QAVIE-AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (405)
Q Consensus 279 ~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~-~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (405)
..+++ .|.++.|+.++.+++..++..|+|+|+|++.+++.+.+.+++ .|+++.|+.++.++ +..+++.|+|+|+|++
T Consensus 658 ~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence 44555 699999999999999999999999999999988888888998 89999999999999 9999999999999999
Q ss_pred cCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537 357 AGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 357 ~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
.+++++...+.+.|++++|+++|...+.. .+++.+.|.-+|.|.
T Consensus 737 ~~s~e~~~~l~e~G~i~~L~~LL~~~d~~--~~~i~e~Al~aL~~l 780 (810)
T 3now_A 737 NAGEEIAKKLFETDIMELLSGLGQLPDDT--RAKAREVATQCLAAA 780 (810)
T ss_dssp TTCHHHHHHHHTSTHHHHHTTSCCCTTST--THHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHhCcccC--cHHHHHHHHHHHHHH
Confidence 98899999999999999999999764222 347888888888764
No 17
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=6.3e-35 Score=268.05 Aligned_cols=275 Identities=18% Similarity=0.162 Sum_probs=239.2
Q ss_pred hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC----------CCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 015537 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----------DYPQLQFEAAWALTNIASGTSEHTKVVI 156 (405)
Q Consensus 87 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~----------~~~~~~~~a~~~L~ni~~~~~~~~~~~~ 156 (405)
...+..|+++|.++. .+ .+..+.+++.|+++.|+.+|..+ .++.++..|+|+|.|++.+++..+..+.
T Consensus 46 ~~~~~~A~~aL~nls-~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 46 EHQICPAVCVLMKLS-FD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGTHHHHHHHHHHHH-TS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc-CC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 355568999999995 44 57788899999999999999521 1267999999999999998777887775
Q ss_pred hC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-
Q 015537 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK- 233 (405)
Q Consensus 157 ~~-g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~- 233 (405)
.. |+||.|+.+|.++++++++.++|+|+||+.. ++..+..+.+.|++++|+.+|..+.+..+++.++++|+||+...
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 54 6699999999999999999999999999985 67789999999999999998757778999999999999999854
Q ss_pred CCCChhh-hhccHHHHHhhhcCCCh----HHHHHHHHHHHHhcc---CChhHHHHHHhcCChHHHHHhcCCCCcchHHHH
Q 015537 234 PQPPFDQ-VSPALPALAHLIHSNDD----EVLTDACWALSYLSD---GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA 305 (405)
Q Consensus 234 ~~~~~~~-~~~~l~~L~~ll~~~d~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 305 (405)
....... ..|++|.|+.+|.+.++ +++..++|+|.+++. .+++..+.+.+.|+++.|+.+|.+++..++..|
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence 2222222 57999999999987654 599999999999997 677888889999999999999999999999999
Q ss_pred HHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 015537 306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (405)
Q Consensus 306 ~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (405)
+++|+|++.+++++.+.+++.|+++.|+.++.++ ++.+++.|+|+|.||+.++++..+
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHHHh
Confidence 9999999988899999999999999999999998 999999999999999998776443
No 18
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.8e-33 Score=275.72 Aligned_cols=317 Identities=17% Similarity=0.193 Sum_probs=270.5
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
+.+|.+++.++++++.++..|+++|.+++..+ ......+.+.|++|.|+++|.+++ +.++..++.+|.+++.++++.+
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 67999999999999999999999999998764 455667789999999999999987 8999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 153 KVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
..+.+.|+++.|+.+|+++ ....+..+..+|.|++.. +..+..+.+.|+++.|+.++ .+.++.+++.++|+|.+|+.
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence 9999999999999999875 456788899999999964 45788889999999999999 66789999999999999999
Q ss_pred CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC--CCcchHHHHHHHH
Q 015537 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTV 309 (405)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~l 309 (405)
..+.. ....+++|.|+.++.+++++++..++|+|++++.++++....+.+.|+++.|+.+|.+ .++.++..|+++|
T Consensus 257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 86432 2346899999999999999999999999999999888888999999999999999965 3478999999999
Q ss_pred hHhhcCChh---hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccc
Q 015537 310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFF 386 (405)
Q Consensus 310 ~nl~~~~~~---~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~ 386 (405)
+|++.+++. ....+.+.|+++.|+.++.++.++.++++++|+|+|++.+... ...+++.|++|.|+++|.+.
T Consensus 335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~---- 409 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRA---- 409 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHH----
T ss_pred HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHH----
Confidence 999876543 3567889999999999999983469999999999999986555 47888999999999999864
Q ss_pred hhhhHHHHHHHHHhh
Q 015537 387 FGAIIYKLAIWLCLV 401 (405)
Q Consensus 387 ~~~~vr~~A~~al~n 401 (405)
++.+|++|+|+++|
T Consensus 410 -~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 410 -HQDTQRRTSMGGTQ 423 (529)
T ss_dssp -HHHHC---------
T ss_pred -hHHHHHHHhcccCc
Confidence 35799999999998
No 19
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=5.6e-34 Score=261.73 Aligned_cols=266 Identities=18% Similarity=0.153 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 015537 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALGNIAGDSPRCRDLVLS 199 (405)
Q Consensus 131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~ 199 (405)
...+..|+|+|+|++.+ +++|+.+++.|+++.|+.+|.+ .++.++..|+|+|.||+.+++..+..+..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566899999999998 8999999999999999999952 24789999999999999888777777754
Q ss_pred -cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-C-CCChhhhhccHHHHHhhh-cCCChHHHHHHHHHHHHhccCCh
Q 015537 200 -QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-P-QPPFDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTN 275 (405)
Q Consensus 200 -~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~-~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~ 275 (405)
.|++++|+.+| .+++++++..++|+|.||+.+. + ........|++|.|+.+| .+.+++++..++++|.+|+..++
T Consensus 125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 45699999999 7889999999999999999862 2 222333479999999974 66789999999999999998665
Q ss_pred hHHHHHH-hcCChHHHHHhcCCCCc----chHHHHHHHHhHhhc---CChhhHHHHHhcCchHHHHHhhcCCCchhHHHH
Q 015537 276 DKIQAVI-EAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE 347 (405)
Q Consensus 276 ~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~a~~~l~nl~~---~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~ 347 (405)
+....+. ..|+++.|+.+|.++++ .++..|+++|.|++. ++++.++.+++.|+++.|+.+|.++ +..++++
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 5555565 78999999999987665 489999999999997 7888889999999999999999998 9999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 348 ACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
|+|+|+|++.+++++++.+++.|++|.|+++|.+.. +.+|++|+|+|.|++.
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~-----~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-----KMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS-----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC-----HHHHHHHHHHHHHHHc
Confidence 999999999889999999999999999999997753 3699999999999975
No 20
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.1e-33 Score=271.15 Aligned_cols=279 Identities=19% Similarity=0.201 Sum_probs=237.9
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (405)
.+|.|+.+|++++ +.++..|+++|.+++.+++..+..+++.|++|.|+.+|+++++.++..|+|+|.||+.+++..+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4899999999998 899999999999999987888889999999999999999999999999999999999988889999
Q ss_pred HHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhc--------C--------CChHHH
Q 015537 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--------S--------NDDEVL 260 (405)
Q Consensus 197 i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~--------~--------~d~~v~ 260 (405)
+.+.|++++|+.+|..+.++++++.++|+|+||+.++ ........|++|.|+.++. + .++.+.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 9999999999999954889999999999999999983 3333333499999999993 2 356778
Q ss_pred HHHHHHHHHhccCChhHHHHHHhc-CChHHHHHhcCC------CCcchHHHHHHHHhHhhcC------------------
Q 015537 261 TDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTG------------------ 315 (405)
Q Consensus 261 ~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~l~nl~~~------------------ 315 (405)
..++|+|.+|+.. ++..+.+.+. |+++.|+.+|.+ .+..+...++.+|.|++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 7778888887 999999999975 4567888899999988631
Q ss_pred --------------------------------ChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH--
Q 015537 316 --------------------------------DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-- 361 (405)
Q Consensus 316 --------------------------------~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-- 361 (405)
.+...+.+++.|+++.|+.+|.++.++.+++.|+|+|+||++++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 1123445667788999999998876789999999999999986532
Q ss_pred -HH-HHHH-HhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 362 -QI-QVIM-HVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 362 -~~-~~l~-~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
++ +.++ +.|++|.|+++|.+++ ..++++|+|+|+|++
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~-----~~v~~~A~~aL~nls 359 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGN-----SDVVRSGASLLSNMS 359 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSC-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCC-----HhHHHHHHHHHHHHh
Confidence 23 4455 6899999999998763 369999999999986
No 21
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.6e-33 Score=276.45 Aligned_cols=317 Identities=17% Similarity=0.194 Sum_probs=271.6
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
+.++.|+++|+++++.++..|+++|.++++.. ......+.+.|+++.|+++|++++ +.++..++.+|.+++.++++.+
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence 56899999999999999999999999998765 566677889999999999999987 8888889999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 153 KVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
..+.+.|+++.|+.+|.+. ...+++.++.+|.|++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999975 467889999999999964 55788999999999999999 67789999999999999998
Q ss_pred CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC--CcchHHHHHHHH
Q 015537 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTV 309 (405)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l 309 (405)
..+. .....+++|.|+.++.+++++++..++|+|++|+.++++..+.+++.|+++.|+.+|.+. .+.++..|+++|
T Consensus 254 ~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 254 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 7533 234468999999999999999999999999999998888888899999999999999763 368999999999
Q ss_pred hHhhcCCh--hh-HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccc
Q 015537 310 GNIVTGDD--MQ-TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFF 386 (405)
Q Consensus 310 ~nl~~~~~--~~-~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~ 386 (405)
+|++.... .. ...+++.|+++.|+.+|.++.++.++++|+|+|+|++.+...+ +.+++.|++|.|+++|...
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~---- 406 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRA---- 406 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHH----
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhcc----
Confidence 99997543 23 3347889999999999998844799999999999998875554 8888999999999999865
Q ss_pred hhhhHHHHHHHHHhh
Q 015537 387 FGAIIYKLAIWLCLV 401 (405)
Q Consensus 387 ~~~~vr~~A~~al~n 401 (405)
++.+|++|+|+++|
T Consensus 407 -~~~vr~~a~~al~n 420 (644)
T 2z6h_A 407 -HQDTQRRTSMGGTQ 420 (644)
T ss_dssp -HHHHTTC-------
T ss_pred -chhhhhHhhhcccc
Confidence 23578888887776
No 22
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.3e-32 Score=263.72 Aligned_cols=286 Identities=18% Similarity=0.165 Sum_probs=238.5
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-C
Q 015537 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-S 190 (405)
Q Consensus 112 ~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~ 190 (405)
-...+.+|.|+++|.+++ +.++..|+++|.+++.++++++..+++.|+||.|+.+|.++++.+++.|+|+|.||+.+ +
T Consensus 44 ~~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~ 122 (584)
T 3l6x_A 44 NWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD 122 (584)
T ss_dssp CCCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC
T ss_pred CcccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC
Confidence 345678999999999988 99999999999999998899999999999999999999999999999999999999985 6
Q ss_pred hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhh------------------
Q 015537 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI------------------ 252 (405)
Q Consensus 191 ~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll------------------ 252 (405)
+.++..+.+.|++++|+.+|....+.++++.++++|++|+..+ ........+++|.|+.++
T Consensus 123 ~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~ 201 (584)
T 3l6x_A 123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201 (584)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhccccccccccccccccc
Confidence 8899999999999999999965678899999999999999863 344444467899999976
Q ss_pred cCCChHHHHHHHHHHHHhccCChhHHHHHHhc-CChHHHHHhcCC------CCcchHHHHHHHHhHhhcCChh-------
Q 015537 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGDDM------- 318 (405)
Q Consensus 253 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~l~nl~~~~~~------- 318 (405)
...|+.++..++++|.+|+..+++..+.+++. |+++.|+.+|.+ .+......|+++|.|++...+.
T Consensus 202 ~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~ 281 (584)
T 3l6x_A 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281 (584)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred ccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence 12368999999999999998887767778876 667899999864 4567889999999999965221
Q ss_pred ------------------hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC---HHHHHHHH-HhCcHHHHH
Q 015537 319 ------------------QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN---REQIQVIM-HVHAFSIIV 376 (405)
Q Consensus 319 ------------------~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~---~~~~~~l~-~~~~i~~L~ 376 (405)
..+.+++.++++.|+.+|.++.++.+++.|+|+|+||+++. +..++..+ +.|++|.|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv 361 (584)
T 3l6x_A 282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361 (584)
T ss_dssp --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence 11223344567888999975448999999999999999875 22334444 689999999
Q ss_pred HHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 377 AFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 377 ~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
++|.+... .+++.|+|||+|++.
T Consensus 362 ~LL~s~~~-----~v~~~A~~aL~nLs~ 384 (584)
T 3l6x_A 362 DLLTNEHE-----RVVKAASGALRNLAV 384 (584)
T ss_dssp HGGGCSCH-----HHHHHHHHHHHHHHT
T ss_pred HHHcCCCH-----HHHHHHHHHHHHHhC
Confidence 99987643 599999999999874
No 23
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=7.6e-32 Score=264.12 Aligned_cols=322 Identities=15% Similarity=0.165 Sum_probs=279.0
Q ss_pred cCHHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (405)
Q Consensus 73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~ 151 (405)
+.++.+++.|.++ ++.++..|+..|+++... .++...+.+.|++|.|+++|++++ +.++..|+++|++++.+++..
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 4689999999754 899999999999998543 346778889999999999999988 999999999999999987788
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
+..+.+.|++|.|+.+|.++++.++..++.+|.+++..++..+..+.+.|+++.|+.++....+......++.+|.+++.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88898999999999999999999999999999999998888999999999999999999766677888899999999997
Q ss_pred CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (405)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n 311 (405)
...........++++.|+.++.++++.++..++|+|.+++...+... ...|+++.|+.+|.+.++.++..++++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 64333333337899999999999999999999999999997654321 123789999999999999999999999999
Q ss_pred hhcCChhhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHH---HHHHHHHhCcHHHHHHHHhcccccch
Q 015537 312 IVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNRE---QIQVIMHVHAFSIIVAFFFMFLHFFF 387 (405)
Q Consensus 312 l~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~lL~~~~~~~~ 387 (405)
++.+++.....+.+.|+++.|+.++.+. .++.++..|+++|+|++.++++ ....+.+.|++|.|+++|.+..+
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~--- 369 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH--- 369 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCC---
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccc---
Confidence 9998888888999999999999999863 1479999999999999876433 35677899999999999987643
Q ss_pred hhhHHHHHHHHHhhhcc
Q 015537 388 GAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 388 ~~~vr~~A~~al~n~~~ 404 (405)
+.++++|+|+|+|++.
T Consensus 370 -~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 370 -WPLIKATVGLIRNLAL 385 (529)
T ss_dssp -HHHHHHHHHHHHHHTT
T ss_pred -hHHHHHHHHHHHHHhc
Confidence 3799999999999873
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=7.6e-31 Score=266.89 Aligned_cols=317 Identities=17% Similarity=0.195 Sum_probs=269.6
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
+.++.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|+.+|.+++ ..++..++.+|.+++.++++.+
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence 56899999999999999999999999998764 455666778999999999999877 8999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 153 KVVIDHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~-~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
..+.+.|+++.|+.+|++.+ ...++.++.+|.+++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence 99999999999999999864 45677899999999975 44778888999999999999 67788999999999999998
Q ss_pred CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC-CC-cchHHHHHHHH
Q 015537 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PS-PSVLIPALRTV 309 (405)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~-~~v~~~a~~~l 309 (405)
..+. .....++++.|+.++.+.++.++..++|+|++|+.++++....+++.|+++.|+.+|.+ .+ ..++..|+++|
T Consensus 390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8633 22346899999999999999999999999999999888888899999999999999975 33 38999999999
Q ss_pred hHhhcCChh---hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccc
Q 015537 310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFF 386 (405)
Q Consensus 310 ~nl~~~~~~---~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~ 386 (405)
+||+..+.. ....+.+.|+++.|+.+|.++.++.++++|+|+|+||+.+... ...+++.|++|.|+++|.+..
T Consensus 468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~i~~~g~i~~Lv~lL~~~~--- 543 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAH--- 543 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH-HHHHHHTTHHHHHHHHHHHHH---
T ss_pred HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH-HHHHHHCCCHHHHHHHHHhcc---
Confidence 999875543 2346788999999999999983459999999999999986554 478889999999999997642
Q ss_pred hhhhHHHHHHHHHhh
Q 015537 387 FGAIIYKLAIWLCLV 401 (405)
Q Consensus 387 ~~~~vr~~A~~al~n 401 (405)
+++|++|+|+++|
T Consensus 544 --~~~~~~aa~al~n 556 (780)
T 2z6g_A 544 --QDTQRRTSMGGTQ 556 (780)
T ss_dssp --HHHHHTTC-----
T ss_pred --hhHHHHHhhcccc
Confidence 3466666666665
No 25
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.98 E-value=1.6e-30 Score=229.60 Aligned_cols=240 Identities=28% Similarity=0.425 Sum_probs=223.3
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 015537 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (405)
Q Consensus 116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (405)
|.++.|+++|.+++ ++++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..++++|++++.+++..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 67999999999988 99999999999999999888999999999999999999999999999999999999999888999
Q ss_pred HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC-CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC
Q 015537 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (405)
Q Consensus 196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (405)
.+.+.|+++.++.++ .++++.++..++|+|.+++...+. .......++++.|+.++.++++.++..++++|++++..+
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 778999999999999999976432 222333689999999999999999999999999999988
Q ss_pred hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (405)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n 354 (405)
+...+.+.+.|+++.|+.+|.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.+++.|+|+|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999998888899999999999999999998 99999999999999
Q ss_pred HhcC
Q 015537 355 ITAG 358 (405)
Q Consensus 355 l~~~ 358 (405)
++..
T Consensus 239 l~~~ 242 (252)
T 4hxt_A 239 IKSG 242 (252)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9864
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.98 E-value=1.3e-30 Score=260.95 Aligned_cols=321 Identities=16% Similarity=0.166 Sum_probs=276.6
Q ss_pred cCHHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (405)
Q Consensus 73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~ 151 (405)
+.++.+++.|.++ ++.++..|+.+|+++... ......+.+.|+++.|+++|++++ +.++..|+++|.|++...+..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 3589999999875 899999999999988543 346777889999999999999988 999999999999999987788
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
+..+.+.|+++.|+.+|.++++.++..++.+|.+++..++..+..+.+.|+++.|+.++.......++..++.+|.+++.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999988888899999999999999999666677889999999999997
Q ss_pred CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (405)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n 311 (405)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6433333334789999999999999999999999999998765332 1123678999999999999999999999999
Q ss_pred hhcCChhhHHHHHhcCchHHHHHhhcCCCc-hhHHHHHHHHHHHHhcCCH--HHHH-HHHHhCcHHHHHHHHhcccccch
Q 015537 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYK-KSIKKEACWTVSNITAGNR--EQIQ-VIMHVHAFSIIVAFFFMFLHFFF 387 (405)
Q Consensus 312 l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~~--~~~~-~l~~~~~i~~L~~lL~~~~~~~~ 387 (405)
++.+++.....+.+.|+++.|+.++.+..+ +.++..|+++|+||+..++ +..+ .+++.|++|.|+++|.+..+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~--- 366 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH--- 366 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCC---
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCc---
Confidence 999888888889999999999999987423 7999999999999987433 2333 47789999999999987643
Q ss_pred hhhHHHHHHHHHhhhc
Q 015537 388 GAIIYKLAIWLCLVTC 403 (405)
Q Consensus 388 ~~~vr~~A~~al~n~~ 403 (405)
+.++++|+|+|+|++
T Consensus 367 -~~v~~~a~~~L~nLa 381 (644)
T 2z6h_A 367 -WPLIKATVGLIRNLA 381 (644)
T ss_dssp -HHHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHHHHc
Confidence 379999999999986
No 27
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=1.5e-30 Score=230.08 Aligned_cols=239 Identities=36% Similarity=0.551 Sum_probs=220.9
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 015537 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (405)
Q Consensus 116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (405)
...+.++..|.+++ ++++..|+++|.++...+++.+..+++.|+++.|+.+|.++++.++..++++|++++.+++..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45899999999998 89999999999887776678888999999999999999999999999999999999998888999
Q ss_pred HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCC-ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC
Q 015537 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (405)
Q Consensus 196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (405)
.+.+.|+++.|+.++ .++++.++..++|+|.+++.+.+.. ......+++|.|+.++.++++.++..++|+|++++..+
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6689999999999999999886433 33444789999999999999999999999999999988
Q ss_pred hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (405)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n 354 (405)
++....+++.|+++.|+.+|.++++.++..|+++|+|++.+++.....+++.|+++.|+.++.++ ++.+++.|+|+|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999998988899999999999999999998 99999999999999
Q ss_pred Hhc
Q 015537 355 ITA 357 (405)
Q Consensus 355 l~~ 357 (405)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 974
No 28
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.97 E-value=3.1e-30 Score=262.47 Aligned_cols=322 Identities=15% Similarity=0.168 Sum_probs=275.9
Q ss_pred cCHHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (405)
Q Consensus 73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~ 151 (405)
+.++.|++.|.++ ++.++..|+.+|+++.. . ..+...+.+.|+++.|+++|++++ +.++..|+++|.|++...++.
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~-~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSH-H-REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-S-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-C-chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 3588999999864 89999999999999754 3 345677888999999999999988 999999999999999988888
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
+..+.+.|+++.|+.+|.+++..++..++.+|.+++..++..+..+.+.|+++.|+.++...........++.+|.+|+.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 88999999999999999999999999999999999988888999999999999999999655566777889999999997
Q ss_pred CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (405)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n 311 (405)
...........++++.|+.++.+.++.++..++|+|.+++...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5433233334789999999999999999999999999999765432 1123678999999999999999999999999
Q ss_pred hhcCChhhHHHHHhcCchHHHHHhhcCCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHhCcHHHHHHHHhcccccch
Q 015537 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYK-KSIKKEACWTVSNITAGNRE---QIQVIMHVHAFSIIVAFFFMFLHFFF 387 (405)
Q Consensus 312 l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~lL~~~~~~~~ 387 (405)
++.+++.....+++.|+++.|+.+|.+..+ ..++..|+|+|+||+..+++ ....+.+.|++|.|+++|.+...
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~--- 502 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH--- 502 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCC---
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCCh---
Confidence 999988888899999999999999987423 48999999999999875443 23467789999999999987643
Q ss_pred hhhHHHHHHHHHhhhcc
Q 015537 388 GAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 388 ~~~vr~~A~~al~n~~~ 404 (405)
+.++++|+|+|+|++.
T Consensus 503 -~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 503 -WPLIKATVGLIRNLAL 518 (780)
T ss_dssp -HHHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHHHHHhc
Confidence 3799999999999873
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=6.6e-30 Score=225.72 Aligned_cols=239 Identities=23% Similarity=0.329 Sum_probs=220.0
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC-CCC
Q 015537 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPP 237 (405)
Q Consensus 159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~ 237 (405)
|.++.|+.+|.+++++++..++++|++++.+.+..+..+.+.|+++.|+.++ .+++..++..++|+|.+++...+ ...
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 6789999999999999999999999999999888889999999999999999 77889999999999999998753 233
Q ss_pred hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh
Q 015537 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (405)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 317 (405)
.....++++.|+.++.+++++++..++|+|++++..+++....+.+.|+++.|+.+|.++++.++..++++|+|++.+++
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 33347899999999999999999999999999998888888889999999999999999999999999999999999888
Q ss_pred hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHH
Q 015537 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIW 397 (405)
Q Consensus 318 ~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~ 397 (405)
.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.++++..+.+.+.|+++.|++++.+. ++.+|+.|+|
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-----~~~v~~~a~~ 234 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-----DSEVQKEAQR 234 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-----CHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-----cHHHHHHHHH
Confidence 8888899999999999999998 999999999999999999999999999999999999999764 2479999999
Q ss_pred HHhhhcc
Q 015537 398 LCLVTCC 404 (405)
Q Consensus 398 al~n~~~ 404 (405)
+|+|++.
T Consensus 235 ~L~~l~~ 241 (252)
T 4hxt_A 235 ALENIKS 241 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9999874
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=1.1e-29 Score=224.57 Aligned_cols=239 Identities=35% Similarity=0.567 Sum_probs=218.5
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
..++.++..|++++++++..|++.|+++++.. .+..+.+++.|+++.|+++|++++ +.++..|+++|++++.++++.+
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence 45799999999999999999999999988864 677888999999999999999988 9999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
..+++.|+++.|+.+|.++++.+++.++|+|+|++.+.+.....+.+.|+++.|+.++ .+++..++..++|+|.+++.+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999988875548888999999999999 778999999999999999987
Q ss_pred CCCCC-hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537 233 KPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (405)
Q Consensus 233 ~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n 311 (405)
.+... .....+++|.|+.++.++++.++..++++|++++..+++....+++.|+++.|+.++.++++.++..|+++|+|
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 53222 22337999999999999999999999999999998888888899999999999999999999999999999999
Q ss_pred hhc
Q 015537 312 IVT 314 (405)
Q Consensus 312 l~~ 314 (405)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 974
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.94 E-value=3e-25 Score=190.43 Aligned_cols=201 Identities=37% Similarity=0.550 Sum_probs=174.7
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 015537 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (405)
Q Consensus 113 ~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~ 192 (405)
...|+.+.|+.+|++++ +.++..|+|+|++++.++++.+..+++.|+++.|+.+|.++++.++..++|+|+|++.+++.
T Consensus 9 ~~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 34678999999999988 99999999999999988899999999999999999999999999999999999999988887
Q ss_pred hHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 015537 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (405)
Q Consensus 193 ~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (405)
.+..+.+.|+++.|+.+| . ++++.++..++|+|++++.
T Consensus 88 ~~~~i~~~g~i~~L~~lL-~-----------------------------------------~~~~~v~~~a~~~L~~l~~ 125 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLL-S-----------------------------------------SPNEQILQEALWALSNIAS 125 (210)
T ss_dssp HHHHHHHTTCHHHHHHHT-T-----------------------------------------CSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHH-c-----------------------------------------CCcHHHHHHHHHHHHHHHc
Confidence 878777777777777766 3 3455566666666666666
Q ss_pred CChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 015537 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (405)
Q Consensus 273 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L 352 (405)
++++....+++.|+++.|+.+|.++++.++..|+++|+|++.+++.....+.+.|+++.|+.++.++ ++.+++.|+|+|
T Consensus 126 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL 204 (210)
T 4db6_A 126 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEAL 204 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 6666667788899999999999999999999999999999998888888899999999999999998 999999999999
Q ss_pred HHHhc
Q 015537 353 SNITA 357 (405)
Q Consensus 353 ~nl~~ 357 (405)
.+++.
T Consensus 205 ~~l~~ 209 (210)
T 4db6_A 205 EKLQS 209 (210)
T ss_dssp HHHCC
T ss_pred HHHhc
Confidence 99974
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.94 E-value=2.6e-25 Score=190.80 Aligned_cols=199 Identities=34% Similarity=0.460 Sum_probs=178.6
Q ss_pred hcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCC-ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhH
Q 015537 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK 277 (405)
Q Consensus 199 ~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~ 277 (405)
..+..++|..++ +++++.++..++|+|.+++.+.+.. ......+++|.|+.+|.++++.++..++|+|++++.++++.
T Consensus 10 ~~~~~~~l~~LL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 456788888888 8889999999999999999775322 23334799999999999999999999999999999888888
Q ss_pred HHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 278 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
...+++.|+++.|+.+|.++++.++..|+++|+|++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 88999999999999999999999999999999999998888888899999999999999998 99999999999999999
Q ss_pred CCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 358 GNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 358 ~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
++++....+.+.|+++.|++++.+. ++.+|++|+|+|+|+|-
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHE-----NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCS-----CHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCC-----CHHHHHHHHHHHHHHhc
Confidence 8899899999999999999999764 24799999999999974
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.5e-25 Score=214.73 Aligned_cols=323 Identities=10% Similarity=0.104 Sum_probs=255.4
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHH-hcCcHHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCCch-
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIASGTSE- 150 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~l~~Li~lL~~-~~~~~~~~~a~~~L~ni~~~~~~- 150 (405)
..+.+.+.|.+++...+..|+..|..+. .. ....+.+. +.|+++.|+++++. .+ ..+.+.++.+|.|++...+.
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLS-l~-~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLS-LK-ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHT-TS-SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHh-CC-HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCccc
Confidence 3577778888877777999999999984 32 23334444 45779999999996 45 78999999999999985431
Q ss_pred -------------------------------------hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 015537 151 -------------------------------------HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193 (405)
Q Consensus 151 -------------------------------------~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~ 193 (405)
.+..+++.|++|.|+.++.++++.++++++|+|+||+.+ +..
T Consensus 412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~ 490 (778)
T 3opb_A 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNF 490 (778)
T ss_dssp CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGG
T ss_pred chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHH
Confidence 356678899999999999999999999999999999977 669
Q ss_pred HHHHHhcCChHHHHHhhhCCCch--hHHHHHHHHHHHhhcCC-CCCChh--hhhccHHHHHhhhcC-CCh----------
Q 015537 194 RDLVLSQGGLVPLLAQLNGQPKL--SMLRNATWTLSNFCRGK-PQPPFD--QVSPALPALAHLIHS-NDD---------- 257 (405)
Q Consensus 194 ~~~i~~~~~i~~L~~~l~~~~~~--~~~~~a~~~l~~l~~~~-~~~~~~--~~~~~l~~L~~ll~~-~d~---------- 257 (405)
|..+.+.|++++|+.++...... ..+..|+++|+++.... |...+. ...+++|.|+.+|.. ++.
T Consensus 491 R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~ 570 (778)
T 3opb_A 491 IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570 (778)
T ss_dssp HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence 99999999999999999554433 38999999999998653 222111 114899999999983 211
Q ss_pred ---HHHHHHHHHHHHhccCCh----hHHHHHHhc-CChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcC--
Q 015537 258 ---EVLTDACWALSYLSDGTN----DKIQAVIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ-- 327 (405)
Q Consensus 258 ---~v~~~a~~~l~~l~~~~~----~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g-- 327 (405)
--..+|+.+|.||+..++ +..+.++.. |+++.|..+|.+++..++..|+++++|++.+.+...+.+.+.+
T Consensus 571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~ 650 (778)
T 3opb_A 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENP 650 (778)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSH
T ss_pred ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCc
Confidence 126799999999998762 334667874 9999999999999999999999999999985553222333222
Q ss_pred ----chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHh-CcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537 328 ----ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV-HAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 328 ----~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
.++.|+.++.++ +..+|++|+|+|+|++.+++...+.+++. ++++.++.++....+ +..+|..+..++.|+
T Consensus 651 ~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~---~~~l~~R~~~~l~NL 726 (778)
T 3opb_A 651 QSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQID---DIELRQRLLMLFFGL 726 (778)
T ss_dssp HHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCC---CHHHHHHHHHHHHHH
Confidence 388999999998 99999999999999988888888888875 899999999987311 236999999999998
Q ss_pred cc
Q 015537 403 CC 404 (405)
Q Consensus 403 ~~ 404 (405)
-|
T Consensus 727 ~~ 728 (778)
T 3opb_A 727 FE 728 (778)
T ss_dssp HT
T ss_pred HH
Confidence 65
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.93 E-value=6.7e-25 Score=196.21 Aligned_cols=188 Identities=14% Similarity=0.144 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHh
Q 015537 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209 (405)
Q Consensus 131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~ 209 (405)
.+-+..|+..|.+++.. .++...+...|++|.|+. +|.++++.+++.|+|+|+|++.+++.+++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 46789999999999987 667888899999999999 9999999999999999999999999999999999999999999
Q ss_pred hhCCCchhHHHHHHHHHHHhhcCCCCCC-hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChH
Q 015537 210 LNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288 (405)
Q Consensus 210 l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 288 (405)
|..+++..+++.++|+|++++++.+... .....+++|.|+.+|+++++.++..++|+|++++.++++..+.+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 9656689999999999999999864322 223368999999999999999999999999999998888999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHhHhhcCChhh
Q 015537 289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (405)
Q Consensus 289 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 319 (405)
.|+.+|.+++..++..++++|+||+.+.+..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 9999999999999999999999999885533
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.91 E-value=5e-23 Score=184.09 Aligned_cols=201 Identities=15% Similarity=0.145 Sum_probs=173.3
Q ss_pred cCHHHHHHhhcCCC------------hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHH-HhcCCCCHHHHHHHHH
Q 015537 73 ENLPVMVAGVWSND------------SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVE-FLLREDYPQLQFEAAW 139 (405)
Q Consensus 73 ~~l~~l~~~l~s~~------------~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~-lL~~~~~~~~~~~a~~ 139 (405)
+.++..+..|.+++ .+.+..|+..|..++.. .+....+...|++|.|+. +|.+++ +.++..|+|
T Consensus 28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~--~dna~~~~~~G~l~~Lv~~lL~s~~-~~vr~~Aa~ 104 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN--MDNAADFCQLSGMHLLVGRYLEAGA-AGLRWRAAQ 104 (296)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHTTTTCSS-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC--hhhHHHHHHcCCHHHHHHHHHcCCC-HHHHHHHHH
Confidence 34677777777642 35778899999998743 345667889999999999 999988 999999999
Q ss_pred HHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhH
Q 015537 140 ALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM 218 (405)
Q Consensus 140 ~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~ 218 (405)
+|++++.+++..++.+++.|++|.|+.+|++ +++.++..|+|+|+|++.+.+...+.+.+.|+++.|+.+| ++++..+
T Consensus 105 ~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL-~~~d~~v 183 (296)
T 1xqr_A 105 LIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQKL 183 (296)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHHH
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH-cCCCHHH
Confidence 9999999999999999999999999999995 5889999999999999998887888888999999999999 6789999
Q ss_pred HHHHHHHHHHhhcCCCCCC-hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhH
Q 015537 219 LRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK 277 (405)
Q Consensus 219 ~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~ 277 (405)
+..++|+|++++.+.+... .....|++|.|+.+|.++|+.++..++++|++++...+..
T Consensus 184 ~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 184 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 9999999999998853332 2334899999999999999999999999999999875543
No 36
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=3.6e-23 Score=177.15 Aligned_cols=197 Identities=19% Similarity=0.149 Sum_probs=171.8
Q ss_pred cHHHHHHHhcCCCCH--HHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 015537 117 VVPRFVEFLLREDYP--QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~--~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 194 (405)
.+|.++++|.+++ + +++..|+++|.+++.++++.+..+.+.|+||.|+.+|.++++++++.|+|+|.||+.+++..+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 4899999999988 6 899999999999999889999999999999999999999999999999999999999888899
Q ss_pred HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhc----------------CCChH
Q 015537 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----------------SNDDE 258 (405)
Q Consensus 195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~----------------~~d~~ 258 (405)
..+.+.|++++|+.+|..+.+.++++.++.+|++|+..+. .......+++|.|+.++. ..+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 9999999999999999556789999999999999997643 233444678899888653 13679
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHhc-CChHHHHHhcCC------CCcchHHHHHHHHhHhhcC
Q 015537 259 VLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTG 315 (405)
Q Consensus 259 v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~l~nl~~~ 315 (405)
++.++.++|.+|+..+++..+.+.+. |+++.|+.+++. .+...++.|+.+|.|++..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998887777878876 678999999954 2567889999999999854
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=174.26 Aligned_cols=196 Identities=16% Similarity=0.191 Sum_probs=165.7
Q ss_pred CHHHHHHhhcCCCh--HHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537 74 NLPVMVAGVWSNDS--GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (405)
Q Consensus 74 ~l~~l~~~l~s~~~--~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~ 151 (405)
.+|.++++|.++++ ++|..|+..++++...+ .+....+++.|++|.|+++|++++ +++|+.|+|+|.|++.+++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 68999999999988 89999999999987554 567778999999999999999988 999999999999999988999
Q ss_pred HHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh----C-----------CCc
Q 015537 152 TKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----G-----------QPK 215 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~----~-----------~~~ 215 (405)
+..+.+.|+||.|+.+|. +++.+++++++.+|+||+.... .+..+.+ +++++|+.++. . ..+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccch
Confidence 999999999999999998 5789999999999999997654 6667766 46899988652 1 136
Q ss_pred hhHHHHHHHHHHHhhcCCCCC-Chhh-hhccHHHHHhhhcC------CChHHHHHHHHHHHHhccC
Q 015537 216 LSMLRNATWTLSNFCRGKPQP-PFDQ-VSPALPALAHLIHS------NDDEVLTDACWALSYLSDG 273 (405)
Q Consensus 216 ~~~~~~a~~~l~~l~~~~~~~-~~~~-~~~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~ 273 (405)
+.++++++++|.||+...+.. .... ..|+++.|+.+++. .|...+++++.+|.+|+..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 799999999999999865222 2222 25788999999875 2678999999999999864
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.88 E-value=7.4e-22 Score=193.28 Aligned_cols=307 Identities=11% Similarity=0.087 Sum_probs=242.2
Q ss_pred CHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCC-------------------C------------------chHHHHhc
Q 015537 74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERS-------------------P------------------PIEEVIRS 115 (405)
Q Consensus 74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~-------------------~------------------~~~~~~~~ 115 (405)
.++.|++.+++ ++..+...++.+|.|++...+. | ....+++.
T Consensus 377 ~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea 456 (778)
T 3opb_A 377 FTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT 456 (778)
T ss_dssp HHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC
Confidence 47889999985 7888999999999999764321 1 12346689
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHH---HHHHHHHHHHHhhCC-Ch
Q 015537 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD---VREQAVWALGNIAGD-SP 191 (405)
Q Consensus 116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~---i~~~a~~~L~nl~~~-~~ 191 (405)
|++|.|+.++++++ +.++..|+|+|.|++.. +++|..+++.|+++.|+.+|.+.... .+..|+++|++++.. +|
T Consensus 457 GvIp~Lv~Ll~S~s-~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np 534 (778)
T 3opb_A 457 ELISFLKREMHNLS-PNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP 534 (778)
T ss_dssp THHHHHHHHGGGSC-HHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred cCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence 99999999999988 99999999999999876 99999999999999999999986544 899999999999844 34
Q ss_pred hhHHHHH---hcCChHHHHHhhhCCCch-------------hHHHHHHHHHHHhhcCCCC----CChhhh--hccHHHHH
Q 015537 192 RCRDLVL---SQGGLVPLLAQLNGQPKL-------------SMLRNATWTLSNFCRGKPQ----PPFDQV--SPALPALA 249 (405)
Q Consensus 192 ~~~~~i~---~~~~i~~L~~~l~~~~~~-------------~~~~~a~~~l~~l~~~~~~----~~~~~~--~~~l~~L~ 249 (405)
.. .+- ..|++++|+.+|..++.. .-...++.+|.||+..+.+ .....+ .+++|.|.
T Consensus 535 ~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 535 GL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp HH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred HH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence 22 111 137899999999522221 1277999999999998521 112223 37999999
Q ss_pred hhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc------CChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHH
Q 015537 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA------GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCV 323 (405)
Q Consensus 250 ~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~------~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 323 (405)
.++.+++..++..|++++++|+.......+.+... +.++.|+.++.+++..++..|.++|+|++++.+.....+
T Consensus 613 ~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~l 692 (778)
T 3opb_A 613 NLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKEL 692 (778)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 99999999999999999999997544322234322 237889999999999999999999999988888888888
Q ss_pred Hhc-CchHHHHHhhcC--CCchhHHHHHHHHHHHHhc-----CCHHHHHHHH-HhCcHHHHHHHHhccccc
Q 015537 324 IEY-QALPCLLNLLSG--NYKKSIKKEACWTVSNITA-----GNREQIQVIM-HVHAFSIIVAFFFMFLHF 385 (405)
Q Consensus 324 ~~~-g~l~~L~~ll~~--~~~~~v~~~a~~~L~nl~~-----~~~~~~~~l~-~~~~i~~L~~lL~~~~~~ 385 (405)
++. ++++.++.++.. + ++.++..++.++.||+. ++.+.+..+. +......|..+|++.+..
T Consensus 693 l~~~~gi~~Ll~lL~~~~~-~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~ 762 (778)
T 3opb_A 693 LTKKELIENAIQVFADQID-DIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSG 762 (778)
T ss_dssp TTCHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSC
T ss_pred HHccccHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCch
Confidence 887 799999999999 7 99999999999999995 3334455666 677888889999877544
No 39
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.79 E-value=5.9e-19 Score=182.30 Aligned_cols=314 Identities=15% Similarity=0.124 Sum_probs=224.6
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHH-H---HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE-V---IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS 149 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~-~---~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~ 149 (405)
.++.+++.+.++++..+..|+.+|..++... .+.... . .-..+++.|++++++++ +.+|..|+++|.++....+
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDS-AEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH-TTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-HHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccc
Confidence 4788899999999999999999999887542 111110 0 01346788888888777 8999999999998887644
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (405)
Q Consensus 150 ~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l 229 (405)
......+ .++++.++.++.++++.++..++++|+.++...+..-...+. +.++.++..+ .+.++.++..+++++..+
T Consensus 207 ~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 207 QALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT-QDQDENVALEACEFWLTL 283 (852)
T ss_dssp HHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc-cCCcHHHHHHHHHHHHHH
Confidence 3211111 156788999999999999999999999999766543222122 3566777777 778899999999999999
Q ss_pred hcCCCCCC--hhhhhccHHHHHhhhc-----------C-----------CChHHHHHHHHHHHHhccCChhHHHHHHhcC
Q 015537 230 CRGKPQPP--FDQVSPALPALAHLIH-----------S-----------NDDEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (405)
Q Consensus 230 ~~~~~~~~--~~~~~~~l~~L~~ll~-----------~-----------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 285 (405)
++...... ......++|.++..+. + .+..++..+..++..++....+. ++ ..
T Consensus 284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~ 359 (852)
T 4fdd_A 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PH 359 (852)
T ss_dssp TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HH
Confidence 97631100 1123466777777762 2 12346788888888887543322 11 13
Q ss_pred ChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 015537 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQV 365 (405)
Q Consensus 286 ~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (405)
+++.+..++.++++.++..|++++|+++.+....... .-.++++.+...+.++ ++.||..|+|++++++...+.....
T Consensus 360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~ 437 (852)
T 4fdd_A 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPD 437 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHH
Confidence 5788888889999999999999999999887654432 2246899999999998 9999999999999998632221111
Q ss_pred HHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 366 IMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 366 l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
..-.++++.|+..|.+. ++.||..|+|+|+++|
T Consensus 438 ~~~~~ll~~L~~~L~d~-----~~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 438 TYLKPLMTELLKRILDS-----NKRVQEAACSAFATLE 470 (852)
T ss_dssp TTHHHHHHHHHHHHTCS-----SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHH
Confidence 11246777888877643 3579999999999997
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.77 E-value=9.1e-17 Score=153.54 Aligned_cols=325 Identities=16% Similarity=0.150 Sum_probs=250.6
Q ss_pred cCHHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCCch
Q 015537 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSE 150 (405)
Q Consensus 73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~-~~~~~~~~a~~~L~ni~~~~~~ 150 (405)
+.|+.|+.-+.+. -.+.+..|+..|+.+.. . ....+..++++.|+..|+.+ .+.++...++.+|.++...+++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk----~-y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSK----K-YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT----T-TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHH----H-hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 5689999988864 47999999999999842 1 22334466799999999865 3478888899999998775432
Q ss_pred -----------------hHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-hHHHHH-hcCChHHHHHhh
Q 015537 151 -----------------HTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVL-SQGGLVPLLAQL 210 (405)
Q Consensus 151 -----------------~~~~~~-~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~-~~~~i~-~~~~i~~L~~~l 210 (405)
..+.++ +.+.|+.|+.+|++.+..++..++.+|..|+...+. .++.+. ..++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 223343 457899999999999999999999999999988876 777777 458999999999
Q ss_pred hCCCchhHHHHHHHHHHHhhcCCCCCC-hhhhhccHHHHHhhhcCCC----hHHHHHHHHHHHHhccCChhHHHHHHhcC
Q 015537 211 NGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (405)
Q Consensus 211 ~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 285 (405)
.+..+.++..++..|.+|+.+++..+ ....+++++.|+.++.... ..+..+++.++.+|...+..+...+.+.|
T Consensus 176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 77789999999999999999974443 3444799999999997654 47899999999999999988888999999
Q ss_pred ChHHHHHhcCCCCcc------hHH---HHHHHHhHhhcCC------hhhHHHHHhcCchHHHHHhhcCCC-chhHHHHHH
Q 015537 286 VFPRLAEFLMHPSPS------VLI---PALRTVGNIVTGD------DMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEAC 349 (405)
Q Consensus 286 ~l~~L~~lL~~~~~~------v~~---~a~~~l~nl~~~~------~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~ 349 (405)
.++.|..+|..+++. ... .++.++.-++..+ ......+.+.|+++.|++++.++. ...++.+|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 999999999755332 222 3666677777652 234567889999999999988652 568999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-----cHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 350 WTVSNITAGNREQIQVIMHVH-----AFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 350 ~~L~nl~~~~~~~~~~l~~~~-----~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
.+++.++.+++...+.+.+.. ..|.++.+|-+..+.....++|-+|++++..++
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 999999999999777766543 235555543222222223589999998887664
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.76 E-value=2.7e-16 Score=140.72 Aligned_cols=256 Identities=14% Similarity=0.078 Sum_probs=201.5
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
..++.++..|.++++.++..|++.|.++.. .+.++.|+.+|.+++ +.++..|+++|+.+...... .
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~~-~ 88 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKC-E 88 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTT-H
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccccc-c
Confidence 468999999999999999999999998741 235899999999888 89999999999998653221 1
Q ss_pred HHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 153 KVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 153 ~~~~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
. .+++.|. .++.++++.++..++++|+++....+... ...++.|+..+ .++++.++..++++|.++..
T Consensus 89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITA-FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence 1 1334444 34677899999999999999974433221 23567888888 88999999999999998764
Q ss_pred CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (405)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n 311 (405)
. ..+|.|..++.++++.++..++++|+.+....+ .+++.|+.+|.++++.++..|+++|++
T Consensus 158 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 K----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2 478999999999999999999999999853332 245789999999999999999999999
Q ss_pred hhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhH
Q 015537 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAII 391 (405)
Q Consensus 312 l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~v 391 (405)
+. +...++.|..++.++ + ++..++++|+.+.. ..++|.|..++....+. .+
T Consensus 219 ~~-----------~~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~----~~ 269 (280)
T 1oyz_A 219 RK-----------DKRVLSVLCDELKKN-T--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDN----EI 269 (280)
T ss_dssp TT-----------CGGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCC----HH
T ss_pred hC-----------CHhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCc----HH
Confidence 85 235788899999876 3 89999999999843 26789999999776544 68
Q ss_pred HHHHHHHHhh
Q 015537 392 YKLAIWLCLV 401 (405)
Q Consensus 392 r~~A~~al~n 401 (405)
+.++..+|.+
T Consensus 270 ~~~~~~~l~~ 279 (280)
T 1oyz_A 270 ITSAIDKLKR 279 (280)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhc
Confidence 8888877653
No 42
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.75 E-value=6.4e-17 Score=144.79 Aligned_cols=229 Identities=14% Similarity=0.101 Sum_probs=183.6
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 015537 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (405)
Q Consensus 113 ~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~ 192 (405)
...+.++.|+..|.+++ +.++..|+++|+++.. .++++.|+.+|.++++.++..++++|+.+......
T Consensus 20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 35567999999999887 9999999999999863 14688999999999999999999999998744332
Q ss_pred hHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 015537 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (405)
Q Consensus 193 ~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (405)
... .++.|.+.+.+++++.++..++++|..+....+ ......++.|..++.++++.++..++++|+++..
T Consensus 88 ~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 88 EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred chH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 111 223344333478899999999999999985432 1224678899999999999999999999998753
Q ss_pred CChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 015537 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (405)
Q Consensus 273 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L 352 (405)
.+.++.|+.+|.++++.++..|+++|+.+....+ .+++.|..++.++ ++.+|..|+++|
T Consensus 158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL 216 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 2478999999999999999999999999853332 3567889999988 999999999999
Q ss_pred HHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537 353 SNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 353 ~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
+++. +...++.|+..|.+. +||..|.++|+++
T Consensus 217 ~~~~-----------~~~~~~~L~~~l~d~-------~vr~~a~~aL~~i 248 (280)
T 1oyz_A 217 SYRK-----------DKRVLSVLCDELKKN-------TVYDDIIEAAGEL 248 (280)
T ss_dssp HHTT-----------CGGGHHHHHHHHTSS-------SCCHHHHHHHHHH
T ss_pred HHhC-----------CHhhHHHHHHHhcCc-------cHHHHHHHHHHhc
Confidence 9985 346788899988653 4899999999875
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.74 E-value=5.1e-17 Score=167.83 Aligned_cols=308 Identities=13% Similarity=0.114 Sum_probs=226.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
-+.+++.+.++++.++..++.++..++..+.... -.++++.|++.+.+++ +.++..++.+|+.++...+.....
T Consensus 92 k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~-----wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~ 165 (852)
T 4fdd_A 92 KSECLNNIGDSSPLIRATVGILITTIASKGELQN-----WPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDS 165 (852)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTT-----CTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhch
Confidence 3566777888889999999999999987541111 2457999999999888 899999999999998864433211
Q ss_pred HH----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhh
Q 015537 155 VI----DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (405)
Q Consensus 155 ~~----~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~ 230 (405)
-. -..+++.++.++.++++.++..|+++|+++....+..-... -.+.++.+...+ .++++.++..++++|..++
T Consensus 166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLL 243 (852)
T ss_dssp CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 00 12467888888889999999999999999886544211110 113566777777 7889999999999999999
Q ss_pred cCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc---CChHHHHHhc-----------CC
Q 015537 231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFL-----------MH 296 (405)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL-----------~~ 296 (405)
...+......+.++++.+..++.+.++.++..+++.+..++..... ...+.. .+++.++..+ .+
T Consensus 244 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d 321 (852)
T 4fdd_A 244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD 321 (852)
T ss_dssp HHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred HhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence 8754333334567888888999999999999999999999865421 112221 3456666666 23
Q ss_pred -----------CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 015537 297 -----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQV 365 (405)
Q Consensus 297 -----------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (405)
.+..++..|..+|+.++...+.. ++ ..+++.+...+.++ ++.+|..|+|+|++++.+..+....
T Consensus 322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~ 396 (852)
T 4fdd_A 322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIP 396 (852)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGG
T ss_pred cccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHH
Confidence 23467899999999998643321 11 24678888889888 9999999999999999887765543
Q ss_pred HHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 366 IMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 366 l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
. -.+++|.++..+.+. ++.||..|+|+++++|
T Consensus 397 ~-l~~~l~~l~~~l~d~-----~~~Vr~~a~~~l~~l~ 428 (852)
T 4fdd_A 397 Y-LPELIPHLIQCLSDK-----KALVRSITCWTLSRYA 428 (852)
T ss_dssp G-HHHHHHHHHHHTTCS-----SHHHHHHHHHHHHHTH
T ss_pred H-HHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHHH
Confidence 2 356788888888543 3579999999999987
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.71 E-value=1.7e-15 Score=144.82 Aligned_cols=294 Identities=13% Similarity=0.186 Sum_probs=229.3
Q ss_pred cCHHHHHHhhcC--CChHHHHHHHHHHHHhhccCCCC----------------chHHHH-hcCcHHHHHHHhcCCCCHHH
Q 015537 73 ENLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSP----------------PIEEVI-RSGVVPRFVEFLLREDYPQL 133 (405)
Q Consensus 73 ~~l~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~----------------~~~~~~-~~g~l~~Li~lL~~~~~~~~ 133 (405)
.+++.++..|+. +|.++...++..|.++++.+..+ ..+.++ +.+.++.|+.+|+..+ -.+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v 138 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV 138 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence 478999999986 57888888999998887754221 112333 4678999999999888 899
Q ss_pred HHHHHHHHHHHhcCCch-hHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh
Q 015537 134 QFEAAWALTNIASGTSE-HTKVVIDH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211 (405)
Q Consensus 134 ~~~a~~~L~ni~~~~~~-~~~~~~~~-g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~ 211 (405)
+..++.+|..++...++ .++.+... ++++.|+.+|.++...++..++..|.+|+.+++..++.+.-.|+++.|++++.
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999998777 67777754 99999999999999999999999999999999999999998999999999995
Q ss_pred CCC---chhHHHHHHHHHHHhhcCCCCC-ChhhhhccHHHHHhhhcCCCh------HHHHH---HHHHHHHhccCC----
Q 015537 212 GQP---KLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDD------EVLTD---ACWALSYLSDGT---- 274 (405)
Q Consensus 212 ~~~---~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~------~v~~~---a~~~l~~l~~~~---- 274 (405)
... -..+...++.++.+|.++++.. ......+++|.|..++..+++ ....+ ++.++.-++..+
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 332 2467899999999999997433 333347899999999875432 13333 455555555442
Q ss_pred --hhHHHHHHhcCChHHHHHhcCCC--CcchHHHHHHHHhHhhcCChhhHHHHHhcC---------chHHHHHhhcCCCc
Q 015537 275 --NDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQ---------ALPCLLNLLSGNYK 341 (405)
Q Consensus 275 --~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g---------~l~~L~~ll~~~~~ 341 (405)
..+...+.+.|+++.++.++... ...++..|+.+++.+..+++...+.+.+.. ++..|+.++.+.+.
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 24556788999999999999765 567899999999999999987776665432 44445555666657
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015537 342 KSIKKEACWTVSNITAGNREQIQVIM 367 (405)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (405)
..+|-+|+.++..+..++++....++
T Consensus 379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~ 404 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLYKNQKGQGEIV 404 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 89999999999999998887544444
No 45
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.65 E-value=8.4e-16 Score=151.85 Aligned_cols=224 Identities=17% Similarity=0.135 Sum_probs=161.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
++.+.+.+.++|+.++..|+.++.++.. .+.. ..+++.+.++|.+++ +.+|..|+++++++...+++..
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~-----~~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~-- 156 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIRV---DKIT-----EYLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMV-- 156 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGH-----HHHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCH--
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHH-----HHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhc--
Confidence 4455555666677777777766666531 1111 224677899999887 9999999999999998766633
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 234 (405)
.+.++++.|..+|.++++.++..|+++|+.++.+++..+......+.+..|+..+ .+.++-.+..++.++..++...
T Consensus 157 -~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~- 233 (591)
T 2vgl_B 157 -EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD- 233 (591)
T ss_dssp -HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS-
T ss_pred -ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC-
Confidence 2346789999999999999999999999999987763210111123456677777 4567777777888887776332
Q ss_pred CCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC---ChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (405)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n 311 (405)
......+++.+..++++.++.|+..|++++.++... +++..+.+. ..+.+.|+.++. +++.++..|+.+|+.
T Consensus 234 ---~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~ 308 (591)
T 2vgl_B 234 ---DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINL 308 (591)
T ss_dssp ---HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHH
Confidence 233467888999999999999999999999999752 334444332 345677776664 788999999999999
Q ss_pred hhcCCh
Q 015537 312 IVTGDD 317 (405)
Q Consensus 312 l~~~~~ 317 (405)
++...+
T Consensus 309 i~~~~p 314 (591)
T 2vgl_B 309 IVQKRP 314 (591)
T ss_dssp HHHHCC
T ss_pred HHHhCh
Confidence 986443
No 46
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.64 E-value=1.3e-14 Score=143.38 Aligned_cols=295 Identities=14% Similarity=0.131 Sum_probs=213.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh---
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH--- 151 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~--- 151 (405)
++.+.+.+.+.++.++..|+.++.++.... .+. +.+.++++.+.++|.+++ +.++..|+++|+.++..+++.
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~---~~~~~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQM---VEDQGFLDSLRDLIADSN-PMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCC---HHHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhh---cccccHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhhCCCccch
Confidence 566888999999999999999999998654 222 223577899999999877 999999999999999876532
Q ss_pred ------HHHHHh----------------------------CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC---ChhhH
Q 015537 152 ------TKVVID----------------------------HGAVPIFVKLLYSPSDDVREQAVWALGNIAGD---SPRCR 194 (405)
Q Consensus 152 ------~~~~~~----------------------------~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~---~~~~~ 194 (405)
-..++. ..+++.+..++++.++.|+..|++++..+... ++...
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~ 277 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYY 277 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSH
T ss_pred hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHH
Confidence 111111 13456667777888999999999999998742 23222
Q ss_pred HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC
Q 015537 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (405)
Q Consensus 195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (405)
..+. ..+.++|+.++ . +++.++..++.+|..+....|...... +..+. .+.+++..++..+++.+..++...
T Consensus 278 ~~~~-~~~~~~L~~L~-~-~d~~vr~~aL~~l~~i~~~~p~~~~~~----~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~ 349 (591)
T 2vgl_B 278 NMLL-KKLAPPLVTLL-S-GEPEVQYVALRNINLIVQKRPEILKQE----IKVFF-VKYNDPIYVKLEKLDIMIRLASQA 349 (591)
T ss_dssp HHHH-HHTHHHHHHHT-T-SCHHHHHHHHHHHHHHHHHCCSTTTTC----TTTTS-CCTTSCHHHHHHHHHHHHHTCCSS
T ss_pred HHHH-HHHHHHHHHHh-c-CCccHHHHHHHHHHHHHHhChHHHHHH----HHhhe-eccCChHHHHHHHHHHHHHHCChh
Confidence 2222 23567777665 3 788999999999999998654332221 11112 222445889999999999987544
Q ss_pred hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (405)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n 354 (405)
. ++ .+++.|..++.+.+.+++..++++|+.++...+.... ..++.|+.++.+. ...++.++..++.+
T Consensus 350 n--v~-----~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~-~~~v~~e~i~~l~~ 416 (591)
T 2vgl_B 350 N--IA-----QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTK-VNYVVQEAIVVIRD 416 (591)
T ss_dssp T--HH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTC-CHHHHHHHHHHHHH
T ss_pred h--HH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHccc-chHHHHHHHHHHHH
Confidence 3 33 2457788888888999999999999999976653333 4678899999888 88888888888888
Q ss_pred HhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 355 ITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 355 l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
+....++. ...+++.|++.+.... ++.++..++|+||.+|-
T Consensus 417 ii~~~p~~-----~~~~v~~L~~~l~~~~----~~~~~~~~~wilGey~~ 457 (591)
T 2vgl_B 417 IFRKYPNK-----YESIIATLCENLDSLD----EPDARAAMIWIVGEYAE 457 (591)
T ss_dssp HHHHSCSS-----CCTTHHHHHHTTTTCC----SHHHHHHHHHHHHTTCT
T ss_pred HHHHCcch-----HHHHHHHHHHHHHhcc----CHHHHHHHHHHHHcccc
Confidence 87644432 2567788888776432 35789999999998863
No 47
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.63 E-value=1.9e-15 Score=144.79 Aligned_cols=308 Identities=13% Similarity=0.068 Sum_probs=212.7
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCC-chhH
Q 015537 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--DYPQLQFEAAWALTNIASGT-SEHT 152 (405)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~--~~~~~~~~a~~~L~ni~~~~-~~~~ 152 (405)
..+++.+.++++.+ ..++.++..++... .+ .. .-.+++|.|++.+.++ + +.++..|+.+|+.++... ++..
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~-~~-~~--~w~~ll~~L~~~l~~~~~~-~~~r~~al~~l~~l~~~~~~~~~ 166 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAE-IP-VN--QWPELIPQLVANVTNPNST-EHMKESTLEAIGYICQDIDPEQL 166 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHH-GG-GT--CCTTHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHHSCGGGT
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHh-cc-cc--ccHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHhCCchhh
Confidence 44666777766666 67777777776532 11 00 1246799999999887 6 899999999999998743 2221
Q ss_pred HHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhhHH-HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537 153 KVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~~~~~~-~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l 229 (405)
.... ..+++.++.++.++ ++.++..++++++++...-...-. .......++.+...+ .+.+..++..++++|..+
T Consensus 167 ~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~vr~~~~~~l~~l 244 (462)
T 1ibr_B 167 QDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKI 244 (462)
T ss_dssp GGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred HhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHH
Confidence 1111 14678889999887 799999999999998643221100 000111244444444 778899999999999999
Q ss_pred hcCCCCCChhhhh-ccHHHHHhhhcCCChHHHHHHHHHHHHhccCCh---------------------hHHHHHHhcCCh
Q 015537 230 CRGKPQPPFDQVS-PALPALAHLIHSNDDEVLTDACWALSYLSDGTN---------------------DKIQAVIEAGVF 287 (405)
Q Consensus 230 ~~~~~~~~~~~~~-~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~---------------------~~~~~~~~~~~l 287 (405)
+...+..-...+. .+++.++..+.+.++.++..+++.+..++.... ....... ..++
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 323 (462)
T 1ibr_B 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLV 323 (462)
T ss_dssp HHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhcc
Confidence 9875433333445 788888888888899999999999988875321 0111001 2356
Q ss_pred HHHHHhcCC-------CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 015537 288 PRLAEFLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (405)
Q Consensus 288 ~~L~~lL~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 360 (405)
|.++..+.. .++.++..|+.+|+.++..-.. .++ ..+++.+...+.++ ++.+|..|+++|+.++.+..
T Consensus 324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~ 398 (462)
T 1ibr_B 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPE 398 (462)
T ss_dssp HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSC
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCc
Confidence 667777743 3457899999999999865432 122 25678888888888 99999999999999987543
Q ss_pred -HHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 361 -EQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 361 -~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
+.....+ ..++|.++..|.+. ++.||..|+|+|+++|
T Consensus 399 ~~~~~~~l-~~~~~~l~~~l~d~-----~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 399 PSQLKPLV-IQAMPTLIELMKDP-----SVVVRDTAAWTVGRIC 436 (462)
T ss_dssp TTTTCTTT-TTHHHHHHHGGGCS-----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHH
Confidence 2222112 57888999988654 3579999999999987
No 48
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.63 E-value=1.1e-14 Score=144.00 Aligned_cols=302 Identities=11% Similarity=0.050 Sum_probs=221.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
++.+++.++.+++.++..|+..+..+...-............++|.+..++++++ +.++..++++|+.++..-...
T Consensus 283 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~~--- 358 (588)
T 1b3u_A 283 VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILGKD--- 358 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHCHH---
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhHh---
Confidence 5677777888888888888888888865431111111233567889999998888 899999999999987632111
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 234 (405)
.....++|.+..++.+++++++..++.+++.++..... +. .....++.+..++ .+.+..++..++.++..++...+
T Consensus 359 ~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~-~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~ 434 (588)
T 1b3u_A 359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQ-LSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQLG 434 (588)
T ss_dssp HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HH-HHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHcC
Confidence 11235789999999999999999999999998753221 11 1233567777777 77889999999999999986432
Q ss_pred CCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~ 314 (405)
.. .....++|.+..++.+++..++..++.+++.++...... .....++|.+..++.+++..++..++++++.++.
T Consensus 435 ~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~ 509 (588)
T 1b3u_A 435 VE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE 509 (588)
T ss_dssp GG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 11 122467899999999999999999999999987543221 1234678899998888899999999999999985
Q ss_pred CChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHH
Q 015537 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYK 393 (405)
Q Consensus 315 ~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~ 393 (405)
.-.. ...-..+++.|..++.++ ++.+|..++++|+.++.. .+. .....++|.|..++. +. +++||.
T Consensus 510 ~~~~---~~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~----~~~~~~~p~l~~l~~-d~----d~~vr~ 576 (588)
T 1b3u_A 510 VCGQ---DITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNS----TLQSEVKPILEKLTQ-DQ----DVDVKY 576 (588)
T ss_dssp HHHH---HHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHH----HHHHHHHHHHHHHTT-CS----SHHHHH
T ss_pred hcCH---HHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHhchh----hhHHHHHHHHHHHcC-CC----chhHHH
Confidence 3221 123346899999999998 999999999999999863 222 123456677777543 32 348999
Q ss_pred HHHHHHhhh
Q 015537 394 LAIWLCLVT 402 (405)
Q Consensus 394 ~A~~al~n~ 402 (405)
.|++|++.+
T Consensus 577 ~a~~al~~l 585 (588)
T 1b3u_A 577 FAQEALTVL 585 (588)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999865
No 49
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.62 E-value=3.5e-14 Score=140.31 Aligned_cols=303 Identities=14% Similarity=0.062 Sum_probs=221.7
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
-++.+...+.++++.++..|+..+.++.... +. ..+...++|.+..+..+++ +..|..|+.+++.++......
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~--~~--~~~~~~l~~~l~~l~~~~~-~~~R~~a~~~l~~~~~~~~~~-- 160 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEH--SP--SDLEAHFVPLVKRLAGGDW-FTSRTSACGLFSVCYPRVSSA-- 160 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTS--CH--HHHHHTHHHHHHHHHTCSS-HHHHHHHGGGHHHHTTTSCHH--
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHC--CH--HHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhcCHH--
Confidence 3566666667788999999999999997542 21 2233446777777777766 899999999999998764432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
....+++.+..++.++++.++..++.+|+.++...+. .......++.+..++ ++++..++..++.++..++...
T Consensus 161 --~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~ 234 (588)
T 1b3u_A 161 --VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLA-SDEQDSVRLLAVEACVNIAQLL 234 (588)
T ss_dssp --HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHH-TCSCHHHHTTHHHHHHHHHHHS
T ss_pred --HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhC
Confidence 1235688888999999999999999999999865432 112344677777777 7888999999999999998764
Q ss_pred CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhh
Q 015537 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (405)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 313 (405)
+. ......++|.+..++.++++.++..++.+++.++...... .....+++.++.++.++++.++..++.+++.++
T Consensus 235 ~~--~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 309 (588)
T 1b3u_A 235 PQ--EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE---ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC 309 (588)
T ss_dssp CH--HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH---HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CH--HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc---cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 32 2334568899999998889999999999999997542211 233467899999999999999999999999998
Q ss_pred cCChhh-HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHH
Q 015537 314 TGDDMQ-TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIY 392 (405)
Q Consensus 314 ~~~~~~-~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr 392 (405)
...... .....-..++|.+..++.++ ++.+|..++|+|+.++..-.. ......++|.+..++... ++.||
T Consensus 310 ~~~~~~~~~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~-----~~~Vr 380 (588)
T 1b3u_A 310 ENLSADCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDE-----CPEVR 380 (588)
T ss_dssp HTSCTTTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCS-----CHHHH
T ss_pred HHhChhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCC-----chHHH
Confidence 654321 11122346789999999988 999999999999999752111 111234677777777543 23577
Q ss_pred HHHHHHHhhhc
Q 015537 393 KLAIWLCLVTC 403 (405)
Q Consensus 393 ~~A~~al~n~~ 403 (405)
..|..+++.++
T Consensus 381 ~~a~~~l~~l~ 391 (588)
T 1b3u_A 381 LNIISNLDCVN 391 (588)
T ss_dssp HHHHTTCHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 50
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.61 E-value=1.2e-14 Score=150.43 Aligned_cols=316 Identities=16% Similarity=0.174 Sum_probs=219.1
Q ss_pred CHHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCch
Q 015537 74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSE 150 (405)
Q Consensus 74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-~~~~~~~a~~~L~ni~~~~~~ 150 (405)
.++.+++.+.++ ++.++..++.++..++..- .+..-.-.-..+++.+...+.+++ ++.++..|+.+|++++..-..
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-CHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 478888899888 8999999999999987532 111101112346778888888762 389999999999998764222
Q ss_pred hH-HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537 151 HT-KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (405)
Q Consensus 151 ~~-~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l 229 (405)
.. .......+++.+...+.+++++++..++.+|..++...+..-...+....++.++..+ .+.++.++..+++++..+
T Consensus 208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHH
Confidence 11 0011113577788888888999999999999999865443222222335667777766 777889999999999988
Q ss_pred hcCC----------------C---CCCh--hhhhccHHHHHhhhcC-------CChHHHHHHHHHHHHhccCChhHHHHH
Q 015537 230 CRGK----------------P---QPPF--DQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAV 281 (405)
Q Consensus 230 ~~~~----------------~---~~~~--~~~~~~l~~L~~ll~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~ 281 (405)
+... | .... .....++|.++..+.. ++..++..+..++..++....+. +
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~ 363 (876)
T 1qgr_A 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---G
T ss_pred HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---h
Confidence 7641 1 1111 1225667777777752 34678899999999887543321 1
Q ss_pred HhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 015537 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (405)
Q Consensus 282 ~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 360 (405)
+ ..+++.+...+.+.++.++..|++++|.++.+.. ......+ .++++.++..+.++ ++.+|..|+|+|++++...+
T Consensus 364 ~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCG
T ss_pred H-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCc
Confidence 1 2456777888888999999999999999998764 3333222 35899999999988 89999999999999986433
Q ss_pred HHH-HHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 361 EQI-QVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 361 ~~~-~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
... ..-.-..+++.|+..|.+. +.||..|+|+|+++|
T Consensus 441 ~~~~~~~~l~~~l~~l~~~l~~~------~~v~~~a~~al~~l~ 478 (876)
T 1qgr_A 441 EAAINDVYLAPLLQCLIEGLSAE------PRVASNVCWAFSSLA 478 (876)
T ss_dssp GGTSSTTTHHHHHHHHHHHTTSC------HHHHHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHH
Confidence 211 0000134566777777542 479999999999987
No 51
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.60 E-value=4.5e-14 Score=120.57 Aligned_cols=187 Identities=21% Similarity=0.180 Sum_probs=158.8
Q ss_pred cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 015537 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (405)
Q Consensus 115 ~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 194 (405)
.+.++.|+.+|.+++ +.++..|+++|+.+.. .++++.|+.+|.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 457999999999887 9999999999998754 2578999999999999999999999999852
Q ss_pred HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC
Q 015537 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (405)
Q Consensus 195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (405)
.+.++.|+..+ .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 23678888888 88899999999999999854 2578999999999999999999999999843
Q ss_pred hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (405)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n 354 (405)
...++.|..++.++++.++..++.+|+.+.. ...++.|..++.++ ++.+|..|.++|++
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 2357889999999999999999999999842 23577788999888 99999999999999
Q ss_pred HhcC
Q 015537 355 ITAG 358 (405)
Q Consensus 355 l~~~ 358 (405)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 9754
No 52
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.59 E-value=5.2e-14 Score=119.21 Aligned_cols=185 Identities=22% Similarity=0.201 Sum_probs=159.3
Q ss_pred cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 015537 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (405)
Q Consensus 115 ~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 194 (405)
.+..+.++++|.+++ +.++..|+++|+.+.. .+.++.|+.+|.++++.++..++++|+.+..
T Consensus 13 ~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred CcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 456899999999998 9999999999998754 2578999999999999999999999999842
Q ss_pred HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC
Q 015537 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (405)
Q Consensus 195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (405)
.+.++.|+..+ .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 75 -----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 75 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Confidence 23678888888 78899999999999999854 2578899999999999999999999999853
Q ss_pred hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (405)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n 354 (405)
.+.++.|..++.++++.++..|+++|+.+. .+ ..++.|..++.++ ++.+|..|.++|++
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETG-TGFARKVAVNYLET 195 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 246788999999999999999999999983 22 3577888899888 99999999999998
Q ss_pred Hh
Q 015537 355 IT 356 (405)
Q Consensus 355 l~ 356 (405)
+.
T Consensus 196 l~ 197 (201)
T 3ltj_A 196 HK 197 (201)
T ss_dssp CC
T ss_pred HH
Confidence 74
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.59 E-value=1.1e-13 Score=137.38 Aligned_cols=293 Identities=15% Similarity=0.101 Sum_probs=209.2
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
.....+++.+.+++...+.-+.-.+..++..+ + +..+ -+++.|.+-|++++ +.++..|+++|+++.. ++.
T Consensus 70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~--~--e~~~--l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~- 139 (618)
T 1w63_A 70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDER--Q--DVHL--LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEM- 139 (618)
T ss_dssp GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC--H--HHHH--HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHH-
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhCCC--c--HHHH--HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHH-
Confidence 35788899999999888888888888876422 1 1111 14778888888888 8999999999999974 332
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
. ..+++.+..+|.++++.++..|+.+++++....|+.. .+.++.+..++ .+.++.++..++++|..++..
T Consensus 140 ---~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 140 ---C-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp ---H-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCS
T ss_pred ---H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHh
Confidence 2 2567889999999999999999999999997666432 24677777777 788999999999999999876
Q ss_pred CCCCChhhhhccHHHHHhhhcC---------------CChHHHHHHHHHHHHhccCChhHHH-------HHH--------
Q 015537 233 KPQPPFDQVSPALPALAHLIHS---------------NDDEVLTDACWALSYLSDGTNDKIQ-------AVI-------- 282 (405)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~---------------~d~~v~~~a~~~l~~l~~~~~~~~~-------~~~-------- 282 (405)
.+.. ......++|.++.+|.. .++..+..++.+|+.++..+++... .+.
T Consensus 210 ~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 210 SPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKN 288 (618)
T ss_dssp HHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSST
T ss_pred ChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccc
Confidence 4321 22334566666665542 3677777777777777655432110 000
Q ss_pred --------------h--------cCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC
Q 015537 283 --------------E--------AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY 340 (405)
Q Consensus 283 --------------~--------~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~ 340 (405)
. ..+++.|..+|.+.++.++..|+.+|+.++...+.. +. ...+.+..++.++
T Consensus 289 ~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~- 362 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDL- 362 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSS-
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCC-
Confidence 0 024567777888888899999999999988654432 21 3567788888888
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 341 KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
+..+|+.|..+|..++.... ++. +++.|...+.+. ++++|.++..+|+++|-
T Consensus 363 d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-----d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 363 DVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-----EPEFKADCASGIFLAAE 414 (618)
T ss_dssp CHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-----CHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-----CHHHHHHHHHHHHHHHH
Confidence 89999999999999976321 222 245666666543 34799999999999874
No 54
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.57 E-value=8.6e-14 Score=133.28 Aligned_cols=278 Identities=17% Similarity=0.201 Sum_probs=195.5
Q ss_pred cCHHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCc
Q 015537 73 ENLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTS 149 (405)
Q Consensus 73 ~~l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-~~~~~~~a~~~L~ni~~~~~ 149 (405)
+.++.+++.+.++ ++..+..|+.+|..+............ -..+++.++.+|.++. ++.++..|+++++++...-.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3578899999988 899999999999999753211111111 1247888999998872 38999999999999765322
Q ss_pred hhHH-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537 150 EHTK-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (405)
Q Consensus 150 ~~~~-~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~ 228 (405)
.... .....-+++.+...+.++++.++..++++|..++...+..-...+..++++.++..+ .+.+..++..+++++..
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence 1110 001112466777788888999999999999999865442111111114556666666 67788999999999999
Q ss_pred hhcCC---------------C--CCChh----hhhccHHHHHhhhcCC-------ChHHHHHHHHHHHHhccCChhHHHH
Q 015537 229 FCRGK---------------P--QPPFD----QVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQA 280 (405)
Q Consensus 229 l~~~~---------------~--~~~~~----~~~~~l~~L~~ll~~~-------d~~v~~~a~~~l~~l~~~~~~~~~~ 280 (405)
++... + ..... ....++|.++..+... +..++..++.+|..++....+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~--- 362 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD--- 362 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---
Confidence 88642 0 01111 1255677777777432 3578999999999988654321
Q ss_pred HHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 015537 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (405)
Q Consensus 281 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 358 (405)
++ ..+++.+...+.+.++.++..|+.++|.++.+.. ......+ ..+++.++..+.++ ++.+|..|+|+|++++..
T Consensus 363 ~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence 12 2467888889999999999999999999998664 2211112 46899999999998 899999999999999863
No 55
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.56 E-value=1.9e-13 Score=116.61 Aligned_cols=188 Identities=20% Similarity=0.181 Sum_probs=157.8
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
+.++.+++.|+++++.++..|+..|..+.. .+.++.|+++|.+++ +.++..|+++|+.+..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence 468999999999999999999999998732 246899999999887 9999999999999853
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
.+.++.|+.+|.++++.++..++++|+.+.. .+.++.|+.++ .++++.++..++++|..+..
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC-
Confidence 2578999999999999999999999999853 23678888888 88999999999999999843
Q ss_pred CCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (405)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl 312 (405)
...++.|..++.++++.++..++++|+.+.. ..+++.|..++.++++.++..|..+|+++
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2578999999999999999999999999853 12457888889889999999999999998
Q ss_pred hcCCh
Q 015537 313 VTGDD 317 (405)
Q Consensus 313 ~~~~~ 317 (405)
.....
T Consensus 202 ~~~~~ 206 (211)
T 3ltm_A 202 KSFNH 206 (211)
T ss_dssp -----
T ss_pred CCCCC
Confidence 76543
No 56
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.56 E-value=1.9e-13 Score=115.67 Aligned_cols=183 Identities=22% Similarity=0.212 Sum_probs=154.3
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCCh
Q 015537 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238 (405)
Q Consensus 159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 238 (405)
+..+.++.+|.++++.++..++++|+.+.. .+.++.|+..+ .++++.++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 567899999999999999999999998753 23678899999 78899999999999998853
Q ss_pred hhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChh
Q 015537 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318 (405)
Q Consensus 239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~ 318 (405)
...++.|..++.++++.++..++++|+.+.. ...++.|+.+|.++++.++..|+++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 2678999999999999999999999999753 2357889999999999999999999999852
Q ss_pred hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHH
Q 015537 319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWL 398 (405)
Q Consensus 319 ~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~a 398 (405)
.+.++.|..++.++ ++.+|..|+++|+.+ +.++ .++.|..++.+. ++.||..|.++
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~--~~~~---------~~~~L~~~l~d~-----~~~vr~~A~~a 192 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEI--GGER---------VRAAMEKLAETG-----TGFARKVAVNY 192 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHH--CSHH---------HHHHHHHHHHHC-----CHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHh--Cchh---------HHHHHHHHHhCC-----CHHHHHHHHHH
Confidence 25688899999988 999999999999999 3333 466777777553 24799999999
Q ss_pred Hhhh
Q 015537 399 CLVT 402 (405)
Q Consensus 399 l~n~ 402 (405)
|+++
T Consensus 193 L~~l 196 (201)
T 3ltj_A 193 LETH 196 (201)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 9875
No 57
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.53 E-value=2.5e-13 Score=140.31 Aligned_cols=315 Identities=14% Similarity=0.143 Sum_probs=214.4
Q ss_pred CHHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCc--hHHHHhcCcHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCC
Q 015537 74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRE--DYPQLQFEAAWALTNIASGT 148 (405)
Q Consensus 74 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~l~~Li~lL~~~--~~~~~~~~a~~~L~ni~~~~ 148 (405)
.++.+++.+.++ ++..+..++.++..+...-.... ... ....+++.+...+.++ + +.++..|+.+|+++...-
T Consensus 135 ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~-~~vr~~al~~l~~~~~~~ 212 (861)
T 2bpt_A 135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVS-SSNNILIAIVQGAQSTETS-KAVRLAALNALADSLIFI 212 (861)
T ss_dssp HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGG-GHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHH-HHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHHHHHH
Confidence 478888888888 89999999999988875321110 111 1233577788888876 5 899999999999975421
Q ss_pred chhHH-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHH
Q 015537 149 SEHTK-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (405)
Q Consensus 149 ~~~~~-~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~ 227 (405)
..... ......+++.|...+.++++.++..++.+|..++...+..-...+....++.++..+ .+.+..++..++.++.
T Consensus 213 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~vr~~a~~~l~ 291 (861)
T 2bpt_A 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATM-KSPNDKVASMTVEFWS 291 (861)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHT-TCSSHHHHHHHHHHHH
T ss_pred HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHH
Confidence 11100 000113567778888889999999999999999854332111111113555566666 6778999999999999
Q ss_pred HhhcCCC---------------CCC--hhhhhccHHHHHhhhcCC-------ChHHHHHHHHHHHHhccCChhHHHHHHh
Q 015537 228 NFCRGKP---------------QPP--FDQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAVIE 283 (405)
Q Consensus 228 ~l~~~~~---------------~~~--~~~~~~~l~~L~~ll~~~-------d~~v~~~a~~~l~~l~~~~~~~~~~~~~ 283 (405)
.++.... ... ......++|.++..+... +..++..+..+|..++....+.. +
T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~---~- 367 (861)
T 2bpt_A 292 TICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI---L- 367 (861)
T ss_dssp HHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGG---H-
T ss_pred HHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhH---H-
Confidence 8887520 011 122366788888877642 35788999999998875432211 1
Q ss_pred cCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 015537 284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ 362 (405)
Q Consensus 284 ~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~ 362 (405)
..+++.+...+.+.++.++..|++++|.++.+.. ......+. .+++.++..+.++ ++.+|..++|++++++......
T Consensus 368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~ 445 (861)
T 2bpt_A 368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAES 445 (861)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhhh
Confidence 1346777888888899999999999999997753 33333333 5789999999988 9999999999999998531110
Q ss_pred H-HHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 363 I-QVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 363 ~-~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
. ..-.-..++|.|+..+.+. +.+|..|+|+++++|
T Consensus 446 ~~~~~~~~~~l~~l~~~l~~~------~~v~~~a~~al~~l~ 481 (861)
T 2bpt_A 446 IDPQQHLPGVVQACLIGLQDH------PKVATNCSWTIINLV 481 (861)
T ss_dssp SCTTTTHHHHHHHHHHHHTSC------HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHH
Confidence 0 0001134567777777542 479999999999986
No 58
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.53 E-value=2.8e-13 Score=139.99 Aligned_cols=316 Identities=16% Similarity=0.100 Sum_probs=216.3
Q ss_pred HHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCCCchH-HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537 75 LPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIE-EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (405)
Q Consensus 75 l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~-~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~ 151 (405)
++.+...+.++ ++.++..|+.++..++..- ..... ......+++.+...+.+++ +.++..++.+|..++...++.
T Consensus 181 l~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~-~~~r~~a~~~l~~l~~~~~~~ 258 (861)
T 2bpt_A 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFI-KNNMEREGERNYLMQVVCEATQAED-IEVQAAAFGCLCKIMSKYYTF 258 (861)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHHTCSC-HHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHccChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 45566667766 7899999999998875321 00000 0011235777778887777 899999999999998764443
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-----------------hHHHHHhcCChHHHHHhhhCC-
Q 015537 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-----------------CRDLVLSQGGLVPLLAQLNGQ- 213 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~-----------------~~~~i~~~~~i~~L~~~l~~~- 213 (405)
-...+...+++.+...+.+.++.++..++.++..++..... .-.... ...++.++..+...
T Consensus 259 ~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQN 337 (861)
T ss_dssp CHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcc
Confidence 33333336778888888889999999999999998754211 001111 23566777777431
Q ss_pred -----CchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCCh-hHHHHHHhcCCh
Q 015537 214 -----PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVF 287 (405)
Q Consensus 214 -----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l 287 (405)
.+..++..+..+|..++...+ ......+++.+...+.+.++.++..++++++.++.+.. +.....+. .++
T Consensus 338 ~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il 413 (861)
T 2bpt_A 338 EDPEDDDWNVSMSAGACLQLFAQNCG---NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QAL 413 (861)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHH
T ss_pred cccccccCcHHHHHHHHHHHHHHHcc---HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHH
Confidence 235788999999999987543 22345677888888888899999999999999997753 43333332 478
Q ss_pred HHHHHhcCCCCcchHHHHHHHHhHhhcCChhhH-HHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC----HHH
Q 015537 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT-QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN----REQ 362 (405)
Q Consensus 288 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~-~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~----~~~ 362 (405)
+.++..+.++++.++..+++++|.++..-.... ..-.-..+++.++..+.++ +.++..+||+|.+++.+. ++.
T Consensus 414 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~ 491 (861)
T 2bpt_A 414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSP 491 (861)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCG
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchh
Confidence 889999999999999999999999985321100 0001124577888888654 789999999999997531 111
Q ss_pred HHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 363 IQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 363 ~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
+...+ ..+++.|+.++.+.+. ++.+|..|..+++.++
T Consensus 492 l~~~~-~~il~~L~~~l~~~d~---~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 492 IYNFY-PALVDGLIGAANRIDN---EFNARASAFSALTTMV 528 (861)
T ss_dssp GGGGH-HHHHHHHHHHHTCSCC---GGGHHHHHHHHHHHHH
T ss_pred hHHHH-HHHHHHHHHHHhCcCc---chHHHHHHHHHHHHHH
Confidence 11111 3457778888865432 2479999999998764
No 59
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.49 E-value=8.1e-13 Score=136.76 Aligned_cols=308 Identities=12% Similarity=0.072 Sum_probs=213.3
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCC-chhH
Q 015537 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--DYPQLQFEAAWALTNIASGT-SEHT 152 (405)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~--~~~~~~~~a~~~L~ni~~~~-~~~~ 152 (405)
+.+++.+.++++.+ ..++.++..++... .+ .. .-..+++.|++.+.++ + +.++..++.+|+.++... ++..
T Consensus 93 ~~ll~~l~~~~~~~-~~~~~~l~~i~~~~-~~-~~--~w~~ll~~l~~~l~~~~~~-~~~r~~al~~l~~l~~~~~~~~~ 166 (876)
T 1qgr_A 93 NYVLHTLGTETYRP-SSASQCVAGIACAE-IP-VN--QWPELIPQLVANVTNPNST-EHMKESTLEAIGYICQDIDPEQL 166 (876)
T ss_dssp HHHHHHTTTCCSSS-CHHHHHHHHHHHHH-GG-GT--CCTTHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHhCCCcHHH-HHHHHHHHHHHHhh-Cc-cc--ccHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhcCHhhH
Confidence 34777777777666 77777777776432 11 00 1245789999999888 6 899999999999998642 2210
Q ss_pred HHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhh-HHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537 153 KVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRC-RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~~~~-~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l 229 (405)
.. .-..+++.+...+.++ +..++..++.++++++..-... ........+++.+...+ .+.+..++..++.+|..+
T Consensus 167 ~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~-~~~~~~vr~~a~~~l~~l 244 (876)
T 1qgr_A 167 QD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKI 244 (876)
T ss_dssp GG-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred Hh-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHH
Confidence 00 1124667788888876 6899999999999988542211 00011112455556655 677889999999999999
Q ss_pred hcCCCCCChhhhh-ccHHHHHhhhcCCChHHHHHHHHHHHHhccCCh---------------------hHHHHHHhcCCh
Q 015537 230 CRGKPQPPFDQVS-PALPALAHLIHSNDDEVLTDACWALSYLSDGTN---------------------DKIQAVIEAGVF 287 (405)
Q Consensus 230 ~~~~~~~~~~~~~-~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~---------------------~~~~~~~~~~~l 287 (405)
+...+..-...+. .+++.+...+.+.++.++..++..+..++.... ......+ ..++
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll 323 (876)
T 1qgr_A 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLV 323 (876)
T ss_dssp HHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHh
Confidence 9865544344455 788888888888889999999999888875321 0111011 2356
Q ss_pred HHHHHhcC-------CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 015537 288 PRLAEFLM-------HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (405)
Q Consensus 288 ~~L~~lL~-------~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 360 (405)
+.++..|. +.++.++..|..+++.++...... ++ ..+++.+...+.++ ++.+|..|+|++++++.+..
T Consensus 324 ~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~~-~~~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~ 398 (876)
T 1qgr_A 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPE 398 (876)
T ss_dssp HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSC
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---hH-HHHHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCC
Confidence 67777774 345689999999999998643321 12 24677788888888 99999999999999987643
Q ss_pred -HHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 361 -EQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 361 -~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
+.....+ .+++|.++..|... ++.||..|+|+++++|
T Consensus 399 ~~~~~~~~-~~~l~~l~~~l~d~-----~~~vr~~a~~~l~~~~ 436 (876)
T 1qgr_A 399 PSQLKPLV-IQAMPTLIELMKDP-----SVVVRDTAAWTVGRIC 436 (876)
T ss_dssp HHHHHHHH-HHHHHHHHHHHTCS-----SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHH
Confidence 4444433 45889999988653 3579999999999987
No 60
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.47 E-value=3.3e-12 Score=126.62 Aligned_cols=255 Identities=14% Similarity=0.086 Sum_probs=181.0
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
.+..+.+.|+++++.++..|++++.++.. + .+. ..+++.+..+|.+++ +.+|..|+.++.++...+++...
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~---~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~ 178 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS----S---EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME 178 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC----H---HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC----H---HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH
Confidence 45677777888888888888888888852 1 122 345888999999988 99999999999999987676432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhC--------------CCchhHH
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--------------QPKLSML 219 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~--------------~~~~~~~ 219 (405)
+.++.+..+|.+.++.++..|+++|+.++..++.....+ ...++.++.+|.+ ..++-.+
T Consensus 179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q 251 (618)
T 1w63_A 179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ 251 (618)
T ss_dssp -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence 678888999999999999999999999997765432222 1345555555421 2355555
Q ss_pred HHHHHHHHHhhcCCCCCC--------------------------------------hhhhhccHHHHHhhhcCCChHHHH
Q 015537 220 RNATWTLSNFCRGKPQPP--------------------------------------FDQVSPALPALAHLIHSNDDEVLT 261 (405)
Q Consensus 220 ~~a~~~l~~l~~~~~~~~--------------------------------------~~~~~~~l~~L~~ll~~~d~~v~~ 261 (405)
..++.+|..++..+|... ......+++.|..++.++|+.++.
T Consensus 252 ~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~ 331 (618)
T 1w63_A 252 VRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRY 331 (618)
T ss_dssp HHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHH
Confidence 556666666655432100 001123456677777777888888
Q ss_pred HHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCc
Q 015537 262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK 341 (405)
Q Consensus 262 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~ 341 (405)
.++.+|..++...+.. +. ...+.++.++.+++..++..|+.++..++.... .+. +++.|...+.+. +
T Consensus 332 ~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-d 398 (618)
T 1w63_A 332 VALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-E 398 (618)
T ss_dssp HHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-C
Confidence 8888888887544332 21 345688888999999999999999999986543 222 345677777777 8
Q ss_pred hhHHHHHHHHHHHHhc
Q 015537 342 KSIKKEACWTVSNITA 357 (405)
Q Consensus 342 ~~v~~~a~~~L~nl~~ 357 (405)
..+|..+..+|+.++.
T Consensus 399 ~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 399 PEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899999999999976
No 61
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.41 E-value=1.7e-12 Score=139.21 Aligned_cols=272 Identities=14% Similarity=0.120 Sum_probs=200.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
.++.+++.+.+.|++.+..|...|.+.+... ....+.-....+++.+++.|.+.+ +.+|..|+.+|++++...++.
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~-- 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY-- 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence 4789999999999999999999998876543 111111122356888999998777 999999999999999864441
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh------HHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHH
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC------RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~------~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~ 227 (405)
.+ ..+++.|+..+.++++.++..++.+|+.++...... ... .....++.|+..+..+++..++..++.++.
T Consensus 83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 11 246788889898889999999999999998543321 111 123467888888843578899999999999
Q ss_pred HhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC-CcchHHHHH
Q 015537 228 NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPAL 306 (405)
Q Consensus 228 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~ 306 (405)
.++...+.........+++.+...+.++++.++..++.+++.++....+. + -..+++.++..|.+. +..++..++
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHH
Confidence 99975433333345778889999999889999999999999998765432 1 124577788777544 346788899
Q ss_pred HHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 015537 307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (405)
Q Consensus 307 ~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 358 (405)
.+++.++...+..... .-..+++.+...+.+. ++.+|..+.++++.++..
T Consensus 236 ~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 9999998654332111 1136899999999988 899999999999999874
No 62
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.34 E-value=1.9e-11 Score=122.50 Aligned_cols=215 Identities=16% Similarity=0.123 Sum_probs=158.5
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCC-Chhh
Q 015537 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGD-SPRC 193 (405)
Q Consensus 116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~-~~~~ 193 (405)
.++| +++.|++++ +..|..|+++|+|++.+ +..+..+...|+|..++ .+|.+++.+++..|+++|.||+.+ ++..
T Consensus 35 ~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 35 KILP-VLKDLKSPD-AKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp TTHH-HHHHHSSSC-CSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHH-HHHHcCCCC-HHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 3444 567789888 89999999999999975 88888999999887765 578889999999999999999965 4667
Q ss_pred HHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC
Q 015537 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (405)
Q Consensus 194 ~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 273 (405)
.+.+...|++++|+.++.+ ....+..+......... .....+ .++...++.+|.+|+.+
T Consensus 112 ~~~l~~~~il~~L~~~l~~---------~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~l~lL~~L~e~ 170 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKA---------VLETLTTSEPPFSKLLK-AQQRLV-----------WDITGSLLVLIGLLALA 170 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHH---------HHHHHHCBTTBGGGSCH-HHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHh---------hHHHHhhhccccccccH-HHHHHH-----------HHHHHHHHHHHHHHHhC
Confidence 7888899999999999831 22222222211100000 001111 23456677888888888
Q ss_pred ChhHHHHHHhcCChHHHHHhcCCC---CcchHHHHHHHHhHhhcCChhhHHHHHhcCch---HHHHHhhcCCCchhHHHH
Q 015537 274 TNDKIQAVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL---PCLLNLLSGNYKKSIKKE 347 (405)
Q Consensus 274 ~~~~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l---~~L~~ll~~~~~~~v~~~ 347 (405)
+++....+...++++.++.+|.+. ..+++..|+.+|.+++..++...+.+.+.+.. ..+..+..+ +...+..
T Consensus 171 s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~--~~~~~~l 248 (684)
T 4gmo_A 171 RDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG--TDPRAVM 248 (684)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS--SCTTHHH
T ss_pred CHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC--CcHHHHH
Confidence 888888888899999999998432 35799999999999999999888888887743 333333333 3456889
Q ss_pred HHHHHHHHh
Q 015537 348 ACWTVSNIT 356 (405)
Q Consensus 348 a~~~L~nl~ 356 (405)
+|++|.|+.
T Consensus 249 a~giL~Ni~ 257 (684)
T 4gmo_A 249 ACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhHh
Confidence 999999985
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.34 E-value=8.9e-10 Score=108.96 Aligned_cols=297 Identities=15% Similarity=0.121 Sum_probs=200.8
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~ 152 (405)
.....+++.+.+++...+.-+.-.+..++..+ + +.++ =+++.+.+=|++++ +.++..|+.+|+++.. ++..
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~--~--e~~~--L~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~ 144 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN--S--ELIR--LINNAIKNDLASRN-PTFMGLALHCIANVGS--REMA 144 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC--H--HHHH--HHHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC--c--HHHH--HHHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHH
Confidence 46789999999999999988888888886432 2 2211 13667777888888 9999999999999955 4422
Q ss_pred HHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhh
Q 015537 153 KVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL--~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~ 230 (405)
. .+++.+..+| .+.++.|+..|+.++.++...+|+. +...+.++.+..+| .+.++.++..++.++..++
T Consensus 145 ~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 145 E-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp H-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHH
Confidence 2 4678999999 8899999999999999999766532 22246888898888 8889999999999999998
Q ss_pred cCCCCCChhhhhccHHHHHhhhcCC-------------ChHHHHHHHHHHHHhccCC-hhHHHH-------HH-------
Q 015537 231 RGKPQPPFDQVSPALPALAHLIHSN-------------DDEVLTDACWALSYLSDGT-NDKIQA-------VI------- 282 (405)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~-------------d~~v~~~a~~~l~~l~~~~-~~~~~~-------~~------- 282 (405)
...+..-......++..|..++..+ ++..+...+..+..++..+ ++.... ++
T Consensus 216 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ 295 (621)
T 2vgl_A 216 QKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPP 295 (621)
T ss_dssp HHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCc
Confidence 7653210011111222222222111 3445555555555544321 111110 00
Q ss_pred -------------------------------hcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHH
Q 015537 283 -------------------------------EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC 331 (405)
Q Consensus 283 -------------------------------~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~ 331 (405)
-..++..|..+|.+.++.++..++..|..++...+. .. .+ ....+.
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~-~~~~~~ 372 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AV-KTHIET 372 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HH-HTTHHH
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HH-HHHHHH
Confidence 012355677778888889999999999998876532 11 22 245777
Q ss_pred HHHhhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 332 LLNLLS-GNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 332 L~~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
++..+. ++ +..||..+.-+|..++ ++.++..+ +..|.+.+... ++++|.++..+|+.+|
T Consensus 373 i~~~L~~d~-d~~Ir~~aL~lL~~l~--~~~Nv~~I-----v~eL~~yl~~~-----d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 373 VINALKTER-DVSVRQRAVDLLYAMC--DRSNAQQI-----VAEMLSYLETA-----DYSIREEIVLKVAILA 432 (621)
T ss_dssp HHHHHTTCC-CHHHHHHHHHHHHHHC--CHHHHHHH-----HHHHHHHHHHC-----CHHHHHHHHHHHHHHH
T ss_pred HHHHhccCC-CHhHHHHHHHHHHHHc--ChhhHHHH-----HHHHHHHHHhc-----CHHHHHHHHHHHHHHH
Confidence 888888 77 8999999999999996 44555544 44566666543 2468999999998876
No 64
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.23 E-value=1.3e-10 Score=124.69 Aligned_cols=315 Identities=12% Similarity=0.123 Sum_probs=209.5
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCC----chHHHHhcCcHHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCC
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSP----PIEEVIRSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIASGT 148 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~----~~~~~~~~g~l~~Li~lL~~-~~~~~~~~~a~~~L~ni~~~~ 148 (405)
.++.++..+.++++.++..|+.++..++..-..+ ....-....++|.|+..+.+ ++ +.++..|+.+|+.++...
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence 3567777888888888888888888886543111 01111234578999999984 55 899999999999998532
Q ss_pred chhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (405)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~ 228 (405)
........ ..+++.|+..|.++++.++..++.+|+.++...+. .++ ...++.++..+....+..++..++.++..
T Consensus 166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IVF-VDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HHH-HHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 22111111 24667788888888999999999999999965442 121 23577888887555445677888999998
Q ss_pred hhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC------------
Q 015537 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH------------ 296 (405)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~------------ 296 (405)
++...+..-......++|.+...+.+++++++..+++++..++....+.....+ ..+++.++..+..
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence 887654333334578999999999988999999999999988765433221111 2334555444421
Q ss_pred -------------------------CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHH
Q 015537 297 -------------------------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351 (405)
Q Consensus 297 -------------------------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~ 351 (405)
..+.++..|+.+++.++...+.....++ ..+++.++..+.+. ++.+|..+.-+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA 397 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence 1235688899999999874443233333 36788888888877 88999999988
Q ss_pred HHHHhc--CC-----------------HHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 352 VSNITA--GN-----------------REQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 352 L~nl~~--~~-----------------~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
+..++. +. .......+ ..+++.+...+.+. ++.+|..++.+++.++
T Consensus 398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~-----~~~vr~~~~~~L~~l~ 462 (1230)
T 1u6g_C 398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEK-----SVKTRQCCFNMLTELV 462 (1230)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCS-----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccC-----CHHHHHHHHHHHHHHH
Confidence 887764 11 11112221 33555566656543 3468988888888764
No 65
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.16 E-value=1.3e-09 Score=109.37 Aligned_cols=268 Identities=13% Similarity=0.130 Sum_probs=182.1
Q ss_pred CHHHHHHhhc---CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-------CHHHHHHHHHHHHH
Q 015537 74 NLPVMVAGVW---SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------YPQLQFEAAWALTN 143 (405)
Q Consensus 74 ~l~~l~~~l~---s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-------~~~~~~~a~~~L~n 143 (405)
++..+-..|. ++++.++.-|+..+.-+-++.. . .++..|...|.+++ .+.++..|+..|+-
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----R-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----H-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----H-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3455555565 5567777778877777755431 1 14677777776543 26789999999999
Q ss_pred HhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHH
Q 015537 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT 223 (405)
Q Consensus 144 i~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~ 223 (405)
+..++... .+++.|..+|.+++..+.+.++.+||-+..+... ..++..|+..+....+..+++.++
T Consensus 464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-------~~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-------PEAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-------HHHHHHHHHHHhccCcHHHHHHHH
Confidence 87764321 2567788888887777888999999987533321 113456666665666889999999
Q ss_pred HHHHHhhcCCCCCChhhhhccHHHHHhhhc-CCChHHHHHHHHHHHH--hccCChhHHHHHHhcCChHHHHHh-cCCCCc
Q 015537 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVFPRLAEF-LMHPSP 299 (405)
Q Consensus 224 ~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~ 299 (405)
.+|..+..+.+ ..++.++..|. +.++.++..++.+++- .-.++...+ +.|+.. ..+.+.
T Consensus 530 lgLGll~~g~~--------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aI---------q~LL~~~~~d~~d 592 (963)
T 4ady_A 530 VGLALINYGRQ--------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAV---------KRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHHTTTCG--------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHH---------HHHHHHHHHCSCH
T ss_pred HHHHhhhCCCh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHH---------HHHHHHhccCCcH
Confidence 99998877653 44555666554 4678888888777654 334444433 333333 356677
Q ss_pred chHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 015537 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFF 379 (405)
Q Consensus 300 ~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL 379 (405)
.++..|+.+||.|..++++ .++.++.++.+..++.+|..|+++|+.++++++. . .++..|..++
T Consensus 593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~-----~aid~L~~L~ 656 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--Q-----SAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--H-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--H-----HHHHHHHHHc
Confidence 8999999999999888752 3455666555444999999999999999987663 1 2344455544
Q ss_pred hcccccchhhhHHHHHHHHHhhh
Q 015537 380 FMFLHFFFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 380 ~~~~~~~~~~~vr~~A~~al~n~ 402 (405)
. +.+ ..||+.|+.+||..
T Consensus 657 ~-D~d----~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 657 K-DPV----DFVRQAAMIALSMI 674 (963)
T ss_dssp T-CSS----HHHHHHHHHHHHHH
T ss_pred c-CCC----HHHHHHHHHHHHHH
Confidence 3 333 37999999999853
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.14 E-value=1e-10 Score=117.10 Aligned_cols=199 Identities=14% Similarity=0.062 Sum_probs=152.0
Q ss_pred CChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHH-HHhhhcCCChHHHHHHHHHHHHhccC-ChhHH
Q 015537 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA-LAHLIHSNDDEVLTDACWALSYLSDG-TNDKI 278 (405)
Q Consensus 201 ~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~-L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~ 278 (405)
..+.|+++.| +++++..+..|+++|++|+.+..........++++. +..+|.+++.+|+..|+++|.+|+.. ..+..
T Consensus 34 ~~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 3577888988 889999999999999999975333333344667654 56788889999999999999999854 56777
Q ss_pred HHHHhcCChHHHHHhcCCCC---------------------cchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhc
Q 015537 279 QAVIEAGVFPRLAEFLMHPS---------------------PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337 (405)
Q Consensus 279 ~~~~~~~~l~~L~~lL~~~~---------------------~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~ 337 (405)
..++..|+++.|..+|.... ..+...++.+|.+++.+++.....+...+.++.|+.+|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 88999999999998874210 124456788999999888888888888999999999985
Q ss_pred CC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 338 GN--YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 338 ~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
+. ....++..|+.+|.+++..+++.++.+.+.+....+.-++....+. ...|..+++.|.|..
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~---~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT---DPRAVMACGVLHNVF 257 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS---CTTHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC---cHHHHHHHHHHHhHh
Confidence 43 2467999999999999999999999888876544333333211111 135788999998864
No 67
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.09 E-value=2.2e-09 Score=106.17 Aligned_cols=253 Identities=14% Similarity=0.106 Sum_probs=142.9
Q ss_pred HHHHHhh--cCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 76 PVMVAGV--WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 76 ~~l~~~l--~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
+.+.+.+ .+.++.++..|+.++.++.... | +.+...+.++.+.++|.+.+ +.++..|+.+|..++..+++.-
T Consensus 149 ~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~--p--~~~~~~~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~~~~~~~~- 222 (621)
T 2vgl_A 149 GEIPKILVAGDTMDSVKQSAALCLLRLYRTS--P--DLVPMGDWTSRVVHLLNDQH-LGVVTAATSLITTLAQKNPEEF- 222 (621)
T ss_dssp THHHHHHHCSSSCHHHHHHHHHHHHHHHHHC--G--GGCCCCSCHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCHHHH-
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC--h--hhcCchhHHHHHHHHhCCCC-ccHHHHHHHHHHHHHHhChHHH-
Confidence 3334444 4445555555555555554321 1 11112478999999998777 9999999999999988655421
Q ss_pred HHHhCCChHHHHH----hhCCC-------------CHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhhCC--
Q 015537 154 VVIDHGAVPIFVK----LLYSP-------------SDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQ-- 213 (405)
Q Consensus 154 ~~~~~g~i~~L~~----lL~~~-------------~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~L~~~l~~~-- 213 (405)
...+|.++. ++..+ ++-++...+..|+.++.. ++..++.+.+ .+..++..+...
T Consensus 223 ----~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~k 296 (621)
T 2vgl_A 223 ----KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPK 296 (621)
T ss_dssp ----TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCS
T ss_pred ----HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcc
Confidence 123333333 33211 566777777777777653 3434333322 233333322111
Q ss_pred ------Cc--hhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcC
Q 015537 214 ------PK--LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (405)
Q Consensus 214 ------~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 285 (405)
.+ ..+...++.++..+.. .......++..|..++.++|+.++..++.+|..++...+. .. ++. .
T Consensus 297 s~~l~~~n~~~aVl~ea~~~i~~l~~-----~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~~-~ 368 (621)
T 2vgl_A 297 SKKVQHSNAKNAVLFEAISLIIHHDS-----EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AVK-T 368 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HHH-T
T ss_pred cccccccchHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HHH-H
Confidence 12 2666666777666641 2233455666777777777777777777777777765432 11 121 2
Q ss_pred ChHHHHHhcC-CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537 286 VFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (405)
Q Consensus 286 ~l~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (405)
....++..|. +++..++..++.++..++. +...+. ++..|...+... +..++.++...++.++
T Consensus 369 ~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL~~yl~~~-d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 369 HIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEMLSYLETA-DYSIREEIVLKVAILA 432 (621)
T ss_dssp THHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH-----HHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 4566666666 6677777777777777663 222332 233455555555 5666666666666554
No 68
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.09 E-value=1.8e-08 Score=79.91 Aligned_cols=188 Identities=15% Similarity=0.194 Sum_probs=156.1
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCC
Q 015537 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236 (405)
Q Consensus 157 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~ 236 (405)
+..++..++.+|.++-..++.+|+..+.+++...++..+. .+..|+.++.++.....-.....++..++.-.|
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 3457888999999999999999999999999988876444 345677777788888888899999999998755
Q ss_pred ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCC
Q 015537 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD 316 (405)
Q Consensus 237 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 316 (405)
..+.+.+|.+..-..-.|+.++.+...+|..++..+++... +++.-+..+|.+++..-+..|+..|+.+....
T Consensus 103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 45678899998888889999999999999999988887655 44578889999999888888888888876544
Q ss_pred hhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 015537 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (405)
Q Consensus 317 ~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (405)
... + ..++|.|..+|.+. +.-+|..|.-+|.+++..++....
T Consensus 176 ~~y---v--~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRk 217 (253)
T 2db0_A 176 FKY---V--NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRK 217 (253)
T ss_dssp HHH---H--GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred ccc---c--CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHH
Confidence 332 2 26899999999999 999999999999999998888443
No 69
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.01 E-value=1.9e-07 Score=74.12 Aligned_cols=216 Identities=16% Similarity=0.186 Sum_probs=167.1
Q ss_pred hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChh
Q 015537 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPR 192 (405)
Q Consensus 114 ~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~ 192 (405)
+..++..++.+|+++- ..++..|+.++.+++...++..... +..|+.+++ +....+.+....++|.++...|+
T Consensus 30 d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 5678999999999887 8999999999999999877765544 345555554 56677777888999999987775
Q ss_pred hHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 015537 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (405)
Q Consensus 193 ~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (405)
.-+ +.++.+..-+ .-.++.++.+..++|..+.+..| ....+++.-+..++.+.|..=+..++..++.+..
T Consensus 104 ~v~-----~vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 104 LVK-----SMIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HHH-----HHHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HHH-----hhHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 322 2455555555 56699999999999999998865 3345666778888998887777778888887776
Q ss_pred CChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 015537 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (405)
Q Consensus 273 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L 352 (405)
+....+. -.+|+|..+|.+.+.-++..|+.+|++++..++..+..+.+ .+.=+++. +..+.+..--.|
T Consensus 174 n~~~yv~-----PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~-S~lv~~~V~egL 241 (253)
T 2db0_A 174 NSFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDT-SSLVNKTVKEGI 241 (253)
T ss_dssp TTHHHHG-----GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCS-CHHHHHHHHHHH
T ss_pred cCccccC-----cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCc-HHHHHHHHHHHH
Confidence 6655433 56899999999999999999999999999999876664433 45556666 777888887888
Q ss_pred HHHhc
Q 015537 353 SNITA 357 (405)
Q Consensus 353 ~nl~~ 357 (405)
+.++.
T Consensus 242 ~rl~l 246 (253)
T 2db0_A 242 SRLLL 246 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 70
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.90 E-value=1.2e-07 Score=85.97 Aligned_cols=251 Identities=13% Similarity=0.084 Sum_probs=166.0
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
.+..+++.+.++|...+.-..-.+..+.... ++ ++ =++..|.+=+++++ +-++-.|+++|++|... +...
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e----~i--Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~~--~m~~ 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-ED----VI--IVTSSLTKDMTGKE-DSYRGPAVRALCQITDS--TMLQ 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SC----GG--GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCCT--TTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HH----HH--HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCCH--HHHH
Confidence 4677888999999999988888887775331 22 22 24788888899988 99999999999999874 3222
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
.+.+.+.+.|.+.++.|+..|+.+..++....|+. + .+++..+-+++ .+.++.++.+++.++..++..+
T Consensus 139 -----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v--~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 139 -----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V--KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp -----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H--HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence 35677888899999999999999999999888753 2 35888888888 8889999999999999998763
Q ss_pred CCCChhhhhccHHHHHhhhcC---CChHHHHHHHHHHHHhccCC-hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHH
Q 015537 234 PQPPFDQVSPALPALAHLIHS---NDDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (405)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~---~d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l 309 (405)
+ ..+..++..+.. .++..+...++.+..++..+ +.. ...+++.+..+|++.++.|...|+++|
T Consensus 208 ~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 208 R--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp H--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred h--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 1 133344443333 25666666777776666544 222 235678889999999999999999999
Q ss_pred hHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 015537 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (405)
Q Consensus 310 ~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (405)
..+...+.. +. ..++..|..++.++ ++.+|-.|...|..+....|+.++
T Consensus 275 ~~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~ 323 (355)
T 3tjz_B 275 VNLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVT 323 (355)
T ss_dssp TC----------------CCCTHHHHHHSS-SSSSHHHHHHCC------------
T ss_pred HhccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHH
Confidence 887542221 11 24566777888888 999999999999999887777554
No 71
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.88 E-value=2.5e-08 Score=86.66 Aligned_cols=185 Identities=13% Similarity=0.089 Sum_probs=141.4
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~-~~~~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
+.+.+.+.+.++..+..|+..|..++.+. ......- -..+++.|...+. +.+ ..++..|+.+|+.++..-...-..
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~-~~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGE-YGALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCC-CHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCC-HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHH
Confidence 35788889999999999999999998762 1111100 1245788888895 777 899999999999998642221112
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-
Q 015537 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK- 233 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~- 233 (405)
.+ ..++|.++..+.++++.+++.+..+|..++...+ . + ..++.+...+ ++.++.++..++..|..+....
T Consensus 95 ~~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~-~-----~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 95 YA-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L-E-----AQQESIVESL-SNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H-H-----HHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H-H-----HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcC
Confidence 22 2478999999999999999999999999987543 2 1 2466778888 6789999999999999966553
Q ss_pred CC-CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 015537 234 PQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (405)
Q Consensus 234 ~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (405)
+. .....+..++|.+..++.+.+++++..|..+++.++.
T Consensus 166 ~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 166 PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 33 2344557899999999999999999999999998864
No 72
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.88 E-value=7.3e-09 Score=90.06 Aligned_cols=184 Identities=12% Similarity=0.132 Sum_probs=139.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC-hhhHHH
Q 015537 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDS-PRCRDL 196 (405)
Q Consensus 119 ~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~-~~~~~~ 196 (405)
+.+.+.+.+.+ +..|..|+..|..+..+.+....... ..+++.|...+. +.+..++..++.+++.++..- +.+...
T Consensus 18 ~~l~~~l~s~~-w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKK-WTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp TTHHHHHTCSS-HHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHhhhccCC-HHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 45778888877 89999999999999876332110000 135778888884 899999999999999999432 222121
Q ss_pred HHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC-h
Q 015537 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT-N 275 (405)
Q Consensus 197 i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~-~ 275 (405)
+ ..+++.++..+ .+++..++..+..++..++...+ ...++|.+...+.+.++.++..++..|+.+.... +
T Consensus 96 ~--~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 A--SACVPSLLEKF-KEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp H--HHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred H--HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 1 23678888888 77889999999999999987632 3568899999999999999999999999965442 3
Q ss_pred hH-HHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537 276 DK-IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 276 ~~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~ 314 (405)
+. ....+ ..+++.++.+|.+.++.+|..|..+++.++.
T Consensus 167 ~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 167 TALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 21 12222 2578999999999999999999999999884
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.85 E-value=8.5e-07 Score=89.34 Aligned_cols=273 Identities=14% Similarity=0.078 Sum_probs=184.0
Q ss_pred HHHHHHhhcCCC--------hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015537 75 LPVMVAGVWSND--------SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (405)
Q Consensus 75 l~~l~~~l~s~~--------~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~ 146 (405)
+..|...|.+++ +.++..|+..|.-...++.++ .+++.|..+|.+++ +.++..|+.+|+-+..
T Consensus 431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e--------ev~e~L~~~L~dd~-~~~~~~AalALGli~v 501 (963)
T 4ady_A 431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI--------EVYEALKEVLYNDS-ATSGEAAALGMGLCML 501 (963)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH--------HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence 444555555443 556666777776654443111 24777888888777 6778899999998855
Q ss_pred CCchhHHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHH
Q 015537 147 GTSEHTKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (405)
Q Consensus 147 ~~~~~~~~~~~~g~i~~L~~lL-~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~ 225 (405)
++... .++..|+..+ .+.+..++..++.+|+.+....+. .++.++..|..+.++.++..++.+
T Consensus 502 GTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~a 565 (963)
T 4ady_A 502 GTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFT 565 (963)
T ss_dssp TCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHH
T ss_pred ccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 53322 1344555543 456789999999999999766553 466778888777889999988888
Q ss_pred HHHhhcCCCCCChhhhhccHHHHHhhh-cCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-CCCCcchHH
Q 015537 226 LSNFCRGKPQPPFDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLI 303 (405)
Q Consensus 226 l~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~ 303 (405)
+.--+-+..+ ...++.|++.+ .+.+..++..|+.+|+.+.-++++ .++.++.+| .+.++.+|.
T Consensus 566 lglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~ 630 (963)
T 4ady_A 566 IALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRC 630 (963)
T ss_dssp HHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHH
T ss_pred HHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHH
Confidence 8755544221 13444444433 456788999999999998766653 346666654 678899999
Q ss_pred HHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH----HHHHHHhCcHHHHHHHH
Q 015537 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ----IQVIMHVHAFSIIVAFF 379 (405)
Q Consensus 304 ~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~----~~~l~~~~~i~~L~~lL 379 (405)
.+..++|.++.+++.. .+++.|..+..++ +..||..|+.+|+.+..++.+. +.. +...|....
T Consensus 631 gAalALGli~aGn~~~-------~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~-----~l~~L~~~~ 697 (963)
T 4ady_A 631 GTAFALGIACAGKGLQ-------SAIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTEKLNPQVAD-----INKNFLSVI 697 (963)
T ss_dssp HHHHHHHHHTSSSCCH-------HHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCTTTCTTHHH-----HHHHHHHHH
T ss_pred HHHHHHHHhccCCCcH-------HHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCccccchHHHH-----HHHHHHHHH
Confidence 9999999999887632 2456778888888 9999999999999999865443 222 223344444
Q ss_pred hcccccchhhhHHHHHHHHHhhhc
Q 015537 380 FMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 380 ~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
... ++ ++..+=-|..|.|-.+
T Consensus 698 ~dk-~~--d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 698 TNK-HQ--EGLAKFGACVAQGIMN 718 (963)
T ss_dssp HCS-SS--CHHHHHHHHHHHHHHT
T ss_pred hcc-cc--cHHHHHHHHHHHHHHh
Confidence 321 11 2456777777776543
No 74
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.84 E-value=2.4e-08 Score=86.86 Aligned_cols=191 Identities=13% Similarity=0.149 Sum_probs=141.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHH-HhcCCchhHHHHHh-CCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCC--hhhH
Q 015537 120 RFVEFLLREDYPQLQFEAAWALTN-IASGTSEHTKVVID-HGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDS--PRCR 194 (405)
Q Consensus 120 ~Li~lL~~~~~~~~~~~a~~~L~n-i~~~~~~~~~~~~~-~g~i~~L~~lL-~~~~~~i~~~a~~~L~nl~~~~--~~~~ 194 (405)
.|.+.+.+.+ +.-|.+|+..|.. ++.+.++....-.+ ..++..|...+ ++.+..++..|+.+|+.|+.+- +.+.
T Consensus 20 ~f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 20 DFQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp THHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hHHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 3566777877 8999999999999 87653332100000 13567788888 6889999999999999998422 2222
Q ss_pred -HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCCh-hhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 015537 195 -DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (405)
Q Consensus 195 -~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (405)
... .-.++.++..+ .+....++..+..++..++..-+.... .....+++.|...+++.++.++..++.+|..++.
T Consensus 99 ~~y~--~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 99 KDYV--SLVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHH--HHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 221 12578888888 777788999999999999986422221 1256788999999999999999999999999886
Q ss_pred CCh---hHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537 273 GTN---DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 273 ~~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~ 314 (405)
... ......+...++|.+..++.+.++.+|..|..+++.++.
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 544 323233335789999999999999999999999999873
No 75
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.82 E-value=1.2e-07 Score=85.83 Aligned_cols=243 Identities=12% Similarity=0.069 Sum_probs=140.8
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
....+.+.++++++-++-.|++.+.++... +..+. +.+.+.+.|.+.+ |-++..|+.+...+....++..
T Consensus 105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~m~~~-----l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~pe~v- 174 (355)
T 3tjz_B 105 VTSSLTKDMTGKEDSYRGPAVRALCQITDS---TMLQA-----IERYMKQAIVDKV-PSVSSSALVSSLHLLKCSFDVV- 174 (355)
T ss_dssp GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---TTHHH-----HHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCHHHH-
T ss_pred HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---HHHHH-----HHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCHHHH-
Confidence 568888899999999999999999999632 33333 4677888888888 9999999999999998877743
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC--chhHHHHHHHHHHHhhc
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCR 231 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~--~~~~~~~a~~~l~~l~~ 231 (405)
+ +.++.+-.++.+.++.++.+|+.+|..+...+.. .+..++..+.... ++-.+...+..+..++.
T Consensus 175 ---~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~ 241 (355)
T 3tjz_B 175 ---K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLE 241 (355)
T ss_dssp ---H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--
T ss_pred ---H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhcc
Confidence 2 6899999999999999999999999999875532 3344555554422 45444445555555544
Q ss_pred CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (405)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n 311 (405)
.+ ........++.+..+|++.++.|.-+|++++..+...+.. .. ..++..+..+|.++++.++..|++.|..
T Consensus 242 ~d---~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~ 313 (355)
T 3tjz_B 242 DE---DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNK 313 (355)
T ss_dssp ------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC--
T ss_pred cc---chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 42 1122356778888999999999999999999998653222 11 2446777788889999999999999999
Q ss_pred hhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 015537 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (405)
Q Consensus 312 l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~ 353 (405)
++...+...+ ..-.-+..++.++ +..+...|.-+|.
T Consensus 314 l~~~~P~~v~-----~~n~~ie~li~d~-n~sI~t~Aittll 349 (355)
T 3tjz_B 314 VAMKHPSAVT-----ACNLDLENLVTDA-NRSIATLAITTLL 349 (355)
T ss_dssp ------------------------------------------
T ss_pred HHHHCcHHHH-----HHHHHHHHHccCC-cHhHHHHHHHHhh
Confidence 9987765433 2344567788888 7777666655543
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.82 E-value=1.4e-07 Score=78.14 Aligned_cols=186 Identities=16% Similarity=0.187 Sum_probs=150.4
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 015537 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (405)
Q Consensus 116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (405)
+.+..|..+|...+ +.++..|+.+|..+...-+...+...-...++.++.++.+.+..+.-.|+.+|..+..+.|-..+
T Consensus 33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 46888999998888 99999999999999886445444444447899999999999999999999999999988765444
Q ss_pred HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCCh
Q 015537 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (405)
Q Consensus 196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (405)
.+.. ....+.+++ ..+++-++..++..+..+- .......++..+..++.+.|..++..++.++.+++..+.
T Consensus 112 ~y~K--l~~aL~dli-k~~~~il~~eaae~Lgklk------v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 112 TFLK--AAKTLVSLL-ESPDDMMRIETIDVLSKLQ------PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHH--HHHHHHHHT-TSCCHHHHHHHHHHHHHCC------BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHH--HHHHHHHHh-cCCCchHHHHHHHHhCcCC------cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 4433 567888888 6889999999999999881 112235677888999999999999999999999987543
Q ss_pred --hHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCC
Q 015537 276 --DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD 316 (405)
Q Consensus 276 --~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 316 (405)
+.. .+++.-+-.+|++.|+.++..|+.++-.+.+..
T Consensus 183 D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 183 DSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp SCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 222 256677888999999999999999999998653
No 77
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.81 E-value=2.5e-07 Score=76.60 Aligned_cols=186 Identities=15% Similarity=0.141 Sum_probs=149.9
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~ 153 (405)
.+..++.+|+..|+.++..|+.++.++++.- +.......-..+++.++.++.+.+ +.+...|+.||..+..+.+-.-.
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCHH
Confidence 4688899999999999999999999999763 333444445567999999999888 99999999999999998776666
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
.+.. ++.+|..++.++++-+.+.++..++.+---++ ..+++..+..++ .+.|..++..+..++.+++...
T Consensus 112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-------~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-------SKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-------CHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-------hHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhccc
Confidence 5553 67889999999999999999999999932222 123566788888 9999999999999999999864
Q ss_pred CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC
Q 015537 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (405)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 273 (405)
.. .....+++.-+-.++++.|+.++.-|+.++-.+...
T Consensus 182 ~D--~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 182 AD--SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SS--CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred CC--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 22 222345556667788999999999999999988754
No 78
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.75 E-value=1.4e-09 Score=84.97 Aligned_cols=121 Identities=19% Similarity=0.161 Sum_probs=90.6
Q ss_pred hccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHH
Q 015537 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (405)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 321 (405)
...++.+..+|+++++.++..++++|+.+... .++.|+.+|.++++.++..|+++||++.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence 45677889999999999999999999876421 25889999999999999999999999852 1
Q ss_pred HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLV 401 (405)
Q Consensus 322 ~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n 401 (405)
..++.|..++.++ ++.||..|+|+|+++. ++ +.++.|+.+|.+. ++.||..|.++|++
T Consensus 73 -----~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~--~~---------~a~~~L~~~l~d~-----~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 -----RAVEPLIKLLEDD-SGFVRSGAARSLEQIG--GE---------RVRAAMEKLAETG-----TGFARKVAVNYLET 130 (131)
T ss_dssp -----HHHHHHHHHHHHC-CTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTTSC-----CTHHHHHHHHHGGG
T ss_pred -----HHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHhCC-----CHHHHHHHHHHHHh
Confidence 2478889999888 9999999999999994 22 3467888888643 24799999999986
Q ss_pred h
Q 015537 402 T 402 (405)
Q Consensus 402 ~ 402 (405)
.
T Consensus 131 i 131 (131)
T 1te4_A 131 H 131 (131)
T ss_dssp C
T ss_pred C
Confidence 3
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.7e-07 Score=81.55 Aligned_cols=194 Identities=10% Similarity=0.096 Sum_probs=141.9
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH-hhCCChhhHHHHHh-cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC-CCCh-
Q 015537 163 IFVKLLYSPSDDVREQAVWALGN-IAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPF- 238 (405)
Q Consensus 163 ~L~~lL~~~~~~i~~~a~~~L~n-l~~~~~~~~~~i~~-~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~- 238 (405)
.+...+.+.++.-|..++..|+. ++.+.+.......+ ...+..|...+.++.+..++..++.++..|+.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35567788999999999999999 87543322100001 12355666667568899999999999999997644 3333
Q ss_pred hhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChh
Q 015537 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318 (405)
Q Consensus 239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~ 318 (405)
.....++|.++..+.+..+.|+..+..++..++...+.....-.-..+++.|...|.+.++.++..++.+|+.++.....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 45677899999999988899999988888888754321100000002467888999999999999999999999965542
Q ss_pred ---hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 319 ---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 319 ---~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
.....+...++|.|..++.++ ++.+|..|.-+++-++.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 222333357999999999999 99999999999999864
No 80
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.67 E-value=2.3e-09 Score=83.64 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=92.0
Q ss_pred cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 015537 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (405)
Q Consensus 115 ~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 194 (405)
...++.++.+|++++ +.++..|+++|+++... .++.|+.+|.++++.++..++++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp ----------CCSSC-CCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 445788899998887 89999999999876431 36899999999999999999999999852 1
Q ss_pred HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHh
Q 015537 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270 (405)
Q Consensus 195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l 270 (405)
..++.|+..+ .++++.++..++|+|..+.. ...++.|..+++++|+.++..++++|..+
T Consensus 73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 2467888888 67889999999999998863 35788899999988999999999988653
No 81
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.54 E-value=3.9e-06 Score=77.85 Aligned_cols=234 Identities=15% Similarity=0.141 Sum_probs=159.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCC--ChHHHHHhhCC-----------------CCHHHHHHHH
Q 015537 120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG--AVPIFVKLLYS-----------------PSDDVREQAV 180 (405)
Q Consensus 120 ~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g--~i~~L~~lL~~-----------------~~~~i~~~a~ 180 (405)
.++..|+.......+.-++.+|..+... ++.|..+.+.+ .++.++.++.. ....++.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 4555566532246677899999999887 88898888653 36666544331 1356789999
Q ss_pred HHHHHhhCCChhhHHHHHhcCCh--HHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChh----hh--hccHHHHHhhh
Q 015537 181 WALGNIAGDSPRCRDLVLSQGGL--VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD----QV--SPALPALAHLI 252 (405)
Q Consensus 181 ~~L~nl~~~~~~~~~~i~~~~~i--~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~----~~--~~~l~~L~~ll 252 (405)
.+++-++-+.+ ..+.+...+.. ..|+..+.....+.+.+.++.+|.|+....+..... .+ .++++ ++..|
T Consensus 250 l~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L 327 (480)
T 1ho8_A 250 LLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSL 327 (480)
T ss_dssp HHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHH
T ss_pred HHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHH
Confidence 99999987665 44555555533 566677767778999999999999999875322111 11 33444 44444
Q ss_pred cC---CChHHHHHHHHHHHHhcc---------------------CChhH---------HHHHHh--cCChHHHHHhcCC-
Q 015537 253 HS---NDDEVLTDACWALSYLSD---------------------GTNDK---------IQAVIE--AGVFPRLAEFLMH- 296 (405)
Q Consensus 253 ~~---~d~~v~~~a~~~l~~l~~---------------------~~~~~---------~~~~~~--~~~l~~L~~lL~~- 296 (405)
.. +|+++..+.-.....|-. .++-+ +..+.+ ..++..|+.+|.+
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 32 577776664433222211 11111 111111 1356788888963
Q ss_pred ---------CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537 297 ---------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (405)
Q Consensus 297 ---------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (405)
.++.+..-||.=||.++...+.....+-+.|+=+.++.++.++ ++.||.+|..++.-+..
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 3677888999999999999888888888889999999999999 99999999999987754
No 82
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.53 E-value=3.5e-05 Score=80.15 Aligned_cols=296 Identities=11% Similarity=0.065 Sum_probs=165.1
Q ss_pred CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHH-HHhcCCCCHHHHHHHHHHHHHHhcCC---c--hhHHHHHh
Q 015537 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV-EFLLREDYPQLQFEAAWALTNIASGT---S--EHTKVVID 157 (405)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li-~lL~~~~~~~~~~~a~~~L~ni~~~~---~--~~~~~~~~ 157 (405)
++++.+...++.++..+++. -+...+++.++++.++ .+|. + +.++..|+.||..+.... + +....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 35677778888999988764 4577888899999999 8885 3 789999999999998732 2 11111111
Q ss_pred C--CChHHH--------------HHhhCCCCHHHHHHHHHHHHHhhCC-------ChhhHHHHHhcCChHHHHHhhhCCC
Q 015537 158 H--GAVPIF--------------VKLLYSPSDDVREQAVWALGNIAGD-------SPRCRDLVLSQGGLVPLLAQLNGQP 214 (405)
Q Consensus 158 ~--g~i~~L--------------~~lL~~~~~~i~~~a~~~L~nl~~~-------~~~~~~~i~~~~~i~~L~~~l~~~~ 214 (405)
. +.++.+ .......+.+..+..+..+..+... .+..+..+. .++..|+..- ..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0 111111 1111223456666666666554421 121122211 1223344433 556
Q ss_pred chhHHHHHHHHHHHhhcCC-C-CCChhhh----hccHHHHHhhhcCCC--------------------hH-HHHHHH-HH
Q 015537 215 KLSMLRNATWTLSNFCRGK-P-QPPFDQV----SPALPALAHLIHSND--------------------DE-VLTDAC-WA 266 (405)
Q Consensus 215 ~~~~~~~a~~~l~~l~~~~-~-~~~~~~~----~~~l~~L~~ll~~~d--------------------~~-v~~~a~-~~ 266 (405)
+.++...++..++.|.+.- . ....... ..+++.++.-+..++ ++ ..-... .+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 8888888888888787632 1 1122222 334444444443221 00 000001 23
Q ss_pred HHHhccCC-hhHHHHHHhcCChHHHHHhcCC--CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcC-----
Q 015537 267 LSYLSDGT-NDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG----- 338 (405)
Q Consensus 267 l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~----- 338 (405)
|.+++.-. ++..+.+ ++.+...+.+ .++..++.+++++|.|+.+.......-.-..+++.|+.++.+
T Consensus 437 L~~l~~l~~~~~~~~~-----~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 437 LVYLTHLNVIDTEEIM-----ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHCHHHHHHHH-----HHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhccCHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence 33332211 1222222 2444444543 578999999999999997765432323333578888888864
Q ss_pred CCchhHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 339 NYKKSIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 339 ~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
+ +..++..+||+||.++. .+++.... ++..|+..|... .+.|+..|+||+.++|.
T Consensus 512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~-----~~~v~~~A~~al~~l~~ 569 (1023)
T 4hat_C 512 N-KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHET-----HEGVQDMACDTFIKIVQ 569 (1023)
T ss_dssp H-HHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCS-----CHHHHHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcC-----CHHHHHHHHHHHHHHHH
Confidence 3 45677889999999875 23433222 222333333211 24799999999999984
No 83
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.53 E-value=2.1e-06 Score=79.64 Aligned_cols=233 Identities=13% Similarity=0.149 Sum_probs=157.3
Q ss_pred HHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhc--CcHHHHHHHhcC----------------CCCHHHHHHHH
Q 015537 78 MVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRS--GVVPRFVEFLLR----------------EDYPQLQFEAA 138 (405)
Q Consensus 78 l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~--g~l~~Li~lL~~----------------~~~~~~~~~a~ 138 (405)
++..|.+ ++...+.-+++++..++.. .+....+.+. +.+|.++.+++. +...+++++++
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~--~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVI--PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTS--HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcc--hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 4444544 3455677788888888753 3444455543 246777655441 10257899999
Q ss_pred HHHHHHhcCCchhHHHHHhCCCh--HHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh-----hHHHHHhcCChHHHHHhh
Q 015537 139 WALTNIASGTSEHTKVVIDHGAV--PIFVKLLYS-PSDDVREQAVWALGNIAGDSPR-----CRDLVLSQGGLVPLLAQL 210 (405)
Q Consensus 139 ~~L~ni~~~~~~~~~~~~~~g~i--~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~-----~~~~i~~~~~i~~L~~~l 210 (405)
.|+.-++.. ++....+...++. +.|+.+++. ....+.+.++.+|.|+....+. ..+.++..++ .+++..|
T Consensus 250 l~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L 327 (480)
T 1ho8_A 250 LLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL 327 (480)
T ss_dssp HHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred HHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence 999999998 5666667666643 566666664 5789999999999999976531 1223333333 5666666
Q ss_pred hC--CCchhHHHHHHHHHHHhhc---------------------CCCCC-Chh-----------hhhccHHHHHhhhcC-
Q 015537 211 NG--QPKLSMLRNATWTLSNFCR---------------------GKPQP-PFD-----------QVSPALPALAHLIHS- 254 (405)
Q Consensus 211 ~~--~~~~~~~~~a~~~l~~l~~---------------------~~~~~-~~~-----------~~~~~l~~L~~ll~~- 254 (405)
.. ..|+++....-+....|-. ..|.. ... ....++..|+.+|.+
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 43 3466665554443322211 11111 100 114577888999973
Q ss_pred ---------CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537 255 ---------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 255 ---------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~ 314 (405)
.|+.+..-||.-|+.++...+.....+-+.|+=..++.++.+++++|+..|+.+++.+..
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 478899999999999999988888877778999999999999999999999999988764
No 84
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.41 E-value=2.9e-05 Score=79.27 Aligned_cols=299 Identities=12% Similarity=0.120 Sum_probs=210.5
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc---
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS--- 149 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~--- 149 (405)
..+..+++.+...+......++..+..++.++ ... ..+..+++..+.+.+.+.. .. +.|+.++..++....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~ 87 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGN-IIE--HDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSP 87 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSS-CSS--SSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhcc-ccc--cccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCC
Confidence 34566777777655666677888888876543 111 1222367888888887765 23 889999999995421
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (405)
Q Consensus 150 ~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l 229 (405)
..--.++ +.+|.++..+.+....++..|-.++..++..-+... + ...++.|+..|.....-..+..++.++..|
T Consensus 88 ~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~ 161 (986)
T 2iw3_A 88 SVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAM 161 (986)
T ss_dssp TTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 1222233 678999999888889999998888888875443321 1 336788999996566788999999999999
Q ss_pred hcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC--ChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHH
Q 015537 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG--TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR 307 (405)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 307 (405)
+...|......+..++|.+...+.+..++|...+..++..+|.. +.+. . ..+|.|+..+.+++. ...++.
T Consensus 162 ~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-~-----~~~~~~~~~~~~p~~--~~~~~~ 233 (986)
T 2iw3_A 162 VDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-E-----RFIPSLIQCIADPTE--VPETVH 233 (986)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-G-----GGHHHHHHHHHCTTH--HHHHHH
T ss_pred HHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-h-----hhHHHHHHHhcChhh--hHHHHH
Confidence 98654333444578899999999999999999999998888752 2222 2 457899999987744 445667
Q ss_pred HHhHhhcCCh--hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHhCcHHHHHHHHhccc
Q 015537 308 TVGNIVTGDD--MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQIQVIMHVHAFSIIVAFFFMFL 383 (405)
Q Consensus 308 ~l~nl~~~~~--~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~lL~~~~ 383 (405)
.|+.-..-.. .-+-.+ ++|.|.+-|... ...+++.++-++.|||. .+|..+...+ ..++|.+-.......
T Consensus 234 ~l~~~tfv~~v~~~~l~~----~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~ 307 (986)
T 2iw3_A 234 LLGATTFVAEVTPATLSI----MVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIA 307 (986)
T ss_dssp HHTTCCCCSCCCHHHHHH----HHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCC
T ss_pred HhhcCeeEeeecchhHHH----HHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccC
Confidence 7765543322 111112 467788888777 88999999999999997 6888766665 567788777776654
Q ss_pred ccchhhhHHHHHHHHHhh
Q 015537 384 HFFFGAIIYKLAIWLCLV 401 (405)
Q Consensus 384 ~~~~~~~vr~~A~~al~n 401 (405)
+ |++|.-|.-|+..
T Consensus 308 ~----pe~r~~~~~a~~~ 321 (986)
T 2iw3_A 308 D----PEAREVTLRALKT 321 (986)
T ss_dssp S----HHHHHHHHHHHHH
T ss_pred C----HHHHHHHHHHHHH
Confidence 4 4899988877754
No 85
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.31 E-value=1.9e-05 Score=69.73 Aligned_cols=157 Identities=13% Similarity=0.086 Sum_probs=127.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
...+++.|++++......++..|..+++.+ ...+.+++..+++..|+......+ ...+..++.+|.++... ......
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~-v~Gm~g 196 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLF-VDGMLG 196 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhc-cccccc
Confidence 578889999999999999999999977754 788899999999999999999887 89999999999999887 555555
Q ss_pred HHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--------cC--ChHHHHHhhh--CCCchhHHHH
Q 015537 155 VID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--------QG--GLVPLLAQLN--GQPKLSMLRN 221 (405)
Q Consensus 155 ~~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~--------~~--~i~~L~~~l~--~~~~~~~~~~ 221 (405)
+++ ...|..+..++.+.+..|...|+..|..++..++.....+.+ .| .+..|+.+|. .+.|.+++.+
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 554 467899999999989999999999999998776544333332 11 3678888884 2668999999
Q ss_pred HHHHHHHhhcCCC
Q 015537 222 ATWTLSNFCRGKP 234 (405)
Q Consensus 222 a~~~l~~l~~~~~ 234 (405)
+...+..+..+-|
T Consensus 277 amtLIN~lL~~ap 289 (339)
T 3dad_A 277 TVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHhcCC
Confidence 8888877766544
No 86
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.18 E-value=7.8e-05 Score=77.80 Aligned_cols=225 Identities=10% Similarity=0.041 Sum_probs=124.7
Q ss_pred CCChHHHHHHHHHHHHhhccCC--CCchHHH-HhcCcHHH----HHHHhcCC--CCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 84 SNDSGVQYECTTQFRKLLSIER--SPPIEEV-IRSGVVPR----FVEFLLRE--DYPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~~--~~~~~~~-~~~g~l~~----Li~lL~~~--~~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
+.++..+..|+.++..++.+.. ....... ....+.+. ++..|.++ ..+.+|..|+|+++.++..-+ ..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~- 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KA- 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HH-
Confidence 4567788888998888864310 1010000 00022222 33344555 138999999999999987521 11
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------hhh-HHHHHh--cCChHHHHHhhhCCC----chhHHH
Q 015537 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-------PRC-RDLVLS--QGGLVPLLAQLNGQP----KLSMLR 220 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-------~~~-~~~i~~--~~~i~~L~~~l~~~~----~~~~~~ 220 (405)
.. ..+++.++..|.++++.|+..|+++|.+++... +.+ ++.+.. ...+..|+.++.... ......
T Consensus 493 ~l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 493 QL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp HH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred HH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 22 246788888898888999999999999998631 111 122211 123445555664431 111234
Q ss_pred HHHHHHHHhhcCCCCCChhhhhccHHHHHhhhc----C-CChHHHHHHHHHHHHhccC-ChhHHHHHHhcCChHHHHHhc
Q 015537 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----S-NDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFL 294 (405)
Q Consensus 221 ~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~----~-~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL 294 (405)
.+..++..++...+.........+++.|...+. + +++.....++.+++.++.. .++... -+...++|.+...|
T Consensus 572 ~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~iL 650 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTVF 650 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHH
Confidence 555555555443222222333445555554442 2 3567777888888888765 222222 33345567777777
Q ss_pred CCCCcchHHHHHHHHhHhh
Q 015537 295 MHPSPSVLIPALRTVGNIV 313 (405)
Q Consensus 295 ~~~~~~v~~~a~~~l~nl~ 313 (405)
.....++...++.+++.+.
T Consensus 651 ~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 651 SEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HTTCTTTHHHHHHHHHHHH
T ss_pred HhhhHhhHHHHHHHHHHHH
Confidence 6555555555666655544
No 87
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.17 E-value=3.3e-05 Score=80.23 Aligned_cols=303 Identities=11% Similarity=0.025 Sum_probs=167.8
Q ss_pred CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc--hhHHHHHhCCCh
Q 015537 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS--EHTKVVIDHGAV 161 (405)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~--~~~~~~~~~g~i 161 (405)
+.++.....++.++...++. .+...++..++++.+..+|.. ++++..|+.||..+..... +.+..++..=.+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 46788889999999999863 456777888899999999864 7899999999999887543 222223322011
Q ss_pred HHHHHhhC--CCCHHHHHHHHHHHHHhh------CCCh-----hhHHHH--HhcCChHHHHHhhhCCCchhHHHHHHHHH
Q 015537 162 PIFVKLLY--SPSDDVREQAVWALGNIA------GDSP-----RCRDLV--LSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (405)
Q Consensus 162 ~~L~~lL~--~~~~~i~~~a~~~L~nl~------~~~~-----~~~~~i--~~~~~i~~L~~~l~~~~~~~~~~~a~~~l 226 (405)
...+..+. ..+.++.+..+..+..++ ...+ +.+... .-.+.++.++.++ .+++.++...++..+
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 11222222 356666554444443322 1111 111110 1124677777887 566667777666666
Q ss_pred HHhhcCC---CC--CCh----hhhhccHHHHHhhhcCCC-----h-----------HHHHHHHHHHHH-hccCChhH-HH
Q 015537 227 SNFCRGK---PQ--PPF----DQVSPALPALAHLIHSND-----D-----------EVLTDACWALSY-LSDGTNDK-IQ 279 (405)
Q Consensus 227 ~~l~~~~---~~--~~~----~~~~~~l~~L~~ll~~~d-----~-----------~v~~~a~~~l~~-l~~~~~~~-~~ 279 (405)
..+.... +. ... .....+++.++.-+..++ . +.|.... .+.. ++.-.++. ..
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~ 435 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS 435 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH
Confidence 6555321 11 111 222444454444443210 1 2344433 2222 22112221 11
Q ss_pred HHHhcCChHHHHHhcC---CCCcchHHHHHHHHhHhhcCChhhHHHH-----HhcCchHHHHHhhc-----CCCchhHHH
Q 015537 280 AVIEAGVFPRLAEFLM---HPSPSVLIPALRTVGNIVTGDDMQTQCV-----IEYQALPCLLNLLS-----GNYKKSIKK 346 (405)
Q Consensus 280 ~~~~~~~l~~L~~lL~---~~~~~v~~~a~~~l~nl~~~~~~~~~~~-----~~~g~l~~L~~ll~-----~~~~~~v~~ 346 (405)
.+.+ -+.+.+...+. +.++...+.++.+|+.++.+-......+ .-..+++.+..++. .+ ++.|+.
T Consensus 436 ~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~ 513 (980)
T 3ibv_A 436 YMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQL 513 (980)
T ss_dssp HHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHH
T ss_pred HHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHH
Confidence 1111 11223333342 3457889999999999987643211111 01124566666655 44 889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc--ccccchhhhHHHHHHHHHhhhc
Q 015537 347 EACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFM--FLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 347 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~--~~~~~~~~~vr~~A~~al~n~~ 403 (405)
.++|+++..+.--.. ....++.++..+-+ +-+.. ++.||..|++++.+||
T Consensus 514 ~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~-~~~V~~~a~~af~~f~ 565 (980)
T 3ibv_A 514 LYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNT-NERVRPRAWYLFYRFV 565 (980)
T ss_dssp HHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCC-CTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCC-ChhHHHHHHHHHHHHH
Confidence 999999999763211 23556677776655 33221 3479999999999998
No 88
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.04 E-value=0.00021 Score=74.74 Aligned_cols=252 Identities=8% Similarity=0.067 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHH
Q 015537 133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207 (405)
Q Consensus 133 ~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~ 207 (405)
.|..+..+|..++...++..-. -+++.+-..+.+ .+...++.++++++.++........ ..++.++
T Consensus 437 ~R~~~~~~l~~~~~~~~~~~l~----~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~ 507 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDYILE----ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLM 507 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHH----HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHH
Confidence 5566666777766543311111 112233333332 5778999999999999865442211 2233333
Q ss_pred Hh---hh-CCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHh
Q 015537 208 AQ---LN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 283 (405)
Q Consensus 208 ~~---l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~ 283 (405)
.+ +. .+.++.++..++|+++.++...... ......+++.++..+. +.++..|++++.+++..........+
T Consensus 508 ~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~- 582 (971)
T 2x1g_F 508 RVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA- 582 (971)
T ss_dssp HHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH-
T ss_pred HHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH-
Confidence 33 32 1348899999999999999753221 2456778888888872 78999999999999965544332222
Q ss_pred cCChHHHHHhcCCC--CcchHHHHHHHHhHhhcCCh-hhHHHHHhcCchHHHH----HhhcCCC-chhHHHHHHHHHHHH
Q 015537 284 AGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLL----NLLSGNY-KKSIKKEACWTVSNI 355 (405)
Q Consensus 284 ~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~L~----~ll~~~~-~~~v~~~a~~~L~nl 355 (405)
..++..+..++..+ +...+..++.+++.++..-+ ......++ .+++.++ .++.... ++..+.....++..+
T Consensus 583 ~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L 661 (971)
T 2x1g_F 583 DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMI 661 (971)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence 24666777777663 56788889999999986421 22221221 2333333 3333331 223344555555555
Q ss_pred hc-----CCH-----------HHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 356 TA-----GNR-----------EQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 356 ~~-----~~~-----------~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
+. +.. +... -.-..++|.+..++....+ ++.+.+.|+++++.++
T Consensus 662 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~l~~~~~---~~~v~e~~~~~~~~~~ 721 (971)
T 2x1g_F 662 STLFSSLNTDVDEQATDQPIVQPVL-LVMQRTMPIFKRIAEMWVE---EIDVLEAACSAMKHAI 721 (971)
T ss_dssp HHHHHHHTC-------------CCH-HHHHTTHHHHHHHHHHTTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCcCcccccccCCCchH-HHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHH
Confidence 42 111 1111 1235788888888865432 2479999999998854
No 89
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.01 E-value=0.00026 Score=73.98 Aligned_cols=291 Identities=10% Similarity=-0.021 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhc---------------CCCCHHHHHHHHHHHHHHhcCCc-hh
Q 015537 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL---------------REDYPQLQFEAAWALTNIASGTS-EH 151 (405)
Q Consensus 88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~---------------~~~~~~~~~~a~~~L~ni~~~~~-~~ 151 (405)
.+...++.++..++.....+ .. ....+++.+.. |. ..+.++++..|+.+|..+....+ ..
T Consensus 204 ~~~~~al~~l~~~~~~~~ip-~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~ 279 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYT-IE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHN 279 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCC-GG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGG
T ss_pred hHHHHHHHHHHHHHhhCCcC-cc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccc
Confidence 67777888887766520012 22 33456676666 41 11237899999999999988532 11
Q ss_pred HHHHHhCCChHHHHHh-------hCCCC---HHHHHHHHHHHHHhhCCChh-hHHHHH-----hc----CChHHHHHhhh
Q 015537 152 TKVVIDHGAVPIFVKL-------LYSPS---DDVREQAVWALGNIAGDSPR-CRDLVL-----SQ----GGLVPLLAQLN 211 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~l-------L~~~~---~~i~~~a~~~L~nl~~~~~~-~~~~i~-----~~----~~i~~L~~~l~ 211 (405)
....+. .+++.++.+ +...+ .+.....+..+..++..... +.+.+. .. ..++.++....
T Consensus 280 ~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~ 358 (971)
T 2x1g_F 280 YPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTD 358 (971)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHc
Confidence 111111 123333332 23334 26666666666666533221 110000 01 13344444432
Q ss_pred C----CCchhHHHHHHHHHHHhhcCC--------CCCCh----hhhhccHHHHHhhhcCC-C-------h-------HHH
Q 015537 212 G----QPKLSMLRNATWTLSNFCRGK--------PQPPF----DQVSPALPALAHLIHSN-D-------D-------EVL 260 (405)
Q Consensus 212 ~----~~~~~~~~~a~~~l~~l~~~~--------~~~~~----~~~~~~l~~L~~ll~~~-d-------~-------~v~ 260 (405)
. ..+..+...+++++..+++.. ..... .....+++.++..+..+ + + ..+
T Consensus 359 ~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R 438 (971)
T 2x1g_F 359 KPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYR 438 (971)
T ss_dssp CSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHH
T ss_pred CCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHH
Confidence 2 347889999999998887621 11111 12244455555444322 1 1 244
Q ss_pred HHHHHHHHHhccCCh-hHHHHHHhcCChHHHHHhcCC-----CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHH
Q 015537 261 TDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMH-----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334 (405)
Q Consensus 261 ~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ 334 (405)
..+..++..++.... .....+ ++.+...+.+ .++..+..++.++|.++.+........+. .+++.+..
T Consensus 439 ~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~-~l~~~l~~ 512 (971)
T 2x1g_F 439 QDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIP-RLMRVLAE 512 (971)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHH-HHHHHHHh
Confidence 555556655554332 222222 2333334432 57789999999999998765532211111 13333333
Q ss_pred hhc-CCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 335 LLS-GNYKKSIKKEACWTVSNITAG---NREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 335 ll~-~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
+.. +. ++.+|..++|+++.++.. +++.. ..+++.|+..|. +.|+..|++|+.++|
T Consensus 513 l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l-----~~vl~~l~~~l~--------~~v~~~A~~al~~l~ 571 (971)
T 2x1g_F 513 IPYEKL-NVKLLGTALETMGSYCNWLMENPAYI-----PPAINLLVRGLN--------SSMSAQATLGLKELC 571 (971)
T ss_dssp SCTTTS-CHHHHHHHHHHHHHTHHHHC----CH-----HHHHHHHHHHHH--------SSCHHHHHHHHHHHH
T ss_pred cCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHhC--------hHHHHHHHHHHHHHH
Confidence 322 34 789999999999999751 22211 134555555551 369999999999998
No 90
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.98 E-value=0.0023 Score=65.47 Aligned_cols=264 Identities=11% Similarity=0.082 Sum_probs=178.0
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCC-CCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-chh
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-SEH 151 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~-~~~ 151 (405)
.+..+.+.+...... ..|+..+..++.... .++.+. .--+.+|.++..+.+.. ..++..|..++..+...- ++.
T Consensus 55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~dk~-~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEP-YIVQLVPAICTNAGNKD-KEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHH-HHHTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCccc-chHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhCCHHH
Confidence 355666666543222 778888888874331 223332 22257899999888777 789988888887776642 333
Q ss_pred HHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhh
Q 015537 152 TKVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~ 230 (405)
. ..++|.|+..|.+. ....+..|+.++..++...+..-.. .-..++|.+...+ .+..+++...+..++..+|
T Consensus 131 ~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~ 203 (986)
T 2iw3_A 131 I-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVAL-RMPELIPVLSETM-WDTKKEVKAAATAAMTKAT 203 (986)
T ss_dssp H-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHH-HHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHG
T ss_pred H-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHH-hccchhcchHhhc-ccCcHHHHHHHHHHHHHHH
Confidence 2 24588999988764 6899999999999999765432111 1123567777777 8889999999999999999
Q ss_pred cCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHh
Q 015537 231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (405)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~ 310 (405)
.--.+.+. .+.+|.|+..+.+++. ...++..|+.-+.-..-....+ +=.+|.|..-|......+...++-++.
T Consensus 204 ~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 204 ETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp GGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred hcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEc
Confidence 86444433 5789999999977643 4455555554432221111100 012466666677778888999999999
Q ss_pred HhhcC--ChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537 311 NIVTG--DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (405)
Q Consensus 311 nl~~~--~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (405)
|+|.- ++.... ..-..++|.+.+....-.+|++|+.+..++.-|.
T Consensus 277 n~~~lv~~~~~~~-~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 277 NMCKLVEDPQVIA-PFLGKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHTTCCCHHHHH-HHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred chhhhcCCHHHHh-hhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 99963 333333 3345788888888887779999988888777773
No 91
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.97 E-value=0.00032 Score=61.99 Aligned_cols=178 Identities=12% Similarity=0.089 Sum_probs=128.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 015537 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197 (405)
Q Consensus 118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i 197 (405)
+..+++-|.+++ ..-+..++.-|..+...+.+....+++.+++..|+.+....+.+.+..++.+|+++..+.......+
T Consensus 120 a~~iiekL~~~~-~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 120 VNAILEKLYSSS-GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHCC-HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHhcCC-cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence 445666677666 7778999999999666668999999999999999999999999999999999999987644333333
Q ss_pred HhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhh-----------hccHHHHHhhhc---CCChHHHHHH
Q 015537 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV-----------SPALPALAHLIH---SNDDEVLTDA 263 (405)
Q Consensus 198 ~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-----------~~~l~~L~~ll~---~~d~~v~~~a 263 (405)
-....+..+..++ .+.+..+.+.++..|..++...+....... ...++.|+.+|+ ..|.+++.++
T Consensus 199 s~~~fI~~lyslv-~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 199 AHSDTIQWLYTLC-ASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 3555788888888 468899999999999999887532211111 123567888897 6789999999
Q ss_pred HHHHHHhccCCh--h----HHHHHHhcCChHHHHHhcCCC
Q 015537 264 CWALSYLSDGTN--D----KIQAVIEAGVFPRLAEFLMHP 297 (405)
Q Consensus 264 ~~~l~~l~~~~~--~----~~~~~~~~~~l~~L~~lL~~~ 297 (405)
...|..+..+.+ + ....+-+.|+=..+...|+..
T Consensus 278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~ 317 (339)
T 3dad_A 278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA 317 (339)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence 888877654433 2 122233334444555556543
No 92
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.97 E-value=0.0017 Score=68.37 Aligned_cols=297 Identities=10% Similarity=0.075 Sum_probs=158.9
Q ss_pred CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHH-HhcCCCCHHHHHHHHHHHHHHhcCC--ch---hHHHHHh-
Q 015537 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVE-FLLREDYPQLQFEAAWALTNIASGT--SE---HTKVVID- 157 (405)
Q Consensus 85 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~-lL~~~~~~~~~~~a~~~L~ni~~~~--~~---~~~~~~~- 157 (405)
++..++..++.++..+++. .+...+.+..+++.+++ ++. + +.++..|+.||..+.... +. ....+..
T Consensus 207 ~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l 280 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence 4567888888988888754 23455667778888884 443 4 899999999999998752 21 1111111
Q ss_pred -CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhC-------CChhhHHHHHhcCChHHHHHhhhCCCc
Q 015537 158 -HGAVPIFVK-LL-------------YSPSDDVREQAVWALGNIAG-------DSPRCRDLVLSQGGLVPLLAQLNGQPK 215 (405)
Q Consensus 158 -~g~i~~L~~-lL-------------~~~~~~i~~~a~~~L~nl~~-------~~~~~~~~i~~~~~i~~L~~~l~~~~~ 215 (405)
.+++..+.. ++ .+.+.+.....+..+..+.. ..+..+..+ ..+++.++... ..++
T Consensus 281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d 357 (1049)
T 3m1i_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE 357 (1049)
T ss_dssp HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence 122222211 11 12234444444444433321 111112211 12345555554 5568
Q ss_pred hhHHHHHHHHHHHhhc----CCCC--CChhhhhccHHHHHhhhcCC-------------------Ch---HHHHHHHHHH
Q 015537 216 LSMLRNATWTLSNFCR----GKPQ--PPFDQVSPALPALAHLIHSN-------------------DD---EVLTDACWAL 267 (405)
Q Consensus 216 ~~~~~~a~~~l~~l~~----~~~~--~~~~~~~~~l~~L~~ll~~~-------------------d~---~v~~~a~~~l 267 (405)
.++...++..+..+++ .... ........+++.++..+..+ |. .....+..+|
T Consensus 358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L 437 (1049)
T 3m1i_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL 437 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence 8888888888888877 3211 11123345555555544321 11 1122344455
Q ss_pred HHhccCChhHHHHHHhcCChHHHHHhcC--CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC----Cc
Q 015537 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN----YK 341 (405)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~----~~ 341 (405)
..++......+-.+ +.+.+-..+. ..++..+..+++++|.++.+.........-..+++.|..+.... ++
T Consensus 438 ~~l~~~~~~~~l~~----v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~ 513 (1049)
T 3m1i_C 438 VYLTHLNVIDTEEI----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNK 513 (1049)
T ss_dssp HHHHHHCHHHHHHH----HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHH
T ss_pred HHHHccCHHHHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccch
Confidence 55543222211111 2344444454 35778899999999999864432211111123455555544321 14
Q ss_pred hhHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537 342 KSIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC 404 (405)
Q Consensus 342 ~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~ 404 (405)
+.++..+||+++.++. .+++... .+++.|+..|.+. ++.|+..|++++.++|-
T Consensus 514 ~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~-----~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 514 AVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHET-----HEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSS-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHH
Confidence 5566679999998864 2333222 3455566655432 35799999999999983
No 93
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.85 E-value=0.00044 Score=72.18 Aligned_cols=286 Identities=11% Similarity=0.038 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc--hhHHHH---Hh--CCC
Q 015537 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS--EHTKVV---ID--HGA 160 (405)
Q Consensus 88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~--~~~~~~---~~--~g~ 160 (405)
.+...++.++....... . .. .....+++.+++++. + ++++..|+.++..+..... +....+ +. .+.
T Consensus 217 ~~~~~~l~~l~~wi~~~-~-~~--~~~~~ll~~l~~~l~--~-~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~ 289 (963)
T 2x19_B 217 CVRQKVLKCFSSWVQLE-V-PL--QDCEALIQAAFAALQ--D-SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGL 289 (963)
T ss_dssp HHHHHHHHHHHHHHTSS-C-CG--GGTHHHHHHHHHHTT--S-TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCC-C-Cc--ccchHHHHHHHHHhC--C-chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhh
Confidence 36666666665554321 1 11 122445777777774 3 6789999999999988532 111111 11 011
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH----h----cCChHHHHHhhhC----CCchhHHHHHHHHHHH
Q 015537 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL----S----QGGLVPLLAQLNG----QPKLSMLRNATWTLSN 228 (405)
Q Consensus 161 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~----~----~~~i~~L~~~l~~----~~~~~~~~~a~~~l~~ 228 (405)
.+.+...+...+.+.....+..+..++...+ ..+. . ...+..++..... ..+..+...++..+..
T Consensus 290 ~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~---~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~ 366 (963)
T 2x19_B 290 QEQLRQAVQNGDMETSHGICRIAVALGENHS---RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYT 366 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhH---HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHH
Confidence 2222222333455555555566665543211 1111 0 1233444444422 2355566666666666
Q ss_pred hhcCCCCC-------Ch----hhhhccHHHHHhhhcCCCh---------------HHHHHHHHHHHHhccCCh-hHHHHH
Q 015537 229 FCRGKPQP-------PF----DQVSPALPALAHLIHSNDD---------------EVLTDACWALSYLSDGTN-DKIQAV 281 (405)
Q Consensus 229 l~~~~~~~-------~~----~~~~~~l~~L~~ll~~~d~---------------~v~~~a~~~l~~l~~~~~-~~~~~~ 281 (405)
+++..... .. ..+..+++.++..+..++. +.+..+..+|..++.... ....
T Consensus 367 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~-- 444 (963)
T 2x19_B 367 LQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLS-- 444 (963)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH--
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHH--
Confidence 66521110 01 1123344444444432221 112333334444432111 1111
Q ss_pred HhcCChHHHHHhc----CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhh---cCCCchhHHHHHHHHHHH
Q 015537 282 IEAGVFPRLAEFL----MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL---SGNYKKSIKKEACWTVSN 354 (405)
Q Consensus 282 ~~~~~l~~L~~lL----~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll---~~~~~~~v~~~a~~~L~n 354 (405)
-+++.+...+ .+.++..+..+++++|.++.+..... ...++.++..+ ..+ ++.++..++|+++.
T Consensus 445 ---~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~ 515 (963)
T 2x19_B 445 ---NLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS-NVQLADTVMFTIGA 515 (963)
T ss_dssp ---HHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHH
Confidence 1223444444 55678889999999999997654211 12333333333 234 67899999999999
Q ss_pred HhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 355 ITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 355 l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
++..-..+-+. -..+++.|+..|.+ +.|+..|++++.++|
T Consensus 516 ~~~~l~~~~~~--l~~vl~~l~~~l~~-------~~V~~~A~~al~~l~ 555 (963)
T 2x19_B 516 LSEWLADHPVM--INSVLPLVLHALGN-------PELSVSSVSTLKKIC 555 (963)
T ss_dssp THHHHHHCHHH--HTTTHHHHHHHTTC-------GGGHHHHHHHHHHHH
T ss_pred HHHHHHhCHHH--HHHHHHHHHHHhCC-------chHHHHHHHHHHHHH
Confidence 97521111122 24778888887743 379999999999998
No 94
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.84 E-value=0.00078 Score=70.25 Aligned_cols=221 Identities=12% Similarity=0.074 Sum_probs=126.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC-----CChH----HHHHhhCCC---CHHHHHHHHHHHHHhhCCChhhH
Q 015537 127 REDYPQLQFEAAWALTNIASGTSEHTKVVIDH-----GAVP----IFVKLLYSP---SDDVREQAVWALGNIAGDSPRCR 194 (405)
Q Consensus 127 ~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~-----g~i~----~L~~lL~~~---~~~i~~~a~~~L~nl~~~~~~~~ 194 (405)
+.+ ...+..|+.+++.++.+...... .... ...+ .++..|.++ ++.++..++|+++.++..-+ .
T Consensus 416 ~~~-w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~ 491 (960)
T 1wa5_C 416 SKN-WKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--K 491 (960)
T ss_dssp --C-HHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--H
T ss_pred chh-HHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--H
Confidence 344 68899999999999864211100 0000 1222 233344555 89999999999999986532 1
Q ss_pred HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC-------CC----ChhhhhccHHHHHhhhcCCC---h--H
Q 015537 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-------QP----PFDQVSPALPALAHLIHSND---D--E 258 (405)
Q Consensus 195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-------~~----~~~~~~~~l~~L~~ll~~~d---~--~ 258 (405)
+. -..+++.+++.| .+++..++..|+++|.+++.... .. -......+++.|..++.... + .
T Consensus 492 ~~--l~~~l~~l~~~L-~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~ 568 (960)
T 1wa5_C 492 AQ--LIELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLA 568 (960)
T ss_dssp HH--HHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHT
T ss_pred HH--HHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccc
Confidence 11 122567778887 66789999999999999997421 11 11223556666667776641 1 1
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc----CC-CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHH
Q 015537 259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL----MH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLL 333 (405)
Q Consensus 259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL----~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~ 333 (405)
....++.++..++....+....... .+++.++..+ .+ .++.....++.+|+.++.........-+...++|.+.
T Consensus 569 ~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~ 647 (960)
T 1wa5_C 569 ENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFL 647 (960)
T ss_dssp SCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 2234445555443221111110110 1234444443 22 3445666789999998876332222234446788888
Q ss_pred HhhcCCCchhHHHHHHHHHHHHh
Q 015537 334 NLLSGNYKKSIKKEACWTVSNIT 356 (405)
Q Consensus 334 ~ll~~~~~~~v~~~a~~~L~nl~ 356 (405)
.++... ......++.-+++.+.
T Consensus 648 ~iL~~~-~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 648 TVFSED-IQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHTT-CTTTHHHHHHHHHHHH
T ss_pred HHHHhh-hHhhHHHHHHHHHHHH
Confidence 888776 5666767666666664
No 95
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00049 Score=60.65 Aligned_cols=191 Identities=11% Similarity=0.084 Sum_probs=127.1
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCch-HHHH--hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS 149 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~--~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~ 149 (405)
..+| +-+.|.|.++..+.+|+..+.+++........ +... -....+.+...+.+.+ ..++..++.++..++....
T Consensus 10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence 3456 66889999999999999999998764311111 1111 1234566677887777 8999999999998876321
Q ss_pred h-----hHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHH
Q 015537 150 E-----HTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT 223 (405)
Q Consensus 150 ~-----~~~~~~~~g~i~~L~~-lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~ 223 (405)
. ......-..++|.|+. .|.+..+.++..+..++..++...... .. .++.++..+ .+.++.++..++
T Consensus 88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l 160 (278)
T 4ffb_C 88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAA 160 (278)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHH
Confidence 1 1111122246777775 578888999999999888876432211 11 234555666 788999999888
Q ss_pred HHHHHhhcCCCC--CC-hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 015537 224 WTLSNFCRGKPQ--PP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (405)
Q Consensus 224 ~~l~~l~~~~~~--~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (405)
..|..+...... .. ...+..+++.+..++.+.|+.|+..|..++..+-.
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 888887664321 11 22334566778888999999999999999887653
No 96
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.67 E-value=0.025 Score=59.02 Aligned_cols=293 Identities=12% Similarity=0.100 Sum_probs=157.3
Q ss_pred CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHH-HHHhcCCCCHHHHHHHHHHHHHHhcCCc-hhHHHHHh--CC
Q 015537 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRF-VEFLLREDYPQLQFEAAWALTNIASGTS-EHTKVVID--HG 159 (405)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~L-i~lL~~~~~~~~~~~a~~~L~ni~~~~~-~~~~~~~~--~g 159 (405)
++++.+...++.++..+++. -++..+++.++++.+ ..+|. + +.++..|+.||..|.+... +....+.. .+
T Consensus 218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 45677778888999999865 356788889999988 46663 3 7899999999999887532 22222211 01
Q ss_pred ChHHHHHhh-------------CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc-C-------ChHHHHHhhhCCCchhH
Q 015537 160 AVPIFVKLL-------------YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-G-------GLVPLLAQLNGQPKLSM 218 (405)
Q Consensus 160 ~i~~L~~lL-------------~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~-~-------~i~~L~~~l~~~~~~~~ 218 (405)
.+..+-.++ ...+++.....+..+..+... ....+... + ++..++.+- ..++.++
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s-~~~d~ei 367 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVS-EVEETEI 367 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHT-TCSCHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHh-CCCcHHH
Confidence 122222222 112334444455555544321 11111111 1 223334333 5678888
Q ss_pred HHHHHHHHHHhhcC----CC-----CC------------ChhhhhccHHH----HHhhhcCCC-----------------
Q 015537 219 LRNATWTLSNFCRG----KP-----QP------------PFDQVSPALPA----LAHLIHSND----------------- 256 (405)
Q Consensus 219 ~~~a~~~l~~l~~~----~~-----~~------------~~~~~~~~l~~----L~~ll~~~d----------------- 256 (405)
.+.+...+..|... .+ .+ ......+++.. ++.-+..++
T Consensus 368 ~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~ 447 (1073)
T 3gjx_A 368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM 447 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence 88888777766542 11 00 01112333333 333332111
Q ss_pred ---h-----HHHHHHHHHHHHhccCC-hhHHHHHHhcCChHHHHHhcCC--CCcchHHHHHHHHhHhhcCChhhHHHHHh
Q 015537 257 ---D-----EVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIE 325 (405)
Q Consensus 257 ---~-----~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~ 325 (405)
. ++..+++ .+++.-. .+.... .++.+...+.. .++.....++|++|.|+..-....+.-.=
T Consensus 448 ~d~~~~~ly~~mrd~L---~~lt~l~~~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L 519 (1073)
T 3gjx_A 448 KDTDSINLYKNMRETL---VYLTHLDYVDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 519 (1073)
T ss_dssp SSCHHHHHHHHHHHHH---HHHHHHCHHHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred hhcchHHHHHHHHHHH---HHHhcCCHHHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH
Confidence 0 1222333 3333212 222222 23444444443 45788999999999998433322221122
Q ss_pred cCchHHHHHhhcCCC----chhHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHH
Q 015537 326 YQALPCLLNLLSGNY----KKSIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWL 398 (405)
Q Consensus 326 ~g~l~~L~~ll~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~a 398 (405)
..+++.|+.+..+.. ...++..+||++|..+. .+++.... ++..|++.+... ++.|+..|+-|
T Consensus 520 p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~-----~~~vq~aA~~a 589 (1073)
T 3gjx_A 520 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHET-----HDGVQDMACDT 589 (1073)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCC-----STTHHHHHHHH
T ss_pred HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcC-----CHHHHHHHHHH
Confidence 246777777775541 23466778899999875 34443332 334455544332 34799999999
Q ss_pred Hhhhcc
Q 015537 399 CLVTCC 404 (405)
Q Consensus 399 l~n~~~ 404 (405)
+..+|.
T Consensus 590 f~~i~~ 595 (1073)
T 3gjx_A 590 FIKIAQ 595 (1073)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999884
No 97
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.65 E-value=0.00019 Score=67.30 Aligned_cols=248 Identities=17% Similarity=0.129 Sum_probs=158.4
Q ss_pred hhhcCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCc-hHHHHhcCcHHHHHHHhcC---C------CCHHHHHHHHH
Q 015537 70 KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP-IEEVIRSGVVPRFVEFLLR---E------DYPQLQFEAAW 139 (405)
Q Consensus 70 ~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~-~~~~~~~g~l~~Li~lL~~---~------~~~~~~~~a~~ 139 (405)
+..+-...|+..|-++.+++++-|+..||.++....... ...-....+.-.|+.+|-- + --..+|+.|+.
T Consensus 171 WPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQ 250 (800)
T 3oc3_A 171 NVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAY 250 (800)
T ss_dssp SGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHH
Confidence 344456888889999999999999999999986541100 0000111344444444321 1 12579999999
Q ss_pred HHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHH
Q 015537 140 ALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219 (405)
Q Consensus 140 ~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~ 219 (405)
+|+.+ ..-+.. ..++..++..+..+..+++..++-.|..+. +-. .. -.++++.++.-| .+.|.+|+
T Consensus 251 tLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL-~~--Ld~Vv~aVL~GL-~D~DDDVR 316 (800)
T 3oc3_A 251 LLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFV-ED--KDGLCRKLVSLL-SSPDEDIK 316 (800)
T ss_dssp HHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGC-CC--HHHHHHHHHHHT-TCSSHHHH
T ss_pred HHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHH-HH--HHHHHHHHHhhc-CCcccHHH
Confidence 99999 654443 344555555557788999999999999881 111 11 133566677777 77899999
Q ss_pred HHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCC--hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC
Q 015537 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297 (405)
Q Consensus 220 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 297 (405)
..|+.+|.-++ .+ .....++..+...|.+.| ..........|+.|+..+... ......+|+|.++|.|.
T Consensus 317 AVAAetLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt 387 (800)
T 3oc3_A 317 LLSAELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP 387 (800)
T ss_dssp HHHHHHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS
T ss_pred HHHHHHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC
Confidence 99999999988 12 234566667777665533 223344455566655443211 11237899999999999
Q ss_pred CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHH-HHhhcCCCchhHHHHHHHHH
Q 015537 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL-LNLLSGNYKKSIKKEACWTV 352 (405)
Q Consensus 298 ~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L-~~ll~~~~~~~v~~~a~~~L 352 (405)
-.+||.++++++..+. ... ++..+ ..+|-.. ++.+++.+.-+.
T Consensus 388 ITSVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~-neeIl~lS~~VW 431 (800)
T 3oc3_A 388 VPEVRTSILNMVKNLS--EES---------IDFLVAEVVLIEE-KDEIREMAIKLL 431 (800)
T ss_dssp SHHHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence 9999999999998887 111 22222 2333344 677777665544
No 98
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.52 E-value=0.0029 Score=55.87 Aligned_cols=224 Identities=14% Similarity=0.156 Sum_probs=153.7
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----hHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR----CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (405)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~----~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l 229 (405)
.+...+.+..|+..|..-+-+.+..+..++.++...... ..+.+.. -.+.+..++....++++.-.+-..|..+
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 344557888899988888888999999999998865432 2223322 2333444443445677777777777777
Q ss_pred hcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc---CChHHHHHhcCCCCcchHHHHH
Q 015537 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPAL 306 (405)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v~~~a~ 306 (405)
.++..-.......+.+-.+...++.++-+|..+|..++..+.......+...+.. .++.....+|.+++.-.+..++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 7664322222334555567778888999999999999998876655544445444 3466778899999999999999
Q ss_pred HHHhHhhcCCh--h-hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHH--hCcHHHHHHH
Q 015537 307 RTVGNIVTGDD--M-QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQVIMH--VHAFSIIVAF 378 (405)
Q Consensus 307 ~~l~nl~~~~~--~-~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~--~~~i~~L~~l 378 (405)
..||.+..... . -+.++-+..-+..++.+|.+. +..++-+|..++--+.++ +++....++. ..++..|-+.
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f 309 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF 309 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 99999996432 2 233444556899999999999 999999999999888873 5554444442 4444444444
Q ss_pred Hh
Q 015537 379 FF 380 (405)
Q Consensus 379 L~ 380 (405)
..
T Consensus 310 ~~ 311 (341)
T 1upk_A 310 QN 311 (341)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 99
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.45 E-value=0.0002 Score=74.51 Aligned_cols=143 Identities=10% Similarity=0.013 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChH
Q 015537 130 YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV 204 (405)
Q Consensus 130 ~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~ 204 (405)
+...++.++|+++.|+.+-.+....-.-..+++.|+.++.. +...++..++|++|.++.--... ...+. ..+.
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~-~vl~ 543 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLR-TVIL 543 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHH-HHHH
Confidence 38999999999999998754432222222577888888863 33446667889999876321100 01111 1233
Q ss_pred HHHHhhhCCCchhHHHHHHHHHHHhhcCCCC--------CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCCh
Q 015537 205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ--------PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (405)
Q Consensus 205 ~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~--------~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (405)
.|+..+ ..+++.+...|+|++.+||..... ........++..+...+..-++.-...+..+++.+....+
T Consensus 544 ~L~~~l-~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 544 KLFEFM-HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHT-TCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHh-hcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 344444 556788999999999999985321 1112334455555555555567777888888888876543
No 100
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.43 E-value=0.0044 Score=64.58 Aligned_cols=219 Identities=14% Similarity=0.145 Sum_probs=127.8
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 015537 126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL---YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202 (405)
Q Consensus 126 ~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL---~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~ 202 (405)
.+.+ ...++.++++++.++.+-.+.. ...++.++..+ .++++.++..++|+++.++..-.... ..+ ..+
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHH
Confidence 3444 7889999999999998744311 12334444433 33578899999999999884321111 222 347
Q ss_pred hHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCC--ChHHHHHHHHHHHHhccCCh-hHHH
Q 015537 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTN-DKIQ 279 (405)
Q Consensus 203 i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~-~~~~ 279 (405)
++.++..| .+ +.++..|++++.++|+..+..-......+++.+..++... +...+..+..+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 77888877 33 7899999999999997643222233456666667777653 57788888999999876443 3222
Q ss_pred HHHhcCChHHHHHhc----CCC-CcchHH---HHHHHHhHhhcCCh---h------------------hHHHHHhcCchH
Q 015537 280 AVIEAGVFPRLAEFL----MHP-SPSVLI---PALRTVGNIVTGDD---M------------------QTQCVIEYQALP 330 (405)
Q Consensus 280 ~~~~~~~l~~L~~lL----~~~-~~~v~~---~a~~~l~nl~~~~~---~------------------~~~~~~~~g~l~ 330 (405)
..++ .+++.+...+ ..+ +++.+. ..+.+|+.+..+-. . ..-..+...+++
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 2221 2344444433 222 333332 44555555443210 0 001112223556
Q ss_pred HHHHhhcCC-CchhHHHHHHHHHHHHh
Q 015537 331 CLLNLLSGN-YKKSIKKEACWTVSNIT 356 (405)
Q Consensus 331 ~L~~ll~~~-~~~~v~~~a~~~L~nl~ 356 (405)
.+..++... .++.+.+.+|.+++.++
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~ 713 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSV 713 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 665555421 25677888887777764
No 101
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.43 E-value=0.062 Score=56.50 Aligned_cols=320 Identities=10% Similarity=0.076 Sum_probs=162.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcc----CCC-Cch-------HHHHh--cCcHHHHHHHhcCCCCHHHHHHHHH
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSI----ERS-PPI-------EEVIR--SGVVPRFVEFLLREDYPQLQFEAAW 139 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~----~~~-~~~-------~~~~~--~g~l~~Li~lL~~~~~~~~~~~a~~ 139 (405)
-++.+++.++ .++.....++..|..+... ... ... +.+.. ..+++.+..++....++.++..++.
T Consensus 139 ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~ 217 (1049)
T 3m1i_C 139 FIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLE 217 (1049)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4788888886 4555555555555555311 000 000 11221 1234455566655444789999999
Q ss_pred HHHHHhcCCchhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCC--hh---hHHHHHh--cCChHHHHH---
Q 015537 140 ALTNIASGTSEHTKVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDS--PR---CRDLVLS--QGGLVPLLA--- 208 (405)
Q Consensus 140 ~L~ni~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~~--~~---~~~~i~~--~~~i~~L~~--- 208 (405)
++.+...--+ ...+.+...++.++ .++. ++.++..++.+|..+.... +. ....+.. .+.+..+..
T Consensus 218 ~l~~~l~wi~--~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~ 293 (1049)
T 3m1i_C 218 SLLRYLHWIP--YRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVM 293 (1049)
T ss_dssp HHHHHTTTSC--THHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhCC--HHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhC
Confidence 9988766322 23355667777777 3443 7899999999999998552 21 1111111 111221111
Q ss_pred --------hh--hCCCchhHHHHHHHHHHHhhcCC------CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 015537 209 --------QL--NGQPKLSMLRNATWTLSNFCRGK------PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (405)
Q Consensus 209 --------~l--~~~~~~~~~~~a~~~l~~l~~~~------~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (405)
.+ ..+.+.+.....+..+..+.... +......+..+++.++.....+|.++...++.....++.
T Consensus 294 p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~ 373 (1049)
T 3m1i_C 294 PVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVA 373 (1049)
T ss_dssp CTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 11 12335555556666665443211 111122335567777777777788888888766666654
Q ss_pred ----C--ChhHHHHHHhcCChHHHHHhcCCCCc----------------------chHHHHHHHHhHhhcCChhhHHHHH
Q 015537 273 ----G--TNDKIQAVIEAGVFPRLAEFLMHPSP----------------------SVLIPALRTVGNIVTGDDMQTQCVI 324 (405)
Q Consensus 273 ----~--~~~~~~~~~~~~~l~~L~~lL~~~~~----------------------~v~~~a~~~l~nl~~~~~~~~~~~~ 324 (405)
. .......++ ..+++.++..+..++. ..+..+..+|..++.-.....-.
T Consensus 374 ~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~-- 450 (1049)
T 3m1i_C 374 DLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEE-- 450 (1049)
T ss_dssp HHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHH--
T ss_pred HHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHH--
Confidence 1 111112111 1234455555432210 11223444555554322211111
Q ss_pred hcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537 325 EYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 325 ~~g~l~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~ 403 (405)
-+++.+...+.+ ..+++.++.++|+++.++.+.......-.-..+++.|..+.........++.++..++|+++.+|
T Consensus 451 --~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~ 528 (1049)
T 3m1i_C 451 --IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYP 528 (1049)
T ss_dssp --HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCH
T ss_pred --HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHH
Confidence 124445555543 23788999999999999764322211111122444444432211101124567768999999775
No 102
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.0063 Score=53.43 Aligned_cols=189 Identities=12% Similarity=0.139 Sum_probs=125.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH--HHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh--
Q 015537 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT--KVVID--HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-- 191 (405)
Q Consensus 118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~--~~~~~--~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~-- 191 (405)
+| |-+-|.+.+ ...|.+|+..|..+....+... ..... ....+.+-..+.+.+..++..++.++..++....
T Consensus 12 lp-l~e~l~sk~-WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 12 LP-LEERLTYKL-WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CC-HHHHTTCSS-HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred CC-HHHhcccCc-HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 44 556777888 8999999999988776533221 11111 1345667778889999999999999998874321
Q ss_pred ---hhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHH
Q 015537 192 ---RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS 268 (405)
Q Consensus 192 ---~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~ 268 (405)
.......-..+++.|+.....+....++..+..++..++..... ...+++.+...+.+.++.++..++..|.
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11111112235666776522677888888888888887765311 1234677788889999999999999888
Q ss_pred HhccC--Chh-HHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537 269 YLSDG--TND-KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 269 ~l~~~--~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~ 314 (405)
.+... ... .....+ ..+++.+..+|.+.++.||..|..+++.+..
T Consensus 165 ~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 87532 111 111111 1345678888999999999999999988864
No 103
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.27 E-value=0.0076 Score=52.00 Aligned_cols=199 Identities=14% Similarity=0.051 Sum_probs=123.2
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh---hCCCchhHHHHHHHHHHHhh----cCCCC
Q 015537 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL---NGQPKLSMLRNATWTLSNFC----RGKPQ 235 (405)
Q Consensus 163 ~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l---~~~~~~~~~~~a~~~l~~l~----~~~~~ 235 (405)
.+...|.+.+..-+..++..|.......+ +.+.. .++.+++-+ ..+++..+...++.+|..+. .....
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34445555555555556665555443332 12111 222232221 14567777777777777663 32222
Q ss_pred CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcC
Q 015537 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315 (405)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 315 (405)
........++|.|+.-+-++.+.++..+-.++..+..-.+. ..+++.++.-+.+.++..+..++..++.+...
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 22233467889999988888888988887777665431111 12457788888999999999999999998853
Q ss_pred ChhhHHHHHhcCch---HHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh
Q 015537 316 DDMQTQCVIEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFF 380 (405)
Q Consensus 316 ~~~~~~~~~~~g~l---~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~ 380 (405)
.... ....+ +.+..++.+. +..||..|.-++.-+.....+.+...+ .++-+.-.+++.
T Consensus 198 ~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~~~Gd~v~k~l-g~L~~~~~~~l~ 258 (266)
T 2of3_A 198 AGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFKFEGDQMWKAA-GRMADKDKSLVE 258 (266)
T ss_dssp HCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHHHHTTHHHHHH-CCCCHHHHHHHH
T ss_pred cCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHH-hcCCHHHHHHHH
Confidence 2211 13468 9999999999 999999999999977653223233333 234455555543
No 104
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.19 E-value=0.028 Score=49.62 Aligned_cols=242 Identities=12% Similarity=0.115 Sum_probs=163.8
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH----HHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHH
Q 015537 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT----KVVID-HGAVPIFVKLLYSPSDDVREQAVWALG 184 (405)
Q Consensus 110 ~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~----~~~~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~ 184 (405)
+++...+++..|+..|..=+ -+.+..++.++.++.......+ ..+.. ..++..|+..-. ++++.-.+-..|.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~-fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLID-FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSC-HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCC-chhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHH
Confidence 34566788999999998877 7889999999999988654322 22332 133344444333 5555556666666
Q ss_pred HhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhh----hccHHHHHhhhcCCChHHH
Q 015537 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV----SPALPALAHLIHSNDDEVL 260 (405)
Q Consensus 185 nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~----~~~l~~L~~ll~~~d~~v~ 260 (405)
..+.+.. ....++..+.+-.+.+.+ ..++-++...|..++..+-..+........ .........++.+++--++
T Consensus 149 ecir~e~-la~~iL~~~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk 226 (341)
T 1upk_A 149 ECIRHEP-LAKIILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK 226 (341)
T ss_dssp HHHTSHH-HHHHHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHhHH-HHHHHhccHHHHHHHHHh-cCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence 6665554 556666777777888888 788999999999999887665432222222 4566677789999999999
Q ss_pred HHHHHHHHHhccCCh---hHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh---hhHHHHHh--cCchHHH
Q 015537 261 TDACWALSYLSDGTN---DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD---MQTQCVIE--YQALPCL 332 (405)
Q Consensus 261 ~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~---~~~~~~~~--~g~l~~L 332 (405)
..++..|+.+..... -...++-+..-+..++.+|++.+..++..|..++--+++... .....++. ..++..|
T Consensus 227 RQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl 306 (341)
T 1upk_A 227 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFL 306 (341)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHH
Confidence 999999999875422 233344444668899999999999999999999888876543 22332332 2366666
Q ss_pred HHhhcCC-CchhHHHHHHHHHHHHh
Q 015537 333 LNLLSGN-YKKSIKKEACWTVSNIT 356 (405)
Q Consensus 333 ~~ll~~~-~~~~v~~~a~~~L~nl~ 356 (405)
..+..+. .|.....+=.+.+..|.
T Consensus 307 ~~f~~d~~eDeqF~dEK~~lI~~I~ 331 (341)
T 1upk_A 307 SKFQNDRTEDEQFNDEKTYLVKQIR 331 (341)
T ss_dssp HHTTTTC-CCSHHHHHHHHHHHHHH
T ss_pred HhCCCCCcchhhHHHHHHHHHHHHH
Confidence 6666654 35666666555555553
No 105
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.17 E-value=0.015 Score=60.37 Aligned_cols=255 Identities=12% Similarity=0.061 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHH-hCC----ChHHHHHhhC-----CCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 015537 131 PQLQFEAAWALTNIASGTSEHTKVVI-DHG----AVPIFVKLLY-----SPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200 (405)
Q Consensus 131 ~~~~~~a~~~L~ni~~~~~~~~~~~~-~~g----~i~~L~~lL~-----~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~ 200 (405)
....+.++.+|+.++.+-......+. ... +++.+..++. .+++.++..++|+++..+..-.. ..
T Consensus 457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~ 530 (980)
T 3ibv_A 457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ES 530 (980)
T ss_dssp HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CC
T ss_pred HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------Cc
Confidence 67789999999999887443221110 011 3455555554 57899999999999998754221 23
Q ss_pred CChHHHHHhhhC-----CCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC-----CCh-------------
Q 015537 201 GGLVPLLAQLNG-----QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-----NDD------------- 257 (405)
Q Consensus 201 ~~i~~L~~~l~~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-----~d~------------- 257 (405)
..+++++..+.. +++..++..++.++.++|+.....-......++..+..++.. .+.
T Consensus 531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~ 610 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRN 610 (980)
T ss_dssp TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHT
T ss_pred hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhccc
Confidence 456777776644 467889999999999999976443333445566666555542 111
Q ss_pred ---HHHHHHHHHHHHhccC---ChhHHHHHHhcCChHHHHH----hcCCC----Ccc-hHHHHHHHHhHhhcCChh----
Q 015537 258 ---EVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAE----FLMHP----SPS-VLIPALRTVGNIVTGDDM---- 318 (405)
Q Consensus 258 ---~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~----lL~~~----~~~-v~~~a~~~l~nl~~~~~~---- 318 (405)
+-+.....+++.+... +.+.....++ .+++.++. .+... +.. .....+.++|+++.+-+.
T Consensus 611 ~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~ 689 (980)
T 3ibv_A 611 SDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSE 689 (980)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-C
T ss_pred CCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCC
Confidence 1244455566665522 2332222222 23333333 33222 111 122467778888865421
Q ss_pred ---hHHHHHhcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHH
Q 015537 319 ---QTQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKL 394 (405)
Q Consensus 319 ---~~~~~~~~g~l~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~ 394 (405)
....+ ..+.+.+...+.. +.+..|+..++.++..+...-...+ ...+|.++..|-..-+. .=-..
T Consensus 690 ~~p~~~~f--~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~-----~p~lp~~i~~ll~~~~~----~e~~~ 758 (980)
T 3ibv_A 690 EVAWLASF--NKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDM-----LPKVPQLISILLNSIDM----NELVD 758 (980)
T ss_dssp CCSHHHHH--HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHH-----TTTHHHHHHHHHHHCCT----TTHHH
T ss_pred CCcHHHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhH-----HHHHHHHHHHHHhcCCH----HHHHH
Confidence 11111 1345566566652 2278999999999999987544432 46677777766532111 22345
Q ss_pred HHHHHhhhc
Q 015537 395 AIWLCLVTC 403 (405)
Q Consensus 395 A~~al~n~~ 403 (405)
..|.++.++
T Consensus 759 fL~l~~qli 767 (980)
T 3ibv_A 759 VLSFISQLI 767 (980)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 556665543
No 106
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.16 E-value=0.003 Score=59.48 Aligned_cols=215 Identities=13% Similarity=0.075 Sum_probs=140.6
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC--CChHHHHHhhC-C------C---CHHHHHHHHHHHH
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--GAVPIFVKLLY-S------P---SDDVREQAVWALG 184 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~--g~i~~L~~lL~-~------~---~~~i~~~a~~~L~ 184 (405)
+...|+.-|-++. .++|.-|+.+|..+.............. .+.-.|+.+|. + + -..||+.|+.+||
T Consensus 175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 4556666666677 8999999999999876321100000111 22222222221 1 1 2468999999999
Q ss_pred HhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHH
Q 015537 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDAC 264 (405)
Q Consensus 185 nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~ 264 (405)
.+ ..-+.- ..++..++..+ ..+.-+++.-++-.|.++..--. ...++++.++..|.+.|++|+..|+
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLKEFVE-----DKDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTGGGCC-----CHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHHHHHH-----HHHHHHHHHHhhcCCcccHHHHHHH
Confidence 99 654432 33455555444 56678899999999998811111 1578889999999999999999999
Q ss_pred HHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCc--chHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCch
Q 015537 265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP--SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK 342 (405)
Q Consensus 265 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~--~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~ 342 (405)
.+|.-++ .++.... ++..+.+.|.+-++ ......+..|+.+++.+... -.+...+|.|..++.++ -+
T Consensus 321 etLiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT 389 (800)
T 3oc3_A 321 ELLCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP 389 (800)
T ss_dssp HHHTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred HHhhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence 9999988 3333332 34556666644322 23445667777777655321 12347899999999999 99
Q ss_pred hHHHHHHHHHHHHh
Q 015537 343 SIKKEACWTVSNIT 356 (405)
Q Consensus 343 ~v~~~a~~~L~nl~ 356 (405)
.||+.+..+|..+.
T Consensus 390 SVR~AVL~TL~tfL 403 (800)
T 3oc3_A 390 EVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998876
No 107
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.13 E-value=0.0099 Score=51.26 Aligned_cols=179 Identities=11% Similarity=0.054 Sum_probs=114.4
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh----CCChhhHHH
Q 015537 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA----GDSPRCRDL 196 (405)
Q Consensus 121 Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~----~~~~~~~~~ 196 (405)
+...|-+.+ ..-+..|+..|......+++.....++ .+++.+.--+.++++.+...++.+|..+. ..+....+.
T Consensus 51 ~~~~lfs~d-~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 51 LMSQLFHKD-FKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHTCSC-HHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHhcCCC-HHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 333344444 566666666666654433322211111 12333333334678888888888888764 211111111
Q ss_pred HHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChh
Q 015537 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (405)
Q Consensus 197 i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (405)
-. .-.+|.|+..+ .+....++..+-.++..++.-. -...+++.+...+++.+..++..++..+.++.....-
T Consensus 129 ea-~~~lP~LveKl-Gd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 129 EV-SAFVPYLLLKT-GEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HH-HHHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HH-HHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 11 12578888888 7777778877777776666421 1245778888888999999999999999998643221
Q ss_pred HHHHHHhcCCh---HHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537 277 KIQAVIEAGVF---PRLAEFLMHPSPSVLIPALRTVGNIVT 314 (405)
Q Consensus 277 ~~~~~~~~~~l---~~L~~lL~~~~~~v~~~a~~~l~nl~~ 314 (405)
. ....+ +.+..++.+.+..||..|+.++..+-.
T Consensus 201 ~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 201 S-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp G-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred C-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 1 23568 999999999999999999999986654
No 108
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.07 E-value=0.00055 Score=58.68 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=38.7
Q ss_pred HhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCc
Q 015537 249 AHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA 328 (405)
Q Consensus 249 ~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~ 328 (405)
..+++++++.|+..++..+ ..+.|..++.++++.|+..+...++
T Consensus 176 ~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~~l~------------------ 219 (244)
T 1lrv_A 176 GLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVEHAS------------------ 219 (244)
T ss_dssp GGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHHHSC------------------
T ss_pred HHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHcCC------------------
Confidence 3455556666666665431 1245666677777777777766653
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHH
Q 015537 329 LPCLLNLLSGNYKKSIKKEACWTV 352 (405)
Q Consensus 329 l~~L~~ll~~~~~~~v~~~a~~~L 352 (405)
.+.|..+ .++ ++.||..+.-.|
T Consensus 220 ~~~L~~L-~D~-~~~VR~aa~~~L 241 (244)
T 1lrv_A 220 LEALREL-DEP-DPEVRLAIAGRL 241 (244)
T ss_dssp HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred HHHHHHc-cCC-CHHHHHHHHHHh
Confidence 2344444 665 778877775433
No 109
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.94 E-value=0.001 Score=56.94 Aligned_cols=165 Identities=15% Similarity=0.078 Sum_probs=101.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 015537 120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS 199 (405)
Q Consensus 120 ~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~ 199 (405)
.|..++++++ +.++..++..| ..+.|..++.++++.|+..++..+ .
T Consensus 78 ~l~~L~~D~~-~~VR~~aA~~L------------------~~~~L~~ll~D~d~~VR~~aA~~l---~------------ 123 (244)
T 1lrv_A 78 ALTPLIRDSD-EVVRRAVAYRL------------------PREQLSALMFDEDREVRITVADRL---P------------ 123 (244)
T ss_dssp GGGGGTTCSS-HHHHHHHHTTS------------------CSGGGGGTTTCSCHHHHHHHHHHS---C------------
T ss_pred HHHHHccCcC-HHHHHHHHHHC------------------CHHHHHHHHcCCCHHHHHHHHHhC---C------------
Confidence 3444555555 67777766432 124566677777888887766632 1
Q ss_pred cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHH
Q 015537 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279 (405)
Q Consensus 200 ~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~ 279 (405)
...+..++ ++++..|+..++..+ + .+.+..+++++++.|+..++..+ .
T Consensus 124 ---~~~L~~L~-~D~d~~VR~~aA~~l-------~----------~~~l~~l~~D~d~~VR~~aa~~l---~-------- 171 (244)
T 1lrv_A 124 ---LEQLEQMA-ADRDYLVRAYVVQRI-------P----------PGRLFRFMRDEDRQVRKLVAKRL---P-------- 171 (244)
T ss_dssp ---TGGGGGGT-TCSSHHHHHHHHHHS-------C----------GGGGGGTTTCSCHHHHHHHHHHS---C--------
T ss_pred ---HHHHHHHH-cCCCHHHHHHHHHhc-------C----------HHHHHHHHcCCCHHHHHHHHHcC---C--------
Confidence 11233333 777888888777621 0 11344566777888888877641 1
Q ss_pred HHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 015537 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (405)
Q Consensus 280 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 359 (405)
-+.+..++.++++.|+..++..+ ..+.|..++.++ ++.||..++..++
T Consensus 172 -------~~ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~-d~~VR~~aa~~l~------ 219 (244)
T 1lrv_A 172 -------EESLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDP-DWTVRLAAVEHAS------ 219 (244)
T ss_dssp -------GGGGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCS-SHHHHHHHHHHSC------
T ss_pred -------HHHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCC-CHHHHHHHHHcCC------
Confidence 13455677888888888877542 134577788888 9999999887753
Q ss_pred HHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537 360 REQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCL 400 (405)
Q Consensus 360 ~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~ 400 (405)
.+.| ..| .+. ++.||..|.-.||
T Consensus 220 ------------~~~L-~~L-~D~----~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 ------------LEAL-REL-DEP----DPEVRLAIAGRLG 242 (244)
T ss_dssp ------------HHHH-HHC-CCC----CHHHHHHHHCCC-
T ss_pred ------------HHHH-HHc-cCC----CHHHHHHHHHHhC
Confidence 1233 335 333 3589998876654
No 110
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.76 E-value=0.045 Score=45.83 Aligned_cols=144 Identities=15% Similarity=0.045 Sum_probs=105.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CChhhHH
Q 015537 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAG-DSPRCRD 195 (405)
Q Consensus 118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~i~~~a~~~L~nl~~-~~~~~~~ 195 (405)
++.+..+.+++. .++|..|+..|+.. .. . ..+++.+.. +-.+++-.|++.+..+++.++. ..++.
T Consensus 73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~-~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SK-D--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHT-TT-S--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHhCcc-hHHHHHHHHHHHhc-cC-c--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 455566666666 79999999999887 31 1 124666666 5566889999999999999984 33321
Q ss_pred HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCCh
Q 015537 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (405)
Q Consensus 196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (405)
.++.+.... .+++..+++.++..+.-.+.. + ........++|.|..+..+++.-|+....|.|..++..++
T Consensus 140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 345555555 899999999999888765543 2 1223335678888888888889999999999999999998
Q ss_pred hHHHHHHh
Q 015537 276 DKIQAVIE 283 (405)
Q Consensus 276 ~~~~~~~~ 283 (405)
+-+..+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87665554
No 111
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.72 E-value=0.054 Score=45.99 Aligned_cols=156 Identities=12% Similarity=0.127 Sum_probs=100.4
Q ss_pred HHHHhhcCCC-hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcC----C------CCHHHHHHHHHHHHHHh
Q 015537 77 VMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNIA 145 (405)
Q Consensus 77 ~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~----~------~~~~~~~~a~~~L~ni~ 145 (405)
.+++.|++.. +......+..|+..+..++...++.+ ..+++..|+.+|.. . .+...+..++.||..+.
T Consensus 4 ~yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm 82 (233)
T 2f31_A 4 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 82 (233)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh
Confidence 3455555532 22223445566655554433445667 46778888877753 1 12577899999999997
Q ss_pred cCCchhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHhhhC
Q 015537 146 SGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLNG 212 (405)
Q Consensus 146 ~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~i~----------~~~~i~~L~~~l~~ 212 (405)
.. ......++. .+++..|...|.++++.++..++..|+-+|..+. .. ...++ +..-+.+++..+..
T Consensus 83 n~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 161 (233)
T 2f31_A 83 NN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 161 (233)
T ss_dssp SS-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred CC-hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhc
Confidence 76 455555555 4688999999999999999999999998885443 12 33332 22345667777754
Q ss_pred CCchhHHHHHHHHHHHhhcCCC
Q 015537 213 QPKLSMLRNATWTLSNFCRGKP 234 (405)
Q Consensus 213 ~~~~~~~~~a~~~l~~l~~~~~ 234 (405)
+.+.+....++..+..+....+
T Consensus 162 ~~~~e~~~~~m~lIN~li~~~~ 183 (233)
T 2f31_A 162 GTSIALKVGCLQLINALITPAE 183 (233)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCC
T ss_pred CChHHHHHHHHHHHHHHHCCCC
Confidence 5566777777766666666643
No 112
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.71 E-value=0.034 Score=46.60 Aligned_cols=142 Identities=11% Similarity=0.057 Sum_probs=103.1
Q ss_pred HHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHh-hhcCCChHHHHHHHHHHHHhcc-CChhHHHHHH
Q 015537 205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH-LIHSNDDEVLTDACWALSYLSD-GTNDKIQAVI 282 (405)
Q Consensus 205 ~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~-ll~~~d~~v~~~a~~~l~~l~~-~~~~~~~~~~ 282 (405)
.+...|-+++..+++..++..|..+ . .....++.+.. +...+.-.|+..+..++..++. ..++.
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~----- 139 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----- 139 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-----
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-----
Confidence 4444454777779999999988877 2 12457788877 5556678899999999998874 33332
Q ss_pred hcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh--hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 015537 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD--MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (405)
Q Consensus 283 ~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~--~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 360 (405)
.++.+...+.+++..++..|...+.-.+.... ...+ -+++.|-.+..++ +..||+.++|.|..++..+|
T Consensus 140 ---~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~-----~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ---ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPN-----EAIRRIADLKEDV-SEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ---THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHH-----HHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCH
T ss_pred ---HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHH-----HHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCH
Confidence 46788899999999999988877643332211 1111 2567777777777 99999999999999999999
Q ss_pred HHHHHHHHh
Q 015537 361 EQIQVIMHV 369 (405)
Q Consensus 361 ~~~~~l~~~ 369 (405)
+-+..+++.
T Consensus 211 d~V~~~~~~ 219 (240)
T 3l9t_A 211 DLVKIELKN 219 (240)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 988877753
No 113
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=96.54 E-value=0.13 Score=47.22 Aligned_cols=158 Identities=12% Similarity=0.117 Sum_probs=109.1
Q ss_pred HHHHHhhcCCC-hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcC----------CCCHHHHHHHHHHHHHH
Q 015537 76 PVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----------EDYPQLQFEAAWALTNI 144 (405)
Q Consensus 76 ~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~----------~~~~~~~~~a~~~L~ni 144 (405)
..++..|++.- .......+..|+.-+...+..-++.++ .+++..|+.+|.. ..+...+..++.||..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 46677777653 233345677777766654334457777 6678888888852 11247889999999999
Q ss_pred hcCCchhHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHhhh
Q 015537 145 ASGTSEHTKVVIDH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLN 211 (405)
Q Consensus 145 ~~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~i~----------~~~~i~~L~~~l~ 211 (405)
... ......++.. ..+..|...|.++++.++..++..|+-+|.... .. ...++ +..-+.+++..|.
T Consensus 148 mN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 148 MNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp TSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred hcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 766 4555555554 789999999999999999999999999986543 22 33333 2344778888885
Q ss_pred CCCchhHHHHHHHHHHHhhcCCCC
Q 015537 212 GQPKLSMLRNATWTLSNFCRGKPQ 235 (405)
Q Consensus 212 ~~~~~~~~~~a~~~l~~l~~~~~~ 235 (405)
...+.+....+...+..+..+.+.
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~d 250 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAEE 250 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCC
Confidence 556777777777777777776543
No 114
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.22 E-value=0.6 Score=41.37 Aligned_cols=324 Identities=12% Similarity=0.111 Sum_probs=182.0
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhc----CCC-------CHHHHHHHHHHHHHH
Q 015537 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL----RED-------YPQLQFEAAWALTNI 144 (405)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~----~~~-------~~~~~~~a~~~L~ni 144 (405)
+.+...+...||.-++.-+..+|.....++-..++..--.|.+..++..+. ... ++.+=..-+.+|..+
T Consensus 9 QAir~WFnTpDPqrrfhMA~tiReWvrrDKlaqvDqAnlPnCiq~lLnII~DGlKPQpvQlP~sYYaQLw~~LLDIL~Rl 88 (619)
T 3c2g_A 9 QAIRLWFNTPDPMQRLHMAKTIRTWIRQDKFAQVDQANMPNCVQQILNIIYDGLKPQPVQLPISYYAQLWYNLLDILRRF 88 (619)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHHHHHTTTTSCGGGHHHHHHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhcccCcccCchHHHHHHHHHhcCCCcccccCChhHHHHHHHHHHHHHHHH
Confidence 455677888999999999999998876553333333222344555544443 221 123344444555555
Q ss_pred hcCC--chhHHHHHhC------C---ChHHHHHhhCC---CC---HHHHHHHHHHHHHhhCC--ChhhHHHHHhcC----
Q 015537 145 ASGT--SEHTKVVIDH------G---AVPIFVKLLYS---PS---DDVREQAVWALGNIAGD--SPRCRDLVLSQG---- 201 (405)
Q Consensus 145 ~~~~--~~~~~~~~~~------g---~i~~L~~lL~~---~~---~~i~~~a~~~L~nl~~~--~~~~~~~i~~~~---- 201 (405)
+... ..+...+++. | .=+.++.+++- .+ .....+....+-|+..+ .+..|..+...-
T Consensus 89 T~~~it~PyIHqvVQlF~PreNgp~dFRdLICN~iq~~~~~d~hm~~CAkQvF~Ife~ii~~~KneKLR~dFAr~~Kfek 168 (619)
T 3c2g_A 89 TFLPIISPYIHQVVQMFCPRENGPQDFRELICNLISLNWQKDPHMKHCANQVFQIFNCIIMGVKNEKLRTEFAQHLKFEK 168 (619)
T ss_dssp HHCGGGGGGHHHHHHTTSCSSSSTTSHHHHHHHHTCGGGGGSTTTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCSHH
T ss_pred hhccccchHHHHHHHHhccCCCCchhHHHHHHHhcCccccCChHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhHHHH
Confidence 5531 1122222221 1 11223333331 11 22445666777777642 344455544332
Q ss_pred ChHHHHHhhhCCC-----chhHHHHHHHHHH-----------HhhcCC-CCCCh---hhhhccHHHHHhhhcCCCh----
Q 015537 202 GLVPLLAQLNGQP-----KLSMLRNATWTLS-----------NFCRGK-PQPPF---DQVSPALPALAHLIHSNDD---- 257 (405)
Q Consensus 202 ~i~~L~~~l~~~~-----~~~~~~~a~~~l~-----------~l~~~~-~~~~~---~~~~~~l~~L~~ll~~~d~---- 257 (405)
.+..|+..+...- ++.+....-+.++ +=-... +.+.. ....+++-.--.++.-.|+
T Consensus 169 l~gtL~~yl~pq~~p~~iNPtil~~lRFiISKDt~lKd~~IWn~~~q~d~~PP~s~li~Lkgv~~~s~~~~~~~dpet~~ 248 (619)
T 3c2g_A 169 LVGTLSEYFNPQVHPGMINPAIFIIFRFIISKDTRLKDYFIWNNNPHDQPPPPTGLIIKLNAVMIGSYRLIAGQNPETLP 248 (619)
T ss_dssp HHHHHHGGGCTTSCGGGCCTHHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCCTTSHHHHHHHHHHHHHHHHTTCCGGGGG
T ss_pred HHHHHHHhcCCCCCccccCchhhhhhHhhhcccceeccceeeCCccccCCCCChhHHHHHHHHHHhhHHhhcCCChhccc
Confidence 2344444442221 2333322222221 111111 11111 1123333333334433332
Q ss_pred ---H------HHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCc
Q 015537 258 ---E------VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA 328 (405)
Q Consensus 258 ---~------v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~ 328 (405)
+ |...+... .++.-++.+.++-++...++..+......++.++....+..|-.++....-.... -...
T Consensus 249 qNpel~~LiQVvtR~FDL-L~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~ 325 (619)
T 3c2g_A 249 QNPELAHLIQVIIRTFDL-LGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENI 325 (619)
T ss_dssp GCHHHHHHHHHHHHHHHH-HHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTH
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--cccc
Confidence 2 33333333 3455577778888999999999999999999999999999987776433211110 1246
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhccccc--chhhhHHHHHHHHHhhh
Q 015537 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHF--FFGAIIYKLAIWLCLVT 402 (405)
Q Consensus 329 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~--~~~~~vr~~A~~al~n~ 402 (405)
+|.++..+.-..+.++.......|+|..++.....+..+..|.++.|.+.+..+..- +.+..=|+-||-.++|+
T Consensus 326 LPFi~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 326 LPFLLRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred chHHHHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 788888887544888999999999999999888888888999999999988654322 22345677788777775
No 115
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.01 E-value=0.051 Score=45.90 Aligned_cols=194 Identities=13% Similarity=0.130 Sum_probs=127.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHH--hcCcHHHHHHHhcCC-------C-C---HHHHHHHHHHH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLRE-------D-Y---PQLQFEAAWAL 141 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~--~~g~l~~Li~lL~~~-------~-~---~~~~~~a~~~L 141 (405)
+-.++..|. +++.+..|+..|.+-- +.-+....++ .-|.+..|++=+-+- . . +.-...|+..|
T Consensus 5 i~qli~~L~--~p~~Re~AL~eLsk~R--e~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLl 80 (268)
T 2fv2_A 5 IYQWINELS--SPETRENALLELSKKR--ESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL 80 (268)
T ss_dssp HHHHHHHTS--STTTHHHHHHHHHHHT--TTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CchhHHHHHHHHHHhh--hccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHH
Confidence 344555554 4566888988887742 2233333322 457777765433221 1 0 11234555566
Q ss_pred HHHhcCCchhHHHHHhCCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHhhhCCCc
Q 015537 142 TNIASGTSEHTKVVIDHGAVPIFVKLLYSP-----SDDVREQAVWALGNIAG-DSPRCRDLVLSQGGLVPLLAQLNGQPK 215 (405)
Q Consensus 142 ~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~-----~~~i~~~a~~~L~nl~~-~~~~~~~~i~~~~~i~~L~~~l~~~~~ 215 (405)
.-+|++ ++.|..+++.++.-+|..+|... .+.++-.+++++|.+.. ++++.-..+++.++++..++.+ ..++
T Consensus 81 QcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim-e~Gs 158 (268)
T 2fv2_A 81 QCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM-ESGS 158 (268)
T ss_dssp HHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH-HHSC
T ss_pred HHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH-hhcc
Confidence 667776 99999999999888888888753 35789999999999884 5677778888999999999999 6677
Q ss_pred hhHHHHHHHHHHHhhcCCCC--------CChhhhhccHHH-HHhhhcCCChHHHHHHHHHHHHhccCC
Q 015537 216 LSMLRNATWTLSNFCRGKPQ--------PPFDQVSPALPA-LAHLIHSNDDEVLTDACWALSYLSDGT 274 (405)
Q Consensus 216 ~~~~~~a~~~l~~l~~~~~~--------~~~~~~~~~l~~-L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (405)
+-.+..|++.+..+-.++.. ..+..+..++.. +..+....++.+...++++-..|+++.
T Consensus 159 elSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 159 ELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 77788888877776654311 112222333432 233445667888888888888888654
No 116
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=96.01 E-value=0.49 Score=49.60 Aligned_cols=244 Identities=15% Similarity=0.117 Sum_probs=146.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCc---HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV---VPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~---l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~ 150 (405)
.+-.|++.|+.-+.+........+..- ...+....+.+...|- +..+.+++.+.. -. ..+|+++|...... ..
T Consensus 312 ~f~~Lv~~lR~~~~e~L~~l~~~~~~~-~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~-l~-~~ea~~~l~~~~~~-~~ 387 (1056)
T 1lsh_A 312 KFLRLTAFLRNVDAGVLQSIWHKLHQQ-KDYRRWILDAVPAMATSEALLFLKRTLASEQ-LT-SAEATQIVASTLSN-QQ 387 (1056)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHTTS-HHHHHHHHHHHHHHCSHHHHHHHHHHHHTTC-SC-HHHHHHHHHHHHHT-CC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcc-HHHHHHHHHHhHhcCCHHHHHHHHHHHHcCC-CC-HHHHHHHHHHhhcc-CC
Confidence 356677777776655544443333210 0000122334444453 555566776654 12 23355555443321 11
Q ss_pred hHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CChhhHHHHHhcCChHHHHHhhh---CCCchhHH
Q 015537 151 HTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLN---GQPKLSML 219 (405)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~----~~~~i~~~a~~~L~nl~~----~~~~~~~~i~~~~~i~~L~~~l~---~~~~~~~~ 219 (405)
-.. ..+..+..++.+ .++.+++.++-+++.+.. +.+.|.. ..++++.+.+. ...+..-.
T Consensus 388 Pt~-----e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~ 457 (1056)
T 1lsh_A 388 ATR-----ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEI 457 (1056)
T ss_dssp CCH-----HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHH
T ss_pred CCH-----HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHH
Confidence 111 245566677765 467788888888888762 2222211 23444544442 34467778
Q ss_pred HHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC-------CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHH
Q 015537 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292 (405)
Q Consensus 220 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ 292 (405)
..++.+|.|+-.. ..++.|..++.. ....++..|+|+|..++...+..++ +.+.+
T Consensus 458 ~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~ 519 (1056)
T 1lsh_A 458 VLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLP 519 (1056)
T ss_dssp HHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHH
T ss_pred HHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHH
Confidence 8899999999753 467777777742 1357889999999999877665544 56677
Q ss_pred hc--CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 015537 293 FL--MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (405)
Q Consensus 293 lL--~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 359 (405)
+. ...++++|..|+..|-. +..+ . ..+..+...+..+++.+|.....-.|.+++..+
T Consensus 520 i~~n~~e~~EvRiaA~~~Lm~--t~P~-~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 520 IFLNVAIKSELRIRSCIVFFE--SKPS-V-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHCTTSCHHHHHHHHHHHHH--TCCC-H-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HhcCCCCChHHHHHHHHHHHH--HCcC-H-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 77 45677899999888732 2222 1 235567777877668899999888999998754
No 117
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.86 E-value=0.048 Score=48.14 Aligned_cols=231 Identities=16% Similarity=0.177 Sum_probs=144.2
Q ss_pred HHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHH
Q 015537 140 ALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219 (405)
Q Consensus 140 ~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~ 219 (405)
-|.|+..+++...+-++..+++..+..+++-++.++.......|...+....-+..- -.+.++.++..+..+++.++.
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h~eDdvv 342 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIHPDDEVI 342 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccCCCcceE
Confidence 345666666888999999999999999999999999999999999987443322111 123678888888888899999
Q ss_pred HHHHHHHHHhhcCC-CCCChhhhhccHHHHHhhhcC-------CChH-------HHHHHHHHHHHhcc------------
Q 015537 220 RNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHS-------NDDE-------VLTDACWALSYLSD------------ 272 (405)
Q Consensus 220 ~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~-------~d~~-------v~~~a~~~l~~l~~------------ 272 (405)
...+..|+|...++ |-.....-.++++.|-..+.. .+.. +..++++++.++.-
T Consensus 343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~ 422 (619)
T 3c2g_A 343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKT 422 (619)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCC
T ss_pred EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCcccc
Confidence 99999999999987 545555558888887766532 1222 44445555555421
Q ss_pred -CChh--HHHHHHhcCChHHHHHhcCCCCc------chHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCc--
Q 015537 273 -GTND--KIQAVIEAGVFPRLAEFLMHPSP------SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK-- 341 (405)
Q Consensus 273 -~~~~--~~~~~~~~~~l~~L~~lL~~~~~------~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~-- 341 (405)
+..+ ++..+++..++.+|+..|+-..- +++...++.+--+.....-- ..++ ....++...
T Consensus 423 ~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~P-----kd~~----l~VtDd~rk~N 493 (619)
T 3c2g_A 423 AGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVP-----KDGV----LNVIDENRKEN 493 (619)
T ss_dssp CCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSC-----CTTG----GGCCCTTTCCC
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCc-----hhhh----ccccchhhhhh
Confidence 1111 23334555777888888865432 34555555543333211100 0111 122222111
Q ss_pred --hhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcc
Q 015537 342 --KSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIVAFFFMF 382 (405)
Q Consensus 342 --~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~lL~~~ 382 (405)
-.+..+-+|+-+.=+. ...+..+++++ ..+..|+.+++..
T Consensus 494 LvGHIciA~sWa~~Q~tNertqdTkqQLiE-R~fSLL~~LmEQc 536 (619)
T 3c2g_A 494 LIGHICAAYSWVFRQPNNTRTQSTKQQLVE-RTISLLLVLMEQC 536 (619)
T ss_dssp HHHHHHHHHHHHHHSCCCTTTHHHHHHHHH-HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhcCccccchhhHHHHHHH-HHHHHHHHHHHHh
Confidence 1345555676665543 46666777775 4677788877655
No 118
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.86 E-value=0.48 Score=41.74 Aligned_cols=173 Identities=12% Similarity=0.068 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCC----ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh
Q 015537 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG----AVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR 192 (405)
Q Consensus 118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g----~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~ 192 (405)
+..+.++++-+. +.++-++..+.-.+.+ +.....+.+.+ ++..+...+.+ ..+..+-.++.+++|+.....
T Consensus 105 l~~l~kil~WP~--~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~- 180 (304)
T 3ebb_A 105 LQILWKAINCPE--DIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA- 180 (304)
T ss_dssp HHHHHHHHTSCT--TTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred HHHHHHHHcCCH--HhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence 456666664333 4566666666665553 44444333322 22233444443 356678899999999997765
Q ss_pred hHHHHHhcCChHHHHHhhh---CCCchhHHHHHHHHHHHhhcCC-CCCChhhhhccHHHHHhhhcC-CChHHHHHHHHHH
Q 015537 193 CRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHS-NDDEVLTDACWAL 267 (405)
Q Consensus 193 ~~~~i~~~~~i~~L~~~l~---~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l 267 (405)
.++.+... ...++..+. .+.+..++..++..+.|++-.. ..........++..+..++.. .|++....++-+|
T Consensus 181 g~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 55655542 233333332 4567889999999999998753 222223334455556666643 5899999999999
Q ss_pred HHhccCChhHHHHHHhcCChHHHHHhcCC
Q 015537 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296 (405)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 296 (405)
+++...+.+..+..-..|+-..+-...+.
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 99998766544434344555555555544
No 119
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=95.83 E-value=0.3 Score=44.76 Aligned_cols=183 Identities=12% Similarity=0.116 Sum_probs=114.8
Q ss_pred HHHHHhhcCCCh-HHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcC----C------CCHHHHHHHHHHHHHH
Q 015537 76 PVMVAGVWSNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNI 144 (405)
Q Consensus 76 ~~l~~~l~s~~~-~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~----~------~~~~~~~~a~~~L~ni 144 (405)
..++..|++... ......+..|+..+..++...++.+. .+++..|+.+|.. . .+...+..++.||..+
T Consensus 7 ~~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal 85 (386)
T 2bnx_A 7 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 85 (386)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 345666665432 22233456666555544334456675 5677777777742 1 1257789999999998
Q ss_pred hcCCchhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHhhh
Q 015537 145 ASGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLN 211 (405)
Q Consensus 145 ~~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~i~----------~~~~i~~L~~~l~ 211 (405)
... ......++. .+++..+...|.++++.++..++..|+-+|..+. .. ...++ +..-+.+++..+.
T Consensus 86 mN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~ 164 (386)
T 2bnx_A 86 MNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 164 (386)
T ss_dssp TSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTS
T ss_pred hCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 776 444555554 4789999999999999999999999988886543 22 33332 2335667888885
Q ss_pred CCCchhHHHHHHHHHHHhhcCCCCCChh------hh-hccHHHHHhhhcCCChHHH
Q 015537 212 GQPKLSMLRNATWTLSNFCRGKPQPPFD------QV-SPALPALAHLIHSNDDEVL 260 (405)
Q Consensus 212 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~------~~-~~~l~~L~~ll~~~d~~v~ 260 (405)
.+.+.+....++..+..+..+.+..... .. .|+.+.+-.+-...++.+.
T Consensus 165 ~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 165 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK 220 (386)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred cCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHH
Confidence 5667788888887777777775432221 12 4555555444444455443
No 120
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.80 E-value=0.083 Score=44.63 Aligned_cols=140 Identities=12% Similarity=0.167 Sum_probs=104.8
Q ss_pred HHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC----CHHHHHHHHHHHHHHhc-CCchhHHHHHhCCChHHHH
Q 015537 91 YECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIAS-GTSEHTKVVIDHGAVPIFV 165 (405)
Q Consensus 91 ~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~----~~~~~~~a~~~L~ni~~-~~~~~~~~~~~~g~i~~L~ 165 (405)
..|+..|..+++ + .+....++++.+.-.|..+|+..+ .+.+|..++.+++.+.. ++++....+.+.+++|..+
T Consensus 74 cnaLaLlQcvAs-h-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 74 CNALALLQCVAS-H-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHH-C-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHc-C-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 445555566655 2 677888999998888888887654 25689999999999886 4567778888999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH------Hh-cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLV------LS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 166 ~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i------~~-~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
+.++.++.--+..|...+..|..++....-.. .. ..++..++..+...+++.+.++++++-..|+++
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999999886654332111 11 113444555555777888999999999999887
No 121
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.72 E-value=0.1 Score=46.10 Aligned_cols=110 Identities=12% Similarity=0.047 Sum_probs=73.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH--H
Q 015537 120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR--D 195 (405)
Q Consensus 120 ~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~--g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~--~ 195 (405)
.+...+.++..+..+.-++++++|+... +..+..+... .+++.+...+.+++..++..+...+.|++......+ +
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~ 229 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIE 229 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCch
Confidence 3445554443477799999999999887 6667666653 345556666666789999999999999984211000 1
Q ss_pred HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
.. ...+..+..++....|.+...-++-+|.+|...
T Consensus 230 ~~--~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 230 GK--AQCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HH--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 11 113344455554556888888888899998865
No 122
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.61 E-value=0.067 Score=49.55 Aligned_cols=121 Identities=15% Similarity=0.145 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHh
Q 015537 171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250 (405)
Q Consensus 171 ~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ 250 (405)
+++..+..|+..|.....+-|..++. ++..+++++ .+.|..++..++..|..+|.+ ..+..+..+|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 47889999999999999888877655 577899999 889999999999999999987 336788889999
Q ss_pred hhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (405)
Q Consensus 251 ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n 311 (405)
+|+++++.-...+-++|..+...++.. .+..+...+..+++.+|..++..|..
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHH
Confidence 999998877777777777776555432 22333333333456677776666643
No 123
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.56 E-value=2.8 Score=43.84 Aligned_cols=145 Identities=12% Similarity=0.098 Sum_probs=85.3
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCCC-hhhH
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF-VKLLYSPSDDVREQAVWALGNIAGDS-PRCR 194 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~ 194 (405)
+++.+..+|..+.++.+...++.+|+...+=- ....+++.+.++.| ..+|. ++.++..|+.||..+.+.. +.+.
T Consensus 207 Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~ 282 (1073)
T 3gjx_A 207 IFQLCQFVMENSQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYE 282 (1073)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGH
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchH
Confidence 34444555554444788888889999887742 34567888889988 46665 7789999999999998542 2222
Q ss_pred HHHHh--cCChHHHHHhh------------hCCCchhHHHHHHHHHHHhhcCCC------CCChhhhhccHHHHHhhhcC
Q 015537 195 DLVLS--QGGLVPLLAQL------------NGQPKLSMLRNATWTLSNFCRGKP------QPPFDQVSPALPALAHLIHS 254 (405)
Q Consensus 195 ~~i~~--~~~i~~L~~~l------------~~~~~~~~~~~a~~~l~~l~~~~~------~~~~~~~~~~l~~L~~ll~~ 254 (405)
+.+.. .+.+..+-.++ ....+.+.....+.++..+....- +........++..++.+...
T Consensus 283 ~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~ 362 (1073)
T 3gjx_A 283 EQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEV 362 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCC
Confidence 22211 01111111111 123355777777777776655431 01112223445556666677
Q ss_pred CChHHHHHHHH
Q 015537 255 NDDEVLTDACW 265 (405)
Q Consensus 255 ~d~~v~~~a~~ 265 (405)
+|.++...++.
T Consensus 363 ~d~ei~kitf~ 373 (1073)
T 3gjx_A 363 EETEIFKICLE 373 (1073)
T ss_dssp SCHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 78887766543
No 124
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.01 E-value=0.29 Score=51.25 Aligned_cols=134 Identities=16% Similarity=0.230 Sum_probs=86.5
Q ss_pred ccHHHHHhhhcC----CChHHHHHHHHHHHHhccC----C----hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHh
Q 015537 243 PALPALAHLIHS----NDDEVLTDACWALSYLSDG----T----NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (405)
Q Consensus 243 ~~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~~----~----~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~ 310 (405)
..+..+..++.+ .++.++..++.+++.|... . .+.++. +...+...+...+..-+..++++||
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~-----i~~~l~~~~~~~~~~~~~~~LkaLG 465 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQP-----LHDLLSQSSDRAKEEEIVLALKALG 465 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHH-----HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH-----HHHHHHHHHhcCChHHHHHHHHHhh
Confidence 345556666654 3566777777777776532 1 111121 2233444556667777888999999
Q ss_pred HhhcCChhhHHHHHhcCchHHHHHhhcC------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccc
Q 015537 311 NIVTGDDMQTQCVIEYQALPCLLNLLSG------NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLH 384 (405)
Q Consensus 311 nl~~~~~~~~~~~~~~g~l~~L~~ll~~------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~ 384 (405)
|+.. + ..++.|.+++.. +...+++..|.|+|.+++...|..++. .|+.++.+...
T Consensus 466 N~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~--------il~~i~~n~~e 526 (1056)
T 1lsh_A 466 NAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQE--------IVLPIFLNVAI 526 (1056)
T ss_dssp HHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHH--------HHHHHHHCTTS
T ss_pred ccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHH--------HHHHHhcCCCC
Confidence 9864 2 346667777642 114578899999999998877765554 45666644333
Q ss_pred cchhhhHHHHHHHHHhhhc
Q 015537 385 FFFGAIIYKLAIWLCLVTC 403 (405)
Q Consensus 385 ~~~~~~vr~~A~~al~n~~ 403 (405)
+++||-.|++.|..++
T Consensus 527 ---~~EvRiaA~~~Lm~t~ 542 (1056)
T 1lsh_A 527 ---KSELRIRSCIVFFESK 542 (1056)
T ss_dssp ---CHHHHHHHHHHHHHTC
T ss_pred ---ChHHHHHHHHHHHHHC
Confidence 4689999999998764
No 125
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=94.93 E-value=1.8 Score=39.41 Aligned_cols=235 Identities=13% Similarity=0.065 Sum_probs=118.2
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 231 (405)
....++...+-.|+.++.++|+.=++..-.+|..+-+.-...|..+.. .+-..+.+.+.....-.-....+.++..+..
T Consensus 122 ~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIin 200 (403)
T 3fga_B 122 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN 200 (403)
T ss_dssp HTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHc
Confidence 344455556778999999999999999888888887655544444332 1223445544333322333456666666666
Q ss_pred CCCCCC-hhhhhccHHHHHhhhcCCC-hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHH
Q 015537 232 GKPQPP-FDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (405)
Q Consensus 232 ~~~~~~-~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l 309 (405)
+...+- .....-....|+.|-+... ...-.....++..+...++.....++ ..++..--..+..=...-+.-+
T Consensus 201 Gfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL~El 275 (403)
T 3fga_B 201 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFLNEL 275 (403)
T ss_dssp HCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHTCCSSCHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCcHHHHHHHHHH
Confidence 652222 2222233455566655543 22334444555555555555444222 3333333222322222234444
Q ss_pred hHhhcCC-hhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhc-ccc
Q 015537 310 GNIVTGD-DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH---VHAFSIIVAFFFM-FLH 384 (405)
Q Consensus 310 ~nl~~~~-~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~lL~~-~~~ 384 (405)
..+...- +...+.+. ..+...+...+.++ +..|.+.|...+.| +.+..++. ..++|.+...|.. ..+
T Consensus 276 e~iLe~~~~~~f~~i~-~~lf~~la~ci~S~-hfqVAErAL~~wnN------e~i~~li~~n~~~IlPii~p~L~~~~~~ 347 (403)
T 3fga_B 276 EEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRNSKT 347 (403)
T ss_dssp HHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhCCHHHHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHhcc------HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4555322 22222222 23666777777787 77887777655422 22233331 2344554444422 111
Q ss_pred cchhhhHHHHHHHHHhh
Q 015537 385 FFFGAIIYKLAIWLCLV 401 (405)
Q Consensus 385 ~~~~~~vr~~A~~al~n 401 (405)
+ =...||..|.-++.-
T Consensus 348 H-Wn~~v~~l~~~vlk~ 363 (403)
T 3fga_B 348 H-WNKTIHGLIYNALKL 363 (403)
T ss_dssp C-SCHHHHHHHHHHHHH
T ss_pred c-cCHHHHHHHHHHHHH
Confidence 1 123577776666643
No 126
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.47 E-value=0.54 Score=43.63 Aligned_cols=119 Identities=18% Similarity=0.029 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh
Q 015537 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL 210 (405)
Q Consensus 131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l 210 (405)
+..+.-|+..|......-|+... .++..++.+..+.+..||.+|+..|..+|.+ . .-.. +.+.|+++|
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i~k-----iaDvL~QlL 109 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-E-NLPR-----VADILTQLL 109 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hhhh-----HHHHHHHHH
Confidence 78899999999998887787665 3567889999999999999999999999987 2 2222 456788888
Q ss_pred hCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHH
Q 015537 211 NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSY 269 (405)
Q Consensus 211 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~ 269 (405)
+..++.-...+-++|..+...+| .+.+..+...+.++++.++..++..|..
T Consensus 110 -qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 110 -QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 67777777777777777776543 3455555555555678888887777654
No 127
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.85 E-value=2.6 Score=35.46 Aligned_cols=167 Identities=11% Similarity=0.135 Sum_probs=100.9
Q ss_pred chhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchh
Q 015537 149 SEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS 217 (405)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~ 217 (405)
..+.+.+ ..+++..|+.+|.. .+...+..++.||..+..........+...+.+..+...+ .++++.
T Consensus 34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~~ 111 (233)
T 2f31_A 34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN 111 (233)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSHH
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCch
Confidence 4555566 34667777777642 1456788899999998866655544444555677777777 788999
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC-C
Q 015537 218 MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-H 296 (405)
Q Consensus 218 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~ 296 (405)
++..++..|..+|...... |..+.++..+.+ ... .-+..-+..++..|. +
T Consensus 112 ~r~~~leLL~~lc~~~~~~------G~~~~VL~Al~~------------~~~-----------~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 112 MMIDAAKLLSALCILPQPE------DMNERVLEAMTE------------RAE-----------MDEVERFQPLLDGLKSG 162 (233)
T ss_dssp HHHHHHHHHHHHHTCSSSS------CHHHHHHHHHHH------------HHH-----------HHTSCTTHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHhCCCCC------ChHHHHHHHHHH------------HHH-----------hCCcchHHHHHHHHhcC
Confidence 9999999999999874210 102222222221 000 011223455666665 3
Q ss_pred CCcchHHHHHHHHhHhhcCChh------hHHHHHhcCchHHHHHhhcCCCchhHHHH
Q 015537 297 PSPSVLIPALRTVGNIVTGDDM------QTQCVIEYQALPCLLNLLSGNYKKSIKKE 347 (405)
Q Consensus 297 ~~~~v~~~a~~~l~nl~~~~~~------~~~~~~~~g~l~~L~~ll~~~~~~~v~~~ 347 (405)
.+.+.+..++..|..++.+.+. .+..+...|+.+.+-.+=... ++.+...
T Consensus 163 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~-~~~L~~Q 218 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE-NEDMKVQ 218 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCC-CHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccC-CHHHHHH
Confidence 4556777777777777765542 234455778777776665544 5555443
No 128
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=93.76 E-value=2.9 Score=35.70 Aligned_cols=102 Identities=9% Similarity=0.073 Sum_probs=72.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
+-.+++.-+..........+...+.++... ++. .-..+++.++.+..+.+ .++|...+..|...+...++...
T Consensus 17 v~~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~----ll~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~- 89 (257)
T 3gs3_A 17 VVDWCNELVIASPSTKCELLAKVQETVLGS-CAE----LAEEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP- 89 (257)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGG----GHHHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-
T ss_pred HHHHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHh----HHHHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH-
Confidence 445555555433368888999999976553 332 11345777888766665 89999999999988865444322
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015537 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~ 187 (405)
..++.|..+++++++.+...++.+.+++.
T Consensus 90 ----~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 90 ----HVINVVSMLLRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp ----HHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45778889999999999999998888764
No 129
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=93.72 E-value=3.6 Score=38.14 Aligned_cols=237 Identities=13% Similarity=0.058 Sum_probs=125.3
Q ss_pred chhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (405)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~ 228 (405)
+......++...+..|+.++.++|+.-++..-.+|..+-+.-...|..+... +-..+.+.+.......-...++..+..
T Consensus 152 ~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgS 230 (449)
T 2npp_B 152 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGS 230 (449)
T ss_dssp STTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHH
T ss_pred hhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 3334555566678889999999999999999888888765544444443321 233455555343333444566777777
Q ss_pred hhcCCCCC-ChhhhhccHHHHHhhhcCCC-hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHH
Q 015537 229 FCRGKPQP-PFDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL 306 (405)
Q Consensus 229 l~~~~~~~-~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 306 (405)
+..+...+ ......-+...|+.|.+... ...-.....++..+...++.....+ +..|+..-=..+..=...-+
T Consensus 231 IinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL 305 (449)
T 2npp_B 231 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFL 305 (449)
T ss_dssp HHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHH
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCCchHHHHHH
Confidence 77776322 22222333455666665543 2233344455555555555444322 23333333222322223334
Q ss_pred HHHhHhhcCC-hhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhc-
Q 015537 307 RTVGNIVTGD-DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH---VHAFSIIVAFFFM- 381 (405)
Q Consensus 307 ~~l~nl~~~~-~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~lL~~- 381 (405)
.-|..+...- +.....+. ..+...+...+.++ +..|.+.|+..+.| +. +..++. ..++|.++..|..
T Consensus 306 ~eleeile~~~~~ef~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w~N-----~~-i~~li~~n~~~IlPii~p~L~~~ 377 (449)
T 2npp_B 306 NELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNN-----EY-IMSLISDNAAKILPIMFPSLYRN 377 (449)
T ss_dssp HHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----HH-HHHHHHTTHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHCC-----HH-HHHHHHhchhhhHHhhHHHHHHH
Confidence 4455555322 22222222 24677778888887 88888887654432 22 222332 2345666665522
Q ss_pred ccccchhhhHHHHHHHHHh
Q 015537 382 FLHFFFGAIIYKLAIWLCL 400 (405)
Q Consensus 382 ~~~~~~~~~vr~~A~~al~ 400 (405)
..++ =...||..|.-++.
T Consensus 378 s~~H-Wn~~V~~la~~vlk 395 (449)
T 2npp_B 378 SKTH-WNKTIHGLIYNALK 395 (449)
T ss_dssp TTCC-SSTTHHHHHHHHHH
T ss_pred HHHh-cCHHHHHHHHHHHH
Confidence 2222 12357777766654
No 130
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.49 E-value=4.4 Score=36.94 Aligned_cols=159 Identities=11% Similarity=0.110 Sum_probs=98.1
Q ss_pred chhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchh
Q 015537 149 SEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS 217 (405)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~ 217 (405)
..+.+.++ .+++..|+.+|.. .+..++..++.||..+..........+.....+..|...+ .+.++.
T Consensus 100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L-~s~~~~ 177 (383)
T 3eg5_B 100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN 177 (383)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC-CTTSHH
T ss_pred cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh-CCCchH
Confidence 45556665 4567777777741 2457888999999999866554544444555677788877 788899
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC-
Q 015537 218 MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH- 296 (405)
Q Consensus 218 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~- 296 (405)
++..++..|..+|....+. |+.+.++.-+ ..+.. .-+..-+..++..|..
T Consensus 178 ~~~~aleLL~~lc~~~~~~------gG~~~VL~Al------------~~~~~-----------~~e~~RF~~lv~~L~~~ 228 (383)
T 3eg5_B 178 MMIDAAKLLSALCILPQPE------DMNERVLEAM------------TERAE-----------MDEVERFQPLLDGLKSG 228 (383)
T ss_dssp HHHHHHHHHHHHHTCCSST------THHHHHHHHH------------HHHHH-----------HHTSCTTHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHhCcCcC------CcHHHHHHHH------------HHHHH-----------hCCCCcHHHHHHHHHcc
Confidence 9999999999999874211 1122222221 11111 1122345566667765
Q ss_pred CCcchHHHHHHHHhHhhcCCh------hhHHHHHhcCchHHHHHhhcC
Q 015537 297 PSPSVLIPALRTVGNIVTGDD------MQTQCVIEYQALPCLLNLLSG 338 (405)
Q Consensus 297 ~~~~v~~~a~~~l~nl~~~~~------~~~~~~~~~g~l~~L~~ll~~ 338 (405)
.+.+.+..++..|..++.+.+ ..+..+...|+.+.+..+=..
T Consensus 229 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~ 276 (383)
T 3eg5_B 229 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREI 276 (383)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcC
Confidence 456777777777777776554 223445577888877764433
No 131
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=93.21 E-value=4.8 Score=36.56 Aligned_cols=102 Identities=9% Similarity=0.081 Sum_probs=73.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~ 154 (405)
+-.+++.-.......+...+..++.++-.. ++. .-.++++.++++-...+ .++|...+..|...+....+...
T Consensus 27 v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~- 99 (386)
T 3o2t_A 27 VVDLLNQAALITNDSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL- 99 (386)
T ss_dssp HHHHHHHHHHCCSTHHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-
T ss_pred HHHHHHhhhccChHHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-
Confidence 344444333322357888888999875543 332 22567999999988887 89999999999888875444422
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015537 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187 (405)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~ 187 (405)
.+++.|..+|.++++.+...++.+.+++.
T Consensus 100 ----~~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 100 ----KLIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 35778888999999999999998888874
No 132
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.03 E-value=4.6 Score=43.03 Aligned_cols=259 Identities=9% Similarity=0.039 Sum_probs=144.4
Q ss_pred HHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHhcC----
Q 015537 75 LPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIASG---- 147 (405)
Q Consensus 75 l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~-~~~~~~~~~~a~~~L~ni~~~---- 147 (405)
+..++..+.+. ++..+.+|-..|.++-.. + .....+...|. .+.++.+|..|+..|.|....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~---p--------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~ 81 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEK---C--------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG 81 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH---C--------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhC---c--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence 45555555554 667788888888776321 1 12344444333 333489999999999987542
Q ss_pred -CchhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHH
Q 015537 148 -TSEHTKVVIDHGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222 (405)
Q Consensus 148 -~~~~~~~~~~~g~i~~L~~lL~~---~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a 222 (405)
+++.+ ..+...++..+...-.. ....++.+...++..|+... |.. -.+.++.++.++.. +......+
T Consensus 82 l~~e~k-~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~~--~~~~~e~~ 153 (1204)
T 3a6p_A 82 MSRLEK-VYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSKQ--GETQTELV 153 (1204)
T ss_dssp SCHHHH-HHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHHT--CHHHHHHH
T ss_pred CCHHHH-HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhcC--CHHHHHHH
Confidence 23333 33333455555443221 45789999999999987432 211 23456777777733 44556778
Q ss_pred HHHHHHhhcCC-C--CCChhh-------h----hccHHHHHhhhcC-------------------CChHHHHHHHHHHHH
Q 015537 223 TWTLSNFCRGK-P--QPPFDQ-------V----SPALPALAHLIHS-------------------NDDEVLTDACWALSY 269 (405)
Q Consensus 223 ~~~l~~l~~~~-~--~~~~~~-------~----~~~l~~L~~ll~~-------------------~d~~v~~~a~~~l~~ 269 (405)
+.+|..++... . ...... + ..+++.+..++.. .+..+...++.++.+
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 88888887541 1 111000 1 1333444444432 123466677777776
Q ss_pred hccCChhHHHHHHhcC--ChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh--hhHHHHHh---cCchHHHHHhhc-----
Q 015537 270 LSDGTNDKIQAVIEAG--VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD--MQTQCVIE---YQALPCLLNLLS----- 337 (405)
Q Consensus 270 l~~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~--~~~~~~~~---~g~l~~L~~ll~----- 337 (405)
....-+. ..+.+.. +++.+..++. ++.++..|+.+|..++.... .....++. ...+..++....
T Consensus 234 ~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~ 309 (1204)
T 3a6p_A 234 YIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG 309 (1204)
T ss_dssp TTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred HHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 6544332 2333432 6777776665 56789999999999997442 22111221 111334444432
Q ss_pred --CCCchhHHHHHHHHHHHHh
Q 015537 338 --GNYKKSIKKEACWTVSNIT 356 (405)
Q Consensus 338 --~~~~~~v~~~a~~~L~nl~ 356 (405)
+..+..+.+..|..+..+.
T Consensus 310 ~~~e~d~e~~k~l~~ll~~lg 330 (1204)
T 3a6p_A 310 GLVEKHYVFLKRLCQVLCALG 330 (1204)
T ss_dssp SCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHH
Confidence 1114567777777777775
No 133
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=92.18 E-value=4 Score=43.50 Aligned_cols=220 Identities=13% Similarity=0.079 Sum_probs=127.4
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----ChhhHH
Q 015537 123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGD-----SPRCRD 195 (405)
Q Consensus 123 ~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~i~~~a~~~L~nl~~~-----~~~~~~ 195 (405)
..++.+.+...+.+|-..|..+-.. + .+...+...| .+.++.++..|+.+|-|.... +++.+.
T Consensus 19 ~~~~p~~~~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~ 88 (1204)
T 3a6p_A 19 VMMDPNSTQRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV 88 (1204)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred HHhCCCCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 3344322367788888777776443 1 2334444433 345789999999999988632 233333
Q ss_pred HHHhcCChHHHHHhhhCC------CchhHHHHHHHHHHHhhcCC-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHH
Q 015537 196 LVLSQGGLVPLLAQLNGQ------PKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS 268 (405)
Q Consensus 196 ~i~~~~~i~~L~~~l~~~------~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~ 268 (405)
.+. ..++..+... .+..++..++.+++.++... | .....+++.++.++.+ ++.....++.+|.
T Consensus 89 ~Ir-----~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~ 158 (1204)
T 3a6p_A 89 YLK-----NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFILL 158 (1204)
T ss_dssp HHH-----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence 332 2344443221 45788888999999988765 4 2235788888888866 4555777888888
Q ss_pred HhccC-------ChhHHH----HHHhc--CChHHHHHhcCC-------------------CCcchHHHHHHHHhHhhcCC
Q 015537 269 YLSDG-------TNDKIQ----AVIEA--GVFPRLAEFLMH-------------------PSPSVLIPALRTVGNIVTGD 316 (405)
Q Consensus 269 ~l~~~-------~~~~~~----~~~~~--~~l~~L~~lL~~-------------------~~~~v~~~a~~~l~nl~~~~ 316 (405)
.+++. ...... .+.+. .+++.+..+|.. .+..+...++.++.+...--
T Consensus 159 ~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi 238 (1204)
T 3a6p_A 159 RLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWV 238 (1204)
T ss_dssp HHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhcc
Confidence 77642 111111 11111 222333333322 12346667778887766543
Q ss_pred hhhHHHHHhcC--chHHHHHhhcCCCchhHHHHHHHHHHHHhcCC--HHHHHHHH
Q 015537 317 DMQTQCVIEYQ--ALPCLLNLLSGNYKKSIKKEACWTVSNITAGN--REQIQVIM 367 (405)
Q Consensus 317 ~~~~~~~~~~g--~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~ 367 (405)
+. ..+.+.. +++.+..++.+ +.++..|+-+|..++... ++....++
T Consensus 239 ~~--~~i~~~~~~ll~~l~~~l~~---~~lr~~A~ecL~~i~s~~~~~~~~~~li 288 (1204)
T 3a6p_A 239 SM--SHITAENCKLLEILCLLLNE---QELQLGAAECLLIAVSRKGKLEDRKPLM 288 (1204)
T ss_dssp CH--HHHHTTTSHHHHHHHHGGGC---TTTHHHHHHHHHHHHTCCSCHHHHGGGG
T ss_pred CH--HHHHhccchHHHHHHHHcCC---HHHHHHHHHHHHHHHhCCCChhhHHHHH
Confidence 31 2233433 77777776654 578999999999998733 44433333
No 134
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=91.57 E-value=0.16 Score=29.12 Aligned_cols=38 Identities=29% Similarity=0.533 Sum_probs=27.1
Q ss_pred HhhhhcCC-CCCchHHhhhhhHHHHHHHHHhhhHHHHhhhh
Q 015537 11 SRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRR 50 (405)
Q Consensus 11 ~r~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~ 50 (405)
+|...||+ +...++.. ||.+ ..+..|++|-+.++..|+
T Consensus 2 PR~sqYK~k~~~~~q~~-rRr~-~L~~QK~~R~D~~nhaR~ 40 (40)
T 2p8q_B 2 PRLSQYKSKYSSLEQSE-RRRR-LLELQKSKRLDYVNHARR 40 (40)
T ss_dssp CCGGGTTCCCCSCSTTH-HHHH-HHHHHHHHHHHHHHTTTC
T ss_pred ccHHhhccccchhhHHH-HHHH-HHHHHHHHHHHHHHHhcC
Confidence 57788999 44444444 4444 678889999998887774
No 135
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=91.39 E-value=4.7 Score=37.35 Aligned_cols=226 Identities=13% Similarity=0.084 Sum_probs=125.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-----c
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-----S 149 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~-----~ 149 (405)
+..|+..+.|+|+..+...-..|+.+-.. -...+.++...+-..|.+++.......-..+.+.+++.|..|- +
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe 241 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHS--CTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence 66788888899998888888888777543 2334445544455566666644332334567888888887763 2
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537 150 EHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (405)
Q Consensus 150 ~~~~~~~~~g~i~~L~~lL~~~~~-~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~ 228 (405)
+++..+ ...|+.|.+...- ..-.+...++..+...++.....+ +..|++.- ..++..=....+.-+..
T Consensus 242 ehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~W-P~tns~KevlFL~elee 310 (449)
T 2npp_B 242 EHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYW-PKTHSPKEVMFLNELEE 310 (449)
T ss_dssp HHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhC-CCCCchHHHHHHHHHHH
Confidence 333222 2334444554332 234456677766665555443332 23344333 22233222333334444
Q ss_pred hhcCCCCCChh-hhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc--CChHHHHHhc-----CCCCcc
Q 015537 229 FCRGKPQPPFD-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVFPRLAEFL-----MHPSPS 300 (405)
Q Consensus 229 l~~~~~~~~~~-~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~l~~L~~lL-----~~~~~~ 300 (405)
+...-+...+. ....+...+..++.+..-.|.+.|+... .++.....+.+. .++|.+...| .|-+..
T Consensus 311 ile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w-----~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~ 385 (449)
T 2npp_B 311 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW-----NNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKT 385 (449)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG-----GCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH-----CCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHH
Confidence 55443222222 3356777788888888888888876432 122222212111 2456666655 233667
Q ss_pred hHHHHHHHHhHhhcCChh
Q 015537 301 VLIPALRTVGNIVTGDDM 318 (405)
Q Consensus 301 v~~~a~~~l~nl~~~~~~ 318 (405)
++..+..++.-+..-++.
T Consensus 386 V~~la~~vlk~l~e~d~~ 403 (449)
T 2npp_B 386 IHGLIYNALKLFMEMNQK 403 (449)
T ss_dssp HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHCHH
Confidence 888888888877765553
No 136
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=89.59 E-value=3.1 Score=37.88 Aligned_cols=223 Identities=14% Similarity=0.094 Sum_probs=115.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc-----
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS----- 149 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~----- 149 (405)
+-.|+..+.|+|+..+...-..|+.+-.. -...+.++...+-..|.+++.....-.-..+.+.+++.|..|-.
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~k--f~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke 208 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 208 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH
Confidence 56677788888888887777777766432 22334444444445566665443212234466777777766532
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537 150 EHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (405)
Q Consensus 150 ~~~~~~~~~g~i~~L~~lL~~~~~-~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~ 228 (405)
++...+. ..|+.+.+.+.- ..-.+...++..+...++.....+ +..|++.- ..++..-....+.-+..
T Consensus 209 ehk~fl~-----~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~W-P~tns~KevlFL~Ele~ 277 (403)
T 3fga_B 209 EHKIFLL-----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYW-PKTHSPKEVMFLNELEE 277 (403)
T ss_dssp HHHHHHH-----HTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhC-CCCCcHHHHHHHHHHHH
Confidence 2222222 233334444332 233566667777665555443332 22333333 22233323333334444
Q ss_pred hhcCCCCCChh-hhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc---CChHHHHHhc-----CCCCc
Q 015537 229 FCRGKPQPPFD-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFL-----MHPSP 299 (405)
Q Consensus 229 l~~~~~~~~~~-~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL-----~~~~~ 299 (405)
+...-+...+. ....++..+...+.++.-.|.+.|+... .++.... ++.. .++|.+...| .|-+.
T Consensus 278 iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w-----nNe~i~~-li~~n~~~IlPii~p~L~~~~~~HWn~ 351 (403)
T 3fga_B 278 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW-----NNEYIMS-LISDNAAKILPIMFPSLYRNSKTHWNK 351 (403)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG-----GCHHHHH-HHHTTHHHHHHHHHHHHHHTTSCCSCH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh-----ccHHHHH-HHHHhHHHHHHHHHHHHHHHHHHccCH
Confidence 44433222222 2356677788888888888888766432 1222222 2221 2345544444 34467
Q ss_pred chHHHHHHHHhHhhcCC
Q 015537 300 SVLIPALRTVGNIVTGD 316 (405)
Q Consensus 300 ~v~~~a~~~l~nl~~~~ 316 (405)
.++..+..++.-+..-+
T Consensus 352 ~v~~l~~~vlk~l~e~d 368 (403)
T 3fga_B 352 TIHGLIYNALKLFMEMN 368 (403)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 88888888887766544
No 137
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=89.49 E-value=4.9 Score=36.48 Aligned_cols=193 Identities=12% Similarity=0.035 Sum_probs=104.7
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 232 (405)
...++...+..|+.++.++|+.=++..-.+|..+-+.-...|..+.. .+-..+.+.+.......-...++..+..+..+
T Consensus 168 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsIIng 246 (392)
T 2jak_A 168 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIING 246 (392)
T ss_dssp TTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 34455567788999999999999999998888776544445444332 23345566664434444455677777777777
Q ss_pred CCCC-ChhhhhccHHHHHhhhcCCC-hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHh
Q 015537 233 KPQP-PFDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (405)
Q Consensus 233 ~~~~-~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~ 310 (405)
...+ ......-....|+.|.+... ...-.....++..+...++.....+ +..++..--..+..=...-+.-|.
T Consensus 247 fa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~ele 321 (392)
T 2jak_A 247 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELE 321 (392)
T ss_dssp CCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHH
Confidence 6322 22222233455666665543 2223344455555555555444422 233444332222222223344444
Q ss_pred HhhcCC-hhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 015537 311 NIVTGD-DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (405)
Q Consensus 311 nl~~~~-~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~ 353 (405)
.+...- +.....+ ...+...+..++.++ +.+|.+.|...+.
T Consensus 322 eiLe~~~~~~f~~i-~~~lF~~la~ci~S~-hfqVAErAL~~wn 363 (392)
T 2jak_A 322 EILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWN 363 (392)
T ss_dssp HHHHTCCHHHHHHH-HHHHHHHHHHHHTCS-SHHHHHHHHGGGG
T ss_pred HHHHhCCHHHHHHH-HHHHHHHHHHHHcCC-cHHHHHHHHHHhC
Confidence 444322 2222222 224667777888887 8888887765443
No 138
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=88.46 E-value=14 Score=33.54 Aligned_cols=165 Identities=12% Similarity=0.127 Sum_probs=100.4
Q ss_pred chhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchh
Q 015537 149 SEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS 217 (405)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~ 217 (405)
..+...+. .+|+..|+.+|.. .+......++.||..+..........+...+++..+...+ .++++.
T Consensus 38 ~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL-~s~~~~ 115 (386)
T 2bnx_A 38 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN 115 (386)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTSHH
T ss_pred cHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHh-CCCCch
Confidence 45555554 4567777776642 1457788999999999866665544555556677777777 788889
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC-C
Q 015537 218 MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-H 296 (405)
Q Consensus 218 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~ 296 (405)
++..++..|..+|...... |..+.++..+. ++. ..-+..-+..++..+. +
T Consensus 116 ~r~~vleLL~alc~~~~~~------G~~~~VL~Al~---------------~~~--------~~~e~~RF~~lv~~l~~~ 166 (386)
T 2bnx_A 116 MMIDAAKLLSALCILPQPE------DMNERVLEAMT---------------ERA--------EMDEVERFQPLLDGLKSG 166 (386)
T ss_dssp HHHHHHHHHHHHHTCCSST------THHHHHHHHHH---------------HHH--------HHHTSCTTHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHcCCCCC------ChHHHHHHHHH---------------HHH--------HhCchhhHHHHHHHHHcC
Confidence 9999999999999864211 11222222221 110 0111233455666665 4
Q ss_pred CCcchHHHHHHHHhHhhcCChh------hHHHHHhcCchHHHHHhhcCCCchhHH
Q 015537 297 PSPSVLIPALRTVGNIVTGDDM------QTQCVIEYQALPCLLNLLSGNYKKSIK 345 (405)
Q Consensus 297 ~~~~v~~~a~~~l~nl~~~~~~------~~~~~~~~g~l~~L~~ll~~~~~~~v~ 345 (405)
.+.+.+..++..|..++.+.+. .+..+...|+.+.+-.+=... ++.+.
T Consensus 167 ~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~-~~~L~ 220 (386)
T 2bnx_A 167 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE-NEDMK 220 (386)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCC-CHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccC-ChhHH
Confidence 4556777777777777766552 334556778888776665544 44444
No 139
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=86.79 E-value=9.2 Score=31.66 Aligned_cols=135 Identities=8% Similarity=-0.062 Sum_probs=82.0
Q ss_pred CCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC-CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHH
Q 015537 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290 (405)
Q Consensus 212 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L 290 (405)
.++.-+.+..++..+....... ....++.+-.++.+ ++..+....+.+++.+....++. +.+.+
T Consensus 65 ~s~~~E~r~la~~~l~~~~~~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~--------~~~~i 129 (220)
T 2b6c_A 65 QKTEREYQYVAIDLALQNVQRF-------SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE--------LPTIF 129 (220)
T ss_dssp TSSSHHHHHHHHHHHHHTGGGC-------CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG--------HHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhhC-------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH--------HHHHH
Confidence 5555666666666665543211 12334444555544 45666666556666665444332 23567
Q ss_pred HHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 015537 291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV 369 (405)
Q Consensus 291 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 369 (405)
...+.+++.-++..|+.++ +.......... .++.+..++.++ +..|++.+.|+|..+...+++.....+..
T Consensus 130 ~~W~~s~~~w~rR~ai~~~--l~~~~~~~~~~-----~~~i~~~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~fl~~ 200 (220)
T 2b6c_A 130 ALFYGAENFWNRRVALNLQ--LMLKEKTNQDL-----LKKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEELMKE 200 (220)
T ss_dssp HHHTTCSSHHHHHHHHHTT--TTCGGGCCHHH-----HHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHH--HHHHHCCCHHH-----HHHHHHHhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHHHhh
Confidence 7888888887777776544 22222222221 245555577777 99999999999999999999877666643
No 140
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=83.61 E-value=1.8 Score=34.16 Aligned_cols=74 Identities=9% Similarity=0.001 Sum_probs=54.5
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~ 146 (405)
+.+..+.+.|++.++.+|..|+..|-.+..........++....++..|+.++....++.++..++..+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999888887654223334566677888888888763447888888887766544
No 141
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=83.55 E-value=10 Score=32.90 Aligned_cols=149 Identities=10% Similarity=0.083 Sum_probs=89.7
Q ss_pred cHHHHHhhhcCC------ChHHHHHHHHHHHHhccCChhHHHHHH-hcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCC
Q 015537 244 ALPALAHLIHSN------DDEVLTDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD 316 (405)
Q Consensus 244 ~l~~L~~ll~~~------d~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 316 (405)
-+..+..+++++ |......++-.|..++..-....+.+- +..++..|+ +.....+.++..|.++||....++
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC
Confidence 333444555544 455677788888888755444444443 334455555 334456789999999999999999
Q ss_pred hhhHHHHHhc--CchHHHHHhhcC----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchh
Q 015537 317 DMQTQCVIEY--QALPCLLNLLSG----N--YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFG 388 (405)
Q Consensus 317 ~~~~~~~~~~--g~l~~L~~ll~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~ 388 (405)
+.....+.+. .++..+..-|.. + ....+.+.-..+|.-|...+.. + ....+..|.+++... .. +
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~-~~--d 173 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERN-NK--D 173 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHT-TT--C
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccC-CC--C
Confidence 9888877653 455555544433 1 1346677777788888665421 1 144557777777643 11 2
Q ss_pred hhHHHHHHHHHhh
Q 015537 389 AIIYKLAIWLCLV 401 (405)
Q Consensus 389 ~~vr~~A~~al~n 401 (405)
+.+|..+.-.+..
T Consensus 174 ~~~k~Kvl~li~d 186 (315)
T 3qml_C 174 KQLQIKVLELISK 186 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566666555443
No 142
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=82.85 E-value=1.5 Score=33.65 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=51.8
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCch-HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~ 146 (405)
+.+..+.+.|++.++.+|..|+..|-.+.... .... .++....++..|+.+++..+ +.++..++..+...+.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNc-G~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNC-GKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhc-CHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHH
Confidence 45677777788888889999888887776543 3333 34556677888888887666 8888888877766543
No 143
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=80.64 E-value=2.5 Score=32.65 Aligned_cols=74 Identities=8% Similarity=-0.069 Sum_probs=55.8
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhc
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR-----EDYPQLQFEAAWALTNIAS 146 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~-----~~~~~~~~~a~~~L~ni~~ 146 (405)
+.+..+.+.|++.++.+|..|+..|-.+......+...++....++..|+.++.. ..++.++..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4577888888999999999999999888765423334556677889999999874 1237889888888777654
No 144
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=80.05 E-value=3.1 Score=32.17 Aligned_cols=74 Identities=7% Similarity=-0.032 Sum_probs=55.5
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC-----CCHHHHHHHHHHHHHHhc
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-----DYPQLQFEAAWALTNIAS 146 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~-----~~~~~~~~a~~~L~ni~~ 146 (405)
+.+..+.+.+++.++.++..|+..|-.+......+...++....++..|+.++... .++.++..++..+...+.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 45778888888999999999999888886654223335566778899999999642 237889888888877654
No 145
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=79.42 E-value=4.6 Score=31.72 Aligned_cols=74 Identities=12% Similarity=0.044 Sum_probs=57.4
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
++..|..-|.+.++.++..|+..|-.+..+ ++.++..+....++..|+.++....++.|+..++..+..-....
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 455666777788899999999888888765 46677788888888899998865568889888888777666543
No 146
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=78.85 E-value=3.5 Score=42.68 Aligned_cols=190 Identities=13% Similarity=0.055 Sum_probs=102.9
Q ss_pred ChHHHHHhhCCCCH-HHHHH-HHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-CCC
Q 015537 160 AVPIFVKLLYSPSD-DVREQ-AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP 236 (405)
Q Consensus 160 ~i~~L~~lL~~~~~-~i~~~-a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~ 236 (405)
++|.|+.+.+..+. ++... +..++..++.... ....+ . .++..+......+++- .+..++..+..+...+ -..
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~-~~~~~-~-~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l 836 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPI-RKNHV-A-AIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQL 836 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCC-CHHHH-H-HHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCC-CHHHH-H-HHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHc
Confidence 77777777766554 66666 6666777764322 11111 1 1233333333224455 6666655544333321 111
Q ss_pred ChhhhhccHHHHHhhhcCCC-hHHHHHHHHHHHHhccCC-h-hHHHHHHh---cCC-----hHHHHHhcCCCCcchHHHH
Q 015537 237 PFDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGT-N-DKIQAVIE---AGV-----FPRLAEFLMHPSPSVLIPA 305 (405)
Q Consensus 237 ~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~-~-~~~~~~~~---~~~-----l~~L~~lL~~~~~~v~~~a 305 (405)
.......+...++.+|.++. .+|+..|..+|+.+.... . .....++. ... ...+-.-. +.+...+..|
T Consensus 837 ~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~-~~~~~~rH~a 915 (997)
T 1vsy_5 837 TEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKL-SKTDIKIHGN 915 (997)
T ss_dssp CTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHH-HHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhccccccccccc-chHHHHHHHH
Confidence 11222567888999999999 999999999999997555 3 22222221 111 11110000 1111456788
Q ss_pred HHHHhHhhcCChhhHHHHHhcCchHHHHHhhcC-C-CchhHHHHHHHHHHHHhc
Q 015537 306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-N-YKKSIKKEACWTVSNITA 357 (405)
Q Consensus 306 ~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~-~-~~~~v~~~a~~~L~nl~~ 357 (405)
+..||.++...+.... =...+|.++..|.. . ....++..+--+|+++=.
T Consensus 916 VLgL~AlV~a~Py~vP---~P~w~P~~l~~La~~~~~~~~i~~tvk~tlseFkr 966 (997)
T 1vsy_5 916 VLGLGAIISAFPYVFP---LPPWIPKNLSNLSSWARTSGMTGNAAKNTISEFKK 966 (997)
T ss_dssp HHHHHHHHTTCSCCSS---CCTHHHHHHHHHHTTSSSCSSHHHHTHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCC---CCcccHHHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 8899999877764420 01234444433331 1 133488888899998854
No 147
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=78.53 E-value=15 Score=31.89 Aligned_cols=147 Identities=10% Similarity=-0.002 Sum_probs=89.8
Q ss_pred HHHHHHhhcCC------ChHHHHHHHHHHHHhhccCCCCchHHHHh--cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015537 75 LPVMVAGVWSN------DSGVQYECTTQFRKLLSIERSPPIEEVIR--SGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (405)
Q Consensus 75 l~~l~~~l~s~------~~~~~~~a~~~l~~l~s~~~~~~~~~~~~--~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~ 146 (405)
+..+..+++++ +......|+..|..+.. + -..-..+++ ...+..|+ +....+ +.+++.|+++|+....
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSH-D-i~~G~KI~~~ef~lL~nL~-~~~~~~-~~~rE~aarII~ssLR 99 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAH-D-YKHGYKIITHEFALLANLS-LNENLP-LTLRELSTRVITSCLR 99 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTT-S-HHHHHHHHHHHHHHHHHHH-HCTTSC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhh-h-HHhhhHHHhCcHHHHHHHH-hhccCC-hhHHHHHHHHHHHHHc
Confidence 45666666666 44566777777777742 1 222233443 23344444 333444 7899999999999999
Q ss_pred CCchhHHHHHhC--CChHHHHHhhCC-------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC--c
Q 015537 147 GTSEHTKVVIDH--GAVPIFVKLLYS-------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--K 215 (405)
Q Consensus 147 ~~~~~~~~~~~~--g~i~~L~~lL~~-------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~--~ 215 (405)
++|.....+.+. ..+..++.-|.. ....++..-+.+|--|..++..+. ..++..|.+++. .. +
T Consensus 100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly~-~~~~d 173 (315)
T 3qml_C 100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVYE-RNNKD 173 (315)
T ss_dssp TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHH-HTTTC
T ss_pred cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHHc-cCCCC
Confidence 999988877763 344444433322 233556666777777776653331 346677777773 34 7
Q ss_pred hhHHHHHHHHHHHhhc
Q 015537 216 LSMLRNATWTLSNFCR 231 (405)
Q Consensus 216 ~~~~~~a~~~l~~l~~ 231 (405)
..++..++..+..+-.
T Consensus 174 ~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 174 KQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc
Confidence 7788877777776653
No 148
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=78.17 E-value=1.9 Score=36.05 Aligned_cols=74 Identities=9% Similarity=0.063 Sum_probs=54.4
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~ 146 (405)
+.+..+.+.|++.++.+|+.|+..|-.+...-..+...++....++..|+.+++...++.++..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 45788888889999999999999888776544223344555667788888888664447888888887776653
No 149
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=76.20 E-value=17 Score=32.87 Aligned_cols=157 Identities=13% Similarity=0.120 Sum_probs=100.3
Q ss_pred cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHh--------c
Q 015537 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL--------S 271 (405)
Q Consensus 200 ~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l--------~ 271 (405)
.++++.++.+- .+.+.++++.++.+|...|.. .......+++.|..++.+.|+.|...++.+.+.+ +
T Consensus 62 ~~fl~~il~f~-~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 62 DNFLDEIIAFQ-ADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGGHHHHHGGG-GCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34778888877 677899999999999998864 2334567888889999888888887776655443 2
Q ss_pred cCCh------hHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc--C--C-h-h---------------------
Q 015537 272 DGTN------DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT--G--D-D-M--------------------- 318 (405)
Q Consensus 272 ~~~~------~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~--~--~-~-~--------------------- 318 (405)
.+.. .....+. .+-..++.++.+.+..++..++..+..++- . . + .
T Consensus 137 ~~~~~~~~~e~~W~~m~--~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L 214 (386)
T 3o2t_A 137 KSRVISELQEACWDMVS--AMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYI 214 (386)
T ss_dssp HC-CCCHHHHHHHHHHH--HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSS
T ss_pred cCCCcchhHHHHHHHHH--HHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcC
Confidence 2221 1222222 233566777788888999999988877661 1 0 0 0
Q ss_pred hHHHHH--hcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHH
Q 015537 319 QTQCVI--EYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQI 363 (405)
Q Consensus 319 ~~~~~~--~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~ 363 (405)
....+- ..++++.|+.++.++. ++..--.+..+|++|+..-|...
T Consensus 215 ~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~ 262 (386)
T 3o2t_A 215 QYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFM 262 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGH
T ss_pred CHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHH
Confidence 001111 2357888888888642 33444556778888876444433
No 150
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=74.95 E-value=3.8 Score=32.53 Aligned_cols=74 Identities=7% Similarity=-0.039 Sum_probs=54.5
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhc
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR-----EDYPQLQFEAAWALTNIAS 146 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~-----~~~~~~~~~a~~~L~ni~~ 146 (405)
+.+..+.+.|++.++.+|..|+..|-.+..........++....++..|+.++.. ..++.++..++..+...+.
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3567788888899999999999998888754322333456677889999999863 1237888888888877654
No 151
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=73.51 E-value=14 Score=33.42 Aligned_cols=177 Identities=15% Similarity=0.092 Sum_probs=86.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc-----
Q 015537 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS----- 149 (405)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~----- 149 (405)
+..|+..+.|+|+..+..--..|+.+-.. -...+.++...+-..|.+++.......-..+.+.+++.|..+-.
T Consensus 176 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKe 253 (392)
T 2jak_A 176 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 253 (392)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence 56677788888888887777777666432 23444555555556677776554323345567778877777643
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537 150 EHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (405)
Q Consensus 150 ~~~~~~~~~g~i~~L~~lL~~~~~-~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~ 228 (405)
+.+..+ ...|+.+.+...- ..-.+...++..+...++.....+ +..|++.- -.++..=....+.-+..
T Consensus 254 ehk~Fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~W-P~tns~KevlFL~elee 322 (392)
T 2jak_A 254 EHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYW-PKTHSPKEVMFLNELEE 322 (392)
T ss_dssp HHHHHH-----HHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSS-CSSCCTTHHHHHHHHHH
T ss_pred HHHHHH-----HHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhC-CCCCchHHHHHHHHHHH
Confidence 222222 2233334443321 223344555555554444333322 22333332 11111111112222222
Q ss_pred hhcCCCCCChh-hhhccHHHHHhhhcCCChHHHHHHH
Q 015537 229 FCRGKPQPPFD-QVSPALPALAHLIHSNDDEVLTDAC 264 (405)
Q Consensus 229 l~~~~~~~~~~-~~~~~l~~L~~ll~~~d~~v~~~a~ 264 (405)
+...-+...+. ....+...+..++.++.-.|.+.|+
T Consensus 323 iLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL 359 (392)
T 2jak_A 323 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERAL 359 (392)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 22222222222 2255556666777777766666664
No 152
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=73.36 E-value=39 Score=28.08 Aligned_cols=141 Identities=11% Similarity=0.078 Sum_probs=81.7
Q ss_pred HHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC-CChHHHHHHH-HHHHHhccCChhHHHHHHhc
Q 015537 207 LAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-NDDEVLTDAC-WALSYLSDGTNDKIQAVIEA 284 (405)
Q Consensus 207 ~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~-~~l~~l~~~~~~~~~~~~~~ 284 (405)
+..|-.++..+.+..++..+....... ....++.+-.++.. ++..+....+ .+++.+....++
T Consensus 66 ~~~L~~~~~~E~r~~ai~~l~~~~k~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~-------- 130 (232)
T 3jxy_A 66 IRELWDLPEREFQAAALDIMQKYKKHI-------NETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE-------- 130 (232)
T ss_dssp HHHHHTSSBHHHHHHHHHHHHHTGGGC-------CGGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG--------
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHhC-------CHHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH--------
Confidence 333335556666666666554332111 11334444445543 4455444332 344444433322
Q ss_pred CChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 015537 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (405)
Q Consensus 285 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (405)
...+.+...+.+++.-++..|+..+ +......... .+++.+...+.++ +..|++.+.|+|..+...+++.+.
T Consensus 131 ~~~~~l~~W~~s~~~w~rR~ai~~~--l~~~~~~d~~-----~~~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~v~ 202 (232)
T 3jxy_A 131 LISAYIPKWIASDNIWLQRAAILFQ--LKYKQKMDEE-----LLFWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDVVW 202 (232)
T ss_dssp GGGGTHHHHHHSSCHHHHHHHHHTT--TTCGGGCCHH-----HHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHH--HHHHhCCCHH-----HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHHHH
Confidence 1346777888888887777776544 2221111111 2345566677777 999999999999999999999888
Q ss_pred HHHHhC
Q 015537 365 VIMHVH 370 (405)
Q Consensus 365 ~l~~~~ 370 (405)
..++.+
T Consensus 203 ~fl~~~ 208 (232)
T 3jxy_A 203 EYVQNN 208 (232)
T ss_dssp HHHHHS
T ss_pred HHHHHC
Confidence 777654
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=72.72 E-value=3 Score=34.66 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=52.4
Q ss_pred cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015537 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIA 145 (405)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~ 145 (405)
+.+..+.+.|++.++.+|..|+..|-.+...-..+...++....++..|+.++....++.++..++..+...+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4577888888899999999999988887654312223455566788888888865444788887777666554
No 154
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=72.55 E-value=0.82 Score=47.34 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=65.8
Q ss_pred cHHHHHhhhcCCCh-HHHHH-HHHHHHHhccCC--hhHHHHHHhcCChHHHHHhcC-CCCcchHHHHHHHHhHhhcC---
Q 015537 244 ALPALAHLIHSNDD-EVLTD-ACWALSYLSDGT--NDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTG--- 315 (405)
Q Consensus 244 ~l~~L~~ll~~~d~-~v~~~-a~~~l~~l~~~~--~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~nl~~~--- 315 (405)
++|.+..+....|. ++... +..++..++... ++.... ++..+..... ++++ .+..++..+..+...
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~-----~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f 834 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAA-----IVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELL 834 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHH-----HHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHH
Confidence 55666666655554 55555 556666665432 233322 2344444444 5677 888887776555532
Q ss_pred --ChhhHHHHHhcCchHHHHHhhcCCCc-hhHHHHHHHHHHHHhcCC
Q 015537 316 --DDMQTQCVIEYQALPCLLNLLSGNYK-KSIKKEACWTVSNITAGN 359 (405)
Q Consensus 316 --~~~~~~~~~~~g~l~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~ 359 (405)
+..+.. .+.+.+..+|.++ . .+||+.|+-+|+-+..++
T Consensus 835 ~l~~~~~~-----~i~~~v~~~L~D~-q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 835 QLTEEEKN-----KILEFVVSNLYNE-QFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp TSCTTHHH-----HTHHHHTTTTTCS-SCHHHHHHHHHHHHHHHHSC
T ss_pred HcCHHHHH-----HHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcC
Confidence 222222 4678899999999 8 999999999999997655
No 155
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=71.52 E-value=9.3 Score=31.84 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=58.0
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
++..|..-|.+.++.++..|+..|-.+..+ ++.++..+....++..|..++....+..|+..++..+...+...
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 466777778888999999999888888755 34467777777788888888866678889998888888777654
No 156
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=70.79 E-value=18 Score=30.64 Aligned_cols=107 Identities=10% Similarity=0.008 Sum_probs=65.0
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhC----C---CchhHHHHHHHHHHHhhcCC-C-CCCh
Q 015537 168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG----Q---PKLSMLRNATWTLSNFCRGK-P-QPPF 238 (405)
Q Consensus 168 L~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~----~---~~~~~~~~a~~~l~~l~~~~-~-~~~~ 238 (405)
+.+.++..+-.++.+++|+..+....+..+........++..+.. . .+..++..++..+.|++-.. . ....
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~ 178 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDL 178 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCT
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchH
Confidence 334567889999999999998777445555443233444444311 1 25677888888888888643 1 1112
Q ss_pred hhhhccHHHHHhhhc-----CCChHHHHHHHHHHHHhccCC
Q 015537 239 DQVSPALPALAHLIH-----SNDDEVLTDACWALSYLSDGT 274 (405)
Q Consensus 239 ~~~~~~l~~L~~ll~-----~~d~~v~~~a~~~l~~l~~~~ 274 (405)
.....++..+...+. ..|++....++-+++++...+
T Consensus 179 e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 179 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 222233333333221 137888888999999987544
No 157
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=67.50 E-value=9.2 Score=31.68 Aligned_cols=74 Identities=12% Similarity=0.129 Sum_probs=56.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 233 (405)
++..|..-|.+.++.++..|+..|-.+..+. +.++..+....++..|..++.+..+..|+..++..+..-....
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 117 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF 117 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Confidence 4556667777889999999999999888664 5577778777788888888866667888888777776665443
No 158
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=58.17 E-value=18 Score=27.72 Aligned_cols=74 Identities=14% Similarity=-0.029 Sum_probs=57.1
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhhC-----CCchhHHHHHHHHHHHhhcCC
Q 015537 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNG-----QPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~L~~~l~~-----~~~~~~~~~a~~~l~~l~~~~ 233 (405)
++..|..-|.+.++.++-.|+..|-.+..+ ++.++..+....++..|+.++.. ..+..|+..++..+..-+...
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 456677777888999999999999888865 46688888888889999988843 247788888887777666543
No 159
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=57.94 E-value=86 Score=26.51 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=30.8
Q ss_pred hccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (405)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl 312 (405)
..+++.++.+..+.+.+++...+..+...+....+... .+++.|..+|.+.++.+...++.+.+++
T Consensus 52 ~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44555555544444555555555555554433332222 1234455555555555555555444433
No 160
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=57.19 E-value=2.8 Score=37.05 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=28.8
Q ss_pred CchHhhhhcCCCCCchHHhhhhhHHHHHHHHHhhhHHHHhhhhcc
Q 015537 8 KADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREG 52 (405)
Q Consensus 8 ~~~~r~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~ 52 (405)
...+|...||+...+.+.. +|++...+..|++|.+.+...|+..
T Consensus 28 a~HPR~sqyK~k~~~~~Q~-~RR~~~Le~QK~kR~d~~~haR~La 71 (365)
T 3gjx_B 28 APHPRLSQYKSKYSSLEQS-ERRRRLLELQKSKRLDYVNHARRLA 71 (365)
T ss_dssp SCCGGGCC---CTTCCSCC-HHHHHHHHHTCCCCSCHHHHHHHHH
T ss_pred CCCcchhhcccccchhhHH-HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5568999999943443333 4445566788889999999999864
No 161
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=57.00 E-value=74 Score=29.16 Aligned_cols=131 Identities=12% Similarity=0.030 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhC
Q 015537 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212 (405)
Q Consensus 134 ~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~ 212 (405)
++-++.+|.-++...+.. +.+..++ ..+.+..+..+-.++.+++|+..+....+..+........++..+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 556777777666653321 2233333 34445678889999999999997776444444332224555555421
Q ss_pred C-------CchhHHHHHHHHHHHhhcCC--CCCChhhhhccHHHHHhhhc---------CCChHHHHHHHHHHHHhccCC
Q 015537 213 Q-------PKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLIH---------SNDDEVLTDACWALSYLSDGT 274 (405)
Q Consensus 213 ~-------~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~L~~ll~---------~~d~~v~~~a~~~l~~l~~~~ 274 (405)
. .+..++..++..+.|++-.. .... ..+++.+..++. ..|++....++-||++|....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1 24567888888888888653 1111 123344444444 258899999999999998544
Q ss_pred h
Q 015537 275 N 275 (405)
Q Consensus 275 ~ 275 (405)
+
T Consensus 392 ~ 392 (425)
T 3pst_A 392 P 392 (425)
T ss_dssp H
T ss_pred H
Confidence 3
No 162
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=55.70 E-value=19 Score=27.96 Aligned_cols=74 Identities=9% Similarity=-0.039 Sum_probs=49.3
Q ss_pred cCHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHH-HHHHhcC--CCCHHHHHHHHHHHHHHhc
Q 015537 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR-FVEFLLR--EDYPQLQFEAAWALTNIAS 146 (405)
Q Consensus 73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~-Li~lL~~--~~~~~~~~~a~~~L~ni~~ 146 (405)
+.+..+.+.|++ .++.++..|+..|-.+..........++.+..++.. |+.++.. .....++..++..+...+.
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 456777777874 788888888888887766542233344666678887 7888843 2225788877777766543
No 163
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=55.02 E-value=15 Score=27.82 Aligned_cols=72 Identities=13% Similarity=0.082 Sum_probs=53.2
Q ss_pred hccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHH-HHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhh
Q 015537 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (405)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 313 (405)
..++..|.+-|.+.++.++..|+..|-.+..+...... .+.+..++..++.++...++.|+..++..+...+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 45677778888889999999999888888776554433 3445567777888776667788888877776655
No 164
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=54.90 E-value=87 Score=25.63 Aligned_cols=141 Identities=10% Similarity=-0.049 Sum_probs=87.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 015537 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLV 197 (405)
Q Consensus 119 ~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i 197 (405)
..+..+..++. -+.+..|+.+|........+. .++.+-.++. -++-++....+.+++.+....+..
T Consensus 58 ~~~~~L~~s~~-~E~r~la~~~l~~~~~~~~~~--------~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~---- 124 (220)
T 2b6c_A 58 QEIEAYYQKTE-REYQYVAIDLALQNVQRFSLE--------EVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE---- 124 (220)
T ss_dssp HHHHHHHTSSS-HHHHHHHHHHHHHTGGGCCHH--------HHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG----
T ss_pred HHHHHHHcCch-hHHHHHHHHHHHHHHhhCCHH--------HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH----
Confidence 33445555555 788999988888764321111 1222223333 357788887777777776433321
Q ss_pred HhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhH
Q 015537 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK 277 (405)
Q Consensus 198 ~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~ 277 (405)
..+.+.... .+++.-+++.++-++..... ......+++.+..++.+++.-|+..+.|+|..++..+++.
T Consensus 125 ----~~~~i~~W~-~s~~~w~rR~ai~~~l~~~~------~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~ 193 (220)
T 2b6c_A 125 ----LPTIFALFY-GAENFWNRRVALNLQLMLKE------KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQW 193 (220)
T ss_dssp ----HHHHHHHHT-TCSSHHHHHHHHHTTTTCGG------GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred ----HHHHHHHHH-cCCCHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHH
Confidence 122344444 88888888888775532211 1122445666666888888999999999999999888876
Q ss_pred HHHHHh
Q 015537 278 IQAVIE 283 (405)
Q Consensus 278 ~~~~~~ 283 (405)
+..++.
T Consensus 194 v~~fl~ 199 (220)
T 2b6c_A 194 VEELMK 199 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655553
No 165
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=54.46 E-value=28 Score=31.17 Aligned_cols=130 Identities=12% Similarity=0.032 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhC
Q 015537 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212 (405)
Q Consensus 134 ~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~ 212 (405)
+.-++.+|.-+..+.+.. +.+..++ ..+.+..+..+-.++++++|+..+....+..+........++..+..
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 566777777766653321 2333333 33445678889999999999997776344444322123344444311
Q ss_pred -------CCchhHHHHHHHHHHHhhcCC--CCCChhhhhccHHHHHhhhc---------CCChHHHHHHHHHHHHhccCC
Q 015537 213 -------QPKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLIH---------SNDDEVLTDACWALSYLSDGT 274 (405)
Q Consensus 213 -------~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~L~~ll~---------~~d~~v~~~a~~~l~~l~~~~ 274 (405)
..+..++..++..+.|++-.. .... ..+++.+..++. ..|++....++-++++|....
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 125667888888888888653 1111 233344555544 358899999999999998543
No 166
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=54.27 E-value=18 Score=28.50 Aligned_cols=74 Identities=16% Similarity=0.056 Sum_probs=57.3
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhC-----CCchhHHHHHHHHHHHhhcCC
Q 015537 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNG-----QPKLSMLRNATWTLSNFCRGK 233 (405)
Q Consensus 160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~-----~~~~~~~~~a~~~l~~l~~~~ 233 (405)
++..|..-|.+.++.++..|+..|-.+..++ ..++..+....++..|+.++.. ..+..|+..++..+..-....
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 4567777788889999999999998888763 5677888888889999998842 246788888887777666553
No 167
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=53.40 E-value=21 Score=32.77 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=67.8
Q ss_pred CCChHHHHHHHHHHHHhhccCCCCchHHHHhc-CcHHHHHHHhcCC-------CCHHHHHHHHHHHHHHhcCCchhHHHH
Q 015537 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLRE-------DYPQLQFEAAWALTNIASGTSEHTKVV 155 (405)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-g~l~~Li~lL~~~-------~~~~~~~~a~~~L~ni~~~~~~~~~~~ 155 (405)
+..+..+.-+++++.|+.+.. .....+... ...+.+++.+... .+..++..++..+.|++......+.
T Consensus 273 ~~~~an~MltlR~laNlF~~~--~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~-- 348 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNE--NWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 348 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCT--TTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS--
T ss_pred CCChhHHHHHHHHHHHhcCCc--chHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc--
Confidence 456889999999999997532 323444432 3356666655321 1257899999999998874221110
Q ss_pred HhCCChHHHHHhhC---------CCCHHHHHHHHHHHHHhhCCChhhHH
Q 015537 156 IDHGAVPIFVKLLY---------SPSDDVREQAVWALGNIAGDSPRCRD 195 (405)
Q Consensus 156 ~~~g~i~~L~~lL~---------~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (405)
+...+..++..+. ..+++....++-+||+|...++..+.
T Consensus 349 -~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~ 396 (425)
T 3pst_A 349 -DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQ 396 (425)
T ss_dssp -CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred -hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 1223445555554 24888999999999999965554443
No 168
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=51.66 E-value=59 Score=26.19 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=66.4
Q ss_pred ChHHHHHhhCC------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC--chhHHHHHHHHHHHhhc
Q 015537 160 AVPIFVKLLYS------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCR 231 (405)
Q Consensus 160 ~i~~L~~lL~~------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~--~~~~~~~a~~~l~~l~~ 231 (405)
.+|+++.++.+ .+.......+.....|..+..-.-+. .-+..+++++.++.... ...++..|+..+..+|+
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lep-YlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~ 119 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDP-YLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYD 119 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGG-GHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHH-HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 56777776643 35566666666666665443211111 11225677777764322 22799999999999998
Q ss_pred CCCCCChhhhhccHHHHHhhhcCC--ChHHHHHHHHHHHHhc
Q 015537 232 GKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLS 271 (405)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~ 271 (405)
............+...+.+.+.++ .....--|+++|..+.
T Consensus 120 ~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 120 TYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 764333333355666666666543 3566677777777764
No 169
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=49.78 E-value=37 Score=26.02 Aligned_cols=72 Identities=18% Similarity=0.069 Sum_probs=55.0
Q ss_pred hccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHH-HHHHhcCChHHHHHhcCC------CCcchHHHHHHHHhHhh
Q 015537 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI-QAVIEAGVFPRLAEFLMH------PSPSVLIPALRTVGNIV 313 (405)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~l~~L~~lL~~------~~~~v~~~a~~~l~nl~ 313 (405)
..++..|.+-+++.++.++..|+..|-.+..++.... ..+.+..++..|+.++.. .+..|+..++..|...+
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 4567778888889999999999999988887665543 445566888889988863 45678888887776665
No 170
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=47.23 E-value=22 Score=30.15 Aligned_cols=131 Identities=11% Similarity=0.016 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHH-hcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhh
Q 015537 90 QYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEF-LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168 (405)
Q Consensus 90 ~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~l-L~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL 168 (405)
++-++..+|-++... .. .+.+..++.- +.+. .+..+.-++++++|+..+....+..+........++..+
T Consensus 71 ~fP~lDllRl~~~~~---~~-----~~~l~~~l~~~~~~~-~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i 141 (253)
T 3gae_A 71 KTPAYDIVRLIVKKL---PY-----SSDIKDYIEEGLGNK-NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETI 141 (253)
T ss_dssp CHHHHHHHHHHGGGC---SC-----GGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHS
T ss_pred cchHHHHHHHHHcCC---ch-----HHHHHHHHHHhcCCC-chhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHH
Confidence 455666666554322 11 1334444333 3334 488999999999999887442455554432334444433
Q ss_pred CC--------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhC----C----CchhHHHHHHHHHHHhhcC
Q 015537 169 YS--------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG----Q----PKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 169 ~~--------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~----~----~~~~~~~~a~~~l~~l~~~ 232 (405)
.+ ++..++-.++..+.|++......+. +......++..+.. . .+++...-++-++.+|...
T Consensus 142 ~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 142 DTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp CSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 21 3567888899999999842110000 11223445555532 2 3677888888888888864
No 171
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=47.01 E-value=21 Score=32.01 Aligned_cols=106 Identities=15% Similarity=0.149 Sum_probs=65.6
Q ss_pred CCChHHHHHHHHHHHHhhccCCCCchHHHHhcC-cHHHHHHHhcCC-------CCHHHHHHHHHHHHHHhcCCchhHHHH
Q 015537 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG-VVPRFVEFLLRE-------DYPQLQFEAAWALTNIASGTSEHTKVV 155 (405)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g-~l~~Li~lL~~~-------~~~~~~~~a~~~L~ni~~~~~~~~~~~ 155 (405)
+..+..+.-+++++.|+.+.. ...+.+.... ....+++.+... .+..++..++..+.|++......+.
T Consensus 210 ~~~~~n~MltlR~laNlF~~~--~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~-- 285 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNE--NWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 285 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCT--TTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS--
T ss_pred CCChhHHHHHHHHHHHhccCc--chHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc--
Confidence 456789999999999997532 3234444321 234445544211 1257899999999998874221110
Q ss_pred HhCCChHHHHHhhC---------CCCHHHHHHHHHHHHHhhCCChhhH
Q 015537 156 IDHGAVPIFVKLLY---------SPSDDVREQAVWALGNIAGDSPRCR 194 (405)
Q Consensus 156 ~~~g~i~~L~~lL~---------~~~~~i~~~a~~~L~nl~~~~~~~~ 194 (405)
+......+...+. ..+++....++-+||+|...++..+
T Consensus 286 -~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~ 332 (362)
T 3l3f_X 286 -DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLR 332 (362)
T ss_dssp -CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred -hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 1223445556555 2588899999999999996555443
No 172
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=45.84 E-value=24 Score=29.45 Aligned_cols=76 Identities=5% Similarity=0.028 Sum_probs=52.8
Q ss_pred hHHHHHhcCCCCcchHHHHHH----HHhHhhcC--ChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 015537 287 FPRLAEFLMHPSPSVLIPALR----TVGNIVTG--DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (405)
Q Consensus 287 l~~L~~lL~~~~~~v~~~a~~----~l~nl~~~--~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 360 (405)
.+.+...+.+++.-.+..++. .++.+... ++.... .+++.+...+.++ +..|++.+.|+|..+...++
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~-----~~l~~i~~~l~~~-~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKIS-----DMLEMVKDTIHHS-PERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHH-----HHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHH-----HHHHHHHHHccCC-hHHHHHHHHHHHHHHHhhCH
Confidence 356677788888878877777 55552211 122222 3466667788888 99999999999999988777
Q ss_pred HHHHHHHH
Q 015537 361 EQIQVIMH 368 (405)
Q Consensus 361 ~~~~~l~~ 368 (405)
+.....++
T Consensus 184 ~~~~~al~ 191 (235)
T 1t06_A 184 PLHEKAVE 191 (235)
T ss_dssp GGHHHHHH
T ss_pred HHHHHHHH
Confidence 76665553
No 173
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=43.54 E-value=1.2e+02 Score=30.46 Aligned_cols=119 Identities=10% Similarity=0.060 Sum_probs=74.6
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhC--CCchhHHHHHHHHHHH
Q 015537 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--QPKLSMLRNATWTLSN 228 (405)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~--~~~~~~~~~a~~~l~~ 228 (405)
.++.+++ -..|.+...+.+.+..+...+..+|.+||.-.|.+.+.++. ++++.+..-|.. -..+.-...++.++..
T Consensus 332 ~~~~fV~-~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~ 409 (799)
T 1vsy_4 332 CHEEIVE-IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTR 409 (799)
T ss_dssp HHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHT
T ss_pred HHHHHHH-HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHH
Confidence 3344443 34566677778899999999999999999877755555443 345555555533 3455556666677766
Q ss_pred hhcCC--CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 015537 229 FCRGK--PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (405)
Q Consensus 229 l~~~~--~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (405)
+++-- ...-...+..++..++.-+..+|+.--..++..+..++
T Consensus 410 ~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 410 VIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp THHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 66532 11112233456666666777788876667776666654
No 174
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=42.33 E-value=46 Score=25.68 Aligned_cols=73 Identities=15% Similarity=0.071 Sum_probs=51.4
Q ss_pred ChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHH-HHHhhhC--CCchhHHHHHHHHHHHhhcC
Q 015537 160 AVPIFVKLLY-SPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVP-LLAQLNG--QPKLSMLRNATWTLSNFCRG 232 (405)
Q Consensus 160 ~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~-L~~~l~~--~~~~~~~~~a~~~l~~l~~~ 232 (405)
++..|..-|+ +.++.++-.|+..|-.+..++ +.++..+....++.. |+.++.. .++..|+..++..+..-...
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 4556666776 478888888988888887653 667778888778887 7787732 23457777777766655543
No 175
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=42.00 E-value=79 Score=24.05 Aligned_cols=74 Identities=9% Similarity=0.147 Sum_probs=54.4
Q ss_pred HHHHHhcCChHHHHHhcCC------CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHH
Q 015537 278 IQAVIEAGVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACW 350 (405)
Q Consensus 278 ~~~~~~~~~l~~L~~lL~~------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~ 350 (405)
...+++.|++..+-..|.- ++..++...+.+|.++- -..+.+.++|+-..++.+-.++ ..+.+|+-|--
T Consensus 54 ~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~ 129 (145)
T 2xpp_A 54 QESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSINPKESKEVRASAKA 129 (145)
T ss_dssp HHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHH
Confidence 4568889999999999852 45679999999999883 2356788888888888777766 24567776665
Q ss_pred HHHHH
Q 015537 351 TVSNI 355 (405)
Q Consensus 351 ~L~nl 355 (405)
.+..-
T Consensus 130 Li~~W 134 (145)
T 2xpp_A 130 LVQKW 134 (145)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 176
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=40.25 E-value=1.5e+02 Score=24.30 Aligned_cols=140 Identities=13% Similarity=0.079 Sum_probs=85.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhc-CCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHH-HHHHHhhCCChhhHHH
Q 015537 120 RFVEFLLREDYPQLQFEAAWALTNIAS-GTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAV-WALGNIAGDSPRCRDL 196 (405)
Q Consensus 120 ~Li~lL~~~~~~~~~~~a~~~L~ni~~-~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~-~~L~nl~~~~~~~~~~ 196 (405)
.+-.+..++. .+.+..|+..+..... .+++ .++.+-.++.. ++.++....+ .+++.+....+.
T Consensus 65 ~~~~L~~~~~-~E~r~~ai~~l~~~~k~~~~~---------~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~---- 130 (232)
T 3jxy_A 65 IIRELWDLPE-REFQAAALDIMQKYKKHINET---------HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE---- 130 (232)
T ss_dssp HHHHHHTSSB-HHHHHHHHHHHHHTGGGCCGG---------GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG----
T ss_pred HHHHHhcCcH-HHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH----
Confidence 4445555555 6788888877764322 1122 23333344433 5777776553 455665543332
Q ss_pred HHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChh
Q 015537 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (405)
Q Consensus 197 i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (405)
...+.+.... .++++-+++.++-.+..... . ......++.+..++.+++.-|+..+.|+|..++..+++
T Consensus 131 ----~~~~~l~~W~-~s~~~w~rR~ai~~~l~~~~---~---~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~ 199 (232)
T 3jxy_A 131 ----LISAYIPKWI-ASDNIWLQRAAILFQLKYKQ---K---MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPD 199 (232)
T ss_dssp ----GGGGTHHHHH-HSSCHHHHHHHHHTTTTCGG---G---CCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred ----HHHHHHHHHh-cCCchHHHHHHHHHHHHHHh---C---CCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHH
Confidence 1223444555 77888888888765432211 1 11234556677788888999999999999999998888
Q ss_pred HHHHHHhc
Q 015537 277 KIQAVIEA 284 (405)
Q Consensus 277 ~~~~~~~~ 284 (405)
.+...++.
T Consensus 200 ~v~~fl~~ 207 (232)
T 3jxy_A 200 VVWEYVQN 207 (232)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666554
No 177
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=35.94 E-value=1.4e+02 Score=22.62 Aligned_cols=76 Identities=9% Similarity=-0.050 Sum_probs=57.0
Q ss_pred hhHHHHHhcCchHHHHHhhcCC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHH
Q 015537 318 MQTQCVIEYQALPCLLNLLSGN-----YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIY 392 (405)
Q Consensus 318 ~~~~~~~~~g~l~~L~~ll~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr 392 (405)
.....+++.|++..+..+|..- +...||+...-+|.++- -+ ...+.++|+=..++.+-++.... +.+|
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP-I~---~e~Lk~SglGkvv~~l~k~~~et---~~nk 124 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK-IH---KEHLVTSGVGKIVYFYSINPKES---KEVR 124 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC-CC---HHHHHHHCHHHHHHHHHHCTTSC---HHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC-CC---HHHhhcCCCCcchhhhhcCCccC---HHHH
Confidence 3456789999999999999842 26689999999999984 22 35677888888887776655443 6888
Q ss_pred HHHHHHHh
Q 015537 393 KLAIWLCL 400 (405)
Q Consensus 393 ~~A~~al~ 400 (405)
+-|.-.+.
T Consensus 125 ~la~~Li~ 132 (145)
T 2xpp_A 125 ASAKALVQ 132 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876654
No 178
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=34.47 E-value=4.6e+02 Score=28.08 Aligned_cols=261 Identities=16% Similarity=0.115 Sum_probs=129.7
Q ss_pred hcCHHHHHHhhc-CCChHHHHHHHHHHHHhhccCCC--Cc-h----HHHHhc----------C----cHHHHHHHhcCC-
Q 015537 72 LENLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERS--PP-I----EEVIRS----------G----VVPRFVEFLLRE- 128 (405)
Q Consensus 72 ~~~l~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~--~~-~----~~~~~~----------g----~l~~Li~lL~~~- 128 (405)
.+.+|.++++|- +.++..-.+++..+|.-+..+.- |. . ..+... | ....+++.+++.
T Consensus 241 ~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lild~lks~l 320 (1323)
T 3s4w_B 241 LEDFPVIVKFLLHSVTDTTSLEVIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAI 320 (1323)
T ss_dssp TTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHCC----------------------------CHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcCccccccchhhhhhhhhhhccccccCCccccccccchHHHHHHHHHHHH
Confidence 356899999665 44555566677888876654310 00 0 000000 1 111133333321
Q ss_pred -CCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHH----------H
Q 015537 129 -DYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRD----------L 196 (405)
Q Consensus 129 -~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~i~~~a~~~L~nl~~~~~~~~~----------~ 196 (405)
....+-..-+..+.++..... ...++.++-++ .+.+..-+..+-.++.+-+..+.-..+ .
T Consensus 321 ~~~k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~ 392 (1323)
T 3s4w_B 321 RYEKTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYL 392 (1323)
T ss_dssp HHCHHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHH
Confidence 014555555556666554311 13444444332 233444555666666665543321111 1
Q ss_pred HHhcCChHHHHH---hhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC
Q 015537 197 VLSQGGLVPLLA---QLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (405)
Q Consensus 197 i~~~~~i~~L~~---~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 273 (405)
++ ...++.++. .+..+.++.++..+......+..... ...-..++..|+..+-++...-...|+..|..|+..
T Consensus 393 vL-~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd---~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~ 468 (1323)
T 3s4w_B 393 VL-KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD---TYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVL 468 (1323)
T ss_dssp HH-TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhc
Confidence 11 223444443 34478888888888877777776642 122256777777766556544455588888888765
Q ss_pred ChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHH
Q 015537 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE 347 (405)
Q Consensus 274 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~ 347 (405)
.+...... +-.+..+++.+.+-+..-......+|+.++.+........+...+.-.+-+.|.++ +...|+.
T Consensus 469 ~~~~l~~~--a~~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~-~~~~Kri 539 (1323)
T 3s4w_B 469 NASAMRLN--AAFVKGILDYLENMSPQQIRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSST-VFKYKLI 539 (1323)
T ss_dssp CHHHHHHT--HHHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred CHHHHhHH--HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCC-chhhhhh
Confidence 55432211 11234444455554555555678888888753321100011122333455666666 6666654
No 179
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=34.27 E-value=36 Score=20.09 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=14.0
Q ss_pred HHhhhhhHHHHHHHHHhhh
Q 015537 24 EGRRRREDNMVEIRKNKRE 42 (405)
Q Consensus 24 ~~r~~r~~~~~~lRk~~r~ 42 (405)
+.|++.++....+||.++.
T Consensus 11 ~~Rkk~eeler~lrk~kk~ 29 (50)
T 1a92_A 11 SGRKKLEELERDLRKLKKK 29 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3577888888888877654
No 180
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=32.57 E-value=1.5e+02 Score=23.16 Aligned_cols=78 Identities=10% Similarity=-0.002 Sum_probs=57.0
Q ss_pred hhhHHHHHhcCchHHHHHhhcCC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhH
Q 015537 317 DMQTQCVIEYQALPCLLNLLSGN-----YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAII 391 (405)
Q Consensus 317 ~~~~~~~~~~g~l~~L~~ll~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~v 391 (405)
......+++.|++..+..+|..- +...||....-+|.++- -+ .+.+.++|+=..++.+-.+... .+.+
T Consensus 66 ~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP-I~---~e~Lk~SglGkvV~~l~k~~~e---t~~n 138 (170)
T 3nfq_A 66 ANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP-VK---TEHLKESGLGRVVIFYTKSKRV---EAQL 138 (170)
T ss_dssp GGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC-CC---HHHHHHHSHHHHHHHHHHCTTS---CHHH
T ss_pred HHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC-CC---HHHHhhCCCCceeeehhcCCcc---cHHH
Confidence 34556788999999999999743 25689999999999985 33 3567788888887766655533 3678
Q ss_pred HHHHHHHHhh
Q 015537 392 YKLAIWLCLV 401 (405)
Q Consensus 392 r~~A~~al~n 401 (405)
|+-|.-.+..
T Consensus 139 krla~~Li~~ 148 (170)
T 3nfq_A 139 ARLAEKLIAE 148 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887766654
No 181
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=32.00 E-value=3.2e+02 Score=25.50 Aligned_cols=190 Identities=14% Similarity=0.126 Sum_probs=110.1
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCH-H-HHHHHHHHHHHHhcCCchh
Q 015537 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYP-Q-LQFEAAWALTNIASGTSEH 151 (405)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~-~-~~~~a~~~L~ni~~~~~~~ 151 (405)
.+..++..|+|+++.+...|+.++. +..+...+...+++..+++++-..+.+ . +....=.++..++++ .-.
T Consensus 117 sve~i~~aL~S~~~~l~~~~ckVI~------~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lssd-eLi 189 (500)
T 3vld_A 117 SAEDLVKALRSEIDPLKVAACRVIE------NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTD-ELI 189 (500)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHH------TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTS-HHH
T ss_pred CHHHHHHHHhcCChHHHHHHHHHhc------ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCch-HHH
Confidence 4678888899998989888888887 267788888999999999988665422 2 555555666677554 335
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC--ChhhHHHHHhcCChHHHHHhhhCCCchhHH----HHHHHH
Q 015537 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD--SPRCRDLVLSQGGLVPLLAQLNGQPKLSML----RNATWT 225 (405)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~--~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~----~~a~~~ 225 (405)
++.+.+ ...|.|...=.+.++-+....+..+.-+... .+++...+.-.+ -..+.+.+ + |+-+. ......
T Consensus 190 rrril~-nnl~lL~~vK~~~~~i~~sRLLdll~il~~~i~~~eF~~~Lfi~~-~~Ei~k~~-d--Dil~fI~ii~yYtkL 264 (500)
T 3vld_A 190 RRRLFD-NNLPYLVSVKGRMETVSFVRLIDFLTIEFQFISGPEFKDIIFCFT-KEEILKSV-E--DILVFIELVNYYTKF 264 (500)
T ss_dssp HHHHHT-TTHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCCTTTCCHHHHCCC-HHHHHHHT-T--SHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhHHHHHHHhcCCCceeHHHHHHHHHHHhcccCcccCCcceeecc-HHHHHhhh-c--chHHHHHHHHHHHHH
Confidence 666665 4567666666656666666666666555433 244444433211 11222333 1 33222 222222
Q ss_pred HHHhhcCCCCCChh--hhhccHHHHHhhhcCC--ChHHH----HHHHHHHHHhccCChhH
Q 015537 226 LSNFCRGKPQPPFD--QVSPALPALAHLIHSN--DDEVL----TDACWALSYLSDGTNDK 277 (405)
Q Consensus 226 l~~l~~~~~~~~~~--~~~~~l~~L~~ll~~~--d~~v~----~~a~~~l~~l~~~~~~~ 277 (405)
+..+-. ....+. .+.+.++.+..+.... ++++. ...+..++.++..+++.
T Consensus 265 l~~~~~--~~~~w~l~~i~p~l~~~~~ly~~~d~~~dv~~f~~s~l~~lfa~lSyl~d~e 322 (500)
T 3vld_A 265 LLEIRN--QDKYWALRHVKKILPVFAQLFEDTENYPDVRAFSTNCLLQLFAEVSRIEEDE 322 (500)
T ss_dssp HHHHHH--TTCGGGHHHHGGGHHHHHHHHHCTTTCHHHHHHSHHHHHHHHHHHTTSSCST
T ss_pred HHHhcc--cchHHHHHHhHHHHHHHHHHhcCchhhhHHHHHhHHHHHHHHHHHhhcccch
Confidence 222222 223233 5578899888888554 45543 34455555565544433
No 182
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=28.35 E-value=2.1e+02 Score=22.32 Aligned_cols=78 Identities=9% Similarity=0.137 Sum_probs=57.1
Q ss_pred hHHHHHHhcCChHHHHHhcCC------CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC-CchhHHHHH
Q 015537 276 DKIQAVIEAGVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEA 348 (405)
Q Consensus 276 ~~~~~~~~~~~l~~L~~lL~~------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a 348 (405)
.....+++.|++..+-.+|.. ++..++...+.+|.++- -..+.+..+|+-..++.+-.++ ..+.+|+-|
T Consensus 67 ~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvV~~l~k~~~et~~nkrla 142 (170)
T 3nfq_A 67 NLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP----VKTEHLKESGLGRVVIFYTKSKRVEAQLARLA 142 (170)
T ss_dssp GGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC----CCHHHHhhCCCCceeeehhcCCcccHHHHHHH
Confidence 334568888999999999853 35579999999998874 2356678888888877777665 256777777
Q ss_pred HHHHHHHhc
Q 015537 349 CWTVSNITA 357 (405)
Q Consensus 349 ~~~L~nl~~ 357 (405)
--.+..-+.
T Consensus 143 ~~Li~~WsR 151 (170)
T 3nfq_A 143 EKLIAEWTR 151 (170)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHH
Confidence 777776653
No 183
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=28.24 E-value=2.3e+02 Score=22.70 Aligned_cols=129 Identities=14% Similarity=0.126 Sum_probs=78.5
Q ss_pred ChHHHHHhhh-----CCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCC---ChHHHHHHHHHHHHhccC
Q 015537 202 GLVPLLAQLN-----GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYLSDG 273 (405)
Q Consensus 202 ~i~~L~~~l~-----~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~ 273 (405)
.+|.++..+. +-.|.......+.....|..++.-........++|.++.++-.. ...++..|+..++.++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 3455554442 33478888888999999999865555566688888877766332 237999999999999854
Q ss_pred ChhHHHHHHhcCChHHHHHhcCCC--CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcC
Q 015537 274 TNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338 (405)
Q Consensus 274 ~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~ 338 (405)
...... -+...+...+.+.+.++ +......|+..|+.+. .+ .+..-++|.+..+.+.
T Consensus 121 ~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG--~~-----~vr~~llP~l~~~~~~ 179 (196)
T 4atg_A 121 YSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS--KN-----VVNTVIREHAEEYKRT 179 (196)
T ss_dssp HTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--HH-----HHHTHHHHHHHHHHHH
T ss_pred hCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH--HH-----HHHHhhhcCHHHHHHH
Confidence 322111 12233455666666544 3455666777776653 22 2333345666655543
No 184
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=28.19 E-value=1.5e+02 Score=22.35 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=42.9
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-CCchhHHHHHhCCChHHHHHhhCC----CC--------HHHHHHHHHHH
Q 015537 117 VVPRFVEFLLREDYPQLQFEAAWALTNIAS-GTSEHTKVVIDHGAVPIFVKLLYS----PS--------DDVREQAVWAL 183 (405)
Q Consensus 117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~-~~~~~~~~~~~~g~i~~L~~lL~~----~~--------~~i~~~a~~~L 183 (405)
+++.|.+-|+..+ +.++..|+.+|-.++. +++.....+...- .+++-+.+ ++ ..|+..|-.++
T Consensus 50 im~~L~kRL~~k~-~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~---~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~ 125 (140)
T 1vdy_A 50 FSEFILKRLDNKS-PIVKQKALRLIKYAVGKSGSEFRREMQRNS---VAVRNLFHYKGHPDPLKGDALNKAVRETAHETI 125 (140)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHHHTTTSCHHHHHHHHHTT---HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-cceeehHHHHHHHHHHhCCHHHHHHHHHhH---HHHHHHHhcCCCCCcccccchhHHHHHHHHHHH
Confidence 4777788888877 8899999999999886 4445555555432 23443332 12 45666665555
Q ss_pred HHhhC
Q 015537 184 GNIAG 188 (405)
Q Consensus 184 ~nl~~ 188 (405)
.-|..
T Consensus 126 ~ll~d 130 (140)
T 1vdy_A 126 SAIFS 130 (140)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 55543
No 185
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=25.53 E-value=4.2e+02 Score=24.74 Aligned_cols=143 Identities=17% Similarity=0.186 Sum_probs=91.8
Q ss_pred HHHHHHhhcCC------ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015537 75 LPVMVAGVWSN------DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (405)
Q Consensus 75 l~~l~~~l~s~------~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~ 148 (405)
++.+.+.|.++ |++...+ .+.++++. -+-+.+.+-=-++.++.-|.+++ +.+...|+.++. .
T Consensus 75 l~~Ik~iL~~~~~~~~lD~~~Li~---Ll~~il~~---~~Fd~VLevysve~i~~aL~S~~-~~l~~~~ckVI~-----~ 142 (500)
T 3vld_A 75 LATIKRFLTSNVSYDSLNYDYLLD---VVDKLVPM---ADFDDVLEVYSAEDLVKALRSEI-DPLKVAACRVIE-----N 142 (500)
T ss_dssp HHHHHHHHHCSSCCTTCCHHHHHH---HHHHHHHH---SCHHHHHHHSCHHHHHHHHTSSC-HHHHHHHHHHHH-----T
T ss_pred HHHHHHHHcCCccccccCHHHHHH---HHHHHHhc---CCHHHHHHhCCHHHHHHHHhcCC-hHHHHHHHHHhc-----c
Confidence 45566666322 4555433 44444432 23456666666889999999987 899999999988 2
Q ss_pred chhHHHHHhCCChHHHHHhhCCCCH--H-HHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHH
Q 015537 149 SEHTKVVIDHGAVPIFVKLLYSPSD--D-VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (405)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~~~~--~-i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~ 225 (405)
+.-+..+...+++..++.++-+.+. . +....=.++..++.+ .-+|..+.+. .. +++..+.+..++.+..-....
T Consensus 143 s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lssd-eLirrril~n-nl-~lL~~vK~~~~~i~~sRLLdl 219 (500)
T 3vld_A 143 SQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTD-ELIRRRLFDN-NL-PYLVSVKGRMETVSFVRLIDF 219 (500)
T ss_dssp CSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTT-TH-HHHHHHHHHCCHHHHHHHHHH
T ss_pred cCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCch-HHHHHHHHHH-hH-HHHHHHhcCCCceeHHHHHHH
Confidence 4556677788999999998877543 3 777777777777643 3355566553 34 455555455666666656666
Q ss_pred HHHhhcC
Q 015537 226 LSNFCRG 232 (405)
Q Consensus 226 l~~l~~~ 232 (405)
+.-+...
T Consensus 220 l~il~~~ 226 (500)
T 3vld_A 220 LTIEFQF 226 (500)
T ss_dssp HHHHHTT
T ss_pred HHHHhcc
Confidence 6655554
No 186
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=22.13 E-value=3.3e+02 Score=22.35 Aligned_cols=73 Identities=10% Similarity=-0.042 Sum_probs=49.9
Q ss_pred HhhhCCCchhHHHHHHH----HHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHH
Q 015537 208 AQLNGQPKLSMLRNATW----TLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 282 (405)
Q Consensus 208 ~~l~~~~~~~~~~~a~~----~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 282 (405)
.....+++.-.++.+.. .+..+.. ..........++..+...+++++.-|+..+.|+|..+...+++.....+
T Consensus 114 ~~W~~s~~~w~rR~ai~~q~~ll~~~~~--k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~al 190 (235)
T 1t06_A 114 DKWIASGDELKMSAGWSCYCWLLGNRKD--NAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEKAV 190 (235)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHHSCG--GGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHhhccc--cCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 33337777777777766 4444111 1223445567777787788999999999999999999877776655444
No 187
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=21.78 E-value=2.6e+02 Score=21.01 Aligned_cols=87 Identities=8% Similarity=-0.063 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHH
Q 015537 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334 (405)
Q Consensus 255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ 334 (405)
+.+.|..-..||+-+.- ....+ +..+-..+....+.-+.+++..+-.|+.............++.+.+..
T Consensus 23 Sk~~I~~LT~~a~~~~~-----~a~~I-----v~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~ 92 (144)
T 1sz9_A 23 SRPIITTLTKLAEENIS-----CAQYF-----VDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKR 92 (144)
T ss_dssp CHHHHHHHHHHHHHTGG-----GHHHH-----HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHH-----HHHHH-----HHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 33556666666665532 22322 344555555567888899999999998654333344666778888888
Q ss_pred hhcCCCchhHHHHHHHHH
Q 015537 335 LLSGNYKKSIKKEACWTV 352 (405)
Q Consensus 335 ll~~~~~~~v~~~a~~~L 352 (405)
..... ++.+|......+
T Consensus 93 ~~~~~-d~~~r~k~~rL~ 109 (144)
T 1sz9_A 93 TYLLV-DNTTRTKLINMF 109 (144)
T ss_dssp HHHTS-CHHHHHHHHHHH
T ss_pred HHHhC-CHHHHHHHHHHH
Confidence 77766 666665544433
No 188
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=20.29 E-value=2.7e+02 Score=20.93 Aligned_cols=91 Identities=8% Similarity=-0.002 Sum_probs=56.7
Q ss_pred CCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHH
Q 015537 213 QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292 (405)
Q Consensus 213 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ 292 (405)
.+.+.+..-..||+.+.-. ...++..+...+....++-...++..+-.++.+........+..++.+.+..
T Consensus 22 nSk~~I~~LT~~a~~~~~~---------a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~ 92 (144)
T 1sz9_A 22 NSRPIITTLTKLAEENISC---------AQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKR 92 (144)
T ss_dssp CCHHHHHHHHHHHHHTGGG---------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHHH---------HHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 3344555555566554332 2456666777776677888888888877777554333455666777777777
Q ss_pred hcCCCCcchHHHHHHHHhHh
Q 015537 293 FLMHPSPSVLIPALRTVGNI 312 (405)
Q Consensus 293 lL~~~~~~v~~~a~~~l~nl 312 (405)
.....++..+....+.+.--
T Consensus 93 ~~~~~d~~~r~k~~rL~~~W 112 (144)
T 1sz9_A 93 TYLLVDNTTRTKLINMFKLW 112 (144)
T ss_dssp HHHTSCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 66666666676666655443
Done!