Query 015539
Match_columns 405
No_of_seqs 117 out of 136
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 14:22:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uz3_A EMSY protein; chromatin 99.9 2.6E-25 9E-30 187.5 10.0 75 47-122 15-89 (102)
2 2fmm_E Protein EMSY; ENT domai 99.9 5.5E-24 1.9E-28 186.4 9.5 73 47-120 7-79 (133)
3 2equ_A PHD finger protein 20-l 97.3 0.00039 1.3E-08 55.4 6.0 54 226-282 9-62 (74)
4 2l8d_A Lamin-B receptor; DNA b 97.1 0.00035 1.2E-08 55.0 3.9 41 228-268 11-51 (66)
5 2dig_A Lamin-B receptor; tudor 97.1 0.00035 1.2E-08 55.2 3.7 41 228-268 14-54 (68)
6 1mhn_A SurviVal motor neuron p 96.8 0.0012 4.2E-08 49.4 4.7 54 229-282 6-59 (59)
7 4a4f_A SurviVal of motor neuro 96.5 0.0038 1.3E-07 47.6 5.5 53 225-277 7-59 (64)
8 3p8d_A Medulloblastoma antigen 96.4 0.0032 1.1E-07 49.5 4.3 41 226-268 6-46 (67)
9 1g5v_A SurviVal motor neuron p 96.3 0.0039 1.3E-07 51.0 4.8 54 226-279 10-63 (88)
10 2ldm_A Uncharacterized protein 95.2 0.00081 2.8E-08 54.7 0.0 49 228-279 8-56 (81)
11 3qii_A PHD finger protein 20; 96.1 0.0048 1.6E-07 50.7 4.3 41 226-268 21-61 (85)
12 2g3r_A Tumor suppressor P53-bi 96.1 0.0026 9E-08 55.3 2.6 43 225-268 3-45 (123)
13 2d9t_A Tudor domain-containing 96.1 0.0079 2.7E-07 47.6 5.1 57 226-282 9-65 (78)
14 3pnw_C Tudor domain-containing 96.0 0.0064 2.2E-07 48.3 4.2 57 226-282 17-73 (77)
15 3s6w_A Tudor domain-containing 95.6 0.012 4.2E-07 43.0 4.1 39 229-267 4-43 (54)
16 1ssf_A Transformation related 95.3 0.014 4.9E-07 52.5 4.3 42 226-268 8-49 (156)
17 2eqj_A Metal-response element- 95.1 0.013 4.3E-07 46.3 3.0 49 228-281 15-63 (66)
18 2eqk_A Tudor domain-containing 92.9 0.081 2.8E-06 43.4 3.7 58 224-282 19-76 (85)
19 2diq_A Tudor and KH domain-con 92.1 0.45 1.5E-05 39.0 7.3 55 226-282 32-87 (110)
20 3fdr_A Tudor and KH domain-con 91.8 0.17 5.7E-06 40.4 4.4 54 226-281 27-81 (94)
21 2m0o_A PHD finger protein 1; t 91.2 0.77 2.6E-05 37.3 7.5 51 226-281 26-76 (79)
22 2xk0_A Polycomb protein PCL; t 90.0 0.52 1.8E-05 37.5 5.4 41 225-268 14-54 (69)
23 4hcz_A PHD finger protein 1; p 89.2 0.29 9.9E-06 37.7 3.4 49 228-281 5-53 (58)
24 3ntk_A Maternal protein tudor; 86.5 0.32 1.1E-05 42.7 2.4 53 226-282 47-100 (169)
25 2wac_A CG7008-PA; unknown func 86.0 0.7 2.4E-05 40.8 4.4 54 226-282 51-105 (218)
26 2rnz_A Histone acetyltransfera 85.1 3.3 0.00011 34.3 7.7 58 228-288 27-87 (94)
27 2eko_A Histone acetyltransfera 83.9 2.1 7.1E-05 34.9 5.9 64 226-290 9-77 (87)
28 2e5q_A PHD finger protein 19; 83.6 1 3.6E-05 35.1 3.8 50 228-282 9-58 (63)
29 4b9w_A TDRD1, tudor domain-con 79.3 2.1 7.1E-05 38.2 4.8 56 226-282 65-120 (201)
30 4b9x_A TDRD1, tudor domain-con 75.9 2 6.7E-05 39.1 3.7 56 226-282 65-120 (226)
31 2e5p_A Protein PHF1, PHD finge 75.5 1.8 6.2E-05 34.3 2.8 48 227-279 10-57 (68)
32 2ro0_A Histone acetyltransfera 74.9 2.2 7.4E-05 35.1 3.3 58 228-288 25-85 (92)
33 2qqr_A JMJC domain-containing 70.3 1.9 6.6E-05 37.1 2.1 48 228-285 7-54 (118)
34 1wgs_A MYST histone acetyltran 67.7 16 0.00053 31.6 7.3 51 227-279 13-67 (133)
35 2eqm_A PHD finger protein 20-l 67.4 10 0.00035 30.6 5.7 49 227-277 20-68 (88)
36 2hqx_A P100 CO-activator tudor 66.9 5.2 0.00018 36.4 4.3 54 226-282 65-119 (246)
37 3ask_A E3 ubiquitin-protein li 66.1 5.4 0.00019 37.7 4.4 63 229-291 5-78 (226)
38 2xdp_A Lysine-specific demethy 66.0 2.1 7.1E-05 37.1 1.4 47 228-284 8-54 (123)
39 3h8z_A FragIle X mental retard 51.0 11 0.00039 32.6 3.5 50 226-279 60-114 (128)
40 3sd4_A PHD finger protein 20; 49.8 16 0.00056 27.7 3.9 46 228-275 14-59 (69)
41 3bdl_A Staphylococcal nuclease 48.6 14 0.00048 38.0 4.3 54 226-282 411-465 (570)
42 3dlm_A Histone-lysine N-methyl 47.3 12 0.0004 35.3 3.2 49 226-278 68-120 (213)
43 1b34_A Protein (small nuclear 46.5 16 0.00054 30.8 3.6 33 225-258 7-39 (119)
44 2guz_B Mitochondrial import in 46.5 17 0.00057 27.9 3.4 31 353-383 22-59 (65)
45 4e9k_A Hypothetical protein; P 46.2 8.9 0.00031 36.7 2.2 39 240-279 167-206 (241)
46 1qsd_A Protein (beta-tubulin b 45.5 32 0.0011 28.8 5.3 38 359-396 31-71 (106)
47 3m9q_A Protein MALE-specific l 41.8 15 0.00053 30.7 2.7 46 228-275 21-77 (101)
48 2f5k_A MORF-related gene 15 is 41.4 16 0.00053 30.6 2.7 46 228-276 24-71 (102)
49 2lcc_A AT-rich interactive dom 41.1 9.8 0.00033 30.0 1.4 51 228-279 7-61 (76)
50 2k48_A Nucleoprotein; viral pr 39.3 24 0.00081 30.1 3.5 29 370-398 34-62 (107)
51 2l2l_A Transcriptional repress 38.9 23 0.00078 25.7 2.8 15 79-93 5-19 (43)
52 3mxz_A Tubulin-specific chaper 38.4 47 0.0016 28.2 5.3 33 363-395 41-73 (116)
53 2ic6_A Nucleocapsid protein; h 37.6 24 0.00081 28.6 3.1 29 370-398 4-32 (78)
54 3m9p_A MALE-specific lethal 3 37.5 23 0.0008 30.1 3.2 49 225-275 18-77 (110)
55 2cp9_A EF-TS, EF-TSMT, elongat 36.5 22 0.00075 27.6 2.7 39 352-396 9-47 (64)
56 1h7c_A Tubulin-specific chaper 34.4 22 0.00077 29.7 2.6 32 363-394 40-71 (108)
57 1y96_A Gemin6, SIP2, GEM-assoc 33.7 20 0.00068 29.3 2.1 46 224-272 11-56 (86)
58 2lrq_A Protein MRG15, NUA4 com 40.0 8.7 0.0003 30.9 0.0 47 228-277 14-62 (85)
59 2vc8_A Enhancer of mRNA-decapp 33.7 38 0.0013 27.8 3.7 39 224-262 3-41 (84)
60 1ub1_A MECP2, attachment regio 33.5 54 0.0019 28.8 5.0 12 316-327 119-130 (133)
61 3gpv_A Transcriptional regulat 33.1 34 0.0011 29.3 3.6 46 351-396 71-116 (148)
62 1q06_A Transcriptional regulat 33.0 35 0.0012 28.7 3.6 45 352-396 56-100 (135)
63 2ic9_A Nucleocapsid protein; h 31.8 30 0.001 29.0 2.9 29 370-398 4-32 (96)
64 2ou3_A Tellurite resistance pr 29.1 2.2E+02 0.0074 24.2 8.1 55 61-116 97-151 (161)
65 3mea_A SAGA-associated factor 28.6 59 0.002 29.7 4.5 41 228-268 118-159 (180)
66 3db3_A E3 ubiquitin-protein li 28.5 71 0.0024 28.9 5.0 64 229-292 13-96 (161)
67 3rpp_A Glutathione S-transfera 27.3 1.2E+02 0.0041 27.1 6.4 60 57-118 113-172 (234)
68 3gp4_A Transcriptional regulat 27.1 43 0.0015 28.5 3.2 46 351-396 57-102 (142)
69 3h8z_A FragIle X mental retard 26.5 45 0.0015 28.8 3.2 24 239-264 13-36 (128)
70 1r4w_A Glutathione S-transfera 25.7 1.4E+02 0.005 26.0 6.5 57 60-118 116-172 (226)
71 1q08_A Zn(II)-responsive regul 25.0 67 0.0023 24.8 3.8 44 353-396 16-60 (99)
72 2bud_A Males-absent on the fir 24.9 1.3E+02 0.0043 24.9 5.5 53 225-279 13-70 (92)
73 4fi5_A Nucleoprotein; structur 24.6 44 0.0015 28.7 2.8 33 366-398 17-49 (113)
74 3r4i_A Citrate lyase; TIM beta 23.6 53 0.0018 32.0 3.5 33 349-385 253-285 (339)
75 1use_A VAsp, vasodilator-stimu 22.4 35 0.0012 25.0 1.5 25 80-116 13-37 (45)
76 1tr8_A Conserved protein (MTH1 22.2 27 0.00094 29.0 1.0 22 373-394 80-101 (102)
77 3uul_A Utrophin; spectrin repe 21.9 85 0.0029 24.2 3.8 31 354-384 16-46 (118)
78 3ih6_A Putative zinc protease; 21.7 1.1E+02 0.0037 25.5 4.7 33 352-384 97-132 (197)
No 1
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=99.92 E-value=2.6e-25 Score=187.46 Aligned_cols=75 Identities=28% Similarity=0.431 Sum_probs=70.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHhhhhcC
Q 015539 47 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASG 122 (405)
Q Consensus 47 ~~~~~~~Ih~LE~~AY~sVLrAF~AQS~~lSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe~rq~gg 122 (405)
.++++.+||+||++||++||+||+||+ +||||||+|||+||++||||||||+++|+++.+|+.|++||++..+..
T Consensus 15 ~~e~~~~l~~LEleAY~svlrAf~AqG-~Lsweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~Ire~~~g~~ 89 (102)
T 1uz3_A 15 RDECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPN 89 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhcchHHHHHHHHHhcCCC
Confidence 358999999999999999999999995 599999999999999999999999999999999999999999987663
No 2
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=99.90 E-value=5.5e-24 Score=186.42 Aligned_cols=73 Identities=29% Similarity=0.439 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHhhhh
Q 015539 47 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120 (405)
Q Consensus 47 ~~~~~~~Ih~LE~~AY~sVLrAF~AQS~~lSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe~rq~ 120 (405)
.++++.+||+||++||++||+||+||+ +||||||+|||+||++||||||||+++|+++.+|+.|++||++..+
T Consensus 7 ~~e~~~~lr~LEleAY~svl~Af~AqG-~LSweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~I~~~~~g 79 (133)
T 2fmm_E 7 RDECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSG 79 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhHHHHHHHHHhhcC
Confidence 468999999999999999999999995 5999999999999999999999999999999999999999998743
No 3
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.29 E-value=0.00039 Score=55.37 Aligned_cols=54 Identities=20% Similarity=0.401 Sum_probs=46.6
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCcc
Q 015539 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (405)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eispe 282 (405)
.--||-+|..+|. |+.||+|+|+..+.. +...++|++. -.|+-...+|+-|+++
T Consensus 9 ~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dy-n~e~v~~~~lrplp~~ 62 (74)
T 2equ_A 9 DFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDG-VIRCLKRMHIKAMPED 62 (74)
T ss_dssp CCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTS-CEEEECGGGEECCCGG
T ss_pred CCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecC-CeEEecHHHCeeCChh
Confidence 5678999999999 999999999999875 8899999999 6777788888877653
No 4
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=97.11 E-value=0.00035 Score=54.99 Aligned_cols=41 Identities=27% Similarity=0.427 Sum_probs=37.6
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 015539 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (405)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ 268 (405)
-||-.|+-|||-|+.||+|.||+++..+-.+.+.|-.+|.+
T Consensus 11 ~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e 51 (66)
T 2l8d_A 11 ADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTEL 51 (66)
T ss_dssp CSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEE
T ss_pred ecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence 36789999999999999999999999999999999998765
No 5
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.08 E-value=0.00035 Score=55.22 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=37.5
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 015539 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (405)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ 268 (405)
-||-.|+-|||-|+.||+|.||+++..+-.+.+.|-.+|.+
T Consensus 14 ~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e 54 (68)
T 2dig_A 14 ADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTEL 54 (68)
T ss_dssp CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEE
T ss_pred ecCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence 37789999999999999999999999999999999997765
No 6
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=96.84 E-value=0.0012 Score=49.40 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=42.3
Q ss_pred ccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCcc
Q 015539 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (405)
Q Consensus 229 IGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eispe 282 (405)
+|-.+..+|.+|+.||.|+|+..+...+...+.|.+---.|+-..-+|+.+++|
T Consensus 6 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~~ 59 (59)
T 1mhn_A 6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE 59 (59)
T ss_dssp TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTCC
T ss_pred cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCCC
Confidence 577899999999999999999998877889999977444455555566666543
No 7
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=96.52 E-value=0.0038 Score=47.60 Aligned_cols=53 Identities=28% Similarity=0.419 Sum_probs=41.5
Q ss_pred CCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccc
Q 015539 225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLK 277 (405)
Q Consensus 225 ~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~ 277 (405)
...-+|-.+..+|.+|+.||.|+|+..+...+...+.|..---.|+=.+-+|+
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lr 59 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLK 59 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEE
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcE
Confidence 46678999999999999999999999998888889999775444443333443
No 8
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=96.36 E-value=0.0032 Score=49.54 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=35.8
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 015539 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (405)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ 268 (405)
.=.||-+|..+| .|+.||+|+|+..+.. +.+.++|+.++.+
T Consensus 6 ~~~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~e 46 (67)
T 3p8d_A 6 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQ 46 (67)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEE
T ss_pred ccccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceE
Confidence 335889999999 9999999999999998 7899999996653
No 9
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.32 E-value=0.0039 Score=51.01 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=42.5
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccC
Q 015539 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279 (405)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~ei 279 (405)
..-||-.|..+|.+|+.||.|+|+..+...+...|+|..---.|+-..-+|+-+
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~ 63 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP 63 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCC
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccC
Confidence 456788999999999999999999999887889999976555555445555544
No 10
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.18 E-value=0.00081 Score=54.71 Aligned_cols=49 Identities=24% Similarity=0.456 Sum_probs=37.7
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccC
Q 015539 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279 (405)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~ei 279 (405)
-+|-+|..+|. |+.||.|+|+..+. .+...++|++++ .|+-.+-+|+-+
T Consensus 8 kvGd~clAkws-Dg~wY~A~I~~v~~-~~~y~V~F~DGn-~E~V~~s~LrPl 56 (81)
T 2ldm_A 8 QINEQVLASWS-DSRFYPAKVTAVNK-DGTYTVKFYDGV-VQTVKHIHVKAF 56 (81)
Confidence 46889999999 99999999999985 468999998854 445445554444
No 11
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=96.13 E-value=0.0048 Score=50.73 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=36.6
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 015539 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (405)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ 268 (405)
.=.||-+|..+| .|+.||.|.|+..+.. +.+.+.|+.++.+
T Consensus 21 ~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~e 61 (85)
T 3qii_A 21 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQ 61 (85)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEE
T ss_pred ccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCeE
Confidence 557899999999 9999999999999987 7899999996653
No 12
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=96.07 E-value=0.0026 Score=55.34 Aligned_cols=43 Identities=26% Similarity=0.505 Sum_probs=37.8
Q ss_pred CCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 015539 225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (405)
Q Consensus 225 ~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ 268 (405)
..++||.+|..+|+++..||-|+|+.+ ...+++.|.+|++...
T Consensus 3 ~~~~~G~rV~AkWsdn~~yYpG~V~~~-~~~~ky~V~FdDg~~~ 45 (123)
T 2g3r_A 3 MNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYEC 45 (123)
T ss_dssp --CCTTCEEEEECTTTCCEEEEEEEEE-EETTEEEEEETTSCEE
T ss_pred CccccceEEEEEeccCCcCcccEEEEe-ccCCeEEEEEcCCCee
Confidence 368999999999998889999999984 7889999999999974
No 13
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=96.05 E-value=0.0079 Score=47.63 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=46.9
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCcc
Q 015539 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (405)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eispe 282 (405)
..-+|..+..+|.+|+.||.|+|+..+...+...|.|-+---.|+-..-+|+.|+++
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~ 65 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE 65 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHH
Confidence 456888999999999999999999998877888888876555566667788888765
No 14
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=95.96 E-value=0.0064 Score=48.25 Aligned_cols=57 Identities=21% Similarity=0.182 Sum_probs=44.4
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCcc
Q 015539 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (405)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eispe 282 (405)
..-+|-.+..+|.+|+.||.|+|+..+...+...|.|-+---.|+=..-+|+.|+++
T Consensus 17 ~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~~ 73 (77)
T 3pnw_C 17 MWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTE 73 (77)
T ss_dssp TCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC---
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECChh
Confidence 356788999999999999999999999877788888876554666667777777665
No 15
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=95.56 E-value=0.012 Score=43.01 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=31.1
Q ss_pred ccceeecccCCCCCceeEEEeecCCCCCceeeeecC-CCc
Q 015539 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTA 267 (405)
Q Consensus 229 IGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~-~t~ 267 (405)
+|-.+..+|.+|+.||.|+|+..+...+...+.|.+ |+.
T Consensus 4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~ 43 (54)
T 3s6w_A 4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNY 43 (54)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCE
T ss_pred CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCe
Confidence 577888999999999999999999877778888865 444
No 16
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=95.25 E-value=0.014 Score=52.54 Aligned_cols=42 Identities=26% Similarity=0.519 Sum_probs=38.3
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 015539 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (405)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ 268 (405)
+++||.||..+|.+++.||-|+|+.+ ...+++.+.+|+|...
T Consensus 8 ~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k 49 (156)
T 1ssf_A 8 NSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYEC 49 (156)
T ss_dssp CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEE
T ss_pred cchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCee
Confidence 67999999999999999999999996 6678899999999975
No 17
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=95.11 E-value=0.013 Score=46.29 Aligned_cols=49 Identities=27% Similarity=0.519 Sum_probs=42.9
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCc
Q 015539 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (405)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eisp 281 (405)
-||.-|..+| .|.-||+|+|+.-|..+|.-.|.|.+|+.- ||..++|.+
T Consensus 15 ~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~----w~~~kdi~~ 63 (66)
T 2eqj_A 15 EEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKS----WVLWKDIQT 63 (66)
T ss_dssp CTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEE----EEETTTEEC
T ss_pred cCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEE----EEEeecccc
Confidence 5788999999 999999999999999999999999999875 777666643
No 18
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.86 E-value=0.081 Score=43.45 Aligned_cols=58 Identities=10% Similarity=0.070 Sum_probs=47.8
Q ss_pred cCCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCcc
Q 015539 224 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (405)
Q Consensus 224 ~~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eispe 282 (405)
....-+|.-|..+.+++|.||.|.|..-...+--|-+.||.|+.+ +-.|-+|+.++|.
T Consensus 19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~-~V~~~~LR~L~~~ 76 (85)
T 2eqk_A 19 PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVEL-VVNVDCLRKLEEN 76 (85)
T ss_dssp CCCCCSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEE-EEETTTEEECCHH
T ss_pred ccCccCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEE-EEEccccccCCHH
Confidence 345667888899999999999999999999999999999999974 4446667777543
No 19
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=92.12 E-value=0.45 Score=38.99 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=39.4
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeee-cCCCcccchhhhccccCCcc
Q 015539 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISPE 282 (405)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvY-D~~t~~EtwEWvdL~eispe 282 (405)
..-+|.-+-.+|.+|+.||.|+|+..+.. +.-.|.| |.|+. |+-.+-+|+.+.++
T Consensus 32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~-e~v~~~~Lr~l~~~ 87 (110)
T 2diq_A 32 TVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDN-GDCPLKDLRALRSD 87 (110)
T ss_dssp CCCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCE-EEECGGGCEECCHH
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCe-EEEehHHhhcCcHH
Confidence 45678889999999999999999999874 4444555 55554 44555666766554
No 20
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=91.83 E-value=0.17 Score=40.36 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=38.0
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeee-cCCCcccchhhhccccCCc
Q 015539 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISP 281 (405)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvY-D~~t~~EtwEWvdL~eisp 281 (405)
..-+|.-+-.+|++|+.||.|.|+.... ++.-.|.| |.|+. |+-..-||+.+.+
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~-e~v~~~~lr~l~~ 81 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDN-GDCPLKDLRALRS 81 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCE-EEECGGGCEECCG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCe-EEEEHHHhhhcCH
Confidence 4568888999999999999999999975 34444555 55554 3444555666654
No 21
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=91.22 E-value=0.77 Score=37.28 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=43.2
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCc
Q 015539 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (405)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eisp 281 (405)
.=.+|.-|-.+| .|.-||-|+|+.-|...+...|.|++++.- |+..++|.+
T Consensus 26 ~f~eGeDVLarw-sDGlfYLGTI~kV~~~~e~ClV~F~D~S~~----W~~~kdi~~ 76 (79)
T 2m0o_A 26 RLWEGQDVLARW-TDGLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP 76 (79)
T ss_dssp CCCTTCEEEBCC-TTSCCCEEEEEEEETTTTEEEEEETTSCEE----EEETTTBCC
T ss_pred eeccCCEEEEEe-cCCCEEeEEEEEeccCCCEEEEEEcCCCeE----EEEeecccc
Confidence 445788899999 568999999999999999999999999975 887777754
No 22
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=90.03 E-value=0.52 Score=37.46 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=32.5
Q ss_pred CCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 015539 225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (405)
Q Consensus 225 ~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ 268 (405)
..=.+|.-|-.+|=| .-||-|+|++- .++.-.|.|++++.-
T Consensus 14 ~~~~~geDVL~rw~D-G~fYLGtIVd~--~~~~ClV~FeD~S~~ 54 (69)
T 2xk0_A 14 VTYALQEDVFIKCND-GRFYLGTIIDQ--TSDQYLIRFDDQSEQ 54 (69)
T ss_dssp CCCCTTCEEEEECTT-SCEEEEEEEEE--CSSCEEEEETTCCEE
T ss_pred cccccCCeEEEEecC-CCEEEEEEEec--CCceEEEEecCCcce
Confidence 345678899999966 89999999774 457777888998874
No 23
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=89.25 E-value=0.29 Score=37.75 Aligned_cols=49 Identities=22% Similarity=0.403 Sum_probs=41.0
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCc
Q 015539 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (405)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eisp 281 (405)
-+|..|-.+|-| .-||-|+|..-|...+...+.+++++.- |+-+++|.+
T Consensus 5 ~~GedVLarwsD-G~fYlGtI~~V~~~~~~clV~F~D~s~~----W~~~kdi~~ 53 (58)
T 4hcz_A 5 WEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP 53 (58)
T ss_dssp CTTCEEEEECTT-SCEEEEEEEEEETTTTEEEEEETTSCEE----EEEGGGEEE
T ss_pred ccCCEEEEEecC-CCEEeEEEEEEecCCCEEEEEEcCCCeE----EEEhHHccc
Confidence 357789999966 8999999999999999999999999875 776666543
No 24
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=86.51 E-value=0.32 Score=42.68 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=38.3
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeee-cCCCcccchhhhccccCCcc
Q 015539 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISPE 282 (405)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvY-D~~t~~EtwEWvdL~eispe 282 (405)
..-+|..+-.+|++|+.||.|.|+...+.. .-.+.| |.|+.+. +-+|+.+.++
T Consensus 47 ~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~---v~~lr~l~~~ 100 (169)
T 3ntk_A 47 DLKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAV---TQQFRQLPEE 100 (169)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEE---ESCEECCCHH
T ss_pred CCCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEE---hhhhhccCHH
Confidence 344677888999999999999999998854 445555 6676654 3466666543
No 25
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=86.01 E-value=0.7 Score=40.84 Aligned_cols=54 Identities=24% Similarity=0.395 Sum_probs=40.0
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeee-cCCCcccchhhhccccCCcc
Q 015539 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISPE 282 (405)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvY-D~~t~~EtwEWvdL~eispe 282 (405)
..-+|..+-.+|.+|+.||.|+|+.... +.-.+.| |.|+. |+..+-+|+.++++
T Consensus 51 ~~~~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~-~~v~~~~l~~l~~~ 105 (218)
T 2wac_A 51 TPKRGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNK-ETLPTNRLAALPPA 105 (218)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCE-EEEEGGGEEECCGG
T ss_pred cCCcCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCe-EEEchHHcccCChh
Confidence 3457888999999999999999999876 5555555 44554 45566677777654
No 26
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=85.14 E-value=3.3 Score=34.35 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=42.1
Q ss_pred cccceeecccCCCCCceeEEEeecCCCC--CceeeeecCCCcccchhhhccccCCcc-CccccC
Q 015539 228 LIGRKVWTRWPEDNHFYEAVITDYNPNE--GRHALVYDINTADETWEWVNLKEISPE-DIKWEG 288 (405)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~t--g~H~LvYD~~t~~EtwEWvdL~eispe-dI~W~~ 288 (405)
-||-+|..++ ++.||+|.|.+-.... -++-|-|.--+.. -.|||....|.-. +++|..
T Consensus 27 ~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~NkR-lDEWV~~~RI~l~~~v~~p~ 87 (94)
T 2rnz_A 27 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKR-LDEWITTDRINLDKEVLYPK 87 (94)
T ss_dssp CTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSCST-TCEEEETTTBCSSSCCCCCC
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcc-cccccCHHHcccccCccCCC
Confidence 5899999997 8899999998866544 3566666655433 3569998888654 477764
No 27
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.93 E-value=2.1 Score=34.94 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=47.8
Q ss_pred CccccceeecccC---CCCCceeEEEeecCCCCC--ceeeeecCCCcccchhhhccccCCccCccccCCC
Q 015539 226 NPLIGRKVWTRWP---EDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEISPEDIKWEGDE 290 (405)
Q Consensus 226 ~~LIGrkV~~~WP---dDn~wyEavItdYn~~tg--~H~LvYD~~t~~EtwEWvdL~eispedI~W~~e~ 290 (405)
.--||-||..+++ .++.||+|.|.+-+...+ ++-|-|.--+.. -.|||....|.-..++|...+
T Consensus 9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkR-lDEWV~~~rl~~~~~~~p~~~ 77 (87)
T 2eko_A 9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNRR-LDEWVTHERLDLKKIQFPKKE 77 (87)
T ss_dssp SCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCSC-CCEEECTTTBCGGGCCCCCCS
T ss_pred cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCcc-cccccCHhHcccccccCCCCC
Confidence 4568999999997 588999999999887543 566777655433 247999988877778886533
No 28
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.64 E-value=1 Score=35.15 Aligned_cols=50 Identities=24% Similarity=0.456 Sum_probs=40.2
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCcc
Q 015539 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (405)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eispe 282 (405)
.+|.-|-.+| .|.-||=|+|+.-|...+.-.+.|.+++.- ||..++|.+-
T Consensus 9 ~eGqdVLarW-sDGlfYlgtV~kV~~~~~~ClV~FeD~s~~----wv~~kdi~~~ 58 (63)
T 2e5q_A 9 TEGQYVLCRW-TDGLYYLGKIKRVSSSKQSCLVTFEDNSKY----WVLWKDIQHA 58 (63)
T ss_dssp CTTCEEEEEC-TTSCEEEEEECCCCSTTSEEEEEETTSCEE----EEEGGGEECC
T ss_pred ecCCEEEEEe-cCCCEEEEEEEEEecCCCEEEEEEccCcee----EEEeeccccc
Confidence 4677888999 457999999999999888888888888875 7776666443
No 29
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=79.32 E-value=2.1 Score=38.21 Aligned_cols=56 Identities=20% Similarity=0.340 Sum_probs=39.6
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCcc
Q 015539 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (405)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eispe 282 (405)
.+-+|.-+-.++++|+.||.|.|++......-....-|.|+.+ +-.+-+|+.+.++
T Consensus 65 ~~~~G~~c~a~~~~d~~wyRa~V~~~~~~~~~~V~~vDyG~~~-~v~~~~l~~l~~~ 120 (201)
T 4b9w_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVDYGNVE-EVTTDQLQAILPQ 120 (201)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEETTTCCEE-EECGGGEEECCGG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEccCCEE-EEEHHHhccChHh
Confidence 3457888889999999999999999876544455555777753 3344456666543
No 30
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=75.89 E-value=2 Score=39.14 Aligned_cols=56 Identities=20% Similarity=0.340 Sum_probs=39.0
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCcc
Q 015539 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (405)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eispe 282 (405)
.+-+|.-+-.++++|+.||.|.|+...+...-+....|.|+.+ +-.+-+|+.+.++
T Consensus 65 ~~~~G~~c~a~~~~d~~WyRa~V~~~~~~~~~~V~~vDyGn~~-~v~~~~l~~l~~~ 120 (226)
T 4b9x_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVDYGNVE-EVTTDQLQAILPQ 120 (226)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSSSEEEEECTTTCCEE-EEEGGGEECCCGG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEecCCEE-EEEHHHhccChHH
Confidence 3457888889999999999999999876543444455777753 3344556666544
No 31
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.48 E-value=1.8 Score=34.26 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=39.3
Q ss_pred ccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccC
Q 015539 227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279 (405)
Q Consensus 227 ~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~ei 279 (405)
=-+|.-|-.+|-| .-||-|+|+.-|...+.-.+.|.+++.- ||..++|
T Consensus 10 f~eGqdVLarWsD-GlfYlGtV~kV~~~~~~ClV~FeD~s~~----wv~~kdi 57 (68)
T 2e5p_A 10 LWEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDI 57 (68)
T ss_dssp CCTTCEEEEECTT-SSEEEEEEEEEETTTTEEEEEETTTEEE----EEETTTE
T ss_pred cccCCEEEEEecC-CcEEEeEEEEEecCCcEEEEEEccCCee----eeeeecc
Confidence 3467788899966 8999999999999888888888888864 6665555
No 32
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=74.92 E-value=2.2 Score=35.14 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=41.7
Q ss_pred cccceeecccCCCCCceeEEEeecCCCC--CceeeeecCCCcccchhhhccccCCcc-CccccC
Q 015539 228 LIGRKVWTRWPEDNHFYEAVITDYNPNE--GRHALVYDINTADETWEWVNLKEISPE-DIKWEG 288 (405)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~t--g~H~LvYD~~t~~EtwEWvdL~eispe-dI~W~~ 288 (405)
-||-+|..++ ++.||+|.|.+-+... -++.|-|.--+.. -.|||....|.-. +++|..
T Consensus 25 ~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~NkR-lDEWV~~~rl~l~~~v~~p~ 85 (92)
T 2ro0_A 25 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKR-LDEWITTDRINLDKEVLYPK 85 (92)
T ss_dssp CTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSCTT-SCEEEEGGGEETTSCEEECC
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcc-cccccCHhHcccccCccCCC
Confidence 4888999997 8899999999766544 4566667654432 2479998888554 477764
No 33
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=70.28 E-value=1.9 Score=37.11 Aligned_cols=48 Identities=23% Similarity=0.408 Sum_probs=36.3
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCccCcc
Q 015539 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIK 285 (405)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eispedI~ 285 (405)
-||.+|+.+|. ++-||.|.|++=.. .--|.+.+|+|+-. .++-||||.
T Consensus 7 ~vGq~V~akh~-ngryy~~~V~~~~~-~~~y~V~F~DgS~s--------~dl~peDIv 54 (118)
T 2qqr_A 7 TAGQKVISKHK-NGRFYQCEVVRLTT-ETFYEVNFDDGSFS--------DNLYPEDIV 54 (118)
T ss_dssp CTTCEEEEECT-TSSEEEEEEEEEEE-EEEEEEEETTSCEE--------EEECGGGBC
T ss_pred ccCCEEEEECC-CCCEEeEEEEEEee-EEEEEEEcCCCCcc--------CCCCHhhcc
Confidence 47899999998 67999999999633 35577778888853 356677763
No 34
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=67.65 E-value=16 Score=31.61 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=36.2
Q ss_pred ccccceeecccCCCCCceeEEEeecCC----CCCceeeeecCCCcccchhhhccccC
Q 015539 227 PLIGRKVWTRWPEDNHFYEAVITDYNP----NEGRHALVYDINTADETWEWVNLKEI 279 (405)
Q Consensus 227 ~LIGrkV~~~WPdDn~wyEavItdYn~----~tg~H~LvYD~~t~~EtwEWvdL~ei 279 (405)
--||-+|..+|+ |+.||+|.|.+-.. ..-.+.|-|.--+.. -.|||....|
T Consensus 13 ~~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR-~DEWV~~~ri 67 (133)
T 1wgs_A 13 VEIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRR-LDEWVDKNRL 67 (133)
T ss_dssp CCTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTTTCSS-CCEEECTTTS
T ss_pred cCCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccCcCCC-ceeecChhhc
Confidence 458999999998 67999999988543 334567777643322 2369987776
No 35
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=67.43 E-value=10 Score=30.65 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=36.7
Q ss_pred ccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccc
Q 015539 227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLK 277 (405)
Q Consensus 227 ~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~ 277 (405)
=-||-||...-+. |.||+|+||.=+....+-.|-||=-+ +.-.|||+..
T Consensus 20 F~vGmkLEA~D~~-~~~~~a~i~~v~~~~~~v~VHfdGW~-~~yDeWv~~d 68 (88)
T 2eqm_A 20 FEIGARLEALDYL-QKWYPSRIEKIDYEEGKMLVHFERWS-HRYDEWIYWD 68 (88)
T ss_dssp CCSSCEEEEECTT-SCEEEEEEEEEETTTTEEEEEESSST-TTEEEEEETT
T ss_pred CCCCCEEEEEcCC-CCeeEEEEEEEeccCCEEEEEECCCC-CcccEEeeCC
Confidence 3588899877655 57999999988877788889998553 3334698754
No 36
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=66.92 E-value=5.2 Score=36.37 Aligned_cols=54 Identities=19% Similarity=0.358 Sum_probs=37.9
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeee-cCCCcccchhhhccccCCcc
Q 015539 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISPE 282 (405)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvY-D~~t~~EtwEWvdL~eispe 282 (405)
..-+|.-+-.+|. |+.||.|.|+...... .-.+.| |.|+.+ +-.+-+|+.++++
T Consensus 65 ~~~~G~~c~a~~~-d~~wyRa~V~~~~~~~-~~~V~~vDyGn~~-~v~~~~lr~l~~~ 119 (246)
T 2hqx_A 65 APRRGEFCIAKFV-DGEWYRARVEKVESPA-KIHVFYIDYGNRE-VLPSTRLGTLSPA 119 (246)
T ss_dssp CCCTTCEEEEECT-TSCEEEEEEEEEEETT-EEEEEETTTCCEE-EECGGGEECCCGG
T ss_pred CCCCCCEEEEEcC-CCCEEEEEEEEEcCCC-eEEEEEEeCCCeE-EEeHHHhhcCCHh
Confidence 4457888899998 8999999999997543 334444 656654 4456677777654
No 37
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=66.06 E-value=5.4 Score=37.66 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=43.4
Q ss_pred ccceeecccCCCCCceeEEEeecCCCC---------CceeeeecCCCcccchh--hhccccCCccCccccCCCC
Q 015539 229 IGRKVWTRWPEDNHFYEAVITDYNPNE---------GRHALVYDINTADETWE--WVNLKEISPEDIKWEGDEP 291 (405)
Q Consensus 229 IGrkV~~~WPdDn~wyEavItdYn~~t---------g~H~LvYD~~t~~EtwE--WvdL~eispedI~W~~e~p 291 (405)
||-.|..+|...+.||||.|.++-..+ -.+++.||.-..+++-+ -.+|+--+-..++|.+=..
T Consensus 5 i~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~~irprar~~~~~~~l~~ 78 (226)
T 3ask_A 5 VNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRARARTIIKWQDLEV 78 (226)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGGGEEECCCCBCCGGGCCT
T ss_pred cCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecccccccccccccCCcccccc
Confidence 778899999999999999999998743 45668888876554332 2234444455677744333
No 38
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=66.01 E-value=2.1 Score=37.15 Aligned_cols=47 Identities=19% Similarity=0.402 Sum_probs=37.2
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCccCc
Q 015539 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDI 284 (405)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eispedI 284 (405)
-||.+|+.+|.+ +-||.|.|++=-. .--+.+.||+|+-. .++-||||
T Consensus 8 ~vGq~V~ak~~n-gryy~~~V~~~~~-~~~y~V~F~DgS~s--------~dl~PedI 54 (123)
T 2xdp_A 8 SVGQTVITKHRN-TRYYSCRVMAVTS-QTFYEVMFDDGSFS--------RDTFPEDI 54 (123)
T ss_dssp CTTCCCCCCCCC-CCCCCCEEEEEEE-EEEEEEEETTSCEE--------EEECGGGB
T ss_pred ccCCEEEEECCC-CcEEeEEEEEEee-EEEEEEEcCCCCcc--------CCCCHhHc
Confidence 478899999985 8999999999775 45578888988854 35667777
No 39
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=50.96 E-value=11 Score=32.56 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=34.4
Q ss_pred CccccceeecccCCCC----CceeEEEeecCCCCCceeeeecCCCcccch-hhhccccC
Q 015539 226 NPLIGRKVWTRWPEDN----HFYEAVITDYNPNEGRHALVYDINTADETW-EWVNLKEI 279 (405)
Q Consensus 226 ~~LIGrkV~~~WPdDn----~wyEavItdYn~~tg~H~LvYD~~t~~Etw-EWvdL~ei 279 (405)
.--+|-+|.++|-.++ +||.|+|+.... ..|.+.|+--. .+| |||.+..|
T Consensus 60 ~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg--~f~~V~y~~~~--~~~~EiV~~~rl 114 (128)
T 3h8z_A 60 EITEGDEVEVYSRANEQEPCGWWLARVRMMKG--DFYVIEYAACD--ATYNEIVTLERL 114 (128)
T ss_dssp CCCTTCEEEEEECC---CCCEEEEEEEEEEET--TEEEEEETTC------CEEECGGGE
T ss_pred CCCCCCEEEEEecCCCCCcCccEEEEEEEeeC--CEEEEEEcCCC--CCcceEEehhhe
Confidence 4468999999999877 899999999985 68888876533 133 46654444
No 40
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=49.81 E-value=16 Score=27.73 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=32.3
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhc
Q 015539 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVN 275 (405)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvd 275 (405)
-||-||...=+.. .||.|+|++-+...++-.|.||--+ ..--+|++
T Consensus 14 ~vGmkLEa~d~~~-p~~~AtV~~v~~~~~~~~VhfdGw~-~~~D~W~~ 59 (69)
T 3sd4_A 14 EVGAQLEARDRLK-NWYPAHIEDIDYEEGKVLIHFKRWN-HRYDEWFC 59 (69)
T ss_dssp STTCEEEEECTTS-CEEEEEEEEEETTTTEEEEEETTSC-GGGCEEEE
T ss_pred CCCCEEEEEECCC-CccccEEEEEeccCCEEEEEeCCCC-CCCCEEEc
Confidence 4677887765554 4699999997666688899998543 22235886
No 41
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=48.55 E-value=14 Score=38.04 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=39.0
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeee-cCCCcccchhhhccccCCcc
Q 015539 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISPE 282 (405)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvY-D~~t~~EtwEWvdL~eispe 282 (405)
.+-+|.-+..+|. |+.||.|+|+..... +.-.+.| |.|+. |+-.+-+|+.++++
T Consensus 411 ~~~~G~~c~a~~~-d~~wyRa~I~~v~~~-~~~~V~fvDyGn~-e~v~~~~Lr~l~~~ 465 (570)
T 3bdl_A 411 APRRGEFCIAKFV-DGEWYRARVEKVESP-AKIHVFYIDYGNR-EVLPSTRLGTLSPA 465 (570)
T ss_dssp CCCTTCEEEEECT-TSCEEEEEEEEEEET-TEEEEEETTTCCE-EEECGGGEECCCGG
T ss_pred CCCcCCEEEEEEC-CCCEEEEEEEEEcCC-CeEEEEEEeCCCe-EEEEHHHCccCCHH
Confidence 4668999999999 899999999999873 4444444 55554 34556667777654
No 42
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=47.30 E-value=12 Score=35.29 Aligned_cols=49 Identities=20% Similarity=0.437 Sum_probs=37.4
Q ss_pred CccccceeecccCCCC--CceeEEEee--cCCCCCceeeeecCCCcccchhhhcccc
Q 015539 226 NPLIGRKVWTRWPEDN--HFYEAVITD--YNPNEGRHALVYDINTADETWEWVNLKE 278 (405)
Q Consensus 226 ~~LIGrkV~~~WPdDn--~wyEavItd--Yn~~tg~H~LvYD~~t~~EtwEWvdL~e 278 (405)
.-.||-||-.+|.+.+ .||-|+|.. +.-..-+++|.||+|-+. ||.+.+
T Consensus 68 ~l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~~~----Yv~~~~ 120 (213)
T 3dlm_A 68 KLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYAS----YVTQSE 120 (213)
T ss_dssp GCCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTSCEE----EECGGG
T ss_pred EEeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCCCcc----eecCce
Confidence 4578999999999875 899999975 222346999999999865 555444
No 43
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=46.48 E-value=16 Score=30.78 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=26.2
Q ss_pred CCccccceeecccCCCCCceeEEEeecCCCCCce
Q 015539 225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRH 258 (405)
Q Consensus 225 ~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H 258 (405)
+..++|++|.+.. -++.-|++++..||.--..+
T Consensus 7 L~~~~gk~V~V~L-k~g~~~~G~L~~~D~~MNlv 39 (119)
T 1b34_A 7 LMKLSHETVTIEL-KNGTQVHGTITGVDVSMNTH 39 (119)
T ss_dssp HHTCTTCEEEEEE-TTCCEEEEEEEEECTTCCEE
T ss_pred HHHhCCCEEEEEE-cCCCEEEEEEEEEcccceEE
Confidence 3568899888755 57799999999999876644
No 44
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=46.47 E-value=17 Score=27.85 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=24.1
Q ss_pred hhhHHHHHHHhhcCCCC-------hhhHHHHHHHHHHH
Q 015539 353 ETLIKEVEKVFAANHPD-------PTDVEKAKRVLKEQ 383 (405)
Q Consensus 353 ~slikeVervf~~~~pD-------p~eiEkAKk~Lkeh 383 (405)
+.+.+=-.|+|..|||| ..+|..||..|..+
T Consensus 22 ~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 22 DKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 33444456778999999 88999999998764
No 45
>4e9k_A Hypothetical protein; PF14717 family protein, DUF4465, structural genomics, joint for structural genomics, JCSG; 2.31A {Bacteroides ovatus}
Probab=46.16 E-value=8.9 Score=36.70 Aligned_cols=39 Identities=21% Similarity=0.486 Sum_probs=29.1
Q ss_pred CCCceeEEEeecCCC-CCceeeeecCCCcccchhhhccccC
Q 015539 240 DNHFYEAVITDYNPN-EGRHALVYDINTADETWEWVNLKEI 279 (405)
Q Consensus 240 Dn~wyEavItdYn~~-tg~H~LvYD~~t~~EtwEWvdL~ei 279 (405)
+..||.-+|+.||.. +-+|-|.=+ ...-.+|+||||+.+
T Consensus 167 ~gD~Fklti~Gyd~~g~Ve~yLAD~-~~iV~~W~~vDLSsL 206 (241)
T 4e9k_A 167 SNDSFKLTIYNYDKTMHVDCYLAEG-TNLLDQWKWVDLTSL 206 (241)
T ss_dssp TTCEEEEEEEETTSSCEEEEEEEET-TEECCSCEEEECGGG
T ss_pred CCCEEEEEEEEECCCCcEEEEEecC-CEEecceEEEccccc
Confidence 678999999999942 234555542 445589999999988
No 46
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=45.53 E-value=32 Score=28.77 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=27.9
Q ss_pred HHHH--hhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 015539 359 VEKV--FAANHP-DPTDVEKAKRVLKEQELALVNAIAKLED 396 (405)
Q Consensus 359 Verv--f~~~~p-Dp~eiEkAKk~LkehEqaL~dAiarL~e 396 (405)
-+|| |.+.++ |+..|-+...+|+|.+.-|-|...||.+
T Consensus 31 ~~riek~k~~~~~dey~iKkq~evl~Et~~mipd~~~Rl~~ 71 (106)
T 1qsd_A 31 EAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIRE 71 (106)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444 455668 9999999999999988777666665543
No 47
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=41.82 E-value=15 Score=30.69 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=32.7
Q ss_pred cccceeecccCC---CCCceeEEEeecCCCC-------CceeeeecCCCcccch-hhhc
Q 015539 228 LIGRKVWTRWPE---DNHFYEAVITDYNPNE-------GRHALVYDINTADETW-EWVN 275 (405)
Q Consensus 228 LIGrkV~~~WPd---Dn~wyEavItdYn~~t-------g~H~LvYD~~t~~Etw-EWvd 275 (405)
-+|-+|-.+++| .+-+|||.|.+-...+ -.+.|-|.= -+-+| |||-
T Consensus 21 ~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~G--Wn~rwDEWV~ 77 (101)
T 3m9q_A 21 HKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQG--WRPSYDRAVR 77 (101)
T ss_dssp CTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETT--SCGGGCEEEC
T ss_pred cCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCC--CCcCceeecC
Confidence 478899999987 6789999999876532 257777742 33456 4873
No 48
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=41.44 E-value=16 Score=30.63 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=32.9
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCC--ceeeeecCCCcccchhhhcc
Q 015539 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNL 276 (405)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg--~H~LvYD~~t~~EtwEWvdL 276 (405)
-||-+|..+| ++.||+|.|.+-+...+ .+.|-|.--+.. -.|||..
T Consensus 24 ~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~GwNkR-~DEWV~~ 71 (102)
T 2f5k_A 24 QEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSGWNKN-WDEWVPE 71 (102)
T ss_dssp CTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETTSCGG-GCEEEEG
T ss_pred CCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCCC-ceeeccH
Confidence 4788999999 68999999998765433 677777754432 1258863
No 49
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=41.11 E-value=9.8 Score=30.02 Aligned_cols=51 Identities=27% Similarity=0.369 Sum_probs=36.5
Q ss_pred cccceeecccCCC--CCceeEEEeecCCCCC--ceeeeecCCCcccchhhhccccC
Q 015539 228 LIGRKVWTRWPED--NHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEI 279 (405)
Q Consensus 228 LIGrkV~~~WPdD--n~wyEavItdYn~~tg--~H~LvYD~~t~~EtwEWvdL~ei 279 (405)
-||-+|..+|++. ..||+|.|.+-+...+ .+.|-|.--+.. -.|||....|
T Consensus 7 ~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwnkr-~DEWV~~~ri 61 (76)
T 2lcc_A 7 LTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWNVR-YDEWVKADRI 61 (76)
T ss_dssp STTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTSCCS-SCEEEEGGGE
T ss_pred CCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCcCCC-ceEecChhhc
Confidence 4899999999953 7899999999876555 357777644332 1368875554
No 50
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=39.27 E-value=24 Score=30.10 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 015539 370 PTDVEKAKRVLKEQELALVNAIAKLEDAS 398 (405)
Q Consensus 370 p~eiEkAKk~LkehEqaL~dAiarL~e~S 398 (405)
|..||+--+-|+.||+.|+-|.-+|.+|-
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe 62 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAE 62 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666778999999999999998764
No 51
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=38.88 E-value=23 Score=25.70 Aligned_cols=15 Identities=47% Similarity=0.895 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhCC
Q 015539 79 EKESLITELRKELRV 93 (405)
Q Consensus 79 eKE~LLTeLR~eL~I 93 (405)
|+|.+|.+||.||++
T Consensus 5 ere~~i~~LreeLR~ 19 (43)
T 2l2l_A 5 ERERMIKQLKEELRL 19 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 789999999999984
No 52
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=38.45 E-value=47 Score=28.23 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=24.9
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 015539 363 FAANHPDPTDVEKAKRVLKEQELALVNAIAKLE 395 (405)
Q Consensus 363 f~~~~pDp~eiEkAKk~LkehEqaL~dAiarL~ 395 (405)
|.+...|+..|-+.+.+|+|.+.-|-|.-.||.
T Consensus 41 mk~e~~dey~iKkq~evL~Et~~mipd~~~RL~ 73 (116)
T 3mxz_A 41 MKDKGADPYDLKQQENVLGESRMMIPDCHKRLE 73 (116)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 446788999999999999888876655555443
No 53
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=37.63 E-value=24 Score=28.57 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 015539 370 PTDVEKAKRVLKEQELALVNAIAKLEDAS 398 (405)
Q Consensus 370 p~eiEkAKk~LkehEqaL~dAiarL~e~S 398 (405)
|..|++--+-|+.||+.|+-|.-+|.+|-
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLkdA~ 32 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAE 32 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777889999999999999998764
No 54
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=37.48 E-value=23 Score=30.12 Aligned_cols=49 Identities=22% Similarity=0.464 Sum_probs=33.7
Q ss_pred CCccccceeecccCC---CCCceeEEEeecCCCC---C----ceeeeecCCCcccchh-hhc
Q 015539 225 YNPLIGRKVWTRWPE---DNHFYEAVITDYNPNE---G----RHALVYDINTADETWE-WVN 275 (405)
Q Consensus 225 ~~~LIGrkV~~~WPd---Dn~wyEavItdYn~~t---g----~H~LvYD~~t~~EtwE-Wvd 275 (405)
+.=-+|-+|..++++ .+-||||.|.+-.... | .+.|-|.- -+.+|+ ||-
T Consensus 18 ~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~G--Wn~~wDEWV~ 77 (110)
T 3m9p_A 18 FKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNG--WNRSWDRWAA 77 (110)
T ss_dssp CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETT--SCGGGCEEEE
T ss_pred CcccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcccccceEEEEEECC--CCcchhhccC
Confidence 344588899999885 2679999999876532 2 57788853 334554 884
No 55
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=36.55 E-value=22 Score=27.55 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=30.9
Q ss_pred chhhHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 015539 352 TETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLED 396 (405)
Q Consensus 352 T~slikeVervf~~~~pDp~eiEkAKk~LkehEqaL~dAiarL~e 396 (405)
|..+||||-...++ =|+.+|+.|.+..=.|.+||.-|.+
T Consensus 9 t~~~Vk~LRe~TGa------g~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 9 SKELLMKLRRKTGY------SFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp CCHHHHHHHHHHCC------CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC------CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45788998877663 4788999999998888888887753
No 56
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=34.42 E-value=22 Score=29.72 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=23.3
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 015539 363 FAANHPDPTDVEKAKRVLKEQELALVNAIAKL 394 (405)
Q Consensus 363 f~~~~pDp~eiEkAKk~LkehEqaL~dAiarL 394 (405)
|.+.++|+..|-+...+|+|.+.-|-|...||
T Consensus 40 ~k~e~~Dey~iKkq~evl~Et~~mipd~~~Rl 71 (108)
T 1h7c_A 40 MRAEDGENYDIKKQAEILQESRMMIPDCQRRL 71 (108)
T ss_dssp HHHHHCSCTHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 55667899999999999988876554444444
No 57
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=33.72 E-value=20 Score=29.26 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=34.2
Q ss_pred cCCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchh
Q 015539 224 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWE 272 (405)
Q Consensus 224 ~~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwE 272 (405)
-..+||||+|++.- .|+..|+|++..|||.+--=.|+-- ..+++|-
T Consensus 11 el~~li~KeV~V~l-~dg~~y~G~l~tvDp~s~sIvL~n~--~~~~~~~ 56 (86)
T 1y96_A 11 EWQDYIYKEVRVTA-SEKNEYKGWVLTTDPVSANIVLVNF--LEDGSMS 56 (86)
T ss_dssp HHHHTTTCEEEEEE-TTTEEEEEEEEEECTTTCCEEEEEE--CTTSCEE
T ss_pred HHHhhcCCEEEEEE-cCCCEEEEEEEEECCCceEEEEeec--ccCCeEE
Confidence 35789999999987 5678999999999998765555522 3344443
No 58
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=39.96 E-value=8.7 Score=30.95 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=31.4
Q ss_pred cccceeecccCCCCCceeEEEeecCCCC--CceeeeecCCCcccchhhhccc
Q 015539 228 LIGRKVWTRWPEDNHFYEAVITDYNPNE--GRHALVYDINTADETWEWVNLK 277 (405)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~t--g~H~LvYD~~t~~EtwEWvdL~ 277 (405)
-||-+|..+|. +.||+|.|.+-.... ..+.|-|.--+.. -.|||...
T Consensus 14 ~~Gekv~~~~~--~~~y~AkIl~i~~~~~~~~YyVHY~GwNkR-~DEWV~~~ 62 (85)
T 2lrq_A 14 VDGERVLCFHG--PLIYEAKVLKTKPDATPVEYYIHYAGWSKN-WDEWVPEN 62 (85)
Confidence 48999999994 479999999877543 3556666543322 23588643
No 59
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=33.65 E-value=38 Score=27.75 Aligned_cols=39 Identities=10% Similarity=0.093 Sum_probs=32.3
Q ss_pred cCCccccceeecccCCCCCceeEEEeecCCCCCceeeee
Q 015539 224 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY 262 (405)
Q Consensus 224 ~~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvY 262 (405)
+.+.|||..|-..==++-+-|+|+|++.|+.+..=.|+-
T Consensus 3 Ma~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~ 41 (84)
T 2vc8_A 3 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTR 41 (84)
T ss_dssp --CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEE
T ss_pred ccccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEeh
Confidence 447899999999999999999999999999876655553
No 60
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=33.48 E-value=54 Score=28.78 Aligned_cols=12 Identities=58% Similarity=1.024 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCC
Q 015539 316 VSGAGRGRGTMK 327 (405)
Q Consensus 316 ~~~~grgrg~~k 327 (405)
-++.|||||++|
T Consensus 119 ~~~~~~~~~~~~ 130 (133)
T 1ub1_A 119 SPGSGRGRGRPK 130 (133)
T ss_dssp CCCCCCCCCCCC
T ss_pred CCCCCCCCCCCC
Confidence 356789999988
No 61
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=33.13 E-value=34 Score=29.29 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=32.8
Q ss_pred cchhhHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 015539 351 HTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLED 396 (405)
Q Consensus 351 ~T~slikeVervf~~~~pDp~eiEkAKk~LkehEqaL~dAiarL~e 396 (405)
..+-=|+|+.+++.........++..+.+|.+|.+.|...|++|..
T Consensus 71 ~~G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~ 116 (148)
T 3gpv_A 71 NTGMPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEK 116 (148)
T ss_dssp TTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445578888888732223345677888999999999888888764
No 62
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=32.95 E-value=35 Score=28.69 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=29.4
Q ss_pred chhhHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 015539 352 TETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLED 396 (405)
Q Consensus 352 T~slikeVervf~~~~pDp~eiEkAKk~LkehEqaL~dAiarL~e 396 (405)
.+-=++|+..++..........+..+.+|.+|.+.|...|++|..
T Consensus 56 ~G~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~ 100 (135)
T 1q06_A 56 VGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQS 100 (135)
T ss_dssp TTCCHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888887632211223566778888888888877777653
No 63
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=31.76 E-value=30 Score=28.96 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 015539 370 PTDVEKAKRVLKEQELALVNAIAKLEDAS 398 (405)
Q Consensus 370 p~eiEkAKk~LkehEqaL~dAiarL~e~S 398 (405)
|..|++--+-|+.||+.|+-|.-+|.+|-
T Consensus 4 M~~i~eLq~e~~~~E~QL~~A~QKLkdA~ 32 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAE 32 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777789999999999999998764
No 64
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=29.14 E-value=2.2e+02 Score=24.17 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHH
Q 015539 61 AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIRE 116 (405)
Q Consensus 61 AY~sVLrAF~AQS~~lSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe 116 (405)
.....++.-+| -+.++-.-+.+|.++-..|+||..+-..++.++......++.|-
T Consensus 97 ~l~~l~~vA~A-DG~~~~~E~~~L~~iA~~Lgls~~~~~~l~~~~~~~~~~~~~r~ 151 (161)
T 2ou3_A 97 ILLSAIWVSAA-DGELHEKEKAKIRKMATILGIKEEIVDQLEQLYYYEAALRQKRL 151 (161)
T ss_dssp HHHHHHHHHHT-TSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556 36799999999999999999999999999999988776666665
No 65
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=28.57 E-value=59 Score=29.67 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=33.5
Q ss_pred cccceeecccCCCCCceeEEEeecCCC-CCceeeeecCCCcc
Q 015539 228 LIGRKVWTRWPEDNHFYEAVITDYNPN-EGRHALVYDINTAD 268 (405)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~-tg~H~LvYD~~t~~ 268 (405)
=.|.+|...||+--.||.|+|..=... ++.+.|.+|..+.+
T Consensus 118 ~~G~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~L~FEdde~~ 159 (180)
T 3mea_A 118 QKEQLVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTSYA 159 (180)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEECCSSTTCCEEEEEBCTTST
T ss_pred CCCCEEEEeCCCCceeeEEEEecCCCCCCCcEEEEEcCCCcc
Confidence 368999999999999999999986443 37888888877643
No 66
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=28.49 E-value=71 Score=28.92 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=45.0
Q ss_pred ccceeecccCCCCCceeEEEee-cCC-----------------CCCceeeeecCCCcccchh--hhccccCCccCccccC
Q 015539 229 IGRKVWTRWPEDNHFYEAVITD-YNP-----------------NEGRHALVYDINTADETWE--WVNLKEISPEDIKWEG 288 (405)
Q Consensus 229 IGrkV~~~WPdDn~wyEavItd-Yn~-----------------~tg~H~LvYD~~t~~EtwE--WvdL~eispedI~W~~ 288 (405)
||--|..+=.+-..||||.|.. +-. +.-.++|.||.-..+.+.+ -.|++--+-.-|+|..
T Consensus 13 inelVDarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv~~~~~~iRpRARt~l~w~~ 92 (161)
T 3db3_A 13 VNEYVDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRARARTIIKWQD 92 (161)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGCEEEEEGGGEECCCCCBCCGGG
T ss_pred ecceeeeeccCCCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeEecchhccccceEEeccHHH
Confidence 5556677777789999999987 432 4467899999887765554 3455555677888976
Q ss_pred CCCC
Q 015539 289 DEPG 292 (405)
Q Consensus 289 e~pg 292 (405)
=.+|
T Consensus 93 L~vG 96 (161)
T 3db3_A 93 LEVG 96 (161)
T ss_dssp CCTT
T ss_pred CCcC
Confidence 4444
No 67
>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*
Probab=27.26 E-value=1.2e+02 Score=27.15 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHhh
Q 015539 57 VEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWR 118 (405)
Q Consensus 57 LE~~AY~sVLrAF~AQS~~lSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe~r 118 (405)
...+.+.++.+|++.+.. .....+.|.++=.+++++.++=..++..+.+++....|++-.
T Consensus 113 ~~~~~~~al~~A~~~~g~--di~d~~~L~~~a~~~GLd~~~~~~~l~~~~s~~~~~~l~~~~ 172 (234)
T 3rpp_A 113 MLEKASRELWMRVWSRNE--DITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETT 172 (234)
T ss_dssp GHHHHHHHHHHHHHTSCC--CCSSHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHccCHHHHHHHHHHH
Confidence 345677888999999754 445678899999999999988888888888888777777744
No 68
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=27.10 E-value=43 Score=28.53 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=31.8
Q ss_pred cchhhHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 015539 351 HTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLED 396 (405)
Q Consensus 351 ~T~slikeVervf~~~~pDp~eiEkAKk~LkehEqaL~dAiarL~e 396 (405)
..+-=++|+.+++....-....++..+.+|.+|.+.|...|++|..
T Consensus 57 ~~G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~ 102 (142)
T 3gp4_A 57 RAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQE 102 (142)
T ss_dssp HTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577888877622112235677888999999999988888764
No 69
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=26.52 E-value=45 Score=28.84 Aligned_cols=24 Identities=17% Similarity=0.509 Sum_probs=19.6
Q ss_pred CCCCceeEEEeecCCCCCceeeeecC
Q 015539 239 EDNHFYEAVITDYNPNEGRHALVYDI 264 (405)
Q Consensus 239 dDn~wyEavItdYn~~tg~H~LvYD~ 264 (405)
++..||+|+|+++ .+..-.+.|+.
T Consensus 13 ~~G~~y~a~V~~v--~~d~~~V~f~n 36 (128)
T 3h8z_A 13 SNGAFYKGFVKDV--HEDSVTIFFEN 36 (128)
T ss_dssp TTSCEEEEEEEEE--CSSEEEEEETT
T ss_pred CCCCEEEEEEEEE--eCCcEEEEEcc
Confidence 5589999999998 45678888963
No 70
>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13
Probab=25.68 E-value=1.4e+02 Score=26.01 Aligned_cols=57 Identities=11% Similarity=0.138 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHhh
Q 015539 60 DAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWR 118 (405)
Q Consensus 60 ~AY~sVLrAF~AQS~~lSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe~r 118 (405)
+.+.++.+|++.+. ..+..+..|.++=.+++++.++=..++..+++++....|++..
T Consensus 116 ~~~~alf~a~~~~~--~~i~~~~~L~~~a~~~Gl~~~d~~~~~~~~~s~~~~~~v~~~~ 172 (226)
T 1r4w_A 116 KVSRELWMRIWSRD--EDITESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETT 172 (226)
T ss_dssp HHHHHHHHHHHTSC--CCCSSHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CCCCCHHHHHHHHHHcCCCchhHHHHHHHcCCHHHHHHHHHHH
Confidence 44566777777754 3455667788899999999887888888888887777777754
No 71
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=25.03 E-value=67 Score=24.84 Aligned_cols=44 Identities=14% Similarity=0.332 Sum_probs=29.3
Q ss_pred hhhHHHHHHHhhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 015539 353 ETLIKEVEKVFAAN-HPDPTDVEKAKRVLKEQELALVNAIAKLED 396 (405)
Q Consensus 353 ~slikeVervf~~~-~pDp~eiEkAKk~LkehEqaL~dAiarL~e 396 (405)
+.=++|+..++... .++...++..+.+|++|-+.|...|++|..
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~ 60 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQS 60 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33367777777632 233224667888899988888888877653
No 72
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=24.85 E-value=1.3e+02 Score=24.88 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=35.2
Q ss_pred CCccccceeecccCCCCCceeEEEeecCCCC-----CceeeeecCCCcccchhhhccccC
Q 015539 225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNE-----GRHALVYDINTADETWEWVNLKEI 279 (405)
Q Consensus 225 ~~~LIGrkV~~~WPdDn~wyEavItdYn~~t-----g~H~LvYD~~t~~EtwEWvdL~ei 279 (405)
+++-=|.+|..+|. ++.||+|.|.+-.... -++-+-|.--+.. -.|||....|
T Consensus 13 i~~~~~e~vlc~~~-dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkR-lDEWV~~~RL 70 (92)
T 2bud_A 13 ISENPDKIYFIRRE-DGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRR-LDGWVGRHRI 70 (92)
T ss_dssp STTCTTSCEEEECT-TSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTT-TCEEEETTTE
T ss_pred ecCCCCCEEEEEeC-CCCEEEEEEEEEeeccCCCCCcEEEEEeCCcccc-cccccCHHHh
Confidence 33334779999997 7799999998855433 3566777654433 2468875554
No 73
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=24.64 E-value=44 Score=28.70 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=25.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 015539 366 NHPDPTDVEKAKRVLKEQELALVNAIAKLEDAS 398 (405)
Q Consensus 366 ~~pDp~eiEkAKk~LkehEqaL~dAiarL~e~S 398 (405)
.-|-.+.|++--+-|+.||+.|+-|.-+|.+|-
T Consensus 17 ~~~~~~~ieeLq~Ei~~~E~QL~~ArQKLkdA~ 49 (113)
T 4fi5_A 17 QGPGSMTMEELQREINAHEGQLVIARQKVRDAE 49 (113)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777888888889999999999999998764
No 74
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.24A {Burkholderia xenovorans}
Probab=23.59 E-value=53 Score=31.96 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=25.0
Q ss_pred eecchhhHHHHHHHhhcCCCChhhHHHHHHHHHHHHH
Q 015539 349 ILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQEL 385 (405)
Q Consensus 349 i~~T~slikeVervf~~~~pDp~eiEkAKk~LkehEq 385 (405)
.+|-.. |.-|+++|+ |++.||++|+++|..-|+
T Consensus 253 ~IHP~Q-I~~in~~f~---Ps~~ei~~A~~il~a~~~ 285 (339)
T 3r4i_A 253 SIHPAQ-IEAIVAAFA---PRDEEITTATEILLAAQS 285 (339)
T ss_dssp ESSHHH-HHHHHHHTS---CCTHHHHHHHHHHHHHHH
T ss_pred eeCHHH-HHHHHHHhC---CCHHHHHHHHHHHHHHHH
Confidence 345544 445888887 999999999999987543
No 75
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=22.44 E-value=35 Score=25.04 Aligned_cols=25 Identities=40% Similarity=0.655 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHH
Q 015539 80 KESLITELRKELRVSDEEHRELLSKVNADDIILRIRE 116 (405)
Q Consensus 80 KE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe 116 (405)
|++||.++|+||. ++ .++.|.+||.
T Consensus 13 KqEIL~E~RkElq-----------K~-K~EIIeAi~~ 37 (45)
T 1use_A 13 KQELLEEVKKELQ-----------KV-KEEIIEAFVQ 37 (45)
T ss_dssp HHHHHHHHHHHHH-----------HH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------HH-HHHHHHHHHH
Confidence 7889999999874 33 4566677765
No 76
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=22.18 E-value=27 Score=29.03 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 015539 373 VEKAKRVLKEQELALVNAIAKL 394 (405)
Q Consensus 373 iEkAKk~LkehEqaL~dAiarL 394 (405)
-++|++.|+++-=.|++||-.|
T Consensus 80 ~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 80 REDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHh
Confidence 4799999999999999999877
No 77
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=21.92 E-value=85 Score=24.23 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=25.7
Q ss_pred hhHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 015539 354 TLIKEVEKVFAANHPDPTDVEKAKRVLKEQE 384 (405)
Q Consensus 354 slikeVervf~~~~pDp~eiEkAKk~LkehE 384 (405)
+-|.|+|..+....|-+..++.++..|+.|+
T Consensus 16 ~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~ 46 (118)
T 3uul_A 16 TWLLSAEDTFQEQDDISDDVEDVKEQFATHE 46 (118)
T ss_dssp HHHHHHHHHHHTSCCCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 4478899998877777888999999999885
No 78
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=21.70 E-value=1.1e+02 Score=25.54 Aligned_cols=33 Identities=6% Similarity=0.133 Sum_probs=22.9
Q ss_pred chhhHHHHHHHhh---cCCCChhhHHHHHHHHHHHH
Q 015539 352 TETLIKEVEKVFA---ANHPDPTDVEKAKRVLKEQE 384 (405)
Q Consensus 352 T~slikeVervf~---~~~pDp~eiEkAKk~LkehE 384 (405)
.+.+++.|...+. ....+..|+++||+.|+..-
T Consensus 97 ~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~ 132 (197)
T 3ih6_A 97 QDKALQTLTATLESLSSKPFSQEELERARSKWLTAW 132 (197)
T ss_dssp HHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 4455555555543 45789999999999887653
Done!