BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015540
(405 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6BDR8|NSE4_SCHPO Non-structural maintenance of chromosome element 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=nse4 PE=1 SV=1
Length = 300
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 135/287 (47%), Gaps = 16/287 (5%)
Query: 55 TVQRRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEAL 114
++ +R LR +Y +++K+Q+ R +L ++ + +L V P E DA
Sbjct: 3 SIDKRDLRKRYRNLINKVQESRLELVDEENNNLYETITTANDLFSSVDAPTEATLDA--- 59
Query: 115 LDITSTL-VTSVKSQSNEGVTPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSIN--WKDV 171
L +T T+ + S+K++ P F L T + N +S N I+ W +
Sbjct: 60 LLLTKTVDLASIKARQLHIGRP-KFNIELFTKNIKQFLNYPTSHSNVTRIQEIDTAWSRL 118
Query: 172 GLAVSPFLSACHGCSTMLGPMKTEVKQRKVVVRKKREK-PTQTAQPEEVDDSE-AVEKTD 229
G S + M+GP+ K+R + R++ +K P QP +++ ++ +
Sbjct: 119 GKLASNCEKQPASLNLMVGPLSFRKKERNIQRRERLQKAPNVLTQPTMLNERNITTQENN 178
Query: 230 TDKNMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHL 289
T KN+ + +L+ + V I N +S+ QTVENLF +SFL K+G+ + NE G +
Sbjct: 179 TTKNVLHISRLLQAHQPVNFLKFITNPQSYPQTVENLFYVSFLFKEGKAALVENESGILM 238
Query: 290 VAPRNAPSADSVMSGQVKYSHFV-------FRYDFKDWKLMKDVVPA 329
+ R P+ D V++G+++ V + K++ + + ++P
Sbjct: 239 LETRIPPTDDQVVAGEIRNIQLVLDMTMDLYENIIKEYNIKESIIPT 285
>sp|Q2TBI1|NSE4A_BOVIN Non-structural maintenance of chromosomes element 4 homolog A
OS=Bos taurus GN=NSMCE4A PE=2 SV=1
Length = 382
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 123/280 (43%), Gaps = 21/280 (7%)
Query: 59 RVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDIT 118
R +R +Y A+++ +Q R+D+ S K +L+E L V + RE V DA L+ +
Sbjct: 83 RQIRHQYRALINSVQQNREDILNA-SDKLTEVLEEANTLFNGVSRAREAVLDAHFLV-LA 140
Query: 119 STLVTSVKSQSNEGVTPTDFVSCLLTMFGESNSNRLSSQ----GNNNAQMSI----NWKD 170
S L Q + D + + T+ N L ++ +++ + +WK
Sbjct: 141 SDLGKEKAKQLRSDLNSFDMLRYVETLLTHMGVNPLEAEELIRDEDSSDLEFIVYDSWKI 200
Query: 171 VGLAVSPFLSACHGCSTMLGPMKTEV---KQRKVVVRKKREKPTQTAQPEEVDDSEAVEK 227
G + H +LG ++ E K R RK R Q A P ++ E +
Sbjct: 201 SGKTAENTFNKTHTFHFLLGSIQGECPVPKPRIERPRKVRMIEEQQAMPAQLKRMEESHQ 260
Query: 228 TDTDKNMTTMFEILRR------KKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIA 281
T+K + + +L+ + +++ SF +TVEN+F +SF+++DG I
Sbjct: 261 EATEKEVERILGLLQTYFQEDPDTPMSFFDFVVDPHSFPRTVENIFHVSFIIRDGFARIR 320
Query: 282 VNEHGFHLVAPRNAPSADSVMSGQVKYSHFVFRYDFKDWK 321
++ ++ P N + +S + Q++ + + ++DW+
Sbjct: 321 LDRDRLPVIEPVNI-NEESGGNTQIR-NQAIIALSYRDWE 358
>sp|Q9NXX6|NSE4A_HUMAN Non-structural maintenance of chromosomes element 4 homolog A
OS=Homo sapiens GN=NSMCE4A PE=1 SV=2
Length = 385
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 122/276 (44%), Gaps = 25/276 (9%)
Query: 36 NGADENLDNESTRTNQPQDTVQRRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQ 95
+ DE +D S Q R +R +Y A+++ +Q R+D+ K +L+E
Sbjct: 62 DSGDEMMDPASLEAEADQGLC--RQIRHQYRALINSVQQNREDILNA-GDKLTEVLEEAN 118
Query: 96 NLHRDVQKPREQVADAEALLDITSTLVTSVKSQSNEGVTPTD---FVSCLLTMFGES--- 149
L +V + RE V DA L+ + S L Q ++ D +V LLT G +
Sbjct: 119 TLFNEVSRAREAVLDAHFLV-LASDLGKEKAKQLRSDLSSFDMLRYVETLLTHMGVNPLE 177
Query: 150 NSNRLSSQGNNNAQMSI--NWKDVGLAVSPFLSACHGCSTMLGPMKTEV--------KQR 199
+ + + + + + +WK G + H +LG + E + R
Sbjct: 178 AEELIRDEDSPDFEFIVYDSWKITGRTAENTFNKTHTFHFLLGSIYGECPVPKPRVDRPR 237
Query: 200 KV-VVRKKREKPTQTAQPEEVDDSEAVEKTDTDKNMTTMFEILRRKKSVRLE--SLILNR 256
KV V++++R P Q + EE EA EK + ++ + + R + +++
Sbjct: 238 KVPVIQEERAMPAQLRRMEE-SHQEATEK-EVERILGLLQTYFREDPDTPMSFFDFVVDP 295
Query: 257 RSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAP 292
SF +TVEN+F +SF+++DG I +++ ++ P
Sbjct: 296 HSFPRTVENIFHVSFIIRDGFARIRLDQDRLPVIEP 331
>sp|A6QPC8|EID3_BOVIN EP300-interacting inhibitor of differentiation 3 OS=Bos taurus
GN=EID3 PE=2 SV=1
Length = 379
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 125/298 (41%), Gaps = 37/298 (12%)
Query: 59 RVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALL--- 115
R +R +Y ++ +Q RDD+ S L+E L V + RE D++ L+
Sbjct: 84 RSIRKQYRQLIYTVQQNRDDIVNTASDSLTEALEEANVLFDAVSRTREAALDSQFLVLAS 143
Query: 116 DITSTLVTSVKSQSN--EGVTPTDFVSCLLTM-FGESNSNRLSSQGNNNAQMSINWKDVG 172
D+ + S N V DF+ + + + E + + ++N +S W+ V
Sbjct: 144 DLGKEKAKHLNSDMNFFNQVAFCDFLFIFVGLNWMEDDERDPLNNCDDNIALSF-WETVQ 202
Query: 173 LAVSPFLSACHGCSTMLGPMKTEVKQRKV------VVRKKREK---PTQTAQPEEVDDSE 223
+ +S + G K E RK V+K E PT+ + + + E
Sbjct: 203 KEATSCISQAETFHFLFGSFKPESAARKPRRNHRRKVQKMEENGVMPTKLRKLDLSGNQE 262
Query: 224 AVEKTDTDKNMTTMFEILRRKKS--VRLESLILNRRSFAQTVENLFALSFLVKDGRVEIA 281
A EK + ++ + + R+ V +++ SF++TVEN+F +SF+++DG I
Sbjct: 263 ATEK-EVERILGLLQTYFRKYPDTPVSYFEFVIDPNSFSRTVENIFYVSFIIRDGFARIR 321
Query: 282 VNEHGFHLVAPRNA--------PSADSVMSGQVKYSHFVFRYDFKDWKLMKDVVPAGE 331
+++ ++ P N PS S G + S +DW K++V A E
Sbjct: 322 LDQDRLPILEPININLAGEGNDPSFHSRKQGVISLS-------LQDW---KNIVAAFE 369
>sp|A5LFW4|EID3_MACFA EP300-interacting inhibitor of differentiation 3 OS=Macaca
fascicularis GN=EID3 PE=2 SV=1
Length = 371
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 111/257 (43%), Gaps = 28/257 (10%)
Query: 59 RVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDIT 118
R +R +Y ++ ++ R D+ + L+E L V + RE DA+ L+ +
Sbjct: 76 RSIRRQYRQLMYCVRQNRGDIVNSANNSLTEALEEANVLFDGVSRTREAALDAQFLV-MA 134
Query: 119 STLVTSVKSQSNEGVTPTD-FVSC-LLTMFG-----ESNSNRLSSQGNNNAQMSINWKDV 171
S L Q N + + C L +FG E + LS ++N +S WK +
Sbjct: 135 SDLGKEKAKQLNSDLNFFNQLAFCDFLFLFGGLNWMEGEPDDLS-DCDDNIALSF-WKAM 192
Query: 172 GLAVSPFLSACHGCSTMLGPMKTEV--------KQRKVVVRKKREKPTQTAQPEEVDDSE 223
+ ++ + G K E Q+KV RK E + ++D S
Sbjct: 193 EKEATSWMVKAETFHFVFGSFKLEPSAPKPRLEHQKKV--RKMEENGNMPTKLRKLDLSS 250
Query: 224 AVEKTDTDKNMTTMFEILR---RKKS---VRLESLILNRRSFAQTVENLFALSFLVKDGR 277
E T+ KN+ + +L+ RK V +++ SF++TVEN+F +SF+V+DG
Sbjct: 251 YPEATE--KNVERILGLLQTYFRKYPDTPVSYFEFVIDPNSFSRTVENIFYVSFIVRDGF 308
Query: 278 VEIAVNEHGFHLVAPRN 294
I ++E ++ P N
Sbjct: 309 ARIRLDEDRLPILEPMN 325
>sp|Q8N140|EID3_HUMAN EP300-interacting inhibitor of differentiation 3 OS=Homo sapiens
GN=EID3 PE=1 SV=1
Length = 333
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 114/256 (44%), Gaps = 26/256 (10%)
Query: 59 RVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALL--- 115
R +R +Y ++ ++ R+D+ + L+E L V + RE DA L+
Sbjct: 38 RSIRRQYRQLMYCVRQNREDIVSSANNSLTEALEEANVLFDGVSRTREAALDARFLVMAS 97
Query: 116 DITSTLVTSVKSQSN--EGVTPTDFVSCLLTM-FGESNSNRLSSQGNNNAQMSINWKDVG 172
D+ + S N + DF+ + + + E + ++LS +++ +S WK +
Sbjct: 98 DLGKEKAKQLNSDMNFFNQLAFCDFLFLFVGLNWMEGDPDKLS-DCDDSIALSF-WKAIE 155
Query: 173 LAVSPFLSACHGCSTMLGPMKTE--------VKQRKVVVRKKREKPTQTAQPEEVDDSEA 224
+ ++ + G K E Q+KV RK E + +++D S
Sbjct: 156 KEATSWMVKAETFHFVFGSFKLERSAPKPRLEHQKKV--RKMEENGNMPTKLQKLDLSSY 213
Query: 225 VEKTDTDKNMTTMFEILR---RKKS---VRLESLILNRRSFAQTVENLFALSFLVKDGRV 278
E T+ KN+ + +L+ RK V +++ SF++TVEN+F +SF+V+DG
Sbjct: 214 PEATE--KNVERILGLLQTYFRKYPDTPVSYFEFVIDPNSFSRTVENIFYVSFIVRDGFA 271
Query: 279 EIAVNEHGFHLVAPRN 294
I ++E ++ P N
Sbjct: 272 RIRLDEDRLPILEPMN 287
>sp|P43124|NSE4_YEAST Non-structural maintenance of chromosome element 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSE4 PE=1
SV=1
Length = 402
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 16/175 (9%)
Query: 166 INWKDVGLAVSPFLSACHGCSTMLGPMKTEVKQRKVVVRKKR-----EKPTQTAQPEEVD 220
NW +G + ++GP+ E K R + R++ EK T +
Sbjct: 218 FNWFRIGALYNTISKNAPITDHLMGPLSIEKKPRVLTQRRRNNDQVGEKITAEKITQHSL 277
Query: 221 DSEAVEKT--DTDKNMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRV 278
+S E T K + + L + S+ L I++ SF++++ENLF SFL+K+G++
Sbjct: 278 NSTQQETTPEQVKKCFKKLSKKLGPEGSINLFKFIIDPNSFSRSIENLFYTSFLIKEGKL 337
Query: 279 EIAVNEHGFHLVAPRNAPSADSVMSGQVK--------YSHFVFRYDFKDW-KLMK 324
+ +E G + + + S S +++ +H +F+ D W KL+K
Sbjct: 338 LMEHDEEGLPTIKIKQSISHTDSRSKEIERQRRRAAHQNHIIFQMDMPTWRKLIK 392
>sp|Q3V124|EID3_MOUSE EP300-interacting inhibitor of differentiation 3 OS=Mus musculus
GN=Eid3 PE=1 SV=1
Length = 375
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 114/282 (40%), Gaps = 23/282 (8%)
Query: 59 RVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDIT 118
R +R +Y ++ +Q R+D+ S + L+E L V + RE DA+ L+ +
Sbjct: 81 RKIRRQYRQLIYTVQQNREDIVNTASDTLSEALEEANVLFDGVSRTREAALDAQFLV-LA 139
Query: 119 STLVTSVKSQSNEGVT---PTDFVSCLLTMFGES---NSNRLSSQGNNNAQMSINWKDVG 172
S L Q N + P F LL G + + S +++ +S W +
Sbjct: 140 SDLGKEKAKQLNTDMNFFNPIAFCDLLLLFVGFNWVEEECKEFSDCDDSIVLSF-WGMLH 198
Query: 173 LAVSPFLSACHGCSTMLGPMKTE---------VKQRKVVVRKKREKPTQTAQPEEVDDSE 223
+ ++ + G K E +R + + PT+ + + + E
Sbjct: 199 EEATSWMLQAETFHFIFGSFKAERSARKPRLGCHKRACKMEGSGDMPTKLRRLDVHANQE 258
Query: 224 AVEKTDTDKNMTTMFEILRRKKS--VRLESLILNRRSFAQTVENLFALSFLVKDGRVEIA 281
EK + ++ + + ++ V +++ SF++TVEN+F +SF+++DG I
Sbjct: 259 TTEK-EVERILGLLQTYFQKYPDTPVSYFEFVIDPNSFSRTVENIFYVSFIIRDGFARIR 317
Query: 282 VNEHGFHLVAPRNAPSADSVMSGQVKYS--HFVFRYDFKDWK 321
+++ ++ P N D S Y V +DWK
Sbjct: 318 LDQDRLPILEPTNVSQVDD-ESDSYSYCRKQGVISLSLQDWK 358
>sp|Q4V8G2|EID3_RAT EP300-interacting inhibitor of differentiation 3 OS=Rattus
norvegicus GN=Eid3 PE=2 SV=2
Length = 387
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 107/257 (41%), Gaps = 18/257 (7%)
Query: 59 RVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDIT 118
R +R +Y ++ +Q R+D+ S L+E L V + RE DA+ L+ +
Sbjct: 93 RSIRRQYRQLIYTVQQNREDIVNTASDSLTEALEEANVLFDGVSRTREAALDAQFLV-LA 151
Query: 119 STLVTSVKSQSNEGVTPTDFVS-C-LLTMFGESNSNRLSSQGNNNAQMSIN---WKDVGL 173
S L Q N ++ + V+ C LL +F N + + SI W +
Sbjct: 152 SDLGKEKAKQLNSDMSFFNHVAFCELLLVFVGLNWMEEECEELSECDESIALSFWNMLHK 211
Query: 174 AVSPFLSACHGCSTMLGPMKTEVKQRK---------VVVRKKREKPTQTAQPEEVDDSEA 224
+ ++ + G K E RK + + PT+ + + + E
Sbjct: 212 EATAWMLQAETFHFIFGSFKAERSARKPRQEHHKRACKMEGNGDMPTKLRKLDVHANQET 271
Query: 225 VEKTDTDKNMTTMFEILRRKKS--VRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAV 282
EK + ++ + + ++ V +++ SF++TVEN+F +SF+++DG I +
Sbjct: 272 TEK-EVERILGLLQTYFQKYPDTPVSYFEFVIDPNSFSRTVENIFYVSFIIRDGFARIRL 330
Query: 283 NEHGFHLVAPRNAPSAD 299
++ ++ P N D
Sbjct: 331 DQDRLPILEPTNVNQVD 347
>sp|P55525|Y4KE_RHISN Uncharacterized protein y4kE OS=Rhizobium sp. (strain NGR234)
GN=NGR_a02910 PE=4 SV=1
Length = 347
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 215 QPEEVDDSEAVEKTDTDKNMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVK 274
QPE + D + + KT+ D N T +L ++ SV LE +L + F + + LV+
Sbjct: 236 QPEGMADRQKIGKTEGDGNWTVPLHVLSKRPSVMLELDVLP-QGFRPIAQAFMEDTALVR 294
Query: 275 D------GRVEIAVNEHG 286
D G V V EHG
Sbjct: 295 DTKPLATGPVRF-VREHG 311
>sp|P25644|PAT1_YEAST DNA topoisomerase 2-associated protein PAT1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PAT1 PE=1
SV=4
Length = 796
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
Query: 70 SKIQDQRDDL--TRVDSKKFNTILKEV------QNLHRDVQKPREQVADAEALLDITSTL 121
SK++DQ+ + D+K+ NT+L ++ +N R +Q PR+Q +D +AL D+T +L
Sbjct: 369 SKLKDQQAAAGNSSQDNKQANTVLGKISSTLNSKNPRRQLQIPRQQPSDPDALKDVTDSL 428
>sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream virus (isolate Blicca
bjoerkna L./Germany/DF24/00) GN=rep PE=1 SV=1
Length = 6872
Score = 33.1 bits (74), Expect = 4.3, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 17/101 (16%)
Query: 50 NQPQDTVQRRVLRSKYL-------AVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQ 102
+QP + +V+R Y+ +L+ + T ++S+ F TI+K+V+ LH Q
Sbjct: 4062 HQPDSYILNQVVRHNYVLAHDPETIILTTVNP-----THLESEPFQTIVKKVRKLHALYQ 4116
Query: 103 KPREQVADAEALLDITSTLVTSVKSQSNEGVTPTD---FVS 140
+ EQ +D L + ++ +KS E PT+ FVS
Sbjct: 4117 EISEQSSDDTELCH--AYILALIKSTVLEAQMPTEKINFVS 4155
>sp|Q008X5|R1A_WBV24 Replicase polyprotein 1a OS=White bream virus (isolate Blicca
bjoerkna L./Germany/DF24/00) GN=1a PE=1 SV=1
Length = 4555
Score = 32.7 bits (73), Expect = 5.7, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 17/101 (16%)
Query: 50 NQPQDTVQRRVLRSKYL-------AVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQ 102
+QP + +V+R Y+ +L+ + T ++S+ F TI+K+V+ LH Q
Sbjct: 4062 HQPDSYILNQVVRHNYVLAHDPETIILTTVNP-----THLESEPFQTIVKKVRKLHALYQ 4116
Query: 103 KPREQVADAEALLDITSTLVTSVKSQSNEGVTPTD---FVS 140
+ EQ +D L + ++ +KS E PT+ FVS
Sbjct: 4117 EISEQSSDDTELCH--AYILALIKSTVLEAQMPTEKINFVS 4155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,189,935
Number of Sequences: 539616
Number of extensions: 5555665
Number of successful extensions: 16789
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 16731
Number of HSP's gapped (non-prelim): 119
length of query: 405
length of database: 191,569,459
effective HSP length: 120
effective length of query: 285
effective length of database: 126,815,539
effective search space: 36142428615
effective search space used: 36142428615
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)