Query 015540
Match_columns 405
No_of_seqs 149 out of 262
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:16:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2866 Uncharacterized conser 100.0 2E-55 4.3E-60 432.4 21.0 333 1-341 1-345 (349)
2 PF08743 Nse4_C: Nse4 C-termin 100.0 1.7E-37 3.6E-42 258.0 8.8 93 245-337 1-93 (93)
3 COG5125 Uncharacterized conser 100.0 9.6E-34 2.1E-38 260.5 13.7 238 60-335 15-259 (259)
4 PF15412 Nse4-Nse3_bdg: Bindin 97.6 0.00019 4.1E-09 54.5 5.7 43 110-152 1-45 (56)
5 PF08251 Mastoparan_2: Mastopa 65.8 3.9 8.5E-05 22.6 1.1 12 166-177 1-12 (14)
6 PF02616 ScpA_ScpB: ScpA/B pro 45.6 28 0.0006 33.3 4.2 56 236-292 185-241 (242)
7 PF09905 DUF2132: Uncharacteri 42.3 35 0.00075 26.8 3.4 35 131-185 7-42 (64)
8 PF14445 Prok-RING_2: Prokaryo 38.8 11 0.00023 28.4 0.1 21 255-275 1-21 (57)
9 KOG3631 Alpha-parvin and relat 36.3 22 0.00047 35.7 1.8 31 247-277 302-332 (365)
10 PRK00104 scpA segregation and 31.2 1.1E+02 0.0024 29.6 5.9 63 229-292 174-237 (242)
11 COG1354 scpA Rec8/ScpA/Scc1-li 29.7 1.2E+02 0.0026 29.5 5.8 66 229-294 174-240 (248)
12 PF02698 DUF218: DUF218 domain 28.5 68 0.0015 28.0 3.6 41 234-276 56-96 (155)
13 PF09012 FeoC: FeoC like trans 26.6 46 0.001 25.6 1.9 47 235-283 3-49 (69)
14 PF12510 Smoothelin: Smootheli 26.5 64 0.0014 24.6 2.5 18 54-71 36-53 (54)
No 1
>KOG2866 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2e-55 Score=432.43 Aligned_cols=333 Identities=35% Similarity=0.573 Sum_probs=278.7
Q ss_pred Ccccccccc---CCCCCCCCCCchhHHHHHHHHHhhhcCCCCccccCccC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhH
Q 015540 1 MRRAVKREA---GSSSRGRVDDSSEQLLRTVKREKLSRNGADENLDNEST-RTNQPQDTVQRRVLRSKYLAVLSKIQDQR 76 (405)
Q Consensus 1 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dp~Q~~~eRR~LR~~YR~L~~~i~~~r 76 (405)
||+++|||. |.++..|.++..++.++.|+.|.++++++....-..+. -...+|.+.+||.||+.|+.|+++++..+
T Consensus 1 ~~~s~~~~~e~~g~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~i~s~~~~l~~~~q~~K 80 (349)
T KOG2866|consen 1 MRKSVKREPEITGKSRVVRRDRMDSESPSRVKKEPRSKTLCAQPRRDDPPEQLEERQEISDRRAIRSQYLALQNSSQDLK 80 (349)
T ss_pred CCCccccCcccCCCccccccccccccCccccccchhhhhhhcccCcCCCCcccccccchhHHHHHHHHHHHHHHHHHhhH
Confidence 799999998 66666699999999999999999999999887542221 13445678899999999999999999999
Q ss_pred HhhcccCchHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHhcCCCCCccc
Q 015540 77 DDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITSTLVTSVKSQS-NEGVTPTDFVSCLLTMFGESNSNRLS 155 (405)
Q Consensus 77 ~dl~~~~s~~l~e~L~ead~Lf~~Vk~prEa~lDAe~L~~la~~l~~s~k~~~-~~g~d~~dFvskLl~~~g~~~~~~~~ 155 (405)
+++.....+.+.++++.+++||+.|..++|+++||++++.+|.....+++.+. ..+..+.+++..+..-|+..+..+.-
T Consensus 81 ~d~~~~~~~~~neI~~~v~~l~qe~~~~~e~i~da~~~l~~a~~~is~~~k~~~~~s~~~~~d~~~~~~~f~~~~~ri~~ 160 (349)
T KOG2866|consen 81 DDLDKADVDKENEILNEVENLHQEVRLPREDIADAENLLDLAASDISKAKKQRATDSVSDVEDTNALMSSFKLTSLRISH 160 (349)
T ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhhccCcCchhHHHHHhhcccchhhhhhc
Confidence 99999989999999999999999999999999999999887766555555443 45688888888877666654443321
Q ss_pred CCC--CCCccccCCHHHHHhhhcccccCCCCCccccCCCCcccccccccccc--ccCCCCcccCCcccccc-hhhhccch
Q 015540 156 SQG--NNNAQMSINWKDVGLAVSPFLSACHGCSTMLGPMKTEVKQRKVVVRK--KREKPTQTAQPEEVDDS-EAVEKTDT 230 (405)
Q Consensus 156 ~d~--dd~~~~~~~W~kLG~~a~~~fr~~P~~~fLlGPL~~E~K~Rk~~qR~--r~~k~~~~~~Peel~~~-d~~~k~~T 230 (405)
+.. +-..+..+.|+.+|..++.++...++|+||+||+++|.|+|+.+.|+ +..++.+.+.|++|.+. ...++++|
T Consensus 161 d~n~~d~~~~~~~~w~~~gf~~~~~~~~s~~~~~mvgp~~~e~k~r~~~r~r~r~q~~~~~~a~p~~~~~~~~t~q~~~t 240 (349)
T KOG2866|consen 161 DENFQDRLALFHGKWKRKGFLVPSTVNVSCGCDFMVGPLSVEKKQRKPKRRRNRKQVKPKEPAKPEQLDDKNITEQESTT 240 (349)
T ss_pred ccccchhccccccchhhhcccccceeccccccceeecceeEeeccccccccccccccCcCccCCchhhchhhhhhhccch
Confidence 111 11123457999999999999999999999999999999999986322 33457788999999984 44566778
Q ss_pred HHHHHHHHHHHHhhcC--ccccccccCCcchhHHHHHHHHHhhheecCeEEEEEcCCCceeEeeCCCCCccccccCCCcc
Q 015540 231 DKNMTTMFEILRRKKS--VRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADSVMSGQVKY 308 (405)
Q Consensus 231 ~~~v~~i~~~L~k~~~--v~lf~fVINP~SFsQTVENlFylSFLVKDGrv~I~~D~dG~p~I~p~~~p~~~~~~s~~~~~ 308 (405)
.+++..|+++|++.++ |+||+|||||+||+||||||||||||||||+|.|..|++|+|++.+ ..+++..+
T Consensus 241 ~~~~~i~~~ll~k~~~e~i~yfkfI~nP~SFsrTVENlFylSFLikdg~~~i~~d~~g~~~~~~--------~~s~~~~~ 312 (349)
T KOG2866|consen 241 EENKQIMLQLLKKEGPEPINYFKFIINPNSFSRTVENLFYLSFLIKDGKAEIENDENGLPEVNS--------KMSGGQAY 312 (349)
T ss_pred hHHHHHHHHHHHhcCCCccchhheeeCcchhHHHHHHHHHHhheecCCeEEEEecCCCcccccc--------eecccccc
Confidence 8888888899999888 9999999999999999999999999999999999999999877754 23567789
Q ss_pred eeEEEEecHHHHHHHHHHcCCCCCCCCCCCCCC
Q 015540 309 SHFVFRYDFKDWKLMKDVVPAGEELMPHRESSN 341 (405)
Q Consensus 309 ~Q~I~sLd~~~Wk~lie~~~I~EplIphR~~~~ 341 (405)
+|+|+++||.+|..|.+.|+|.+|||++|.-..
T Consensus 313 ~q~v~~~~y~~~e~mvk~~~i~e~m~~~~~~~~ 345 (349)
T KOG2866|consen 313 NQFVERLDYRDWEPMVKHVNISEPMITRRQTIE 345 (349)
T ss_pred cceeeeechhhHHHHHHHHhccccccCcccccc
Confidence 999999999999999999999999999998664
No 2
>PF08743 Nse4_C: Nse4 C-terminal; InterPro: IPR014854 Nse4 is a component of the Smc5/6 DNA repair complex. It forms interactions with Smc5 and Nse1 [].
Probab=100.00 E-value=1.7e-37 Score=257.99 Aligned_cols=93 Identities=38% Similarity=0.722 Sum_probs=87.0
Q ss_pred cCccccccccCCcchhHHHHHHHHHhhheecCeEEEEEcCCCceeEeeCCCCCccccccCCCcceeEEEEecHHHHHHHH
Q 015540 245 KSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADSVMSGQVKYSHFVFRYDFKDWKLMK 324 (405)
Q Consensus 245 ~~v~lf~fVINP~SFsQTVENlFylSFLVKDGrv~I~~D~dG~p~I~p~~~p~~~~~~s~~~~~~Q~I~sLd~~~Wk~li 324 (405)
.+|+||+|||||+||+||||||||+|||||||+|+|..|++|+|+|.++.++......+++..++|+|++|||++|+.||
T Consensus 1 ~~i~~~~fvinP~SFsqTVENiF~lSFLVkdG~v~i~~d~~g~p~i~~~~~~~~~~~~~~~~~~~q~I~~ld~~~W~~li 80 (93)
T PF08743_consen 1 EPIDLFEFVINPKSFSQTVENIFYLSFLVKDGRVKIEKDEDGLPVISPCDPPESEEQESDNDSRSQFILSLDYEDWQELI 80 (93)
T ss_pred CCcchhhheeCcchHHHHHHHHHHHHHHHhcCeEEEEECCCCCeeeccCCccchhhhhccCCCCceEEEEcCHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999966666666667778899999999999999999
Q ss_pred HHcCCCCCCCCCC
Q 015540 325 DVVPAGEELMPHR 337 (405)
Q Consensus 325 e~~~I~EplIphR 337 (405)
++|+|+|||||||
T Consensus 81 ~~~~i~e~~i~hR 93 (93)
T PF08743_consen 81 EKYNITEPMIPHR 93 (93)
T ss_pred HHhCCCCcCCCCC
Confidence 9999999999999
No 3
>COG5125 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9.6e-34 Score=260.52 Aligned_cols=238 Identities=19% Similarity=0.337 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHHHhHHhhcccCchHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHhhc---cCCCCCHH
Q 015540 60 VLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITSTLVTSVKSQ---SNEGVTPT 136 (405)
Q Consensus 60 ~LR~~YR~L~~~i~~~r~dl~~~~s~~l~e~L~ead~Lf~~Vk~prEa~lDAe~L~~la~~l~~s~k~~---~~~g~d~~ 136 (405)
+|--+|..|.+++.--+.|++.. +-.|.+.+.-.|-+|+..+-+.+.-+||..- .++..+. +.+.- .-..+++.
T Consensus 15 ~i~~r~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~n~~~~r~~~s~~~~~~a~~~-~~~s~~~-~~r~~~d~~~~~~t~~ 91 (259)
T COG5125 15 EVHDRYLNLLQEMRLLKEDLLED-KCRLDKLVSTSNMLFKRIKTSSELKLDAKIT-ALSTKLA-CTRMEKDINLEDITPG 91 (259)
T ss_pred HHHHHHhhhHHHHHHhhHHHHHH-HHhHHHHhhhhHHHHhhccchhhhhhhhhhh-hhhhccc-cccCccccchhhcCch
Confidence 56677888888888777777654 4458888888999999999888877777653 2222111 11111 11233443
Q ss_pred HHHHHHHHHhcCCCCCcccCCCCCCccccCCHHHHHhhhcccccCCCCCccccCCCCccccccccccccccCC-CCcccC
Q 015540 137 DFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAVSPFLSACHGCSTMLGPMKTEVKQRKVVVRKKREK-PTQTAQ 215 (405)
Q Consensus 137 dFvskLl~~~g~~~~~~~~~d~dd~~~~~~~W~kLG~~a~~~fr~~P~~~fLlGPL~~E~K~Rk~~qR~r~~k-~~~~~~ 215 (405)
-.+..+...|-+ .+.++|.-|. + .|.|||++++|+|..++|++... +...+.
T Consensus 92 ~~~~~~r~~~l~---------------------~f~~ya~~~s-----i-~m~GPLSf~KK~R~~~~RrR~Q~~~~~~t~ 144 (259)
T COG5125 92 TLVELARKDLLH---------------------DFYRYAMDCS-----V-GMRGPLSFSKKHREAPSRRRAQSQRSRQTL 144 (259)
T ss_pred hHHHHHHHHHHH---------------------HHHHHHHhcc-----c-ceecceeeeeccccchhhHHHhhccccccC
Confidence 333333222211 1222222111 1 28999999999999888776543 334555
Q ss_pred Ccccccchhh-hccc--hHHHHHHHHHHHHhhcCccccccccCCcchhHHHHHHHHHhhheecCeEEEEEcCCCceeEee
Q 015540 216 PEEVDDSEAV-EKTD--TDKNMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAP 292 (405)
Q Consensus 216 Peel~~~d~~-~k~~--T~~~v~~i~~~L~k~~~v~lf~fVINP~SFsQTVENlFylSFLVKDGrv~I~~D~dG~p~I~p 292 (405)
|+........ +++. +.+++.+|-++|...++|+||+|||||+||+||||||||+|||+|+|++.++.|++|+|+|..
T Consensus 145 p~t~~~~NiT~QE~~~e~~K~~~~iSrlL~~~g~~N~fKFIidP~Sfs~tiENLFY~SFL~KEGKa~le~dE~G~l~i~~ 224 (259)
T COG5125 145 PETEVPTNITRQEDSVEEPKILAQISRLLAEKGRTNYFKFIIDPRSFSKTIENLFYLSFLLKEGKAFLEFDEDGTLYVVS 224 (259)
T ss_pred cceecccccccccCCcchhhHHHHHHHHhcccCCcceeEEecCcchhhHHHHHHHHHHHHHhcChhheeecCCCcEEEEe
Confidence 6655544433 3332 688999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCCCCccccccCCCcceeEEEEecHHHHHHHHHHcCCCCCCCC
Q 015540 293 RNAPSADSVMSGQVKYSHFVFRYDFKDWKLMKDVVPAGEELMP 335 (405)
Q Consensus 293 ~~~p~~~~~~s~~~~~~Q~I~sLd~~~Wk~lie~~~I~EplIp 335 (405)
... -..+..|.||.|||++|..+|+.|+|+.|+|.
T Consensus 225 ~~s--------~~~s~~h~i~~m~~~~~~~~i~~~~is~~~~~ 259 (259)
T COG5125 225 EGS--------EGASTGHLVVEMTYDEYLRIVERMGISKAMIG 259 (259)
T ss_pred eee--------eccccccEEEEeccHHHHHHHHHhCCcccccC
Confidence 321 12334599999999999999999999999984
No 4
>PF15412 Nse4-Nse3_bdg: Binding domain of Nse4/EID3 to Nse3-MAGE
Probab=97.55 E-value=0.00019 Score=54.52 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHhcCCCCC
Q 015540 110 DAEALLDITSTLVTSVKSQS--NEGVTPTDFVSCLLTMFGESNSN 152 (405)
Q Consensus 110 DAe~L~~la~~l~~s~k~~~--~~g~d~~dFvskLl~~~g~~~~~ 152 (405)
||++|+.+|.....+++++. ..+|++++||++|++||+.....
T Consensus 1 DS~~Lv~aSdla~~ka~~lk~~~~~fd~deFv~~l~~fm~~~~~~ 45 (56)
T PF15412_consen 1 DSRLLVLASDLAAEKARNLKFGGSGFDVDEFVSKLKTFMGGNRFE 45 (56)
T ss_pred CcHHHHHHHHHHHHHHHHhccCCCccCHHHHHHHHHHHhCcccCC
Confidence 89999877776666676553 57999999999999999986654
No 5
>PF08251 Mastoparan_2: Mastoparan peptide; InterPro: IPR013214 Mastoparan (MP) peptides I, II and III are extracted from the venom gland of Protopolybia exigua (Neotropical social wasp). They are tetradecapeptides presenting from seven to ten hydrophobic amino acid residues and from two to four lysine residues in their primary sequences. These peptides cause the degranulation of mast cells. Protopolybia-MP-I also causes haemolysis of erythrocytes.
Probab=65.76 E-value=3.9 Score=22.59 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=9.8
Q ss_pred CCHHHHHhhhcc
Q 015540 166 INWKDVGLAVSP 177 (405)
Q Consensus 166 ~~W~kLG~~a~~ 177 (405)
+||-+||..++-
T Consensus 1 inwlklgk~v~d 12 (14)
T PF08251_consen 1 INWLKLGKMVID 12 (14)
T ss_pred CcHHHHHHHHHh
Confidence 589999998753
No 6
>PF02616 ScpA_ScpB: ScpA/B protein; InterPro: IPR003768 This family represents ScpA, which along with ScpB (IPR005234 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes [].
Probab=45.64 E-value=28 Score=33.33 Aligned_cols=56 Identities=29% Similarity=0.363 Sum_probs=45.5
Q ss_pred HHHHHHHhhcCccccccccCCcchhHHHHHHHHHhhheecCeEEEEEcCC-CceeEee
Q 015540 236 TMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEH-GFHLVAP 292 (405)
Q Consensus 236 ~i~~~L~k~~~v~lf~fVINP~SFsQTVENlFylSFLVKDGrv~I~~D~d-G~p~I~p 292 (405)
.++..|...+.++|.+++=+ .+=..-|--+.++=+|+|+|+|.|..++. |..+|.+
T Consensus 185 ~l~~~L~~~~~~~f~~l~~~-~~r~~~V~tFLAlLeL~k~~~i~i~Q~e~fgdI~I~~ 241 (242)
T PF02616_consen 185 ELLDKLSKKGWVSFSELFEE-PSRSEVVVTFLALLELVKQGKIEIEQEEPFGDIYIEL 241 (242)
T ss_pred HHHHhhccCCceeHHHHcCc-CCcCeeHHHHHHHHHHhhcCcEEEEEcCCCCceEEEe
Confidence 35556767788999998777 77777888899999999999999998775 7666654
No 7
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=42.34 E-value=35 Score=26.83 Aligned_cols=35 Identities=20% Similarity=0.491 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcccCCCCCCccccCCHHHHHhhhc-ccccCCCCC
Q 015540 131 EGVTPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAVS-PFLSACHGC 185 (405)
Q Consensus 131 ~g~d~~dFvskLl~~~g~~~~~~~~~d~dd~~~~~~~W~kLG~~a~-~~fr~~P~~ 185 (405)
.|++++..+..|+.+|| |..||.... .||..-|++
T Consensus 7 HGvtLe~il~~Lv~~yG--------------------W~~L~~~i~i~CF~~~Psi 42 (64)
T PF09905_consen 7 HGVTLETILTELVEHYG--------------------WEELGERININCFKNNPSI 42 (64)
T ss_dssp SS--HHHHHHHHHHHT---------------------HHHHHHHTTSSSTTSS--H
T ss_pred cchhHHHHHHHHHHHhC--------------------HHHHHhhcccccCCCCCch
Confidence 59999999999998886 999999875 699888875
No 8
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=38.78 E-value=11 Score=28.45 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=18.6
Q ss_pred CCcchhHHHHHHHHHhhheec
Q 015540 255 NRRSFAQTVENLFALSFLVKD 275 (405)
Q Consensus 255 NP~SFsQTVENlFylSFLVKD 275 (405)
||+||+|-+=.|-..||-++|
T Consensus 1 DP~SFsry~CDLCn~~~p~~~ 21 (57)
T PF14445_consen 1 DPHSFSRYSCDLCNSSHPISE 21 (57)
T ss_pred ChhHHhhHhHHhhcccCcHHH
Confidence 799999999999988887766
No 9
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton]
Probab=36.33 E-value=22 Score=35.65 Aligned_cols=31 Identities=35% Similarity=0.414 Sum_probs=24.8
Q ss_pred ccccccccCCcchhHHHHHHHHHhhheecCe
Q 015540 247 VRLESLILNRRSFAQTVENLFALSFLVKDGR 277 (405)
Q Consensus 247 v~lf~fVINP~SFsQTVENlFylSFLVKDGr 277 (405)
++|+.|.+-|+||.+-|.|.=+-==|.+||-
T Consensus 302 vpL~~F~Ltp~S~eekv~NVsfAfeLm~D~G 332 (365)
T KOG3631|consen 302 VPLHHFYLTPNSFEEKVHNVSFAFELMKDGG 332 (365)
T ss_pred eecceeecCCCCHHHHHHHHHHHHHHHHccC
Confidence 7899999999999999999744334666663
No 10
>PRK00104 scpA segregation and condensation protein A; Reviewed
Probab=31.22 E-value=1.1e+02 Score=29.60 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=52.7
Q ss_pred chHHHHHHHHHHHHhhcCccccccccCCcchhHHHHHHHHHhhheecCeEEEEEcCC-CceeEee
Q 015540 229 DTDKNMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEH-GFHLVAP 292 (405)
Q Consensus 229 ~T~~~v~~i~~~L~k~~~v~lf~fVINP~SFsQTVENlFylSFLVKDGrv~I~~D~d-G~p~I~p 292 (405)
.....|..|...|+..+.++|.+++-+ .|-..-|=.+.++=-|+|.|.+.|..++. |..+|..
T Consensus 174 sv~~~~~~i~~~l~~~~~~~f~~l~~~-~~~~~~v~tFLAlLEL~k~~~i~l~Q~~~f~~I~i~~ 237 (242)
T PRK00104 174 KIEDRMLYILELLESKKRLSFSELFKE-PSKNEFVVTFLALLELIKLQEIIVEQEENFGEIYLEK 237 (242)
T ss_pred cHHHHHHHHHHHHhhCCcEeHHHHhCC-CCchhhHHHHHHHHHHHhcCeeEEEEcCCCCeEEEEe
Confidence 345678888999988888999999888 89999999999999999999999998774 6656643
No 11
>COG1354 scpA Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair]
Probab=29.70 E-value=1.2e+02 Score=29.47 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=49.5
Q ss_pred chHHHHHHHHHHHHhhcCccccccccCCcchhHHHHHHHHHhhheecCeEEEEEcCC-CceeEeeCC
Q 015540 229 DTDKNMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEH-GFHLVAPRN 294 (405)
Q Consensus 229 ~T~~~v~~i~~~L~k~~~v~lf~fVINP~SFsQTVENlFylSFLVKDGrv~I~~D~d-G~p~I~p~~ 294 (405)
.....+..++..|...+.++|+.++-...+=.+.|-..-++=||+|+|+|.|...+. |..+|....
T Consensus 174 ~~~e~~~~il~~l~~~~~~~~~~~~~~~~~~~~vv~~FlAlLeL~k~~~v~l~Qee~fgdI~i~~~~ 240 (248)
T COG1354 174 SVEEQLEELLARLEARGVLRFSDLFSPEERKDEVVSTFLALLELVKEGKVELEQEEPFGDIYIRLLG 240 (248)
T ss_pred cHHHHHHHHHHHHhhcCcccHHHhcccccchhHHHHHHHHHHHHHhcCceEEEecccccceEEEecC
Confidence 345677788888888777888887664445566666777788899999999998774 877887643
No 12
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=28.50 E-value=68 Score=27.99 Aligned_cols=41 Identities=29% Similarity=0.222 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhcCccccccccCCcchhHHHHHHHHHhhheecC
Q 015540 234 MTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDG 276 (405)
Q Consensus 234 v~~i~~~L~k~~~v~lf~fVINP~SFsQTVENlFylSFLVKDG 276 (405)
.+.|..+|.+. +|+-..++++|.|-. |+||+.++.-++++-
T Consensus 56 a~~~~~~l~~~-gvp~~~I~~e~~s~~-T~ena~~~~~~~~~~ 96 (155)
T PF02698_consen 56 AEAMRDYLIEL-GVPEERIILEPKSTN-TYENARFSKRLLKER 96 (155)
T ss_dssp HHHHHHHHHHT----GGGEEEE----S-HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhc-ccchheeEccCCCCC-HHHHHHHHHHHHHhh
Confidence 45566777776 899889999999885 999999998888765
No 13
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=26.58 E-value=46 Score=25.63 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcCccccccccCCcchhHHHHHHHHHhhheecCeEEEEEc
Q 015540 235 TTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVN 283 (405)
Q Consensus 235 ~~i~~~L~k~~~v~lf~fVINP~SFsQTVENlFylSFLVKDGrv~I~~D 283 (405)
..|.++|+.++.+++-++...=+.=.++||+| |.+||+-|+|.=...
T Consensus 3 ~~i~~~l~~~~~~S~~eLa~~~~~s~~~ve~m--L~~l~~kG~I~~~~~ 49 (69)
T PF09012_consen 3 QEIRDYLRERGRVSLAELAREFGISPEAVEAM--LEQLIRKGYIRKVDM 49 (69)
T ss_dssp HHHHHHHHHS-SEEHHHHHHHTT--HHHHHHH--HHHHHCCTSCEEEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHH--HHHHHHCCcEEEecC
Confidence 45778889899998888777766677899987 589999999985543
No 14
>PF12510 Smoothelin: Smoothelin cytoskeleton protein; InterPro: IPR022189 This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00307 from PFAM. Smoothelin is a cytoskeletal protein specifically expressed in differentiated smooth muscle cells and has been shown to co-localize with smooth muscle alpha actin.
Probab=26.48 E-value=64 Score=24.61 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 015540 54 DTVQRRVLRSKYLAVLSK 71 (405)
Q Consensus 54 ~~~eRR~LR~~YR~L~~~ 71 (405)
+-++||.||...|.|.++
T Consensus 36 dyeeRr~IRaaiR~lr~~ 53 (54)
T PF12510_consen 36 DYEERRRIRAAIRELRKK 53 (54)
T ss_pred cHHHHHHHHHHHHHHHhc
Confidence 457999999999998753
Done!