Query 015540
Match_columns 405
No_of_seqs 149 out of 262
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 14:23:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jvw_A Uncharacterized protein 43.5 25 0.00085 28.1 4.0 35 131-185 13-48 (88)
2 1u89_A Talin 1, talin; 4-helix 37.2 1.2E+02 0.0042 26.1 7.9 77 59-135 22-100 (139)
3 1wz3_A Autophagy 12B, ATG12B, 21.0 1.3E+02 0.0044 24.1 4.8 46 234-282 40-89 (96)
4 2sas_A Sarcoplasmic calcium-bi 19.1 2.5E+02 0.0085 22.6 6.5 63 129-193 118-185 (185)
5 2l7a_A Talin-1; vinculin, bund 17.8 3.1E+02 0.011 23.2 6.8 57 86-143 21-77 (131)
6 3ovk_A Aminopeptidase P, XAA-P 12.5 2.5E+02 0.0086 22.5 4.7 40 232-280 10-50 (132)
7 2be6_D Voltage-dependent L-typ 11.2 51 0.0018 22.2 -0.0 9 267-275 11-19 (37)
8 2guz_B Mitochondrial import in 9.5 3.9E+02 0.013 19.6 4.4 37 58-99 21-57 (65)
9 2f3y_B Voltage-dependent L-typ 9.1 52 0.0018 20.5 -0.6 9 267-275 2-10 (26)
10 1nh1_A Avirulence B protein; h 8.7 3.9E+02 0.013 25.8 5.0 60 58-119 184-253 (330)
No 1
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=43.46 E-value=25 Score=28.07 Aligned_cols=35 Identities=17% Similarity=0.459 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcccCCCCCCccccCCHHHHHhhhc-ccccCCCCC
Q 015540 131 EGVTPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAVS-PFLSACHGC 185 (405)
Q Consensus 131 ~g~d~~dFvskLl~~~g~~~~~~~~~d~dd~~~~~~~W~kLG~~a~-~~fr~~P~~ 185 (405)
.|++++..+..|+.+|| |..||.... .||+.-|++
T Consensus 13 HGvtLE~ilt~Lv~~YG--------------------W~~L~~~i~I~CF~~~PSi 48 (88)
T 2jvw_A 13 HGITLQKLLTELVEHYG--------------------WEELSYMVNINCFKKDPSI 48 (88)
T ss_dssp SSCCHHHHHHHHHHHTC--------------------HHHHHHHTTSSSTTSSCCH
T ss_pred cchhHHHHHHHHHHHhC--------------------HHHHHhhcccccCCCCCch
Confidence 49999999999998887 999999875 699988876
No 2
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1
Probab=37.22 E-value=1.2e+02 Score=26.05 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHh--HHhhcccCchHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHhhccCCCCCH
Q 015540 59 RVLRSKYLAVLSKIQDQ--RDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITSTLVTSVKSQSNEGVTP 135 (405)
Q Consensus 59 R~LR~~YR~L~~~i~~~--r~dl~~~~s~~l~e~L~ead~Lf~~Vk~prEa~lDAe~L~~la~~l~~s~k~~~~~g~d~ 135 (405)
+.|.+...+|++.++.- ...-..--.....+||.-.+.||...-.|.|.+-=++.|-.-+..|+.++|.-....-|+
T Consensus 22 ~~Vt~aL~dLL~hik~~~~~~~~~~~~~~~~d~Il~~t~~l~~s~gd~~eMvrqak~Laqat~~LV~~iK~eAe~~~D~ 100 (139)
T 1u89_A 22 TAVTQALNELLQHVKAHATGAGPAGRYDQATDTILTVTENIFSSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDL 100 (139)
T ss_dssp HHHHHHHHHHHHHHTTSSCCSSSCSCCHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHGGGCSCH
T ss_pred HHHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 45666777777777642 111111112446788999999999999999999999999767788888888644444444
No 3
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=20.96 E-value=1.3e+02 Score=24.10 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhcCc-cccccccC---CcchhHHHHHHHHHhhheecCeEEEEE
Q 015540 234 MTTMFEILRRKKSV-RLESLILN---RRSFAQTVENLFALSFLVKDGRVEIAV 282 (405)
Q Consensus 234 v~~i~~~L~k~~~v-~lf~fVIN---P~SFsQTVENlFylSFLVKDGrv~I~~ 282 (405)
+..+..+|+++-.+ .+|=||=| | |.++||.||+-. |=. ||.+-|..
T Consensus 40 ~~~~~~~lRkrL~l~alFlyvn~~~~P-s~d~~m~~LY~~-~kd-DGfLyi~Y 89 (96)
T 1wz3_A 40 FANVIDFLRRQLHSDSLFVYVNSAFSP-NPDESVIDLYNN-FGF-DGKLVVNY 89 (96)
T ss_dssp THHHHHHHHHHHTCSSCEEEEEEEECC-CTTSBHHHHHHH-HCB-TTBEEEEE
T ss_pred HHHHHHHHHHhcCCceEEEEECCcccC-ChhhHHHHHHHH-hCC-CCEEEEEE
Confidence 44455555553222 67767665 5 789999999764 333 77766654
No 4
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=19.14 E-value=2.5e+02 Score=22.61 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=32.8
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCCccc--CCCCCCccccCCHHHHHhhhccccc---CCCCCccccCCCC
Q 015540 129 SNEGVTPTDFVSCLLTMFGESNSNRLS--SQGNNNAQMSINWKDVGLAVSPFLS---ACHGCSTMLGPMK 193 (405)
Q Consensus 129 ~~~g~d~~dFvskLl~~~g~~~~~~~~--~d~dd~~~~~~~W~kLG~~a~~~fr---~~P~~~fLlGPL~ 193 (405)
....|+.++|...|. .+|........ ...|.+....++|..+-.....++. .+|+ ++++||++
T Consensus 118 ~dG~Is~~E~~~~l~-~~g~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~~~~~s~~~~~~-~~~~g~~~ 185 (185)
T 2sas_A 118 GDGIVDLEEFQNYCK-NFQLQCADVPAVYNVITDGGKVTFDLNRYKELYYRLLTSPAADAG-NTLMGQKP 185 (185)
T ss_dssp SSSCCCHHHHHHHTT-SSCCCCSSHHHHHHHHHTTTTSCCSHHHHHHHHHHHHHCSSCSGG-GGGGTCCC
T ss_pred CCCeEcHHHHHHHHH-HhCCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHhcCCCCCCc-ccccccCC
Confidence 345789999887652 33311000000 0001122346888887766655443 2455 57899984
No 5
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=17.83 E-value=3.1e+02 Score=23.21 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHH
Q 015540 86 KFNTILKEVQNLHRDVQKPREQVADAEALLDITSTLVTSVKSQSNEGVTPTDFVSCLL 143 (405)
Q Consensus 86 ~l~e~L~ead~Lf~~Vk~prEa~lDAe~L~~la~~l~~s~k~~~~~g~d~~dFvskLl 143 (405)
...+||.-.+.||.....|.+.+-=++.|-..++.++..+|.-....-|| +|..+|+
T Consensus 21 ~~~~il~~t~~l~~s~~~p~~Mv~~ak~iAr~a~~Li~~~K~eAd~seDp-~~~~rLl 77 (131)
T 2l7a_A 21 ATDTILTVTENIFSSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDL-ENSRKLL 77 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHH
Confidence 35678999999999999999999888888767777777776533223333 3444444
No 6
>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.00A {Streptococcus pyogenes}
Probab=12.46 E-value=2.5e+02 Score=22.47 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhcCccccccccCCcchhHHHHHHHHHh-hheecCeEEE
Q 015540 232 KNMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALS-FLVKDGRVEI 280 (405)
Q Consensus 232 ~~v~~i~~~L~k~~~v~lf~fVINP~SFsQTVENlFylS-FLVKDGrv~I 280 (405)
++++++.+.|++. +++ -++|... +|+||+| |---.|.+-+
T Consensus 10 ~Rl~~l~~~m~~~-~~d--a~li~~~------~n~~YltGf~~~~~~~vv 50 (132)
T 3ovk_A 10 QRLGHCLRQMAEK-GLE--ALLVTHL------TNSYYLTGFSGTAATVLI 50 (132)
T ss_dssp HHHHHHHHHHHHH-TCC--EEEECSH------HHHHHHHCCCCSCCEEEE
T ss_pred HHHHHHHHHHHHC-CCC--EEEEcCc------ccceeeeCccCCCEEEEE
Confidence 4556666666654 333 3344332 8999998 5444554444
No 7
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=11.20 E-value=51 Score=22.16 Aligned_cols=9 Identities=33% Similarity=0.866 Sum_probs=7.1
Q ss_pred HHHhhheec
Q 015540 267 FALSFLVKD 275 (405)
Q Consensus 267 FylSFLVKD 275 (405)
||..|||-|
T Consensus 11 fYatfLIQd 19 (37)
T 2be6_D 11 FYATFLIQE 19 (37)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 788888865
No 8
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=9.54 E-value=3.9e+02 Score=19.62 Aligned_cols=37 Identities=3% Similarity=0.033 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhcccCchHHHHHHHHHHHHHH
Q 015540 58 RRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHR 99 (405)
Q Consensus 58 RR~LR~~YR~L~~~i~~~r~dl~~~~s~~l~e~L~ead~Lf~ 99 (405)
...|++.||.|...-+-.+ ++|.-|...|++|.....
T Consensus 21 ~~~Ik~~yr~Lm~~nhPDk-----GGS~yl~~ki~~Ake~l~ 57 (65)
T 2guz_B 21 MDKINNRFNYLFEVNDKEK-----GGSFYLQSKVYRAAERLK 57 (65)
T ss_dssp HHHHHHHHHHHHHHTCGGG-----TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCC-----CCCHHHHHHHHHHHHHHH
Confidence 6789999999998877665 567777888888866553
No 9
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=9.10 E-value=52 Score=20.47 Aligned_cols=9 Identities=33% Similarity=0.866 Sum_probs=6.5
Q ss_pred HHHhhheec
Q 015540 267 FALSFLVKD 275 (405)
Q Consensus 267 FylSFLVKD 275 (405)
||..|||-|
T Consensus 2 fYat~LIqd 10 (26)
T 2f3y_B 2 FYATFLIQE 10 (26)
T ss_pred cchhhhHHH
Confidence 677777755
No 10
>1nh1_A Avirulence B protein; helix bundle, avirulence protein; 2.20A {Pseudomonas syringae} SCOP: e.45.1.1 PDB: 2nud_A 2nun_A*
Probab=8.73 E-value=3.9e+02 Score=25.76 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHH---------HHhHHhhcccC-chHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH
Q 015540 58 RRVLRSKYLAVLSKI---------QDQRDDLTRVD-SKKFNTILKEVQNLHRDVQKPREQVADAEALLDITS 119 (405)
Q Consensus 58 RR~LR~~YR~L~~~i---------~~~r~dl~~~~-s~~l~e~L~ead~Lf~~Vk~prEa~lDAe~L~~la~ 119 (405)
+..+|..|-.|.+.- .-..=.++.-+ ..-+-.|++-++.||..+-.+. +-|+++|..|++
T Consensus 184 ~~a~r~~y~~lR~~g~~~~~~~~m~~geP~~I~HT~AeyvP~I~~Hve~Ly~qA~d~s--ls~~~al~~lae 253 (330)
T 1nh1_A 184 TEYLRDRVAHLRTELGAKALKQHLQRYNPDRIDHTNASYLPIIKDHLNDLYRQAISSD--LSQAELISLIAR 253 (330)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHCSSEEECCCGGGHHHHHHHHHHHHHHHTCSS--CCHHHHHHHHHH
T ss_pred hhhhhhhhHHHhhhhhhhhHHHHHhccCCceeecccHHHHHHHHHHHHHHHHHhcCcc--hhhHHHHHHHHH
Confidence 566666666666653 22222233333 3568899999999998776553 457777766654
Done!