Query 015540
Match_columns 405
No_of_seqs 149 out of 262
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 14:24:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015540.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015540hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 25.4 87 0.0063 23.1 6.7 47 56-102 35-81 (110)
2 d1rr7a_ a.4.1.14 (A:) Middle o 14.9 1.3E+02 0.0098 21.8 5.5 39 112-150 4-42 (94)
3 d1ft9a2 b.82.3.1 (A:2-133) CO- 11.8 92 0.0067 23.1 3.8 58 271-328 44-105 (132)
4 d2zcwa2 b.82.3.2 (A:6-117) Tra 11.3 59 0.0043 23.5 2.4 20 271-290 24-44 (112)
5 d1m1ha1 b.114.1.1 (A:51-131) N 11.2 82 0.006 22.3 2.9 22 269-290 34-55 (81)
6 d2a7wa1 a.204.1.4 (A:4-94) Pho 11.2 2.7E+02 0.02 20.1 6.3 35 113-147 57-91 (91)
7 d2scpa_ a.39.1.5 (A:) Sarcopla 10.9 96 0.007 23.5 3.7 63 129-192 107-173 (174)
8 d1r5la2 c.13.1.1 (A:91-275) Al 10.1 1.3E+02 0.0094 23.6 4.4 52 230-282 82-134 (185)
9 d2f1ka1 a.100.1.12 (A:166-279) 9.7 2.6E+02 0.019 20.6 5.9 42 58-99 69-110 (114)
10 d1pfta_ g.41.3.1 (A:) Transcri 8.9 56 0.0041 21.4 1.2 21 366-387 24-44 (50)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=25.41 E-value=87 Score=23.13 Aligned_cols=47 Identities=6% Similarity=0.164 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhcccCchHHHHHHHHHHHHHHhcc
Q 015540 56 VQRRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQ 102 (405)
Q Consensus 56 ~eRR~LR~~YR~L~~~i~~~r~dl~~~~s~~l~e~L~ead~Lf~~Vk 102 (405)
.+||.+...+..|..+-+.--.++.+....+..+++.++..|-+.++
T Consensus 35 ~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~ 81 (110)
T d1seta1 35 REVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAK 81 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 56777777777777666665566655544555566666666655554
No 2
>d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage Mu [TaxId: 10677]}
Probab=14.85 E-value=1.3e+02 Score=21.83 Aligned_cols=39 Identities=10% Similarity=0.188 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhcCCC
Q 015540 112 EALLDITSTLVTSVKSQSNEGVTPTDFVSCLLTMFGESN 150 (405)
Q Consensus 112 e~L~~la~~l~~s~k~~~~~g~d~~dFvskLl~~~g~~~ 150 (405)
++|.+|+..+...+...+.......+++.+|..+||+..
T Consensus 4 e~L~dl~~~~~~~l~~~~~~~~~a~~l~~~l~~~~gG~~ 42 (94)
T d1rr7a_ 4 ALLAELNDLLRGELSRLGVDPAHSLEIVVAICKHLGGGQ 42 (94)
T ss_dssp HHHHHHHHHHHHHHHHTSSCTTSHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHCCee
Confidence 456667766555555555455567888999999998643
No 3
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=11.76 E-value=92 Score=23.05 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=32.6
Q ss_pred hheecCeEEEEEcCCCceeEeeCCCCCcc-cccc---CCCcceeEEEEecHHHHHHHHHHcC
Q 015540 271 FLVKDGRVEIAVNEHGFHLVAPRNAPSAD-SVMS---GQVKYSHFVFRYDFKDWKLMKDVVP 328 (405)
Q Consensus 271 FLVKDGrv~I~~D~dG~p~I~p~~~p~~~-~~~s---~~~~~~Q~I~sLd~~~Wk~lie~~~ 328 (405)
|+|..|.++++...+|..++-..-.|..- ...+ =.....=-|+.++.+.|..+++.+.
T Consensus 44 y~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~~~~~~v~A~~~s~v~~i~~~~~~~ll~~~p 105 (132)
T d1ft9a2 44 FVVVDGRLRVYLVGEEREISLFYLTSGDMFCMHSGCLVEATERTEVRFADIRTFEQKLQTCP 105 (132)
T ss_dssp EEEEESEEEEEEEETTEEEEEEEEETTCEEESCSSCEEEESSCEEEEEECHHHHHHHHHHCG
T ss_pred EEEEeCeEeeeccccccceeeccccccccccccccccceeccceeeeeehHHHHHHHHHHHH
Confidence 78899999998765553332211111000 0000 0011224588999999999998764
No 4
>d2zcwa2 b.82.3.2 (A:6-117) Transcriptional regulator TTHA1359, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=11.25 E-value=59 Score=23.54 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=15.4
Q ss_pred hheecCeEEEEE-cCCCceeE
Q 015540 271 FLVKDGRVEIAV-NEHGFHLV 290 (405)
Q Consensus 271 FLVKDGrv~I~~-D~dG~p~I 290 (405)
|+|..|+|+|.. +++|...+
T Consensus 24 y~i~~G~v~i~~~~~~G~e~~ 44 (112)
T d2zcwa2 24 YRVLEGLVRLEAVDEEGNALT 44 (112)
T ss_dssp EEEEESCEEEEEECTTSCEEE
T ss_pred EEEEEccceEEEeecccccce
Confidence 789999999985 56775543
No 5
>d1m1ha1 b.114.1.1 (A:51-131) N-utilization substance G protein NusG, insert domain {Aquifex aeolicus [TaxId: 63363]}
Probab=11.23 E-value=82 Score=22.31 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=16.6
Q ss_pred HhhheecCeEEEEEcCCCceeE
Q 015540 269 LSFLVKDGRVEIAVNEHGFHLV 290 (405)
Q Consensus 269 lSFLVKDGrv~I~~D~dG~p~I 290 (405)
+-|||-||.|.+....+|.-+|
T Consensus 34 t~f~iedg~vrvlesvegd~cv 55 (81)
T d1m1ha1 34 TTFRIENGEVKVVESVEGDTCV 55 (81)
T ss_dssp EEEEECSSCEEEEECSTTCGGG
T ss_pred EEEEEcCCeEEEEecccCCccc
Confidence 3589999999998766665444
No 6
>d2a7wa1 a.204.1.4 (A:4-94) Phosphoribosyl-ATP pyrophosphatase HisE {Chromobacterium violaceum [TaxId: 536]}
Probab=11.22 E-value=2.7e+02 Score=20.08 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhc
Q 015540 113 ALLDITSTLVTSVKSQSNEGVTPTDFVSCLLTMFG 147 (405)
Q Consensus 113 ~L~~la~~l~~s~k~~~~~g~d~~dFvskLl~~~g 147 (405)
+....|..+...+-.+...|+++++...-|.+++|
T Consensus 57 vi~EaADLlyHllVlL~~~gi~~~dV~~eL~~R~G 91 (91)
T d2a7wa1 57 LVREVADLWFHTMVLLTYHGLRPEDVVMELHRREG 91 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCC
Confidence 34445554444444456779999999988877765
No 7
>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]}
Probab=10.88 E-value=96 Score=23.55 Aligned_cols=63 Identities=13% Similarity=0.227 Sum_probs=28.3
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCCccc--CCCCCCccccCCHHHHHhhhcccccC--CCCCccccCCC
Q 015540 129 SNEGVTPTDFVSCLLTMFGESNSNRLS--SQGNNNAQMSINWKDVGLAVSPFLSA--CHGCSTMLGPM 192 (405)
Q Consensus 129 ~~~g~d~~dFvskLl~~~g~~~~~~~~--~d~dd~~~~~~~W~kLG~~a~~~fr~--~P~~~fLlGPL 192 (405)
+...|+.++|...| +.++........ ..-|.+....++|..+-.....+|.. -+.-..++|||
T Consensus 107 ~dG~Is~~E~~~~l-~~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~f~~~~~~~~~~~~~g~~ 173 (174)
T d2scpa_ 107 EDNNISRDEYGIFF-GMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGSDFFMNDGDSTNKVFWGPL 173 (174)
T ss_dssp CSSSEEHHHHHHHH-HHTTCCGGGHHHHHHHHCTTCSSEECHHHHHHHHHHHHHCSSCCGGGGTTSSC
T ss_pred ccccCCHHHHHHHH-HHHhhhhHHHHHHHhhcCCCCCCcEeHHHHHHHHHHHhhcCCccccccCcCCC
Confidence 34567777776543 344422110000 00011223456666655544333332 22235789997
No 8
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.11 E-value=1.3e+02 Score=23.61 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHhhcCccccc-cccCCcchhHHHHHHHHHhhheecCeEEEEE
Q 015540 230 TDKNMTTMFEILRRKKSVRLES-LILNRRSFAQTVENLFALSFLVKDGRVEIAV 282 (405)
Q Consensus 230 T~~~v~~i~~~L~k~~~v~lf~-fVINP~SFsQTVENlFylSFLVKDGrv~I~~ 282 (405)
+...++.+.++++...|..+.. +||||-+|..++=|+| -+||=..=+-+|.+
T Consensus 82 ~~~~~~~~~~~~q~~yP~rl~~i~ivn~P~~~~~~~~~v-k~fl~~k~~~Ki~~ 134 (185)
T d1r5la2 82 TPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMI-KPFLTEKIKERIHM 134 (185)
T ss_dssp CHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHH-GGGSCHHHHTTEEE
T ss_pred cHHHHHHHHHHHHhhCchhhheeEEEcCCHHHHHHHHHH-HHhccHHHHhheEE
Confidence 3456778888898888887775 7899999999999988 67775544444443
No 9
>d2f1ka1 a.100.1.12 (A:166-279) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=9.69 E-value=2.6e+02 Score=20.55 Aligned_cols=42 Identities=7% Similarity=0.099 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhcccCchHHHHHHHHHHHHHH
Q 015540 58 RRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHR 99 (405)
Q Consensus 58 RR~LR~~YR~L~~~i~~~r~dl~~~~s~~l~e~L~ead~Lf~ 99 (405)
+..|......+++.+.+-++.+...+...|.+.|++++.+-+
T Consensus 69 ~~~i~~~l~~~~~~L~~l~~~l~~~d~~~l~~~l~~a~~~R~ 110 (114)
T d2f1ka1 69 QRALLKSLQDYRQHLDQLITLISNQQWPELHRLLQQTNGDRD 110 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 445555666666666666666655556667777777766543
No 10
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=8.86 E-value=56 Score=21.41 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=14.2
Q ss_pred hhhcccccceeeecccccCCCc
Q 015540 366 RKLSRNRGLVIREESVVEDSPE 387 (405)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~ 387 (405)
--.|.+.|+|+.|.. ....||
T Consensus 24 e~vC~~CG~Viee~~-iD~gpE 44 (50)
T d1pfta_ 24 EIVCAKCGYVIEENI-IDMGPE 44 (50)
T ss_dssp EEEESSSCCBCCCCC-CCCCSS
T ss_pred eEecccCCcEecccc-ccCCCc
Confidence 357899999987763 344443
Done!