Query 015541
Match_columns 405
No_of_seqs 353 out of 2467
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:16:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015541.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015541hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1684 Enoyl-CoA hydratase [L 100.0 2.4E-74 5.1E-79 550.1 27.0 331 65-405 37-393 (401)
2 PLN02851 3-hydroxyisobutyryl-C 100.0 1.5E-68 3.2E-73 536.8 33.1 330 64-405 40-398 (407)
3 PLN02157 3-hydroxyisobutyryl-C 100.0 3.5E-68 7.6E-73 534.3 30.2 329 65-405 36-393 (401)
4 PLN02988 3-hydroxyisobutyryl-C 100.0 5.2E-68 1.1E-72 531.2 30.4 328 66-405 9-367 (381)
5 PLN02874 3-hydroxyisobutyryl-C 100.0 2.2E-59 4.8E-64 470.4 33.0 328 63-405 8-364 (379)
6 PRK05617 3-hydroxyisobutyryl-C 100.0 4.5E-58 9.8E-63 455.6 28.3 314 67-395 4-342 (342)
7 PRK05980 enoyl-CoA hydratase; 100.0 9.6E-50 2.1E-54 382.7 24.2 252 67-323 4-257 (260)
8 KOG1680 Enoyl-CoA hydratase [L 100.0 1.8E-50 4E-55 375.8 18.0 253 64-335 34-289 (290)
9 PRK06127 enoyl-CoA hydratase; 100.0 1.7E-49 3.8E-54 382.6 23.8 253 64-323 9-263 (269)
10 PRK06143 enoyl-CoA hydratase; 100.0 3E-49 6.6E-54 378.3 25.0 249 65-322 5-255 (256)
11 PRK07657 enoyl-CoA hydratase; 100.0 3.3E-49 7.1E-54 379.0 23.3 249 66-323 3-254 (260)
12 PRK09076 enoyl-CoA hydratase; 100.0 5.4E-49 1.2E-53 377.1 24.2 246 68-323 5-252 (258)
13 PRK05809 3-hydroxybutyryl-CoA 100.0 4.4E-49 9.5E-54 378.1 23.1 251 64-323 2-254 (260)
14 PRK05862 enoyl-CoA hydratase; 100.0 5.7E-49 1.2E-53 376.7 23.6 247 65-323 3-251 (257)
15 PLN02600 enoyl-CoA hydratase 100.0 4.9E-49 1.1E-53 375.8 22.4 242 74-323 2-245 (251)
16 TIGR03210 badI 2-ketocyclohexa 100.0 6.8E-49 1.5E-53 375.9 23.3 246 66-323 2-250 (256)
17 PRK06142 enoyl-CoA hydratase; 100.0 1.2E-48 2.7E-53 377.4 22.9 253 65-323 5-267 (272)
18 PRK08138 enoyl-CoA hydratase; 100.0 2.1E-48 4.4E-53 373.6 23.9 248 64-323 5-255 (261)
19 PRK08150 enoyl-CoA hydratase; 100.0 2.4E-48 5.2E-53 371.9 23.9 246 66-323 2-249 (255)
20 PRK06494 enoyl-CoA hydratase; 100.0 2.3E-48 5E-53 372.9 23.8 247 65-323 3-253 (259)
21 PRK07468 enoyl-CoA hydratase; 100.0 2.4E-48 5.3E-53 373.3 23.5 252 65-323 3-256 (262)
22 PRK06144 enoyl-CoA hydratase; 100.0 3E-48 6.5E-53 372.7 24.0 247 65-323 7-256 (262)
23 PRK08139 enoyl-CoA hydratase; 100.0 3.1E-48 6.8E-53 373.3 24.2 251 63-323 8-260 (266)
24 PRK09674 enoyl-CoA hydratase-i 100.0 2.5E-48 5.4E-53 371.8 23.2 244 68-323 4-249 (255)
25 PRK05995 enoyl-CoA hydratase; 100.0 3.3E-48 7.2E-53 372.4 23.9 251 65-323 3-256 (262)
26 PRK09120 p-hydroxycinnamoyl Co 100.0 3.8E-48 8.2E-53 374.4 24.1 253 65-323 7-264 (275)
27 PRK07327 enoyl-CoA hydratase; 100.0 3E-48 6.6E-53 373.8 23.1 251 64-323 9-262 (268)
28 TIGR01929 menB naphthoate synt 100.0 3E-48 6.5E-53 372.1 23.0 249 67-323 3-253 (259)
29 PRK05674 gamma-carboxygeranoyl 100.0 3.4E-48 7.4E-53 372.8 23.4 252 65-323 4-258 (265)
30 COG1024 CaiD Enoyl-CoA hydrata 100.0 3.1E-48 6.8E-53 371.6 22.9 247 65-323 4-254 (257)
31 PRK07799 enoyl-CoA hydratase; 100.0 5.8E-48 1.3E-52 370.9 24.3 251 65-323 4-257 (263)
32 PRK08140 enoyl-CoA hydratase; 100.0 4.7E-48 1E-52 371.4 23.6 251 65-323 3-256 (262)
33 PRK06563 enoyl-CoA hydratase; 100.0 2.9E-48 6.3E-53 371.4 21.9 244 69-323 2-249 (255)
34 PRK09245 enoyl-CoA hydratase; 100.0 4.4E-48 9.5E-53 372.4 23.0 252 67-323 4-260 (266)
35 TIGR02280 PaaB1 phenylacetate 100.0 4.6E-48 1E-52 370.2 22.9 247 69-323 2-250 (256)
36 PRK11423 methylmalonyl-CoA dec 100.0 5.6E-48 1.2E-52 370.5 23.4 250 64-323 2-255 (261)
37 PRK07260 enoyl-CoA hydratase; 100.0 7.8E-48 1.7E-52 368.4 24.0 251 66-322 2-254 (255)
38 PRK07658 enoyl-CoA hydratase; 100.0 5.7E-48 1.2E-52 369.8 22.9 247 67-323 3-251 (257)
39 PRK07511 enoyl-CoA hydratase; 100.0 9.2E-48 2E-52 368.9 24.0 249 68-323 5-255 (260)
40 PRK08252 enoyl-CoA hydratase; 100.0 8.3E-48 1.8E-52 368.0 23.5 244 66-323 3-248 (254)
41 PRK08258 enoyl-CoA hydratase; 100.0 1.4E-47 3E-52 370.9 24.6 252 66-323 17-271 (277)
42 PLN02664 enoyl-CoA hydratase/d 100.0 1E-47 2.2E-52 371.5 23.3 247 73-323 14-269 (275)
43 PRK03580 carnitinyl-CoA dehydr 100.0 1.4E-47 3E-52 367.9 23.6 246 67-323 4-255 (261)
44 PRK05981 enoyl-CoA hydratase; 100.0 1.2E-47 2.6E-52 369.3 23.1 255 64-323 2-260 (266)
45 PRK08260 enoyl-CoA hydratase; 100.0 1.4E-47 3.1E-52 374.1 23.8 255 65-323 3-272 (296)
46 PRK07659 enoyl-CoA hydratase; 100.0 2.1E-47 4.5E-52 366.5 22.3 246 66-323 6-254 (260)
47 PRK07396 dihydroxynaphthoic ac 100.0 2.6E-47 5.6E-52 368.2 23.0 250 65-323 12-263 (273)
48 PRK06210 enoyl-CoA hydratase; 100.0 1.9E-47 4E-52 369.1 21.7 255 64-323 3-266 (272)
49 PRK06023 enoyl-CoA hydratase; 100.0 3.4E-47 7.4E-52 363.2 22.9 243 67-321 4-251 (251)
50 PLN02888 enoyl-CoA hydratase 100.0 6.5E-47 1.4E-51 363.9 24.8 250 63-324 6-259 (265)
51 PRK05864 enoyl-CoA hydratase; 100.0 2.3E-47 5E-52 369.2 21.8 255 65-323 8-269 (276)
52 PRK05870 enoyl-CoA hydratase; 100.0 3.4E-47 7.3E-52 362.8 22.1 244 67-321 4-249 (249)
53 PRK06688 enoyl-CoA hydratase; 100.0 6.6E-47 1.4E-51 362.8 22.6 246 66-323 5-253 (259)
54 PLN02921 naphthoate synthase 100.0 9E-47 1.9E-51 371.8 24.0 252 64-323 63-317 (327)
55 PRK07509 enoyl-CoA hydratase; 100.0 8.4E-47 1.8E-51 362.6 22.5 250 65-323 2-257 (262)
56 PRK08259 enoyl-CoA hydratase; 100.0 1.7E-46 3.7E-51 358.9 23.1 245 66-323 3-249 (254)
57 PLN03214 probable enoyl-CoA hy 100.0 2.2E-46 4.8E-51 362.4 23.7 253 64-323 9-265 (278)
58 PRK06190 enoyl-CoA hydratase; 100.0 3.8E-46 8.3E-51 357.0 25.0 233 64-308 2-236 (258)
59 PRK06495 enoyl-CoA hydratase; 100.0 2E-46 4.4E-51 359.1 22.8 247 65-323 3-251 (257)
60 PRK07938 enoyl-CoA hydratase; 100.0 5.1E-46 1.1E-50 354.6 23.2 243 68-323 3-248 (249)
61 PRK07854 enoyl-CoA hydratase; 100.0 4.1E-46 8.9E-51 354.0 21.3 236 68-323 2-237 (243)
62 PRK06072 enoyl-CoA hydratase; 100.0 7.4E-46 1.6E-50 353.4 23.1 239 68-323 2-242 (248)
63 PRK07827 enoyl-CoA hydratase; 100.0 7E-46 1.5E-50 355.9 23.0 248 65-323 5-255 (260)
64 PF00378 ECH: Enoyl-CoA hydrat 100.0 8.6E-47 1.9E-51 359.0 15.8 242 70-321 2-245 (245)
65 PRK07110 polyketide biosynthes 100.0 1.4E-45 3E-50 351.7 23.9 238 65-316 4-244 (249)
66 TIGR03189 dienoyl_CoA_hyt cycl 100.0 1.3E-45 2.7E-50 352.3 23.0 239 68-323 3-245 (251)
67 PRK08321 naphthoate synthase; 100.0 1.4E-45 2.9E-50 360.9 23.0 255 65-323 22-292 (302)
68 PRK12478 enoyl-CoA hydratase; 100.0 1.2E-45 2.6E-50 360.5 21.5 256 65-335 4-280 (298)
69 PRK05869 enoyl-CoA hydratase; 100.0 2.6E-45 5.6E-50 343.9 21.0 208 65-282 2-213 (222)
70 PRK07112 polyketide biosynthes 100.0 1.2E-44 2.6E-49 346.4 23.0 245 65-323 3-249 (255)
71 PRK08788 enoyl-CoA hydratase; 100.0 2E-43 4.3E-48 342.2 25.1 238 65-307 14-261 (287)
72 PRK08290 enoyl-CoA hydratase; 100.0 2.3E-43 5E-48 342.9 20.7 214 64-284 2-235 (288)
73 KOG1679 Enoyl-CoA hydratase [L 100.0 8.2E-44 1.8E-48 318.6 14.4 248 66-323 27-285 (291)
74 TIGR03200 dearomat_oah 6-oxocy 100.0 1.6E-42 3.5E-47 339.7 23.2 188 77-268 38-237 (360)
75 TIGR03222 benzo_boxC benzoyl-C 100.0 7.4E-43 1.6E-47 362.5 21.1 250 65-323 255-538 (546)
76 PRK11730 fadB multifunctional 100.0 1.8E-42 3.9E-47 373.3 23.7 251 67-323 7-298 (715)
77 PRK08272 enoyl-CoA hydratase; 100.0 1.6E-42 3.4E-47 339.5 20.6 213 65-284 9-243 (302)
78 PRK08184 benzoyl-CoA-dihydrodi 100.0 9.3E-43 2E-47 362.8 20.1 251 65-323 259-542 (550)
79 PRK06213 enoyl-CoA hydratase; 100.0 1.8E-41 4E-46 319.5 20.7 205 66-283 3-210 (229)
80 PRK11154 fadJ multifunctional 100.0 4.8E-41 1E-45 362.2 25.0 248 68-322 7-294 (708)
81 PLN02267 enoyl-CoA hydratase/i 100.0 7.2E-41 1.6E-45 317.2 17.3 196 68-271 2-201 (239)
82 TIGR02437 FadB fatty oxidation 100.0 3.1E-40 6.7E-45 355.4 24.1 197 67-268 7-203 (714)
83 TIGR02440 FadJ fatty oxidation 100.0 1.2E-39 2.5E-44 350.8 24.4 243 70-320 4-287 (699)
84 cd06558 crotonase-like Crotona 100.0 1.3E-39 2.8E-44 298.5 18.7 193 69-268 2-194 (195)
85 TIGR02441 fa_ox_alpha_mit fatt 100.0 2.8E-39 6E-44 348.8 20.8 191 57-255 4-198 (737)
86 KOG1681 Enoyl-CoA isomerase [L 100.0 1.6E-39 3.4E-44 293.6 14.0 209 65-275 18-236 (292)
87 COG0447 MenB Dihydroxynaphthoi 100.0 4.6E-39 1E-43 288.5 14.2 254 64-323 16-272 (282)
88 TIGR03222 benzo_boxC benzoyl-C 100.0 1.6E-38 3.5E-43 330.1 20.5 207 63-274 8-231 (546)
89 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.1E-37 2.4E-42 324.9 21.5 205 63-272 12-233 (550)
90 KOG0016 Enoyl-CoA hydratase/is 100.0 9.7E-36 2.1E-40 274.9 18.0 251 65-321 6-262 (266)
91 KOG1682 Enoyl-CoA isomerase [L 100.0 3.9E-35 8.3E-40 260.9 16.8 240 74-323 39-281 (287)
92 cd07014 S49_SppA Signal peptid 99.8 6.4E-19 1.4E-23 159.7 9.6 140 95-258 23-172 (177)
93 cd07020 Clp_protease_NfeD_1 No 99.7 6.4E-18 1.4E-22 154.5 11.3 146 78-256 2-166 (187)
94 PF13766 ECH_C: 2-enoyl-CoA Hy 99.7 1.6E-18 3.4E-23 146.6 3.5 92 295-394 2-118 (118)
95 cd07019 S49_SppA_1 Signal pept 99.6 1E-15 2.3E-20 142.5 9.1 101 77-199 2-104 (211)
96 TIGR00705 SppA_67K signal pept 99.5 9.6E-14 2.1E-18 147.1 10.2 154 74-253 307-509 (584)
97 cd07022 S49_Sppa_36K_type Sign 99.5 4.4E-13 9.6E-18 125.1 12.8 96 83-201 13-109 (214)
98 cd00394 Clp_protease_like Case 99.5 4.6E-13 9.9E-18 119.2 11.0 135 91-252 8-161 (161)
99 cd07016 S14_ClpP_1 Caseinolyti 99.4 1.1E-12 2.4E-17 116.8 8.9 130 94-252 15-160 (160)
100 cd07023 S49_Sppa_N_C Signal pe 99.4 3.6E-12 7.8E-17 118.4 11.1 87 92-200 15-101 (208)
101 TIGR00706 SppA_dom signal pept 99.3 1.6E-11 3.5E-16 114.0 12.3 136 96-259 15-199 (207)
102 cd07018 S49_SppA_67K_type Sign 99.1 2E-10 4.4E-15 107.8 10.3 90 90-202 25-114 (222)
103 cd07021 Clp_protease_NfeD_like 99.1 9.6E-10 2.1E-14 99.7 12.3 135 90-255 9-171 (178)
104 KOG1683 Hydroxyacyl-CoA dehydr 98.6 7.4E-08 1.6E-12 94.5 7.9 171 75-255 65-240 (380)
105 cd07015 Clp_protease_NfeD Nodu 98.4 2.7E-06 6E-11 76.6 12.2 139 90-255 9-165 (172)
106 cd07013 S14_ClpP Caseinolytic 98.4 1E-06 2.2E-11 78.7 8.7 136 91-252 9-162 (162)
107 PRK10949 protease 4; Provision 98.4 5.8E-06 1.3E-10 88.4 15.0 163 74-264 325-538 (618)
108 PRK00277 clpP ATP-dependent Cl 98.3 5.3E-06 1.2E-10 76.7 10.5 134 89-255 38-196 (200)
109 PRK12319 acetyl-CoA carboxylas 98.2 0.00016 3.4E-09 69.3 18.0 140 88-256 76-215 (256)
110 CHL00198 accA acetyl-CoA carbo 98.1 0.00018 4E-09 70.6 17.8 139 88-255 132-270 (322)
111 TIGR00513 accA acetyl-CoA carb 98.1 0.00029 6.2E-09 69.2 18.9 139 88-255 129-267 (316)
112 PLN03230 acetyl-coenzyme A car 98.0 0.00043 9.3E-09 69.8 18.9 138 89-255 200-337 (431)
113 cd07017 S14_ClpP_2 Caseinolyti 98.0 2.7E-05 5.8E-10 70.2 9.3 134 91-252 18-171 (171)
114 PRK12553 ATP-dependent Clp pro 98.0 6.9E-05 1.5E-09 69.7 12.0 137 89-255 42-202 (207)
115 PRK05724 acetyl-CoA carboxylas 98.0 0.00054 1.2E-08 67.3 17.7 139 88-255 129-267 (319)
116 PLN03229 acetyl-coenzyme A car 97.9 0.0008 1.7E-08 72.0 18.6 139 88-255 220-358 (762)
117 PRK14512 ATP-dependent Clp pro 97.8 0.00024 5.1E-09 65.6 12.1 138 90-255 31-188 (197)
118 COG0616 SppA Periplasmic serin 97.8 0.00018 3.9E-09 71.2 11.5 81 96-199 82-162 (317)
119 PRK11778 putative inner membra 97.8 0.00015 3.3E-09 71.6 10.4 158 74-258 89-289 (330)
120 TIGR03133 malonate_beta malona 97.7 0.0013 2.8E-08 63.5 15.4 152 76-256 60-218 (274)
121 PF00574 CLP_protease: Clp pro 97.7 9.4E-05 2E-09 67.1 6.9 137 91-255 25-181 (182)
122 TIGR00493 clpP ATP-dependent C 97.7 0.00053 1.1E-08 63.0 11.8 140 89-254 33-190 (191)
123 CHL00028 clpP ATP-dependent Cl 97.7 0.00069 1.5E-08 62.6 12.0 139 89-256 37-197 (200)
124 PRK07189 malonate decarboxylas 97.4 0.0017 3.6E-08 63.5 11.5 108 76-200 69-182 (301)
125 PRK14514 ATP-dependent Clp pro 97.4 0.0019 4.1E-08 60.5 11.2 138 89-255 61-219 (221)
126 PF01972 SDH_sah: Serine dehyd 97.3 0.0012 2.6E-08 63.1 9.4 94 89-210 70-163 (285)
127 PRK12551 ATP-dependent Clp pro 97.3 0.0035 7.5E-08 57.8 11.6 139 90-256 33-191 (196)
128 PRK14513 ATP-dependent Clp pro 97.2 0.0034 7.4E-08 58.0 11.2 139 89-257 34-194 (201)
129 TIGR00705 SppA_67K signal pept 97.2 0.0018 3.9E-08 69.3 10.4 85 94-200 76-160 (584)
130 TIGR00515 accD acetyl-CoA carb 97.2 0.012 2.6E-07 57.3 14.6 155 77-267 122-277 (285)
131 TIGR03134 malonate_gamma malon 97.1 0.022 4.8E-07 54.0 15.6 163 75-266 31-200 (238)
132 PRK05654 acetyl-CoA carboxylas 97.1 0.012 2.5E-07 57.6 13.6 158 74-267 119-278 (292)
133 PF01343 Peptidase_S49: Peptid 97.0 0.00035 7.6E-09 61.8 2.4 96 161-259 2-144 (154)
134 CHL00174 accD acetyl-CoA carbo 96.7 0.032 7E-07 54.4 13.4 155 77-267 135-291 (296)
135 TIGR01117 mmdA methylmalonyl-C 96.6 0.06 1.3E-06 56.8 15.0 159 80-264 319-490 (512)
136 COG1030 NfeD Membrane-bound se 96.5 0.037 7.9E-07 56.4 12.2 149 74-254 25-187 (436)
137 COG0740 ClpP Protease subunit 96.4 0.021 4.5E-07 52.5 9.3 98 157-257 77-194 (200)
138 PRK12552 ATP-dependent Clp pro 96.3 0.045 9.7E-07 51.3 10.9 140 90-255 48-214 (222)
139 TIGR01117 mmdA methylmalonyl-C 96.0 0.091 2E-06 55.5 12.8 143 77-256 84-229 (512)
140 PLN02820 3-methylcrotonyl-CoA 95.7 0.16 3.5E-06 54.1 13.3 110 77-200 131-241 (569)
141 COG0825 AccA Acetyl-CoA carbox 95.3 0.056 1.2E-06 52.1 7.3 88 156-255 179-266 (317)
142 PF01039 Carboxyl_trans: Carbo 95.3 0.13 2.8E-06 54.1 10.7 140 77-256 59-206 (493)
143 PRK10949 protease 4; Provision 95.1 0.12 2.6E-06 55.8 9.7 85 94-200 95-179 (618)
144 COG0777 AccD Acetyl-CoA carbox 95.0 0.39 8.4E-06 46.1 11.9 154 77-266 124-278 (294)
145 COG4799 Acetyl-CoA carboxylase 92.4 0.62 1.3E-05 48.9 8.8 102 77-196 93-194 (526)
146 PF01039 Carboxyl_trans: Carbo 89.4 1.1 2.3E-05 47.3 7.5 162 75-262 293-471 (493)
147 PLN02820 3-methylcrotonyl-CoA 89.2 8.8 0.00019 41.2 14.1 145 89-258 380-543 (569)
148 PF02601 Exonuc_VII_L: Exonucl 80.4 3.1 6.8E-05 41.0 5.5 78 94-196 55-136 (319)
149 TIGR00237 xseA exodeoxyribonuc 79.8 3.3 7.1E-05 42.9 5.6 77 94-195 170-247 (432)
150 KOG0840 ATP-dependent Clp prot 77.5 9.8 0.00021 36.3 7.4 135 90-255 100-257 (275)
151 COG0074 SucD Succinyl-CoA synt 71.4 13 0.00028 36.1 6.7 21 100-120 189-209 (293)
152 PTZ00187 succinyl-CoA syntheta 71.3 8 0.00017 38.4 5.5 53 99-177 212-264 (317)
153 PRK00286 xseA exodeoxyribonucl 71.0 6.3 0.00014 40.7 5.0 77 94-196 176-253 (438)
154 COG1570 XseA Exonuclease VII, 69.2 9.4 0.0002 39.4 5.6 77 94-195 176-253 (440)
155 KOG0540 3-Methylcrotonyl-CoA c 67.1 36 0.00078 35.2 9.1 150 80-259 353-511 (536)
156 PLN02522 ATP citrate (pro-S)-l 65.4 15 0.00034 39.6 6.6 50 99-177 210-262 (608)
157 COG4799 Acetyl-CoA carboxylase 62.6 63 0.0014 34.3 10.3 117 77-214 326-443 (526)
158 PF13607 Succ_CoA_lig: Succiny 61.5 24 0.00051 30.6 5.9 52 98-176 41-92 (138)
159 PF09905 DUF2132: Uncharacteri 46.2 24 0.00052 26.3 2.8 30 303-341 33-62 (64)
160 PF00549 Ligase_CoA: CoA-ligas 39.8 76 0.0016 28.0 5.7 25 98-122 60-84 (153)
161 KOG4717 Serine/threonine prote 37.2 1.4E+02 0.003 32.0 7.8 210 128-351 101-360 (864)
162 smart00250 PLEC Plectin repeat 36.3 28 0.00061 22.8 1.8 19 232-251 17-35 (38)
163 COG0793 Prc Periplasmic protea 35.3 40 0.00087 34.6 3.7 91 77-180 205-302 (406)
164 KOG1255 Succinyl-CoA synthetas 33.9 93 0.002 29.7 5.4 74 77-180 204-277 (329)
165 TIGR02717 AcCoA-syn-alpha acet 33.1 1.2E+02 0.0026 31.5 6.9 53 98-177 190-242 (447)
166 TIGR01019 sucCoAalpha succinyl 31.9 84 0.0018 30.7 5.1 14 164-177 224-237 (286)
167 PRK05678 succinyl-CoA syntheta 30.7 1.1E+02 0.0023 30.0 5.7 14 164-177 226-239 (291)
168 PF03464 eRF1_2: eRF1 domain 2 27.6 99 0.0021 26.2 4.3 45 77-121 25-83 (133)
169 KOG0610 Putative serine/threon 27.0 68 0.0015 33.0 3.6 65 125-189 158-231 (459)
170 PRK05617 3-hydroxyisobutyryl-C 27.0 23 0.0005 35.4 0.3 70 262-339 256-329 (342)
171 PRK04342 DNA topoisomerase VI 26.2 70 0.0015 32.4 3.6 42 164-209 240-287 (367)
172 PRK06091 membrane protein FdrA 25.3 1.5E+02 0.0032 31.8 5.9 22 156-177 270-291 (555)
173 PF00681 Plectin: Plectin repe 24.0 28 0.0006 23.9 0.2 19 232-251 17-35 (45)
174 smart00870 Asparaginase Aspara 21.1 2.9E+02 0.0063 27.3 6.8 31 89-119 55-85 (323)
175 PF06258 Mito_fiss_Elm1: Mitoc 21.1 5.4E+02 0.012 25.3 8.7 116 87-202 121-244 (311)
176 PLN00125 Succinyl-CoA ligase [ 20.6 2.1E+02 0.0046 28.1 5.6 13 164-176 232-244 (300)
177 PRK14053 methyltransferase; Pr 20.3 1.5E+02 0.0032 27.1 4.0 64 74-137 21-90 (194)
178 TIGR00225 prc C-terminal pepti 20.3 1.4E+02 0.0031 29.5 4.4 98 76-186 152-255 (334)
No 1
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.4e-74 Score=550.07 Aligned_cols=331 Identities=49% Similarity=0.777 Sum_probs=294.7
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
.+.|.++. ++..++||||||+++||||.+|+..+...|..|+.++.+++||+.|+|+|+||||||++...... .+...
T Consensus 37 ~~~VL~e~-~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~-~d~~~ 114 (401)
T KOG1684|consen 37 KDQVLVEG-KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESI-KDKET 114 (401)
T ss_pred CCceEEec-CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHh-hcCCc
Confidence 45688876 68899999999999999999999999999999999999999999999999999999999777654 34455
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (405)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~ 224 (405)
+....||+.+|.+++.|++|.||+||.+||++||||+||+++..||||||++.|+|||+.||+|||+|++|+|+|++|
T Consensus 115 ~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-- 192 (401)
T KOG1684|consen 115 PEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-- 192 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc--
Confidence 678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCCC-cchhhhhHHHHH
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG-EAPLKLLLPQIT 303 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~l~~~~~~i~ 303 (405)
.+|.||+|||.+++ +.||+..||++|+||++++..+.++|. ..+..+|...|.+.|.+|...+.. ...+....+.|+
T Consensus 193 ~lg~YLgLTG~rl~-GaD~~~~GlATHyv~S~~l~~Lee~L~-~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~ 270 (401)
T KOG1684|consen 193 YLGLYLGLTGQRLS-GADALRCGLATHYVPSEKLPSLEERLL-KNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVIN 270 (401)
T ss_pred HHHHhhhhccceec-chHHHHhcchhhccchhhhhHHHHHHh-hhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHH
Confidence 59999999999999 799999999999999999999999998 457888888999999999876433 334456788999
Q ss_pred HHcCCcccHHHHHHHHHhccCCccchhhHHHHHHHHHHhccCCchHHHHHHHHHHHhhhh----cCCcc----------C
Q 015541 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH----GKTDN----------E 369 (405)
Q Consensus 304 ~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~~l~~~SP~sl~vt~~~~~~~~~~~----~~~e~----------~ 369 (405)
+||+.+ ++|||++.|++..++. ++.+||+++++.|.++||+||+||+++++.++... ..+|+ |
T Consensus 271 ~~Fs~~-tVeeIie~lk~~q~~~--~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~D 347 (401)
T KOG1684|consen 271 KCFSAN-TVEEIIEALKNYQQSA--DGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGD 347 (401)
T ss_pred Hhhccc-cHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 999888 9999999987766422 24899999999999999999999999999877542 12333 3
Q ss_pred Ccc-----------CCCCCCCCcCCCCHHHHHhhccCCCCCCCCccC
Q 015541 370 LSK-----------NPKWNPASLEEVNQSEVEALFEPLGTGVEELKV 405 (405)
Q Consensus 370 ~~~-----------~P~W~~~sl~~V~~~~v~~~f~~~~~~~~~l~~ 405 (405)
|.+ +|||+|.+++||++++|+.||.|++. ..+|++
T Consensus 348 F~EGvRA~LIDKd~~PKW~p~~l~~V~e~~Vdn~F~~~p~-~~eLkl 393 (401)
T KOG1684|consen 348 FCEGVRAVLIDKDQNPKWDPASLADVTEDEVDNYFKPLPS-KSELKL 393 (401)
T ss_pred hhhhhhheeecCCcCCCCCCcchhhcCHHHHHHhccCCCC-cccccC
Confidence 333 99999999999999999999999776 677764
No 2
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.5e-68 Score=536.77 Aligned_cols=330 Identities=32% Similarity=0.568 Sum_probs=278.4
Q ss_pred CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (405)
Q Consensus 64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 143 (405)
.++.|.++. .+++++||||||+++||||.+|+.+|.++++.|+.|++|++|||+|+| ++||+|+|++++...... ..
T Consensus 40 ~~~~v~~e~-~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~G-kaFcAGgDl~~l~~~~~~-~~ 116 (407)
T PLN02851 40 LQDQVLVEG-RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGADVVSLYHLINE-GN 116 (407)
T ss_pred CCCCeEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHHhhccc-cc
Confidence 345677877 689999999999999999999999999999999999999999999998 899999999998763211 11
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (405)
Q Consensus 144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~ 223 (405)
......||..+|.+++.|.++|||+||+|||+|||||++|+++||||||+++++|+|||++||++|++|++|+|+|++|
T Consensus 117 ~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g- 195 (407)
T PLN02851 117 VEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPG- 195 (407)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcC-
Confidence 2345668899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCC-CCcchhhhhHHHH
Q 015541 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP-EGEAPLKLLLPQI 302 (405)
Q Consensus 224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~l~~~~~~i 302 (405)
..|+||+|||++++ |+||+++||||++||++++....+.+.+. ...+...+..++++|.... .....+...+..|
T Consensus 196 -~~g~~L~LTG~~i~-a~eA~~~GLa~~~v~~~~l~~l~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I 271 (407)
T PLN02851 196 -YLGEYLALTGQKLN-GVEMIACGLATHYCLNARLPLIEERLGKL--LTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETI 271 (407)
T ss_pred -HHHHHHHHhCCcCC-HHHHHHCCCceeecCHhhHHHHHHHHHhh--ccCCHHHHHHHHHHhccccCCCcccHHHHHHHH
Confidence 47999999999999 99999999999999999996655555433 2334456888899986431 2223455568899
Q ss_pred HHHcCCcccHHHHHHHHHhccCCccchhhHHHHHHHHHHhccCCchHHHHHHHHHHHhhhh----cCCc-----------
Q 015541 303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH----GKTD----------- 367 (405)
Q Consensus 303 ~~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~~l~~~SP~sl~vt~~~~~~~~~~~----~~~e----------- 367 (405)
++||+.+ ++++|++.|+..... ...+|++++++.|+++||+|++|||+++++++... ..+|
T Consensus 272 ~~~F~~~-sv~~I~~~L~~~~~~---~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~ 347 (407)
T PLN02851 272 DKCFGHD-TVEEIIEALENEAAS---SYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKW 347 (407)
T ss_pred HHHhCCC-CHHHHHHHHHhcccc---cchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 9999988 999999999975210 01589999999999999999999999999988531 1122
Q ss_pred --cCCcc-----------CCCCCCCCcCCCCHHHHHhhccCCCCCCCCccC
Q 015541 368 --NELSK-----------NPKWNPASLEEVNQSEVEALFEPLGTGVEELKV 405 (405)
Q Consensus 368 --~~~~~-----------~P~W~~~sl~~V~~~~v~~~f~~~~~~~~~l~~ 405 (405)
.||.+ +|+|+|+|++||++++|++||.|++.++.+|++
T Consensus 348 ~~~DF~EGVRA~LIDKd~~P~W~p~sl~~V~~~~v~~~f~~~~~~~~~l~~ 398 (407)
T PLN02851 348 VSGDFCEGVRARLVDKDFAPKWDPPSLGEVSKDMVDCYFTPLDESESELEL 398 (407)
T ss_pred ccchHHHHHHHHhcCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCcccccC
Confidence 24443 999999999999999999999999764446764
No 3
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=3.5e-68 Score=534.27 Aligned_cols=329 Identities=29% Similarity=0.530 Sum_probs=273.2
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
++.|.++. +++|++||||||+++||||.+|+.+|.++++.|+.|++|++|||+|+| ++||+|+||+++...... ...
T Consensus 36 ~~~V~~e~-~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~G-kaFcAGgDl~~l~~~~~~-~~~ 112 (401)
T PLN02157 36 DYQVLVEG-SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG-RAFCAGGDIVSLYHLRKR-GSP 112 (401)
T ss_pred CCceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCccCCcCHHHHHhhccc-cch
Confidence 45577876 689999999999999999999999999999999999999999999998 899999999998753211 111
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (405)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~ 224 (405)
.....+|..+|.+++.|+++|||+||+|||+|||||++|+++||||||+++++|+|||+++|++|++|++++|+|++|
T Consensus 113 ~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G-- 190 (401)
T PLN02157 113 DAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPG-- 190 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhh--
Confidence 223467888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCC-CCcchhhhhHHHHH
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP-EGEAPLKLLLPQIT 303 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~l~~~~~~i~ 303 (405)
..++||+|||++++ |+||+++||||++||++++. .+.+++..... .+...+..+++.+.... .....+..+.+.|.
T Consensus 191 ~~a~~L~LTG~~i~-A~eA~~~GLv~~vVp~~~l~-~~~~~~~~i~~-~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~ 267 (401)
T PLN02157 191 RLGEYLGLTGLKLS-GAEMLACGLATHYIRSEEIP-VMEEQLKKLLT-DDPSVVESCLEKCAEVAHPEKTGVIRRIDLLE 267 (401)
T ss_pred HHHHHHHHcCCcCC-HHHHHHcCCceEEeCHhHHH-HHHHHHHHHHc-CCHHHHHHHHHHHhcccCCcchhHHHHHHHHH
Confidence 37999999999999 99999999999999999985 44566665433 34456666666664331 12234555678899
Q ss_pred HHcCCcccHHHHHHHHHhccCCccchhhHHHHHHHHHHhccCCchHHHHHHHHHHHhhhh----cCC-------------
Q 015541 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH----GKT------------- 366 (405)
Q Consensus 304 ~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~~l~~~SP~sl~vt~~~~~~~~~~~----~~~------------- 366 (405)
.||+++ ++++|++.|+...+. ..++|++++++.|+++||+|++|||+++++++... ..+
T Consensus 268 ~~f~~~-d~~ei~~al~~~~~k---r~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~ 343 (401)
T PLN02157 268 KCFSHD-TVEEIIDSLEIEAGR---RKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPM 343 (401)
T ss_pred HHhcCC-CHHHHHHHHHhhhcc---cchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCC
Confidence 999988 999999999653110 01789999999999999999999999999988531 111
Q ss_pred ccCCcc-----------CCCCCCCCcCCCCHHHHHhhccCCCCCCCCccC
Q 015541 367 DNELSK-----------NPKWNPASLEEVNQSEVEALFEPLGTGVEELKV 405 (405)
Q Consensus 367 e~~~~~-----------~P~W~~~sl~~V~~~~v~~~f~~~~~~~~~l~~ 405 (405)
..||.+ +|+|+|+|++||++++|++||.|+++++.+|++
T Consensus 344 ~~DF~EGVRA~LiDKd~~P~W~p~~l~~V~~~~v~~~f~~~~~~~~~l~~ 393 (401)
T PLN02157 344 SGNFCEGVRARLIDKDEAPKWDPPSLEKVSEDMVDDYFCALTPTEPDLDL 393 (401)
T ss_pred CchHHHHHHHHHcCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCcccccc
Confidence 134543 999999999999999999999999743445654
No 4
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=5.2e-68 Score=531.23 Aligned_cols=328 Identities=36% Similarity=0.625 Sum_probs=275.7
Q ss_pred ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (405)
Q Consensus 66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 145 (405)
+.|.++. +++|++||||||+++|+||.+|+.+|.++|+.|+.|++|++|||+|+| ++||+|+|++++...... ....
T Consensus 9 ~~v~~~~-~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G-~~FcAGgDl~~l~~~~~~-~~~~ 85 (381)
T PLN02988 9 SQVLVEE-KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVRDIEQ-GNWR 85 (381)
T ss_pred CceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCcccCcCHHHHHhhhcc-cchh
Confidence 3477776 689999999999999999999999999999999999999999999998 899999999998642211 1112
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (405)
Q Consensus 146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~ 225 (405)
....||..+|.+++.|.++|||+||+|||+|||||++|+++||||||+++++|+|||+++|++|++|++++|+|++| .
T Consensus 86 ~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G--~ 163 (381)
T PLN02988 86 LGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPG--F 163 (381)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHH--H
Confidence 23457888888889999999999999999999999999999999999999999999999999999999999999999 4
Q ss_pred HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCC-CcchhhhhHHHHHH
Q 015541 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE-GEAPLKLLLPQITS 304 (405)
Q Consensus 226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~l~~~~~~i~~ 304 (405)
.++||+|||++++ |+||+++||||++||++++.+.+.+++.. ...+...+..+++.+...+. ....+...+..|++
T Consensus 164 ~~~~l~LTG~~i~-a~eA~~~GLv~~vv~~~~l~~~~~~la~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 240 (381)
T PLN02988 164 FGEYVGLTGARLD-GAEMLACGLATHFVPSTRLTALEADLCRI--GSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDR 240 (381)
T ss_pred HHHHHHHcCCCCC-HHHHHHcCCceEecCHhHHHHHHHHHHHh--hccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Confidence 7999999999999 99999999999999999999999998832 33444457777777764431 12234446889999
Q ss_pred HcCCcccHHHHHHHHHhccCCccchhhHHHHHHHHHHhccCCchHHHHHHHHHHHhhhh----cC----------C---c
Q 015541 305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH----GK----------T---D 367 (405)
Q Consensus 305 ~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~~l~~~SP~sl~vt~~~~~~~~~~~----~~----------~---e 367 (405)
||+.+ ++++|++.|++.... + ..+|++++++.|+++||+|++|||+++++++... .. . .
T Consensus 241 ~f~~~-~~~~i~~~L~~~~~~-~--~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~ 316 (381)
T PLN02988 241 CFSRR-TVEEIISALEREATQ-E--ADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEIS 316 (381)
T ss_pred HhCCC-CHHHHHHHHHhhccc-c--ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 99988 999999999974210 0 1589999999999999999999999999987531 11 1 2
Q ss_pred cCCcc-----------CCCCCCCCcCCCCHHHHHhhccCCCCCCC--CccC
Q 015541 368 NELSK-----------NPKWNPASLEEVNQSEVEALFEPLGTGVE--ELKV 405 (405)
Q Consensus 368 ~~~~~-----------~P~W~~~sl~~V~~~~v~~~f~~~~~~~~--~l~~ 405 (405)
.||.+ +|+|+|+|++||++++|++||.|++.+++ +|++
T Consensus 317 ~DF~EGVRA~LiDKd~~P~W~p~~l~~v~~~~v~~~f~~~~~~~~~~~l~~ 367 (381)
T PLN02988 317 KDFVEGCRAILVDKDKNPKWEPRRLEDMKDSMVEQYFERVEEEEEWDDLKL 367 (381)
T ss_pred chHHHhHHHHhcCCCCCCCCCCCChhhCCHHHHHHHhCCCCccccccccCC
Confidence 45554 89999999999999999999999876332 5764
No 5
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2.2e-59 Score=470.39 Aligned_cols=328 Identities=34% Similarity=0.605 Sum_probs=270.3
Q ss_pred CCCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541 63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (405)
Q Consensus 63 ~~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~ 142 (405)
++++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|+| ++||+|+|++++.... .
T Consensus 8 ~~~~~v~~~~-~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~---~ 82 (379)
T PLN02874 8 PAEEVVLGEE-KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAG-RAFSAGGDLKMFYDGR---E 82 (379)
T ss_pred CCCCceEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCccCHHHHHhhc---c
Confidence 3456688876 689999999999999999999999999999999999999999999997 8999999999876421 1
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541 143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222 (405)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G 222 (405)
.......++...+.+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 83 ~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g 162 (379)
T PLN02874 83 SDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPG 162 (379)
T ss_pred cchHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhH
Confidence 11122345556667788999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCC-CCcchhhhhHHH
Q 015541 223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP-EGEAPLKLLLPQ 301 (405)
Q Consensus 223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~l~~~~~~ 301 (405)
..+++|+|||++++ |+||+++|||+++||++++.+.+.++.+. ...+...++.+++.+.... .....+....+.
T Consensus 163 --~~a~~l~ltG~~i~-a~eA~~~GLv~~vv~~~~l~~~~~~l~~l--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (379)
T PLN02874 163 --HLGEYLALTGARLN-GKEMVACGLATHFVPSEKLPELEKRLLNL--NSGDESAVQEAIEEFSKDVQADEDSILNKQSW 237 (379)
T ss_pred --HHHHHHHHcCCccc-HHHHHHcCCccEEeCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHhhcccCCCcchhHHHHHH
Confidence 37999999999999 99999999999999999888766666543 3344567899998876432 223345556888
Q ss_pred HHHHcCCcccHHHHHHHHHhccCCccchhhHHHHHHHHHHhccCCchHHHHHHHHHHHhhhh----cC----------C-
Q 015541 302 ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH----GK----------T- 366 (405)
Q Consensus 302 i~~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~~l~~~SP~sl~vt~~~~~~~~~~~----~~----------~- 366 (405)
|.+||+.+ ++++|++.|++...+ +. .+|+.++++.|.++||+|+++|+++++++.... .. .
T Consensus 238 i~~~f~~~-~~~eii~al~~~~~~-~~--~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~ 313 (379)
T PLN02874 238 INECFSKD-TVEEIIKAFESEASK-TG--NEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRS 313 (379)
T ss_pred HHHHhCCC-CHHHHHHHHhhcccc-cc--cHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhc
Confidence 99999998 999999999875321 11 589999999999999999999999999764310 00 1
Q ss_pred --ccCCc-----------cCCCCCCCCcCCCCHHHHHhhccCCCCCCCCccC
Q 015541 367 --DNELS-----------KNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV 405 (405)
Q Consensus 367 --e~~~~-----------~~P~W~~~sl~~V~~~~v~~~f~~~~~~~~~l~~ 405 (405)
..|+. .+|+|+++|+++|++++|++||.|+.. +.||++
T Consensus 314 ~~~~D~~EGv~AflidK~r~P~w~~~~~~~v~~~~v~~~f~~~~~-~~~~~~ 364 (379)
T PLN02874 314 TVSDDVYEGIRALVIDKDNAPKWNPSTLDEVTDEKVDLVFQPFKA-REELQL 364 (379)
T ss_pred CcCcchhhccceEEEcCCCCCCCCCCChhhCCHHHHHHHhCCCCC-ccccCC
Confidence 11211 279999999999999999999999755 334553
No 6
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=4.5e-58 Score=455.60 Aligned_cols=314 Identities=41% Similarity=0.725 Sum_probs=267.6
Q ss_pred cEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (405)
Q Consensus 67 ~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (405)
.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.|+++||+|+|++++...... .....
T Consensus 4 ~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~-~~~~~ 81 (342)
T PRK05617 4 EVLAEV-EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARA-GDPLA 81 (342)
T ss_pred eEEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhcc-CCchh
Confidence 477776 6899999999999999999999999999999999999999999999987899999999998652211 11111
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (405)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~ 226 (405)
...++...++++..|..+|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| . .
T Consensus 82 ~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~-~ 159 (342)
T PRK05617 82 ADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-A-L 159 (342)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-H-H
Confidence 1245666677888999999999999999999999999999999999999999999999999999999999999987 4 8
Q ss_pred HHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHc
Q 015541 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF 306 (405)
Q Consensus 227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f 306 (405)
+++|+|||++++ |+||+++|||+++||++++.+..++++...+ .+..+.++.++.++....+ ...+......|++||
T Consensus 160 a~~llltG~~i~-A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~ 236 (342)
T PRK05617 160 GTYLALTGARIS-AADALYAGLADHFVPSADLPALLDALISLRW-DSGADVVDAALAAFATPAP-ASELAAQRAWIDECF 236 (342)
T ss_pred HHHHHHcCCCCC-HHHHHHcCCcceecCHHHHHHHHHHHHhcCC-ccchhHHHHHHHHhccCCC-cchhHHHHHHHHHHh
Confidence 999999999999 9999999999999999988887777775533 3334567888888866533 457888899999999
Q ss_pred CCcccHHHHHHHHHhccCCccchhhHHHHHHHHHHhccCCchHHHHHHHHHHHhhhh----------------cCC----
Q 015541 307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH----------------GKT---- 366 (405)
Q Consensus 307 ~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~~l~~~SP~sl~vt~~~~~~~~~~~----------------~~~---- 366 (405)
+.. ++++|++.|++.. ++|+.++++.|.++||.+++.+++++++..... ...
T Consensus 237 ~~~-~~~~~~~~l~~~~-------~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e 308 (342)
T PRK05617 237 AGD-TVEDIIAALEADG-------GEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVE 308 (342)
T ss_pred CCC-CHHHHHHHHHhcc-------HHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhh
Confidence 987 9999999999886 789999999999999999999999998753210 000
Q ss_pred --ccCC---ccCCCCCCCCcCCCCHHHHHhhccC
Q 015541 367 --DNEL---SKNPKWNPASLEEVNQSEVEALFEP 395 (405)
Q Consensus 367 --e~~~---~~~P~W~~~sl~~V~~~~v~~~f~~ 395 (405)
.-.+ .+.|+|+++|++||++++|++||+|
T Consensus 309 gv~afl~ek~r~p~~~~~~~~~~~~~~~~~~~~~ 342 (342)
T PRK05617 309 GVRAVLIDKDRNPKWSPATLEDVTPEDVEAFFAP 342 (342)
T ss_pred ccceEEEcCCCCCCCCCCChHhCCHHHHHHhhCC
Confidence 1112 1379999999999999999999997
No 7
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.6e-50 Score=382.67 Aligned_cols=252 Identities=25% Similarity=0.331 Sum_probs=212.2
Q ss_pred cEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (405)
Q Consensus 67 ~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (405)
.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.|+++||+|+|++++..... ......
T Consensus 4 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~~ 81 (260)
T PRK05980 4 TVLIEI-RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVA-AGADVA 81 (260)
T ss_pred eEEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhcc-ccchhh
Confidence 477776 699999999999999999999999999999999999999999999998789999999998754211 011112
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (405)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~ 226 (405)
...++...+.++..|..+|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. .
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~ 160 (260)
T PRK05980 82 LRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRK-R 160 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHH-H
Confidence 345666666788899999999999999999999999999999999999999999999999999999999999999987 9
Q ss_pred HHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHH
Q 015541 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITS 304 (405)
Q Consensus 227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~ 304 (405)
+++|++||++++ |+||+++||||++||++++.+.+.+++.......|. ..+|+.++..... .....+..+...+..
T Consensus 161 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~~~~~~~~-~~~~~~~~e~~~~~~ 238 (260)
T PRK05980 161 ALELLLTGDAFS-AERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVAAILTAVTRGLNL-SIAEGLLIESEQFAR 238 (260)
T ss_pred HHHHHHcCCccC-HHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999998874444442 3345555443221 123345556677889
Q ss_pred HcCCcccHHHHHHHHHhcc
Q 015541 305 CFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 305 ~f~~~~~ve~i~~~Le~~~ 323 (405)
+|.+++..+++.++++++.
T Consensus 239 ~~~~~~~~e~~~af~~kr~ 257 (260)
T PRK05980 239 MAGSADLREGLAAWIERRR 257 (260)
T ss_pred HhcChhHHHHHHHHhccCC
Confidence 9999888999999999886
No 8
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-50 Score=375.78 Aligned_cols=253 Identities=23% Similarity=0.327 Sum_probs=209.1
Q ss_pred CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (405)
Q Consensus 64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 143 (405)
.+..+.....+++|+.||||||+++|||+..|+.+|.+++..++.|+.+.++||||.| ++||+|+||+++......+.
T Consensus 34 ~~~~~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~g-ksFcsG~Dl~e~~~~~~~~~- 111 (290)
T KOG1680|consen 34 EPIKIELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSG-KSFCSGADLKEMKKDEFQDV- 111 (290)
T ss_pred CcceeEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCC-CccccccCHHHHhhcccccc-
Confidence 3334444445789999999999999999999999999999999999999999999997 99999999999876221111
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (405)
Q Consensus 144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~ 223 (405)
....|. +....+.+.+||+||+|||+|+|||++|+++||+|||+++++|++||.++|++|.+|+|++|+|.+|.
T Consensus 112 ---~~~~~~---~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~ 185 (290)
T KOG1680|consen 112 ---SDGIFL---RVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGK 185 (290)
T ss_pred ---cccccc---chhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhCh
Confidence 111222 22334558999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHH---HHHHHHhcCCCCCcchhhhhHH
Q 015541 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI---VALLAKYSSDPEGEAPLKLLLP 300 (405)
Q Consensus 224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i---~~~l~~~~~~~~~~~~l~~~~~ 300 (405)
+ +|+++++||++++ |+||.++|||++|||.+++...+.+|+... .+.|+..+ |+.++.- .+......++.+..
T Consensus 186 s-~Ale~~ltg~~~~-AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~I-a~~~~~~v~~~K~svn~~-~e~~l~e~l~~e~~ 261 (290)
T KOG1680|consen 186 S-RALEMILTGRRLG-AQEAKKIGLVNKVVPSGDALGEAVKLAEQI-AKNSPLVVRADKESVNAA-YETTLFEGLELERD 261 (290)
T ss_pred H-HHHHHHHhcCccc-HHHHHhCCceeEeecchhHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH-hhccHHHHHHhhhh
Confidence 7 9999999999999 999999999999999999999999999884 55555444 4444441 11222344566666
Q ss_pred HHHHHcCCcccHHHHHHHHHhccCCccchhhHHHH
Q 015541 301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWAD 335 (405)
Q Consensus 301 ~i~~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~ 335 (405)
.+...|..++..|++.++.++++ ++|.+
T Consensus 262 ~~~s~~~~~d~~Eg~~~f~~kr~-------~~~~k 289 (290)
T KOG1680|consen 262 LFGSTFATEDRLEGMTAFAEKRK-------PKFSK 289 (290)
T ss_pred hhhhhhhhHHHHHHHHHhcccCC-------ccccc
Confidence 78888888889999999988887 67753
No 9
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-49 Score=382.63 Aligned_cols=253 Identities=23% Similarity=0.286 Sum_probs=215.2
Q ss_pred CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (405)
Q Consensus 64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 143 (405)
+.+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|+++||+|+|++++.... ..
T Consensus 9 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~---~~ 84 (269)
T PRK06127 9 PTGKLLAEK-TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESR---SD 84 (269)
T ss_pred CCCceEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcc---cc
Confidence 456688887 68999999999999999999999999999999999999999999999878999999999875411 11
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (405)
Q Consensus 144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~ 223 (405)
......++...+.++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus 85 ~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 164 (269)
T PRK06127 85 AEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGP 164 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCH
Confidence 12233455666678889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ 301 (405)
Q Consensus 224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~ 301 (405)
. ++++|++||+.++ |+||+++||||++||++++.+.+.++++......|. ..+|+.++..... .....++.+...
T Consensus 165 ~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~ 241 (269)
T PRK06127 165 S-AAKDLFYTARRFD-AAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAKRAIAELLKD-EPERDMAACQAL 241 (269)
T ss_pred H-HHHHHHHcCCCCC-HHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 7 9999999999999 999999999999999999999999999875443333 3445555543221 223445566677
Q ss_pred HHHHcCCcccHHHHHHHHHhcc
Q 015541 302 ITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 302 i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
+..+|.+++..|++.++++++.
T Consensus 242 ~~~~~~~~d~~e~~~af~ekr~ 263 (269)
T PRK06127 242 VAACFDSEDYREGRAAFMEKRK 263 (269)
T ss_pred HHHHhcChHHHHHHHHHhcCCC
Confidence 8899999888999999999887
No 10
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-49 Score=378.29 Aligned_cols=249 Identities=21% Similarity=0.322 Sum_probs=211.2
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
++++.++..+++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.|+++||+|+|++++... ..
T Consensus 5 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~-----~~ 79 (256)
T PRK06143 5 NAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATL-----DQ 79 (256)
T ss_pred cccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhc-----Ch
Confidence 3457777667899999999999999999999999999999999999999999999987899999999987541 11
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (405)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~ 224 (405)
.....++.....++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|+ |++|++++|++++|..
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~ 158 (256)
T PRK06143 80 ASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWA 158 (256)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHH
Confidence 223445566677888999999999999999999999999999999999999999999999998 8899999999999997
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI 302 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i 302 (405)
.+++|++||+.++ |+||+++||||++||++++.+.+.+++.......|. ..+|+.++.... ......+..+...+
T Consensus 159 -~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~l~~~~~~e~~~~ 235 (256)
T PRK06143 159 -RTRWLLLTGETID-AAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALRQQKRLLREWED-MPLDVAIDDSVAEF 235 (256)
T ss_pred -HHHHHHHcCCcCC-HHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999885444443 445666655322 12233455566678
Q ss_pred HHHcCCcccHHHHHHHHHhc
Q 015541 303 TSCFSSEKSVRQIIEELKKH 322 (405)
Q Consensus 303 ~~~f~~~~~ve~i~~~Le~~ 322 (405)
..+|.+++..|++.++++++
T Consensus 236 ~~~~~~~d~~e~~~af~ekr 255 (256)
T PRK06143 236 GAAFLTGEPQRHMAAFLNRK 255 (256)
T ss_pred HHHhcChHHHHHHHHHHhhc
Confidence 88898887889999998876
No 11
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-49 Score=379.00 Aligned_cols=249 Identities=21% Similarity=0.300 Sum_probs=212.3
Q ss_pred ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (405)
Q Consensus 66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 145 (405)
+.|.+++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++... ...
T Consensus 3 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~-----~~~ 77 (260)
T PRK07657 3 QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGM-----NEE 77 (260)
T ss_pred ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcC-----Chh
Confidence 467787546899999999999999999999999999999999999999999999986799999999987531 112
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (405)
Q Consensus 146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~ 225 (405)
....++...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.+
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~- 156 (260)
T PRK07657 78 QVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG- 156 (260)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHH-
Confidence 2344556667788899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHH---HHHHHHHhcCCCCCcchhhhhHHHH
Q 015541 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD---IVALLAKYSSDPEGEAPLKLLLPQI 302 (405)
Q Consensus 226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~l~~~~~~i 302 (405)
.+++|++||++++ |+||+++||||++||++++.+.+.+++++. ...|..+ +|..++.... ......+..+...+
T Consensus 157 ~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l-~~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~ 233 (260)
T PRK07657 157 RAKELIYTGRRIS-AQEAKEIGLVEFVVPAHLLEEKAIEIAEKI-ASNGPIAVRQAKEAISNGIQ-VDLHTGLQIEKQAY 233 (260)
T ss_pred HHHHHHHhCCCCC-HHHHHHcCCCCeecCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999874 4444434 4555543211 11233455566678
Q ss_pred HHHcCCcccHHHHHHHHHhcc
Q 015541 303 TSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 303 ~~~f~~~~~ve~i~~~Le~~~ 323 (405)
..++.+++..|++.++++++.
T Consensus 234 ~~~~~~~~~~e~~~af~~~r~ 254 (260)
T PRK07657 234 EGTIPTKDRLEGLQAFKEKRK 254 (260)
T ss_pred HHHhcCHhHHHHHHHHhcCCC
Confidence 888998889999999999886
No 12
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.4e-49 Score=377.06 Aligned_cols=246 Identities=23% Similarity=0.293 Sum_probs=208.1
Q ss_pred EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (405)
Q Consensus 68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (405)
|.++. +++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||+|+|+++||+|+|++++... .....
T Consensus 5 v~~~~-~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~-----~~~~~ 77 (258)
T PRK09076 5 LDLEI-DGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADG-----DKAVA 77 (258)
T ss_pred EEEEE-ECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhc-----ChhhH
Confidence 67776 68999999999986 9999999999999999999999999999999987899999999987531 11112
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541 148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG 227 (405)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a 227 (405)
..+......++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. .+
T Consensus 78 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~-~a 156 (258)
T PRK09076 78 REMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEG-WA 156 (258)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHH-HH
Confidence 33444455678889999999999999999999999999999999999999999999999999999999999999986 99
Q ss_pred HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHHH
Q 015541 228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITSC 305 (405)
Q Consensus 228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~ 305 (405)
++|+|||++++ |+||+++||||++||++++.+.+.++++......|. ..+|+.++.... ......+..+...+..+
T Consensus 157 ~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~~~~ 234 (258)
T PRK09076 157 KRMILCGERVD-AATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVAACKTLIQAARN-GPRAAALALERELFVDL 234 (258)
T ss_pred HHHHHcCCcCC-HHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999998875444443 344555544321 11233455566678889
Q ss_pred cCCcccHHHHHHHHHhcc
Q 015541 306 FSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 306 f~~~~~ve~i~~~Le~~~ 323 (405)
+.+++..|++.++++++.
T Consensus 235 ~~~~~~~eg~~af~~kr~ 252 (258)
T PRK09076 235 FDTEDQREGVNAFLEKRA 252 (258)
T ss_pred hcCchHHHHHHHHhcCCC
Confidence 998888999999999887
No 13
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=4.4e-49 Score=378.11 Aligned_cols=251 Identities=27% Similarity=0.339 Sum_probs=211.6
Q ss_pred CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (405)
Q Consensus 64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 143 (405)
.++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|+|+++||+|+|++++... .
T Consensus 2 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~-----~ 75 (260)
T PRK05809 2 ELKNVILEK-EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDL-----N 75 (260)
T ss_pred CcceEEEEE-eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhcc-----C
Confidence 355678876 6899999999999999999999999999999999999999999999987899999999987541 1
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (405)
Q Consensus 144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~ 223 (405)
......+......++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 155 (260)
T PRK05809 76 EEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGP 155 (260)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence 11222344444567888999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ 301 (405)
Q Consensus 224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~ 301 (405)
. .+++|++||+.++ |+||+++||||+++|++++.+.+.+++.......|. ..+|+.++.... ......++.+...
T Consensus 156 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~ 232 (260)
T PRK05809 156 G-KAKELIYTGDMIN-AEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCKDAINRGMQ-VDIDTAVAIEAED 232 (260)
T ss_pred H-HHHHHHHhCCCCC-HHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Confidence 7 9999999999999 999999999999999999999999998874444443 334555544221 1112345556667
Q ss_pred HHHHcCCcccHHHHHHHHHhcc
Q 015541 302 ITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 302 i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
+..+|.+++..|++.++++++.
T Consensus 233 ~~~~~~~~~~~egi~af~~~r~ 254 (260)
T PRK05809 233 FGECFSTEDQTEGMTAFVEKRE 254 (260)
T ss_pred HHHHhcCHHHHHHHHHHhcCCC
Confidence 8889998888999999999886
No 14
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-49 Score=376.72 Aligned_cols=247 Identities=23% Similarity=0.262 Sum_probs=208.5
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
++.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++... .
T Consensus 3 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~-----~- 74 (257)
T PRK05862 3 YETILVET-RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSE-KAFAAGADIKEMADL-----S- 74 (257)
T ss_pred CceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CceECCcChHhHhcc-----c-
Confidence 34577776 689999999999999999999999999999999999999999999997 899999999987531 1
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (405)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~ 224 (405)
....+......++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 75 -~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 153 (257)
T PRK05862 75 -FMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKA 153 (257)
T ss_pred -hhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHH
Confidence 1112233344567789999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI 302 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i 302 (405)
++++|++||+.++ |+||+++||||++||++++.+.+.+++.+.....|. ..+|.+++..... .....+..+...+
T Consensus 154 -~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~l~~~~~~e~~~~ 230 (257)
T PRK05862 154 -KAMDLCLTGRMMD-AAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVMMAKEAVNRAYET-TLAEGLLFERRLF 230 (257)
T ss_pred -HHHHHHHhCCccC-HHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999998875433333 4456666543222 2233455566678
Q ss_pred HHHcCCcccHHHHHHHHHhcc
Q 015541 303 TSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 303 ~~~f~~~~~ve~i~~~Le~~~ 323 (405)
..++.+++..+++.++++++.
T Consensus 231 ~~~~~s~~~~e~i~af~~kr~ 251 (257)
T PRK05862 231 HSLFATEDQKEGMAAFVEKRK 251 (257)
T ss_pred HHHhcChhHHHHHHHHhccCC
Confidence 888888888999999998886
No 15
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=4.9e-49 Score=375.85 Aligned_cols=242 Identities=22% Similarity=0.323 Sum_probs=207.5
Q ss_pred eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHH
Q 015541 74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA 153 (405)
Q Consensus 74 ~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (405)
+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++... .......++..
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~-----~~~~~~~~~~~ 76 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKM-----SPSEVQKFVNS 76 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhcc-----ChHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999866899999999987541 11223445666
Q ss_pred HHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhc
Q 015541 154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 233 (405)
Q Consensus 154 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~lt 233 (405)
...++..+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. ++++|+||
T Consensus 77 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~-~a~~l~lt 155 (251)
T PLN02600 77 LRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRS-RAKELIFT 155 (251)
T ss_pred HHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHH-HHHHHHHh
Confidence 67788899999999999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred CCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHHHcCCccc
Q 015541 234 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKS 311 (405)
Q Consensus 234 G~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f~~~~~ 311 (405)
|++++ |+||+++||||++||++++.+.+.+++.......|. ..+|++++.... ......+..+...+..+|.+++.
T Consensus 156 g~~~~-a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~~~~~~~~d~ 233 (251)
T PLN02600 156 GRRIG-AREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIKMAKKAINEGSE-VDMASGLEIEEECYEQVLKTKDR 233 (251)
T ss_pred CCccC-HHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhCCHHH
Confidence 99999 999999999999999999999999988774443333 344555554322 22233455566678899999989
Q ss_pred HHHHHHHHHhcc
Q 015541 312 VRQIIEELKKHQ 323 (405)
Q Consensus 312 ve~i~~~Le~~~ 323 (405)
.|++.++++++.
T Consensus 234 ~eg~~af~ekr~ 245 (251)
T PLN02600 234 LEGLAAFAEKRK 245 (251)
T ss_pred HHHHHHHhcCCC
Confidence 999999999987
No 16
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=6.8e-49 Score=375.91 Aligned_cols=246 Identities=17% Similarity=0.177 Sum_probs=205.2
Q ss_pred ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (405)
Q Consensus 66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 145 (405)
+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||+|+++||+|+|++++... ..
T Consensus 2 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~----~~-- 74 (256)
T TIGR03210 2 EDILYEK-RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG----YD-- 74 (256)
T ss_pred CceEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc----cc--
Confidence 4577776 6899999999999999999999999999999999999999999999987899999999987421 11
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (405)
Q Consensus 146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~ 225 (405)
....+......++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|++|..
T Consensus 75 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~- 153 (256)
T TIGR03210 75 GRGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEK- 153 (256)
T ss_pred chhHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHH-
Confidence 1111223345677889999999999999999999999999999999999999999999999998888899999999997
Q ss_pred HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhh-hhHHHH
Q 015541 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLK-LLLPQI 302 (405)
Q Consensus 226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~-~~~~~i 302 (405)
++++|++||++++ |+||+++||||++||++++.+.+.++++......|. ..+|++++..... ...++ .+...+
T Consensus 154 ~A~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~---~~~~~~~~~~~~ 229 (256)
T TIGR03210 154 KAREIWYLCRRYT-AQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIAIAKRSFNMDTAH---QRGIAGMGMYAL 229 (256)
T ss_pred HHHHHHHhCCCcC-HHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc---cchHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999885444443 3445555543211 11111 123456
Q ss_pred HHHcCCcccHHHHHHHHHhcc
Q 015541 303 TSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 303 ~~~f~~~~~ve~i~~~Le~~~ 323 (405)
..+|.+++..|++.++++++.
T Consensus 230 ~~~~~~~d~~e~~~af~~kr~ 250 (256)
T TIGR03210 230 KLYYDTAESREGVKAFQEKRK 250 (256)
T ss_pred HHHccChhHHHHHHHHhccCC
Confidence 778888889999999999887
No 17
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-48 Score=377.35 Aligned_cols=253 Identities=21% Similarity=0.272 Sum_probs=209.5
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhh---C
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQK---D 141 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~---~ 141 (405)
++.|.++. +++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++...... .
T Consensus 5 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~~~~ 82 (272)
T PRK06142 5 YESFTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSG-KHFSYGIDLPAMAGVFGQLGKD 82 (272)
T ss_pred cceEEEEe-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhhhccccccc
Confidence 45688886 689999999999999999999999999999999999999999999997 899999999987542100 0
Q ss_pred ---CCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHh
Q 015541 142 ---RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA 218 (405)
Q Consensus 142 ---~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~ 218 (405)
........+.....+++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~ 162 (272)
T PRK06142 83 GLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLP 162 (272)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHH
Confidence 00111222334445677889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCC-CChHHHHHHHHHhhcCCCcHHH---HHHHHHHhcCCCCCcch
Q 015541 219 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPHQD---IVALLAKYSSDPEGEAP 294 (405)
Q Consensus 219 r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~ 294 (405)
+++|.. ++++|++||++++ |+||+++||||++||+ +++.+.+.+++... ...|+.+ +|..++..... .....
T Consensus 163 ~~~G~~-~a~~l~l~g~~~~-a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~i-a~~~~~a~~~~K~~l~~~~~~-~l~~~ 238 (272)
T PRK06142 163 RIIGDG-HLRELALTGRDID-AAEAEKIGLVNRVYDDADALLAAAHATAREI-AAKSPLAVRGTKEVLDYMRDH-RVADG 238 (272)
T ss_pred HHhCHH-HHHHHHHhCCCcC-HHHHHHcCCccEecCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhhcC-CHHHH
Confidence 999997 9999999999999 9999999999999996 78999999998875 4444434 45555443211 11234
Q ss_pred hhhhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541 295 LKLLLPQITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 295 l~~~~~~i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
+..+......+|.+++..|++.++++++.
T Consensus 239 ~~~~~~~~~~~~~~~d~~egv~af~~kr~ 267 (272)
T PRK06142 239 LRYVATWNAAMLPSKDLTEAIAAHMEKRP 267 (272)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHhcCCC
Confidence 44555667788999889999999999887
No 18
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-48 Score=373.64 Aligned_cols=248 Identities=23% Similarity=0.316 Sum_probs=209.4
Q ss_pred CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (405)
Q Consensus 64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 143 (405)
+++.+.++..+++|++||||||+++|+||.+|+.+|.++++.+++|+++|+|||+|.| ++||+|+|++++... .
T Consensus 5 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~----~- 78 (261)
T PRK08138 5 ATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGE-KVFAAGADIKEFATA----G- 78 (261)
T ss_pred CCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCeeCCcCHHHHhcc----c-
Confidence 3566788775689999999999999999999999999999999999999999999987 799999999987531 1
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (405)
Q Consensus 144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~ 223 (405)
....+....++++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.
T Consensus 79 --~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 156 (261)
T PRK08138 79 --AIEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGK 156 (261)
T ss_pred --hhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCH
Confidence 122334445667888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH---HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH---QDIVALLAKYSSDPEGEAPLKLLLP 300 (405)
Q Consensus 224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~---~~i~~~l~~~~~~~~~~~~l~~~~~ 300 (405)
. .+++|+|||++++ |+||+++||||++||++++.+.+.+++.... ..|. ..+|+.++..... .....+..+..
T Consensus 157 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~-~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~ 232 (261)
T PRK08138 157 F-KAMRMALTGCMVP-APEALAIGLVSEVVEDEQTLPRALELAREIA-RMPPLALAQIKEVVLAGADA-PLDAALALERK 232 (261)
T ss_pred H-HHHHHHHcCCCCC-HHHHHHCCCCcEecCchHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 7 9999999999999 9999999999999999999999999987744 4444 3345555433211 11234455566
Q ss_pred HHHHHcCCcccHHHHHHHHHhcc
Q 015541 301 QITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 301 ~i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
.+..+|.+++..+++-++++++.
T Consensus 233 ~~~~~~~~~~~~~~i~af~~kr~ 255 (261)
T PRK08138 233 AFQLLFDSEDQKEGMDAFLEKRK 255 (261)
T ss_pred HHHHHhcCHHHHHHHHHHhcCCC
Confidence 78888988878889999998876
No 19
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.4e-48 Score=371.88 Aligned_cols=246 Identities=21% Similarity=0.269 Sum_probs=205.2
Q ss_pred ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (405)
Q Consensus 66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 145 (405)
+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++ +++|+|||||.| ++||+|+|++++... ...
T Consensus 2 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g-~~F~aG~Dl~~~~~~-----~~~ 72 (255)
T PRK08150 2 SLVSYEL-DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEG-DHFCAGLDLSELRER-----DAG 72 (255)
T ss_pred ceEEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCC-CceecCcCHHHHhhc-----cch
Confidence 3577776 6899999999999999999999999999999987 789999999997 799999999987541 111
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (405)
Q Consensus 146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~ 225 (405)
....++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus 73 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~- 151 (255)
T PRK08150 73 EGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVA- 151 (255)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHH-
Confidence 1223445556778889999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHH
Q 015541 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (405)
Q Consensus 226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~ 303 (405)
.+++|+|||++++ |+||+++||||++||.+++.+.+.++++......|. ..+|+.++..... .....+..+.....
T Consensus 152 ~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~~~ 229 (255)
T PRK08150 152 RMTDMMLTGRVYD-AQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNFAVLNALPRIADM-SADDGLFVESLMAA 229 (255)
T ss_pred HHHHHHHcCCcCC-HHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999998875444443 3345555543211 11233444455567
Q ss_pred HHcCCcccHHHHHHHHHhcc
Q 015541 304 SCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 304 ~~f~~~~~ve~i~~~Le~~~ 323 (405)
.+|.+++..|++.++++++.
T Consensus 230 ~~~~s~d~~eg~~af~~kr~ 249 (255)
T PRK08150 230 VAQSAPEAKERLRAFLEKKA 249 (255)
T ss_pred HHhcCHHHHHHHHHHhccCC
Confidence 78888878999999999886
No 20
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-48 Score=372.87 Aligned_cols=247 Identities=22% Similarity=0.302 Sum_probs=202.6
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|+|+++||+|+|++++.... ...
T Consensus 3 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~---~~~ 78 (259)
T PRK06494 3 LPFSTVER-KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGG---KRG 78 (259)
T ss_pred CceeEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcC---cch
Confidence 56688876 68999999999999999999999999999999999999999999999878999999999875411 110
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (405)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~ 224 (405)
.. ...+ ..+ ..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus 79 ~~-~~~~---~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 153 (259)
T PRK06494 79 WP-ESGF---GGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLK 153 (259)
T ss_pred hh-hHHH---HHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHH
Confidence 01 1111 122 335689999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhh--HH
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLL--LP 300 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~--~~ 300 (405)
.+++|++||+.++ |+||+++||||++||++++.+.+.++++......|. ...|+.++.... ......+..+ ..
T Consensus 154 -~a~~lll~g~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~ 230 (259)
T PRK06494 154 -RAMGMILTGRRVT-AREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIRASKQAVYRGLE-VSLEEAITAQRDYP 230 (259)
T ss_pred -HHHHHHHcCCcCC-HHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999875444433 344555554321 1112233333 33
Q ss_pred HHHHHcCCcccHHHHHHHHHhcc
Q 015541 301 QITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 301 ~i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
....+|.+++..|++.++++++.
T Consensus 231 ~~~~~~~~~d~~eg~~af~~kr~ 253 (259)
T PRK06494 231 AVEARRASQDYIEGPKAFAEKRP 253 (259)
T ss_pred HHHHHhcCccHHHHHHHHHccCC
Confidence 46788888888999999999876
No 21
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.4e-48 Score=373.31 Aligned_cols=252 Identities=23% Similarity=0.342 Sum_probs=208.4
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
++.|.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... ...
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~--~~~ 79 (262)
T PRK07468 3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMRAQMT--ADR 79 (262)
T ss_pred cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CcccCCcCHHHHHhhcc--cch
Confidence 455778764468999999999999999999999999999999999999999999997 89999999998754211 111
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (405)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~ 224 (405)
.....++.....++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++.+ +|..
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~ 158 (262)
T PRK07468 80 ATRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEA 158 (262)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHH
Confidence 111223444556788899999999999999999999999999999999999999999999999999999986655 8986
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI 302 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i 302 (405)
++++|++||++++ |+||+++||||+++|.+++.+.+.+++.......|. ..+|++++... .......++.+...+
T Consensus 159 -~a~~lll~g~~~~-a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~-~~~~~~~~~~e~~~~ 235 (262)
T PRK07468 159 -NARRVFMSARLFD-AEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVAAAKALVRALG-APIDEAVIDATIEAL 235 (262)
T ss_pred -HHHHHHHhCCccC-HHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhh-ccChHHHHHHHHHHH
Confidence 9999999999999 999999999999999999988888888875444443 44566665432 122233455566778
Q ss_pred HHHcCCcccHHHHHHHHHhcc
Q 015541 303 TSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 303 ~~~f~~~~~ve~i~~~Le~~~ 323 (405)
..+|.+++..|++.++++++.
T Consensus 236 ~~~~~s~d~~e~~~af~~kr~ 256 (262)
T PRK07468 236 ADTWETEEAREGIAAFFDKRA 256 (262)
T ss_pred HHHhcCHHHHHHHHHHHcCCC
Confidence 899999888999999999887
No 22
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-48 Score=372.65 Aligned_cols=247 Identities=22% Similarity=0.253 Sum_probs=209.6
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
++.|.++. +++|++||||||+++|+||.+|+++|.++++.++.|+++++|||||+|+++||+|+|++++.... ..
T Consensus 7 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~----~~ 81 (262)
T PRK06144 7 TDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFS----TA 81 (262)
T ss_pred CCceEEEe-eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhcc----ch
Confidence 45688887 68999999999999999999999999999999999999999999999878999999999875411 11
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCcccc-ccccCCccHHHHHhcCCCh
Q 015541 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG-IGLFPDVGFSYIAAKGPGG 223 (405)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~-iGl~P~~G~~~~L~r~~G~ 223 (405)
.....+......++..|.++||||||+|||+|+|||++|+++||||||+++++|++||++ +|++|++|++++|++++|.
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~ 161 (262)
T PRK06144 82 EDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGA 161 (262)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCH
Confidence 112234445567788899999999999999999999999999999999999999999996 9999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ 301 (405)
Q Consensus 224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~ 301 (405)
. .+++|++||++++ |+||+++||||++||++++.+.+.++++......|. ..+|..++.... ..+......
T Consensus 162 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~-----~~l~~~~~~ 234 (262)
T PRK06144 162 A-RVKDMLFTARLLE-AEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLRATKEALRRLRR-----EGLPDGDDL 234 (262)
T ss_pred H-HHHHHHHcCCCcC-HHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh-----cCHHHHHHH
Confidence 7 9999999999999 999999999999999999999999998875444433 344555544321 134444556
Q ss_pred HHHHcCCcccHHHHHHHHHhcc
Q 015541 302 ITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 302 i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
+..+|.+++..|++.++++++.
T Consensus 235 ~~~~~~~~~~~e~~~af~~kr~ 256 (262)
T PRK06144 235 IRMCYMSEDFREGVEAFLEKRP 256 (262)
T ss_pred HHHHhcChHHHHHHHHHhcCCC
Confidence 7888998888899999999886
No 23
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.1e-48 Score=373.26 Aligned_cols=251 Identities=22% Similarity=0.294 Sum_probs=210.8
Q ss_pred CCCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541 63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (405)
Q Consensus 63 ~~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~ 142 (405)
..++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+|++++... .
T Consensus 8 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~----~ 81 (266)
T PRK08139 8 TEAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAG-KAFCAGHDLKEMRAA----R 81 (266)
T ss_pred ccCCceEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCC-CcceeccCHHHHhcc----c
Confidence 3466788887 689999999999999999999999999999999999999999999997 899999999987531 1
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541 143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222 (405)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G 222 (405)
.......++....+++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++| +++|+|++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG 160 (266)
T PRK08139 82 GLAYFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVP 160 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhC
Confidence 1122344566667788899999999999999999999999999999999999999999999999999875 568999999
Q ss_pred hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541 223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLP 300 (405)
Q Consensus 223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~ 300 (405)
.. ++++|++||++++ |+||+++||||++||++++.+.+.++++......|. ..+|++++.... ......+..+..
T Consensus 161 ~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~ 237 (266)
T PRK08139 161 RK-QAMEMLLTGEFID-AATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVRIGKEAFYRQAE-MPLADAYAYAGD 237 (266)
T ss_pred HH-HHHHHHHcCCccC-HHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHH
Confidence 97 9999999999999 999999999999999999999999998875444443 345555554322 111234455566
Q ss_pred HHHHHcCCcccHHHHHHHHHhcc
Q 015541 301 QITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 301 ~i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
.+..+|.+++..+++.++++++.
T Consensus 238 ~~~~~~~~~d~~eg~~af~~kr~ 260 (266)
T PRK08139 238 VMAENMMAEDAEEGIDAFLEKRP 260 (266)
T ss_pred HHHHHhcCchHHHHHHHHhcCCC
Confidence 67888888888999999999876
No 24
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=2.5e-48 Score=371.82 Aligned_cols=244 Identities=21% Similarity=0.277 Sum_probs=206.0
Q ss_pred EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (405)
Q Consensus 68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (405)
|.+++ +++|++||||||+++|+||.+|+++|.++++.++.|++||+|||||.| ++||+|+|++++... . ..
T Consensus 4 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~----~---~~ 74 (255)
T PRK09674 4 LLVSR-QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNA-RFFAAGADLNEMAEK----D---LA 74 (255)
T ss_pred EEEEe-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecccChHhHhcc----c---hh
Confidence 66666 689999999999999999999999999999999999999999999997 899999999987531 1 11
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541 148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG 227 (405)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a 227 (405)
..+......++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. ++
T Consensus 75 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~-~a 153 (255)
T PRK09674 75 ATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKS-LA 153 (255)
T ss_pred hhHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHH-HH
Confidence 11222334567789999999999999999999999999999999999999999999999999999999999999986 99
Q ss_pred HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHHH
Q 015541 228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITSC 305 (405)
Q Consensus 228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~ 305 (405)
++|++||++++ |+||+++||||++||++++.+.+.++++......|. ..+|+.++.... ......+..+...+..+
T Consensus 154 ~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~~~~ 231 (255)
T PRK09674 154 SQMVLTGESIT-AQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALRAAKQALRQSQE-VDLQAGLAQERQLFTLL 231 (255)
T ss_pred HHHHHcCCccC-HHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999998885444333 344555544322 12233455566678888
Q ss_pred cCCcccHHHHHHHHHhcc
Q 015541 306 FSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 306 f~~~~~ve~i~~~Le~~~ 323 (405)
+.+++..+++.++++++.
T Consensus 232 ~~~~~~~e~i~af~~kr~ 249 (255)
T PRK09674 232 AATEDRHEGISAFLEKRT 249 (255)
T ss_pred hcCHHHHHHHHHHhccCC
Confidence 998888899999998876
No 25
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-48 Score=372.40 Aligned_cols=251 Identities=22% Similarity=0.311 Sum_probs=207.2
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||+| ++||+|+|++++..... ...
T Consensus 3 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~~~ 78 (262)
T PRK05995 3 YETLEIEQ-RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAG-KAFCAGADLNWMKKMAG--YSD 78 (262)
T ss_pred CceEEEEe-eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CccccCcCHHHHhhhcc--cCc
Confidence 45688876 689999999999999999999999999999999999999999999998 89999999998754211 011
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (405)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~ 224 (405)
......+...++++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++ |++++|..
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg~~ 157 (262)
T PRK05995 79 DENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMGER 157 (262)
T ss_pred hhhhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhCHH
Confidence 11111234456788899999999999999999999999999999999999999999999999999988765 78999987
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcch-hhhhHHH
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAP-LKLLLPQ 301 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~-l~~~~~~ 301 (405)
++++|++||++++ |+||+++||||++||++++.+.+.++++......|. ..+|++++....... ... ++.+...
T Consensus 158 -~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~-~~~~~~~e~~~ 234 (262)
T PRK05995 158 -AARRYFLTAERFD-AAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVRAGKRLVRDVAGRPI-DAALIADTASR 234 (262)
T ss_pred -HHHHHHHcCCccC-HHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCh-hhHHHHHHHHH
Confidence 9999999999999 999999999999999999999999998875444433 445666654322222 223 4445556
Q ss_pred HHHHcCCcccHHHHHHHHHhcc
Q 015541 302 ITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 302 i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
+..++.+++..+++.++++++.
T Consensus 235 ~~~~~~~~d~~e~~~af~~kr~ 256 (262)
T PRK05995 235 IALIRATEEAREGVAAFLEKRK 256 (262)
T ss_pred HHHHhcCHHHHHHHHHHhcCCC
Confidence 7788888878999999999887
No 26
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=3.8e-48 Score=374.36 Aligned_cols=253 Identities=23% Similarity=0.304 Sum_probs=207.4
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+|++++..... ....
T Consensus 7 ~~~i~~~~-~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~-~~~~ 83 (275)
T PRK09120 7 WDTVKVEV-EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLKEYFRETD-AQPE 83 (275)
T ss_pred cccEEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CceecCcCHHHHhhccc-cchh
Confidence 56688887 689999999999999999999999999999999999999999999997 79999999998754211 0111
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (405)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~ 224 (405)
.....+....+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~ 163 (275)
T PRK09120 84 ILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHR 163 (275)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHH
Confidence 11222334456678889999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhH--H
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLL--P 300 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~--~ 300 (405)
++++|++||++++ |+||+++|||+++||++++.+.+.++++......|. ..+|+.++..... .....+..+. .
T Consensus 164 -~a~~llltg~~~~-A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~-~~~~~~~~e~~~~ 240 (275)
T PRK09120 164 -DALYYIMTGETFT-GRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLRAAKDGFKRVREL-TWDQAEDYLYAKL 240 (275)
T ss_pred -HHHHHHhcCCccC-HHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999885544443 3456666543221 1112222222 2
Q ss_pred HHHHHcCCc-ccHHHHHHHHHhcc
Q 015541 301 QITSCFSSE-KSVRQIIEELKKHQ 323 (405)
Q Consensus 301 ~i~~~f~~~-~~ve~i~~~Le~~~ 323 (405)
....+|.++ +..|++.++++++.
T Consensus 241 ~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 241 EQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred HHHHhhCCHHHHHHHHHHHHhccc
Confidence 344568776 68999999999876
No 27
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-48 Score=373.81 Aligned_cols=251 Identities=19% Similarity=0.198 Sum_probs=207.3
Q ss_pred CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (405)
Q Consensus 64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 143 (405)
.++.|.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... ..
T Consensus 9 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---~~ 84 (268)
T PRK07327 9 DYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGGDLALVEEMA---DD 84 (268)
T ss_pred CCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCC-CCcccccCHHHHhhcc---Cc
Confidence 3566888864578999999999999999999999999999999999999999999998 8999999999875421 11
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (405)
Q Consensus 144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~ 223 (405)
......++...+.++..|..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|+.|++++|++++|.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 164 (268)
T PRK07327 85 FEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGM 164 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCH
Confidence 11223345556678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH---HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH---QDIVALLAKYSSDPEGEAPLKLLLP 300 (405)
Q Consensus 224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~---~~i~~~l~~~~~~~~~~~~l~~~~~ 300 (405)
. ++++|+|||++++ |+||+++|||++++|++++.+.+.+++++. +..|. ...|+.++...... ...++....
T Consensus 165 ~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l-a~~~~~a~~~~K~~l~~~~~~~--~~~~~~~~~ 239 (268)
T PRK07327 165 A-KAKYYLLLCEPVS-GEEAERIGLVSLAVDDDELLPKALEVAERL-AAGSQTAIRWTKYALNNWLRMA--GPTFDTSLA 239 (268)
T ss_pred H-HHHHHHHcCCccC-HHHHHHcCCcceecCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhhh--hhhHHHHHH
Confidence 7 9999999999999 999999999999999999999999998874 44444 34455555321111 112322222
Q ss_pred HHHHHcCCcccHHHHHHHHHhcc
Q 015541 301 QITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 301 ~i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
.-..+|.+++..|++.++++++.
T Consensus 240 ~~~~~~~~~d~~eg~~af~ekr~ 262 (268)
T PRK07327 240 LEFMGFSGPDVREGLASLREKRA 262 (268)
T ss_pred HHHHHccChhHHHHHHHHHhcCC
Confidence 22346777778899999999886
No 28
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=3e-48 Score=372.09 Aligned_cols=249 Identities=20% Similarity=0.174 Sum_probs=204.1
Q ss_pred cEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (405)
Q Consensus 67 ~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (405)
.|.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.... .....
T Consensus 3 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~---~~~~~ 79 (259)
T TIGR01929 3 DIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYG---YIDDS 79 (259)
T ss_pred eEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhcc---ccchh
Confidence 366765358999999999999999999999999999999999999999999999878999999999864310 00000
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (405)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~ 226 (405)
.. .......++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. +
T Consensus 80 ~~-~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~-~ 157 (259)
T TIGR01929 80 GV-HRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQK-K 157 (259)
T ss_pred hH-HHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHH-H
Confidence 01 111234567789999999999999999999999999999999999999999999999999999999999999997 9
Q ss_pred HHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHH
Q 015541 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITS 304 (405)
Q Consensus 227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~ 304 (405)
+++|++||++++ |+||+++||||++||++++.+.+.+++++.....|. ..+|.+++..... .......+...+..
T Consensus 158 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~--~~~~~~~e~~~~~~ 234 (259)
T TIGR01929 158 AREIWFLCRQYD-AEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIRMLKAALNADCDG--QAGLQELAGNATML 234 (259)
T ss_pred HHHHHHhCCccC-HHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999998875444333 3456665543221 11222233456778
Q ss_pred HcCCcccHHHHHHHHHhcc
Q 015541 305 CFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 305 ~f~~~~~ve~i~~~Le~~~ 323 (405)
++.+++..|++.++++++.
T Consensus 235 ~~~~~d~~egi~af~~kr~ 253 (259)
T TIGR01929 235 FYMTEEGQEGRNAFLEKRQ 253 (259)
T ss_pred HhcCccHHHHHHHHhccCC
Confidence 8888889999999999887
No 29
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.4e-48 Score=372.80 Aligned_cols=252 Identities=22% Similarity=0.258 Sum_probs=205.3
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
++.|.++.++++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++.... ....
T Consensus 4 ~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~--~~~~ 80 (265)
T PRK05674 4 FQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRG-RHFSAGADLAWMQQSA--DLDY 80 (265)
T ss_pred cceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhcc--cccc
Confidence 677888874478999999999999999999999999999999999999999999997 8999999999875411 0000
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (405)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~ 224 (405)
..........+.++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++ +++++|..
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~-l~~~vG~~ 159 (265)
T PRK05674 81 NTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPF-VVKAIGER 159 (265)
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHH-HHHHhCHH
Confidence 01111233445778889999999999999999999999999999999999999999999999999987764 88899987
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhh-hHHH
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKL-LLPQ 301 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~-~~~~ 301 (405)
++++|+|||+.|+ |+||+++|||+++||.+++.+.+.+++.+.....|. ...|++++....... ...+.. ....
T Consensus 160 -~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~-~~~~~~~~~~~ 236 (265)
T PRK05674 160 -AARRYALTAERFD-GRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALRASKDLLREVGDGEL-SPALRRYCENA 236 (265)
T ss_pred -HHHHHHHhCcccC-HHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhccCh-hHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999998875444333 344555554322211 222322 2345
Q ss_pred HHHHcCCcccHHHHHHHHHhcc
Q 015541 302 ITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 302 i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
+..++.+++..|++.++++++.
T Consensus 237 ~~~~~~s~d~~e~~~af~~kr~ 258 (265)
T PRK05674 237 IARIRVSAEGQEGLRAFLEKRT 258 (265)
T ss_pred HHHHhcCHHHHHHHHHHHccCC
Confidence 6778888878999999999887
No 30
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=3.1e-48 Score=371.59 Aligned_cols=247 Identities=28% Similarity=0.384 Sum_probs=204.8
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
+..+.++. .++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||+| ++||+|+||+++.. . ...
T Consensus 4 ~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g-~~FsaG~Dl~~~~~-~---~~~ 77 (257)
T COG1024 4 YETILVER-EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG-KAFSAGADLKELLS-P---EDG 77 (257)
T ss_pred CCeeEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhc-c---cch
Confidence 34567776 466999999999999999999999999999999999999999999998 99999999999875 1 111
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (405)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~ 224 (405)
.....++...+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|++|..
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~ 157 (257)
T COG1024 78 NAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRG 157 (257)
T ss_pred hHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHH
Confidence 12225777888899999999999999999999999999999999999999999999999999999889999999999997
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCC-CChHHHHHHHHHhhcCCCcHHHH---HHHHHHhcCCCCCcchhhhhHH
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPHQDI---VALLAKYSSDPEGEAPLKLLLP 300 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~i---~~~l~~~~~~~~~~~~l~~~~~ 300 (405)
.+++|++||+.++ |+||+++|||+++|+. +++.+.+.++++.... |+..+ |..+....... ....+..+..
T Consensus 158 -~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~--~~~a~~~~k~~~~~~~~~~-l~~~~~~~~~ 232 (257)
T COG1024 158 -RAKELLLTGEPIS-AAEALELGLVDEVVPDAEELLERALELARRLAA--PPLALAATKRLVRAALEAD-LAEALEAEAL 232 (257)
T ss_pred -HHHHHHHcCCcCC-HHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhhhcc-HHHHHHHHHH
Confidence 9999999999999 9999999999999995 6999999999987543 43334 44443332211 1223333444
Q ss_pred HHHHHcCCcccHHHHHHHHHhcc
Q 015541 301 QITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 301 ~i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
.+...+.+++..|++.++++ ++
T Consensus 233 ~~~~~~~~~d~~eg~~a~~~-r~ 254 (257)
T COG1024 233 AFARLFSSEDFREGVRAFLE-RK 254 (257)
T ss_pred HHHHHhcChhHHHHHHHHHc-cC
Confidence 45556777778888888888 54
No 31
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.8e-48 Score=370.94 Aligned_cols=251 Identities=22% Similarity=0.259 Sum_probs=205.2
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
++.+.++. +++|++||||||+++|++|.+|+++|.++++.++.|++||+|||||.| ++||+|+|++++.... ...
T Consensus 4 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---~~~ 78 (263)
T PRK07799 4 GPHALVEQ-RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAG-GAFCAGMDLKAATKKP---PGD 78 (263)
T ss_pred CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccccCHHHHhhcc---ccc
Confidence 45688886 689999999999999999999999999999999999999999999997 8999999999986421 111
Q ss_pred CchHH-HHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541 145 PLVPK-VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (405)
Q Consensus 145 ~~~~~-~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~ 223 (405)
..... +.......+..+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 158 (263)
T PRK07799 79 SFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPY 158 (263)
T ss_pred hhhhhhhhhhHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCH
Confidence 11111 11111122335789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ 301 (405)
Q Consensus 224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~ 301 (405)
. ++++|++||++++ |+||+++||||++||++++.+.+.++++......|. ..+|+.++..... .....+..+...
T Consensus 159 ~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~-~l~~~~~~e~~~ 235 (263)
T PRK07799 159 T-VACDLLLTGRHIT-AAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQAILRTIRETEGM-HENEAFKIDTKI 235 (263)
T ss_pred H-HHHHHHHcCCCCC-HHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 7 9999999999999 999999999999999999999999998874433332 3445555543211 112345555667
Q ss_pred HHHHcCCcccHHHHHHHHHhcc
Q 015541 302 ITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 302 i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
+..+|.+++..+++-++++++.
T Consensus 236 ~~~~~~~~~~~egi~af~~~r~ 257 (263)
T PRK07799 236 GIPVFLSEDAKEGPRAFAEKRA 257 (263)
T ss_pred HHHHhcCccHHHHHHHHHccCC
Confidence 7888998889999999999886
No 32
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.7e-48 Score=371.37 Aligned_cols=251 Identities=22% Similarity=0.279 Sum_probs=207.3
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
++.|.++. +++|++||||||+++|+||.+|+.+|.+++++++ |+++++|||+|+| ++||+|+|++++.... ....
T Consensus 3 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~--~~~~ 77 (262)
T PRK08140 3 YETILLAI-EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAG-RGFCAGQDLADRDVTP--GGAM 77 (262)
T ss_pred CceEEEEe-ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCC-CCcccCcChHHHhccc--cccc
Confidence 45678886 6899999999999999999999999999999999 9999999999997 8999999999875311 0001
Q ss_pred CchHHHHHH-HHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541 145 PLVPKVFTA-EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (405)
Q Consensus 145 ~~~~~~~~~-~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~ 223 (405)
......+.. ...++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~ 157 (262)
T PRK08140 78 PDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGM 157 (262)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCH
Confidence 111112222 2346778999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ 301 (405)
Q Consensus 224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~ 301 (405)
. ++++|++||++++ |+||+++||||++||++++.+.+.++++......|. ..+|+.++..... .....+..+...
T Consensus 158 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~ 234 (262)
T PRK08140 158 A-RALGLALLGEKLS-AEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLALIKQAMNASATN-TLDAQLDLERDL 234 (262)
T ss_pred H-HHHHHHHcCCCcC-HHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhC-CHHHHHHHHHHH
Confidence 7 9999999999999 999999999999999999999999998875444433 4455555543222 112345555667
Q ss_pred HHHHcCCcccHHHHHHHHHhcc
Q 015541 302 ITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 302 i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
...+|.+++..|++.++++++.
T Consensus 235 ~~~~~~~~~~~e~~~af~~kr~ 256 (262)
T PRK08140 235 QREAGRSADYAEGVSAFLEKRA 256 (262)
T ss_pred HHHHhcChhHHHHHHHHhcCCC
Confidence 7888988888999999999886
No 33
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-48 Score=371.40 Aligned_cols=244 Identities=20% Similarity=0.233 Sum_probs=200.9
Q ss_pred EEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchH
Q 015541 69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP 148 (405)
Q Consensus 69 ~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 148 (405)
.++. +++|++||||||+++|+||.+|+.+|.++++++++|+++|+|||+|.| ++||+|+|++++.... . ....
T Consensus 2 ~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~---~--~~~~ 74 (255)
T PRK06563 2 SRER-RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHG-EHFTAGLDLADVAPKL---A--AGGF 74 (255)
T ss_pred eEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CCCcCCcCHHHHhhcc---c--cchh
Confidence 4555 689999999999999999999999999999999999999999999997 8999999999875421 0 0111
Q ss_pred HHHHHHHHH-HHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541 149 KVFTAEYSL-ICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG 227 (405)
Q Consensus 149 ~~~~~~~~l-~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a 227 (405)
.++....+. ...+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. .+
T Consensus 75 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~a 153 (255)
T PRK06563 75 PFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWG-NA 153 (255)
T ss_pred hhhhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHH-HH
Confidence 122222222 2357899999999999999999999999999999999999999999999999999999999999997 99
Q ss_pred HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHH---HHHHHHhcCCCCCcchhhhhHHHHHH
Q 015541 228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI---VALLAKYSSDPEGEAPLKLLLPQITS 304 (405)
Q Consensus 228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i---~~~l~~~~~~~~~~~~l~~~~~~i~~ 304 (405)
++|++||++++ |+||+++||||++||.+++.+.+.++++.. ...|..++ |+.++.... ......++.+...+..
T Consensus 154 ~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l-a~~~~~a~~~~K~~~~~~~~-~~~~~~~~~e~~~~~~ 230 (255)
T PRK06563 154 MRYLLTGDEFD-AQEALRLGLVQEVVPPGEQLERAIELAERI-ARAAPLGVQATLASARAAVR-EGEAAAAAQLPPELRP 230 (255)
T ss_pred HHHHHcCCCcC-HHHHHHcCCCcEeeCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999998874 44444344 444443211 1112334445566788
Q ss_pred HcCCcccHHHHHHHHHhcc
Q 015541 305 CFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 305 ~f~~~~~ve~i~~~Le~~~ 323 (405)
+|.+++..|++.++++++.
T Consensus 231 ~~~~~d~~eg~~af~~kr~ 249 (255)
T PRK06563 231 LFTSEDAKEGVQAFLERRP 249 (255)
T ss_pred HhcCchHHHHHHHHhcCCC
Confidence 8988888999999999887
No 34
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.4e-48 Score=372.36 Aligned_cols=252 Identities=21% Similarity=0.247 Sum_probs=207.1
Q ss_pred cEEEEEeeCcEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhC-CCC
Q 015541 67 FVKGNVHPNGVAVITLDRPKALNAMNL-DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD-RNT 144 (405)
Q Consensus 67 ~i~~~~~~~~v~~ItLnrp~~~Nal~~-~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~-~~~ 144 (405)
.|.++. +++|++||||||+++|+||. +|+++|.++++.++.|++||+|||+|.| ++||+|+|++++....... ...
T Consensus 4 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 81 (266)
T PRK09245 4 FLLVER-DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAG-TAFSSGGNVKDMRARVGAFGGSP 81 (266)
T ss_pred ceEEEE-ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCHHHHhhccccccccc
Confidence 477776 68999999999999999995 9999999999999999999999999997 8999999999885421100 011
Q ss_pred Cch-HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541 145 PLV-PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (405)
Q Consensus 145 ~~~-~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~ 223 (405)
... ..+......++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~ 161 (266)
T PRK09245 82 ADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGM 161 (266)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhH
Confidence 111 2222334567788999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ 301 (405)
Q Consensus 224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~ 301 (405)
. ++++|++||++++ |+||+++||||++||.+++.+.+.++++......|. ..+|++++..... .....+..+...
T Consensus 162 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~ 238 (266)
T PRK09245 162 A-RAAEMAFTGDAID-AATALEWGLVSRVVPADQLLPAARALAERIAANPPHALRLTKRLLREGQHA-SLDTLLELSAAY 238 (266)
T ss_pred H-HHHHHHHcCCCcC-HHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 6 9999999999999 999999999999999999999999998875444433 3455555543221 112334445566
Q ss_pred HHHHcCCcccHHHHHHHHHhcc
Q 015541 302 ITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 302 i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
+..++.+++..|++.++++++.
T Consensus 239 ~~~~~~~~d~~eg~~af~~kr~ 260 (266)
T PRK09245 239 QALAHHTADHREAVDAFLEKRP 260 (266)
T ss_pred HHHHhcCHhHHHHHHHHHcCCC
Confidence 7888888878999999999886
No 35
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=4.6e-48 Score=370.21 Aligned_cols=247 Identities=21% Similarity=0.271 Sum_probs=204.2
Q ss_pred EEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchH
Q 015541 69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP 148 (405)
Q Consensus 69 ~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 148 (405)
.++. +++|++||||||+++|+||.+|+.+|.++++.+++|+ +|+|||||.| ++||+|+|++++.... ........
T Consensus 2 ~~e~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g-~~F~aG~Dl~~~~~~~--~~~~~~~~ 76 (256)
T TIGR02280 2 LSAL-EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAG-RGFCAGQDLSERNPTP--GGAPDLGR 76 (256)
T ss_pred eEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCC-CCcccCcCHHHHhhcc--ccchhHHH
Confidence 4555 6899999999999999999999999999999999999 9999999997 8999999999875411 01111111
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHH
Q 015541 149 KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGA 228 (405)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~ 228 (405)
.+......++..+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. +++
T Consensus 77 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~-~a~ 155 (256)
T TIGR02280 77 TIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRA-RAM 155 (256)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHH-HHH
Confidence 1222223567789999999999999999999999999999999999999999999999999999999999999997 999
Q ss_pred HHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHHHc
Q 015541 229 YLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITSCF 306 (405)
Q Consensus 229 ~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f 306 (405)
+|++||++++ |+||+++||||++||++++.+.+.++++......|. ..+|+.++..... .....+..+.+....+|
T Consensus 156 ~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~K~~l~~~~~~-~~~~~~~~e~~~~~~~~ 233 (256)
T TIGR02280 156 GLAMLGEKLD-ARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLALTKRAIQAAATN-SLDTQLDLERDLQRELG 233 (256)
T ss_pred HHHHcCCCCC-HHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999998875444443 3455555543221 11234455566788889
Q ss_pred CCcccHHHHHHHHHhcc
Q 015541 307 SSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 307 ~~~~~ve~i~~~Le~~~ 323 (405)
.+++..+++.++++++.
T Consensus 234 ~~~d~~eg~~af~~kr~ 250 (256)
T TIGR02280 234 RSADYAEGVTAFLDKRN 250 (256)
T ss_pred cChhHHHHHHHHHcCCC
Confidence 98889999999999887
No 36
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=5.6e-48 Score=370.54 Aligned_cols=250 Identities=16% Similarity=0.179 Sum_probs=209.9
Q ss_pred CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCC-CCCcccCCChhhHHHhhhhCC
Q 015541 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSG-PRAFCAGMDIKGVVAEIQKDR 142 (405)
Q Consensus 64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g-~~~FcaG~Dl~~~~~~~~~~~ 142 (405)
+++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+ +|+|||||.| +++||+|+|++++... .
T Consensus 2 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~---~- 75 (261)
T PRK11423 2 SMQYVNVVT-INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSG---G- 75 (261)
T ss_pred CccceEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhc---c-
Confidence 355688887 6899999999999999999999999999999999987 9999999974 5899999999987531 1
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541 143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222 (405)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G 222 (405)
. ....+....+.++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|
T Consensus 76 -~-~~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg 153 (261)
T PRK11423 76 -R-DPLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAG 153 (261)
T ss_pred -c-cHHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhH
Confidence 1 11234455567888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcC-CCCCcchhhhhH
Q 015541 223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSS-DPEGEAPLKLLL 299 (405)
Q Consensus 223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~-~~~~~~~l~~~~ 299 (405)
.. ++++|++||++++ |+||+++||||++||++++.+.+.++++......|. ..+|+.++.... .......++.+.
T Consensus 154 ~~-~a~~l~l~g~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~ 231 (261)
T PRK11423 154 FH-IVKEMFFTASPIT-AQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQ 231 (261)
T ss_pred HH-HHHHHHHcCCCcC-HHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHH
Confidence 97 9999999999999 999999999999999999999999998875444443 445666654322 111123344445
Q ss_pred HHHHHHcCCcccHHHHHHHHHhcc
Q 015541 300 PQITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 300 ~~i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
.....+|.+++..|++.++++++.
T Consensus 232 ~~~~~~~~s~d~~eg~~af~~kr~ 255 (261)
T PRK11423 232 GLRRAVYDSEDYQEGMNAFLEKRK 255 (261)
T ss_pred HHHHHHhCChhHHHHHHHHhccCC
Confidence 567788998889999999999887
No 37
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.8e-48 Score=368.43 Aligned_cols=251 Identities=24% Similarity=0.270 Sum_probs=208.9
Q ss_pred ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (405)
Q Consensus 66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 145 (405)
+++.++. +++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... .....
T Consensus 2 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~-~~~~~ 78 (255)
T PRK07260 2 EHIIYEV-EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANG-KVFSVGGDLVEMKRAVD-EDDVQ 78 (255)
T ss_pred CceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccccCHHHHHhhcc-ccchh
Confidence 4577776 689999999999999999999999999999999999999999999997 89999999998864221 11111
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (405)
Q Consensus 146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~ 225 (405)
....+....++++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~- 157 (255)
T PRK07260 79 SLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLN- 157 (255)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHH-
Confidence 1122334456778899999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHH
Q 015541 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (405)
Q Consensus 226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~ 303 (405)
.+++|+|||++++ |+||+++||||++||.+++.+.+.++++......|. ..+|+.++...... ....+..+.....
T Consensus 158 ~a~~l~l~g~~~s-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~-~~~~~~~e~~~~~ 235 (255)
T PRK07260 158 RATHLAMTGEALT-AEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYAAIKSLVWESFFKG-WEDYAKLELALQE 235 (255)
T ss_pred HHHHHHHhCCccC-HHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999998875544443 44555554432211 1234445566778
Q ss_pred HHcCCcccHHHHHHHHHhc
Q 015541 304 SCFSSEKSVRQIIEELKKH 322 (405)
Q Consensus 304 ~~f~~~~~ve~i~~~Le~~ 322 (405)
.++.+++..|++.++++++
T Consensus 236 ~~~~~~~~~e~~~af~~kr 254 (255)
T PRK07260 236 SLAFKEDFKEGVRAFSERR 254 (255)
T ss_pred HHhcCHHHHHHHHHHHhcC
Confidence 8888888899999888875
No 38
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-48 Score=369.78 Aligned_cols=247 Identities=26% Similarity=0.345 Sum_probs=208.4
Q ss_pred cEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (405)
Q Consensus 67 ~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (405)
.+.++. +++|++||||||++ |+||.+|+++|.++++.++.|++||+|||+|.| ++||+|+|++++... .....
T Consensus 3 ~i~~~~-~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~----~~~~~ 75 (257)
T PRK07658 3 FLSVRV-EDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGADIKEFTSV----TEAEQ 75 (257)
T ss_pred eEEEEe-eCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhcc----Cchhh
Confidence 466776 68999999999986 999999999999999999999999999999997 899999999987541 11112
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (405)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~ 226 (405)
...++.....++..|..+|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. +
T Consensus 76 ~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~ 154 (257)
T PRK07658 76 ATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKA-K 154 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHH-H
Confidence 233445556788899999999999999999999999999999999999999999999999999999999999999986 9
Q ss_pred HHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHH
Q 015541 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITS 304 (405)
Q Consensus 227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~ 304 (405)
+++|++||++++ |+||+++||||++||++++.+.+.++++......|. ..+|++++..... .....++.+...+..
T Consensus 155 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~~~~ 232 (257)
T PRK07658 155 ALEMMLTSEPIT-GAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSS-SYYEGVKREAKIFGE 232 (257)
T ss_pred HHHHHHcCCCcC-HHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999998875443333 3445555443221 123445566677888
Q ss_pred HcCCcccHHHHHHHHHhcc
Q 015541 305 CFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 305 ~f~~~~~ve~i~~~Le~~~ 323 (405)
++.+++..+++.++++++.
T Consensus 233 ~~~~~~~~egi~af~~kr~ 251 (257)
T PRK07658 233 VFTSEDAKEGVQAFLEKRK 251 (257)
T ss_pred HhCCHHHHHHHHHHHcCCC
Confidence 9998888999999999876
No 39
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.2e-48 Score=368.94 Aligned_cols=249 Identities=20% Similarity=0.266 Sum_probs=210.4
Q ss_pred EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (405)
Q Consensus 68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (405)
+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++.... .......
T Consensus 5 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~~G~Dl~~~~~~~--~~~~~~~ 80 (260)
T PRK07511 5 LLSRR-EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNRLLENR--AKPPSVQ 80 (260)
T ss_pred eEEEe-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCC-CCcccCcCHHHHhhcc--cccchhH
Confidence 66776 689999999999999999999999999999999999999999999997 8999999999876421 1111233
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541 148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG 227 (405)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a 227 (405)
..++...++++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.. ++
T Consensus 81 ~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~-~a 159 (260)
T PRK07511 81 AASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQ-LA 159 (260)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHH-HH
Confidence 44666777888899999999999999999999999999999999999999999999999999999999999999986 99
Q ss_pred HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCC--CCCcchhhhhHHHHHHH
Q 015541 228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSD--PEGEAPLKLLLPQITSC 305 (405)
Q Consensus 228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~~i~~~ 305 (405)
++|++||++++ |+||+++||||++||++++.+.+.++++.. +..|...+..+++.+... ......+..+...+..+
T Consensus 160 ~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l-~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~ 237 (260)
T PRK07511 160 TELLLEGKPIS-AERLHALGVVNRLAEPGQALAEALALADQL-AAGSPNALARIKSLIADAPEATLAAQLEAERDHFVAS 237 (260)
T ss_pred HHHHHhCCCCC-HHHHHHcCCccEeeCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999988774 444443444333333221 12233455666778889
Q ss_pred cCCcccHHHHHHHHHhcc
Q 015541 306 FSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 306 f~~~~~ve~i~~~Le~~~ 323 (405)
|.+++..+.+.+++++++
T Consensus 238 ~~~~~~~~~i~~f~~~r~ 255 (260)
T PRK07511 238 LHHADALEGIAAFLEKRA 255 (260)
T ss_pred hcCchHHHHHHHHhccCC
Confidence 999888999999999887
No 40
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.3e-48 Score=368.03 Aligned_cols=244 Identities=20% Similarity=0.236 Sum_probs=201.1
Q ss_pred ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (405)
Q Consensus 66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 145 (405)
+.|.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|++||+|||+|.| ++||+|+|++++... . ...
T Consensus 3 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~---~-~~~ 76 (254)
T PRK08252 3 DEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAG-GTFCAGMDLKAFARG---E-RPS 76 (254)
T ss_pred ceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CceEcCcCHHHHhcc---c-chh
Confidence 3477776 689999999999999999999999999999999999999999999997 899999999987641 1 111
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (405)
Q Consensus 146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~ 225 (405)
. +......+. ...+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus 77 ~---~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~- 150 (254)
T PRK08252 77 I---PGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYH- 150 (254)
T ss_pred h---hHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHH-
Confidence 1 111111221 2479999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHH
Q 015541 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (405)
Q Consensus 226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~ 303 (405)
++++|++||++++ |+||+++||||++||++++.+.+.+++.......|. ..+|+.++..... .....++.+...+.
T Consensus 151 ~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~l~~~~~~e~~~~~ 228 (254)
T PRK08252 151 IAMELALTGDMLT-AERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVAASKRIVVESGDW-SEDEMFARQRELIA 228 (254)
T ss_pred HHHHHHHcCCccC-HHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999998875444333 3445555543211 11233445556677
Q ss_pred HHcCCcccHHHHHHHHHhcc
Q 015541 304 SCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 304 ~~f~~~~~ve~i~~~Le~~~ 323 (405)
.++.+++..|++.++++++.
T Consensus 229 ~~~~~~~~~eg~~af~~kr~ 248 (254)
T PRK08252 229 PVFTSADAKEGATAFAEKRA 248 (254)
T ss_pred HHhcCchHHHHHHHHhcCCC
Confidence 88888888999999999876
No 41
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-47 Score=370.87 Aligned_cols=252 Identities=21% Similarity=0.264 Sum_probs=210.1
Q ss_pred ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (405)
Q Consensus 66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 145 (405)
+.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... .....
T Consensus 17 ~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~-~~~~~ 93 (277)
T PRK08258 17 RHFLWEV-DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSGGDVHEIIGPLT-KMDMP 93 (277)
T ss_pred cceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCC-CCcccccCHHHHhcccc-ccChh
Confidence 3678887 689999999999999999999999999999999999999999999997 89999999998753111 11111
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccC-CccHHHHHhcCCChH
Q 015541 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP-DVGFSYIAAKGPGGG 224 (405)
Q Consensus 146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P-~~G~~~~L~r~~G~~ 224 (405)
....+.....+++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++| ++|++++|+|++|..
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~ 173 (277)
T PRK08258 94 ELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQG 173 (277)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHH
Confidence 2233444456788899999999999999999999999999999999999999999999999995 889999999999997
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI 302 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i 302 (405)
.+++|+|||++++ |+||+++||||++||.+++.+.+.+++.......|. ..+|++++.... ......+..+...+
T Consensus 174 -~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~l~~~~~~e~~~~ 250 (277)
T PRK08258 174 -RASELLYTGRSMS-AEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHGMTKTMLHQEWD-MGLEEAIEAEAQAQ 250 (277)
T ss_pred -HHHHHHHcCCCCC-HHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc-CCHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999998874443333 334555544211 11233455566678
Q ss_pred HHHcCCcccHHHHHHHHHhcc
Q 015541 303 TSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 303 ~~~f~~~~~ve~i~~~Le~~~ 323 (405)
..+|.+++..|++.++++++.
T Consensus 251 ~~~~~s~d~~eg~~af~ekr~ 271 (277)
T PRK08258 251 AICMQTEDFRRAYEAFVAKRK 271 (277)
T ss_pred HHHhcCchHHHHHHHHhcCCC
Confidence 899999888999999999987
No 42
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=1e-47 Score=371.46 Aligned_cols=247 Identities=21% Similarity=0.320 Sum_probs=203.5
Q ss_pred eeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC--CC----Cc
Q 015541 73 HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR--NT----PL 146 (405)
Q Consensus 73 ~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~--~~----~~ 146 (405)
.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++........ .. ..
T Consensus 14 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 92 (275)
T PLN02664 14 PNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAG-DHFCSGIDLKTLNSISEQSSSGDRGRSGER 92 (275)
T ss_pred CCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CceeeCcChHHhhhcccccccccchhhHHH
Confidence 3689999999999999999999999999999999999999999999997 89999999998754211000 00 11
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (405)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~ 226 (405)
...++....+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 93 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~ 171 (275)
T PLN02664 93 LRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYG-N 171 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHH-H
Confidence 222334445677889999999999999999999999999999999999999999999999999999999999999997 9
Q ss_pred HHHHHhcCCCCCcHHHHHHcCccceecCC-CChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHH
Q 015541 227 GAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (405)
Q Consensus 227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~ 303 (405)
+++|+|||++++ |+||+++||||++||+ +++.+.+.++++......|. ..+|+.++.... ......++.+...+.
T Consensus 172 A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~~ 249 (275)
T PLN02664 172 AMELALTGRRFS-GSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVLLRSRE-LSVEQGLDYVATWNS 249 (275)
T ss_pred HHHHHHhCCCCC-HHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 999999999999 9999999999999995 88888888888775444443 345555554322 112233444555677
Q ss_pred HHcCCcccHHHHHHHHHhcc
Q 015541 304 SCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 304 ~~f~~~~~ve~i~~~Le~~~ 323 (405)
.+|.+++..|++.++++++.
T Consensus 250 ~~~~~~d~~eg~~af~ekr~ 269 (275)
T PLN02664 250 AMLVSDDLNEAVSAQIQKRK 269 (275)
T ss_pred HhccChhHHHHHHHHhccCC
Confidence 78888889999999999887
No 43
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=1.4e-47 Score=367.94 Aligned_cols=246 Identities=22% Similarity=0.351 Sum_probs=203.5
Q ss_pred cEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (405)
Q Consensus 67 ~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (405)
.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|++||+|||||.|+++||+|+|++++.... . .
T Consensus 4 ~i~~~~-~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~---~--~- 75 (261)
T PRK03580 4 SLHTTR-NGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGE---A--P- 75 (261)
T ss_pred eEEEEE-ECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccC---c--c-
Confidence 477776 6899999999996 599999999999999999999999999999999878999999999875411 1 0
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (405)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~ 226 (405)
...+....+.++..+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. +
T Consensus 76 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~-~ 154 (261)
T PRK03580 76 DADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPA-I 154 (261)
T ss_pred hhhhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHH-H
Confidence 112222234566789999999999999999999999999999999999999999999999999999999999999997 9
Q ss_pred HHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhH----H
Q 015541 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLL----P 300 (405)
Q Consensus 227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~----~ 300 (405)
++++++||++++ |+||+++|||+++||++++.+.+.+++.......|. ..+|++++....... ...+..+. .
T Consensus 155 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~-~~~~~~e~~~~~~ 232 (261)
T PRK03580 155 ANEMVMTGRRMD-AEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIAALKEIYRETSEMPV-EEAYRYIRSGVLK 232 (261)
T ss_pred HHHHHHhCCccC-HHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHhhhHH
Confidence 999999999999 999999999999999999999999998875444443 345555554322111 12222222 3
Q ss_pred HHHHHcCCcccHHHHHHHHHhcc
Q 015541 301 QITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 301 ~i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
.+..+|.+++..|++.++++++.
T Consensus 233 ~~~~~~~~~d~~e~~~af~ekr~ 255 (261)
T PRK03580 233 HYPSVLHSEDALEGPRAFAEKRD 255 (261)
T ss_pred HHHHHhcCccHHHHHHHHhcCCC
Confidence 56778988888999999999887
No 44
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-47 Score=369.27 Aligned_cols=255 Identities=22% Similarity=0.279 Sum_probs=210.3
Q ss_pred CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC-ceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPR-VKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (405)
Q Consensus 64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~-v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~ 142 (405)
.++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++ +|+|||||.| ++||+|+|++++........
T Consensus 2 ~~~~v~~~~-~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 79 (266)
T PRK05981 2 QFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGRGSGGRESD 79 (266)
T ss_pred CcceEEEEe-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcccccCHHhhhccccccc
Confidence 466788887 68999999999999999999999999999999998764 9999999997 79999999998754210000
Q ss_pred -CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCC
Q 015541 143 -NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP 221 (405)
Q Consensus 143 -~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~ 221 (405)
.......+....+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~v 159 (266)
T PRK05981 80 SGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLV 159 (266)
T ss_pred ccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHh
Confidence 0011223334456788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhH
Q 015541 222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLL 299 (405)
Q Consensus 222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~ 299 (405)
|.. .+++|++||++++ |+||+++|||+++||++++.+.+.++++......|. ..+|+++..... ......+..+.
T Consensus 160 g~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~-~~~~~~~~~e~ 236 (266)
T PRK05981 160 GKA-RAMELSLLGEKLP-AETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALGLIRKLYWDSPE-NDFEEQLNLER 236 (266)
T ss_pred HHH-HHHHHHHhCCCcC-HHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-cCHHHHHHHHH
Confidence 986 9999999999999 999999999999999999999999998875444332 344555544321 11123445556
Q ss_pred HHHHHHcCCcccHHHHHHHHHhcc
Q 015541 300 PQITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 300 ~~i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
.....+|.+++..|++.++++++.
T Consensus 237 ~~~~~~~~s~d~~e~~~af~~kr~ 260 (266)
T PRK05981 237 EAQRIAGKTEDFKEGVGAFLQKRP 260 (266)
T ss_pred HHHHHHhcChhHHHHHHHHhcCCC
Confidence 667888999889999999999887
No 45
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-47 Score=374.14 Aligned_cols=255 Identities=22% Similarity=0.277 Sum_probs=206.7
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhC---
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD--- 141 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~--- 141 (405)
++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 3 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (296)
T PRK08260 3 YETIRYDV-ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG-RAFCAGADLSAGGNTFDLDAPR 80 (296)
T ss_pred cceEEEee-eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CCeecCcChHHhhhcccccccc
Confidence 45578876 689999999999999999999999999999999999999999999997 8999999999875311000
Q ss_pred ---------CCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCcc
Q 015541 142 ---------RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVG 212 (405)
Q Consensus 142 ---------~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G 212 (405)
........+......++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g 160 (296)
T PRK08260 81 TPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAA 160 (296)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcc
Confidence 00001122333334577889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH---HHHHHHHHHhcCCC
Q 015541 213 FSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH---QDIVALLAKYSSDP 289 (405)
Q Consensus 213 ~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~---~~i~~~l~~~~~~~ 289 (405)
++++|+|++|.. ++++|+|||++++ |+||+++||||++||.+++.+.+.+++.......|. ..+|++++......
T Consensus 161 ~~~~l~r~vG~~-~A~~llltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~~~K~~l~~~~~~~ 238 (296)
T PRK08260 161 SSWFLPRLVGLQ-TALEWVYSGRVFD-AQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVALTRQMMWRMAGAD 238 (296)
T ss_pred hhhhHHHhhCHH-HHHHHHHcCCccC-HHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccCC
Confidence 999999999997 9999999999999 999999999999999999999999998875443243 34455554431111
Q ss_pred CCcchhhhhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541 290 EGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 290 ~~~~~l~~~~~~i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
........+...+..++.+++..|++.++++++.
T Consensus 239 ~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~ 272 (296)
T PRK08260 239 HPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRP 272 (296)
T ss_pred CcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCC
Confidence 1112223344557788888878999999998886
No 46
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-47 Score=366.49 Aligned_cols=246 Identities=25% Similarity=0.316 Sum_probs=208.6
Q ss_pred ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (405)
Q Consensus 66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 145 (405)
+.|.++. +++|++||||||+++|++|.+|+.+|.++++.+ .|+++|+|||+|.| ++||+|+|++++... ....
T Consensus 6 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~----~~~~ 78 (260)
T PRK07659 6 ESVVVKY-EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNG-RGFSAGGDIKMMLSS----NDES 78 (260)
T ss_pred ceEEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCC-CCcccccCHHHHhhc----cCch
Confidence 4578876 689999999999999999999999999999999 58899999999997 899999999987541 1112
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (405)
Q Consensus 146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~ 225 (405)
....++...++++..+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~- 157 (260)
T PRK07659 79 KFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGEN- 157 (260)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHH-
Confidence 3345666677888899999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHH---HHHHHHHhcCCCCCcchhhhhHHHH
Q 015541 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD---IVALLAKYSSDPEGEAPLKLLLPQI 302 (405)
Q Consensus 226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~l~~~~~~i 302 (405)
.+++|++||+.++ |+||+++||||++| ++++.+.+.++++.. ...|..+ +|++++...... ....+..+....
T Consensus 158 ~a~~l~ltg~~~~-a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l-~~~~~~a~~~~K~~l~~~~~~~-l~~~~~~e~~~~ 233 (260)
T PRK07659 158 KAKQIIWEGKKLS-ATEALDLGLIDEVI-GGDFQTAAKQKISEW-LQKPLKAMIETKQIYCELNRSQ-LEQVLQLEKRAQ 233 (260)
T ss_pred HHHHHHHhCCccC-HHHHHHcCChHHHh-hhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhhcCC-HHHHHHHHHHHH
Confidence 9999999999999 99999999999999 788999999998875 4445434 455554432211 123444555667
Q ss_pred HHHcCCcccHHHHHHHHHhcc
Q 015541 303 TSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 303 ~~~f~~~~~ve~i~~~Le~~~ 323 (405)
..+|.+++..|+|.++++++.
T Consensus 234 ~~~~~~~~~~egi~af~~kr~ 254 (260)
T PRK07659 234 YAMRQTADHKEGIRAFLEKRL 254 (260)
T ss_pred HHHhcCHhHHHHHHHHhcCCC
Confidence 788888889999999999987
No 47
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=2.6e-47 Score=368.22 Aligned_cols=250 Identities=19% Similarity=0.176 Sum_probs=205.1
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.|+++||+|+|++++.... ....
T Consensus 12 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~--~~~~ 88 (273)
T PRK07396 12 YEDILYKS-ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGG--YVDD 88 (273)
T ss_pred CcceEEEe-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhccc--ccch
Confidence 45688876 68999999999999999999999999999999999999999999999867999999999864210 0000
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (405)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~ 224 (405)
.... .+ ..+.++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus 89 ~~~~-~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~ 166 (273)
T PRK07396 89 DGVP-RL-NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQK 166 (273)
T ss_pred hhhh-hh-HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHH
Confidence 0111 11 123566789999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI 302 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i 302 (405)
.+++|++||+.++ |+||+++||||++||++++.+.+.+++.......|. ..+|++++.... ........+....
T Consensus 167 -~a~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~--~~~~~~~~e~~~~ 242 (273)
T PRK07396 167 -KAREIWFLCRQYD-AQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCD--GQAGLQELAGNAT 242 (273)
T ss_pred -HHHHHHHhCCCcC-HHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc--cHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999885544443 445555554311 1111122334456
Q ss_pred HHHcCCcccHHHHHHHHHhcc
Q 015541 303 TSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 303 ~~~f~~~~~ve~i~~~Le~~~ 323 (405)
..++.+++..|++.++++++.
T Consensus 243 ~~~~~~~d~~egi~af~~kr~ 263 (273)
T PRK07396 243 MLFYMTEEAQEGRNAFNEKRQ 263 (273)
T ss_pred HHHhcChhHHHHHHHHhCCCC
Confidence 678888878999999999886
No 48
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-47 Score=369.13 Aligned_cols=255 Identities=22% Similarity=0.266 Sum_probs=207.8
Q ss_pred CCccEEEEEeeC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541 64 AEEFVKGNVHPN-GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (405)
Q Consensus 64 ~~~~i~~~~~~~-~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~ 142 (405)
.++.|.++. ++ +|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++........
T Consensus 3 ~~~~i~~~~-~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06210 3 AYDAVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG-RGFCAGADMGELQTIDPSDG 80 (272)
T ss_pred CcceEEEEE-CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCcccccCHHHHhccCcccc
Confidence 456788887 56 9999999999999999999999999999999999999999999997 79999999998754210000
Q ss_pred C-CCchHHHH----HHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHH
Q 015541 143 N-TPLVPKVF----TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIA 217 (405)
Q Consensus 143 ~-~~~~~~~~----~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L 217 (405)
. ......+. ....+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l 160 (272)
T PRK06210 81 RRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWIL 160 (272)
T ss_pred cccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhh
Confidence 0 00001111 122345678999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH---HHHHHHHHHhcCCCCCcch
Q 015541 218 AKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH---QDIVALLAKYSSDPEGEAP 294 (405)
Q Consensus 218 ~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~---~~i~~~l~~~~~~~~~~~~ 294 (405)
+|++|.. .+++|+|||++++ |++|+++||||++||++++.+.+.+++.......++ ..+|+.++..... .....
T Consensus 161 ~~~ig~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~~~~K~~l~~~~~~-~l~~~ 237 (272)
T PRK06210 161 PRLVGHA-NALDLLLSARTFY-AEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASMAVIKRQLYEDAFQ-TLAEA 237 (272)
T ss_pred HhhhCHH-HHHHHHHcCCccC-HHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccC-CHHHH
Confidence 9999987 9999999999999 999999999999999999999999998875443243 3445555443211 11234
Q ss_pred hhhhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541 295 LKLLLPQITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 295 l~~~~~~i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
++.+...+..+|.+++..|++.++++++.
T Consensus 238 ~~~e~~~~~~~~~~~~~~egi~af~~kr~ 266 (272)
T PRK06210 238 TARANREMHESLQRPDFIEGVASFLEKRP 266 (272)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHhccCC
Confidence 55555667888888888999999999887
No 49
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-47 Score=363.21 Aligned_cols=243 Identities=20% Similarity=0.235 Sum_probs=201.0
Q ss_pred cEEEEEeeC--cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 67 FVKGNVHPN--GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 67 ~i~~~~~~~--~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
.|.++..++ +|++||||||+++|+||.+|+++|.++++.+++|+++|+|||+|.| ++||+|+|++++.... ..
T Consensus 4 ~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~---~~- 78 (251)
T PRK06023 4 HILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTE-GCFSAGNDMQDFLAAA---MG- 78 (251)
T ss_pred eEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcCHHHHhhcc---cc-
Confidence 477776322 5999999999999999999999999999999999999999999997 7999999999875411 01
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (405)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~ 224 (405)
...+....++++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..
T Consensus 79 --~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~ 156 (251)
T PRK06023 79 --GTSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQ 156 (251)
T ss_pred --chhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHH
Confidence 112333445677889999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHH---HHHHHHHhcCCCCCcchhhhhHHH
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD---IVALLAKYSSDPEGEAPLKLLLPQ 301 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~l~~~~~~ 301 (405)
+++++++||+.++ |+||+++|||+++||.+++.+.+.+++++. ...|+.+ .|++++... . .....+..+...
T Consensus 157 -~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l-~~~~~~a~~~~K~~l~~~~-~-~l~~~~~~e~~~ 231 (251)
T PRK06023 157 -RAFALLALGEGFS-AEAAQEAGLIWKIVDEEAVEAETLKAAEEL-AAKPPQALQIARDLMRGPR-E-DILARIDEEAKH 231 (251)
T ss_pred -HHHHHHHhCCCCC-HHHHHHcCCcceeeCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhch-h-hHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999998875 4444434 455554321 1 112234444556
Q ss_pred HHHHcCCcccHHHHHHHHHh
Q 015541 302 ITSCFSSEKSVRQIIEELKK 321 (405)
Q Consensus 302 i~~~f~~~~~ve~i~~~Le~ 321 (405)
...+|.+++..|++.+++++
T Consensus 232 ~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 232 FAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred HHHHhCCHHHHHHHHHHhcC
Confidence 77788888778888877763
No 50
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=6.5e-47 Score=363.87 Aligned_cols=250 Identities=20% Similarity=0.300 Sum_probs=205.5
Q ss_pred CCCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541 63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (405)
Q Consensus 63 ~~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~ 142 (405)
.+++.|.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... ..
T Consensus 6 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~--~~ 82 (265)
T PLN02888 6 VSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSG-RAFCSGVDLTAAEEVF--KG 82 (265)
T ss_pred CCCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CcccCCCCHHHHHhhc--cc
Confidence 34567888765689999999999999999999999999999999999999999999997 8999999999865311 01
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541 143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222 (405)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G 222 (405)
... ....+++..|..+|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|
T Consensus 83 ---~~~---~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG 156 (265)
T PLN02888 83 ---DVK---DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIG 156 (265)
T ss_pred ---hhh---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhC
Confidence 111 11235666789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541 223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLP 300 (405)
Q Consensus 223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~ 300 (405)
.. ++++|+|||++++ |+||+++||||++||.+++.+.+.++++......|. ..+|++++..... .....+..+..
T Consensus 157 ~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~ 233 (265)
T PLN02888 157 AN-RAREVSLTAMPLT-AETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVLRYKSVINDGLKL-DLGHALQLEKE 233 (265)
T ss_pred HH-HHHHHHHhCCccC-HHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 97 9999999999999 999999999999999999999999999875444443 4456666543221 11233444444
Q ss_pred HHHHHc--CCcccHHHHHHHHHhccC
Q 015541 301 QITSCF--SSEKSVRQIIEELKKHQS 324 (405)
Q Consensus 301 ~i~~~f--~~~~~ve~i~~~Le~~~~ 324 (405)
....++ .+++..|++.++++++..
T Consensus 234 ~~~~~~~~~~~d~~e~~~af~ekr~~ 259 (265)
T PLN02888 234 RAHDYYNGMTKEQFQKMQEFIAGRSS 259 (265)
T ss_pred HHHHHhccCCHHHHHHHHHHHhcCCC
Confidence 556664 466688999999998874
No 51
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-47 Score=369.17 Aligned_cols=255 Identities=20% Similarity=0.256 Sum_probs=202.2
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC--
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR-- 142 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~-- 142 (405)
.+.|.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++......+.
T Consensus 8 ~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~~~~ 86 (276)
T PRK05864 8 MSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADHKSAGVVPHVEGLT 86 (276)
T ss_pred CCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcchhhhhccccccccc
Confidence 455777754689999999999999999999999999999999999999999999997 89999999998743110000
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccC-CccHHHHHhcCC
Q 015541 143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP-DVGFSYIAAKGP 221 (405)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P-~~G~~~~L~r~~ 221 (405)
.......++.....++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|+|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~v 166 (276)
T PRK05864 87 RPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAI 166 (276)
T ss_pred chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhh
Confidence 0111112344455677889999999999999999999999999999999999999999999999997 789999999999
Q ss_pred ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHH---HHHHHHhcCCCCCcchhhhh
Q 015541 222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI---VALLAKYSSDPEGEAPLKLL 298 (405)
Q Consensus 222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i---~~~l~~~~~~~~~~~~l~~~ 298 (405)
|.. .+++|+|||++++ |+||+++|||+++||++++.+.+.+++.+.. ..|+.++ |+.++...........+..+
T Consensus 167 G~~-~A~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la-~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e 243 (276)
T PRK05864 167 GSS-RAFEIMLTGRDVD-AEEAERIGLVSRQVPDEQLLDTCYAIAARMA-GFSRPGIELTKRTLWSGLDAASLEAHMQAE 243 (276)
T ss_pred CHH-HHHHHHHcCCccC-HHHHHHcCCcceeeCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 987 9999999999999 9999999999999999999999999988754 4444344 55554321110111222222
Q ss_pred HH-HHHHHcCCcccHHHHHHHHHhcc
Q 015541 299 LP-QITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 299 ~~-~i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
.. ....+|.+++..|++.++++++.
T Consensus 244 ~~~~~~~~~~~~d~~e~~~af~~kr~ 269 (276)
T PRK05864 244 GLGQLFVRLLTANFEEAVAARAEKRP 269 (276)
T ss_pred HHHHHHHhccChhHHHHHHHHhccCC
Confidence 21 12235677778999999999886
No 52
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-47 Score=362.81 Aligned_cols=244 Identities=21% Similarity=0.297 Sum_probs=203.5
Q ss_pred cEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (405)
Q Consensus 67 ~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (405)
.|.++. +++|++||||||+++|+||.+|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++.... . ..
T Consensus 4 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~---~--~~ 76 (249)
T PRK05870 4 PVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAG-KAFCAGADLTALGAAP---G--RP 76 (249)
T ss_pred cEEEEc-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCeecCcChHHHhccc---c--cc
Confidence 467776 689999999999999999999999999999999999999999999997 8999999999876421 1 11
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (405)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~ 226 (405)
...++...+.++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. .
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~-~ 155 (249)
T PRK05870 77 AEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQ-V 155 (249)
T ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHH-H
Confidence 233455566778889999999999999999999999999999999999999999999999999999999999999987 9
Q ss_pred HHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHH
Q 015541 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITS 304 (405)
Q Consensus 227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~ 304 (405)
+++|++||++++ |+||+++||||++| +++.+.+.+++++.....|. ..+|+.++...........+..+......
T Consensus 156 a~~l~ltg~~~~-a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~ 232 (249)
T PRK05870 156 ARAALLFGMRFD-AEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAA 232 (249)
T ss_pred HHHHHHhCCccC-HHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999 67888999998875444443 34455554432101122344555667788
Q ss_pred HcCCcccHHHHHHHHHh
Q 015541 305 CFSSEKSVRQIIEELKK 321 (405)
Q Consensus 305 ~f~~~~~ve~i~~~Le~ 321 (405)
+|.+++..|++.+++++
T Consensus 233 ~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 233 SVQSPEFAARLAAAQRR 249 (249)
T ss_pred HhcChhHHHHHHHHhcC
Confidence 89888788888887763
No 53
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.6e-47 Score=362.76 Aligned_cols=246 Identities=23% Similarity=0.314 Sum_probs=209.2
Q ss_pred ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (405)
Q Consensus 66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 145 (405)
..|.++. +++|++|+||||++.|+||.+|+++|.++++.++.|+++++|||+|.| ++||+|+|++++.... . .
T Consensus 5 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~---~--~ 77 (259)
T PRK06688 5 TDLLVEL-EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAG-RAFSAGGDIKDFPKAP---P--K 77 (259)
T ss_pred CceEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCccCHHHHhccC---c--c
Confidence 3477776 689999999999999999999999999999999999999999999997 8999999999876421 1 1
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (405)
Q Consensus 146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~ 225 (405)
. ..++...++++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus 78 ~-~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~- 155 (259)
T PRK06688 78 P-PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRA- 155 (259)
T ss_pred h-HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHH-
Confidence 1 33556667788899999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHH---HHHHHHHhcCCCCCcchhhhhHHHH
Q 015541 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD---IVALLAKYSSDPEGEAPLKLLLPQI 302 (405)
Q Consensus 226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~l~~~~~~i 302 (405)
.+++|++||++++ |+||+++||||+++|++++.+.+.++++.. ...|..+ .|+.++.-.. ......+..+...+
T Consensus 156 ~a~~l~l~g~~~~-a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i-~~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~ 232 (259)
T PRK06688 156 RAAEMLLLGEPLS-AEEALRIGLVNRVVPAAELDAEADAQAAKL-AAGPASALRYTKRAINAATL-TELEEALAREAAGF 232 (259)
T ss_pred HHHHHHHhCCccC-HHHHHHcCCcceecCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhhh-CCHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999998874 4444433 4555543221 12234455566677
Q ss_pred HHHcCCcccHHHHHHHHHhcc
Q 015541 303 TSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 303 ~~~f~~~~~ve~i~~~Le~~~ 323 (405)
.++|.+++..+.+-++++++.
T Consensus 233 ~~~~~~~~~~~~~~af~~~~~ 253 (259)
T PRK06688 233 GRLLRTPDFREGATAFIEKRK 253 (259)
T ss_pred HHHhCCHHHHHHHHHHHcCCC
Confidence 888998878888888888876
No 54
>PLN02921 naphthoate synthase
Probab=100.00 E-value=9e-47 Score=371.77 Aligned_cols=252 Identities=18% Similarity=0.174 Sum_probs=207.2
Q ss_pred CCccEEEEEe-eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541 64 AEEFVKGNVH-PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (405)
Q Consensus 64 ~~~~i~~~~~-~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~ 142 (405)
.++.|.++.. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++.... ..
T Consensus 63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~--~~ 140 (327)
T PLN02921 63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDG--YV 140 (327)
T ss_pred CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhccc--cc
Confidence 4567888763 58999999999999999999999999999999999999999999999878999999999764310 00
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541 143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222 (405)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G 222 (405)
.......+ ....++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 141 ~~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG 218 (327)
T PLN02921 141 GPDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVG 218 (327)
T ss_pred chhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhC
Confidence 00011111 1235677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541 223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLP 300 (405)
Q Consensus 223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~ 300 (405)
.. .+++|++||+.++ |+||+++||||++||.+++.+.+.+++.+.....|. ..+|++++..... ..........
T Consensus 219 ~~-~A~ellltG~~~~-A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~~~K~~l~~~~~~--~~~~~~~~~~ 294 (327)
T PLN02921 219 QK-KAREMWFLARFYT-ASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIRVLKSALNAADDG--HAGLQELGGN 294 (327)
T ss_pred HH-HHHHHHHcCCcCC-HHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc--hhHHHHHHHH
Confidence 97 9999999999999 999999999999999999999999999885444443 4456666543221 1122222335
Q ss_pred HHHHHcCCcccHHHHHHHHHhcc
Q 015541 301 QITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 301 ~i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
....+|.+++..|++.++++++.
T Consensus 295 ~~~~~~~s~d~~egi~Af~ekr~ 317 (327)
T PLN02921 295 ATLLFYGSEEGNEGRTAYLEGRA 317 (327)
T ss_pred HHHHHhcCHHHHHHHHHHhccCC
Confidence 56778888889999999999987
No 55
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.4e-47 Score=362.65 Aligned_cols=250 Identities=22% Similarity=0.267 Sum_probs=203.8
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
++.+.+++ +++|++||||||+++|+||.+|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++.... ....
T Consensus 2 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~--~~~~ 77 (262)
T PRK07509 2 MDRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEG-GAFCAGLDVKSVASSP--GNAV 77 (262)
T ss_pred CceEEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCcCCCcCHHHHhccc--chhh
Confidence 45688887 699999999999999999999999999999999999999999999997 8999999999876421 0000
Q ss_pred CchHH----HHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcC
Q 015541 145 PLVPK----VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG 220 (405)
Q Consensus 145 ~~~~~----~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~ 220 (405)
..... .......++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 157 (262)
T PRK07509 78 KLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGL 157 (262)
T ss_pred hhHhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHH
Confidence 01111 11222345667889999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhh
Q 015541 221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLL 298 (405)
Q Consensus 221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~ 298 (405)
+|.. ++++|+|||++++ |+||+++||||++|+. +.+.+.++++......|. ..+|+.++...... ....+..+
T Consensus 158 ~g~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~--~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~-~~~~~~~e 232 (262)
T PRK07509 158 VRKD-VARELTYTARVFS-AEEALELGLVTHVSDD--PLAAALALAREIAQRSPDAIAAAKRLINRSWTAS-VRALLARE 232 (262)
T ss_pred hCHH-HHHHHHHcCCCcC-HHHHHHcCChhhhhch--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC-HHHHHHHH
Confidence 9986 9999999999999 9999999999999953 667788887774443333 45566665542221 12334455
Q ss_pred HHHHHHHcCCcccHHHHHHHHHhcc
Q 015541 299 LPQITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 299 ~~~i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
......+|.+++..+++.++++++.
T Consensus 233 ~~~~~~~~~~~d~~e~~~af~ekr~ 257 (262)
T PRK07509 233 SVEQIRLLLGKNQKIAVKAQMKKRA 257 (262)
T ss_pred HHHHHHHhcChhHHHHHHHHhcCCC
Confidence 5667888888889999999999886
No 56
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-46 Score=358.91 Aligned_cols=245 Identities=18% Similarity=0.170 Sum_probs=197.2
Q ss_pred ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (405)
Q Consensus 66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 145 (405)
+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.... . .
T Consensus 3 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g-~~FcaG~Dl~~~~~~~---~--~ 75 (254)
T PRK08259 3 MSVRVER-NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAG-GTFCAGADLKAVGTGR---G--N 75 (254)
T ss_pred ceEEEEE-ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcChHHHhccc---c--h
Confidence 3477776 689999999999999999999999999999999999999999999997 8999999999875411 1 0
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (405)
Q Consensus 146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~ 225 (405)
..... ....+...+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|+.|++|++++|+|++|..
T Consensus 76 ~~~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~- 152 (254)
T PRK08259 76 RLHPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHS- 152 (254)
T ss_pred hhhhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHH-
Confidence 01000 001112233479999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHH
Q 015541 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (405)
Q Consensus 226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~ 303 (405)
.+++|++||++++ |+||+++||||++||.+++.+.+.++++......|. ...|++++.... ......+..+.....
T Consensus 153 ~a~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~-~~~~~~~~~e~~~~~ 230 (254)
T PRK08259 153 RAMDLILTGRPVD-ADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLRADRLSALEQWG-LPEEAALANEFAHGL 230 (254)
T ss_pred HHHHHHHcCCccC-HHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999875444443 334555544221 111223344444455
Q ss_pred HHcCCcccHHHHHHHHHhcc
Q 015541 304 SCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 304 ~~f~~~~~ve~i~~~Le~~~ 323 (405)
.+|. ++..|++.+++++..
T Consensus 231 ~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 231 AVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred HHHh-hHHHHHHHHHHhhhc
Confidence 6676 668999999998764
No 57
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=2.2e-46 Score=362.36 Aligned_cols=253 Identities=19% Similarity=0.230 Sum_probs=205.7
Q ss_pred CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCC-CCcccCCChhhHHHhhhhCC
Q 015541 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP-RAFCAGMDIKGVVAEIQKDR 142 (405)
Q Consensus 64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~-~~FcaG~Dl~~~~~~~~~~~ 142 (405)
..+.|.++..+++|++||||||+ .|+||.+|+.+|.++++.+++|+++|+|||||.|+ ++||+|+|++++... ..
T Consensus 9 ~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~---~~ 84 (278)
T PLN03214 9 ATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAP---KT 84 (278)
T ss_pred CCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhcc---cc
Confidence 35568888645899999999986 69999999999999999999999999999999973 699999999987531 11
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccc-cCCccHHHHHhcCC
Q 015541 143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGL-FPDVGFSYIAAKGP 221 (405)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl-~P~~G~~~~L~r~~ 221 (405)
.......++.....++..|..+||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~ 164 (278)
T PLN03214 85 SAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVI 164 (278)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhc
Confidence 11112234444456778899999999999999999999999999999999999999999999999 59999999999999
Q ss_pred ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhH
Q 015541 222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLL 299 (405)
Q Consensus 222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~ 299 (405)
|.. ++++|+|||++++ |+||+++||||++||.+++.+.+.+++.......|. ..+|..++..... .....++.+.
T Consensus 165 G~~-~a~~llltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~l~~~~~~e~ 241 (278)
T PLN03214 165 DRK-VAESLLLRGRLVR-PAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARAATKALLREEFSA-AWEAYYEEEA 241 (278)
T ss_pred CHH-HHHHHHHcCCccC-HHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHH-HHHHHHHHHH
Confidence 997 9999999999999 999999999999999999999999998875444443 3345555432111 1122344455
Q ss_pred HHHHHHcCCcccHHHHHHHHHhcc
Q 015541 300 PQITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 300 ~~i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
.....++.+++..|++.+++++..
T Consensus 242 ~~~~~~~~s~d~~egi~aflek~~ 265 (278)
T PLN03214 242 KGGWKMLSEPSIIKALGGVMERLS 265 (278)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHh
Confidence 567778888878888888887754
No 58
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-46 Score=357.02 Aligned_cols=233 Identities=24% Similarity=0.309 Sum_probs=193.6
Q ss_pred CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (405)
Q Consensus 64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 143 (405)
.++.|.++. +++|++||||||+++|+||.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++....
T Consensus 2 ~~~~v~~~~-~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~----- 74 (258)
T PRK06190 2 TEPILLVET-HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGAD-PAFCAGLDLKELGGDG----- 74 (258)
T ss_pred CCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhccc-----
Confidence 356788887 689999999999999999999999999999999999999999999997 8999999999875411
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (405)
Q Consensus 144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~ 223 (405)
... .. ....+.++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.
T Consensus 75 ~~~-~~-~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 152 (258)
T PRK06190 75 SAY-GA-QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGI 152 (258)
T ss_pred chh-hH-HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCH
Confidence 111 11 2234567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ 301 (405)
Q Consensus 224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~ 301 (405)
. .+++|++||++++ |+||+++||||+++|++++.+.+.++++......|. ..+|++++.... ......++.+...
T Consensus 153 ~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~l~~~~~~e~~~ 229 (258)
T PRK06190 153 G-RARRMSLTGDFLD-AADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRALKASYDDGAA-AQTGDALALEAEA 229 (258)
T ss_pred H-HHHHHHHhCCccC-HHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc-CCHHHHHHHHHHH
Confidence 7 9999999999999 999999999999999999999999998875444332 334555544321 1112334445555
Q ss_pred HHHHcCC
Q 015541 302 ITSCFSS 308 (405)
Q Consensus 302 i~~~f~~ 308 (405)
+..+|.+
T Consensus 230 ~~~~~~s 236 (258)
T PRK06190 230 ARAHNRS 236 (258)
T ss_pred HHHHHcC
Confidence 6666665
No 59
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-46 Score=359.07 Aligned_cols=247 Identities=22% Similarity=0.301 Sum_probs=204.1
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
++.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.... ...
T Consensus 3 ~~~i~~~~-~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~---~~~ 76 (257)
T PRK06495 3 MSQLKLEV-SDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGADLKGRPDVI---KGP 76 (257)
T ss_pred cceEEEEe-eCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCcccCcCHHhHhhcc---CCc
Confidence 45677876 6899999999998 5999999999999999999999999999999997 8999999999875411 111
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (405)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~ 224 (405)
.....+....+++...+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++++|+|++|..
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~ 153 (257)
T PRK06495 77 GDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHS 153 (257)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHH
Confidence 1223344455677888999999999999999999999999999999999999999999999996 5678899999987
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI 302 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i 302 (405)
++++|++||++++ |+||+++||||++||++++.+.+.+++.......|. ..+|+.++..... .....+..+....
T Consensus 154 -~a~~lll~g~~~~-a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~l~~~~~~e~~~~ 230 (257)
T PRK06495 154 -LTRRMMLTGYRVP-AAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATRLAKDALNTIENM-SLRDGYRYEQDIT 230 (257)
T ss_pred -HHHHHHHcCCeeC-HHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999998885444433 3445555443221 1123344455567
Q ss_pred HHHcCCcccHHHHHHHHHhcc
Q 015541 303 TSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 303 ~~~f~~~~~ve~i~~~Le~~~ 323 (405)
..++.+++..|++-++++++.
T Consensus 231 ~~~~~s~d~~egi~af~~kr~ 251 (257)
T PRK06495 231 AKLAKTEDAKEAQRAFLEKRP 251 (257)
T ss_pred HHHhcChHHHHHHHHHhccCC
Confidence 778888878999999999887
No 60
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.1e-46 Score=354.64 Aligned_cols=243 Identities=18% Similarity=0.199 Sum_probs=199.3
Q ss_pred EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (405)
Q Consensus 68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (405)
|..+..+++|++||||||++ |+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+|++++... ......
T Consensus 3 ~~~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~----~~~~~~ 76 (249)
T PRK07938 3 ITSTTPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNAGVDIKELQAT----PGFTAL 76 (249)
T ss_pred eeecccCCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCC-CceecCcCHHHHhhc----cchhHH
Confidence 33444578999999999985 999999999999999999999999999999997 899999999987531 111111
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541 148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG 227 (405)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a 227 (405)
..+......++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|+|++|.. .+
T Consensus 77 ~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~-~a 152 (249)
T PRK07938 77 IDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQH-LM 152 (249)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHH-HH
Confidence 2223344567788999999999999999999999999999999999999999999999985 6678899999987 99
Q ss_pred HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHH---HHHHHHHhcCCCCCcchhhhhHHHHHH
Q 015541 228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD---IVALLAKYSSDPEGEAPLKLLLPQITS 304 (405)
Q Consensus 228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~l~~~~~~i~~ 304 (405)
++|++||++++ |+||+++|||+++||++++.+.+.+++.... ..|... +|+.++.... ......+..+......
T Consensus 153 ~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la-~~~~~a~~~~K~~l~~~~~-~~l~~~~~~e~~~~~~ 229 (249)
T PRK07938 153 RALFFTAATIT-AAELHHFGSVEEVVPRDQLDEAALEVARKIA-AKDTRVIRAAKEALNGIDP-QDVERSYRWEQGFTFE 229 (249)
T ss_pred HHHHHhCCcCC-HHHHHHCCCccEEeCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhhcc-CCHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999998754 444434 4555544321 1112334555566778
Q ss_pred HcCCcccHHHHHHHHHhcc
Q 015541 305 CFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 305 ~f~~~~~ve~i~~~Le~~~ 323 (405)
+|.+++..|++.+++++++
T Consensus 230 ~~~~~d~~eg~~af~ekr~ 248 (249)
T PRK07938 230 LNLAGVSDEHRDAFVEKRK 248 (249)
T ss_pred HhcCccHHHHHHHHHhcCC
Confidence 8888888999999998875
No 61
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.1e-46 Score=354.04 Aligned_cols=236 Identities=17% Similarity=0.251 Sum_probs=193.7
Q ss_pred EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (405)
Q Consensus 68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (405)
|.++. +++|++||||||+++|+||.+|+.+|.++++.++.| ++|+|||||.| ++||+|+|+++... .
T Consensus 2 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g-~~F~aG~Dl~~~~~----------~ 68 (243)
T PRK07854 2 IGVTR-DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQG-TVFCAGADLSGDVY----------A 68 (243)
T ss_pred ceEEE-eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCC-CceecccCCccchh----------H
Confidence 45666 689999999999999999999999999999999865 89999999997 89999999985211 1
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541 148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG 227 (405)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a 227 (405)
..+....+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. .+
T Consensus 69 ~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~-~a 147 (243)
T PRK07854 69 DDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGG-RA 147 (243)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHH-HH
Confidence 22444556778889999999999999999999999999999999999999999999999999999999999999987 99
Q ss_pred HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHcC
Q 015541 228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS 307 (405)
Q Consensus 228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f~ 307 (405)
++|++||++++ |+||+++|||+++++.+ .+.++++.. ...|...+...++.+.........+..+......+|.
T Consensus 148 ~~l~ltg~~~~-a~eA~~~Glv~~v~~~~----~a~~~a~~l-~~~~~~a~~~~K~~l~~~~~~~~~~~~e~~~~~~~~~ 221 (243)
T PRK07854 148 RAMLLGAEKLT-AEQALATGMANRIGTLA----DAQAWAAEI-AGLAPLALQHAKRVLNDDGAIEEAWPAHKELFDKAWA 221 (243)
T ss_pred HHHHHcCCCcC-HHHHHHCCCcccccCHH----HHHHHHHHH-HhCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhc
Confidence 99999999999 99999999999997632 566666653 3344434433333332222222334445567788898
Q ss_pred CcccHHHHHHHHHhcc
Q 015541 308 SEKSVRQIIEELKKHQ 323 (405)
Q Consensus 308 ~~~~ve~i~~~Le~~~ 323 (405)
+++..|++.++++++.
T Consensus 222 ~~d~~eg~~af~~kr~ 237 (243)
T PRK07854 222 SQDAIEAQVARIEKRP 237 (243)
T ss_pred CchHHHHHHHHhCCCC
Confidence 8888999999999886
No 62
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.4e-46 Score=353.36 Aligned_cols=239 Identities=24% Similarity=0.295 Sum_probs=199.0
Q ss_pred EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (405)
Q Consensus 68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (405)
|.++. +++|++||||||+++|+||.+|+++|.++++.++.|++||+|||+|.| ++||+|+|++++.... .
T Consensus 2 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~--------~ 71 (248)
T PRK06072 2 IKVES-REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEFAPDF--------A 71 (248)
T ss_pred eEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhhh--------H
Confidence 55665 689999999999999999999999999999999999999999999997 8999999999875411 1
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541 148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG 227 (405)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a 227 (405)
..+....+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| .++
T Consensus 72 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g--~~a 149 (248)
T PRK06072 72 IDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTG--QRF 149 (248)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhh--HHH
Confidence 223344566778899999999999999999999999999999999999999999999999999999999999999 379
Q ss_pred HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHHH
Q 015541 228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITSC 305 (405)
Q Consensus 228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~ 305 (405)
+++++||++++ |+||+++||||++ +++.+.+.+++.+.....|. ..+|++++..... .....++.+......+
T Consensus 150 ~~lll~g~~~~-a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~l~~~~~~e~~~~~~~ 224 (248)
T PRK06072 150 YEILVLGGEFT-AEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYIAAKRMINLVLYN-DLEEFLEYESAIQGYL 224 (248)
T ss_pred HHHHHhCCccC-HHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999953 35677788888775443332 3445565543211 1123445556677889
Q ss_pred cCCcccHHHHHHHHHhcc
Q 015541 306 FSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 306 f~~~~~ve~i~~~Le~~~ 323 (405)
|.+++..|++.++++++.
T Consensus 225 ~~~~d~~eg~~af~~kr~ 242 (248)
T PRK06072 225 GKTEDFKEGISSFKEKRE 242 (248)
T ss_pred hCChhHHHHHHHHhcCCC
Confidence 999888999999999887
No 63
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7e-46 Score=355.90 Aligned_cols=248 Identities=23% Similarity=0.270 Sum_probs=203.1
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
+..+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++.... ....
T Consensus 5 ~~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~--~~~~ 80 (260)
T PRK07827 5 DTLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTG-GTFCAGADLSEAGGGG--GDPY 80 (260)
T ss_pred CcceEEEe-eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCcChHHHhhcc--cCch
Confidence 34577776 689999999999999999999999999999999999999999999997 8999999999875410 0111
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (405)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~ 224 (405)
.....++....+++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++++|+.| .
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~-~ 159 (260)
T PRK07827 81 DAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSP-R 159 (260)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhH-H
Confidence 112345566677888999999999999999999999999999999999999999999999999999999999999865 3
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH---HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH---QDIVALLAKYSSDPEGEAPLKLLLPQ 301 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~---~~i~~~l~~~~~~~~~~~~l~~~~~~ 301 (405)
.+++|++||++++ |++|+++|||+++++ ++.+.+.+++++. +..|. ..+|.+++..... .....++.+...
T Consensus 160 -~a~~l~l~g~~~~-a~eA~~~Glv~~v~~--~l~~~a~~~a~~l-a~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~ 233 (260)
T PRK07827 160 -AAARYYLTGEKFG-AAEAARIGLVTAAAD--DVDAAVAALLADL-RRGSPQGLAESKALTTAAVLA-GFDRDAEELTEE 233 (260)
T ss_pred -HHHHHHHhCCccC-HHHHHHcCCcccchH--HHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhhcC-CHHHHHHHHHHH
Confidence 8999999999999 999999999999974 4888888888774 44444 3445555442111 112234445556
Q ss_pred HHHHcCCcccHHHHHHHHHhcc
Q 015541 302 ITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 302 i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
...+|.+++..+++.++++++.
T Consensus 234 ~~~~~~~~~~~~~~~af~~kr~ 255 (260)
T PRK07827 234 SARLFVSDEAREGMTAFLQKRP 255 (260)
T ss_pred HHHHhcChhHHHHHHHHhcCCC
Confidence 7788888878899989998876
No 64
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=8.6e-47 Score=359.02 Aligned_cols=242 Identities=30% Similarity=0.451 Sum_probs=210.2
Q ss_pred EEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHH
Q 015541 70 GNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPK 149 (405)
Q Consensus 70 ~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 149 (405)
|+. +++|++|+||||++.|+||.+|+++|.++|+.++.|+++++||++|.| ++||+|+|++++... .......
T Consensus 2 ~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~-~~F~~G~Dl~~~~~~-----~~~~~~~ 74 (245)
T PF00378_consen 2 YEI-EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGG-KAFCAGADLKEFLNS-----DEEEARE 74 (245)
T ss_dssp EEE-ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEEST-SESBESB-HHHHHHH-----HHHHHHH
T ss_pred EEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecc-cccccccchhhhhcc-----ccccccc
Confidence 555 699999999999999999999999999999999999999999998875 899999999999874 2234566
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHH
Q 015541 150 VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY 229 (405)
Q Consensus 150 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~ 229 (405)
+....+.++..+..+|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. .+++
T Consensus 75 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-~a~~ 153 (245)
T PF00378_consen 75 FFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPS-RARE 153 (245)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHH-HHHH
T ss_pred cchhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecc-cccc
Confidence 788889999999999999999999999999999999999999999999999999999999999999999999986 9999
Q ss_pred HHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHHHcC
Q 015541 230 LGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITSCFS 307 (405)
Q Consensus 230 l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f~ 307 (405)
+++||++++ |+||+++||||+++|++++.+.+.++++......|. ..+|+.+++... ......+......+.+++.
T Consensus 154 l~l~g~~~~-a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 231 (245)
T PF00378_consen 154 LLLTGEPIS-AEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALRATKKALNRALE-QSLEEALEFEQDLFAECFK 231 (245)
T ss_dssp HHHHTCEEE-HHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHT
T ss_pred cccccccch-hHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHcC
Confidence 999999999 999999999999999999999999999885444333 445555555311 1112345556678999999
Q ss_pred CcccHHHHHHHHHh
Q 015541 308 SEKSVRQIIEELKK 321 (405)
Q Consensus 308 ~~~~ve~i~~~Le~ 321 (405)
+++..|++.+++||
T Consensus 232 ~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 232 SEDFQEGIAAFLEK 245 (245)
T ss_dssp SHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCc
Confidence 99889999998875
No 65
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.4e-45 Score=351.66 Aligned_cols=238 Identities=17% Similarity=0.212 Sum_probs=198.2
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
+..+.++. +++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++.... ..
T Consensus 4 ~~~~~~~~-~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~---~~- 77 (249)
T PRK07110 4 KVVELREV-EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP-NYFATGGTQEGLLSLQ---TG- 77 (249)
T ss_pred CceEEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCcChHHHhhcc---ch-
Confidence 45577776 689999999999999999999999999999999999999999999997 8999999999875411 11
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (405)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~ 224 (405)
...+.. ..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 78 ---~~~~~~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~ 153 (249)
T PRK07110 78 ---KGTFTE-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLA 153 (249)
T ss_pred ---hhhHhh-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHH
Confidence 112222 5678889999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHH---HHHHHHHhcCCCCCcchhhhhHHH
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD---IVALLAKYSSDPEGEAPLKLLLPQ 301 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~l~~~~~~ 301 (405)
.+++|++||++++ |+||+++|||+++||++++.+.+.++++.. +..|... +|+.++..... .....++.+...
T Consensus 154 -~a~~llltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l-a~~~~~a~~~~K~~l~~~~~~-~l~~~~~~e~~~ 229 (249)
T PRK07110 154 -LGQEMLLTARYYR-GAELKKRGVPFPVLPRAEVLEKALELARSL-AEKPRHSLVLLKDHLVADRRR-RLPEVIEQEVAM 229 (249)
T ss_pred -HHHHHHHcCCccC-HHHHHHcCCCeEEeChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhhhc-cHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999998874 4444434 45555443222 223345556666
Q ss_pred HHHHcCCcccHHHHH
Q 015541 302 ITSCFSSEKSVRQII 316 (405)
Q Consensus 302 i~~~f~~~~~ve~i~ 316 (405)
+..+|.+++..|++.
T Consensus 230 ~~~~~~~~~~~egi~ 244 (249)
T PRK07110 230 HEKTFHQPEVKRRIE 244 (249)
T ss_pred HHHHhCCHhHHHHHH
Confidence 778888875555443
No 66
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=1.3e-45 Score=352.25 Aligned_cols=239 Identities=16% Similarity=0.213 Sum_probs=192.7
Q ss_pred EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (405)
Q Consensus 68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (405)
|.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.. ...
T Consensus 3 v~~~~-~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g-~~FcaG~Dl~~~~~--------~~~ 71 (251)
T TIGR03189 3 VWLER-DGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEG-PHFSFGASVAEHMP--------DQC 71 (251)
T ss_pred EEEEe-eCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCC-CceecCcChhhhCc--------hhH
Confidence 55665 5899999999997 5999999999999999999999999999999997 79999999997531 111
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541 148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG 227 (405)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a 227 (405)
..++....+++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|+ |++++|+|++|.. .+
T Consensus 72 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~-~a 149 (251)
T TIGR03189 72 AAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRV-AA 149 (251)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHH-HH
Confidence 234555567888999999999999999999999999999999999999999999999999997 5678999999997 99
Q ss_pred HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHH---HHHHHHhcCCCCCcchh-hhhHHHHH
Q 015541 228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI---VALLAKYSSDPEGEAPL-KLLLPQIT 303 (405)
Q Consensus 228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i---~~~l~~~~~~~~~~~~l-~~~~~~i~ 303 (405)
++|+|||++++ |+||+++|||++++|+.+ +.+.+++...+...|+.++ |++++....... ...+ ..+...+.
T Consensus 150 ~~l~ltg~~~~-a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~~~K~~l~~~~~~~~-~~~~~~~e~~~~~ 225 (251)
T TIGR03189 150 EDLLYSGRSID-GAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLRFAVRAARLGMNERV-KAKIAEVEALYLE 225 (251)
T ss_pred HHHHHcCCCCC-HHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcccH-HHHHHHHHHHHHH
Confidence 99999999999 999999999999998543 3444543223445454344 455543321111 1122 23445577
Q ss_pred HHcCCcccHHHHHHHHHhcc
Q 015541 304 SCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 304 ~~f~~~~~ve~i~~~Le~~~ 323 (405)
.+|.+++..|++.++++++.
T Consensus 226 ~~~~s~d~~eg~~af~ekr~ 245 (251)
T TIGR03189 226 ELMATHDAVEGLNAFLEKRP 245 (251)
T ss_pred HHhCCHhHHHHHHHHHhcCC
Confidence 88988888999999999987
No 67
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=1.4e-45 Score=360.88 Aligned_cols=255 Identities=17% Similarity=0.140 Sum_probs=203.4
Q ss_pred CccEEEEEe-eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCC------CCcccCCChhhHHHh
Q 015541 65 EEFVKGNVH-PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP------RAFCAGMDIKGVVAE 137 (405)
Q Consensus 65 ~~~i~~~~~-~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~------~~FcaG~Dl~~~~~~ 137 (405)
+..|.++.. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+ ++||+|+|++++...
T Consensus 22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 334777752 4789999999999999999999999999999999999999999999974 699999999976321
Q ss_pred hh--hCCCC-C--chHHH-HHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEe-CCeeeeCccccccccCC
Q 015541 138 IQ--KDRNT-P--LVPKV-FTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-EKTLLAMPENGIGLFPD 210 (405)
Q Consensus 138 ~~--~~~~~-~--~~~~~-~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riat-e~a~f~~PE~~iGl~P~ 210 (405)
.. ..... . ....+ ....+.+...+..+||||||+|||+|+|||++|+++||||||+ ++++|++||+++|++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~ 181 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG 181 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence 00 00000 0 00011 1112346667899999999999999999999999999999999 69999999999999999
Q ss_pred ccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCC
Q 015541 211 VGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSD 288 (405)
Q Consensus 211 ~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~ 288 (405)
+|++++|+|++|.. .+++|+|||+.++ |+||+++|||+++||++++.+.+.++++......|. ..+|++++.....
T Consensus 182 ~~~~~~L~r~vG~~-~A~~l~ltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~ 259 (302)
T PRK08321 182 GYGSAYLARQVGQK-FAREIFFLGRTYS-AEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRMLKYAFNLTDDG 259 (302)
T ss_pred chHHHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc
Confidence 99999999999986 9999999999999 999999999999999999999999999885444433 3445555443221
Q ss_pred CCCcchhhhhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541 289 PEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 289 ~~~~~~l~~~~~~i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
.......+......+|.+++..+++.++++++.
T Consensus 260 --~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~ 292 (302)
T PRK08321 260 --LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRD 292 (302)
T ss_pred --cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCC
Confidence 112222345567788888888999999999886
No 68
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-45 Score=360.54 Aligned_cols=256 Identities=17% Similarity=0.156 Sum_probs=200.1
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHh----hhh
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAE----IQK 140 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~----~~~ 140 (405)
++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||+| ++||+|+||++.... ...
T Consensus 4 ~~~v~~~~-~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G-~~FcaG~Dl~~~~~~~~~~~~~ 81 (298)
T PRK12478 4 FQTLLYTT-AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG-RAFSGGYDFGGGFQHWGEAMMT 81 (298)
T ss_pred ceEEEEec-cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCccccccccchhccc
Confidence 45677876 689999999999999999999999999999999999999999999997 899999999862210 000
Q ss_pred CCCCCchHHH---HHHH---HHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccc-cccCCccH
Q 015541 141 DRNTPLVPKV---FTAE---YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI-GLFPDVGF 213 (405)
Q Consensus 141 ~~~~~~~~~~---~~~~---~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~i-Gl~P~~G~ 213 (405)
.........+ .... ..++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++| |+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~ 159 (298)
T PRK12478 82 DGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TG 159 (298)
T ss_pred ccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hh
Confidence 0000111111 1111 234567899999999999999999999999999999999999999999997 8885 34
Q ss_pred HHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCC
Q 015541 214 SYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEG 291 (405)
Q Consensus 214 ~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~ 291 (405)
++ + +.+|.. ++++|+|||++|+ |+||+++||||++||++++.+.+.+++.+.....|. ...|.+++........
T Consensus 160 ~~-~-~~vG~~-~A~~llltg~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~l 235 (298)
T PRK12478 160 MW-L-YRLSLA-KVKWHSLTGRPLT-GVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQAQKLIVNQAYENMGL 235 (298)
T ss_pred HH-H-HHhhHH-HHHHHHHcCCccC-HHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcch
Confidence 44 2 458986 9999999999999 999999999999999999999999999885444333 3456666543221212
Q ss_pred cchhhhhHHHHHHHcCCcccH--------HHHHHHHHhccCCccchhhHHHH
Q 015541 292 EAPLKLLLPQITSCFSSEKSV--------RQIIEELKKHQSSAETSVAQWAD 335 (405)
Q Consensus 292 ~~~l~~~~~~i~~~f~~~~~v--------e~i~~~Le~~~~~~~~~~~~wa~ 335 (405)
...+..+......++.+++.. |++-++++|+. ++|..
T Consensus 236 ~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~-------p~f~~ 280 (298)
T PRK12478 236 ASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRD-------GPFGD 280 (298)
T ss_pred hHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcC-------Ccccc
Confidence 345566666788888888665 59999999997 66754
No 69
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.6e-45 Score=343.94 Aligned_cols=208 Identities=19% Similarity=0.252 Sum_probs=179.7
Q ss_pred CccEEEEEe----eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhh
Q 015541 65 EEFVKGNVH----PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQK 140 (405)
Q Consensus 65 ~~~i~~~~~----~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~ 140 (405)
+++|.++.. +++|++||||||++ |+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++....
T Consensus 2 ~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~-- 77 (222)
T PRK05869 2 NEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGH-EIFSAGDDMPELRTLS-- 77 (222)
T ss_pred ccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcCcCcCHHHHhccC--
Confidence 344555542 58999999999986 999999999999999999999999999999987 8999999999875411
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcC
Q 015541 141 DRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG 220 (405)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~ 220 (405)
......++....+++.+|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|+
T Consensus 78 ---~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 154 (222)
T PRK05869 78 ---AQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRA 154 (222)
T ss_pred ---hhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHH
Confidence 11122334445678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHH
Q 015541 221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL 282 (405)
Q Consensus 221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l 282 (405)
+|.. .++++++||++++ |+||+++||||+++|++++.+.+.++++.... .|..++..++
T Consensus 155 ig~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~-~~~~a~~~~K 213 (222)
T PRK05869 155 AGPS-RAKELVFSGRFFD-AEEALALGLIDEMVAPDDVYDAAAAWARRFLD-GPPHALAAAK 213 (222)
T ss_pred hCHH-HHHHHHHcCCCcC-HHHHHHCCCCCEeeCchHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 9986 9999999999999 99999999999999999999999999987544 4443443333
No 70
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.2e-44 Score=346.36 Aligned_cols=245 Identities=18% Similarity=0.200 Sum_probs=196.7
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 144 (405)
++.+.++. +++|++||||||++.|+||.+|+.+|.++++.++ +++|+|||+|.| ++||+|+|++++.... ...
T Consensus 3 ~~~i~~~~-~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g-~~FsaG~Dl~~~~~~~---~~~ 75 (255)
T PRK07112 3 YQTIRVRQ-QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLP-EVFCFGADFSAIAEKP---DAG 75 (255)
T ss_pred CceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCC-CCcccCcCHHHHhhcc---ccc
Confidence 45688887 6899999999999999999999999999999998 369999999997 8999999999875411 111
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (405)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~ 224 (405)
..........+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++| +.+|++++|..
T Consensus 76 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~ 154 (255)
T PRK07112 76 RADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQ 154 (255)
T ss_pred hhhhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHH
Confidence 11111233445778889999999999999999999999999999999999999999999999999875 46799999997
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI 302 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i 302 (405)
++++|++||++++ |+||+++||||++||+++. .+.+++++.....|. ..+|..++.... .....++.+....
T Consensus 155 -~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~~~K~~~~~~~~--~~~~~~~~e~~~~ 228 (255)
T PRK07112 155 -KAHYMTLMTQPVT-AQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVARYKSYASTLDD--TVAAARPAALAAN 228 (255)
T ss_pred -HHHHHHHhCCccc-HHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHhhh--hHHHHHHHHHHHH
Confidence 9999999999999 9999999999999997553 456666553333332 445666654311 1223445555667
Q ss_pred HHHcCCcccHHHHHHHHHhcc
Q 015541 303 TSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 303 ~~~f~~~~~ve~i~~~Le~~~ 323 (405)
..+|.+++..|++.++++++.
T Consensus 229 ~~~~~~~~~~eg~~af~~kr~ 249 (255)
T PRK07112 229 IEMFADPENLRKIARYVETGK 249 (255)
T ss_pred HHHHcChHHHHHHHHHHcCCC
Confidence 788888888999999999886
No 71
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2e-43 Score=342.19 Aligned_cols=238 Identities=13% Similarity=0.112 Sum_probs=186.4
Q ss_pred CccEEEEE-eeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEeeCCCCCcccCCChhhHHHhh
Q 015541 65 EEFVKGNV-HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWES-----DPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138 (405)
Q Consensus 65 ~~~i~~~~-~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~-----d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~ 138 (405)
+..++++. .+++|++|||| |+++|+||.+|+.+|.+++++++. |++||+|||+|.|++.||+|+|++++....
T Consensus 14 ~~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~ 92 (287)
T PRK08788 14 LSQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELI 92 (287)
T ss_pred cCceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhc
Confidence 44555544 36789999996 999999999999999999999998 899999999999558999999999875311
Q ss_pred hhCCCCCchHHHHHHHHHHHHHHH---hCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHH
Q 015541 139 QKDRNTPLVPKVFTAEYSLICKIS---EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY 215 (405)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~i~---~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~ 215 (405)
..........+....+..+..+. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus 93 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~ 171 (287)
T PRK08788 93 -RAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYS 171 (287)
T ss_pred -cccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHH
Confidence 01111111122233333334343 79999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCC-CcHHHHHHHHHHhcCCCCCcch
Q 015541 216 IAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSE-DPHQDIVALLAKYSSDPEGEAP 294 (405)
Q Consensus 216 ~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~ 294 (405)
+|+|++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.+++.+.... .+...++..++...... ....
T Consensus 172 ~l~~~vG~~-~A~ellltG~~l~-A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~~~~~~a~k~~~~~~~~~~-~~~~ 248 (287)
T PRK08788 172 FLARRVGPK-LAEELILSGKLYT-AEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRKLNGWRAMLRARRRVNPLS-LEEL 248 (287)
T ss_pred HHHHHhhHH-HHHHHHHcCCCCC-HHHHHHCCCCcEecCchHHHHHHHHHHHHHhcCccHHHHHHHHHHhhccCC-HHHH
Confidence 999999997 9999999999999 999999999999999999999999999885443 23356777766553321 1223
Q ss_pred hhhhHHHHHHHcC
Q 015541 295 LKLLLPQITSCFS 307 (405)
Q Consensus 295 l~~~~~~i~~~f~ 307 (405)
+..+....+.++.
T Consensus 249 ~~~~~~~~~~~~~ 261 (287)
T PRK08788 249 MDITEIWVDAALQ 261 (287)
T ss_pred HHHHHHHHHHHhh
Confidence 3334344554443
No 72
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-43 Score=342.94 Aligned_cols=214 Identities=21% Similarity=0.288 Sum_probs=177.4
Q ss_pred CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC-
Q 015541 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR- 142 (405)
Q Consensus 64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~- 142 (405)
+++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........
T Consensus 2 ~~~~v~~~~-~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G-~~FcaG~Dl~~~~~~~~~~~~ 79 (288)
T PRK08290 2 EYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAG-KHFSAGHDLGSGTPGRDRDPG 79 (288)
T ss_pred CCceEEEEe-eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CccccCCCccccccccccccc
Confidence 356688887 689999999999999999999999999999999999999999999997 89999999998642110000
Q ss_pred -------------CCC---chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCcccccc
Q 015541 143 -------------NTP---LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIG 206 (405)
Q Consensus 143 -------------~~~---~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iG 206 (405)
... ...........++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lG 159 (288)
T PRK08290 80 PDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMG 159 (288)
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccC
Confidence 000 0111122334566789999999999999999999999999999999999999999999999
Q ss_pred ccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHH---HHHHHH
Q 015541 207 LFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD---IVALLA 283 (405)
Q Consensus 207 l~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~---i~~~l~ 283 (405)
+ |+ ++++++++++|.. .+++|+|||+.++ |+||+++||||++||++++.+.+.+++... ...|... +|..++
T Consensus 160 l-~~-~~~~~l~~~iG~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~a~~l-a~~~~~a~~~~K~~~~ 234 (288)
T PRK08290 160 I-PG-VEYFAHPWELGPR-KAKELLFTGDRLT-ADEAHRLGMVNRVVPRDELEAETLELARRI-AAMPPFGLRLTKRAVN 234 (288)
T ss_pred c-Cc-chHHHHHHHhhHH-HHHHHHHcCCCCC-HHHHHHCCCccEeeCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence 8 54 4577789999987 9999999999999 999999999999999999999999999875 4444434 455554
Q ss_pred H
Q 015541 284 K 284 (405)
Q Consensus 284 ~ 284 (405)
.
T Consensus 235 ~ 235 (288)
T PRK08290 235 Q 235 (288)
T ss_pred H
Confidence 3
No 73
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=8.2e-44 Score=318.56 Aligned_cols=248 Identities=18% Similarity=0.263 Sum_probs=207.8
Q ss_pred ccEEEEE---eeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541 66 EFVKGNV---HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (405)
Q Consensus 66 ~~i~~~~---~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~ 142 (405)
..|.++. .+.||.+|-+|||.+.|+|+..|+++|.++++++..|+.+|+|+|++.-++.||+|+|+|+-.. .
T Consensus 27 ~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~-----M 101 (291)
T KOG1679|consen 27 NEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKT-----M 101 (291)
T ss_pred ceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhc-----C
Confidence 3466654 4468999999999999999999999999999999999999999999998999999999999776 4
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541 143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222 (405)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G 222 (405)
++.++..|......++..|.++|.|+||+|+|.++|||++++++||+|||+++++|+++|++++++|+.|+|++|+|++|
T Consensus 102 s~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg 181 (291)
T KOG1679|consen 102 SPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVG 181 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHh
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCC----ChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCCCcchhhhh
Q 015541 223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG----NLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLL 298 (405)
Q Consensus 223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~----~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 298 (405)
.. ++++|++||+.++ +.||...|||+|+|... .....+.+++++.+.+.|. +++-.+...+...+ ..+...
T Consensus 182 ~a-laKELIftarvl~-g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPi-avr~aKlAIn~G~e--vdiasg 256 (291)
T KOG1679|consen 182 VA-LAKELIFTARVLN-GAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPI-AVRLAKLAINLGME--VDIASG 256 (291)
T ss_pred HH-HHHhHhhhheecc-chhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCch-hhhHHHHHhccCce--eccccc
Confidence 96 9999999999999 89999999999999876 4556677788887777775 34433333322222 222222
Q ss_pred HHHHHHHcC----CcccHHHHHHHHHhcc
Q 015541 299 LPQITSCFS----SEKSVRQIIEELKKHQ 323 (405)
Q Consensus 299 ~~~i~~~f~----~~~~ve~i~~~Le~~~ 323 (405)
+..=+.|+. ..|.+|++.++-+++.
T Consensus 257 l~iEe~CYaq~i~t~drLeglaaf~ekr~ 285 (291)
T KOG1679|consen 257 LSIEEMCYAQIIPTKDRLEGLAAFKEKRK 285 (291)
T ss_pred ccHHHHHHHhcCcHHHHHHHHHHHHhhcC
Confidence 222234443 3357888888888776
No 74
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=1.6e-42 Score=339.71 Aligned_cols=188 Identities=21% Similarity=0.209 Sum_probs=167.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (405)
Q Consensus 77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (405)
+++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|+++||+|+|++++..... ........++...++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~--~~~~~~~~~~~~~~~ 115 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYA--GNPQEYRQYMRLFND 115 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcc--cChhHHHHHHHHHHH
Confidence 566999999999999999999999999999999999999999998679999999998765211 111223445555567
Q ss_pred HHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCC
Q 015541 157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKR 236 (405)
Q Consensus 157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~ 236 (405)
++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. +++++++||++
T Consensus 116 l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~-rA~~llltGe~ 194 (360)
T TIGR03200 116 MVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCE-QAMVSGTLCEP 194 (360)
T ss_pred HHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHH-HHHHHHHhCCc
Confidence 88899999999999999999999999999999999999999999999999999999999999999997 99999999999
Q ss_pred CCcHHHHHHcCccceecCCCCh------------HHHHHHHHHh
Q 015541 237 ISTPSDALFAGLGTDYVPSGNL------------GSLKEALLAV 268 (405)
Q Consensus 237 i~~a~eA~~~GLv~~vv~~~~l------------~~~~~~l~~~ 268 (405)
++ |+||+++|||+++||+.++ ++..+++.+.
T Consensus 195 ~s-A~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~ 237 (360)
T TIGR03200 195 WS-AHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRI 237 (360)
T ss_pred Cc-HHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHH
Confidence 99 9999999999999999887 6666666654
No 75
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=7.4e-43 Score=362.51 Aligned_cols=250 Identities=15% Similarity=0.084 Sum_probs=203.7
Q ss_pred CccEEEEE-eeCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEeeCCCCC-cccC
Q 015541 65 EEFVKGNV-HPNGVAVITLDRPKAL-------------NAMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRA-FCAG 128 (405)
Q Consensus 65 ~~~i~~~~-~~~~v~~ItLnrp~~~-------------Nal~~~m~~~L~~~l~~~~-~d~~v~~vvl~g~g~~~-FcaG 128 (405)
+.+|.+.. .+++|++||||||+++ |+||.+|+.+|.+++..++ +|++||+|||||.| ++ ||+|
T Consensus 255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G-~~~F~aG 333 (546)
T TIGR03222 255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQG-DAELVLA 333 (546)
T ss_pred eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCC-CCceecC
Confidence 44555543 3689999999999999 9999999999999999998 46999999999997 66 9999
Q ss_pred CChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEE-CCcccccc-ceecccccEEEE-------eCCeeee
Q 015541 129 MDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLM-DGVTMGFG-IGISGHGRYRIV-------TEKTLLA 199 (405)
Q Consensus 129 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v-~G~a~GgG-~~lal~~D~ria-------te~a~f~ 199 (405)
+|++.... .........+.....++..|..+|||+||+| ||+|+||| ++|+++||+||| +++++|+
T Consensus 334 ~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~ 408 (546)
T TIGR03222 334 ADALLEAH-----KDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAIT 408 (546)
T ss_pred cCcccccc-----ccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEe
Confidence 99983211 1111112233333457788999999999999 89999999 999999999999 8999999
Q ss_pred CccccccccCCccHHHHHhcCC-ChHHHH--HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH-
Q 015541 200 MPENGIGLFPDVGFSYIAAKGP-GGGSVG--AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH- 275 (405)
Q Consensus 200 ~PE~~iGl~P~~G~~~~L~r~~-G~~~~a--~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~- 275 (405)
+||+++|++|++|++++|+|++ |.. ++ +++++||++|+ |+||+++|||++++|++++.+.+.+++++.....|.
T Consensus 409 ~~e~~lGl~p~~gg~~~L~~~v~G~~-~a~~~~~~ltg~~i~-A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a 486 (546)
T TIGR03222 409 LSELNFGLYPMVNGLSRLATRFYAEP-APVAAVRDKIGQALD-AEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDA 486 (546)
T ss_pred CCccccccCCCcCcHHHHHHHhcCch-hHHHHHHHHhCCCCC-HHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999999999999998 875 77 55999999999 999999999999999999999999999885554443
Q ss_pred -HHHHHHHHHhcCCCCCcch-hhhhHHHHHHHcCCcccHH---HHHHHHHhcc
Q 015541 276 -QDIVALLAKYSSDPEGEAP-LKLLLPQITSCFSSEKSVR---QIIEELKKHQ 323 (405)
Q Consensus 276 -~~i~~~l~~~~~~~~~~~~-l~~~~~~i~~~f~~~~~ve---~i~~~Le~~~ 323 (405)
..+|+.++.-..... +.. +..+...+..+|.++|..| ++-++++|++
T Consensus 487 ~~~~K~~l~~~~~~~~-~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~ 538 (546)
T TIGR03222 487 LTGLEANLRFAGPETM-ETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKK 538 (546)
T ss_pred HHHHHHHHhhcCCcCh-hhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCC
Confidence 334444433222222 233 5666777999999998999 8999999998
No 76
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.8e-42 Score=373.30 Aligned_cols=251 Identities=17% Similarity=0.235 Sum_probs=207.3
Q ss_pred cEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (405)
Q Consensus 67 ~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (405)
.+.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||+| ++||+|+|++++.... ......
T Consensus 7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~--~~~~~~ 83 (715)
T PRK11730 7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAK-DAFIVGADITEFLSLF--AAPEEE 83 (715)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCC-CccccCcCHHHHhhhc--cCCHHH
Confidence 4666654689999999999999999999999999999999999999999999997 7999999999876421 011112
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (405)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~ 226 (405)
...++...+.++..|..+|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. .
T Consensus 84 ~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~-~ 162 (715)
T PRK11730 84 LSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGAD-N 162 (715)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHH-H
Confidence 334556667788899999999999999999999999999999999999999999999999999999999999999987 9
Q ss_pred HHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCC------------CcH-----------HHHHH---
Q 015541 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSE------------DPH-----------QDIVA--- 280 (405)
Q Consensus 227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~------------~~~-----------~~i~~--- 280 (405)
+++|++||++++ |+||+++||||++||++++.+.+.+++...... .|. ...|+
T Consensus 163 A~~llltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~a~~~~~~~~~~~~~k~~~~ 241 (715)
T PRK11730 163 ALEWIAAGKDVR-AEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARRQPKLEPLKLSKIEAMMSFTTAKGMVA 241 (715)
T ss_pred HHHHHHcCCcCC-HHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccccCcccccccccchhHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999888764322 121 22232
Q ss_pred ---------------HHHHhcCCCCCcchhhhhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541 281 ---------------LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 281 ---------------~l~~~~~~~~~~~~l~~~~~~i~~~f~~~~~ve~i~~~Le~~~ 323 (405)
.++... .......++.+...+..++.+++..+.+-++++++.
T Consensus 242 ~~~~~~~pa~~~~~~~i~~~~-~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~ 298 (715)
T PRK11730 242 QKAGKHYPAPMTAVKTIEAAA-GLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQY 298 (715)
T ss_pred HhhccCCccHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 122211 111234455667778899999988999999988764
No 77
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-42 Score=339.50 Aligned_cols=213 Identities=21% Similarity=0.265 Sum_probs=177.2
Q ss_pred CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhC--C
Q 015541 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD--R 142 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~--~ 142 (405)
++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++....... .
T Consensus 9 ~~~v~~e~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G-~~FcaG~Dl~~~~~~~~~~~~~ 86 (302)
T PRK08272 9 LKTMTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG-KGFCAGYDLSAYAEGSSSGGGG 86 (302)
T ss_pred CCeEEEEe-ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCcCHHHHhhcccccccc
Confidence 56688887 689999999999999999999999999999999999999999999998 8999999999986421100 0
Q ss_pred C----------------CCchH--HHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCcccc
Q 015541 143 N----------------TPLVP--KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG 204 (405)
Q Consensus 143 ~----------------~~~~~--~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~ 204 (405)
. ..... .++...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~ 166 (302)
T PRK08272 87 GAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTR 166 (302)
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchh
Confidence 0 00001 23455567788899999999999999999999999999999999999999999999
Q ss_pred ccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHH
Q 015541 205 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALL 282 (405)
Q Consensus 205 iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l 282 (405)
+|.+|.. ..+++++|.. ++++|+|||++|+ |+||+++||||++||++++.+.+.++++......|. ...|.++
T Consensus 167 ~gg~~~~---~~~~~~vG~~-~A~~llltG~~i~-a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K~~l 241 (302)
T PRK08272 167 VWGVPAT---GMWAYRLGPQ-RAKRLLFTGDCIT-GAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVKLAV 241 (302)
T ss_pred cccCChH---HHHHHHhhHH-HHHHHHHcCCccC-HHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8666643 3567889986 9999999999999 999999999999999999999999998874443332 3345555
Q ss_pred HH
Q 015541 283 AK 284 (405)
Q Consensus 283 ~~ 284 (405)
+.
T Consensus 242 ~~ 243 (302)
T PRK08272 242 NS 243 (302)
T ss_pred HH
Confidence 44
No 78
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=9.3e-43 Score=362.81 Aligned_cols=251 Identities=14% Similarity=0.077 Sum_probs=204.4
Q ss_pred CccEEEEE-eeCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEeeCCCCCcccCC
Q 015541 65 EEFVKGNV-HPNGVAVITLDRPKAL-------------NAMNLDMDIKYKSFLDEWES-DPRVKCVLIEGSGPRAFCAGM 129 (405)
Q Consensus 65 ~~~i~~~~-~~~~v~~ItLnrp~~~-------------Nal~~~m~~~L~~~l~~~~~-d~~v~~vvl~g~g~~~FcaG~ 129 (405)
+.++.++. .+++|++||||||+++ |+||.+|+.+|.++++.++. |++||+|||||+|+++||+|+
T Consensus 259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~ 338 (550)
T PRK08184 259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA 338 (550)
T ss_pred eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence 44455554 2578999999999998 68999999999999999986 799999999999745999999
Q ss_pred ChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEEC-Ccccccc-ceecccccEEEEe-------CCeeeeC
Q 015541 130 DIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD-GVTMGFG-IGISGHGRYRIVT-------EKTLLAM 200 (405)
Q Consensus 130 Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~-G~a~GgG-~~lal~~D~riat-------e~a~f~~ 200 (405)
|++.+.. .........+.....++..|..+||||||+|| |+|+||| ++|+++||+|||+ ++++|++
T Consensus 339 Dl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~ 413 (550)
T PRK08184 339 DATLLAH-----KDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITL 413 (550)
T ss_pred Chhhhcc-----cchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEEC
Confidence 9873211 11101122333344577889999999999997 9999999 9999999999999 9999999
Q ss_pred ccccccccCCccHHHHHhcC-CChHHHHHHH--HhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--
Q 015541 201 PENGIGLFPDVGFSYIAAKG-PGGGSVGAYL--GMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH-- 275 (405)
Q Consensus 201 PE~~iGl~P~~G~~~~L~r~-~G~~~~a~~l--~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~-- 275 (405)
||+++|++|++|++++|+|+ +|.. +++++ ++||++|+ |++|+++||||++||++++.+.+.+++++.....|.
T Consensus 414 pe~~~Gl~p~~gg~~~L~r~~vG~~-~A~~~~l~~tg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~ 491 (550)
T PRK08184 414 SALNFGLYPMVNGLSRLARRFYGEP-DPLAAVRAKIGQPLD-ADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDAL 491 (550)
T ss_pred ccccccCCCCCCcHHHhHHHhcChH-HHHHHHHHHhCCcCC-HHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999988 6986 88887 59999999 999999999999999999999999999885554443
Q ss_pred HHHHHHHHHhcCCCCCcch-hhhhHHHHHHHcCCcccHH---HHHHHHHhcc
Q 015541 276 QDIVALLAKYSSDPEGEAP-LKLLLPQITSCFSSEKSVR---QIIEELKKHQ 323 (405)
Q Consensus 276 ~~i~~~l~~~~~~~~~~~~-l~~~~~~i~~~f~~~~~ve---~i~~~Le~~~ 323 (405)
..+|+.++....... +.. +..+...+..+|.+++..| ++-+++++++
T Consensus 492 ~~~K~~l~~~~~~~~-~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~ 542 (550)
T PRK08184 492 TGMEANLRFAGPETM-ETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQK 542 (550)
T ss_pred HHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCC
Confidence 344555544322222 233 5556777899999998899 8999999998
No 79
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-41 Score=319.48 Aligned_cols=205 Identities=22% Similarity=0.213 Sum_probs=177.1
Q ss_pred ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (405)
Q Consensus 66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 145 (405)
+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++ +++++|||+|.| ++||+|+|++++... ..
T Consensus 3 ~~i~~~~-~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g-~~F~~G~Dl~~~~~~------~~ 71 (229)
T PRK06213 3 ELVSYTL-EDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQP-GIFSGGFDLKVMTSG------AQ 71 (229)
T ss_pred ceEEEEe-cCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCC-CceEcCcCHHHHhcc------hH
Confidence 3577776 6899999999995 69999999999999999988 457999999997 899999999987541 12
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC-eeeeCccccccccCCccHHHHHhcCCChH
Q 015541 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (405)
Q Consensus 146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~-a~f~~PE~~iGl~P~~G~~~~L~r~~G~~ 224 (405)
....++...++++..+.++|||+||+|||+|+|||++|+++||||||+++ ++|++||+++|++|+.|++.++++.+|..
T Consensus 72 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~ 151 (229)
T PRK06213 72 AAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPS 151 (229)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHH
Confidence 23445666678888999999999999999999999999999999999999 99999999999998888888999999986
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHH
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLA 283 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~ 283 (405)
.+++|++||++++ |+||+++||||+++|++++.+.+.++++......|. ..+|..++
T Consensus 152 -~a~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~ 210 (229)
T PRK06213 152 -AFQRAVINAEMFD-PEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHAATKLKVR 210 (229)
T ss_pred -HHHHHHHcCcccC-HHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8999999999999 999999999999999999999999998875443333 33444443
No 80
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=4.8e-41 Score=362.19 Aligned_cols=248 Identities=21% Similarity=0.287 Sum_probs=203.2
Q ss_pred EEEEEeeCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541 68 VKGNVHPNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (405)
Q Consensus 68 i~~~~~~~~v~~ItLnrp-~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (405)
+.++..+++|++|||||| +++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++.... ....
T Consensus 7 ~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~----~~~~ 82 (708)
T PRK11154 7 FTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACK----TAQE 82 (708)
T ss_pred EEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccC----CHHH
Confidence 556665689999999999 68999999999999999999999999999999998768999999999875311 1111
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC--eeeeCccccccccCCccHHHHHhcCCChH
Q 015541 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (405)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~--a~f~~PE~~iGl~P~~G~~~~L~r~~G~~ 224 (405)
...+......++..|.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++|..
T Consensus 83 ~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~ 162 (708)
T PRK11154 83 AEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVS 162 (708)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHH
Confidence 2334445566788999999999999999999999999999999999986 59999999999999999999999999997
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhh-------------cCCCc-----------------
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVT-------------FSEDP----------------- 274 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~-------------~~~~~----------------- 274 (405)
.+++|++||++++ |+||+++||||++||++++.+.+.+++... .+..|
T Consensus 163 -~A~~llltG~~i~-a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 240 (708)
T PRK11154 163 -TALDMILTGKQLR-AKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVRERLLEGNPLGRALLFKQARKKTLAK 240 (708)
T ss_pred -HHHHHHHhCCcCC-HHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCcCCchhhhcccCchhHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999999999999999999998772 12222
Q ss_pred -------HHHHHHHHHHhcCCCCCcchhhhhHHHHHHHcCCcccHHHHHHHHHhc
Q 015541 275 -------HQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKH 322 (405)
Q Consensus 275 -------~~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f~~~~~ve~i~~~Le~~ 322 (405)
...++++++.... ......+..+.+.+..++.+++..+.+-+++.++
T Consensus 241 ~~g~~~A~~~~k~~i~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~ 294 (708)
T PRK11154 241 TQGNYPAPERILDVVRTGLE-KGMSSGYEAEARAFGELAMTPESAALRSIFFATT 294 (708)
T ss_pred cccCChHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1233444443211 1123445666777889999997888888877543
No 81
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=7.2e-41 Score=317.21 Aligned_cols=196 Identities=15% Similarity=0.146 Sum_probs=163.6
Q ss_pred EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVK-CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (405)
Q Consensus 68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~-~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (405)
++++. +++|++|+||||++ |+||.+|+.+|.++++.++.|++++ +||++|.| ++||+|+|++++... ......
T Consensus 2 ~~~~~-~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g-~~FsaG~Dl~~~~~~---~~~~~~ 75 (239)
T PLN02267 2 CTLEK-RGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEG-KFFSNGFDLAWAQAA---GSAPSR 75 (239)
T ss_pred ceeEe-cCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCC-CceeCCcCHHHHhcc---ccCHHH
Confidence 45665 68999999999986 9999999999999999999999875 77778876 899999999986421 111111
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEe-CCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (405)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riat-e~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~ 225 (405)
...+....++++..|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|+.|+.+++++|++.+|..
T Consensus 76 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~- 154 (239)
T PLN02267 76 LHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSP- 154 (239)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChH-
Confidence 22344455667888999999999999999999999999999999998 5789999999999973344578999999986
Q ss_pred HH-HHHHhcCCCCCcHHHHHHcCccceecCC-CChHHHHHHHHHhhcC
Q 015541 226 VG-AYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFS 271 (405)
Q Consensus 226 ~a-~~l~ltG~~i~~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~ 271 (405)
.+ ++|++||++++ |+||+++||||+++|+ +++.+.+.++++....
T Consensus 155 ~a~~~llltG~~~~-a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~ 201 (239)
T PLN02267 155 AARRDVLLRAAKLT-AEEAVEMGIVDSAHDSAEETVEAAVRLGEELAA 201 (239)
T ss_pred HHHHHHHHcCCcCC-HHHHHHCCCcceecCCHHHHHHHHHHHHHHHhh
Confidence 78 69999999999 9999999999999985 5788888888877433
No 82
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=3.1e-40 Score=355.39 Aligned_cols=197 Identities=20% Similarity=0.296 Sum_probs=176.6
Q ss_pred cEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (405)
Q Consensus 67 ~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (405)
.+.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... .....
T Consensus 7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~~~~~ 83 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGK-DAFIVGADITEFLGLFA--LPDAE 83 (714)
T ss_pred eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccCcCHHHHhhccc--CCHHH
Confidence 4777755689999999999999999999999999999999999999999999997 79999999999864210 11112
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (405)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~ 226 (405)
...++....+++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. .
T Consensus 84 ~~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~-~ 162 (714)
T TIGR02437 84 LIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGAD-N 162 (714)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHH-H
Confidence 234455566788899999999999999999999999999999999999999999999999999999999999999987 9
Q ss_pred HHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHh
Q 015541 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV 268 (405)
Q Consensus 227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~ 268 (405)
+++|++||++++ |++|+++||||+++|.+++.+.+.+++..
T Consensus 163 A~~llltG~~~~-A~eA~~~GLvd~vv~~~~l~~~a~~~a~~ 203 (714)
T TIGR02437 163 ALEWIASGKENR-AEDALKVGAVDAVVTADKLGAAALQLLKD 203 (714)
T ss_pred HHHHHHcCCcCC-HHHHHHCCCCcEeeChhHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999888888855
No 83
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=1.2e-39 Score=350.78 Aligned_cols=243 Identities=19% Similarity=0.272 Sum_probs=196.0
Q ss_pred EEEeeCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEe-eCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541 70 GNVHPNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE-GSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (405)
Q Consensus 70 ~~~~~~~v~~ItLnrp-~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~-g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (405)
++..+++|++|||||| ++.|+||.+|+.+|.++++.++.|+++|+|||+ |.| ++||+|+|++++... ......
T Consensus 4 ~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g-~~FcaG~Dl~~~~~~----~~~~~~ 78 (699)
T TIGR02440 4 LTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKP-DNFIAGADISMLAAC----QTAGEA 78 (699)
T ss_pred EEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CceeeccCchhhhcc----CChhHH
Confidence 3444689999999999 689999999999999999999999999999975 565 899999999987531 111223
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC--eeeeCccccccccCCccHHHHHhcCCChHH
Q 015541 148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (405)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~--a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~ 225 (405)
..++.....++..|.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++|..
T Consensus 79 ~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~- 157 (699)
T TIGR02440 79 KALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVS- 157 (699)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHH-
Confidence 344555667888999999999999999999999999999999999986 79999999999999999999999999997
Q ss_pred HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHh------------hcCCC-cHH----------------
Q 015541 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV------------TFSED-PHQ---------------- 276 (405)
Q Consensus 226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~------------~~~~~-~~~---------------- 276 (405)
.+++|++||+.++ |++|+++||||++||++++.+.+.+++.+ .+... |..
T Consensus 158 ~A~~llltG~~~~-a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~ 236 (699)
T TIGR02440 158 TALDMILTGKQLR-AKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKT 236 (699)
T ss_pred HHHHHHHcCCcCC-HHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCccchhhhcccCchhHHHHHHHHHHHHHHhc
Confidence 9999999999999 99999999999999999999999999862 12222 211
Q ss_pred --------HHHHHHHHhcCCCCCcchhhhhHHHHHHHcCCcccHHHHHHHHH
Q 015541 277 --------DIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELK 320 (405)
Q Consensus 277 --------~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f~~~~~ve~i~~~Le 320 (405)
.+++.++.-. .......++.+...+.+++.+++..+.+-.++-
T Consensus 237 ~~~~~a~~~~~~~i~~~~-~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~ 287 (699)
T TIGR02440 237 QGNYPAAERILDVVRQGL-AQGMQKGLDAEARAFGELVMTPESAALRSIFFA 287 (699)
T ss_pred ccCChhHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1111122211 111234566677788999999877777777664
No 84
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=1.3e-39 Score=298.50 Aligned_cols=193 Identities=31% Similarity=0.419 Sum_probs=175.9
Q ss_pred EEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchH
Q 015541 69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP 148 (405)
Q Consensus 69 ~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 148 (405)
.++. +++|++|+||+|++.|++|.+|+++|.++++.++.|+++++|||||. ++.||+|+|++++.... .......
T Consensus 2 ~~~~-~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~-~~~Fs~G~dl~~~~~~~---~~~~~~~ 76 (195)
T cd06558 2 LVER-DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGA-GKAFCAGADLKELAALS---DAGEEAR 76 (195)
T ss_pred EEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhccc---ccchhHH
Confidence 4555 57999999999999999999999999999999999999999999998 48999999999987622 1111256
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHH
Q 015541 149 KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGA 228 (405)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~ 228 (405)
.++...+.+...+..++||+||+|||+|+|||++++++||+||++++++|++||+++|++|+.|++++|++++|.. .+.
T Consensus 77 ~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~-~a~ 155 (195)
T cd06558 77 AFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPA-RAR 155 (195)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHH-HHH
Confidence 7888889999999999999999999999999999999999999999999999999999999999999999999986 999
Q ss_pred HHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHh
Q 015541 229 YLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV 268 (405)
Q Consensus 229 ~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~ 268 (405)
+++++|+.++ |+||+++||++++++.+++.+.+.++++.
T Consensus 156 ~~~l~g~~~~-a~ea~~~Glv~~~~~~~~l~~~a~~~a~~ 194 (195)
T cd06558 156 ELLLTGRRIS-AEEALELGLVDEVVPDEELLAAALELARR 194 (195)
T ss_pred HHHHcCCccC-HHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence 9999999999 99999999999999998888888887653
No 85
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=2.8e-39 Score=348.82 Aligned_cols=191 Identities=27% Similarity=0.400 Sum_probs=168.1
Q ss_pred ccccccCCCccEEEEEeeCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEE-EEeeCCCCCcccCCChhhH
Q 015541 57 ATMAAAGAEEFVKGNVHPNGVAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCV-LIEGSGPRAFCAGMDIKGV 134 (405)
Q Consensus 57 ~~~~~~~~~~~i~~~~~~~~v~~ItLnrp~-~~Nal~~~m~~~L~~~l~~~~~d~~v~~v-vl~g~g~~~FcaG~Dl~~~ 134 (405)
+++.+.+.++.+.++. +++|++||||||+ +.|+||.+|+.+|.++++.++.|++||+| |++|.| ++||+|+|++++
T Consensus 4 ~~~~~~~~~~~~~~~~-~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g-~~F~aG~Dl~~~ 81 (737)
T TIGR02441 4 STSAALMARTHRHYEV-KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP-GSFVAGADIQMI 81 (737)
T ss_pred CCCCCCCCCCeEEEEE-ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCC-CcceeCcCHHHH
Confidence 3333445677788887 6999999999998 68999999999999999999999999975 568886 899999999998
Q ss_pred HHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC--eeeeCccccccccCCcc
Q 015541 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENGIGLFPDVG 212 (405)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~--a~f~~PE~~iGl~P~~G 212 (405)
... ........++.....++..|.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|
T Consensus 82 ~~~----~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~G 157 (737)
T TIGR02441 82 AAC----KTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAG 157 (737)
T ss_pred hcc----CChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCcc
Confidence 631 111223445566677888999999999999999999999999999999999987 58999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCC
Q 015541 213 FSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255 (405)
Q Consensus 213 ~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~ 255 (405)
++++|+|++|.. .+++|++||++++ |++|+++||||++||+
T Consensus 158 gt~rLprliG~~-~A~~l~ltG~~i~-a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 158 GTQRLPKLTGVP-AALDMMLTGKKIR-ADRAKKMGIVDQLVDP 198 (737)
T ss_pred HhhhHHHhhCHH-HHHHHHHcCCcCC-HHHHHHCCCCeEecCC
Confidence 999999999987 9999999999999 9999999999999997
No 86
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-39 Score=293.56 Aligned_cols=209 Identities=22% Similarity=0.370 Sum_probs=179.3
Q ss_pred CccEEEE--EeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhh-hC
Q 015541 65 EEFVKGN--VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQ-KD 141 (405)
Q Consensus 65 ~~~i~~~--~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~-~~ 141 (405)
+..+.+. ..+..|..+.||||.|+||||..|..|+.++++.+..||++|+|||.|+| |.||+|+|+..+..... ..
T Consensus 18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~G-KhFcaGIDl~~~~~~~~~~~ 96 (292)
T KOG1681|consen 18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAG-KHFCAGIDLNDMASDRILQP 96 (292)
T ss_pred cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCC-cceecccCcchhhhhhcccc
Confidence 4544444 34457999999999999999999999999999999999999999999997 99999999887654311 11
Q ss_pred CC------CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHH
Q 015541 142 RN------TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY 215 (405)
Q Consensus 142 ~~------~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~ 215 (405)
.. ....+++....++.+..|.+||||||++|+|+|+|||+-|..+||+|+|++++.|+.-|+.+|+..|+|.-.
T Consensus 97 ~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~ 176 (292)
T KOG1681|consen 97 EGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN 176 (292)
T ss_pred ccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence 11 123455667777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCC-CChHHHHHHHHHhhcCCCcH
Q 015541 216 IAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPH 275 (405)
Q Consensus 216 ~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~ 275 (405)
+||+.+|..+.++++.+|++.++ |.||+..|||++++|+ +++...+..++..+..+.|.
T Consensus 177 RlpkvVGn~s~~~elafTar~f~-a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpv 236 (292)
T KOG1681|consen 177 RLPKVVGNQSLARELAFTARKFS-ADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPV 236 (292)
T ss_pred hhhHHhcchHHHHHHHhhhhhcc-hhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCce
Confidence 99999996679999999999999 9999999999999997 55666677777665555553
No 87
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=4.6e-39 Score=288.50 Aligned_cols=254 Identities=21% Similarity=0.236 Sum_probs=207.4
Q ss_pred CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeC--CCCCcccCCChhhHHHhhhhC
Q 015541 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS--GPRAFCAGMDIKGVVAEIQKD 141 (405)
Q Consensus 64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~--g~~~FcaG~Dl~~~~~~~~~~ 141 (405)
.++.|+|+...++|+.||+|||+++||+.+..+.||.++|..+..|++|.+|||||+ |+++||+|||-+-..... .-
T Consensus 16 ~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~-gY 94 (282)
T COG0447 16 GYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSG-GY 94 (282)
T ss_pred CcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCC-Cc
Confidence 478899998658999999999999999999999999999999999999999999975 889999999987543311 00
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCC
Q 015541 142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP 221 (405)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~ 221 (405)
.+.+... --...++-+.|+.+||||||.|+|+++|||-.|-+.||+-||+++++|++...++|-|-++-++-+|.|++
T Consensus 95 ~~d~~~~--rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V 172 (282)
T COG0447 95 VDDDGIP--RLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV 172 (282)
T ss_pred cCCccCc--ccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh
Confidence 0111111 11234566789999999999999999999999999999999999999999999999997777778899999
Q ss_pred ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541 222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ 301 (405)
Q Consensus 222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 301 (405)
|.. .++++.+.++.++ |++|+++||||.|||.++|++...+++.+++.+.|. +++-++..|+........+.+....
T Consensus 173 GqK-kArEIwfLcR~Y~-A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~-AlR~LK~Afnad~DGlaG~q~~ag~ 249 (282)
T COG0447 173 GQK-KAREIWFLCRQYD-AEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPT-ALRMLKAAFNADCDGLAGLQELAGN 249 (282)
T ss_pred hhh-hhHHhhhhhhhcc-HHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChH-HHHHHHHHhcCCCchhhHHHHhccc
Confidence 986 9999999999999 999999999999999999999999999998888776 6777777776554322222221111
Q ss_pred HHH-HcCCcccHHHHHHHHHhcc
Q 015541 302 ITS-CFSSEKSVRQIIEELKKHQ 323 (405)
Q Consensus 302 i~~-~f~~~~~ve~i~~~Le~~~ 323 (405)
-.. .+..++.+|+--+++|+|+
T Consensus 250 at~L~YmTdEa~EGr~AF~eKR~ 272 (282)
T COG0447 250 ATLLYYMTDEAQEGRDAFLEKRK 272 (282)
T ss_pred ceEEEEechhhhhhHHHHhhccC
Confidence 111 1334558999999999998
No 88
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.6e-38 Score=330.09 Aligned_cols=207 Identities=15% Similarity=0.169 Sum_probs=173.6
Q ss_pred CCCccEEEEEeeCcEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEeeCCCCCcccCCCh
Q 015541 63 GAEEFVKGNVHPNGVAVITLDRPK----------ALNAMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRAFCAGMDI 131 (405)
Q Consensus 63 ~~~~~i~~~~~~~~v~~ItLnrp~----------~~Nal~~~m~~~L~~~l~~~~-~d~~v~~vvl~g~g~~~FcaG~Dl 131 (405)
+.++++.++. +++|++||||||+ ++|+||.+|+.+|.++++.++ .|+++|+|||||.|+++||+|+|+
T Consensus 8 ~~~~~v~~~~-~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL 86 (546)
T TIGR03222 8 SQYRHWKLTF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANI 86 (546)
T ss_pred CCCceEEEEe-eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCH
Confidence 3467788887 6899999999976 899999999999999999999 799999999999866899999999
Q ss_pred hhHHHhhhhCCCCCchHHHHHH-HHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC--eeeeCcccc-ccc
Q 015541 132 KGVVAEIQKDRNTPLVPKVFTA-EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENG-IGL 207 (405)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~--a~f~~PE~~-iGl 207 (405)
+++.... .........+... ...+...+.++||||||+|||+|+|||++|+++||+|||+++ ++|++||++ +|+
T Consensus 87 ~~~~~~~--~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl 164 (546)
T TIGR03222 87 FMLGLST--HAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGV 164 (546)
T ss_pred HHHhccc--cchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCc
Confidence 9874311 0000011111111 123445678999999999999999999999999999999986 799999997 999
Q ss_pred cCCccHHHHHh--cCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCc
Q 015541 208 FPDVGFSYIAA--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDP 274 (405)
Q Consensus 208 ~P~~G~~~~L~--r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~ 274 (405)
+|++|++++++ +.+|.. ++++|+|||++++ |+||+++||||++||++++.+.+.+++.+.....|
T Consensus 165 ~P~~gg~~~l~~~~~vg~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p 231 (546)
T TIGR03222 165 LPGTGGLTRVTDKRRVRRD-HADIFCTIEEGVR-GKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSD 231 (546)
T ss_pred CCccchhhhccccchhCHH-HHHHHHHcCCCcc-HHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCC
Confidence 99999999997 688986 9999999999999 99999999999999999999999999887544433
No 89
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.1e-37 Score=324.87 Aligned_cols=205 Identities=16% Similarity=0.185 Sum_probs=171.9
Q ss_pred CCCccEEEEEeeCcEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEeeCCCCCcccCCCh
Q 015541 63 GAEEFVKGNVHPNGVAVITLDRP-------K---ALNAMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRAFCAGMDI 131 (405)
Q Consensus 63 ~~~~~i~~~~~~~~v~~ItLnrp-------~---~~Nal~~~m~~~L~~~l~~~~-~d~~v~~vvl~g~g~~~FcaG~Dl 131 (405)
+.++.+.++. +++|++|||||| + ++|+||.+|+.+|.++++.++ .|++||+|||||.|+++||+|+|+
T Consensus 12 ~~~~~~~~e~-~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL 90 (550)
T PRK08184 12 SQYRHWKLSF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI 90 (550)
T ss_pred CCCceEEEEe-eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence 4577899987 689999999965 4 899999999999999999999 789999999999877899999999
Q ss_pred hhHHHhhhhCCCCCchHHHHHHHH-HHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC--eeeeCcccc-ccc
Q 015541 132 KGVVAEIQKDRNTPLVPKVFTAEY-SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENG-IGL 207 (405)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~--a~f~~PE~~-iGl 207 (405)
+++.... .........+....+ .+...+..+||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|+
T Consensus 91 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl 168 (550)
T PRK08184 91 FMLGGSS--HAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGV 168 (550)
T ss_pred HhHhccc--cchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhcccc
Confidence 9874311 000000111111111 2345678999999999999999999999999999999987 899999997 999
Q ss_pred cCCccHHHHHh--cCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCC
Q 015541 208 FPDVGFSYIAA--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSE 272 (405)
Q Consensus 208 ~P~~G~~~~L~--r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~ 272 (405)
+|++|++++|+ +.+|.. ++++|++||++++ |+||+++||||++||++++.+.+.+++.+....
T Consensus 169 ~P~~gg~~rl~~~~~vg~~-~A~~llltG~~i~-AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~ 233 (550)
T PRK08184 169 LPGTGGLTRVTDKRKVRRD-LADIFCTIEEGVR-GKRAVDWRLVDEVVKPSKFDAKVAERAAELAAA 233 (550)
T ss_pred CCCcchHHHhhhhhhcCHH-HHHHHHHhCCccc-HHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhC
Confidence 99999999998 779986 9999999999999 999999999999999999999998888775433
No 90
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=9.7e-36 Score=274.89 Aligned_cols=251 Identities=19% Similarity=0.249 Sum_probs=204.7
Q ss_pred CccEEEEEeeCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541 65 EEFVKGNVHPNGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (405)
Q Consensus 65 ~~~i~~~~~~~~v~~ItLn-rp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 143 (405)
+..+.++. +|++.+|.+| ||++.|+|+.+|+.++.++|.....|+++..++++|.| ++||+|.|++.+......+.
T Consensus 6 ~~~~vv~~-~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G-~~f~sG~Df~~~~~~~~~d~- 82 (266)
T KOG0016|consen 6 YREIVVTR-ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNG-SYFCSGLDFSPFAKALDDDA- 82 (266)
T ss_pred ccceEEEe-cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCc-cEEeeccccchhhhcCCCcc-
Confidence 44566766 6999999999 99999999999999999999999999999999999997 89999999998876432221
Q ss_pred CCchHH---HHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcC
Q 015541 144 TPLVPK---VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG 220 (405)
Q Consensus 144 ~~~~~~---~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~ 220 (405)
...... +.....-....+.++|||+||.|||+|+|-|+.+.-.||+++|+|+++|..|.+++|..|++|++|.||++
T Consensus 83 ~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~i 162 (266)
T KOG0016|consen 83 NEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKI 162 (266)
T ss_pred cccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHh
Confidence 111221 22223346778899999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhh
Q 015541 221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLL 298 (405)
Q Consensus 221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~ 298 (405)
+|.. .+.+|+|.|++++ |+||...|||++++|.+++.+.+..-+++...-.|. +..|++++.-.. .......+.+
T Consensus 163 mG~~-~A~E~ll~~~klt-A~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~~~K~L~rs~~k-~~l~~an~~E 239 (266)
T KOG0016|consen 163 MGSA-SANEMLLFGEKLT-AQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLLGMKKLLRSNIK-EELIKANEEE 239 (266)
T ss_pred hchh-hHHHHHHhCCccc-HHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHhhHHH
Confidence 9986 9999999999999 999999999999999999998888887774443333 445666654211 1112345567
Q ss_pred HHHHHHHcCCcccHHHHHHHHHh
Q 015541 299 LPQITSCFSSEKSVRQIIEELKK 321 (405)
Q Consensus 299 ~~~i~~~f~~~~~ve~i~~~Le~ 321 (405)
...+.+.|.+++..+.+.+++.+
T Consensus 240 ~~~l~~~W~s~e~~~~~~~~~~~ 262 (266)
T KOG0016|consen 240 CNVLLKQWVSAECLARFKQYLSK 262 (266)
T ss_pred HHHHHhhccChHHHHHHHHHhcc
Confidence 77888999888677777766654
No 91
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=3.9e-35 Score=260.95 Aligned_cols=240 Identities=23% Similarity=0.355 Sum_probs=199.1
Q ss_pred eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHH
Q 015541 74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA 153 (405)
Q Consensus 74 ~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (405)
.++|..|+||+|+++|.|+..|+.+|.+.|.....+.++|+|||+..| +.||+|.||+++.. +...+.-...|..
T Consensus 39 ~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~G-kifSaGH~LKELt~----e~g~d~haevFqt 113 (287)
T KOG1682|consen 39 HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQG-KIFSAGHNLKELTN----EPGSDIHAEVFQT 113 (287)
T ss_pred ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCC-ccccccccHHHhhc----CccchHHHHHHHH
Confidence 489999999999999999999999999999999999999999999997 89999999999986 2233445668888
Q ss_pred HHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhc
Q 015541 154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 233 (405)
Q Consensus 154 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~lt 233 (405)
.-+++..|.++|+|||+-|||++..+||.|...||++||+++++|..|-..+|+|...-|. -|.|.+.+. .+.||++|
T Consensus 114 c~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRk-va~~ML~T 191 (287)
T KOG1682|consen 114 CTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRK-VAAYMLMT 191 (287)
T ss_pred HHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchh-HHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999998554443 467888875 99999999
Q ss_pred CCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhc-CCC--CCcchhhhhHHHHHHHcCCcc
Q 015541 234 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYS-SDP--EGEAPLKLLLPQITSCFSSEK 310 (405)
Q Consensus 234 G~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~-~~~--~~~~~l~~~~~~i~~~f~~~~ 310 (405)
|.+|+ +++|+..||++++||.++++...++++..+-+. + +++-.+=.+|. .+. .....+....+.+-+.|.-.|
T Consensus 192 g~Pi~-~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~-s-rav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d 268 (287)
T KOG1682|consen 192 GLPIT-GEEALISGLVSKVVPAEELDKEIEEITNAIKAK-S-RAVISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGD 268 (287)
T ss_pred CCCCc-hHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhh-H-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccc
Confidence 99999 899999999999999999999999988763221 1 23333323322 111 111223334455677787778
Q ss_pred cHHHHHHHHHhcc
Q 015541 311 SVRQIIEELKKHQ 323 (405)
Q Consensus 311 ~ve~i~~~Le~~~ 323 (405)
+.|+|.+++++++
T Consensus 269 ~kegiasf~~krp 281 (287)
T KOG1682|consen 269 TKEGIASFFEKRP 281 (287)
T ss_pred hHHHHHHHhccCC
Confidence 9999999999998
No 92
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.78 E-value=6.4e-19 Score=159.67 Aligned_cols=140 Identities=15% Similarity=0.030 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECC
Q 015541 95 MDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDG 174 (405)
Q Consensus 95 m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G 174 (405)
.+.+|.++++.+++|++|++|||++ ||.|+|+.... ..++++..+.+++|||||++||
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~~-----------------~~~~~i~~~~~~~kpVia~v~G 80 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTASE-----------------VIRAELAAARAAGKPVVASGGG 80 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHHH-----------------HHHHHHHHHHhCCCCEEEEECC
Confidence 5678999999999999999999986 68899876421 1234566788899999999999
Q ss_pred ccccccceecccccEEEEeCCeeeeCccccccccCCccHHH--------HHhcCCC--hHHHHHHHHhcCCCCCcHHHHH
Q 015541 175 VTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY--------IAAKGPG--GGSVGAYLGMTGKRISTPSDAL 244 (405)
Q Consensus 175 ~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~--------~L~r~~G--~~~~a~~l~ltG~~i~~a~eA~ 244 (405)
.|.|||+.|+++||++++++++.|+.+.+..+..+...... .+++..| .. ...+++..|..++ |++|+
T Consensus 81 ~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~-~~~~~l~~g~~~~-a~~A~ 158 (177)
T cd07014 81 NAASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPE-QQIDKIAQGGVWT-GQDAK 158 (177)
T ss_pred chhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHH-HhHHHhcCcCeEe-HHHHH
Confidence 99999999999999999999999999987766433322222 3444445 43 6788889999999 99999
Q ss_pred HcCccceecCCCCh
Q 015541 245 FAGLGTDYVPSGNL 258 (405)
Q Consensus 245 ~~GLv~~vv~~~~l 258 (405)
+.||||++.+.+++
T Consensus 159 ~~GLVD~v~~~~e~ 172 (177)
T cd07014 159 ANGLVDSLGSFDDA 172 (177)
T ss_pred HcCCcccCCCHHHH
Confidence 99999999986554
No 93
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.75 E-value=6.4e-18 Score=154.49 Aligned_cols=146 Identities=12% Similarity=0.017 Sum_probs=114.5
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEe-eCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541 78 AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE-GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (405)
Q Consensus 78 ~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~-g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (405)
.+|.|+ ..++..+...+.+.|+.++.|+ ++.|+|. .+ -||++..-. .
T Consensus 2 ~vv~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InS------pGG~v~~~~--------------------~ 49 (187)
T cd07020 2 YVLEIN-----GAITPATADYLERAIDQAEEGG-ADALIIELDT------PGGLLDSTR--------------------E 49 (187)
T ss_pred EEEEEe-----eEEChHHHHHHHHHHHHHHhCC-CCEEEEEEEC------CCCCHHHHH--------------------H
Confidence 455665 3456677888999999998765 7888886 32 234543211 3
Q ss_pred HHHHHHhCCCcEEEEEC---CccccccceecccccEEEEeCCeeeeCccccccccCCc--------------cHHHHHhc
Q 015541 157 LICKISEYKKPYISLMD---GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDV--------------GFSYIAAK 219 (405)
Q Consensus 157 l~~~i~~~~kPvIa~v~---G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~--------------G~~~~L~r 219 (405)
+...|..+||||||+|+ |+|+|||+.|+++||+|+++++++|++++...|..+.. +....+++
T Consensus 50 i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (187)
T cd07020 50 IVQAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAE 129 (187)
T ss_pred HHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999 99999999999999999999999999999985554432 24557888
Q ss_pred CCChH-HHHHHHHhcCCCCCcHHHHHHcCccceecCCC
Q 015541 220 GPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256 (405)
Q Consensus 220 ~~G~~-~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~ 256 (405)
..|.. ..+.+++++|+.++ |+||+++||||++++++
T Consensus 130 ~~G~~~~~a~~~l~~g~~~~-a~eA~~~Glvd~v~~~~ 166 (187)
T cd07020 130 LRGRNAEWAEKAVRESLSLT-AEEALKLGVIDLIAADL 166 (187)
T ss_pred HcCCCHHHHHHHHHcCCeec-HHHHHHcCCcccccCCH
Confidence 88862 27899999999999 99999999999999874
No 94
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=99.73 E-value=1.6e-18 Score=146.61 Aligned_cols=92 Identities=36% Similarity=0.686 Sum_probs=72.1
Q ss_pred hhhhHHHHHHHcCCcccHHHHHHHHHhccCCccchhhHHHHHHHHHHhccCCchHHHHHHHHHHHhhhh----cCCcc--
Q 015541 295 LKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH----GKTDN-- 368 (405)
Q Consensus 295 l~~~~~~i~~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~~l~~~SP~sl~vt~~~~~~~~~~~----~~~e~-- 368 (405)
|...+..|++||+.+ ++++|++.|+... .+|++++++.|+++||+||+|||+++++++... ..+|+
T Consensus 2 L~~~~~~I~~~F~~~-s~~eI~~~L~~~~-------~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~ 73 (118)
T PF13766_consen 2 LAEHLEAIDRCFSAD-SVEEIIEALEADG-------DEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRL 73 (118)
T ss_dssp CHHCHHHHHHHTTSS-SHHHHHHHHHHHS--------HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCC-CHHHHHHHHHccC-------cHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHH
Confidence 456778899999988 9999999999966 799999999999999999999999999987631 12333
Q ss_pred --------CCcc-----------CCCCCCCCcCCCCHHHHHhhcc
Q 015541 369 --------ELSK-----------NPKWNPASLEEVNQSEVEALFE 394 (405)
Q Consensus 369 --------~~~~-----------~P~W~~~sl~~V~~~~v~~~f~ 394 (405)
||.+ +|+|+|++++||++++|++||+
T Consensus 74 a~~~~~~~DF~EGVRA~LIDKd~~P~W~p~~l~~V~~~~V~~~f~ 118 (118)
T PF13766_consen 74 ASRCMRHPDFAEGVRALLIDKDKNPKWSPASLEDVSDEDVDSFFE 118 (118)
T ss_dssp HHHHHCCSCHHHHHHHHTTS-------SSSSCCCS-HHHHHHHCS
T ss_pred HHHHhccchHHHHHHHHHhcCCCCCCCCCCChHHCCHHHHHHHhC
Confidence 3332 8999999999999999999995
No 95
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.62 E-value=1e-15 Score=142.52 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=81.1
Q ss_pred EEEEEEcCC--CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHH
Q 015541 77 VAVITLDRP--KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAE 154 (405)
Q Consensus 77 v~~ItLnrp--~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 154 (405)
|++|.++-| +..+.-+..++.+|.++|+.+..||+|++|||+ .||+|+|+..+.. .
T Consensus 2 i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~~~-----------------~ 59 (211)
T cd07019 2 IGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTASEV-----------------I 59 (211)
T ss_pred EEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHHHH-----------------H
Confidence 455555433 122333455689999999999999999999996 7999999976532 1
Q ss_pred HHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeee
Q 015541 155 YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA 199 (405)
Q Consensus 155 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~ 199 (405)
++.+..+..++|||||+++|.|.|+|+.|+++||++++++.+.|+
T Consensus 60 ~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~g 104 (211)
T cd07019 60 RAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTG 104 (211)
T ss_pred HHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEE
Confidence 234557788999999999999999999999999999999999886
No 96
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.48 E-value=9.6e-14 Score=147.09 Aligned_cols=154 Identities=19% Similarity=0.206 Sum_probs=118.0
Q ss_pred eCcEEEEEEcCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCC--CCcccCCChhhHHHhhhhCCCCCchHH
Q 015541 74 PNGVAVITLDRPKA--LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP--RAFCAGMDIKGVVAEIQKDRNTPLVPK 149 (405)
Q Consensus 74 ~~~v~~ItLnrp~~--~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~--~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 149 (405)
+++|++|+++.+=. .|..+....+.+.+.|+.+..|++|++|||+-.+| .+||+
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as---------------------- 364 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS---------------------- 364 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH----------------------
Confidence 57899999997632 34444445677889999999999999999996432 23332
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeee------eCcc------ccccccCCccHHHHH
Q 015541 150 VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL------AMPE------NGIGLFPDVGFSYIA 217 (405)
Q Consensus 150 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f------~~PE------~~iGl~P~~G~~~~L 217 (405)
...++.+..+...+|||||.++|.|.+||..++++||.++|++.+.+ +++. .++|+.|+.+.+..+
T Consensus 365 --e~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~ 442 (584)
T TIGR00705 365 --EIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHEL 442 (584)
T ss_pred --HHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCc
Confidence 11123344566778999999999999999999999999999999877 6663 589999988777655
Q ss_pred hc----------------------------CCChHHH-----HHHHHhcCCCCCcHHHHHHcCccceec
Q 015541 218 AK----------------------------GPGGGSV-----GAYLGMTGKRISTPSDALFAGLGTDYV 253 (405)
Q Consensus 218 ~r----------------------------~~G~~~~-----a~~l~ltG~~i~~a~eA~~~GLv~~vv 253 (405)
.+ .++.+ + ..+.+++|+.++ |++|+++||||++.
T Consensus 443 ~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~-R~l~~e~v~~ia~Grv~t-g~eA~~~GLVD~ig 509 (584)
T TIGR00705 443 ANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAG-RNLTPTQVDKVAQGRVWT-GEDAVSNGLVDALG 509 (584)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCHHHHHHHHhCCCcC-HHHHHHcCCcccCC
Confidence 43 33322 3 677889999999 99999999999994
No 97
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.47 E-value=4.4e-13 Score=125.13 Aligned_cols=96 Identities=18% Similarity=0.192 Sum_probs=75.5
Q ss_pred cCCCCCCCC-CHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHH
Q 015541 83 DRPKALNAM-NLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKI 161 (405)
Q Consensus 83 nrp~~~Nal-~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 161 (405)
++|...|++ +..|+.+|.++|+.++.|++|++|||+. +|.|+++.... ..++.+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~-----~s~gg~~~~~~-----------------~l~~~l~~~ 70 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI-----DSPGGEVAGVF-----------------ELADAIRAA 70 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE-----eCCCCcHHHHH-----------------HHHHHHHHH
Confidence 566666764 5789999999999999999999999975 45677754321 122333334
Q ss_pred HhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCc
Q 015541 162 SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 201 (405)
Q Consensus 162 ~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~P 201 (405)
.. +|||||+++|.|.|||+.|+++||+++|++.+.|+..
T Consensus 71 ~~-~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i 109 (214)
T cd07022 71 RA-GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSI 109 (214)
T ss_pred hc-CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEee
Confidence 44 6999999999999999999999999999999987643
No 98
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.45 E-value=4.6e-13 Score=119.21 Aligned_cols=135 Identities=16% Similarity=0.076 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEE
Q 015541 91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS 170 (405)
Q Consensus 91 l~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa 170 (405)
++..|..+|.+.|+.++.|+.+++|+|+. .|.|+|+.... .+...|..++||||+
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~-----~s~Gg~~~~~~--------------------~i~~~l~~~~kpvva 62 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV-----NTPGGRVDAGM--------------------NIVDALQASRKPVIA 62 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE-----ECCCcCHHHHH--------------------HHHHHHHHhCCCEEE
Confidence 34578899999999999999999999975 46677764322 234467778899999
Q ss_pred EECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHH------HH----h---------cCCChHHHHHHHH
Q 015541 171 LMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY------IA----A---------KGPGGGSVGAYLG 231 (405)
Q Consensus 171 ~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~------~L----~---------r~~G~~~~a~~l~ 231 (405)
.++|.|.|+|+.|+++||.|++.+++.|++.....+.....+-.. .+ . |-.... ....++
T Consensus 63 ~~~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~-~~~~~~ 141 (161)
T cd00394 63 YVGGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTE-KLEEDI 141 (161)
T ss_pred EECChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHh
Confidence 999999999999999999999999999999888765543220000 11 1 112221 346677
Q ss_pred hcCCCCCcHHHHHHcCcccee
Q 015541 232 MTGKRISTPSDALFAGLGTDY 252 (405)
Q Consensus 232 ltG~~i~~a~eA~~~GLv~~v 252 (405)
.+|..++ |+||+++||||++
T Consensus 142 ~~~~~~~-a~eA~~~GLvD~i 161 (161)
T cd00394 142 EKDLVLT-AQEALEYGLVDAL 161 (161)
T ss_pred cCCcEEc-HHHHHHcCCcCcC
Confidence 7889999 9999999999975
No 99
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.39 E-value=1.1e-12 Score=116.83 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEEC
Q 015541 94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD 173 (405)
Q Consensus 94 ~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~ 173 (405)
.+...+.+.|+.+..++.+ .+.|.+.|+ ++.. ...+...|..++||||+.++
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG-------~~~~--------------------~~~i~~~i~~~~~pvi~~v~ 66 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGG-------DVFA--------------------GLAIYNALKRHKGKVTVKID 66 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCC-------CHHH--------------------HHHHHHHHHhcCCCEEEEEc
Confidence 4567788888888887444 455566653 2211 12455568889999999999
Q ss_pred CccccccceecccccEEEEeCCeeeeCccccccccCCccH---------------HHHHhcCCChH-HHHHHHHhcCCCC
Q 015541 174 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF---------------SYIAAKGPGGG-SVGAYLGMTGKRI 237 (405)
Q Consensus 174 G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~---------------~~~L~r~~G~~-~~a~~l~ltG~~i 237 (405)
|.|.|+|+.|+++||+|+++++++|.++....|..+.... ...+.+..|.. .....++.++..+
T Consensus 67 g~a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l 146 (160)
T cd07016 67 GLAASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWL 146 (160)
T ss_pred chHHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeEC
Confidence 9999999999999999999999999998777665444321 22366667732 2666777777789
Q ss_pred CcHHHHHHcCcccee
Q 015541 238 STPSDALFAGLGTDY 252 (405)
Q Consensus 238 ~~a~eA~~~GLv~~v 252 (405)
+ |+||+++||||++
T Consensus 147 ~-a~eA~~~GliD~v 160 (160)
T cd07016 147 T-AQEAVELGFADEI 160 (160)
T ss_pred c-HHHHHHcCCCCcC
Confidence 9 9999999999975
No 100
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.37 E-value=3.6e-12 Score=118.44 Aligned_cols=87 Identities=18% Similarity=0.124 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEE
Q 015541 92 NLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISL 171 (405)
Q Consensus 92 ~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~ 171 (405)
...|+.+|.++|+.+++|+++++|+|++ +|.|+|+.... ..++.+..+..++|||||+
T Consensus 15 ~~~~~~~l~~~l~~a~~d~~i~~ivl~~-----~s~Gg~~~~~~-----------------~i~~~i~~~~~~~kpvia~ 72 (208)
T cd07023 15 GGIGADSLIEQLRKAREDDSVKAVVLRI-----NSPGGSVVASE-----------------EIYREIRRLRKAKKPVVAS 72 (208)
T ss_pred CCCCHHHHHHHHHHHHhCCCCcEEEEEE-----ECCCCCHHHHH-----------------HHHHHHHHHHhcCCcEEEE
Confidence 3678999999999999999999999987 47799986421 1234556778889999999
Q ss_pred ECCccccccceecccccEEEEeCCeeeeC
Q 015541 172 MDGVTMGFGIGISGHGRYRIVTEKTLLAM 200 (405)
Q Consensus 172 v~G~a~GgG~~lal~~D~riate~a~f~~ 200 (405)
++|.|.|+|+.|+++||++++++.+.|+.
T Consensus 73 v~g~~~s~g~~lA~aaD~i~a~~~s~~g~ 101 (208)
T cd07023 73 MGDVAASGGYYIAAAADKIVANPTTITGS 101 (208)
T ss_pred ECCcchhHHHHHHhhCCEEEECCCCeEEe
Confidence 99999999999999999999999998863
No 101
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.32 E-value=1.6e-11 Score=114.00 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCC--CcEEEEEC
Q 015541 96 DIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYK--KPYISLMD 173 (405)
Q Consensus 96 ~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--kPvIa~v~ 173 (405)
..+|.++|+.+.+|+++++|||++. |.|+|+.... .+...|..++ |||||+++
T Consensus 15 ~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~~~--------------------~l~~~i~~~~~~kpvia~v~ 69 (207)
T TIGR00706 15 PEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVASE--------------------EIYEKLKKLKAKKPVVASMG 69 (207)
T ss_pred HHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHHHH--------------------HHHHHHHHhcCCCCEEEEEC
Confidence 5788999999999999999999874 6778775332 2333556666 99999999
Q ss_pred CccccccceecccccEEEEeCCeeeeCccc------------cccccCC---------ccHH------------------
Q 015541 174 GVTMGFGIGISGHGRYRIVTEKTLLAMPEN------------GIGLFPD---------VGFS------------------ 214 (405)
Q Consensus 174 G~a~GgG~~lal~~D~riate~a~f~~PE~------------~iGl~P~---------~G~~------------------ 214 (405)
|.|.|||+.|+++||.+++++++.++.--+ ++|+-+. .+..
T Consensus 70 g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~ 149 (207)
T TIGR00706 70 GVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNE 149 (207)
T ss_pred CccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999988665322 2333110 0000
Q ss_pred ---HHH---h--cCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChH
Q 015541 215 ---YIA---A--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG 259 (405)
Q Consensus 215 ---~~L---~--r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~ 259 (405)
.|+ . |-+... ...=++.|+.++ +++|++.||||.+...+++.
T Consensus 150 ~~~~f~~~va~~R~~~~~--~~~~~~~~~~~~-~~~A~~~gLvD~i~~~~~~~ 199 (207)
T TIGR00706 150 SYEQFVQVVAKGRNLPVE--DVKKFADGRVFT-GRQALKLRLVDKLGTEDDAL 199 (207)
T ss_pred HHHHHHHHHHhcCCCCHH--HHHHHhcCCccc-HHHHHHcCCCcccCCHHHHH
Confidence 011 1 222211 122346789999 99999999999997655443
No 102
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.14 E-value=2e-10 Score=107.80 Aligned_cols=90 Identities=11% Similarity=0.054 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEE
Q 015541 90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYI 169 (405)
Q Consensus 90 al~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI 169 (405)
.-+..++.+|.+.|+++..|++|++|||+..+ ..| ++.++.++.. .+..+...+||||
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s-~gg-~~~~~~el~~--------------------~i~~~~~~~kpVi 82 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDG-LSG-GLAKLEELRQ--------------------ALERFRASGKPVI 82 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCC-CCC-CHHHHHHHHH--------------------HHHHHHHhCCeEE
Confidence 34567789999999999999999999999987 455 6666665533 3334566799999
Q ss_pred EEECCccccccceecccccEEEEeCCeeeeCcc
Q 015541 170 SLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 202 (405)
Q Consensus 170 a~v~G~a~GgG~~lal~~D~riate~a~f~~PE 202 (405)
|.++| |.+||+.|+++||.++|.+.+.|+..-
T Consensus 83 a~~~~-~~sggy~lasaad~I~a~p~~~vg~iG 114 (222)
T cd07018 83 AYADG-YSQGQYYLASAADEIYLNPSGSVELTG 114 (222)
T ss_pred EEeCC-CCchhhhhhhhCCEEEECCCceEEeec
Confidence 99998 889999999999999999999998843
No 103
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.10 E-value=9.6e-10 Score=99.68 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=95.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEE
Q 015541 90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYI 169 (405)
Q Consensus 90 al~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI 169 (405)
.++..+...+.+.|+.+++++ ++.|+|.=.. -||++.. ...+...|..+++|+|
T Consensus 9 ~I~~~~~~~l~~~l~~a~~~~-~~~ivl~ins-----pGG~v~~--------------------~~~I~~~l~~~~~pvv 62 (178)
T cd07021 9 EIDPGLAAFVERALKEAKEEG-ADAVVLDIDT-----PGGRVDS--------------------ALEIVDLILNSPIPTI 62 (178)
T ss_pred EECHHHHHHHHHHHHHHHhCC-CCeEEEEEEC-----cCCCHHH--------------------HHHHHHHHHhCCCCEE
Confidence 456677888999999999886 6777775332 2344332 2244557889999999
Q ss_pred EEECCccccccceecccccEEEEeCCeeeeCccccccccCCccH--------HHH------HhcCCChH-HHHHHHHhcC
Q 015541 170 SLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF--------SYI------AAKGPGGG-SVGAYLGMTG 234 (405)
Q Consensus 170 a~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~--------~~~------L~r~~G~~-~~a~~l~ltG 234 (405)
++|+|.|.|+|+.|+++||++++++++.|+.++.- +..|+ +.. +.+.-|+. ..+..|+--.
T Consensus 63 a~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~ 138 (178)
T cd07021 63 AYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKD 138 (178)
T ss_pred EEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhh
Confidence 99999999999999999999999999999988543 33333 111 22223432 1344444333
Q ss_pred -------------CCCCcHHHHHHcCccceecCC
Q 015541 235 -------------KRISTPSDALFAGLGTDYVPS 255 (405)
Q Consensus 235 -------------~~i~~a~eA~~~GLv~~vv~~ 255 (405)
-.++ ++||++.|++|.++++
T Consensus 139 ~~v~~~~~~~~~~l~lt-a~eA~~~g~~d~ia~~ 171 (178)
T cd07021 139 IEVPGVGIKGGELLTLT-ADEALKVGYAEGIAGS 171 (178)
T ss_pred cccccccccccceeeeC-HHHHHHhCCeEEEECC
Confidence 2699 9999999999999864
No 104
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.64 E-value=7.4e-08 Score=94.54 Aligned_cols=171 Identities=15% Similarity=0.130 Sum_probs=138.8
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHH
Q 015541 75 NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAE 154 (405)
Q Consensus 75 ~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 154 (405)
.++..++++ |++ |..|.++..+|..-++.+..+..+++.++++.-.+.|+||.|..++.- +.......++..+
T Consensus 65 ~~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vv-----g~h~fspa~~m~L 137 (380)
T KOG1683|consen 65 TGFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVV-----GMHFFSPAHWMQL 137 (380)
T ss_pred cccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhc-----cccccCHHHHHHH
Confidence 378888888 776 999999999999999999999999999999987789999999999876 2334455678888
Q ss_pred HHHHHHHHhCCCcEEEEECCcccccc--ceecccccEEEEe--CCeeeeCccccccc-cCCccHHHHHhcCCChHHHHHH
Q 015541 155 YSLICKISEYKKPYISLMDGVTMGFG--IGISGHGRYRIVT--EKTLLAMPENGIGL-FPDVGFSYIAAKGPGGGSVGAY 229 (405)
Q Consensus 155 ~~l~~~i~~~~kPvIa~v~G~a~GgG--~~lal~~D~riat--e~a~f~~PE~~iGl-~P~~G~~~~L~r~~G~~~~a~~ 229 (405)
.+++...++.+.|+.+++||.+--|| |-++.+|+||+.- ..-..+..++..++ +|.+-.-.+ ....|.. .|-.
T Consensus 138 lEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~-~t~fGf~-~g~~ 215 (380)
T KOG1683|consen 138 LEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSL-ITKFGFR-VGER 215 (380)
T ss_pred HHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHH-HHhcCcc-ccHH
Confidence 99999999999999999999998888 8899999999997 44445677888874 343433333 3344554 5555
Q ss_pred HHhcCCCCCcHHHHHHcCccceecCC
Q 015541 230 LGMTGKRISTPSDALFAGLGTDYVPS 255 (405)
Q Consensus 230 l~ltG~~i~~a~eA~~~GLv~~vv~~ 255 (405)
-+--|.-++ -.+|++-|+++.+.|.
T Consensus 216 ~L~d~~gfd-v~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 216 ALADGVGFD-VAEALAVGLGDEIGPR 240 (380)
T ss_pred HHhhccCcc-HHHHHhhccchhccch
Confidence 556677888 8999999999999985
No 105
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.45 E-value=2.7e-06 Score=76.58 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=96.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEE
Q 015541 90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYI 169 (405)
Q Consensus 90 al~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI 169 (405)
.++..+..-|.+.++.+++| +++.|+|.=. |-||++.... .+...|...++||+
T Consensus 9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v~~~~--------------------~I~~~i~~~~~pvv 62 (172)
T cd07015 9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADAAG--------------------NIVQRIQQSKIPVI 62 (172)
T ss_pred EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCHHHHH--------------------HHHHHHHhcCcCEE
Confidence 45567777888999988875 4677777533 2244443221 23345667899999
Q ss_pred EEEC---CccccccceecccccEEEEeCCeeeeCccccccccCC----cc----HHHHHh------cCCChH-HHHHHHH
Q 015541 170 SLMD---GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD----VG----FSYIAA------KGPGGG-SVGAYLG 231 (405)
Q Consensus 170 a~v~---G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~----~G----~~~~L~------r~~G~~-~~a~~l~ 231 (405)
+.++ |.|..+|.-++++||.+++.+++.++......|..++ .. -++.+. +.-|+. ..+..++
T Consensus 63 ~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v 142 (172)
T cd07015 63 IYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFI 142 (172)
T ss_pred EEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 9999 9999999999999999999999999987765443220 00 011111 122321 2555566
Q ss_pred hcCCCCCcHHHHHHcCccceecCC
Q 015541 232 MTGKRISTPSDALFAGLGTDYVPS 255 (405)
Q Consensus 232 ltG~~i~~a~eA~~~GLv~~vv~~ 255 (405)
-....++ ++||+++|++|+++.+
T Consensus 143 ~~~~~lt-a~EA~~~G~iD~ia~~ 165 (172)
T cd07015 143 TKDLSLT-PEEALKYGVIEVVARD 165 (172)
T ss_pred HhhcCcC-HHHHHHcCCceeeeCC
Confidence 6667799 9999999999999975
No 106
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.42 E-value=1e-06 Score=78.72 Aligned_cols=136 Identities=14% Similarity=0.075 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEE
Q 015541 91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS 170 (405)
Q Consensus 91 l~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa 170 (405)
++..+.+++.+.|..++.++.++.|+|.=. |-||++.. ...+...|...++|+++
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v~~--------------------~~~i~~~i~~~~~~v~~ 63 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDVFA--------------------GMAIYDTIKFIKADVVT 63 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcHHH--------------------HHHHHHHHHhcCCCceE
Confidence 457889999999999999877777776533 22344321 12344567778999999
Q ss_pred EECCccccccceeccccc--EEEEeCCeeeeCccccccccCCccHHH---------------HHhcCCChH-HHHHHHHh
Q 015541 171 LMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAKGPGGG-SVGAYLGM 232 (405)
Q Consensus 171 ~v~G~a~GgG~~lal~~D--~riate~a~f~~PE~~iGl~P~~G~~~---------------~L~r~~G~~-~~a~~l~l 232 (405)
.+.|.|.++|.-|+++|| .|++.++++|.+....-|......-.. .+.+.-|.. ..-..++-
T Consensus 64 ~~~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~ 143 (162)
T cd07013 64 IIDGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLE 143 (162)
T ss_pred EEEeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence 999999999999999999 577777777765332212110000000 111112311 12333444
Q ss_pred cCCCCCcHHHHHHcCcccee
Q 015541 233 TGKRISTPSDALFAGLGTDY 252 (405)
Q Consensus 233 tG~~i~~a~eA~~~GLv~~v 252 (405)
.+.-++ |+||+++||||++
T Consensus 144 ~~~~~s-a~eA~~~GliD~i 162 (162)
T cd07013 144 RDTWLS-AREAVEYGFADTI 162 (162)
T ss_pred CCcccc-HHHHHHcCCCCcC
Confidence 455568 9999999999975
No 107
>PRK10949 protease 4; Provisional
Probab=98.39 E-value=5.8e-06 Score=88.40 Aligned_cols=163 Identities=17% Similarity=0.128 Sum_probs=102.8
Q ss_pred eCcEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchH
Q 015541 74 PNGVAVITLDRP-----KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP 148 (405)
Q Consensus 74 ~~~v~~ItLnrp-----~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 148 (405)
++.|++|.++.+ ...+.++. +.+.+.|+.+..|++||+|||+=..| ||....
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp-----GGs~~a--------------- 381 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP-----GGSVTA--------------- 381 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC-----CCcHHH---------------
Confidence 456888877532 22234554 45778899999999999999987643 222211
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccc------------cccccCCccHHH-
Q 015541 149 KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN------------GIGLFPDVGFSY- 215 (405)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~------------~iGl~P~~G~~~- 215 (405)
....++.+..+....|||||.+.|.|.-||.-++++||.++|.+.+..+---+ ++|+-++.-.+-
T Consensus 382 --se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~ 459 (618)
T PRK10949 382 --SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSP 459 (618)
T ss_pred --HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccc
Confidence 11223344445667899999999999999999999999999999765332111 244432211110
Q ss_pred ----------------------------HHh-----cCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHH
Q 015541 216 ----------------------------IAA-----KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLK 262 (405)
Q Consensus 216 ----------------------------~L~-----r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~ 262 (405)
|+. |-+... -.+-+..|+.++ |++|++.||||++-.-++..+.+
T Consensus 460 ~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~--~v~~ia~Grv~t-g~~A~~~GLVD~lG~~~~ai~~a 536 (618)
T PRK10949 460 LADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPE--QIDKIAQGHVWT-GQDAKANGLVDSLGDFDDAVAKA 536 (618)
T ss_pred cCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH--HHHHHhcCCccc-HHHHHHcCCCccCCCHHHHHHHH
Confidence 111 112211 122345799999 99999999999996544433333
Q ss_pred HH
Q 015541 263 EA 264 (405)
Q Consensus 263 ~~ 264 (405)
.+
T Consensus 537 ~~ 538 (618)
T PRK10949 537 AE 538 (618)
T ss_pred HH
Confidence 33
No 108
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.29 E-value=5.3e-06 Score=76.70 Aligned_cols=134 Identities=15% Similarity=0.086 Sum_probs=82.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--eeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCC
Q 015541 89 NAMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK 166 (405)
Q Consensus 89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl--~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~k 166 (405)
..++..+.+.+...|..++.++..+-|.| .+.| ||+.. ...+...|...+.
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG-------G~v~~--------------------g~~I~d~i~~~~~ 90 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG-------GSVTA--------------------GLAIYDTMQFIKP 90 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC-------CcHHH--------------------HHHHHHHHHhcCC
Confidence 45678899999999998886544333333 3443 34322 1133345667788
Q ss_pred cEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHH----------------------HHHhcCCChH
Q 015541 167 PYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS----------------------YIAAKGPGGG 224 (405)
Q Consensus 167 PvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~----------------------~~L~r~~G~~ 224 (405)
|+++.+.|.|.+.|.-|+++++ ++.+|.+|++.+++.+..+++ ..+....|..
T Consensus 91 ~v~t~~~G~aaS~a~~I~~ag~-----~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~ 165 (200)
T PRK00277 91 DVSTICIGQAASMGAFLLAAGA-----KGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQP 165 (200)
T ss_pred CEEEEEEeEeccHHHHHHhcCC-----CCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 9999999999999999888742 334444444444544333221 1122222321
Q ss_pred -HHHHHHHhcCCCCCcHHHHHHcCccceecCC
Q 015541 225 -SVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255 (405)
Q Consensus 225 -~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~ 255 (405)
.....++-.+.-++ |+||+++||||+++.+
T Consensus 166 ~~~i~~~~~~~~~ls-a~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 166 LEKIEKDTDRDNFMS-AEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHHHHHHhhCCcccc-HHHHHHcCCccEEeec
Confidence 13333444456788 9999999999999975
No 109
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.17 E-value=0.00016 Score=69.29 Aligned_cols=140 Identities=18% Similarity=0.128 Sum_probs=93.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541 88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167 (405)
Q Consensus 88 ~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP 167 (405)
.-+++++-.+...+.++.+.+. ++-+|-|.=. ++++. |.+-. ..........+...+....+|
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDt-pGa~~-g~~aE--------------~~G~~~~ia~~~~~~s~~~VP 138 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKF-GRPVVTFINT-AGAYP-GVGAE--------------ERGQGEAIARNLMEMSDLKVP 138 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEEC-CCcCC-CHhHH--------------hccHHHHHHHHHHHHhCCCCC
Confidence 4678899999999999888776 3555555433 23443 33211 001223445666778899999
Q ss_pred EEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcC
Q 015541 168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 247 (405)
Q Consensus 168 vIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~G 247 (405)
+|++|-|.|.|||......||++++.+++.|+. .++-|++..+-+-......+.+.+ +++ +.++++.|
T Consensus 139 ~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~~~a~~aa~~~----~~~-a~~l~~~g 206 (256)
T PRK12319 139 IIAIIIGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDGSRATEAAELM----KIT-AGELLEMG 206 (256)
T ss_pred EEEEEeCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCcccHHHHHHHc----CCC-HHHHHHCC
Confidence 999999999888887777999999999988775 233333333322211111333332 778 99999999
Q ss_pred ccceecCCC
Q 015541 248 LGTDYVPSG 256 (405)
Q Consensus 248 Lv~~vv~~~ 256 (405)
+||+|||..
T Consensus 207 ~iD~ii~e~ 215 (256)
T PRK12319 207 VVDKVIPEH 215 (256)
T ss_pred CCcEecCCC
Confidence 999999853
No 110
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.13 E-value=0.00018 Score=70.56 Aligned_cols=139 Identities=12% Similarity=0.080 Sum_probs=93.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541 88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167 (405)
Q Consensus 88 ~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP 167 (405)
.-+++++-.+...+.++.+++.. +-+|-|-=. +++++ |.+-.+ .............+....+|
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f~-lPIItlvDT-pGA~~-G~~AE~--------------~G~~~aiar~l~~~a~~~VP 194 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKFG-LPILTFIDT-PGAWA-GVKAEK--------------LGQGEAIAVNLREMFSFEVP 194 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC-CCcCc-CHHHHH--------------HhHHHHHHHHHHHHHcCCCC
Confidence 46788999999999999888753 445555333 23554 422111 01123334556667889999
Q ss_pred EEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcC
Q 015541 168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 247 (405)
Q Consensus 168 vIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~G 247 (405)
+|++|-|.|-|||.-....||++++.+++.|+. +-|.++++.++. -. ..+.+ +-..-+++ |+|.++.|
T Consensus 195 ~IsVViGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~-d~---~~a~~-aA~~~~it-a~dL~~~g 262 (322)
T CHL00198 195 IICTIIGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWK-DS---KKSLD-AAEALKIT-SEDLKVLG 262 (322)
T ss_pred EEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhc-ch---hhHHH-HHHHcCCC-HHHHHhCC
Confidence 999999999888765445699999999998875 334444444443 22 13333 23346788 99999999
Q ss_pred ccceecCC
Q 015541 248 LGTDYVPS 255 (405)
Q Consensus 248 Lv~~vv~~ 255 (405)
+||+|+|.
T Consensus 263 iiD~ii~E 270 (322)
T CHL00198 263 IIDEIIPE 270 (322)
T ss_pred CCeEeccC
Confidence 99999984
No 111
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.11 E-value=0.00029 Score=69.18 Aligned_cols=139 Identities=16% Similarity=0.093 Sum_probs=90.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541 88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167 (405)
Q Consensus 88 ~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP 167 (405)
.-+++++-.+...+.++.+++- .+-+|-|.=. +++++ |.+..+. ........+...+....+|
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDT-pGa~~-g~~aE~~--------------G~~~aia~~l~a~s~~~VP 191 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDT-PGAYP-GIGAEER--------------GQSEAIARNLREMARLGVP 191 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEEC-CCCCC-CHHHHHH--------------HHHHHHHHHHHHHHcCCCC
Confidence 4678899999999999888875 3555555433 23443 3332111 1123345666678899999
Q ss_pred EEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcC
Q 015541 168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 247 (405)
Q Consensus 168 vIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~G 247 (405)
+|++|-|.|.|||......||++++.+++.++. +++-|+...|-+-......+.+ -..++ +.++++.|
T Consensus 192 ~IsVViGeggsGGAla~~~aD~v~m~~~a~~sV-------isPEg~a~Il~kd~~~a~~aae----~~~~t-a~~l~~~G 259 (316)
T TIGR00513 192 VICTVIGEGGSGGALAIGVGDKVNMLEYSTYSV-------ISPEGCAAILWKDASKAPKAAE----AMKIT-APDLKELG 259 (316)
T ss_pred EEEEEecccccHHHhhhccCCEEEEecCceEEe-------cCHHHHHHHhccchhhHHHHHH----HccCC-HHHHHHCC
Confidence 999999999777765444699999999887764 3333444334332111112222 25678 99999999
Q ss_pred ccceecCC
Q 015541 248 LGTDYVPS 255 (405)
Q Consensus 248 Lv~~vv~~ 255 (405)
+||.|+|.
T Consensus 260 ~iD~II~e 267 (316)
T TIGR00513 260 LIDSIIPE 267 (316)
T ss_pred CCeEeccC
Confidence 99999984
No 112
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.05 E-value=0.00043 Score=69.81 Aligned_cols=138 Identities=15% Similarity=0.102 Sum_probs=91.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 015541 89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY 168 (405)
Q Consensus 89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv 168 (405)
.+++++-.+...+.++.++.. ++-+|-|.=.. +++ .|.+-.+ .........+...+....+|+
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTp-GA~-pG~~AEe--------------~Gqa~aIAr~l~ams~l~VPi 262 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTP-GAY-AGIKAEE--------------LGQGEAIAFNLREMFGLRVPI 262 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCC-CcC-CCHHHHH--------------HhHHHHHHHHHHHHhcCCCCE
Confidence 568899999999999998876 34555554332 233 3333221 112233456677788999999
Q ss_pred EEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCc
Q 015541 169 ISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL 248 (405)
Q Consensus 169 Ia~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GL 248 (405)
|++|-|.+-|||......||++++.+++.++. +-|.++++.++....-. ..+.+ .-.++ |.++++.|+
T Consensus 263 ISVViGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A-~eAAe----alkit-A~dL~~~Gi 330 (431)
T PLN03230 263 IATVIGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAA-PKAAE----ALRIT-AAELVKLGV 330 (431)
T ss_pred EEEEeCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccch-HHHHH----HcCCC-HHHHHhCCC
Confidence 99999999666644444689999999987664 33445555444332211 12333 34899 999999999
Q ss_pred cceecCC
Q 015541 249 GTDYVPS 255 (405)
Q Consensus 249 v~~vv~~ 255 (405)
||+|||.
T Consensus 331 ID~II~E 337 (431)
T PLN03230 331 VDEIVPE 337 (431)
T ss_pred CeEeccC
Confidence 9999984
No 113
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.03 E-value=2.7e-05 Score=70.21 Aligned_cols=134 Identities=16% Similarity=0.058 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEE
Q 015541 91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS 170 (405)
Q Consensus 91 l~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa 170 (405)
++.++..++...+..+..++..+.|+|.=.. -|||+..- ..+...|...+.|+++
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inS-----pGG~v~~~--------------------~~i~~~l~~~~~~v~t 72 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYINS-----PGGSVTAG--------------------LAIYDTMQYIKPPVST 72 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEEC-----CCCCHHHH--------------------HHHHHHHHhcCCCEEE
Confidence 4678889999999999987665555554221 23343321 1333456677899999
Q ss_pred EECCccccccceeccccc--EEEEeCCeeeeCccccccccCCccHHH-----------------HHhcCCChH-HHHHHH
Q 015541 171 LMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY-----------------IAAKGPGGG-SVGAYL 230 (405)
Q Consensus 171 ~v~G~a~GgG~~lal~~D--~riate~a~f~~PE~~iGl~P~~G~~~-----------------~L~r~~G~~-~~a~~l 230 (405)
.+.|.|.++|.-+++++| .|++.+++.|.+-+...+..-. ... .+....|.. ..-..+
T Consensus 73 ~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~--~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~ 150 (171)
T cd07017 73 ICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQ--ASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKD 150 (171)
T ss_pred EEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999 7999999999887766544222 111 111112321 133344
Q ss_pred HhcCCCCCcHHHHHHcCcccee
Q 015541 231 GMTGKRISTPSDALFAGLGTDY 252 (405)
Q Consensus 231 ~ltG~~i~~a~eA~~~GLv~~v 252 (405)
+-.+.-++ |+||+++||||+|
T Consensus 151 ~~~~~~lt-a~EA~e~GiiD~V 171 (171)
T cd07017 151 TDRDRYMS-AEEAKEYGLIDKI 171 (171)
T ss_pred hhCCcccc-HHHHHHcCCCccC
Confidence 44677788 9999999999975
No 114
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.02 E-value=6.9e-05 Score=69.67 Aligned_cols=137 Identities=14% Similarity=0.061 Sum_probs=93.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--eeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCC
Q 015541 89 NAMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK 166 (405)
Q Consensus 89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl--~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~k 166 (405)
.-++..+..++...|..++..+..+.|.| .+.| ||+..- ..+...|..++.
T Consensus 42 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG-------G~v~~g--------------------~~I~d~i~~~~~ 94 (207)
T PRK12553 42 GQVDDASANDVMAQLLVLESIDPDRDITLYINSPG-------GSVTAG--------------------DAIYDTIQFIRP 94 (207)
T ss_pred ceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC-------CcHHHH--------------------HHHHHHHHhcCC
Confidence 35678999999999999987543344333 4443 443221 234446777888
Q ss_pred cEEEEECCccccccceeccccc--EEEEeCCeeeeCccccc-cccCCccHH------------------HHHhcCCChH-
Q 015541 167 PYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGI-GLFPDVGFS------------------YIAAKGPGGG- 224 (405)
Q Consensus 167 PvIa~v~G~a~GgG~~lal~~D--~riate~a~f~~PE~~i-Gl~P~~G~~------------------~~L~r~~G~~- 224 (405)
|+++.+.|.|.+.|.-|+++|| .|++.+++.|.+-.... |. ..|-. ..+.+.-|..
T Consensus 95 ~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~ 172 (207)
T PRK12553 95 DVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSV 172 (207)
T ss_pred CcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999998 59999999988866543 21 11211 1122223321
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCccceecCC
Q 015541 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255 (405)
Q Consensus 225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~ 255 (405)
.....++-.+.-++ |+||+++||||+++.+
T Consensus 173 e~i~~~~~~~~~lt-a~EA~e~GliD~I~~~ 202 (207)
T PRK12553 173 EKIRKDTDRDKWLT-AEEAKDYGLVDQIITS 202 (207)
T ss_pred HHHHHHHhcCcccc-HHHHHHcCCccEEcCc
Confidence 13344555677898 9999999999999965
No 115
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.97 E-value=0.00054 Score=67.33 Aligned_cols=139 Identities=15% Similarity=0.106 Sum_probs=92.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541 88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167 (405)
Q Consensus 88 ~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP 167 (405)
.-+++++-.+...+.++.+++. ++-+|-|.=. +++++ |.+-.+ .........+...+....+|
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDT-pGa~~-G~~aE~--------------~G~~~aia~~l~~~a~~~VP 191 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDT-PGAYP-GIGAEE--------------RGQSEAIARNLREMARLKVP 191 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeC-CCCCC-CHHHHh--------------ccHHHHHHHHHHHHhCCCCC
Confidence 4568899999999999888875 4555555433 23444 432210 01234445677788999999
Q ss_pred EEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcC
Q 015541 168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 247 (405)
Q Consensus 168 vIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~G 247 (405)
+|++|-|.+.|||.-....||++++.+++.|+. +++-|++..|-+-.. .+.+.+= ...++ +.++++.|
T Consensus 192 ~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~sv-------isPEg~a~Il~~~~~---~a~~aae-~~~it-a~~l~~~g 259 (319)
T PRK05724 192 IICTVIGEGGSGGALAIGVGDRVLMLEYSTYSV-------ISPEGCASILWKDAS---KAPEAAE-AMKIT-AQDLKELG 259 (319)
T ss_pred EEEEEeCCccHHHHHHHhccCeeeeecCceEee-------cCHHHHHHHHhcCch---hHHHHHH-HcCCC-HHHHHHCC
Confidence 999999999777764444599999988887654 444444444433322 3333222 55688 99999999
Q ss_pred ccceecCC
Q 015541 248 LGTDYVPS 255 (405)
Q Consensus 248 Lv~~vv~~ 255 (405)
+||.|+|.
T Consensus 260 ~iD~II~E 267 (319)
T PRK05724 260 IIDEIIPE 267 (319)
T ss_pred CceEeccC
Confidence 99999984
No 116
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.90 E-value=0.0008 Score=71.96 Aligned_cols=139 Identities=12% Similarity=0.073 Sum_probs=92.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541 88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167 (405)
Q Consensus 88 ~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP 167 (405)
.-+++++-.+...+.++.++... +-+|-|-=. +++++ |.+..+. ............+....+|
T Consensus 220 fG~~~peGyRKAlRlmkLAekfg-LPIVtLVDT-pGA~p-G~~AEe~--------------Gq~~aIArnl~amasl~VP 282 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHHG-FPIVTFIDT-PGAYA-DLKSEEL--------------GQGEAIAHNLRTMFGLKVP 282 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEEC-CCcCC-CchhHHH--------------hHHHHHHHHHHHHhCCCCC
Confidence 45788888898999888887753 445544322 23444 3332221 1123445666778899999
Q ss_pred EEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcC
Q 015541 168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 247 (405)
Q Consensus 168 vIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~G 247 (405)
+|++|-|.|.|||.-....||++++.+++.|+. +-|.++++..+ +-.. .+.+ +-..-+|+ |+|.+++|
T Consensus 283 ~ISVViGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILw-kd~~---~A~e-AAe~lkiT-a~dL~~lG 350 (762)
T PLN03229 283 IVSIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILW-KSAK---AAPK-AAEKLRIT-AQELCRLQ 350 (762)
T ss_pred EEEEEeCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHh-cCcc---cHHH-HHHHcCCC-HHHHHhCC
Confidence 999999999888876666799999998887554 23444444433 3322 2332 33456788 99999999
Q ss_pred ccceecCC
Q 015541 248 LGTDYVPS 255 (405)
Q Consensus 248 Lv~~vv~~ 255 (405)
+||+|+|.
T Consensus 351 iiD~IIpE 358 (762)
T PLN03229 351 IADGIIPE 358 (762)
T ss_pred CCeeeccC
Confidence 99999984
No 117
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.84 E-value=0.00024 Score=65.58 Aligned_cols=138 Identities=16% Similarity=0.061 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEE--EeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541 90 AMNLDMDIKYKSFLDEWESDPRVKCVL--IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167 (405)
Q Consensus 90 al~~~m~~~L~~~l~~~~~d~~v~~vv--l~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP 167 (405)
.++..+...+.+.|..++..+..+.|+ |.+.| ||+.. ...+...|...+.|
T Consensus 31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG-------G~v~a--------------------g~aI~d~i~~~~~~ 83 (197)
T PRK14512 31 EINKDLSELFQEKILLLEALDSKKPIFVYIDSEG-------GDIDA--------------------GFAIFNMIRFVKPK 83 (197)
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC-------CCHHH--------------------HHHHHHHHHhCCCC
Confidence 356788888888888877622233333 34444 44321 12344467778999
Q ss_pred EEEEECCccccccceecccccE--EEEeCCeeeeCccccccccCCccHH----HH-----------HhcCCChH-HHHHH
Q 015541 168 YISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFS----YI-----------AAKGPGGG-SVGAY 229 (405)
Q Consensus 168 vIa~v~G~a~GgG~~lal~~D~--riate~a~f~~PE~~iGl~P~~G~~----~~-----------L~r~~G~~-~~a~~ 229 (405)
|++.++|.|.+.|.-|+++||. |++.++++|-+-...-|+.-...-. .. ++..-|.. .....
T Consensus 84 V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~ 163 (197)
T PRK14512 84 VFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEK 163 (197)
T ss_pred EEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 9999999999999999999985 8999988875544332221111100 01 11111211 12233
Q ss_pred HHhcCCCCCcHHHHHHcCccceecCC
Q 015541 230 LGMTGKRISTPSDALFAGLGTDYVPS 255 (405)
Q Consensus 230 l~ltG~~i~~a~eA~~~GLv~~vv~~ 255 (405)
++-....++ |+||+++||||+|++.
T Consensus 164 ~~~~d~~lt-a~EA~~yGliD~I~~~ 188 (197)
T PRK14512 164 DTDRDFWLD-SSSAVKYGLVFEVVET 188 (197)
T ss_pred hhhcCcccC-HHHHHHcCCccEeecC
Confidence 333345688 9999999999999975
No 118
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.81 E-value=0.00018 Score=71.25 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCc
Q 015541 96 DIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGV 175 (405)
Q Consensus 96 ~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~ 175 (405)
.+.+.+.|+.+..|+++++|+|.=..| ||..-. -...++.+.++..-. ||++.|+++
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~inSP-----GG~v~a-----------------s~~i~~~l~~l~~~~-PV~v~v~~~ 138 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRINSP-----GGSVVA-----------------SELIARALKRLRAKK-PVVVSVGGY 138 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEECc-----CCchhH-----------------HHHHHHHHHHHhhcC-CEEEEECCe
Confidence 455677888899999999999974332 222211 112334444455544 999999999
Q ss_pred cccccceecccccEEEEeCCeeee
Q 015541 176 TMGFGIGISGHGRYRIVTEKTLLA 199 (405)
Q Consensus 176 a~GgG~~lal~~D~riate~a~f~ 199 (405)
|+.||..+|++||.++|++.+..|
T Consensus 139 AASGGY~IA~aAd~I~a~p~si~G 162 (317)
T COG0616 139 AASGGYYIALAADKIVADPSSITG 162 (317)
T ss_pred ecchhhhhhccCCEEEecCCceee
Confidence 999999999999999999998755
No 119
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.78 E-value=0.00015 Score=71.63 Aligned_cols=158 Identities=13% Similarity=0.013 Sum_probs=92.3
Q ss_pred eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHH
Q 015541 74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA 153 (405)
Q Consensus 74 ~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (405)
++.|++|.++.+=..+. ...+.+++...+.....+ .+|||+-.+| ||.+.....
T Consensus 89 ~~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLridSp-----GG~v~~s~~----------------- 142 (330)
T PRK11778 89 KPRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLESP-----GGVVHGYGL----------------- 142 (330)
T ss_pred CCeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEeCC-----CCchhHHHH-----------------
Confidence 35788888885522111 123445666655555443 4677765543 232221100
Q ss_pred HHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCcccc------------ccccC---------Ccc
Q 015541 154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG------------IGLFP---------DVG 212 (405)
Q Consensus 154 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~------------iGl~P---------~~G 212 (405)
....+.++....||+|+.+++.|.-||..++++||.++|.+.+..+---+. +|+-+ +.+
T Consensus 143 a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~ 222 (330)
T PRK11778 143 AASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTL 222 (330)
T ss_pred HHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCC
Confidence 111133466778999999999999999999999999999998876543321 22210 000
Q ss_pred HH---------------------HHHhcCC-ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCh
Q 015541 213 FS---------------------YIAAKGP-GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 258 (405)
Q Consensus 213 ~~---------------------~~L~r~~-G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l 258 (405)
.. .|+...- +++..-.+-+.+|+.++ |++|++.||||++...+++
T Consensus 223 ~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~-g~~Al~~GLVD~Ig~~dd~ 289 (330)
T PRK11778 223 TLFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWY-GQQALELGLVDEIQTSDDY 289 (330)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcC-HHHHHHCCCCCcCCCHHHH
Confidence 00 0110000 10012233456899999 9999999999999765444
No 120
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.72 E-value=0.0013 Score=63.54 Aligned_cols=152 Identities=15% Similarity=0.065 Sum_probs=90.7
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcC----CCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHH
Q 015541 76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESD----PRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVF 151 (405)
Q Consensus 76 ~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d----~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 151 (405)
.|.++-.+.--..-++....-+.+.++++.+.+| ..+-+|.|.-+| ++ -+.+-.. .... .
T Consensus 60 ~v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg-Ga-----RlqEg~~---------~L~~-~ 123 (274)
T TIGR03133 60 PVVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG-GV-----RLQEANA---------GLIA-I 123 (274)
T ss_pred EEEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC-Cc-----ChhhhHH---------HHHH-H
Confidence 3555555555455678888888888888888652 123356665443 22 2222111 0001 1
Q ss_pred HHHHHHHHHHHhCCCcEEEEECCc--cccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH-HHHH
Q 015541 152 TAEYSLICKISEYKKPYISLMDGV--TMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG-SVGA 228 (405)
Q Consensus 152 ~~~~~l~~~i~~~~kPvIa~v~G~--a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~-~~a~ 228 (405)
...+..+..+... .|+|+++-|. |.||+..++..||++|+++++++++. +....-...|.. --..
T Consensus 124 a~i~~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~a-----------GP~VIe~~~G~e~~~~~ 191 (274)
T TIGR03133 124 AEIMRAILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLS-----------GPEVIEQEAGVEEFDSR 191 (274)
T ss_pred HHHHHHHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEecc-----------CHHHHHHhcCCCccCHH
Confidence 1222233344455 9999999999 89999999999999999998877761 111111122210 0122
Q ss_pred HHHhcCCCCCcHHHHHHcCccceecCCC
Q 015541 229 YLGMTGKRISTPSDALFAGLGTDYVPSG 256 (405)
Q Consensus 229 ~l~ltG~~i~~a~eA~~~GLv~~vv~~~ 256 (405)
+-.|.-+.+. ++.....|++|.+++++
T Consensus 192 d~~l~~~~lG-G~~~~~sG~~D~~v~dd 218 (274)
T TIGR03133 192 DRALVWRTTG-GKHRFLSGDADVLVEDD 218 (274)
T ss_pred Hhcccccccc-hHhHhhcccceEEeCCH
Confidence 2333344566 67888899999999874
No 121
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=97.69 E-value=9.4e-05 Score=67.13 Aligned_cols=137 Identities=16% Similarity=0.114 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 015541 91 MNLDMDIKYKSFLDEWESDPRVK--CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY 168 (405)
Q Consensus 91 l~~~m~~~L~~~l~~~~~d~~v~--~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv 168 (405)
++.++...+...|..++..+..+ .|.|.+.| ||+.. ...+...|..++.|+
T Consensus 25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG-------G~v~~--------------------g~~i~~~i~~~~~~v 77 (182)
T PF00574_consen 25 IDEESANRLISQLLYLENEDKNKPINIYINSPG-------GDVDA--------------------GLAIYDAIRSSKAPV 77 (182)
T ss_dssp BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE-------BCHHH--------------------HHHHHHHHHHSSSEE
T ss_pred cCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC-------CccHH--------------------HHHHHHHHHhcCCCe
Confidence 57889999998887774322222 33445554 44432 224555788999999
Q ss_pred EEEECCccccccceecccccE--EEEeCCeeeeCccccccccCCccHHH----HHh-----------cCCChH-HHHHHH
Q 015541 169 ISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY----IAA-----------KGPGGG-SVGAYL 230 (405)
Q Consensus 169 Ia~v~G~a~GgG~~lal~~D~--riate~a~f~~PE~~iGl~P~~G~~~----~L~-----------r~~G~~-~~a~~l 230 (405)
++.+.|.|.+.|.-++++|+. |++.+++.|.+-+...+..-...-.. .+. ...|.. ..-..+
T Consensus 78 ~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~ 157 (182)
T PF00574_consen 78 TTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEEL 157 (182)
T ss_dssp EEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred EEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 999999999999999999999 99999999999887655532111100 111 111211 122222
Q ss_pred HhcCCCCCcHHHHHHcCccceecCC
Q 015541 231 GMTGKRISTPSDALFAGLGTDYVPS 255 (405)
Q Consensus 231 ~ltG~~i~~a~eA~~~GLv~~vv~~ 255 (405)
+-...-++ |+||+++||||+|+.+
T Consensus 158 ~~~~~~l~-a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 158 MDRDTWLS-AEEALEYGIIDEIIES 181 (182)
T ss_dssp CSSTEEEE-HHHHHHHTSSSEEESS
T ss_pred HhCCcccc-HHHHHHcCCCCEeccC
Confidence 22334477 9999999999999853
No 122
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=97.69 E-value=0.00053 Score=62.97 Aligned_cols=140 Identities=14% Similarity=0.036 Sum_probs=87.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 015541 89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY 168 (405)
Q Consensus 89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv 168 (405)
..++..+.+++...|..++.++..+-|.|.=. |-|||+..- ..+...|...+.|+
T Consensus 33 g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~In-----SpGG~v~~g--------------------~~I~d~l~~~~~~v 87 (191)
T TIGR00493 33 GEVNDSVANLIVAQLLFLEAEDPEKDIYLYIN-----SPGGSITAG--------------------LAIYDTMQFIKPDV 87 (191)
T ss_pred cEEChHHHHHHHHHHHHhhccCCCCCEEEEEE-----CCCCCHHHH--------------------HHHHHHHHhcCCCE
Confidence 34567788888888888887554444444322 124454211 13333566677788
Q ss_pred EEEECCccccccceeccccc--EEEEeCCeeeeCcccccccc---CCccH-H-----------HHHhcCCChH-HHHHHH
Q 015541 169 ISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLF---PDVGF-S-----------YIAAKGPGGG-SVGAYL 230 (405)
Q Consensus 169 Ia~v~G~a~GgG~~lal~~D--~riate~a~f~~PE~~iGl~---P~~G~-~-----------~~L~r~~G~~-~~a~~l 230 (405)
.+.+.|.|.+.|.-|++++| .|++.++++|.+-+..-|.. -+..- . ..+.+.-|.. .....+
T Consensus 88 ~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~ 167 (191)
T TIGR00493 88 STICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKD 167 (191)
T ss_pred EEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 88889999999988888765 69999999988866543321 11110 0 0122222321 133444
Q ss_pred HhcCCCCCcHHHHHHcCccceecC
Q 015541 231 GMTGKRISTPSDALFAGLGTDYVP 254 (405)
Q Consensus 231 ~ltG~~i~~a~eA~~~GLv~~vv~ 254 (405)
+-.+..++ |+||+++||||+++.
T Consensus 168 ~~~~~~lt-a~EA~~~GliD~ii~ 190 (191)
T TIGR00493 168 TERDFFMS-AEEAKEYGLIDSVLT 190 (191)
T ss_pred hhCCccCc-HHHHHHcCCccEEec
Confidence 45566788 999999999999974
No 123
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=97.65 E-value=0.00069 Score=62.62 Aligned_cols=139 Identities=11% Similarity=0.050 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEE--EeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCC
Q 015541 89 NAMNLDMDIKYKSFLDEWESDPRVKCVL--IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK 166 (405)
Q Consensus 89 Nal~~~m~~~L~~~l~~~~~d~~v~~vv--l~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~k 166 (405)
.-+|.++.+++...|-.++.++..+-|. |.+.| ||+.. ...+...|...+.
T Consensus 37 ~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG-------G~v~~--------------------g~aIyd~m~~~~~ 89 (200)
T CHL00028 37 QEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG-------GSVIS--------------------GLAIYDTMQFVKP 89 (200)
T ss_pred CeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC-------cchhh--------------------HHHHHHHHHhcCC
Confidence 4578899999999998887544334333 34544 33321 1234456778899
Q ss_pred cEEEEECCccccccceeccccc--EEEEeCCeeeeCccccccccCCccHHH-----------------HHhcCCChH-HH
Q 015541 167 PYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY-----------------IAAKGPGGG-SV 226 (405)
Q Consensus 167 PvIa~v~G~a~GgG~~lal~~D--~riate~a~f~~PE~~iGl~P~~G~~~-----------------~L~r~~G~~-~~ 226 (405)
||.+.+.|.|.+.|.-|++++| .|++.++++|-+-....|+.-+- ++. .+.+.-|.. ..
T Consensus 90 ~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~-a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~ 168 (200)
T CHL00028 90 DVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQ-ASEFVLEAEELLKLRETITRVYAQRTGKPLWV 168 (200)
T ss_pred CEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 9999999999999999999998 69999999988876654522111 111 111111211 12
Q ss_pred HHHHHhcCCCCCcHHHHHHcCccceecCCC
Q 015541 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSG 256 (405)
Q Consensus 227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~ 256 (405)
-.+++-...-++ |+||+++||||+|+.+.
T Consensus 169 i~~~~~r~~~lt-a~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 169 ISEDMERDVFMS-ATEAKAYGIVDLVAVNN 197 (200)
T ss_pred HHHHhhcCccCC-HHHHHHcCCCcEEeecC
Confidence 223333344588 99999999999999754
No 124
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.40 E-value=0.0017 Score=63.48 Aligned_cols=108 Identities=18% Similarity=0.130 Sum_probs=71.7
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHH
Q 015541 76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDP----RVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVF 151 (405)
Q Consensus 76 ~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~----~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 151 (405)
.|.++-.+.-=..-++.....+.+..+++.+.++. -+-+|+|.-+| + +-+.+-.. .... .
T Consensus 69 ~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG-G-----aRlqEg~~---------~L~~-~ 132 (301)
T PRK07189 69 PVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG-G-----VRLQEANA---------GLAA-I 132 (301)
T ss_pred EEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-C-----cCccchHH---------HHHH-H
Confidence 35566666555667888888899999998887764 15566665443 2 22221110 0000 1
Q ss_pred HHHHHHHHHHHhCCCcEEEEECCc--cccccceecccccEEEEeCCeeeeC
Q 015541 152 TAEYSLICKISEYKKPYISLMDGV--TMGFGIGISGHGRYRIVTEKTLLAM 200 (405)
Q Consensus 152 ~~~~~l~~~i~~~~kPvIa~v~G~--a~GgG~~lal~~D~riate~a~f~~ 200 (405)
...+..+..+... +|+|+++-|. |+||+..++..||++|+++++.+++
T Consensus 133 a~i~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl 182 (301)
T PRK07189 133 AEIMRAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL 182 (301)
T ss_pred HHHHHHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence 1222333344555 9999999999 9999999999999999999887776
No 125
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.37 E-value=0.0019 Score=60.50 Aligned_cols=138 Identities=9% Similarity=0.010 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHHHHHHHHhc---CCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCC
Q 015541 89 NAMNLDMDIKYKSFLDEWES---DPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYK 165 (405)
Q Consensus 89 Nal~~~m~~~L~~~l~~~~~---d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 165 (405)
-.++..+.+.+...|..++. +.++. |.|.+.|+ ++.. ...+...|...+
T Consensus 61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~-lyINSpGG-------sv~a--------------------GlaIyd~m~~~~ 112 (221)
T PRK14514 61 TQIDDYTANTIQAQLLYLDSVDPGKDIS-IYINSPGG-------SVYA--------------------GLGIYDTMQFIS 112 (221)
T ss_pred CEEcHHHHHHHHHHHHHHhccCCCCCEE-EEEECCCc-------chhh--------------------HHHHHHHHHhcC
Confidence 45678888888887777764 23343 33455552 2211 113344677788
Q ss_pred CcEEEEECCccccccceecccccE--EEEeCCeeeeCccccccccCCccHH----H-----------HHhcCCChH-HHH
Q 015541 166 KPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFS----Y-----------IAAKGPGGG-SVG 227 (405)
Q Consensus 166 kPvIa~v~G~a~GgG~~lal~~D~--riate~a~f~~PE~~iGl~P~~G~~----~-----------~L~r~~G~~-~~a 227 (405)
-||.+.+.|.|.+.|.-|++++|. |++.++++|-+-...-|......-. . .+++..|.. ..-
T Consensus 113 ~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I 192 (221)
T PRK14514 113 SDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKV 192 (221)
T ss_pred CCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 899999999999999999999986 8898988887766543332111100 0 011112321 022
Q ss_pred HHHHhcCCCCCcHHHHHHcCccceecCC
Q 015541 228 AYLGMTGKRISTPSDALFAGLGTDYVPS 255 (405)
Q Consensus 228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~ 255 (405)
..++-...-++ |+||+++||||+|+..
T Consensus 193 ~~~~~rd~wmt-A~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 193 WADSDRDYWMT-AQEAKEYGMIDEVLIK 219 (221)
T ss_pred HHHhhcCccCC-HHHHHHcCCccEEeec
Confidence 22233344578 9999999999999864
No 126
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.34 E-value=0.0012 Score=63.10 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=77.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 015541 89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY 168 (405)
Q Consensus 89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv 168 (405)
+-++.+..+.+.++++...++..+ .++|...| |++. ...++...|.+++.|+
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~~I-dLii~TpG-------G~v~--------------------AA~~I~~~l~~~~~~v 121 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDKPI-DLIIHTPG-------GLVD--------------------AAEQIARALREHPAKV 121 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCCce-EEEEECCC-------CcHH--------------------HHHHHHHHHHhCCCCE
Confidence 678889999999999999887766 44455444 3332 2235566788999999
Q ss_pred EEEECCccccccceecccccEEEEeCCeeeeCccccccccCC
Q 015541 169 ISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD 210 (405)
Q Consensus 169 Ia~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~ 210 (405)
++.|+..|+.||.-+|++||-+++++.+.+|--+.++|-+|.
T Consensus 122 ~v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA 163 (285)
T PF01972_consen 122 TVIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPA 163 (285)
T ss_pred EEEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCCh
Confidence 999999999999999999999999999999999999988774
No 127
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.28 E-value=0.0035 Score=57.77 Aligned_cols=139 Identities=14% Similarity=0.031 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEE--EEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541 90 AMNLDMDIKYKSFLDEWESDPRVKCV--LIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167 (405)
Q Consensus 90 al~~~m~~~L~~~l~~~~~d~~v~~v--vl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP 167 (405)
.++.++..++...|..++.++..+-| .|-+.| ||+.. ...++..|..++-|
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG-------G~v~~--------------------g~aIyd~m~~~~~~ 85 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG-------GSVYD--------------------GLGIFDTMQHVKPD 85 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC-------cchhh--------------------HHHHHHHHHhcCCC
Confidence 47889999999999988754333333 334544 33321 12344466778889
Q ss_pred EEEEECCccccccceecccccE--EEEeCCeeeeCccccccccCCccHHH----H-----------HhcCCChH-HHHHH
Q 015541 168 YISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY----I-----------AAKGPGGG-SVGAY 229 (405)
Q Consensus 168 vIa~v~G~a~GgG~~lal~~D~--riate~a~f~~PE~~iGl~P~~G~~~----~-----------L~r~~G~~-~~a~~ 229 (405)
|.+.+.|.|.+.|.-|++++|. |++.++++|-+-...-|..-...-.. . +.+..|.. ..-..
T Consensus 86 V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~ 165 (196)
T PRK12551 86 VHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQE 165 (196)
T ss_pred EEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999999884 88888888877555433211010000 0 11112211 01222
Q ss_pred HHhcCCCCCcHHHHHHcCccceecCCC
Q 015541 230 LGMTGKRISTPSDALFAGLGTDYVPSG 256 (405)
Q Consensus 230 l~ltG~~i~~a~eA~~~GLv~~vv~~~ 256 (405)
++-.-.-++ |+||+++||||+++...
T Consensus 166 ~~~rd~~ms-a~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 166 DTDRDFFMS-PSEAVEYGLIDLVIDKR 191 (196)
T ss_pred HhhcCcCCC-HHHHHHcCCCcEEeccC
Confidence 222334577 99999999999999764
No 128
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.25 E-value=0.0034 Score=57.99 Aligned_cols=139 Identities=13% Similarity=0.084 Sum_probs=88.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCce--EEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCC
Q 015541 89 NAMNLDMDIKYKSFLDEWESDPRVK--CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK 166 (405)
Q Consensus 89 Nal~~~m~~~L~~~l~~~~~d~~v~--~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~k 166 (405)
-.++.++-+.+...|..++.++.-+ .|.|.+.| ||+.. ...+...|...+-
T Consensus 34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG-------G~v~~--------------------GlaIyd~m~~~~~ 86 (201)
T PRK14513 34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG-------GEVYA--------------------GLAIYDTMRYIKA 86 (201)
T ss_pred CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC-------Cchhh--------------------HHHHHHHHHhcCC
Confidence 4578888888988887777643222 33345554 34321 1234446778888
Q ss_pred cEEEEECCccccccceecccccE--EEEeCCeeeeCccccccccCCccHHHH-----------------HhcCCChH-HH
Q 015541 167 PYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSYI-----------------AAKGPGGG-SV 226 (405)
Q Consensus 167 PvIa~v~G~a~GgG~~lal~~D~--riate~a~f~~PE~~iGl~P~~G~~~~-----------------L~r~~G~~-~~ 226 (405)
||.+.+.|.|.+.|.-|++++|- |++.+++++-+-...-|+. +-++.. +.+..|.. ..
T Consensus 87 ~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~ 164 (201)
T PRK14513 87 PVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEK 164 (201)
T ss_pred CEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999985 9999999988766554431 111111 11112211 01
Q ss_pred HHHHHhcCCCCCcHHHHHHcCccceecCCCC
Q 015541 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGN 257 (405)
Q Consensus 227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~ 257 (405)
-..++--..-++ |+||+++||||+|+.+..
T Consensus 165 I~~~~~rd~~ms-a~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 165 LLRDMERDYFMS-PEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred HHHHhccCcccC-HHHHHHcCCCcEEeccCC
Confidence 122222233477 999999999999997643
No 129
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.22 E-value=0.0018 Score=69.32 Aligned_cols=85 Identities=11% Similarity=0.046 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEEC
Q 015541 94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD 173 (405)
Q Consensus 94 ~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~ 173 (405)
..+.++.++|+.+..|+.|++|||.-.+. .|+++..+ ...++.+..+....|||||..+
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~----~g~~~~~~-----------------~ei~~ai~~fk~sgKpVvA~~~ 134 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNF----SGWDSPHL-----------------VEIGSALSEFKDSGKPVYAYGT 134 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCC----CCCCHHHH-----------------HHHHHHHHHHHhcCCeEEEEEc
Confidence 35678999999999999999999987531 23433221 2233444456667899999999
Q ss_pred CccccccceecccccEEEEeCCeeeeC
Q 015541 174 GVTMGFGIGISGHGRYRIVTEKTLLAM 200 (405)
Q Consensus 174 G~a~GgG~~lal~~D~riate~a~f~~ 200 (405)
+++ -||.-|+.+||.+++.+.+.+++
T Consensus 135 ~~~-s~~YylAs~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 135 NYS-QGQYYLASFADEIILNPMGSVDL 160 (584)
T ss_pred ccc-chhhhhhhhCCEEEECCCceEEe
Confidence 876 57788999999999999877654
No 130
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.17 E-value=0.012 Score=57.29 Aligned_cols=155 Identities=18% Similarity=0.169 Sum_probs=97.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (405)
Q Consensus 77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (405)
|+++..|-.-..-+++....+.+.++++.+.+. .+-+|.|.-.| ++ -+. + ... ... -......
T Consensus 122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSg-Ga-----Rmq---E-----g~~-sL~-~~ak~~~ 184 (285)
T TIGR00515 122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASG-GA-----RMQ---E-----ALL-SLM-QMAKTSA 184 (285)
T ss_pred EEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-Cc-----ccc---c-----chh-HHH-hHHHHHH
Confidence 555555544456789999999999999988765 56777776654 22 111 1 000 011 1122233
Q ss_pred HHHHHHhCCCcEEEEECCccccccce-ecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCC
Q 015541 157 LICKISEYKKPYISLMDGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK 235 (405)
Q Consensus 157 l~~~i~~~~kPvIa~v~G~a~GgG~~-lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~ 235 (405)
.+..+.....|+|+++-|+|.||+.. .++.+|++||.+++.+++--.. .+...+|. + +. +
T Consensus 185 ~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e-----~--lp-e 245 (285)
T TIGR00515 185 ALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVRE-----K--LP-E 245 (285)
T ss_pred HHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcC-----c--cc-h
Confidence 44456677899999999999999655 4569999999999877762221 11122221 1 11 2
Q ss_pred CCCcHHHHHHcCccceecCCCChHHHHHHHHH
Q 015541 236 RISTPSDALFAGLGTDYVPSGNLGSLKEALLA 267 (405)
Q Consensus 236 ~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~ 267 (405)
.+.+++-+.+.|+||.+|++.++.....++..
T Consensus 246 ~~q~ae~~~~~G~vD~iv~~~~~r~~l~~~L~ 277 (285)
T TIGR00515 246 GFQTSEFLLEHGAIDMIVHRPEMKKTLASLLA 277 (285)
T ss_pred hcCCHHHHHhCCCCcEEECcHHHHHHHHHHHH
Confidence 24336668889999999999887665555544
No 131
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.13 E-value=0.022 Score=54.02 Aligned_cols=163 Identities=12% Similarity=0.045 Sum_probs=94.5
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHH
Q 015541 75 NGVAVITLDRPKALNAMNLDMDIKYKSFLDEW-ESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA 153 (405)
Q Consensus 75 ~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~-~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (405)
|.-..|.=|+|.. .++.+-...+...+... +.+.++-+|.|.=. ..|-.|..-.+.. ....
T Consensus 31 G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDt--pG~~~g~~aE~~G--------------~~~a 92 (238)
T TIGR03134 31 GGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDT--PSQAYGRREELLG--------------INQA 92 (238)
T ss_pred CEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeC--CCCCCCHHHHHHH--------------HHHH
Confidence 4433344455553 78877777788888875 55566666666544 2354444322211 1222
Q ss_pred HHHHHHHHH---hCCCcEEEEECCccccccce-ecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHH
Q 015541 154 EYSLICKIS---EYKKPYISLMDGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY 229 (405)
Q Consensus 154 ~~~l~~~i~---~~~kPvIa~v~G~a~GgG~~-lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~ 229 (405)
.-++.+.+. ..+.|+|+.|-|.+.|||+. +.+.+|.++|. |...++..+.-|++-.+-|-.. ...+
T Consensus 93 ~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Al-------p~A~i~vm~~e~aa~I~~~~~~---~~~e 162 (238)
T TIGR03134 93 LAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIAL-------PGAMVHVMDLESMARVTKRSVE---ELEA 162 (238)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEc-------CCcEEEecCHHHHHHHHccCHh---HHHH
Confidence 233444444 55699999999999988753 33346666665 5555566666666655544332 2333
Q ss_pred HHhcC--CCCCcHHHHHHcCccceecCCCChHHHHHHHH
Q 015541 230 LGMTG--KRISTPSDALFAGLGTDYVPSGNLGSLKEALL 266 (405)
Q Consensus 230 l~ltG--~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~ 266 (405)
+.=+- ...+ ...+.+.|+||+++++.+-+..+..+.
T Consensus 163 ~a~~~~~~a~~-~~~~~~~G~vd~vi~~~~~~~~~~~~~ 200 (238)
T TIGR03134 163 LAKSSPVFAPG-IENFVKLGGVHALLDVADADAPAAQLA 200 (238)
T ss_pred HHHhhhhhccC-HHHHHhCCCccEEeCCCCcccHHHHHH
Confidence 32211 1244 678999999999999766433334443
No 132
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.08 E-value=0.012 Score=57.62 Aligned_cols=158 Identities=17% Similarity=0.119 Sum_probs=98.2
Q ss_pred eCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHH
Q 015541 74 PNGVAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFT 152 (405)
Q Consensus 74 ~~~v~~ItLnrp~-~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (405)
+|.-..|.-|.|. ..-+++....+.+.++++.+... .+-+|.|.-.| ++ -+.+ .... .. ...
T Consensus 119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg-Ga-----rmqE--------gi~s-L~-~~a 181 (292)
T PRK05654 119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG-GA-----RMQE--------GLLS-LM-QMA 181 (292)
T ss_pred CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-Cc-----chhh--------hhhH-HH-hHH
Confidence 3433334445554 56889999999999999988776 46777777554 22 2221 0000 01 112
Q ss_pred HHHHHHHHHHhCCCcEEEEECCccccccce-ecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHH
Q 015541 153 AEYSLICKISEYKKPYISLMDGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 231 (405)
Q Consensus 153 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~-lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ 231 (405)
.....+..+.....|+|+++.|.|.||+.. .++.+|++||.+++.+++--. -.+...+| .++
T Consensus 182 k~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGp-----------rvie~~~~-----e~l- 244 (292)
T PRK05654 182 KTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGP-----------RVIEQTVR-----EKL- 244 (292)
T ss_pred HHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCH-----------HHHHhhhh-----hhh-
Confidence 223344456677899999999999999655 466799999988887766221 11111111 111
Q ss_pred hcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHH
Q 015541 232 MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLA 267 (405)
Q Consensus 232 ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~ 267 (405)
. +.+.+++-+.+.|+||.+|++.++.....++..
T Consensus 245 -p-e~~~~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~ 278 (292)
T PRK05654 245 -P-EGFQRAEFLLEHGAIDMIVHRRELRDTLASLLA 278 (292)
T ss_pred -h-hhhcCHHHHHhCCCCcEEECHHHHHHHHHHHHH
Confidence 1 123337778899999999999877665555544
No 133
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.04 E-value=0.00035 Score=61.79 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=59.1
Q ss_pred HHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCcccc------------ccc---------cCCcc-----HH
Q 015541 161 ISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG------------IGL---------FPDVG-----FS 214 (405)
Q Consensus 161 i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~------------iGl---------~P~~G-----~~ 214 (405)
..+..|||||.++|.+..||.-|+.+||-+++.+.+.++..-+. +|+ +.+.+ .+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 35678999999999999999999999999999998876654332 232 22222 00
Q ss_pred ----HHHh-----------------cCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChH
Q 015541 215 ----YIAA-----------------KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG 259 (405)
Q Consensus 215 ----~~L~-----------------r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~ 259 (405)
..+. |-+.. -...-++.|..++ |++|++.||||++-..+++.
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~--~~v~~~~~~~~~~-~~~A~~~GLiD~i~~~~~~~ 144 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSP--DDVEEIADGGVFT-AQQALELGLIDEIGTFDEAI 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-H--HHHHCHHCCHEEE-HHHHHHTTSSSEETSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCH--HHHHHHHhhcccc-HHHHHHcCchhhcCCHHHHH
Confidence 0110 11111 1222357899999 99999999999997544443
No 134
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=96.75 E-value=0.032 Score=54.37 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=92.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (405)
Q Consensus 77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (405)
|.++..+--=..-++....-+.+.++++.+.+. .+-+|+|..+|+ +-+.+-. .. ...+ .....
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SGG------ARmQEg~--------~s-L~qm-ak~sa 197 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNE-SLPLIIVCASGG------ARMQEGS--------LS-LMQM-AKISS 197 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCCC------ccccccc--------hh-hhhh-HHHHH
Confidence 555555544456788888889999998888775 366777766552 2222110 00 0011 11111
Q ss_pred HHHH-HHhCCCcEEEEECCcccccccee-cccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcC
Q 015541 157 LICK-ISEYKKPYISLMDGVTMGFGIGI-SGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTG 234 (405)
Q Consensus 157 l~~~-i~~~~kPvIa~v~G~a~GgG~~l-al~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG 234 (405)
.+.. ...-..|+|+++.|+|.||+... ++.||++|+.+++.+++--. -.....+|.. +.
T Consensus 198 a~~~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGP-----------rVIe~t~ge~-------lp- 258 (296)
T CHL00174 198 ALYDYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGK-----------RVIEQTLNKT-------VP- 258 (296)
T ss_pred HHHHHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCH-----------HHHHHhcCCc-------CC-
Confidence 1122 22457999999999999998776 55699999987876665211 1111111211 11
Q ss_pred CCCCcHHHHHHcCccceecCCCChHHHHHHHHH
Q 015541 235 KRISTPSDALFAGLGTDYVPSGNLGSLKEALLA 267 (405)
Q Consensus 235 ~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~ 267 (405)
+-+.+|+-.++.|+||.+|+..++.+...+|..
T Consensus 259 e~fq~ae~l~~~G~vD~iV~r~~lr~~l~~ll~ 291 (296)
T CHL00174 259 EGSQAAEYLFDKGLFDLIVPRNLLKGVLSELFQ 291 (296)
T ss_pred cccccHHHHHhCcCceEEEcHHHHHHHHHHHHH
Confidence 223337778899999999998777665555543
No 135
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.55 E-value=0.06 Score=56.79 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=97.8
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHH
Q 015541 80 ITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLI 158 (405)
Q Consensus 80 ItLnrp~-~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (405)
|.=|+|. ..-+++..-.+.+.++++.+.+. ++-+|.|.-.+ .|..|.+-. ....++..-+++
T Consensus 319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~--G~~~g~~~E--------------~~g~~~~~a~~~ 381 (512)
T TIGR01117 319 IIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVP--GFLPGVNQE--------------YGGIIRHGAKVL 381 (512)
T ss_pred EEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCc--CccccHHHH--------------HHHHHHHHHHHH
Confidence 4445554 34569999999999999988774 56677776553 265554321 112344555677
Q ss_pred HHHHhCCCcEEEEECCccccccceeccc-----ccEEEEeCCeeeeCccccccccCCccHHHHHhc-CC----ChH-HHH
Q 015541 159 CKISEYKKPYISLMDGVTMGFGIGISGH-----GRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK-GP----GGG-SVG 227 (405)
Q Consensus 159 ~~i~~~~kPvIa~v~G~a~GgG~~lal~-----~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r-~~----G~~-~~a 227 (405)
..+.....|+|+.|-|.+.|||. ++++ +|+++|.+++.++. .+.-|+...+-+ -+ -.. ...
T Consensus 382 ~a~~~~~vP~isvi~g~~~Gga~-~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~ 453 (512)
T TIGR01117 382 YAYSEATVPKVTIITRKAYGGAY-LAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRK 453 (512)
T ss_pred HHHHhCCCCEEEEEcCCCchHHH-HHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHH
Confidence 78889999999999999988754 4443 78877777766554 433333333322 11 000 011
Q ss_pred HHHH-hcCCCCCcHHHHHHcCccceecCCCChHHHHHH
Q 015541 228 AYLG-MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEA 264 (405)
Q Consensus 228 ~~l~-ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~ 264 (405)
..+. ..-+..+ +..+...|+||.||++.+......+
T Consensus 454 ~~~~~~~~~~~~-~~~~a~~g~vD~VI~P~~tR~~l~~ 490 (512)
T TIGR01117 454 QKIAEYREEFAN-PYKAAARGYVDDVIEPKQTRPKIVN 490 (512)
T ss_pred HHHHHHHHhhcC-HHHHHhcCCCCeeEChHHHHHHHHH
Confidence 1111 1122345 8899999999999998776543333
No 136
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.037 Score=56.39 Aligned_cols=149 Identities=15% Similarity=0.104 Sum_probs=103.7
Q ss_pred eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHH
Q 015541 74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA 153 (405)
Q Consensus 74 ~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (405)
++.|.+|.++ +++++.+.+.+.+.++.++++. ..+|||.=.-|+. +...
T Consensus 25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~-a~~vvl~ldTPGG-------------------------l~~s 73 (436)
T COG1030 25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEEN-AAAVVLELDTPGG-------------------------LLDS 73 (436)
T ss_pred CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCC-CcEEEEEecCCCc-------------------------hHHH
Confidence 3457777776 7889999999999999999875 2344443221210 1233
Q ss_pred HHHHHHHHHhCCCcEEEEE---CCccccccceecccccEEEEeCCeeeeCcccc-cc-c-cCCcc-HHHH------HhcC
Q 015541 154 EYSLICKISEYKKPYISLM---DGVTMGFGIGISGHGRYRIVTEKTLLAMPENG-IG-L-FPDVG-FSYI------AAKG 220 (405)
Q Consensus 154 ~~~l~~~i~~~~kPvIa~v---~G~a~GgG~~lal~~D~riate~a~f~~PE~~-iG-l-~P~~G-~~~~------L~r~ 220 (405)
..++...|.+.+.||+..+ .+.|..+|.-++++||+..+.+.+.++--..- .| - .+... ..+. +++.
T Consensus 74 m~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~ 153 (436)
T COG1030 74 MRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEE 153 (436)
T ss_pred HHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHH
Confidence 4577889999999998888 34699999999999999999998888764432 22 1 11111 1222 2233
Q ss_pred CChH-HHHHHHHhcCCCCCcHHHHHHcCccceecC
Q 015541 221 PGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVP 254 (405)
Q Consensus 221 ~G~~-~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~ 254 (405)
-|+. ..+..++-....++ ++||++.|++|-+..
T Consensus 154 ~gRN~~~ae~~v~~~~~l~-a~eA~~~~vid~iA~ 187 (436)
T COG1030 154 RGRNPTWAERFVTENLSLT-AEEALRQGVIDLIAR 187 (436)
T ss_pred cCCChHHHHHHhhhccCCC-hhHHHhcCccccccC
Confidence 3332 26777888889999 999999999997754
No 137
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.43 E-value=0.021 Score=52.49 Aligned_cols=98 Identities=14% Similarity=0.076 Sum_probs=59.5
Q ss_pred HHHHHHhCCCcEEEEECCccccccceecccccEE--EEeCCeeeeCccccccccCCccHHH----------------HHh
Q 015541 157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYR--IVTEKTLLAMPENGIGLFPDVGFSY----------------IAA 218 (405)
Q Consensus 157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~r--iate~a~f~~PE~~iGl~P~~G~~~----------------~L~ 218 (405)
++..|...++||...+.|.|..-|.-|+++++.. ++.+++++-+--.. |.+-+...=. .++
T Consensus 77 Iydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a 155 (200)
T COG0740 77 IYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYA 155 (200)
T ss_pred HHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778899999999999999999999988764 66666655443322 2222111100 011
Q ss_pred cCCChHHHHH--HHHhcCCCCCcHHHHHHcCccceecCCCC
Q 015541 219 KGPGGGSVGA--YLGMTGKRISTPSDALFAGLGTDYVPSGN 257 (405)
Q Consensus 219 r~~G~~~~a~--~l~ltG~~i~~a~eA~~~GLv~~vv~~~~ 257 (405)
..-|.. ... ...=-..-++ |+||+++||||+|+...+
T Consensus 156 ~~TGq~-~e~i~~d~drd~~ms-a~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 156 EHTGQT-LEKIEKDTDRDTWMS-AEEAKEYGLIDKVIESRE 194 (200)
T ss_pred HHcCCC-HHHHHHhhcccccCC-HHHHHHcCCcceeccccc
Confidence 111221 111 1111234578 999999999999997654
No 138
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=96.30 E-value=0.045 Score=51.32 Aligned_cols=140 Identities=17% Similarity=0.156 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCC---CceEEEEeeCCCCCcccC---CChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHh
Q 015541 90 AMNLDMDIKYKSFLDEWESDP---RVKCVLIEGSGPRAFCAG---MDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISE 163 (405)
Q Consensus 90 al~~~m~~~L~~~l~~~~~d~---~v~~vvl~g~g~~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 163 (405)
.++.++.+.+...|-.++.++ ++ -+-|-|.|+ ..-+| |++. ....+...|..
T Consensus 48 ~~~~~~a~~iiaqLl~L~~~~~~k~I-~lyINSpGG-sv~~G~~iG~v~--------------------~glaIyD~m~~ 105 (222)
T PRK12552 48 QVGMDVTELIIAQLLYLEFDDPEKPI-YFYINSTGT-SWYTGDAIGFET--------------------EAFAICDTMRY 105 (222)
T ss_pred chhHhHHHHHHHHHHHHhccCCCCCE-EEEEeCCCC-Cccccccccccc--------------------cHHHHHHHHHh
Confidence 445558888888877776543 34 344566663 44444 2221 11234445667
Q ss_pred CCCcEEEEECCccccccceecccccE--EEEeCCeeeeCccccccccCCccHHHH------HhcCCChHHHHHHHHhcCC
Q 015541 164 YKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSYI------AAKGPGGGSVGAYLGMTGK 235 (405)
Q Consensus 164 ~~kPvIa~v~G~a~GgG~~lal~~D~--riate~a~f~~PE~~iGl~P~~G~~~~------L~r~~G~~~~a~~l~ltG~ 235 (405)
.+-||.+.+.|.|.+.+.-|++++|- |.+.++++|-+-....|.. +-++-+ |-+.-- .-...|.--||+
T Consensus 106 ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~-~l~~iya~~TG~ 182 (222)
T PRK12552 106 IKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKR-TMLEILSRNTGQ 182 (222)
T ss_pred cCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHH-HHHHHHHHHHCC
Confidence 78899999999999999999999985 8898999887766544431 111111 111100 001122223443
Q ss_pred -------------CCCcHHHHHHcCccceecCC
Q 015541 236 -------------RISTPSDALFAGLGTDYVPS 255 (405)
Q Consensus 236 -------------~i~~a~eA~~~GLv~~vv~~ 255 (405)
-++ |+||+++||||+|+.+
T Consensus 183 ~~e~I~~d~~rd~wms-A~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 183 TVEKLSKDTDRMFYLT-PQEAKEYGLIDRVLES 214 (222)
T ss_pred CHHHHHHHhcCCCcCC-HHHHHHcCCCcEEecc
Confidence 478 9999999999999965
No 139
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.00 E-value=0.091 Score=55.46 Aligned_cols=143 Identities=15% Similarity=0.061 Sum_probs=81.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (405)
Q Consensus 77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (405)
|.++-.+--=..-++...-.+.+.++++.+.++. +-+|.|.-+| ++ .+.+-.. ......+.| .
T Consensus 84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-Ga-----rm~eg~~------~l~~~~~~~----~ 146 (512)
T TIGR01117 84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-GA-----RIQEAVD------ALKGYGDIF----Y 146 (512)
T ss_pred EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-CC-----Cccccch------hhhhHHHHH----H
Confidence 4444444333567888888888999888887764 4556655443 22 2211000 000011111 1
Q ss_pred HHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCe-eeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCC
Q 015541 157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT-LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK 235 (405)
Q Consensus 157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a-~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~ 235 (405)
.... ..-..|+|+++.|.|.||+......|||+|+++++ .+.+ ++...+....|.. ++.+
T Consensus 147 ~~~~-~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~-----------aGP~vv~~~~Ge~-------v~~e 207 (512)
T TIGR01117 147 RNTI-ASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI-----------TGPQVIKTVTGEE-------VTAE 207 (512)
T ss_pred HHHH-HcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEe-----------cChHHHHhhcCcc-------cchh
Confidence 1111 23358999999999999998888899999999864 3443 1111222222211 2344
Q ss_pred CCCcHHHHH--HcCccceecCCC
Q 015541 236 RISTPSDAL--FAGLGTDYVPSG 256 (405)
Q Consensus 236 ~i~~a~eA~--~~GLv~~vv~~~ 256 (405)
.+. +.+.. ..|++|.+++++
T Consensus 208 ~lG-Ga~~h~~~sGv~d~~~~de 229 (512)
T TIGR01117 208 QLG-GAMAHNSVSGVAHFIAEDD 229 (512)
T ss_pred hcc-hHHHhccccceeEEecCCh
Confidence 454 44444 589999998764
No 140
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.72 E-value=0.16 Score=54.12 Aligned_cols=110 Identities=13% Similarity=0.051 Sum_probs=69.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (405)
Q Consensus 77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (405)
|.++--+.-=+.-+++....+.+.++++.+.+.. +-+|.|.-.| +++-.+ ....+ .... .+...+.
T Consensus 131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSg-Garl~~-q~e~~----------~~~~-~~g~if~ 196 (569)
T PLN02820 131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSG-GANLPR-QAEVF----------PDRD-HFGRIFY 196 (569)
T ss_pred EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC-CcCCcc-ccccc----------chHh-HHHHHHH
Confidence 4444444333568899999999999999887764 5666665443 233211 00000 0000 1122222
Q ss_pred HHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC-eeeeC
Q 015541 157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAM 200 (405)
Q Consensus 157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~-a~f~~ 200 (405)
....+.....|+|++|-|.|.|||..+...||++|+++. +.+.+
T Consensus 197 ~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~ 241 (569)
T PLN02820 197 NQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL 241 (569)
T ss_pred HHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe
Confidence 333456677999999999999999999999999999874 44443
No 141
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=95.34 E-value=0.056 Score=52.10 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=64.1
Q ss_pred HHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCC
Q 015541 156 SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK 235 (405)
Q Consensus 156 ~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~ 235 (405)
+-...+.+++.|+||.|=|---+||.--...+|.+.+-|+++|+. +.|.++++.++-.. +++.+. -...
T Consensus 179 ~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~----~ka~eA-Ae~m 247 (317)
T COG0825 179 RNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDA----SKAKEA-AEAM 247 (317)
T ss_pred HHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcCh----hhhHHH-HHHc
Confidence 444568899999999998886555543233579999999999986 56767666655322 234443 3446
Q ss_pred CCCcHHHHHHcCccceecCC
Q 015541 236 RISTPSDALFAGLGTDYVPS 255 (405)
Q Consensus 236 ~i~~a~eA~~~GLv~~vv~~ 255 (405)
.|+ |.+.+++|+||.|+|.
T Consensus 248 kit-a~dLk~lgiID~II~E 266 (317)
T COG0825 248 KIT-AHDLKELGIIDGIIPE 266 (317)
T ss_pred CCC-HHHHHhCCCcceeccC
Confidence 788 9999999999999985
No 142
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=95.29 E-value=0.13 Score=54.13 Aligned_cols=140 Identities=19% Similarity=0.179 Sum_probs=91.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (405)
Q Consensus 77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (405)
|.++-.+.--...++.....+.+.++++.+.++. +-+|.|.-.|+ +| + ++.+-.... . -+...+.
T Consensus 59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~dsgG-a~--~-r~~eg~~~l---------~-~~g~i~~ 123 (493)
T PF01039_consen 59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVDSGG-AF--L-RMQEGVESL---------M-GMGRIFR 123 (493)
T ss_dssp EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEEESS-BC--G-GGGGHHHHH---------H-HHHHHHH
T ss_pred EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEeccccc-cc--c-ccchhhhhh---------h-hhHHHHH
Confidence 4444555445678899999999999999888764 55666644331 21 1 444433211 1 1222333
Q ss_pred HHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC-eeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCC
Q 015541 157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK 235 (405)
Q Consensus 157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~-a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~ 235 (405)
-...+.. ..|+|+++.|.|.|||..++..||++|++++ +.+.+- |+. ..+ ..||+
T Consensus 124 ~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~--------------------GP~--vv~-~~~Ge 179 (493)
T PF01039_consen 124 AIARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA--------------------GPR--VVE-SATGE 179 (493)
T ss_dssp HHHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------THH--HHH-HHHSS
T ss_pred HHHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec--------------------ccc--ccc-cccCc
Confidence 3445566 9999999999999999999999999999987 766541 211 111 24467
Q ss_pred CCCcHHH-------HHHcCccceecCCC
Q 015541 236 RISTPSD-------ALFAGLGTDYVPSG 256 (405)
Q Consensus 236 ~i~~a~e-------A~~~GLv~~vv~~~ 256 (405)
.++ .++ +...|.+|.+++++
T Consensus 180 ~~~-~~~lgG~~~h~~~sG~~d~v~~de 206 (493)
T PF01039_consen 180 EVD-SEELGGADVHAAKSGVVDYVVDDE 206 (493)
T ss_dssp CTS-HHHHHBHHHHHHTSSSSSEEESSH
T ss_pred ccc-chhhhhhhhhcccCCCceEEEech
Confidence 777 554 24689999999875
No 143
>PRK10949 protease 4; Provisional
Probab=95.05 E-value=0.12 Score=55.81 Aligned_cols=85 Identities=7% Similarity=0.072 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEEC
Q 015541 94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD 173 (405)
Q Consensus 94 ~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~ 173 (405)
-.+.++.++|+.+.+|+.|++|||.-.++. |+.+.. ....++.+..+....|||||..+
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~g----G~~~a~-----------------~~eI~~ai~~fk~sGKpVvA~~~ 153 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNFA----GADQPS-----------------MQYIGKALREFRDSGKPVYAVGD 153 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCCC----CccHHH-----------------HHHHHHHHHHHHHhCCeEEEEec
Confidence 345689999999999999999999976421 222211 11223444456667899999766
Q ss_pred CccccccceecccccEEEEeCCeeeeC
Q 015541 174 GVTMGFGIGISGHGRYRIVTEKTLLAM 200 (405)
Q Consensus 174 G~a~GgG~~lal~~D~riate~a~f~~ 200 (405)
.++ -+|.-||.+||-+++.+.+.+++
T Consensus 154 ~~~-s~~YyLASaAD~I~l~P~G~v~~ 179 (618)
T PRK10949 154 SYS-QGQYYLASFANKIYLSPQGVVDL 179 (618)
T ss_pred Ccc-chhhhhhhhCCEEEECCCceEEE
Confidence 665 46788999999999999877654
No 144
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=95.04 E-value=0.39 Score=46.07 Aligned_cols=154 Identities=18% Similarity=0.123 Sum_probs=94.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (405)
Q Consensus 77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (405)
|+...++--=-.-+|..-.=+.|.++++.+-.+ .+.+|+++.+|+ +-..|-.- ..-.......
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGG------ARMQEg~l----------SLMQMaktsa 186 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGG------ARMQEGIL----------SLMQMAKTSA 186 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcc------hhHhHHHH----------HHHHHHHHHH
Confidence 555555543334566666677888888887775 478999988873 22221100 0001223334
Q ss_pred HHHHHHhCCCcEEEEECCcccccc-ceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCC
Q 015541 157 LICKISEYKKPYISLMDGVTMGFG-IGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK 235 (405)
Q Consensus 157 l~~~i~~~~kPvIa~v~G~a~GgG-~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~ 235 (405)
.+.++..-..|+|+.+..+++||- ..+++..|+.||-+.|.+++.-- |.+-. ...+=+-.|
T Consensus 187 Al~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGp---------------RVIEQ--Tire~LPeg- 248 (294)
T COG0777 187 ALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGP---------------RVIEQ--TIREKLPEG- 248 (294)
T ss_pred HHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcc---------------hhhhh--hhcccCCcc-
Confidence 566778889999999999999883 55778899999876766555321 22210 111111111
Q ss_pred CCCcHHHHHHcCccceecCCCChHHHHHHHH
Q 015541 236 RISTPSDALFAGLGTDYVPSGNLGSLKEALL 266 (405)
Q Consensus 236 ~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~ 266 (405)
+..++-.++.|+||.||+..++......+.
T Consensus 249 -fQ~aEfLlehG~iD~iv~R~elr~tla~ll 278 (294)
T COG0777 249 -FQTAEFLLEHGMIDMIVHRDELRTTLASLL 278 (294)
T ss_pred -hhhHHHHHHcCCceeeecHHHHHHHHHHHH
Confidence 223788899999999998866654444443
No 145
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=92.37 E-value=0.62 Score=48.89 Aligned_cols=102 Identities=17% Similarity=0.060 Sum_probs=67.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (405)
Q Consensus 77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (405)
+.++-=+-+.+.-++..--.+.+.++.+.+.++.--.+.+..|.| +.+.+=. ...+ .+...+.
T Consensus 93 ~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgG-------ari~~~v---------~~l~-g~g~iF~ 155 (526)
T COG4799 93 VFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGG-------ARIQEGV---------PSLA-GYGRIFY 155 (526)
T ss_pred EEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEcccc-------cccccCc---------cccc-cchHHHH
Confidence 333444455577888887888888888887776544444444443 2332111 1111 1223333
Q ss_pred HHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCe
Q 015541 157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196 (405)
Q Consensus 157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a 196 (405)
.+..+... .|.|++|-|.|.|||+-+...||++|+.+++
T Consensus 156 ~~a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 156 RNARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred HHHHhccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence 34455566 9999999999999999999999999999985
No 146
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=89.45 E-value=1.1 Score=47.27 Aligned_cols=162 Identities=15% Similarity=0.160 Sum_probs=92.7
Q ss_pred CcEEEEEEcCCCCCC-CCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHH
Q 015541 75 NGVAVITLDRPKALN-AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA 153 (405)
Q Consensus 75 ~~v~~ItLnrp~~~N-al~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (405)
|.-.-|.=|+|.... +++.+-.+...+.++.++.. ++-+|.|.-. ..|..|-+-. .....+.
T Consensus 293 G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~~-~iPlv~l~dt--pGf~~g~~~E--------------~~g~~~~ 355 (493)
T PF01039_consen 293 GRPVGIIANNPRQRAGALDPDGARKAARFIRLCDAF-NIPLVTLVDT--PGFMPGPEAE--------------RAGIIRA 355 (493)
T ss_dssp TEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHHT-T--EEEEEEE--CEB--SHHHH--------------HTTHHHH
T ss_pred CcceEEEEeccccccccCChHHHHHHHHHHHHHHhh-CCceEEEeec--ccccccchhh--------------hcchHHH
Confidence 433334556665333 69999999999999999884 6778887654 3465554321 1123455
Q ss_pred HHHHHHHHHhCCCcEEEEECCccccccceeccc-c----cEEEEeCCeeeeCccccccccCCccHHHHHhcCC-------
Q 015541 154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGH-G----RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP------- 221 (405)
Q Consensus 154 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~-~----D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~------- 221 (405)
.-+++..+..+..|.|..|-|.+.|||. ++++ . |+++|.+++++ |..+.-|+...+-+.-
T Consensus 356 ga~~~~a~~~~~vP~itvi~~~~~Gga~-~am~~~~~~~~~~~Awp~a~~-------~vm~~e~a~~i~~~~~~~~~~~~ 427 (493)
T PF01039_consen 356 GARLLYALAEATVPKITVIVRKAYGGAY-YAMCGRGYGPDFVFAWPTAEI-------GVMGPEGAASILYRDELEAAEAE 427 (493)
T ss_dssp HHHHHHHHHHH-S-EEEEEEEEEEHHHH-HHTTGGGGTTSEEEEETT-EE-------ESS-HHHHHHHHTHHHHHHSCHC
T ss_pred HHHHHHHHHcCCCCEEEEEeCCccCcch-hhhcccccchhhhhhhhccee-------eecChhhhheeeehhhhhhhhcc
Confidence 6688889999999999999999999876 3333 2 56655555555 4544444444332210
Q ss_pred Ch--HH-HHHHHHhcCC-CCCcHHHHHHcCccceecCCCChHHHH
Q 015541 222 GG--GS-VGAYLGMTGK-RISTPSDALFAGLGTDYVPSGNLGSLK 262 (405)
Q Consensus 222 G~--~~-~a~~l~ltG~-~i~~a~eA~~~GLv~~vv~~~~l~~~~ 262 (405)
|. .. +...+.-.-+ ..+ +..+...|++|.++++.+.....
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~D~ii~p~~tR~~l 471 (493)
T PF01039_consen 428 GADPEAQRAEKIAEYEDELSS-PYRAASRGYVDDIIDPAETRKVL 471 (493)
T ss_dssp CHSHHHHHHHHHHHHHHHHSS-HHHHHHTTSSSEESSGGGHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCC-HHHHHhcCCCCCccCHHHHHHHH
Confidence 00 00 0111111111 145 88999999999999987764433
No 147
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=89.20 E-value=8.8 Score=41.17 Aligned_cols=145 Identities=12% Similarity=0.139 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 015541 89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY 168 (405)
Q Consensus 89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv 168 (405)
-+++.+-.+...+.++.++. -++-+|.|.=. ..|..|.+-.. ....+...++++.+.....|.
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~--pGf~~G~~~E~--------------~G~~~~~a~l~~A~a~~~VP~ 442 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNI--TGFMVGSRSEA--------------SGIAKAGAKMVMAVACAKVPK 442 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEEC--CCCCCCHHHHH--------------hhHHHHHHHHHHHHHhCCCCE
Confidence 45788888888888888876 46777777654 23776655432 123455678888999999999
Q ss_pred EEEECCccccccceec----ccccEEEEeCCeeeeCccccccccCCccHHHHHhcC-C------C----hHHH-H--HHH
Q 015541 169 ISLMDGVTMGFGIGIS----GHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-P------G----GGSV-G--AYL 230 (405)
Q Consensus 169 Ia~v~G~a~GgG~~la----l~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~-~------G----~~~~-a--~~l 230 (405)
|++|-|.+.|||.--. +..|+++|. |...+|..+.-|+.-.+.+. + | .... + ..+
T Consensus 443 isvi~g~a~G~g~~aM~g~~~~~d~~~aw-------p~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~ 515 (569)
T PLN02820 443 ITIIVGGSFGAGNYGMCGRAYSPNFLFMW-------PNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKT 515 (569)
T ss_pred EEEEECCcchHHHHHhcCcCCCCCEEEEC-------CCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHH
Confidence 9999999999764222 234555555 55556666666666555431 0 0 0000 0 000
Q ss_pred -HhcCCCCCcHHHHHHcCccceecCCCCh
Q 015541 231 -GMTGKRISTPSDALFAGLGTDYVPSGNL 258 (405)
Q Consensus 231 -~ltG~~i~~a~eA~~~GLv~~vv~~~~l 258 (405)
-.--+..+ +..|-..|++|.|+++.+.
T Consensus 516 ~~~~~~~~~-p~~aa~~~~vD~VIdP~dT 543 (569)
T PLN02820 516 VEAYEREAN-PYYSTARLWDDGVIDPADT 543 (569)
T ss_pred HHHHHHhCC-HHHHHHcCCcCcccCHHHH
Confidence 11122345 7788899999999988654
No 148
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=80.43 E-value=3.1 Score=40.99 Aligned_cols=78 Identities=19% Similarity=0.171 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhcCC---CceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEE
Q 015541 94 DMDIKYKSFLDEWESDP---RVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS 170 (405)
Q Consensus 94 ~m~~~L~~~l~~~~~d~---~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa 170 (405)
....+|.++|+.+.... .+.+|||. .||++ +.++.. | ..+.+.++|+.++.|||+
T Consensus 55 ~A~~~I~~al~~~~~~~~~~~~Dviii~-RGGGs------~eDL~~--------------F-N~e~varai~~~~~Pvis 112 (319)
T PF02601_consen 55 GAAASIVSALRKANEMGQADDFDVIIII-RGGGS------IEDLWA--------------F-NDEEVARAIAASPIPVIS 112 (319)
T ss_pred chHHHHHHHHHHHHhccccccccEEEEe-cCCCC------hHHhcc--------------c-ChHHHHHHHHhCCCCEEE
Confidence 34567888888887654 46666663 33222 222211 2 234788899999999999
Q ss_pred EECCccccccceec-ccccEEEEeCCe
Q 015541 171 LMDGVTMGFGIGIS-GHGRYRIVTEKT 196 (405)
Q Consensus 171 ~v~G~a~GgG~~la-l~~D~riate~a 196 (405)
+| ||-.= ..|+ +.||+|..|+++
T Consensus 113 aI-GHe~D--~ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 113 AI-GHETD--FTIADFVADLRAPTPTA 136 (319)
T ss_pred ec-CCCCC--chHHHHHHHhhCCCHHH
Confidence 77 22211 1122 456777776654
No 149
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=79.79 E-value=3.3 Score=42.90 Aligned_cols=77 Identities=17% Similarity=0.134 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEEC
Q 015541 94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD 173 (405)
Q Consensus 94 ~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~ 173 (405)
....+|.++++.+...+++.+|||. .||+++- ||.. | ....+.++|+.+|.|||++|
T Consensus 170 ~a~~~i~~al~~~~~~~~~dviii~-RGGGs~e---DL~~-----------------F-n~e~~~rai~~~~~Pvis~i- 226 (432)
T TIGR00237 170 GAVQSIVESIELANTKNECDVLIVG-RGGGSLE---DLWS-----------------F-NDEKVARAIFLSKIPIISAV- 226 (432)
T ss_pred cHHHHHHHHHHHhhcCCCCCEEEEe-cCCCCHH---Hhhh-----------------c-CcHHHHHHHHcCCCCEEEec-
Confidence 4467788888888776556666663 3322221 2211 2 22467889999999999987
Q ss_pred Cccccccceec-ccccEEEEeCC
Q 015541 174 GVTMGFGIGIS-GHGRYRIVTEK 195 (405)
Q Consensus 174 G~a~GgG~~la-l~~D~riate~ 195 (405)
||-.- ..|+ +.+|.|..|++
T Consensus 227 GHe~D--~ti~D~vAd~ra~TPt 247 (432)
T TIGR00237 227 GHETD--FTISDFVADLRAPTPS 247 (432)
T ss_pred CcCCC--ccHHHHhhhccCCCcH
Confidence 22110 1122 45666766654
No 150
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.50 E-value=9.8 Score=36.34 Aligned_cols=135 Identities=15% Similarity=0.085 Sum_probs=74.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEE
Q 015541 90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYI 169 (405)
Q Consensus 90 al~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI 169 (405)
.++.++-+.+...|-.++.+++-|=|.+.=.+| ||++.+ .+.+...+.-++-||=
T Consensus 100 ~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSP-----GG~vta--------------------glAIYDtMq~ik~~V~ 154 (275)
T KOG0840|consen 100 PIDDDVANLVIAQLLYLDSEDPKKPIYLYINSP-----GGSVTA--------------------GLAIYDTMQYIKPDVS 154 (275)
T ss_pred cCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCC-----CCccch--------------------hhhHHHHHHhhCCCce
Confidence 467888888888888887766666666543322 333311 1122224555556665
Q ss_pred EEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHH-----HHhc---CC--ChHHHHHHHHhcCC----
Q 015541 170 SLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY-----IAAK---GP--GGGSVGAYLGMTGK---- 235 (405)
Q Consensus 170 a~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~-----~L~r---~~--G~~~~a~~l~ltG~---- 235 (405)
...=|.|.+-|.-|..+ .+..-+|+||..++=+.-+.|+.. +..+ +. -..-...|---||+
T Consensus 155 Tic~G~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~ 229 (275)
T KOG0840|consen 155 TICVGLAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEV 229 (275)
T ss_pred eeehhhHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 55556666544333222 245667888888877754343321 1110 00 00001122234554
Q ss_pred ---------CCCcHHHHHHcCccceecCC
Q 015541 236 ---------RISTPSDALFAGLGTDYVPS 255 (405)
Q Consensus 236 ---------~i~~a~eA~~~GLv~~vv~~ 255 (405)
.++ |.||+++||+|+|+..
T Consensus 230 i~~d~dRd~fms-a~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 230 IEKDMDRDRFMS-AEEAKEYGLIDKVIDH 257 (275)
T ss_pred HHhhhcccccCC-HHHHHHhcchhhhhcC
Confidence 377 9999999999999864
No 151
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=71.42 E-value=13 Score=36.13 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCCceEEEEeeC
Q 015541 100 KSFLDEWESDPRVKCVLIEGS 120 (405)
Q Consensus 100 ~~~l~~~~~d~~v~~vvl~g~ 120 (405)
.++|+.+++||..++||+-|.
T Consensus 189 id~L~~fe~Dp~T~~ivmiGE 209 (293)
T COG0074 189 IDALEMFEADPETEAIVMIGE 209 (293)
T ss_pred HHHHHHHhcCccccEEEEEec
Confidence 478999999999999999998
No 152
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=71.33 E-value=8 Score=38.36 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccc
Q 015541 99 YKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTM 177 (405)
Q Consensus 99 L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~ 177 (405)
+.+.|+.+++||+.++|++.+++. ++ ......+|... ....||||+.+-|..-
T Consensus 212 ~~D~L~~~~~Dp~T~~Ivl~~E~g------G~------------~e~~aa~fi~~--------~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 212 FIDCLKLFLNDPETEGIILIGEIG------GT------------AEEEAAEWIKN--------NPIKKPVVSFIAGITA 264 (317)
T ss_pred HHHHHHHHhhCCCccEEEEEEecC------Cc------------hhHHHHHHHHh--------hcCCCcEEEEEecCCC
Confidence 456777777888888888887741 11 01122233322 2468999999999864
No 153
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=70.96 E-value=6.3 Score=40.73 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEEC
Q 015541 94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD 173 (405)
Q Consensus 94 ~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~ 173 (405)
....+|.++|+.+.... +.+||| +.||+++ .++. .|+ .+.+..+|+.++.|||++|
T Consensus 176 ~A~~~i~~al~~~~~~~-~Dviii-~RGGGS~------eDL~--------------~Fn-~e~v~~ai~~~~~Pvis~I- 231 (438)
T PRK00286 176 GAAASIVAAIERANARG-EDVLIV-ARGGGSL------EDLW--------------AFN-DEAVARAIAASRIPVISAV- 231 (438)
T ss_pred cHHHHHHHHHHHhcCCC-CCEEEE-ecCCCCH------HHhh--------------ccC-cHHHHHHHHcCCCCEEEec-
Confidence 34677778887776633 445555 2332222 2211 122 3477889999999999987
Q ss_pred Cccccccceec-ccccEEEEeCCe
Q 015541 174 GVTMGFGIGIS-GHGRYRIVTEKT 196 (405)
Q Consensus 174 G~a~GgG~~la-l~~D~riate~a 196 (405)
||-.= ..|+ +.+|.|.+|+++
T Consensus 232 GHE~D--~tl~D~vAd~ra~TPta 253 (438)
T PRK00286 232 GHETD--FTIADFVADLRAPTPTA 253 (438)
T ss_pred cCCCC--ccHHHHhhhccCCChHH
Confidence 22110 1122 456777776654
No 154
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=69.16 E-value=9.4 Score=39.39 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEEC
Q 015541 94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD 173 (405)
Q Consensus 94 ~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~ 173 (405)
....+|.++++.+++.+++.++|+ |.| ||-+.++.. |+ +-.+.++|+.++.|||++|
T Consensus 176 ~A~~eIv~aI~~an~~~~~DvlIV-aRG------GGSiEDLW~--------------FN-dE~vaRAi~~s~iPvISAV- 232 (440)
T COG1570 176 GAAEEIVEAIERANQRGDVDVLIV-ARG------GGSIEDLWA--------------FN-DEIVARAIAASRIPVISAV- 232 (440)
T ss_pred CcHHHHHHHHHHhhccCCCCEEEE-ecC------cchHHHHhc--------------cC-hHHHHHHHHhCCCCeEeec-
Confidence 345777788888887777777776 444 222333322 22 2257789999999999987
Q ss_pred Cccccccceec-ccccEEEEeCC
Q 015541 174 GVTMGFGIGIS-GHGRYRIVTEK 195 (405)
Q Consensus 174 G~a~GgG~~la-l~~D~riate~ 195 (405)
||-. =+.|+ ..+|+|-+|++
T Consensus 233 GHEt--D~tL~DfVAD~RApTPT 253 (440)
T COG1570 233 GHET--DFTLADFVADLRAPTPT 253 (440)
T ss_pred ccCC--CccHHHhhhhccCCCch
Confidence 2211 12222 45667776654
No 155
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=67.12 E-value=36 Score=35.23 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=94.8
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHH
Q 015541 80 ITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLI 158 (405)
Q Consensus 80 ItLnrp~-~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (405)
|.-|+|+ ..-.|..+.-....+.++-..+ ..+-.|.|...++ |--|.+..... ..+.-..|.
T Consensus 353 Ivgnn~kf~~G~L~s~sa~KgarfIe~c~q-~~IPLi~l~ni~G--fm~g~~~e~~g--------------IaK~gAklv 415 (536)
T KOG0540|consen 353 IVGNNPKFAGGVLFSESAVKGARFIELCDQ-RNIPLIFLQNITG--FMVGRAAEAGG--------------IAKHGAKLV 415 (536)
T ss_pred EeccCchhcccccchhhhhhhHHHHHHHHh-cCCcEEEEEccCC--ccccchhhhhc--------------hhhhhhhhh
Confidence 4456676 4567777777777777776665 4688888887753 99998875322 122334677
Q ss_pred HHHHhCCCcEEEEECCccccccce---ecccccEEEEeCCeeeeCccccccccCCccHHHHHhcC-----CChHHHHHHH
Q 015541 159 CKISEYKKPYISLMDGVTMGFGIG---ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-----PGGGSVGAYL 230 (405)
Q Consensus 159 ~~i~~~~kPvIa~v~G~a~GgG~~---lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~-----~G~~~~a~~l 230 (405)
++.+....|-|..+.|.+.||-.. -.+..||.+|.+++++++--. -++.-.|.+. ...++-..+.
T Consensus 416 ~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~-------~~a~~Vi~q~~~e~a~~~~~~~~E~ 488 (536)
T KOG0540|consen 416 YAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGG-------KQAANVIFQITLEKAVALKAPYIEK 488 (536)
T ss_pred hhhhhccCceEEEEecCccCCcccccccccCCceeEEcccceeeeccc-------cchhhhhhhhhhhhhhhhcchHHHH
Confidence 788999999999999999997655 345667777777776665322 1222233333 1100111222
Q ss_pred HhcCCCCCcHHHHHHcCccceecCCCChH
Q 015541 231 GMTGKRISTPSDALFAGLGTDYVPSGNLG 259 (405)
Q Consensus 231 ~ltG~~i~~a~eA~~~GLv~~vv~~~~l~ 259 (405)
. |.++. |...||.|.++++.+..
T Consensus 489 f--~npy~----a~~Rg~~D~II~p~~tR 511 (536)
T KOG0540|consen 489 F--GNPYY----AAARGWDDGIIDPSDTR 511 (536)
T ss_pred h--cCccH----HHHhhccccccChhHhh
Confidence 1 44443 46779999999886553
No 156
>PLN02522 ATP citrate (pro-S)-lyase
Probab=65.37 E-value=15 Score=39.59 Aligned_cols=50 Identities=24% Similarity=0.516 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCCceEEEEeeC-CCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHH--hCCCcEEEEECCc
Q 015541 99 YKSFLDEWESDPRVKCVLIEGS-GPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKIS--EYKKPYISLMDGV 175 (405)
Q Consensus 99 L~~~l~~~~~d~~v~~vvl~g~-g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~--~~~kPvIa~v~G~ 175 (405)
+.+.|+.+++||++++|++.+. |.+ .+.++...+. +..||||+.+-|.
T Consensus 210 ~~D~L~~~~~Dp~Tk~IvlygEiGg~-----------------------------~e~~f~ea~~~a~~~KPVVa~kaGr 260 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVLGELGGR-----------------------------DEYSLVEALKQGKVSKPVVAWVSGT 260 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEEEecCch-----------------------------hHHHHHHHHHHhcCCCCEEEEeccC
Confidence 4566777777888888888777 521 1112222222 2689999999999
Q ss_pred cc
Q 015541 176 TM 177 (405)
Q Consensus 176 a~ 177 (405)
+-
T Consensus 261 sa 262 (608)
T PLN02522 261 CA 262 (608)
T ss_pred CC
Confidence 76
No 157
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=62.59 E-value=63 Score=34.27 Aligned_cols=117 Identities=16% Similarity=0.230 Sum_probs=77.4
Q ss_pred EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHH
Q 015541 77 VAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY 155 (405)
Q Consensus 77 v~~ItLnrp~-~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (405)
|++ .=|.|. ..-+|+.+.-..-.+.++.... .++-.|.|.=. ..|.-|-|-.. ....+.-.
T Consensus 326 VGi-IANqp~~~~G~l~~~sa~KaArFI~~cd~-~~iPlv~L~d~--pGFm~G~~~E~--------------~giik~Ga 387 (526)
T COG4799 326 VGI-IANQPRHLGGVLDIDSADKAARFIRLCDA-FNIPLVFLVDT--PGFMPGTDQEY--------------GGIIKHGA 387 (526)
T ss_pred EEE-EecCccccccccchHHHHHHHHHHHhhhc-cCCCeEEEeCC--CCCCCChhHHh--------------ChHHHhhh
Confidence 444 446665 4567999998888888866655 46778888654 46998887531 12345556
Q ss_pred HHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHH
Q 015541 156 SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS 214 (405)
Q Consensus 156 ~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~ 214 (405)
.+++++.++.+|.|..|-|.+.|||.-....-.+ ..+-.|+.|..++|..-+-|+.
T Consensus 388 kl~~A~aeatVPkitvI~rkayGga~~~M~~~~~---~~~~~~AwP~a~iaVMG~egAv 443 (526)
T COG4799 388 KLLYAVAEATVPKITVITRKAYGGAYYVMGGKAL---GPDFNYAWPTAEIAVMGPEGAV 443 (526)
T ss_pred HHHhhHhhccCCeEEEEecccccceeeeecCccC---CCceeEecCcceeeecCHHHHH
Confidence 8889999999999999999999998644322111 1444555555555554333333
No 158
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=61.53 E-value=24 Score=30.56 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcc
Q 015541 98 KYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVT 176 (405)
Q Consensus 98 ~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a 176 (405)
.+.+.++.+.+||++++|++.-+|-+ | .+.|+ +........ ||||+..-|..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~~------d----------------~~~f~----~~~~~a~~~-KPVv~lk~Grt 92 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGIG------D----------------GRRFL----EAARRAARR-KPVVVLKAGRT 92 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES--S-----------------------HHHHH----HHHHHHCCC-S-EEEEE----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCCC------C----------------HHHHH----HHHHHHhcC-CCEEEEeCCCc
Confidence 36788899999999999999987511 1 12222 344445555 99999999974
No 159
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=46.15 E-value=24 Score=26.30 Aligned_cols=30 Identities=27% Similarity=0.691 Sum_probs=23.8
Q ss_pred HHHcCCcccHHHHHHHHHhccCCccchhhHHHHHHHHHH
Q 015541 303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGM 341 (405)
Q Consensus 303 ~~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~~l 341 (405)
-+||..+.++..-+.+|++. +||++-.+.+
T Consensus 33 i~CF~~~PsikSSLkFLRkT---------pWAR~KVE~l 62 (64)
T PF09905_consen 33 INCFKNNPSIKSSLKFLRKT---------PWAREKVENL 62 (64)
T ss_dssp SSSTTSS--HHHHHHHHHHS---------HHHHHHHHHH
T ss_pred cccCCCCCchHHHHHHHhcC---------HhHHHHHHHh
Confidence 47998888999999999876 5999988765
No 160
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=39.82 E-value=76 Score=28.01 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCCceEEEEeeCCC
Q 015541 98 KYKSFLDEWESDPRVKCVLIEGSGP 122 (405)
Q Consensus 98 ~L~~~l~~~~~d~~v~~vvl~g~g~ 122 (405)
...++|....+||++++|+|-+.++
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~G 84 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVGG 84 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEESS
T ss_pred HHHHHHHHHhcCCCccEEEEEeccc
Confidence 3557888889999999999998863
No 161
>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.21 E-value=1.4e+02 Score=31.95 Aligned_cols=210 Identities=17% Similarity=0.175 Sum_probs=114.8
Q ss_pred CCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHh------CCCcE-EEEECCccccccceecccccEEEEe-------
Q 015541 128 GMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISE------YKKPY-ISLMDGVTMGFGIGISGHGRYRIVT------- 193 (405)
Q Consensus 128 G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~------~~kPv-Ia~v~G~a~GgG~~lal~~D~riat------- 193 (405)
|||+-.+.-....+-..+..+.||.+....+...+. -=||- |.+..- +||.=..||=+..
T Consensus 101 ~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEK------lGlVKLTDFGFSNkf~PG~k 174 (864)
T KOG4717|consen 101 GGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEK------LGLVKLTDFGFSNKFQPGKK 174 (864)
T ss_pred CchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeee------cCceEeeeccccccCCCcch
Confidence 677765543222334456677888877654443333 23552 222211 1222223333221
Q ss_pred -----CCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccc------eecCCCChHHHH
Q 015541 194 -----EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGT------DYVPSGNLGSLK 262 (405)
Q Consensus 194 -----e~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~------~vv~~~~l~~~~ 262 (405)
-.--++-||+.+|=-.|+-+.-.++ +| .-+||+.-|+.-. ++|-..--.+ ..|| +.+...+
T Consensus 175 L~TsCGSLAYSAPEILLGDsYDAPAVDiWS--LG---VILyMLVCGq~PF--qeANDSETLTmImDCKYtvP-shvS~eC 246 (864)
T KOG4717|consen 175 LTTSCGSLAYSAPEILLGDSYDAPAVDIWS--LG---VILYMLVCGQPPF--QEANDSETLTMIMDCKYTVP-SHVSKEC 246 (864)
T ss_pred hhcccchhhccCchhhhcCccCCcchhhhH--HH---HHHHHHHhCCCcc--ccccchhhhhhhhcccccCc-hhhhHHH
Confidence 1223678999999765555444432 34 6789999887643 4444333222 2244 5677888
Q ss_pred HHHHHhhcCCCcH--HHHHHHHHHhcCCC-----CCc------chh--hhhHHHHHHHcCCc-ccHHHHHHHHHhccCCc
Q 015541 263 EALLAVTFSEDPH--QDIVALLAKYSSDP-----EGE------APL--KLLLPQITSCFSSE-KSVRQIIEELKKHQSSA 326 (405)
Q Consensus 263 ~~l~~~~~~~~~~--~~i~~~l~~~~~~~-----~~~------~~l--~~~~~~i~~~f~~~-~~ve~i~~~Le~~~~~~ 326 (405)
..|++.++-.+|. ..++++...-..++ ... ..| +.....|++....+ .+-|+|+++|++..-..
T Consensus 247 rdLI~sMLvRdPkkRAslEeI~s~~Wlq~~D~~~sT~iPLvsr~~L~ee~Ha~IIq~Mv~G~IAs~e~Il~aLe~n~YNh 326 (864)
T KOG4717|consen 247 RDLIQSMLVRDPKKRASLEEIVSTSWLQAGDRGLSTAIPLVSRHHLPEEAHATIIQQMVAGAIASEEDILRALENNEYNH 326 (864)
T ss_pred HHHHHHHHhcCchhhccHHHHhccccccCCCCCccccCceeehhhCChHHHHHHHHHHhcccccCHHHHHHHHhccccch
Confidence 9999888888886 23444443322111 111 112 22444566666544 58899999999864210
Q ss_pred ---------cchhhHHHHHHHHHHhccCCchHHH
Q 015541 327 ---------ETSVAQWADEALQGMGKGAPFSLCL 351 (405)
Q Consensus 327 ---------~~~~~~wa~~~l~~l~~~SP~sl~v 351 (405)
+..+...-.+..+.++..+|.|+++
T Consensus 327 iTATYfLLAEr~Lr~~rEe~aq~~r~~~p~s~k~ 360 (864)
T KOG4717|consen 327 ITATYFLLAERVLRSYREEQAQELRRPDPISDKS 360 (864)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCCccccch
Confidence 0012234456667788899999998
No 162
>smart00250 PLEC Plectin repeat.
Probab=36.33 E-value=28 Score=22.84 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=17.0
Q ss_pred hcCCCCCcHHHHHHcCccce
Q 015541 232 MTGKRISTPSDALFAGLGTD 251 (405)
Q Consensus 232 ltG~~i~~a~eA~~~GLv~~ 251 (405)
.||++++ -.+|++.||++.
T Consensus 17 ~t~~~ls-v~eA~~~glid~ 35 (38)
T smart00250 17 ETGQKLS-VEEALRRGLIDP 35 (38)
T ss_pred CCCCCcC-HHHHHHcCCCCc
Confidence 3899999 999999999975
No 163
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=35.26 E-value=40 Score=34.64 Aligned_cols=91 Identities=15% Similarity=0.259 Sum_probs=55.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--eeCCCCCcccCCChhhHHHh---h--hhCCCCCchHH
Q 015541 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAE---I--QKDRNTPLVPK 149 (405)
Q Consensus 77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl--~g~g~~~FcaG~Dl~~~~~~---~--~~~~~~~~~~~ 149 (405)
|+.|.|. .|+....++|..++++++++. ++++|| ++.+++......++..+.-. + ........ ..
T Consensus 205 IGyI~I~------~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~-~~ 276 (406)
T COG0793 205 IGYIRIP------SFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKV-NV 276 (406)
T ss_pred EEEEEec------ccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCce-ee
Confidence 8888874 666677778999999999876 888887 56655566666666544320 0 00000000 00
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEECCcccccc
Q 015541 150 VFTAEYSLICKISEYKKPYISLMDGVTMGFG 180 (405)
Q Consensus 150 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG 180 (405)
++.. ..-...++|+|..||+....++
T Consensus 277 ~~~~-----~~~~~~~~PlvvLvn~~SASAs 302 (406)
T COG0793 277 YFSA-----SGEALYDGPLVVLVNEGSASAS 302 (406)
T ss_pred cccc-----ccccCCCCCEEEEECCCCccHH
Confidence 1110 0001568999999999986655
No 164
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=33.91 E-value=93 Score=29.73 Aligned_cols=74 Identities=18% Similarity=0.276 Sum_probs=44.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (405)
Q Consensus 77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (405)
-..|-+-..+ .|.-| +.++|+.+-.|+..+.|||-|.=+ +. .++...+|+...
T Consensus 204 slcvGiGGDp-FnGT~------FID~L~vFl~D~~t~GIiliGEIG------G~------------AEe~AA~flk~~-- 256 (329)
T KOG1255|consen 204 SLCVGIGGDP-FNGTN------FIDCLEVFLEDPETEGIILIGEIG------GS------------AEEEAAEFLKEY-- 256 (329)
T ss_pred eeEEeecCCC-CCCcc------HHHHHHHHhcCcccceEEEEeccC------Ch------------hhHHHHHHHHHh--
Confidence 3345554433 45544 567788888899999999998721 10 012223333321
Q ss_pred HHHHHHhCCCcEEEEECCcccccc
Q 015541 157 LICKISEYKKPYISLMDGVTMGFG 180 (405)
Q Consensus 157 l~~~i~~~~kPvIa~v~G~a~GgG 180 (405)
.-..-+||||++|-|...--|
T Consensus 257 ---nSg~~~kPVvsFIAG~tAppG 277 (329)
T KOG1255|consen 257 ---NSGSTAKPVVSFIAGVTAPPG 277 (329)
T ss_pred ---ccCCCCCceeEEeecccCCCc
Confidence 123578999999998764333
No 165
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=33.10 E-value=1.2e+02 Score=31.48 Aligned_cols=53 Identities=26% Similarity=0.323 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccc
Q 015541 98 KYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTM 177 (405)
Q Consensus 98 ~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~ 177 (405)
.+.+.++.+.+||++++|++..+|- . ..++|+ ...++... .||||+..-|..-
T Consensus 190 ~~~d~l~~l~~D~~t~~I~ly~E~~------~----------------~~~~f~----~aa~~a~~-~KPVv~~k~Grs~ 242 (447)
T TIGR02717 190 DESDLLEYLADDPDTKVILLYLEGI------K----------------DGRKFL----KTAREISK-KKPIVVLKSGTSE 242 (447)
T ss_pred CHHHHHHHHhhCCCCCEEEEEecCC------C----------------CHHHHH----HHHHHHcC-CCCEEEEecCCCh
Confidence 4567778888888888888887641 0 112233 33334444 8999999999864
No 166
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=31.85 E-value=84 Score=30.70 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=11.9
Q ss_pred CCCcEEEEECCccc
Q 015541 164 YKKPYISLMDGVTM 177 (405)
Q Consensus 164 ~~kPvIa~v~G~a~ 177 (405)
..||||+..-|..-
T Consensus 224 ~~KPVV~lk~Grs~ 237 (286)
T TIGR01019 224 MSKPVVGFIAGATA 237 (286)
T ss_pred CCCCEEEEEecCCC
Confidence 68999999988753
No 167
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=30.72 E-value=1.1e+02 Score=30.03 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=12.0
Q ss_pred CCCcEEEEECCccc
Q 015541 164 YKKPYISLMDGVTM 177 (405)
Q Consensus 164 ~~kPvIa~v~G~a~ 177 (405)
..||||+.--|..-
T Consensus 226 ~~KPVV~lk~Grs~ 239 (291)
T PRK05678 226 VTKPVVGYIAGVTA 239 (291)
T ss_pred CCCCEEEEEecCCC
Confidence 48999999999854
No 168
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=27.59 E-value=99 Score=26.22 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=32.0
Q ss_pred EEEEEEcCCCCCCCC--C----------HHHHHHHHHHHHHH--hcCCCceEEEEeeCC
Q 015541 77 VAVITLDRPKALNAM--N----------LDMDIKYKSFLDEW--ESDPRVKCVLIEGSG 121 (405)
Q Consensus 77 v~~ItLnrp~~~Nal--~----------~~m~~~L~~~l~~~--~~d~~v~~vvl~g~g 121 (405)
+..|+.+-|+|+..= + ...+.++.+.+... .+.+++++|||.|.|
T Consensus 25 ~~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 25 LQRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPG 83 (133)
T ss_dssp EEEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEEST
T ss_pred EEEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCH
Confidence 456888889987642 2 35566677777776 566789999999986
No 169
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=27.00 E-value=68 Score=33.04 Aligned_cols=65 Identities=18% Similarity=0.234 Sum_probs=42.9
Q ss_pred cccCCChhhHHHhhhhCCCCCchHHHHHHHHH-HHHHHH------hCCCc--EEEEECCccccccceecccccE
Q 015541 125 FCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS-LICKIS------EYKKP--YISLMDGVTMGFGIGISGHGRY 189 (405)
Q Consensus 125 FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~i~------~~~kP--vIa~v~G~a~GgG~~lal~~D~ 189 (405)
||.||||..+.+......-.....+|+..+-- ....++ +-=|| |..-=+|+.|=.=+-|++-|+.
T Consensus 158 yCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~~~ 231 (459)
T KOG0610|consen 158 YCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRCPV 231 (459)
T ss_pred cCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeeccccccCCC
Confidence 99999999988743333333445556655432 233333 33466 6666799999999999999954
No 170
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=26.97 E-value=23 Score=35.43 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=39.3
Q ss_pred HHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHHHcCCcccHHHHHHHH-Hh-ccCCccchhhHHHHHH
Q 015541 262 KEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEEL-KK-HQSSAETSVAQWADEA 337 (405)
Q Consensus 262 ~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f~~~~~ve~i~~~L-e~-~~~~~~~~~~~wa~~~ 337 (405)
+.++++......|. ...|++++.... ......+..+...+..+|.+++..|++.+++ ++ +. +.|..+.
T Consensus 256 a~~~a~~i~~~sp~a~~~~k~~l~~~~~-~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~-------p~~~~~~ 327 (342)
T PRK05617 256 AAKTADTLRSRSPTSLKVTLEQLRRARG-LTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRN-------PKWSPAT 327 (342)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCC-------CCCCCCC
Confidence 55555553333332 334555544322 1223345556667788888888899999886 55 54 5665444
Q ss_pred HH
Q 015541 338 LQ 339 (405)
Q Consensus 338 l~ 339 (405)
++
T Consensus 328 ~~ 329 (342)
T PRK05617 328 LE 329 (342)
T ss_pred hH
Confidence 43
No 171
>PRK04342 DNA topoisomerase VI subunit A; Provisional
Probab=26.16 E-value=70 Score=32.45 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=28.0
Q ss_pred CCCcEEEEECCccccccceecccccEEE-----EeCCeeeeCcccc-ccccC
Q 015541 164 YKKPYISLMDGVTMGFGIGISGHGRYRI-----VTEKTLLAMPENG-IGLFP 209 (405)
Q Consensus 164 ~~kPvIa~v~G~a~GgG~~lal~~D~ri-----ate~a~f~~PE~~-iGl~P 209 (405)
.+.|+.+.+||-.-| +.+++-|+. +-++..++.|..+ +|+.|
T Consensus 240 ~~lpv~~l~D~DP~G----~~I~~tyk~GS~~~a~~s~~l~~P~~kwlGl~~ 287 (367)
T PRK04342 240 LGLPVYVFTDGDPWG----YYIYSVVKYGSIKLAHLSERLATPDAKFIGVTP 287 (367)
T ss_pred cCCCEEEEECCCccH----HHHHHHHHhCchhhhhhhhhccCCCCEEecCcH
Confidence 479999999999865 345555665 3445556777665 55544
No 172
>PRK06091 membrane protein FdrA; Validated
Probab=25.32 E-value=1.5e+02 Score=31.78 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=16.3
Q ss_pred HHHHHHHhCCCcEEEEECCccc
Q 015541 156 SLICKISEYKKPYISLMDGVTM 177 (405)
Q Consensus 156 ~l~~~i~~~~kPvIa~v~G~a~ 177 (405)
++...+.++.||||+..-|..-
T Consensus 270 ~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 270 KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred HHHHHHhhCCCCEEEEEecCCc
Confidence 4444555679999999998754
No 173
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=23.95 E-value=28 Score=23.86 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=15.7
Q ss_pred hcCCCCCcHHHHHHcCccce
Q 015541 232 MTGKRISTPSDALFAGLGTD 251 (405)
Q Consensus 232 ltG~~i~~a~eA~~~GLv~~ 251 (405)
-||++++ -.+|++.||+|.
T Consensus 17 ~tg~~ls-v~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLS-VEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEE-HHHHHHTTSS-H
T ss_pred CCCeEEc-HHHHHHCCCcCH
Confidence 3688999 999999999974
No 174
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=21.14 E-value=2.9e+02 Score=27.30 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEee
Q 015541 89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEG 119 (405)
Q Consensus 89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g 119 (405)
--|+++.+.+|.+.+++.-+++++..+|+|.
T Consensus 55 s~~t~~~w~~la~~i~~~~~~~~~dG~VVtH 85 (323)
T smart00870 55 SNMTPADWLKLAKRINEALADDGYDGVVVTH 85 (323)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEec
Confidence 5688999999999998865666666666664
No 175
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=21.13 E-value=5.4e+02 Score=25.32 Aligned_cols=116 Identities=14% Similarity=0.135 Sum_probs=58.5
Q ss_pred CCCCCCHHHHHHHHHHH-HHHhcCCCceEEEEeeCCCCCcccCCC-hhhHHH----hhhhCCCCCchHHHHHHHHHHHHH
Q 015541 87 ALNAMNLDMDIKYKSFL-DEWESDPRVKCVLIEGSGPRAFCAGMD-IKGVVA----EIQKDRNTPLVPKVFTAEYSLICK 160 (405)
Q Consensus 87 ~~Nal~~~m~~~L~~~l-~~~~~d~~v~~vvl~g~g~~~FcaG~D-l~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~ 160 (405)
.+|.++.+-+.+-...+ ..+...+.-++.||-|.-.+.|--+-+ ...+.. ........-.+..--+.--++...
T Consensus 121 a~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~ 200 (311)
T PF06258_consen 121 APNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAA 200 (311)
T ss_pred CCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHH
Confidence 36999999877766554 445555666666666643466655444 112221 111111000000000000011112
Q ss_pred HHhC--CCcEEEEECCccccccceecccccEEEEeCCeeeeCcc
Q 015541 161 ISEY--KKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 202 (405)
Q Consensus 161 i~~~--~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE 202 (405)
|.+. +.|-+-.++|---+-=.++...||.+++|+++.=-+-|
T Consensus 201 L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsE 244 (311)
T PF06258_consen 201 LRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSE 244 (311)
T ss_pred HHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHH
Confidence 2222 34555455666555556788889999999987633334
No 176
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=20.62 E-value=2.1e+02 Score=28.11 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=11.3
Q ss_pred CCCcEEEEECCcc
Q 015541 164 YKKPYISLMDGVT 176 (405)
Q Consensus 164 ~~kPvIa~v~G~a 176 (405)
..||||+..-|..
T Consensus 232 ~~KPVV~lk~Grs 244 (300)
T PLN00125 232 TEKPVVAFIAGLT 244 (300)
T ss_pred CCCCEEEEEecCC
Confidence 3899999998876
No 177
>PRK14053 methyltransferase; Provisional
Probab=20.26 E-value=1.5e+02 Score=27.12 Aligned_cols=64 Identities=20% Similarity=0.241 Sum_probs=44.3
Q ss_pred eCcEEEEEEcCCC---CCCCCCHHHHH---HHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHh
Q 015541 74 PNGVAVITLDRPK---ALNAMNLDMDI---KYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAE 137 (405)
Q Consensus 74 ~~~v~~ItLnrp~---~~Nal~~~m~~---~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~ 137 (405)
+..|+++||..-- ..-|+...... .+...+..+-.||++|.+||.|.-.+..-+|--|..++..
T Consensus 21 ~S~VAVvTL~S~~~~~~gaAI~G~c~TENlGIEKvI~NvisNpNIRflilcG~Ev~GHltGqsL~aL~~N 90 (194)
T PRK14053 21 ESRIAVVTLASSIESFPEAAIWGSSKTENLGVEKIIVNVISNSNIRYVLLCGGESRGHLAGHSLLAIHAN 90 (194)
T ss_pred CCcEEEEEccccccccCCceEEeeccccccCHHHHHHHhhcCCCceEEEEecCccCCccccHHHHHHHHc
Confidence 4568888886431 11233322222 3667788888999999999999866678888888888763
No 178
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=20.25 E-value=1.4e+02 Score=29.51 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=52.1
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHH---hhhhCCCCCchH---H
Q 015541 76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA---EIQKDRNTPLVP---K 149 (405)
Q Consensus 76 ~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~---~~~~~~~~~~~~---~ 149 (405)
.|+.|.++. ++....+++.++++.++.. +++.+||-=. +..||++..... ........-... .
T Consensus 152 ~igYi~i~~------f~~~~~~~~~~~l~~l~~~-~~~~lIiDLR----~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g 220 (334)
T TIGR00225 152 SVGYIRISS------FSEHTTEDVKKALDKLEKK-NAKGYILDLR----GNPGGLLQSAVDISRLFITKGPIVQTKDRNG 220 (334)
T ss_pred EEEEEEEEe------cccchHHHHHHHHHHHHhc-cCceEEEEcC----CCCCCCHHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 488888864 3445677888888888653 5788888422 344566554211 110111000000 0
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEECCccccccceeccc
Q 015541 150 VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGH 186 (405)
Q Consensus 150 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~ 186 (405)
... .+.. ..-..+.+|++..+|+.+..++=.++.+
T Consensus 221 ~~~-~~~~-~~~~~~~~pv~vLvn~~TaSaaE~~a~~ 255 (334)
T TIGR00225 221 SKR-HYKA-NGRQPYNLPLVVLVNRGSASASEIFAGA 255 (334)
T ss_pred cce-EEec-CCCccCCCCEEEEECCCCCcHHHHHHHH
Confidence 000 0000 0011467999999999998776555543
Done!