BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015542
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 140/400 (35%), Positives = 194/400 (48%), Gaps = 42/400 (10%)
Query: 1 MAFTTTLLSWSVIEF--GSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMD 58
MA+T T+L+W +I+F G S L++ + A++W TDY +KA T + Y QVG + D
Sbjct: 65 MAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHT-SQNEFYGQVGQGDAD 123
Query: 59 HHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMK 118
H W RPEDM R YK+ T PGSD+ S+VF++ D +YS LL A +
Sbjct: 124 HAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHARQ 183
Query: 119 VFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHI 178
+FDFA+ YRG YSDS+ FY S + Y DEL+W A+WL+RA+ +++YL +S
Sbjct: 184 LFDFANNYRGKYSDSITDARN-FYAS-ADYRDELVWAAAWLYRATNDNTYLNTAESLYDE 241
Query: 179 LGAXXXXXXXXXXXKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQY 238
G K +G +VLL+K Q YK +Y+ LI Q
Sbjct: 242 FGLQNWGGGLNWDSKVSGVQVLLAK------LTNKQAYKDTVQSYVNYLINNQ-----QK 290
Query: 239 TAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDY 298
T GL Y L++ AF++L A+ + A + A+ Q+DY
Sbjct: 291 TPKGLLYIDMWGTLRHAANAAFIMLEAAEL-------------GLSASSYRQFAQTQIDY 337
Query: 299 ILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPN--V 356
LGD S++ GFG P HHR SS P A D N SP+PN V
Sbjct: 338 ALGD--GGRSFVCGFGSNPPTRPHHRSSSCPPAPATCDWNTFN---------SPDPNYHV 386
Query: 357 LTGAILGGPXXXXXXXXXXXXYQQSEPATYINAPFVGAVA 396
L+GA++GGP Y +E AT NA F A+A
Sbjct: 387 LSGALVGGPDQNDNYVDDRSDYVHNEVATDYNAGFQSALA 426
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 191 bits (486), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 138/407 (33%), Positives = 194/407 (47%), Gaps = 41/407 (10%)
Query: 1 MAFTTTLLSWSVIEF--GSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMD 58
MAFT T+L+W IE G + K +RW DY +KA +P LYVQVGD + D
Sbjct: 66 MAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAH-PSPNVLYVQVGDGDAD 124
Query: 59 HHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMK 118
H W E M R +KV PGSDV S+VF D DP+Y+ L++ A +
Sbjct: 125 HKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAKQ 184
Query: 119 VFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHI 178
++ FAD YRG YSD + + FY S+SGY DEL+WGA WL++A+ + SYLA +
Sbjct: 185 LYTFADTYRGVYSDCVPAGA--FYNSWSGYQDELVWGAYWLYKATGDDSYLAKAEYEYDF 242
Query: 179 LGAXXXXX------XXXXXXKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSS 232
L K GT VLL+K E Q+ Y ++ ++ G +
Sbjct: 243 LSTEQQTDLRSYRWTIAWDDKSYGTYVLLAK---ETGKQK---YIDDANRWLDYWTVGVN 296
Query: 233 SFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALA 292
+ Y+ GG+ + L+Y TAF+ L YAK + V+ + A
Sbjct: 297 GQRVPYSPGGMAVLDTWGALRYAANTAFVALVYAKVI----------DDPVRKQRYHDFA 346
Query: 293 KKQVDYILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSP 352
+Q++Y LGDNP SY+VGFG P++ HHR + H + D + S +
Sbjct: 347 VRQINYALGDNPRNSSYVVGFGNNPPRNPHHRTA----------HGSWTDS---IASPAE 393
Query: 353 NPNVLTGAILGGPXXXXXX-XXXXXXYQQSEPATYINAPFVGAVAFF 398
N +VL GA++GGP Y +E AT NA F A+A
Sbjct: 394 NRHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYNAGFSSALAML 440
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 154 bits (390), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 126/410 (30%), Positives = 183/410 (44%), Gaps = 53/410 (12%)
Query: 1 MAFTTTLLSWSVIEFGSSMQ-----NHLENAKAAIRWGTDYLLKASTATPGALYVQVGDP 55
M+++ +L W+V E+ + + NH+ N I+W DY +K Y QVGD
Sbjct: 87 MSYSAAMLGWAVYEYEDAFKQSGQYNHILNN---IKWACDYFIKCHPEKD-VYYYQVGDG 142
Query: 56 NMDHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKT 115
+ DH W E M R YKV +PGS V S++FK D YS + LK
Sbjct: 143 HADHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIFKKVDGEYSKECLKH 202
Query: 116 AMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSN 175
A ++F+FAD + SD + FY S+SG+ DEL W A WL+ A+ +SSYL +S
Sbjct: 203 AKELFEFADTTK---SDDGYTAANGFYNSWSGFYDELSWAAVWLYLATNDSSYLDKAESY 259
Query: 176 GHILGAXXXXXXXXXXXKRA------GTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIP 229
G + GT +LL++ ++ + + YK + ++
Sbjct: 260 SDKWGYEPQTNIPKYKWAQCWDDVTYGTYLLLAR--IKNDNGK---YKEAIERHLDWWTT 314
Query: 230 GSSSFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLI 289
G + + YT GL + +L+Y TTTAFL Y+ + NG KA+ +
Sbjct: 315 GYNGERITYTPKGLAWLDQWGSLRYATTTAFLACVYSDW--ENG-------DKEKAKTYL 365
Query: 290 ALAKKQVDYILGDNPAKMSYMVGFGERYPQHVHHR---GSSLPSIHAHPDHIACNDGFQY 346
A+ Q DY LG S++VGFGE P+ HHR GS S P+H
Sbjct: 366 EFARSQADYALG--STGRSFVVGFGENPPKRPHHRTAHGSWADSQMEPPEH--------- 414
Query: 347 LYSRSPNPNVLTGAILGGPXXXXXXXXXXXXYQQSEPATYINAPFVGAVA 396
+VL GA++GGP Y +E A NA FVG +A
Sbjct: 415 -------RHVLYGALVGGPDSTDNYTDDISNYTCNEVACDYNAGFVGLLA 457
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 188/412 (45%), Gaps = 58/412 (14%)
Query: 1 MAFTTTLLSWSVIEFGSSM--QNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMD 58
M++T T+LSW+V E+ + LE+ I W DY +K + Y QVGD + D
Sbjct: 88 MSYTGTMLSWAVYEYKDAFVKSGQLEHILNQIEWVNDYFVKCHPSKY-VYYYQVGDGSKD 146
Query: 59 HHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMK 118
H W E M R +KV+ +PGS V S+V KD +P+ + L+ A +
Sbjct: 147 HAWWGPAEVMQMERPSFKVTQSSPGSTVVAETAASLAAASIVLKDRNPTKAATYLQHAKE 206
Query: 119 VFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYL----AYIQS 174
+++FA+ + SD+ + +Y S+SG+ DEL W A WL+ A+ +S+YL +Y+Q+
Sbjct: 207 LYEFAEVTK---SDAGYTAANGYYNSWSGFYDELSWAAVWLYLATNDSTYLTKAESYVQN 263
Query: 175 NGHILGAXXXXXXXXXXXKRA--GTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSS 232
I G+ G +LL+K K+ + Q+ ++H D + G +
Sbjct: 264 WPKISGSNTIDYKWAHCWDDVHNGAALLLAK-ITGKDIYK-QIIESHLDYWTT----GYN 317
Query: 233 SFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALA 292
+ +YT GL + +L+Y TTTAFL Y+ ++ G + K E
Sbjct: 318 GERIKYTPKGLAWLDQWGSLRYATTTAFLAFVYSDWV---------GCPSTKKEIYRKFG 368
Query: 293 KKQVDYILGDNPAKMSYMVGFGERYPQHVHHR--------GSSLPSIHAHPDHIACNDGF 344
+ Q+DY LG A S++VGFG P+ HHR S+PS H H
Sbjct: 369 ESQIDYALGS--AGRSFVVGFGTNPPKRPHHRTAHSSWADSQSIPSYHRH---------- 416
Query: 345 QYLYSRSPNPNVLTGAILGGPXXXXXXXXXXXXYQQSEPATYINAPFVGAVA 396
L GA++GGP Y +E A NA FVGA+A
Sbjct: 417 -----------TLYGALVGGPGSDDSYTDDISNYVNNEVACDYNAGFVGALA 457
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 170/398 (42%), Gaps = 31/398 (7%)
Query: 1 MAFTTTLLSWSVIEFGSSMQN--HLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMD 58
M++T+ +L+WS+ E + + I+W DY +K + TPG Y QVGD D
Sbjct: 66 MSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCN-PTPGVYYYQVGDGGKD 124
Query: 59 HHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMK 118
H W E M R +KV PGS V +VVFK SDP+Y+ K + A
Sbjct: 125 HSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAKN 184
Query: 119 VFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHI 178
+FD ADK + SD+ Y S S + D+L W A WL+ A+ +S+YL +S
Sbjct: 185 LFDMADKAK---SDA-GYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYLDKAESYVPN 240
Query: 179 LGAXXXXXXXXXXXKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQY 238
G + V L QLYK + + G + + Y
Sbjct: 241 WGKEQQTDIIAYKWGQCWDDVHYGAELLLAKLTNKQLYKDSIEMNLDFWTTGVNGTRVSY 300
Query: 239 TAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDY 298
T GL + +L++ TT AFL YA++ G + K K Q+DY
Sbjct: 301 TPKGLAWLFQWGSLRHATTQAFLAGVYAEWE---------GCTPSKVSVYKDFLKSQIDY 351
Query: 299 ILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLT 358
LG S++VG+G PQH HHR + H + D + S + + + +
Sbjct: 352 ALGS--TGRSFVVGYGVNPPQHPHHRTA----------HGSWTD---QMTSPTYHRHTIY 396
Query: 359 GAILGGPXXXXXXXXXXXXYQQSEPATYINAPFVGAVA 396
GA++GGP Y +E A NA F GA+A
Sbjct: 397 GALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALA 434
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 170/398 (42%), Gaps = 31/398 (7%)
Query: 1 MAFTTTLLSWSVIEFGSSMQN--HLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMD 58
M++T+ +L+WS+ E + + I+W DY +K + TPG Y QVGD D
Sbjct: 66 MSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCN-PTPGVYYYQVGDGGKD 124
Query: 59 HHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMK 118
H W E M R +KV PGS V +VVFK SDP+Y+ K + A
Sbjct: 125 HSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAKN 184
Query: 119 VFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHI 178
+FD ADK + SD+ Y S S + D+L W A WL+ A+ +S+YL +S
Sbjct: 185 LFDMADKAK---SDA-GYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYLDKAESYVPN 240
Query: 179 LGAXXXXXXXXXXXKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQY 238
G + V L QLYK + + G + + Y
Sbjct: 241 WGKEQQTDIIAYKWGQXWDDVHYGAELLLAKLTNKQLYKDSIEMNLDFWTTGVNGTRVSY 300
Query: 239 TAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDY 298
T GL + +L++ TT AFL YA++ G + K K Q+DY
Sbjct: 301 TPKGLAWLFQWGSLRHATTQAFLAGVYAEWE---------GCTPSKVSVYKDFLKSQIDY 351
Query: 299 ILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLT 358
LG S++VG+G PQH HHR + H + D + S + + + +
Sbjct: 352 ALGS--TGRSFVVGYGVNPPQHPHHRTA----------HGSWTD---QMTSPTYHRHTIY 396
Query: 359 GAILGGPXXXXXXXXXXXXYQQSEPATYINAPFVGAVA 396
GA++GGP Y +E A NA F GA+A
Sbjct: 397 GALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALA 434
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 110/403 (27%), Positives = 172/403 (42%), Gaps = 54/403 (13%)
Query: 2 AFTTTLLSWSVIEFGSSMQNHLENAK--AAIRWGTDYLLKASTATPGALYVQVGDPNMDH 59
++ +L WS+ EF S K +++ TDY LK S Y QVG+ N DH
Sbjct: 68 GYSAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLK-SHPNSTTFYYQVGEGNADH 126
Query: 60 HCWERPEDMDTPR-NVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMK 118
W PE+ R ++YK +P SD+ + +K+ D +Y+TK L A +
Sbjct: 127 TYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKCLNAAKE 186
Query: 119 VFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHI 178
++ +G + FY + S + D+L W A+WL+ A+ +S+Y+ +
Sbjct: 187 LYAMGKANQGVGNGQ------SFYQATS-FGDDLAWAATWLYTATNDSTYITDAEQF-IT 238
Query: 179 LGAXXXXXXXXXXXKRAGTKVLLSKGFLEKNTQEFQLYKAHSD---NYICSLIPGSSSFQ 235
LG + + Q+YK + NY + Q
Sbjct: 239 LGNTMNENKMQDKWTMCWDDMYVPAALRLAQITGKQIYKDAIEFNFNYWKT--------Q 290
Query: 236 AQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQ 295
T GGL + ++ L+Y + ++L Y K ++L+ LAKKQ
Sbjct: 291 VTTTPGGLKWLSNWGVLRYAAAESMVMLVYCKQNPD--------------QSLLDLAKKQ 336
Query: 296 VDYILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNP- 354
VDYILGDNPA MSY++G+G + H HHR + +G+ Y + P
Sbjct: 337 VDYILGDNPANMSYIIGYGSNWCIHPHHRAA---------------NGYTYANGDNAKPA 381
Query: 355 -NVLTGAILGGPXXXXXXXXXXXXYQQSEPATYINAPFVGAVA 396
++LTGA++GGP YQ +E A NA VG +A
Sbjct: 382 KHLLTGALVGGPDQNDKFLDDANQYQYTEVALDYNAGLVGVLA 424
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 109/421 (25%), Positives = 170/421 (40%), Gaps = 64/421 (15%)
Query: 2 AFTTTLLSWSVIEFGSSMQ--NHLENAKAAIRWGTDYLLKAS----TATPGALYVQVGDP 55
A+ + + W EF + +A+ +R+ DY ++ + + A QVGD
Sbjct: 128 AYAASTVGWGYYEFKDQFRATGQAVHAEVILRYFNDYFMRCTFRDASGNVVAFCHQVGDG 187
Query: 56 NMDHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKT 115
++DH W PE+ R + ++ + PG+D+ + FKD+DP Y+ K L
Sbjct: 188 DIDHAFWGAPENDTMFRRGWFITKEKPGTDIISATAASLAINYMNFKDTDPQYAAKSLDY 247
Query: 116 AMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLA----- 170
A +FDFA+K + Y S + D+ W A+WL+ A+QN YL
Sbjct: 248 AKALFDFAEKNPKGVVQGEDGPKG--YYGSSKWQDDYCWAAAWLYLATQNEHYLDEAFKY 305
Query: 171 --YIQSNGHILGAXXXXXXXXXXXKRAGTKVLLSK--GFLEKNTQEFQ-LYKAHSDNY-- 223
Y G I +GT +L++ +K++Q F+ YK S+
Sbjct: 306 YDYYAPPGWI---------HCWNDVWSGTACILAEINDLYDKDSQNFEDRYKRASNKNQW 356
Query: 224 --------ICSLIPGSSSFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGV 275
I L+ S T GG + + +Y T + L Y K+
Sbjct: 357 EQIDFWKPIQDLLDKWSGGGITVTPGGYVFLNQWGSARYNTAAQLIALVYDKHH------ 410
Query: 276 ATCGSSTVKAENLIALAKKQVDYILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHP 335
G + K N A+ Q+DY+LG NP Y+VG+ ++ HHR +S
Sbjct: 411 ---GDTPSKYANW---ARSQMDYLLGKNPLNRCYVVGYSSNSVKYPHHRAAS-------- 456
Query: 336 DHIACNDGFQYLYSRSPNPNVLTGAILGGPXXXXXXXXXXXXYQQSEPATYINAPFVGAV 395
G + SP+ VL GA++GGP Y +E A NA FVGA
Sbjct: 457 -------GLKDANDSSPHKYVLYGALVGGPDASDQHVDRTNDYIYNEVAIDYNAAFVGAC 509
Query: 396 A 396
A
Sbjct: 510 A 510
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 291 LAKKQVDYILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSR 350
+A++ DY+ G NP Y+ GFG+R +H HHR PS+ DH +
Sbjct: 430 VAQRAADYLFGANPLGQCYVTGFGQRPVRHPHHR----PSVADDVDHPVPG-----MVVG 480
Query: 351 SPNPNV---LTGAILGGPXXXXXXXXXXXXYQQSEPATYINAPFVGAVA 396
PN ++ + A L G Y +E A Y N+P V +A
Sbjct: 481 GPNRHLQDEIARAQLAGRPAMEAYIDHQDSYSTNEVAVYWNSPAVFVIA 529
>pdb|1UT9|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 609
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 296 VDYILGDNPAKMSYMVGFGERYPQHVHHR 324
+ Y+LG N SY+ G+GER Q+ H R
Sbjct: 504 ISYLLGRNAMDQSYVTGYGERPLQNPHDR 532
>pdb|1RQ5|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 610
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 296 VDYILGDNPAKMSYMVGFGERYPQHVHHR 324
+ Y+LG N SY+ G+GER Q+ H R
Sbjct: 504 ISYLLGRNAMDQSYVTGYGERPLQNPHDR 532
>pdb|2Z59|A Chain A, Complex Structures Of Mouse Rpn13 (22-130aa) And
Ubiquitin
Length = 109
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 38 LKASTATP----GALYVQVGDPNMDHHCWE 63
LK +T TP G +Y+Q D ++ H CW+
Sbjct: 12 LKGTTVTPDKRKGLVYIQQTDDSLIHFCWK 41
>pdb|4A1G|A Chain A, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|B Chain B, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|C Chain C, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|D Chain D, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
Length = 152
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 104 SDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLD---ELLWGASWLH 160
+DP + + LK A D + Y+ + ++ P Y +++G+L+ EL ++ L
Sbjct: 66 NDPRFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125
Query: 161 RASQNSS 167
R QN +
Sbjct: 126 RGIQNQA 132
>pdb|2LAH|A Chain A, Solution Nmr Structure Of Mitotic Checkpoint
SerineTHREONINE-Protein Kinase Bub1 N-Terminal Domain
From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr5460a (Methods Development)
Length = 160
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 104 SDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLD---ELLWGASWLH 160
+DP + + LK A D + Y+ + ++ P Y +++G+L+ EL ++ L
Sbjct: 74 NDPRFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 133
Query: 161 RASQNSS 167
R QN +
Sbjct: 134 RGIQNQA 140
>pdb|2CMZ|A Chain A, Crystal Structure Of Vsv-Indiana (Mudd-Summers Strain)
Glycoprotein Under Its Acidic Conformation
pdb|2CMZ|B Chain B, Crystal Structure Of Vsv-Indiana (Mudd-Summers Strain)
Glycoprotein Under Its Acidic Conformation
pdb|2CMZ|C Chain C, Crystal Structure Of Vsv-Indiana (Mudd-Summers Strain)
Glycoprotein Under Its Acidic Conformation
Length = 423
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 21/109 (19%)
Query: 214 QLYKAHSDNYICSLIPGSSSFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNG 273
Q NYIC + S+++ + Y GL +SNL + T F S +G
Sbjct: 147 QFINGKCSNYICPTVHNSTTWHSDYKVKGL----CDSNLISMDITFF---------SEDG 193
Query: 274 GVATCGSS-TVKAENLIALAKKQVDYILGDNPAKMSYMVGFGERYPQHV 321
+++ G T N A Y G KM Y +G R P V
Sbjct: 194 ELSSLGKEGTGFRSNYFA-------YETGGKACKMQYCKHWGVRLPSGV 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,765,231
Number of Sequences: 62578
Number of extensions: 459447
Number of successful extensions: 936
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 883
Number of HSP's gapped (non-prelim): 23
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)