BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015543
(405 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis
thaliana GN=MBP1 PE=1 SV=1
Length = 386
Score = 512 bits (1319), Expect = e-144, Method: Compositional matrix adjust.
Identities = 276/405 (68%), Positives = 333/405 (82%), Gaps = 27/405 (6%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLEATMICIDNSEWMRNGDYSPSRL+AQ +AV+L+CGAKTQSNPENTVGILTM GKGVR
Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVR 60
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VLTTPT+DLGKILACMH LD+GGE+N+ A IQ+AQLALKHRQNKNQRQRIIVFAGSP+KY
Sbjct: 61 VLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKY 120
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDD-GKPEKLEALLAAVNNNDSSHLVHVPTGPNA 179
++K +E++GK+LKKNSV++DIVNFGEDDD KP+KLEALL AVNNND SH+VHVP+G NA
Sbjct: 121 EKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSGANA 180
Query: 180 LSDVLISSPVFTADGEGGSGFAAAAAAAAAGGVSDFDFGVDPNIDPELALALRVSMEEER 239
LSDVL+S+PVFT D EG SG+ +AAAAAAA G DFDFGVDPNIDPELALALRVSMEEER
Sbjct: 181 LSDVLLSTPVFTGD-EGASGYVSAAAAAAAAG-GDFDFGVDPNIDPELALALRVSMEEER 238
Query: 240 ARQEAAAKRAADEASRQGKEEEPLSNSQDATMTDNTNNTAAETTEKTADPMDEEKSLLER 299
ARQEAAAK+AADEA ++ K+ + S SQ+ T A TT+K A+PMDE+ +LL++
Sbjct: 239 ARQEAAAKKAADEAGQKDKDGDTASASQE---------TVARTTDKNAEPMDEDSALLDQ 289
Query: 300 AFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSDMSKVLGDQSF 359
A AMS+G D + S+A DED++LALALQMSM + + + + +LG+Q+F
Sbjct: 290 AIAMSVG---------DVNMSEAADEDQDLALALQMSMSGEESSEATGAG-NNLLGNQAF 339
Query: 360 VSSILTSLPGVDPNDPSVKDLIASL-----QGQPESSEQKKKEDE 399
+SS+L+SLPGVDPNDP+VK+L+ASL + + E S KK EDE
Sbjct: 340 ISSVLSSLPGVDPNDPAVKELLASLPDESKRTEEEESSSKKGEDE 384
>sp|P55035|PSMD4_DROME 26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila
melanogaster GN=Pros54 PE=1 SV=2
Length = 396
Score = 274 bits (701), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 165/403 (40%), Positives = 230/403 (57%), Gaps = 42/403 (10%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLE+TMIC DNS++ RNGDY P+RL Q D ++L+C K +SNPEN VG++T+ V
Sbjct: 1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VE 59
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VL T T+D G+I + MH + GE+N+ GI++A L LKHRQ KN + RI+VF GSP+ +
Sbjct: 60 VLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINH 119
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPN 178
+ + K+LKK V +DIV+FG D E L A + A+N D SHLV VP G +
Sbjct: 120 EEGDLVKQAKRLKKEKVNVDIVSFG-DHGNNNEILTAFINALNGKDGTGSHLVSVPRG-S 177
Query: 179 ALSDVLISSPVFTADGEGGSGFAAAAAAAAAGGVSDFDFGVDPNIDPELALALRVSMEEE 238
LSD L+SSP+ + A G + F+FGVDPN DPELALALRVSMEE+
Sbjct: 178 VLSDALLSSPIIQGED---------GMGGAGLGGNVFEFGVDPNEDPELALALRVSMEEQ 228
Query: 239 RARQEAAAKRAADEASRQGKEEEPLSNSQDATMTDNTNNTAAETTEKTADPMDEEKSLLE 298
R RQE+ +RA + + + + N + AE T E+++L+
Sbjct: 229 RQRQESEQRRANPDGAPPTGGDAGGGGGVSGSGPGNEESAGAENEANT------EEAMLQ 282
Query: 299 RAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQS---------- 348
RA A+S T + D + T+E+ ++A A+QMSMQD D Q
Sbjct: 283 RALALSTETPEDNL----PDFANMTEEE-QIAFAMQMSMQDAPDDSVTQQAKRPKTDEAN 337
Query: 349 -------DMSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIASL 384
D S+V+GD +F+ S+L +LPGVDP +V+D + SL
Sbjct: 338 APMDVDEDYSEVIGDPAFLQSVLENLPGVDPQSEAVRDAVGSL 380
>sp|O35226|PSMD4_MOUSE 26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus
GN=Psmd4 PE=1 SV=1
Length = 376
Score = 269 bits (688), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 176/394 (44%), Positives = 237/394 (60%), Gaps = 40/394 (10%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F GSPV+
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPN 178
+ K + + K+LKK V +DI+NFGE++ EKL A + +N D SHLV VP GP
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEEEVNT-EKLTAFVNTLNGKDGTGSHLVTVPPGP- 177
Query: 179 ALSDVLISSPVFTADGEGGSGFAAAAAAAAAGGVSDFDFGVDPNIDPELALALRVSMEEE 238
+L+D LISSP+ GEGG A G SDF+FGVDP+ DPELALALRVSMEE+
Sbjct: 178 SLADALISSPILA--GEGG--------AMLGLGASDFEFGVDPSADPELALALRVSMEEQ 227
Query: 239 RARQEAAAKRAADEASRQGKEEEPLSNSQDATMTDNTNNTAAETTEKTAD--PMDEEKSL 296
R RQE A+RAA ++ + P + D + T N D M EE+ +
Sbjct: 228 RQRQEEEARRAAAASAAEAGIATPGTEDSDDALLKMTINQQEFGRPGLPDLSSMTEEEQI 287
Query: 297 LERAFAMSM---GTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSDMSKV 353
A+AM M GT S S AD D S A DT DP + D V
Sbjct: 288 ---AYAMQMSLQGTEFSQES-ADMDASSAM----------------DTSDPVKEEDDYDV 327
Query: 354 LGDQSFVSSILTSLPGVDPNDPSVKDLIASLQGQ 387
+ D F+ S+L +LPGVDPN+ +++ ++ +L Q
Sbjct: 328 MQDPEFLQSVLENLPGVDPNNAAIRSVMGALASQ 361
>sp|Q58DA0|PSMD4_BOVIN 26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus
GN=PSMD4 PE=2 SV=1
Length = 382
Score = 266 bits (679), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 241/394 (61%), Gaps = 39/394 (9%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F GSPV+
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPN 178
+ K + + K+LKK V +DI+NFGE++ EKL A + +N D SHLV VP GP
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEEEVNT-EKLTAFVNTLNGKDGTGSHLVTVPPGP- 177
Query: 179 ALSDVLISSPVFTADGEGGSGFAAAAAAAAAGGVSDFDFGVDPNIDPELALALRVSM-EE 237
+L+D LISSP+ GEGG A G SDF+FGVDP+ DPELALALRVSM E+
Sbjct: 178 SLADALISSPILA--GEGG--------AMLGLGASDFEFGVDPSADPELALALRVSMEEQ 227
Query: 238 ERARQEAAAKRAADEASRQGKEEEPLSNSQDATMTDNTNNTAAETTEKTADP----MDEE 293
+ ++E A + AA A+ G +S DA + + + +T P M EE
Sbjct: 228 RQRQEEEARRAAAASAAEAGIATAGTEDSDDALL---KMTISQQEFGRTGLPDLSSMTEE 284
Query: 294 KSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSDMSKV 353
+ + A+AM M S+ A+ +A D + + A+ DT +P+ + D V
Sbjct: 285 EQI---AYAMQM-------SLQGAEFGQAESADMDASSAM------DTSEPTKEEDDYDV 328
Query: 354 LGDQSFVSSILTSLPGVDPNDPSVKDLIASLQGQ 387
+ D F+ S+L +LPGVDPN+ ++++ + SL Q
Sbjct: 329 MQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQ 362
>sp|P55036|PSMD4_HUMAN 26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens
GN=PSMD4 PE=1 SV=1
Length = 377
Score = 266 bits (679), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 170/397 (42%), Positives = 236/397 (59%), Gaps = 45/397 (11%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F GSPV+
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPN 178
+ K + + K+LKK V +DI+NFGE++ EKL A + +N D SHLV VP GP
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEEEVNT-EKLTAFVNTLNGKDGTGSHLVTVPPGP- 177
Query: 179 ALSDVLISSPVFTADGEGGSGFAAAAAAAAAGGVSDFDFGVDPNIDPELALALRVSM-EE 237
+L+D LISSP+ GEGG A G SDF+FGVDP+ DPELALALRVSM E+
Sbjct: 178 SLADALISSPILA--GEGG--------AMLGLGASDFEFGVDPSADPELALALRVSMEEQ 227
Query: 238 ERARQEAAAKRAADEASRQGKEEEPLSNSQDATMTDNTNNTAAETTEKTADP----MDEE 293
+ ++E A + AA A+ G +S DA + + + +T P M EE
Sbjct: 228 RQRQEEEARRAAAASAAEAGIATTGTEDSDDALL---KMTISQQEFGRTGLPDLSSMTEE 284
Query: 294 KSLLERAFAMSM---GTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSDM 350
+ + A+AM M G AD D S A DT +P+ + D
Sbjct: 285 EQI---AYAMQMSLQGAEFGQAESADIDASSAM----------------DTSEPAKEEDD 325
Query: 351 SKVLGDQSFVSSILTSLPGVDPNDPSVKDLIASLQGQ 387
V+ D F+ S+L +LPGVDPN+ ++++ + SL Q
Sbjct: 326 YDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQ 362
>sp|Q553E0|PSMD4_DICDI 26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium
discoideum GN=psmD4 PE=2 SV=1
Length = 349
Score = 251 bits (641), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 152/382 (39%), Positives = 211/382 (55%), Gaps = 65/382 (17%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
M LEAT++C+DNSEWMRNGD++PSR AQ DAV+LIC +KTQSNPE+ V I++M GK
Sbjct: 1 MTLEATIVCLDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPE 60
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VL T T +L KIL+ EL I G+++ + +Q+AQLAL+HRQN +Q RII F GSP+K
Sbjct: 61 VLVTLTQELSKILSGAQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKE 120
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNAL 180
++ + + K+LKKN VA+DI+NFGE + +KLEA + VNNND SHL+ VP GP+ L
Sbjct: 121 TKEELIQLAKRLKKNGVAVDIINFGEVTENS-DKLEAFINDVNNNDESHLLTVPPGPHIL 179
Query: 181 SDVLISSPVF-TADGEGGSGFAAAAAAAAAGGVSDFDFGVDPNIDPELALALRVSM---- 235
SD+++ SP+ + G+ GS F ++ + DP+LA+AL++S+
Sbjct: 180 SDIILQSPIVESGSGQFGSEF------------------INADTDPDLAMALKLSLEEEK 221
Query: 236 ----EEERARQEAAAKRAADEASRQGKEEEPLSNSQDATMTDNTNNTAAETTEKTADPMD 291
E +AR+EA + P ++ D D DP
Sbjct: 222 QRQERERKAREEANGGSTNSGTTTTTA---PTESNMDVNFED--------------DPE- 263
Query: 292 EEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSDMS 351
L A A+SM T + S T+ D + Q DDT S
Sbjct: 264 -----LAEALALSMATDKMEVQ------SSTTNTDSQPPQQQQQPPTDDTS--------S 304
Query: 352 KVLGDQSFVSSILTSLPGVDPN 373
+ DQ F++S L SLPGVDPN
Sbjct: 305 EAFKDQDFLNSTLNSLPGVDPN 326
>sp|O94444|RPN10_SCHPO 26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpn10 PE=1 SV=1
Length = 243
Score = 244 bits (624), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 125/260 (48%), Positives = 168/260 (64%), Gaps = 17/260 (6%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLEATMI IDNSEWM NGDY P+R AQ D V +I K NPEN G++T+G +
Sbjct: 1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ 60
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VL+T T D GK L+ MH+L + G GIQ+AQLALKHR+NK QRQRI+ F GSP+
Sbjct: 61 VLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVE 120
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNAL 180
D K + + K++KKN+VAIDI++ GE + L+ + A N++DS HLV +P P L
Sbjct: 121 DEKNLIRLAKRMKKNNVAIDIIHIGELQN--ESALQHFIDAANSSDSCHLVSIPPSPQLL 178
Query: 181 SDVLISSPVFTADGEGGSGFAAAAAAAAAGGVSDFDFGVDPNIDPELALALRVSMEEERA 240
SD++ SP+ G G A+ + F++GVDPN+D ELALAL +SM EERA
Sbjct: 179 SDLVNQSPI-------GQGVVASQ--------NQFEYGVDPNLDVELALALELSMAEERA 223
Query: 241 RQEAAAKRAADEASRQGKEE 260
RQE AA+++++E + +E
Sbjct: 224 RQEVAAQKSSEETEDKKMQE 243
>sp|A2A3N6|PIPSL_HUMAN Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL
PE=5 SV=1
Length = 862
Score = 228 bits (582), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 156/390 (40%), Positives = 218/390 (55%), Gaps = 35/390 (8%)
Query: 3 LEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVL 62
L+ +DNSE+M NGD+ P+RL+AQ DAV+ +C +KT+SNPEN VG++T+ VL
Sbjct: 488 LQMLTTSVDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITLDND-CEVL 546
Query: 63 TTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDR 122
TT T D G+IL+ +H + G++ GI VA LALKHRQ N + RII F G+PV+ +
Sbjct: 547 TTLTPDTGRILSKLHTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVEDNE 606
Query: 123 KVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNAL 180
K + + K LKK V +DI+NFGE++ EKL A + +N D SHLV VP GP +L
Sbjct: 607 KNLVKLAKCLKKEKVNVDIINFGEEEVNT-EKLTAFVNTLNGKDGTGSHLVTVPPGP-SL 664
Query: 181 SDVLISSPVFTADGEGGSGFAAAAAAAAAGGVSDFDFGVDPNIDPELALALRVSM-EEER 239
+D LIS P+ GEGG A G SDF+FGVDP+ DPELAL LRV M E+ +
Sbjct: 665 ADALISFPILA--GEGG--------AMMGLGASDFEFGVDPSADPELALVLRVFMEEQRQ 714
Query: 240 ARQEAAAKRAADEASRQGKEEEPLSNSQDATMTDN-TNNTAAETTEKTADPMDEEKSLLE 298
++E A + AA A+ G +S DA + + T M EE+ ++
Sbjct: 715 RQEEEARQAAAASAAEAGIATTGTEDSDDALLKMTISQQEFGHTGLPDLSSMTEEEKIV- 773
Query: 299 RAFAMSM-GTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSDMSKVLGDQ 357
A MS+ G AD D S A DT +P+ + D V+ D
Sbjct: 774 CAMQMSLQGAEFGLAESADIDASSAM----------------DTSEPAKEEDDYDVMQDP 817
Query: 358 SFVSSILTSLPGVDPNDPSVKDLIASLQGQ 387
F+ S+L +LPGVDPN+ ++++ + SL Q
Sbjct: 818 EFLQSVLENLPGVDPNNEAIRNAVGSLASQ 847
>sp|P38886|RPN10_YEAST 26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN10 PE=1 SV=3
Length = 268
Score = 216 bits (549), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 157/237 (66%), Gaps = 3/237 (1%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLEAT++ IDNSE+ RNGD+ +R AQ D+V I AK SNPENTVG+++ G R
Sbjct: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VL+T T + GKILA +H+ I G++++A +Q+AQL LKHRQNK Q QRI+ F SP+
Sbjct: 61 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD 120
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNN--NDSSHLVHVPTGPN 178
R + + K LKKN+VA+DI+NFGE + E L+ +AAVNN ++SHL+ V GP
Sbjct: 121 SRDELIRLAKTLKKNNVAVDIINFGEIEQNT-ELLDEFIAAVNNPQEETSHLLTVTPGPR 179
Query: 179 ALSDVLISSPVFTADGEGGSGFAAAAAAAAAGGVSDFDFGVDPNIDPELALALRVSM 235
L + + SSP+ +G G G + + + DFGVDP++DPELA+ALR+SM
Sbjct: 180 LLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSM 236
>sp|O17453|PSMD4_SCHMA 26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma
mansoni PE=2 SV=2
Length = 420
Score = 215 bits (547), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 148/418 (35%), Positives = 218/418 (52%), Gaps = 54/418 (12%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
M EAT+I +DNS++MRNGD+ P+RL+AQ DAV LIC +K Q NPENT+G+L++
Sbjct: 1 MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLAN--TE 58
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VL T T D+ KI +H ++ G + + I++A LAL+HRQ ++Q+ RI+ F GSP+
Sbjct: 59 VLCTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILE 118
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPN 178
D K + + K+LKK V +DI+NFGE++ + +KL + +N D SHL+ V G
Sbjct: 119 DEKELTRLAKRLKKEKVNVDIINFGENETNE-QKLSEFIDTLNGKDGTGSHLISVAPG-T 176
Query: 179 ALSDVLISSPVFTADGEGGSGFAAAAAAAAAGGVSDFDFGVDPNIDPELALALRVSMEEE 238
L D L++SPV GE GSG A A +FG+D DP+L ALRVSME++
Sbjct: 177 VLHDTLMTSPVVA--GEDGSGMAGAGLG--------LEFGLDGAEDPDLLYALRVSMEDQ 226
Query: 239 RARQEA--------AAKRAADEASRQGKEEEPLSNSQDATMTDNTNNTAAETTEKTADPM 290
R RQE + A + G EE + Q M+ NNT E ++ PM
Sbjct: 227 RMRQEHEVNGDGSNTSVVATSLPAGSGTSEEAMLQ-QALAMSMQMNNT-----ESSSLPM 280
Query: 291 D------EEKSLLERAFAMS---MGTSVSDTSMADADTSKATDEDKELALALQMSMQDDT 341
D E+ + A MS MG + + ++ K E +A+ + + T
Sbjct: 281 DIDLAAMSEEDQIAYALRMSLQQMGEETTQPTTTTLESDKTIVEPSGVAMDIDQTPTKVT 340
Query: 342 KDPSNQSDMSK---------------VLGDQSFVSSILTSLPGVDPNDPSVKDLIASL 384
++P+ S V+ D F+ S+L SLPGVD + V+ I +L
Sbjct: 341 ENPNLSSSSGTLAAATSAVPTSADLDVMYDAEFLESVLQSLPGVDTQNEDVRKAINAL 398
>sp|Q6P1K8|T2H2L_HUMAN General transcription factor IIH subunit 2-like protein OS=Homo
sapiens GN=GTF2H2C PE=2 SV=1
Length = 395
Score = 35.0 bits (79), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 4/146 (2%)
Query: 2 VLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRV 61
++ + +D S M + D P+RL + NP + +GI+ K
Sbjct: 57 MMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEK 116
Query: 62 LTTPTTDLGKILACMHE---LDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPV 118
LT + + K + + E + GE ++ + +A LKH R+ +I+F+
Sbjct: 117 LTELSGNPRKHITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTT 176
Query: 119 KYDRKVMEMIGKKLKKNSVAIDIVNF 144
+ ++I K LK + + ++
Sbjct: 177 CDPSNIYDLI-KTLKAAKIRVSVIGL 201
>sp|Q2TBV5|TF2H2_BOVIN General transcription factor IIH subunit 2 OS=Bos taurus GN=GTF2H2
PE=2 SV=1
Length = 395
Score = 35.0 bits (79), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 12/150 (8%)
Query: 2 VLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRV 61
++ + +D S M + D P+RL + NP + +GI+ K
Sbjct: 57 MMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEK 116
Query: 62 LT-------TPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFA 114
LT T L K + ++ GE ++ + +A LKH R+ +I+F+
Sbjct: 117 LTELSGNPRKHITSLKKAV----DMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFS 172
Query: 115 GSPVKYDRKVMEMIGKKLKKNSVAIDIVNF 144
+ ++I K LK + + I+
Sbjct: 173 SLTTCDPSNIYDLI-KSLKAAKIRVSIIGL 201
>sp|Q13888|TF2H2_HUMAN General transcription factor IIH subunit 2 OS=Homo sapiens
GN=GTF2H2 PE=1 SV=1
Length = 395
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 12/150 (8%)
Query: 2 VLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRV 61
++ + +D S M + D P+RL + NP + +GI+ K
Sbjct: 57 MMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEK 116
Query: 62 LT-------TPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFA 114
LT T L K + ++ GE ++ + +A LKH R+ +I+F+
Sbjct: 117 LTELSGNPRKHITSLKKAV----DMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFS 172
Query: 115 GSPVKYDRKVMEMIGKKLKKNSVAIDIVNF 144
+ ++I K LK + + ++
Sbjct: 173 SLTTCDPSNIYDLI-KTLKAAKIRVSVIGL 201
>sp|A0JN27|TF2H2_RAT General transcription factor IIH subunit 2 OS=Rattus norvegicus
GN=Gtf2h2 PE=2 SV=1
Length = 396
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/146 (19%), Positives = 59/146 (40%), Gaps = 4/146 (2%)
Query: 2 VLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRV 61
++ + +D S M + D P+RL + NP + +GI+ K
Sbjct: 57 MMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEK 116
Query: 62 LTTPTTDLGKILACMHE---LDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPV 118
LT + + K + + + + GE ++ + +A LKH R+ +I+F+
Sbjct: 117 LTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTT 176
Query: 119 KYDRKVMEMIGKKLKKNSVAIDIVNF 144
+ ++I K LK + + ++
Sbjct: 177 CDPSNIYDLI-KTLKTAKIRVSVIGL 201
>sp|P0C7Q8|DA1_ARATH Protein DA1 OS=Arabidopsis thaliana GN=DA1 PE=1 SV=1
Length = 532
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 260 EEPLSNSQDATMTDNTNNTAAETTEKTADPMDEEKSLLERAFAMSMGTSVSDTSMADADT 319
+EP + +T DNT+N D+E ++RA A+S+ + +
Sbjct: 50 DEPHHTQEPSTSEDNTSN-------------DQENEDIDRAIALSLLEENQEQTSISGKY 96
Query: 320 SKATDEDKELALALQMSM 337
S DED++LA ALQ SM
Sbjct: 97 SMPVDEDEQLARALQESM 114
>sp|Q9JIB4|TF2H2_MOUSE General transcription factor IIH subunit 2 OS=Mus musculus
GN=Gtf2h2 PE=1 SV=1
Length = 396
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 12/150 (8%)
Query: 2 VLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRV 61
++ + +D S M + D P+RL + NP + +GI+ K
Sbjct: 57 MMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEK 116
Query: 62 LT-------TPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFA 114
LT T L K + ++ GE ++ + +A LKH R+ +I+F+
Sbjct: 117 LTELSGNPRKHITSLKKAV----DMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFS 172
Query: 115 GSPVKYDRKVMEMIGKKLKKNSVAIDIVNF 144
+ ++I K LK + + ++
Sbjct: 173 SLTTCDPSNIYDLI-KTLKTAKIRVSVIGL 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.125 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,102,336
Number of Sequences: 539616
Number of extensions: 6324152
Number of successful extensions: 28246
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 374
Number of HSP's that attempted gapping in prelim test: 26751
Number of HSP's gapped (non-prelim): 1476
length of query: 405
length of database: 191,569,459
effective HSP length: 120
effective length of query: 285
effective length of database: 126,815,539
effective search space: 36142428615
effective search space used: 36142428615
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)