Query 015543
Match_columns 405
No_of_seqs 221 out of 455
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 07:17:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2884 26S proteasome regulat 100.0 8E-87 1.7E-91 622.6 25.4 240 1-249 1-241 (259)
2 COG5148 RPN10 26S proteasome r 100.0 7.1E-71 1.5E-75 506.8 23.2 234 1-251 1-234 (243)
3 cd01452 VWA_26S_proteasome_sub 100.0 3.7E-56 8.1E-61 412.8 23.5 187 1-188 1-187 (187)
4 PF04056 Ssl1: Ssl1-like; Int 100.0 3.1E-39 6.7E-44 301.0 15.2 169 9-187 1-172 (193)
5 KOG2807 RNA polymerase II tran 100.0 1.3E-31 2.7E-36 263.0 13.7 173 3-185 60-233 (378)
6 cd01453 vWA_transcription_fact 100.0 1.2E-28 2.5E-33 226.5 19.1 172 3-184 3-175 (183)
7 COG5151 SSL1 RNA polymerase II 99.9 4.3E-27 9.4E-32 230.2 13.4 177 3-187 87-266 (421)
8 PRK13685 hypothetical protein; 99.8 7.9E-18 1.7E-22 167.3 19.7 161 5-172 90-273 (326)
9 PF13519 VWA_2: von Willebrand 99.8 6E-17 1.3E-21 140.5 17.9 164 6-184 2-169 (172)
10 cd01467 vWA_BatA_type VWA BatA 99.7 7.8E-16 1.7E-20 137.7 19.5 151 5-163 4-168 (180)
11 cd01465 vWA_subgroup VWA subgr 99.7 1.7E-15 3.6E-20 133.6 19.6 145 5-160 2-151 (170)
12 cd01451 vWA_Magnesium_chelatas 99.7 9.3E-15 2E-19 132.5 19.5 151 6-163 3-158 (178)
13 cd01472 vWA_collagen von Wille 99.6 5.2E-14 1.1E-18 125.0 18.2 154 5-173 2-161 (164)
14 cd01458 vWA_ku Ku70/Ku80 N-ter 99.6 2.8E-14 6.1E-19 133.6 16.3 145 4-148 2-174 (218)
15 cd01456 vWA_ywmD_type VWA ywmD 99.6 4.7E-14 1E-18 130.5 17.5 150 4-163 21-193 (206)
16 cd01466 vWA_C3HC4_type VWA C3H 99.6 2.9E-14 6.3E-19 126.7 14.9 148 6-171 3-154 (155)
17 cd01480 vWA_collagen_alpha_1-V 99.6 6.7E-14 1.4E-18 127.9 17.6 147 5-160 4-161 (186)
18 cd00198 vWFA Von Willebrand fa 99.6 1.4E-13 2.9E-18 116.2 17.6 150 5-162 2-155 (161)
19 TIGR03436 acidobact_VWFA VWFA- 99.6 2E-13 4.4E-18 132.8 19.3 156 5-172 55-238 (296)
20 smart00327 VWA von Willebrand 99.6 2.2E-13 4.8E-18 118.7 17.4 150 5-163 3-159 (177)
21 cd01471 vWA_micronemal_protein 99.5 2.9E-13 6.3E-18 122.6 17.3 170 6-184 3-182 (186)
22 cd01450 vWFA_subfamily_ECM Von 99.5 4.3E-13 9.4E-18 115.7 16.3 147 6-162 3-155 (161)
23 cd01463 vWA_VGCC_like VWA Volt 99.5 6E-13 1.3E-17 121.6 17.5 148 5-163 15-180 (190)
24 cd01469 vWA_integrins_alpha_su 99.5 1E-12 2.3E-17 119.3 18.5 161 6-176 3-171 (177)
25 cd01461 vWA_interalpha_trypsin 99.5 9.4E-13 2E-17 115.9 17.6 155 4-176 3-162 (171)
26 cd01470 vWA_complement_factors 99.5 7E-13 1.5E-17 121.8 17.2 160 5-175 2-189 (198)
27 cd01482 vWA_collagen_alphaI-XI 99.5 1.4E-12 3E-17 116.5 18.3 155 5-174 2-162 (164)
28 PRK13406 bchD magnesium chelat 99.5 1.1E-12 2.4E-17 140.6 19.6 167 4-184 402-579 (584)
29 cd01474 vWA_ATR ATR (Anthrax T 99.5 2.8E-12 6.1E-17 116.8 17.9 154 5-175 6-165 (185)
30 cd01477 vWA_F09G8-8_type VWA F 99.5 3.1E-12 6.8E-17 119.2 18.0 148 5-160 21-183 (193)
31 cd01460 vWA_midasin VWA_Midasi 99.4 3.2E-12 7E-17 125.2 16.7 170 5-185 62-257 (266)
32 cd01473 vWA_CTRP CTRP for CS 99.4 6.5E-12 1.4E-16 116.5 15.5 147 6-160 3-160 (192)
33 cd01476 VWA_integrin_invertebr 99.4 2.5E-11 5.4E-16 107.2 18.3 144 6-158 3-153 (163)
34 TIGR00868 hCaCC calcium-activa 99.4 1.5E-11 3.3E-16 136.2 18.3 144 5-163 306-454 (863)
35 cd01462 VWA_YIEM_type VWA YIEM 99.4 4.7E-11 1E-15 104.6 17.6 135 5-148 2-136 (152)
36 cd01464 vWA_subfamily VWA subf 99.4 2.2E-11 4.7E-16 110.0 15.8 147 3-160 3-159 (176)
37 cd01454 vWA_norD_type norD typ 99.4 4.3E-11 9.3E-16 107.7 17.7 147 5-159 2-166 (174)
38 TIGR02031 BchD-ChlD magnesium 99.4 3.5E-11 7.5E-16 129.2 19.2 151 5-163 409-574 (589)
39 PF00092 VWA: von Willebrand f 99.4 4.3E-11 9.3E-16 105.1 16.4 166 6-183 2-174 (178)
40 cd01475 vWA_Matrilin VWA_Matri 99.3 6.2E-11 1.3E-15 111.5 18.4 157 5-176 4-169 (224)
41 TIGR02442 Cob-chelat-sub cobal 99.3 1.2E-10 2.6E-15 125.9 20.1 152 5-163 467-626 (633)
42 cd01455 vWA_F11C1-5a_type Von 99.3 1.2E-10 2.7E-15 109.2 14.3 166 6-187 3-188 (191)
43 PF13768 VWA_3: von Willebrand 99.2 2.5E-10 5.4E-15 100.3 14.3 143 5-163 2-150 (155)
44 cd01481 vWA_collagen_alpha3-VI 99.2 1.4E-09 3E-14 98.6 18.4 153 5-174 2-163 (165)
45 cd01457 vWA_ORF176_type VWA OR 99.2 6.4E-10 1.4E-14 102.7 15.8 153 4-162 3-166 (199)
46 PTZ00441 sporozoite surface pr 99.2 8.7E-10 1.9E-14 117.5 18.7 147 5-159 44-199 (576)
47 COG1240 ChlD Mg-chelatase subu 99.1 3.5E-09 7.6E-14 103.1 16.6 151 5-162 80-237 (261)
48 TIGR03788 marine_srt_targ mari 99.0 7.4E-09 1.6E-13 111.0 18.0 143 5-161 273-420 (596)
49 TIGR00627 tfb4 transcription f 98.8 1.6E-07 3.4E-12 93.0 17.5 175 5-186 4-219 (279)
50 PF03731 Ku_N: Ku70/Ku80 N-ter 98.6 6.2E-07 1.3E-11 84.0 14.3 140 5-144 1-172 (224)
51 PRK10997 yieM hypothetical pro 98.4 6.2E-06 1.4E-10 87.3 16.3 151 5-176 325-476 (487)
52 TIGR00578 ku70 ATP-dependent D 98.4 7.9E-06 1.7E-10 88.2 16.3 143 3-145 10-182 (584)
53 cd01479 Sec24-like Sec24-like: 98.3 1.3E-05 2.9E-10 77.3 13.6 149 5-164 5-213 (244)
54 cd01468 trunk_domain trunk dom 98.3 3.7E-05 8E-10 73.5 16.2 150 5-164 5-216 (239)
55 PF10138 vWA-TerF-like: vWA fo 98.3 4.2E-05 9E-10 72.7 15.8 171 5-185 3-184 (200)
56 cd01478 Sec23-like Sec23-like: 98.2 3.6E-05 7.8E-10 75.6 13.7 146 5-163 5-247 (267)
57 PF03850 Tfb4: Transcription f 98.1 0.0002 4.3E-09 71.0 17.7 172 5-184 3-215 (276)
58 PF04811 Sec23_trunk: Sec23/Se 98.0 7.6E-05 1.6E-09 71.3 12.9 149 5-163 5-217 (243)
59 COG4245 TerY Uncharacterized p 97.9 0.00023 4.9E-09 67.2 13.5 144 5-163 5-163 (207)
60 PLN00162 transport protein sec 97.7 0.00048 1.1E-08 76.7 13.7 147 5-164 126-369 (761)
61 PF05762 VWA_CoxE: VWA domain 97.5 0.0019 4.1E-08 61.5 13.2 124 5-143 59-186 (222)
62 KOG2487 RNA polymerase II tran 97.5 0.0012 2.6E-08 65.4 11.6 169 5-186 25-237 (314)
63 COG2425 Uncharacterized protei 97.5 0.0024 5.2E-08 67.1 14.5 132 6-148 275-408 (437)
64 PF11265 Med25_VWA: Mediator c 97.3 0.026 5.7E-07 54.8 17.7 157 3-166 13-202 (226)
65 COG2304 Uncharacterized protei 96.8 0.017 3.6E-07 57.8 12.8 148 3-161 37-190 (399)
66 PTZ00395 Sec24-related protein 96.8 0.0092 2E-07 69.5 11.5 134 5-147 954-1155(1560)
67 smart00187 INB Integrin beta s 96.5 0.15 3.3E-06 53.6 17.6 159 5-176 101-323 (423)
68 COG4867 Uncharacterized protei 96.0 0.092 2E-06 55.4 12.4 141 3-163 463-623 (652)
69 cd01459 vWA_copine_like VWA Co 95.7 0.58 1.3E-05 46.1 16.2 147 5-158 33-204 (254)
70 COG5242 TFB4 RNA polymerase II 95.7 0.2 4.4E-06 48.9 12.5 147 30-187 47-225 (296)
71 PF02809 UIM: Ubiquitin intera 95.0 0.0075 1.6E-07 36.5 0.2 16 324-339 2-17 (18)
72 KOG1984 Vesicle coat complex C 94.6 0.25 5.5E-06 55.8 10.8 170 5-185 419-652 (1007)
73 PF06707 DUF1194: Protein of u 94.3 1.3 2.8E-05 42.6 13.6 170 5-184 5-194 (205)
74 smart00726 UIM Ubiquitin-inter 94.3 0.03 6.5E-07 36.9 1.8 20 222-241 1-20 (26)
75 PF02809 UIM: Ubiquitin intera 94.0 0.03 6.4E-07 33.9 1.3 16 222-237 2-17 (18)
76 KOG2326 DNA-binding subunit of 93.8 1.2 2.5E-05 48.9 13.6 145 1-146 2-166 (669)
77 KOG1986 Vesicle coat complex C 93.7 1.1 2.3E-05 49.9 13.3 144 6-162 124-354 (745)
78 COG1721 Uncharacterized conser 91.8 3.1 6.7E-05 43.3 13.3 168 5-184 226-408 (416)
79 PF07002 Copine: Copine; Inte 91.7 3 6.6E-05 37.8 11.5 120 22-145 9-146 (146)
80 smart00726 UIM Ubiquitin-inter 91.7 0.078 1.7E-06 34.9 0.9 19 324-342 1-19 (26)
81 KOG2353 L-type voltage-depende 90.9 2.7 5.8E-05 49.4 12.7 140 5-156 227-382 (1104)
82 TIGR01651 CobT cobaltochelatas 89.9 3.9 8.5E-05 45.0 12.2 59 88-148 499-569 (600)
83 PF11775 CobT_C: Cobalamin bio 88.8 13 0.00027 36.3 13.5 136 5-148 14-189 (219)
84 PF10221 DUF2151: Cell cycle a 87.5 5.6 0.00012 44.7 11.6 120 6-125 8-171 (695)
85 PF11443 DUF2828: Domain of un 87.4 13 0.00029 40.6 14.1 134 3-145 340-483 (534)
86 COG5028 Vesicle coat complex C 84.9 14 0.00029 42.1 12.8 146 5-162 278-477 (861)
87 PF09967 DUF2201: VWA-like dom 84.4 2 4.4E-05 37.6 5.2 92 6-118 1-94 (126)
88 PF03853 YjeF_N: YjeF-related 80.4 8.4 0.00018 35.2 7.9 57 89-148 8-64 (169)
89 cd03819 GT1_WavL_like This fam 80.0 34 0.00074 32.7 12.3 43 106-148 183-228 (355)
90 cd04922 ACT_AKi-HSDH-ThrA_2 AC 76.8 7.3 0.00016 28.9 5.3 37 110-146 3-39 (66)
91 KOG2327 DNA-binding subunit of 76.8 39 0.00084 37.4 12.6 142 3-146 18-184 (602)
92 cd03811 GT1_WabH_like This fam 76.8 29 0.00062 32.0 10.4 55 106-164 187-244 (353)
93 PF00362 Integrin_beta: Integr 76.7 9.2 0.0002 40.5 7.8 160 5-177 104-327 (426)
94 cd03799 GT1_amsK_like This is 74.3 9 0.00019 36.5 6.5 55 106-164 177-234 (355)
95 COG0062 Uncharacterized conser 74.2 25 0.00054 33.8 9.4 58 89-149 32-89 (203)
96 cd03794 GT1_wbuB_like This fam 74.1 56 0.0012 30.6 11.7 51 106-160 218-270 (394)
97 cd05844 GT1_like_7 Glycosyltra 73.9 33 0.00072 33.1 10.4 54 106-163 186-242 (367)
98 cd03820 GT1_amsD_like This fam 73.2 40 0.00087 31.1 10.4 55 105-163 175-232 (348)
99 PLN03049 pyridoxine (pyridoxam 72.8 30 0.00066 37.0 10.6 56 90-148 43-98 (462)
100 COG4548 NorD Nitric oxide redu 72.3 25 0.00055 38.7 9.7 136 5-148 448-602 (637)
101 KOG1985 Vesicle coat complex C 70.6 79 0.0017 36.5 13.4 144 5-160 296-499 (887)
102 cd04924 ACT_AK-Arch_2 ACT doma 70.2 13 0.00028 27.4 5.3 37 110-146 3-39 (66)
103 cd03813 GT1_like_3 This family 69.4 9.6 0.00021 39.9 5.9 60 105-164 290-352 (475)
104 cd04919 ACT_AK-Hom3_2 ACT doma 68.8 14 0.00031 27.5 5.3 37 110-146 3-39 (66)
105 cd03795 GT1_like_4 This family 68.0 59 0.0013 31.0 10.6 52 106-163 189-241 (357)
106 PF03358 FMN_red: NADPH-depend 67.7 11 0.00025 32.7 5.2 40 108-147 1-42 (152)
107 cd03817 GT1_UGDG_like This fam 67.0 66 0.0014 30.1 10.6 57 106-166 200-259 (374)
108 PF12257 DUF3608: Protein of u 66.4 18 0.00038 36.6 6.8 64 84-147 202-271 (281)
109 COG1432 Uncharacterized conser 66.1 27 0.00059 32.5 7.6 58 80-148 89-146 (181)
110 cd04916 ACT_AKiii-YclM-BS_2 AC 65.7 18 0.00039 26.7 5.3 37 110-146 3-39 (66)
111 cd03809 GT1_mtfB_like This fam 65.5 58 0.0012 30.8 9.9 43 106-148 193-238 (365)
112 KOG1327 Copine [Signal transdu 64.3 1.6E+02 0.0035 32.4 13.9 148 6-160 288-463 (529)
113 PF00731 AIRC: AIR carboxylase 62.9 39 0.00085 31.1 7.8 63 109-176 2-64 (150)
114 cd04962 GT1_like_5 This family 62.2 1.5E+02 0.0033 28.5 12.6 76 107-189 196-273 (371)
115 PF00534 Glycos_transf_1: Glyc 61.9 35 0.00075 29.6 7.1 133 104-243 11-164 (172)
116 cd03823 GT1_ExpE7_like This fa 61.8 1.2E+02 0.0027 28.3 11.3 43 106-148 189-232 (359)
117 PRK15427 colanic acid biosynth 61.4 14 0.0003 38.0 5.2 53 108-164 222-277 (406)
118 cd04868 ACT_AK-like ACT domain 61.0 26 0.00057 24.3 5.2 37 110-146 2-38 (60)
119 cd03821 GT1_Bme6_like This fam 60.9 40 0.00086 31.5 7.8 57 105-163 200-259 (375)
120 KOG2941 Beta-1,4-mannosyltrans 60.5 30 0.00065 36.5 7.3 64 103-176 8-71 (444)
121 cd03801 GT1_YqgM_like This fam 60.4 45 0.00097 30.7 8.0 58 105-166 196-256 (374)
122 cd04918 ACT_AK1-AT_2 ACT domai 56.8 29 0.00063 26.4 5.1 38 110-148 3-40 (65)
123 cd01840 SGNH_hydrolase_yrhL_li 56.3 1.1E+02 0.0025 26.6 9.5 57 85-145 32-88 (150)
124 cd03807 GT1_WbnK_like This fam 56.0 1.6E+02 0.0034 27.4 10.9 42 107-148 192-236 (365)
125 PLN02918 pyridoxine (pyridoxam 55.9 1.3E+02 0.0028 33.2 11.6 54 90-146 119-172 (544)
126 PF01936 NYN: NYN domain; Int 55.2 38 0.00083 28.8 6.1 49 85-144 79-127 (146)
127 TIGR00197 yjeF_nterm yjeF N-te 54.5 41 0.0009 31.8 6.8 52 90-146 31-82 (205)
128 PF02441 Flavoprotein: Flavopr 54.4 18 0.00039 31.3 4.0 34 108-143 1-34 (129)
129 PLN03050 pyridoxine (pyridoxam 53.6 40 0.00088 33.0 6.7 35 107-143 60-94 (246)
130 TIGR03088 stp2 sugar transfera 53.0 2E+02 0.0044 28.2 11.7 53 107-163 193-252 (374)
131 PRK10565 putative carbohydrate 52.8 1.7E+02 0.0037 31.6 11.9 40 107-148 60-99 (508)
132 TIGR02690 resist_ArsH arsenica 52.3 32 0.00069 33.3 5.7 71 103-175 22-99 (219)
133 cd03814 GT1_like_2 This family 51.5 2.1E+02 0.0046 26.8 12.0 41 108-148 197-239 (364)
134 cd04951 GT1_WbdM_like This fam 51.4 54 0.0012 31.2 7.2 54 106-163 186-242 (360)
135 cd03798 GT1_wlbH_like This fam 51.3 56 0.0012 30.3 7.0 53 106-162 200-255 (377)
136 KOG2935 Ataxin 3/Josephin [Gen 50.8 13 0.00028 37.2 2.7 36 291-340 216-251 (315)
137 PLN02948 phosphoribosylaminoim 50.8 1.7E+02 0.0037 32.2 11.6 67 105-176 408-474 (577)
138 PRK15045 cellulose biosynthesi 50.5 1.6E+02 0.0035 32.3 11.0 127 29-163 32-165 (519)
139 cd04921 ACT_AKi-HSDH-ThrA-like 50.3 47 0.001 25.7 5.5 37 110-146 3-39 (80)
140 PF00448 SRP54: SRP54-type pro 50.1 51 0.0011 30.9 6.6 55 109-163 2-56 (196)
141 cd04923 ACT_AK-LysC-DapG-like_ 49.7 45 0.00097 24.1 5.0 34 111-144 3-36 (63)
142 cd04892 ACT_AK-like_2 ACT doma 48.4 49 0.0011 23.5 5.0 37 110-146 2-38 (65)
143 KOG3768 DEAD box RNA helicase 47.9 95 0.0021 34.9 8.9 95 5-99 3-101 (888)
144 TIGR00288 conserved hypothetic 47.9 2.4E+02 0.0051 26.3 11.6 119 33-175 9-157 (160)
145 cd04949 GT1_gtfA_like This fam 47.6 2.1E+02 0.0046 27.9 10.8 53 107-163 203-258 (372)
146 cd04936 ACT_AKii-LysC-BS-like_ 47.2 52 0.0011 23.7 5.0 34 111-144 3-36 (63)
147 cd06167 LabA_like LabA_like pr 46.5 59 0.0013 28.1 6.1 78 68-159 53-143 (149)
148 cd04915 ACT_AK-Ectoine_2 ACT d 46.5 55 0.0012 25.2 5.2 39 109-148 3-41 (66)
149 cd03812 GT1_CapH_like This fam 45.7 90 0.0019 29.9 7.7 55 105-163 189-246 (358)
150 PF01882 DUF58: Protein of unk 43.8 51 0.0011 26.1 4.8 41 4-44 41-81 (86)
151 cd03796 GT1_PIG-A_like This fa 43.5 96 0.0021 31.2 7.8 55 106-164 191-248 (398)
152 COG5148 RPN10 26S proteasome r 43.1 24 0.00051 34.2 3.1 29 354-382 172-215 (243)
153 PF10293 DUF2405: Domain of un 42.2 40 0.00086 31.0 4.4 28 220-247 112-142 (157)
154 COG3660 Predicted nucleoside-d 42.0 2.9E+02 0.0063 28.4 10.6 77 80-161 133-218 (329)
155 KOG2228 Origin recognition com 41.4 1.8E+02 0.0038 30.9 9.3 151 27-184 30-212 (408)
156 cd03822 GT1_ecORF704_like This 41.1 3.1E+02 0.0068 25.8 12.2 41 106-146 183-226 (366)
157 TIGR03567 FMN_reduc_SsuE FMN r 40.6 1.4E+02 0.0031 26.9 7.8 38 109-146 1-40 (171)
158 PF00763 THF_DHG_CYH: Tetrahyd 39.2 1.6E+02 0.0035 25.4 7.6 75 94-173 19-93 (117)
159 cd03364 TOPRIM_DnaG_primases T 38.7 53 0.0012 25.9 4.1 37 107-144 43-79 (79)
160 PF13477 Glyco_trans_4_2: Glyc 37.9 68 0.0015 26.9 4.9 35 110-148 2-36 (139)
161 PLN02726 dolichyl-phosphate be 37.9 1.8E+02 0.0039 27.1 8.3 32 108-139 94-125 (243)
162 PF12646 DUF3783: Domain of un 37.9 85 0.0018 24.0 5.0 49 109-162 2-50 (58)
163 PRK06756 flavodoxin; Provision 37.6 52 0.0011 28.8 4.3 39 108-146 2-40 (148)
164 PLN02235 ATP citrate (pro-S)-l 37.5 2.7E+02 0.0059 29.8 10.2 137 39-184 262-412 (423)
165 cd03792 GT1_Trehalose_phosphor 37.4 2.3E+02 0.005 28.0 9.3 68 106-173 188-259 (372)
166 cd05009 SIS_GlmS_GlmD_2 SIS (S 37.2 95 0.002 26.6 5.8 24 120-143 73-96 (153)
167 PF04285 DUF444: Protein of un 36.7 3.6E+02 0.0078 28.9 10.9 121 4-146 246-374 (421)
168 PF00483 NTP_transferase: Nucl 36.3 98 0.0021 28.7 6.2 108 50-175 2-111 (248)
169 COG4907 Predicted membrane pro 36.2 17 0.00037 39.2 1.2 34 139-176 517-552 (595)
170 cd03808 GT1_cap1E_like This fa 36.2 2E+02 0.0043 26.6 8.2 43 106-148 186-231 (359)
171 PF13911 AhpC-TSA_2: AhpC/TSA 35.4 84 0.0018 26.2 5.1 51 125-184 2-52 (115)
172 PRK10569 NAD(P)H-dependent FMN 35.2 75 0.0016 29.7 5.2 66 108-175 1-75 (191)
173 TIGR01162 purE phosphoribosyla 35.0 2.1E+02 0.0046 26.6 8.0 13 222-234 128-140 (156)
174 TIGR02095 glgA glycogen/starch 34.6 1.9E+02 0.0042 30.0 8.6 53 107-161 290-343 (473)
175 cd03805 GT1_ALG2_like This fam 34.0 1.6E+02 0.0035 28.9 7.6 56 106-161 209-274 (392)
176 PRK14179 bifunctional 5,10-met 33.9 4.7E+02 0.01 26.5 10.9 74 109-184 34-109 (284)
177 PRK05569 flavodoxin; Provision 33.7 74 0.0016 27.4 4.6 39 109-147 3-41 (141)
178 COG1393 ArsC Arsenate reductas 33.6 1.4E+02 0.0031 26.0 6.3 49 111-163 3-51 (117)
179 PRK03692 putative UDP-N-acetyl 33.4 1.6E+02 0.0035 28.9 7.4 79 88-176 88-166 (243)
180 PRK08105 flavodoxin; Provision 33.4 49 0.0011 29.6 3.5 38 109-146 3-40 (149)
181 PRK10307 putative glycosyl tra 32.9 1.4E+02 0.0031 30.0 7.1 53 108-164 229-283 (412)
182 TIGR03449 mycothiol_MshA UDP-N 32.3 5.1E+02 0.011 25.7 11.4 58 107-164 218-281 (405)
183 PRK14177 bifunctional 5,10-met 32.3 4.4E+02 0.0096 26.7 10.4 92 90-185 18-111 (284)
184 smart00275 G_alpha G protein a 32.2 5.7E+02 0.012 26.1 12.2 51 4-58 209-261 (342)
185 cd05017 SIS_PGI_PMI_1 The memb 32.0 2.8E+02 0.0061 23.3 7.8 56 107-176 44-99 (119)
186 cd04912 ACT_AKiii-LysC-EC-like 31.7 1.3E+02 0.0028 23.5 5.3 36 110-145 3-38 (75)
187 cd07041 STAS_RsbR_RsbS_like Su 31.4 1.2E+02 0.0027 24.7 5.4 67 80-148 15-85 (109)
188 PRK06703 flavodoxin; Provision 31.4 70 0.0015 28.0 4.1 39 109-147 3-41 (151)
189 PF02780 Transketolase_C: Tran 31.3 82 0.0018 26.8 4.4 53 107-162 9-61 (124)
190 PRK05568 flavodoxin; Provision 31.3 91 0.002 26.8 4.8 40 109-148 3-42 (142)
191 PRK15484 lipopolysaccharide 1, 31.1 2.2E+02 0.0048 28.8 8.2 41 107-147 192-235 (380)
192 cd04908 ACT_Bt0572_1 N-termina 31.1 1.1E+02 0.0023 23.2 4.6 32 108-143 2-33 (66)
193 KOG1549 Cysteine desulfurase N 30.9 5.9E+02 0.013 27.5 11.4 67 89-160 113-179 (428)
194 TIGR02918 accessory Sec system 30.8 1.4E+02 0.003 32.1 6.9 51 109-163 320-373 (500)
195 PRK12553 ATP-dependent Clp pro 30.6 2.2E+02 0.0048 27.0 7.6 79 68-148 27-105 (207)
196 PF04244 DPRP: Deoxyribodipyri 30.5 17 0.00037 35.2 0.1 72 103-186 37-111 (224)
197 PF13768 VWA_3: von Willebrand 30.5 1.4E+02 0.0031 25.7 5.9 13 135-147 33-45 (155)
198 PRK04155 chaperone protein Hch 30.5 2.2E+02 0.0047 28.7 7.8 26 121-146 75-100 (287)
199 COG1553 DsrE Uncharacterized c 30.1 1.8E+02 0.0039 26.2 6.4 60 81-143 11-79 (126)
200 PF05762 VWA_CoxE: VWA domain 29.8 1.7E+02 0.0037 27.8 6.8 70 80-149 23-101 (222)
201 PF13362 Toprim_3: Toprim doma 29.5 1.5E+02 0.0032 24.0 5.5 42 105-146 39-81 (96)
202 PF09875 DUF2102: Uncharacteri 29.4 1.3E+02 0.0029 26.2 5.2 64 112-176 2-65 (104)
203 PRK07765 para-aminobenzoate sy 29.3 63 0.0014 30.7 3.7 38 111-148 50-88 (214)
204 PF00117 GATase: Glutamine ami 29.3 58 0.0013 29.5 3.3 47 110-161 45-92 (192)
205 cd04905 ACT_CM-PDT C-terminal 29.1 1.1E+02 0.0023 24.0 4.4 45 99-143 33-77 (80)
206 cd06844 STAS Sulphate Transpor 28.8 1.2E+02 0.0026 24.6 4.9 67 80-148 13-83 (100)
207 PRK00411 cdc6 cell division co 28.7 3.7E+02 0.008 27.1 9.3 91 85-184 120-216 (394)
208 PLN02683 pyruvate dehydrogenas 28.5 1.7E+02 0.0037 30.2 6.9 48 124-176 242-289 (356)
209 PRK09271 flavodoxin; Provision 28.5 99 0.0021 27.7 4.6 39 108-146 1-39 (160)
210 PRK14169 bifunctional 5,10-met 28.3 5.3E+02 0.012 26.1 10.1 90 91-185 17-108 (282)
211 TIGR02877 spore_yhbH sporulati 28.3 5.2E+02 0.011 27.4 10.3 138 4-163 202-348 (371)
212 PRK09004 FMN-binding protein M 28.1 75 0.0016 28.4 3.7 36 109-144 3-38 (146)
213 KOG3572 Uncharacterized conser 28.0 1.1E+02 0.0024 37.1 5.9 64 84-147 428-497 (1701)
214 cd04946 GT1_AmsK_like This fam 27.9 6.6E+02 0.014 25.6 11.1 50 109-160 231-283 (407)
215 cd03791 GT1_Glycogen_synthase_ 27.8 3.1E+02 0.0067 28.2 8.7 54 106-161 294-348 (476)
216 KOG2199 Signal transducing ada 27.7 24 0.00052 37.5 0.5 19 324-342 164-182 (462)
217 TIGR02886 spore_II_AA anti-sig 27.7 1.8E+02 0.004 23.6 5.8 67 80-148 13-83 (106)
218 PRK00973 glucose-6-phosphate i 27.5 5.7E+02 0.012 27.5 10.7 158 7-175 2-175 (446)
219 cd00001 PTS_IIB_man PTS_IIB, P 27.4 1.2E+02 0.0026 27.6 5.0 65 72-147 40-105 (151)
220 PRK13981 NAD synthetase; Provi 27.4 8.1E+02 0.017 26.4 12.1 92 19-146 251-345 (540)
221 PRK05325 hypothetical protein; 27.3 4.8E+02 0.01 27.8 10.0 138 4-164 222-370 (401)
222 PRK14512 ATP-dependent Clp pro 27.1 2.9E+02 0.0063 26.1 7.7 68 79-148 26-93 (197)
223 TIGR00493 clpP ATP-dependent C 26.9 3.3E+02 0.0071 25.5 8.0 69 78-148 28-96 (191)
224 cd04937 ACT_AKi-DapG-BS_2 ACT 26.9 1.6E+02 0.0034 22.1 4.9 34 110-143 3-36 (64)
225 cd00859 HisRS_anticodon HisRS 26.9 1.7E+02 0.0036 22.2 5.1 25 121-145 13-37 (91)
226 PRK14188 bifunctional 5,10-met 26.8 6.1E+02 0.013 25.7 10.3 91 91-185 18-110 (296)
227 PF07739 TipAS: TipAS antibiot 26.8 45 0.00097 27.8 2.0 17 369-385 51-67 (118)
228 PRK14175 bifunctional 5,10-met 26.7 5.2E+02 0.011 26.2 9.8 92 89-185 17-110 (286)
229 PRK05749 3-deoxy-D-manno-octul 26.5 6.2E+02 0.013 25.7 10.6 53 108-162 233-285 (425)
230 KOG4465 Uncharacterized conser 26.5 2E+02 0.0044 30.6 6.9 115 6-134 430-547 (598)
231 TIGR00750 lao LAO/AO transport 26.4 2.4E+02 0.0052 28.0 7.4 52 95-147 21-73 (300)
232 TIGR03599 YloV DAK2 domain fus 26.4 3.6E+02 0.0077 29.6 9.2 51 127-181 325-375 (530)
233 cd01822 Lysophospholipase_L1_l 26.4 3.2E+02 0.007 23.6 7.5 52 111-162 3-60 (177)
234 PRK03767 NAD(P)H:quinone oxido 26.2 1.1E+02 0.0023 28.5 4.5 40 109-148 3-43 (200)
235 cd04955 GT1_like_6 This family 26.2 2.5E+02 0.0053 26.8 7.2 40 108-148 193-233 (363)
236 cd07017 S14_ClpP_2 Caseinolyti 25.9 3.2E+02 0.0069 24.8 7.6 68 79-148 12-79 (171)
237 PRK14194 bifunctional 5,10-met 25.5 6.8E+02 0.015 25.6 10.4 94 88-186 17-112 (301)
238 cd06543 GH18_PF-ChiA-like PF-C 25.4 2.2E+02 0.0048 28.7 6.9 91 50-144 70-176 (294)
239 PRK14168 bifunctional 5,10-met 25.3 6.9E+02 0.015 25.5 10.4 77 109-187 35-113 (297)
240 TIGR01753 flav_short flavodoxi 25.3 97 0.0021 26.1 3.8 37 110-146 1-37 (140)
241 PRK11892 pyruvate dehydrogenas 25.1 2E+02 0.0044 30.9 6.9 48 124-176 354-401 (464)
242 PRK00170 azoreductase; Reviewe 25.0 1.4E+02 0.0031 27.1 5.1 40 108-147 2-46 (201)
243 COG1105 FruK Fructose-1-phosph 24.9 55 0.0012 33.5 2.5 106 50-177 131-244 (310)
244 KOG0257 Kynurenine aminotransf 24.9 1.4E+02 0.003 31.9 5.5 40 111-160 175-219 (420)
245 COG3552 CoxE Protein containin 24.8 4.4E+02 0.0096 28.0 9.0 112 6-134 221-339 (395)
246 COG0166 Pgi Glucose-6-phosphat 24.6 4.7E+02 0.01 28.2 9.5 86 88-179 91-179 (446)
247 PF02635 DrsE: DsrE/DsrF-like 24.6 2.4E+02 0.0053 22.8 6.0 27 122-148 17-46 (122)
248 PF07745 Glyco_hydro_53: Glyco 24.6 2.3E+02 0.0049 29.3 6.9 62 82-148 52-135 (332)
249 PF10740 DUF2529: Protein of u 24.6 1.2E+02 0.0025 28.8 4.4 35 106-143 81-115 (172)
250 PF03808 Glyco_tran_WecB: Glyc 24.4 4.9E+02 0.011 23.7 8.5 59 111-174 51-109 (172)
251 CHL00144 odpB pyruvate dehydro 24.3 2.7E+02 0.0058 28.4 7.3 49 123-176 214-262 (327)
252 COG2718 Uncharacterized conser 24.2 8.3E+02 0.018 26.2 10.9 107 4-129 246-360 (423)
253 cd04913 ACT_AKii-LysC-BS-like_ 24.2 1.9E+02 0.004 21.2 4.8 34 111-146 4-37 (75)
254 TIGR00725 conserved hypothetic 23.9 2.9E+02 0.0062 25.2 6.8 60 109-176 3-64 (159)
255 cd06533 Glyco_transf_WecG_TagA 23.9 4.4E+02 0.0096 24.0 8.1 80 88-176 29-108 (171)
256 COG1763 MobB Molybdopterin-gua 23.9 1.3E+02 0.0029 27.8 4.6 39 108-146 2-40 (161)
257 PRK14489 putative bifunctional 23.8 1.3E+02 0.0028 30.9 5.1 13 151-163 218-230 (366)
258 COG2454 Uncharacterized conser 23.8 2.4E+02 0.0053 27.5 6.5 60 85-148 110-169 (211)
259 COG4547 CobT Cobalamin biosynt 23.8 3.2E+02 0.0069 30.1 7.9 132 5-145 415-585 (620)
260 PF13684 Dak1_2: Dihydroxyacet 23.7 5.9E+02 0.013 25.8 9.6 50 127-180 107-156 (313)
261 cd04891 ACT_AK-LysC-DapG-like_ 23.6 2.3E+02 0.0049 19.7 5.0 28 120-147 10-37 (61)
262 PF00342 PGI: Phosphoglucose i 23.6 57 0.0012 35.2 2.5 86 89-180 109-200 (486)
263 PF07905 PucR: Purine cataboli 23.6 4.7E+02 0.01 22.4 8.8 74 106-184 41-115 (123)
264 PRK14190 bifunctional 5,10-met 23.4 6.7E+02 0.015 25.4 9.9 90 91-185 19-110 (284)
265 cd03413 CbiK_C Anaerobic cobal 23.4 3.9E+02 0.0085 22.6 7.1 58 111-174 3-63 (103)
266 PF13662 Toprim_4: Toprim doma 23.3 50 0.0011 26.2 1.5 36 107-143 46-81 (81)
267 KOG2648 Diphthamide biosynthes 23.3 1.7E+02 0.0037 31.6 5.8 98 84-191 245-343 (453)
268 cd03800 GT1_Sucrose_synthase T 23.2 3.4E+02 0.0074 26.3 7.7 57 107-163 219-280 (398)
269 PLN02871 UDP-sulfoquinovose:DA 23.2 1.5E+02 0.0033 30.7 5.5 42 105-146 56-101 (465)
270 KOG2585 Uncharacterized conser 23.1 3.9E+02 0.0085 28.9 8.4 54 108-164 266-319 (453)
271 PRK14172 bifunctional 5,10-met 23.1 7.6E+02 0.016 25.0 10.1 75 108-185 34-110 (278)
272 PF01380 SIS: SIS domain SIS d 23.0 3.5E+02 0.0076 22.2 6.8 55 108-178 55-109 (131)
273 cd04795 SIS SIS domain. SIS (S 23.0 1.9E+02 0.0042 22.1 4.8 34 107-143 48-81 (87)
274 PRK09065 glutamine amidotransf 22.8 94 0.002 30.0 3.6 43 111-158 58-105 (237)
275 PRK14184 bifunctional 5,10-met 22.8 8.1E+02 0.018 24.8 10.5 92 90-185 16-109 (286)
276 PRK00923 sirohydrochlorin coba 22.8 3.8E+02 0.0082 22.8 7.0 54 115-174 10-67 (126)
277 cd04935 ACT_AKiii-DAPDC_1 ACT 22.6 2.5E+02 0.0054 22.2 5.5 35 111-145 4-38 (75)
278 PRK14170 bifunctional 5,10-met 22.5 7E+02 0.015 25.3 9.8 91 91-186 18-110 (284)
279 cd04880 ACT_AAAH-PDT-like ACT 22.5 1E+02 0.0022 23.7 3.1 46 98-143 30-75 (75)
280 PF00331 Glyco_hydro_10: Glyco 22.5 1.3E+02 0.0028 30.4 4.6 132 12-163 86-230 (320)
281 cd01746 GATase1_CTP_Synthase T 22.3 2.9E+02 0.0063 26.8 6.9 49 110-163 58-106 (235)
282 PRK14166 bifunctional 5,10-met 22.3 7.4E+02 0.016 25.1 9.9 76 109-186 32-109 (282)
283 PF03028 Dynein_heavy: Dynein 22.3 44 0.00094 37.2 1.3 38 111-148 119-156 (707)
284 cd03825 GT1_wcfI_like This fam 22.0 1.5E+02 0.0032 28.3 4.8 40 108-147 1-41 (365)
285 COG5271 MDN1 AAA ATPase contai 22.0 7E+02 0.015 32.8 10.8 143 5-164 4394-4549(4600)
286 PRK14974 cell division protein 22.0 5.3E+02 0.011 26.5 9.0 56 107-162 139-194 (336)
287 PF11713 Peptidase_C80: Peptid 21.9 1.8E+02 0.0039 26.7 5.1 63 86-148 81-146 (157)
288 PF00072 Response_reg: Respons 21.8 2E+02 0.0044 22.6 4.9 65 111-183 46-110 (112)
289 TIGR01370 cysRS possible cyste 21.7 5.7E+02 0.012 26.2 9.1 123 19-174 179-305 (315)
290 KOG1198 Zinc-binding oxidoredu 21.7 3E+02 0.0064 28.4 7.1 65 78-148 123-193 (347)
291 COG2242 CobL Precorrin-6B meth 21.6 2.6E+02 0.0057 26.7 6.2 96 21-146 66-161 (187)
292 COG1609 PurR Transcriptional r 21.5 8.3E+02 0.018 24.5 13.0 120 7-146 140-274 (333)
293 PRK09212 pyruvate dehydrogenas 21.4 3.5E+02 0.0076 27.5 7.5 50 122-176 213-262 (327)
294 PF02568 ThiI: Thiamine biosyn 21.4 5.4E+02 0.012 24.5 8.4 64 106-176 3-73 (197)
295 cd08551 Fe-ADH iron-containing 21.2 3.5E+02 0.0075 27.5 7.5 38 110-148 54-91 (370)
296 PRK09922 UDP-D-galactose:(gluc 21.1 1.9E+02 0.0041 28.7 5.5 54 108-166 180-236 (359)
297 PF14581 SseB_C: SseB protein 21.1 2.2E+02 0.0047 23.8 5.1 79 60-146 8-90 (108)
298 TIGR02540 gpx7 putative glutat 21.0 4E+02 0.0087 23.2 7.0 53 109-161 25-83 (153)
299 cd03415 CbiX_CbiC Archaeal sir 21.0 3.7E+02 0.0079 23.7 6.7 56 115-174 9-65 (125)
300 PRK14193 bifunctional 5,10-met 21.0 8.8E+02 0.019 24.6 10.8 90 91-185 19-110 (284)
301 PRK01355 azoreductase; Reviewe 20.8 4.9E+02 0.011 24.1 7.9 41 108-148 2-48 (199)
302 PRK11145 pflA pyruvate formate 20.7 2.2E+02 0.0047 27.0 5.6 50 110-160 73-122 (246)
303 TIGR02826 RNR_activ_nrdG3 anae 20.7 1.2E+02 0.0026 27.4 3.6 47 110-162 64-110 (147)
304 PTZ00182 3-methyl-2-oxobutanat 20.6 2.9E+02 0.0064 28.5 6.8 49 123-176 246-294 (355)
305 COG3958 Transketolase, C-termi 20.6 2.3E+02 0.005 29.2 5.9 48 123-175 205-252 (312)
306 PRK14174 bifunctional 5,10-met 20.6 8.7E+02 0.019 24.7 10.0 75 109-185 33-109 (295)
307 cd04920 ACT_AKiii-DAPDC_2 ACT 20.6 2.1E+02 0.0046 21.6 4.5 37 110-148 2-38 (63)
308 TIGR02793 nikR nickel-responsi 20.5 1.7E+02 0.0036 26.2 4.4 39 15-54 18-57 (129)
309 PRK10792 bifunctional 5,10-met 20.4 8.3E+02 0.018 24.7 9.8 92 91-186 19-112 (285)
310 PRK14180 bifunctional 5,10-met 20.4 8.7E+02 0.019 24.6 10.0 91 91-185 17-109 (282)
311 cd08179 NADPH_BDH NADPH-depend 20.3 3.1E+02 0.0067 28.1 7.0 38 110-148 55-92 (375)
312 TIGR00377 ant_ant_sig anti-ant 20.2 2.5E+02 0.0053 22.7 5.1 28 121-148 60-87 (108)
313 cd08178 AAD_C C-terminal alcoh 20.2 3E+02 0.0064 28.5 6.8 25 121-146 63-87 (398)
314 PLN02681 proline dehydrogenase 20.2 2.4E+02 0.0051 30.4 6.2 37 113-153 88-124 (455)
315 cd08194 Fe-ADH6 Iron-containin 20.1 3.7E+02 0.008 27.5 7.5 38 110-148 54-91 (375)
316 PF13941 MutL: MutL protein 20.1 2.3E+02 0.0049 30.7 6.1 52 106-158 123-174 (457)
317 KOG1763 Uncharacterized conser 20.1 3.3E+02 0.0071 28.2 6.8 94 62-176 83-180 (343)
318 TIGR03566 FMN_reduc_MsuE FMN r 20.1 1.5E+02 0.0033 26.7 4.2 38 109-146 1-41 (174)
319 PRK00726 murG undecaprenyldiph 20.0 1.5E+02 0.0032 29.1 4.5 38 108-146 2-39 (357)
No 1
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-87 Score=622.63 Aligned_cols=240 Identities=61% Similarity=0.926 Sum_probs=228.0
Q ss_pred CCcceEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccc
Q 015543 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELD 80 (405)
Q Consensus 1 m~lEa~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~ 80 (405)
||||+||||||||+|||||||.||||+||++||+.+|..|+++||||+||||+|++..++||+|||.|.++|+++||.++
T Consensus 1 MvlEatmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLsT~T~d~gkils~lh~i~ 80 (259)
T KOG2884|consen 1 MVLEATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLSTLTSDRGKILSKLHGIQ 80 (259)
T ss_pred CCcceEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeeeeccccchHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015543 81 IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (405)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~ 160 (405)
++|+++|.+||++|+++||||++|+|++|||+|+|||+.+++++|+++||+|||++|.||||.||+.. +|+++|.+|++
T Consensus 81 ~~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e~ekeLv~~akrlkk~~Vaidii~FGE~~-~~~e~l~~fid 159 (259)
T KOG2884|consen 81 PHGKANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEESEKELVKLAKRLKKNKVAIDIINFGEAE-NNTEKLFEFID 159 (259)
T ss_pred cCCcccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchhhHHHHHHHHHHHHhcCeeEEEEEecccc-ccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 78999999999
Q ss_pred HHcC-CCCcEEEEecCCCchhhhhhhcCccccCCCCCCCchhHHHHhhhcCCCCCCccCCCCCCCHHHHHHHHhcHHHHH
Q 015543 161 AVNN-NDSSHLVHVPTGPNALSDVLISSPVFTADGEGGSGFAAAAAAAAAGGVSDFDFGVDPNIDPELALALRVSMEEER 239 (405)
Q Consensus 161 ~vn~-~d~Shlv~vp~g~~lLsD~l~sSpI~~g~~~~~~~~~~~~~~~~~~~~~~~efgvDp~~DPELa~ALr~SlEEe~ 239 (405)
++|+ +++||+|+||||+ +|+|++++|||+.||+ |++ +++.++.|.+|+|||||++|||||||||+||||||
T Consensus 160 a~N~~~~gshlv~Vppg~-~L~d~l~ssPii~ge~--g~a-----~~~~~a~g~~f~fgvdp~~DPELAlALRlSMEEer 231 (259)
T KOG2884|consen 160 ALNGKGDGSHLVSVPPGP-LLSDALLSSPIIQGED--GGA-----AAGLGANGMDFEFGVDPEDDPELALALRLSMEEER 231 (259)
T ss_pred HhcCCCCCceEEEeCCCc-cHHHHhhcCceeccCc--ccc-----cccccccccccccCCCcccCHHHHHHHHhhHHHHH
Confidence 9999 7899999999999 8999999999999987 222 12345556789999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 015543 240 ARQEAAAKRA 249 (405)
Q Consensus 240 ~rq~~~~~~~ 249 (405)
+|||++++++
T Consensus 232 ~rQe~aa~~~ 241 (259)
T KOG2884|consen 232 ARQERAAQKA 241 (259)
T ss_pred HHHHHHhhhc
Confidence 9999776554
No 2
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-71 Score=506.78 Aligned_cols=234 Identities=49% Similarity=0.724 Sum_probs=221.9
Q ss_pred CCcceEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccc
Q 015543 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELD 80 (405)
Q Consensus 1 m~lEa~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~ 80 (405)
||||+|||+||||+||+||||.||||+||+++|..++..||+.||||+||||+.++..++||+|||.++++|+++||.+.
T Consensus 1 mvlEatvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~vlsT~T~~~gkilt~lhd~~ 80 (243)
T COG5148 1 MVLEATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLSTPTKQRGKILTFLHDIR 80 (243)
T ss_pred CCcceEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcchhccchhhhhHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015543 81 IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (405)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~ 160 (405)
++|+.++..+|++|+++||||+||.+++|||+|||||+.+++++|+.+||+||||||+||||.||+.. |.+-|.+|++
T Consensus 81 ~~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~esedeLirlak~lkknnVAidii~fGE~~--n~~~l~efId 158 (243)
T COG5148 81 LHGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQESEDELIRLAKQLKKNNVAIDIIFFGEAA--NMAGLFEFID 158 (243)
T ss_pred ccCcchHHHHHHHHHHHHhcccCCccceEEEEEecCcccccHHHHHHHHHHHHhcCeeEEEEehhhhh--hhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999865 8899999999
Q ss_pred HHcCCCCcEEEEecCCCchhhhhhhcCccccCCCCCCCchhHHHHhhhcCCCCCCccCCCCCCCHHHHHHHHhcHHHHHH
Q 015543 161 AVNNNDSSHLVHVPTGPNALSDVLISSPVFTADGEGGSGFAAAAAAAAAGGVSDFDFGVDPNIDPELALALRVSMEEERA 240 (405)
Q Consensus 161 ~vn~~d~Shlv~vp~g~~lLsD~l~sSpI~~g~~~~~~~~~~~~~~~~~~~~~~~efgvDp~~DPELa~ALr~SlEEe~~ 240 (405)
++|+.+.||++++||+|.+|+++|-+|||-+ | .-|+.+.||||||||+|||||||||+||||||+
T Consensus 159 a~N~~dsshl~~~~P~p~ll~~~~~~spig~--g-------------~~g~~~~~e~gvDp~lDpELA~AlrLSmeEek~ 223 (243)
T COG5148 159 ATNFSDSSHLEVKPPNPELLDRVLPFSPIGQ--G-------------VVGDDLQLEYGVDPNLDPELAEALRLSMEEEKK 223 (243)
T ss_pred hhccccceeeEecCCCHHHHHhhccCCcccc--c-------------cccCccceecCCCCCCCHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999999822 2 123334799999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 015543 241 RQEAAAKRAAD 251 (405)
Q Consensus 241 rq~~~~~~~~~ 251 (405)
||+.++++..+
T Consensus 224 rQe~~~qk~~e 234 (243)
T COG5148 224 RQEVAAQKSSE 234 (243)
T ss_pred HHHHHHHhhhh
Confidence 99998876543
No 3
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=100.00 E-value=3.7e-56 Score=412.83 Aligned_cols=187 Identities=63% Similarity=0.955 Sum_probs=184.2
Q ss_pred CCcceEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccc
Q 015543 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELD 80 (405)
Q Consensus 1 m~lEa~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~ 80 (405)
|+|||||||||+|+||+++||+||||++|+++++.|+.+||++||+++||||+|+|+.+.+++|||+|+++++..|+.++
T Consensus 1 m~~ea~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT~D~~~~~~~L~~i~ 80 (187)
T cd01452 1 MVLEATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLTNDQGKILSKLHDVQ 80 (187)
T ss_pred CCceEEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015543 81 IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (405)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~ 160 (405)
++|+++|++||++|+++||||+++.+++|||+|+||+.+++++++++++++|||+||+|+|||||+.. +|++||++|++
T Consensus 81 ~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~-~~~~~l~~~~~ 159 (187)
T cd01452 81 PKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEID-DNTEKLTAFID 159 (187)
T ss_pred CCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCC-CCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHcCCCCcEEEEecCCCchhhhhhhcCc
Q 015543 161 AVNNNDSSHLVHVPTGPNALSDVLISSP 188 (405)
Q Consensus 161 ~vn~~d~Shlv~vp~g~~lLsD~l~sSp 188 (405)
++|++++||||+||+|+++|||+|++||
T Consensus 160 ~~~~~~~s~~~~~~~~~~~lsd~~~~s~ 187 (187)
T cd01452 160 AVNGKDGSHLVSVPPGENLLSDALLSSP 187 (187)
T ss_pred HhcCCCCceEEEeCCCCchhHHHhhcCC
Confidence 9999999999999999999999999998
No 4
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=100.00 E-value=3.1e-39 Score=301.04 Aligned_cols=169 Identities=21% Similarity=0.323 Sum_probs=154.8
Q ss_pred EEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc---ccCCcc
Q 015543 9 CIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL---DIGGEM 85 (405)
Q Consensus 9 vIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l---~~~G~~ 85 (405)
|||+|+||+++||+||||.+++++++.|+.+||+|||++|||||+|+++.+++++++++++.+|+++|+++ .|.|++
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls~lsgn~~~h~~~L~~~~~~~~~G~~ 80 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLSELSGNPQEHIEALKKLRKLEPSGEP 80 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEeeecCCCHHHHHHHHHHhccCCCCCCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999988766 699999
Q ss_pred cHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCC
Q 015543 86 NIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNN 165 (405)
Q Consensus 86 sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~ 165 (405)
||+|||++|+.+|||+|.+ ..++||+++||..++||+++++++++||+++|+|+||+|++|++ +|+++++.|+
T Consensus 81 SLqN~Le~A~~~L~~~p~~-~srEIlvi~gSl~t~Dp~di~~ti~~l~~~~IrvsvI~laaEv~----I~k~i~~~T~-- 153 (193)
T PF04056_consen 81 SLQNGLEMARSSLKHMPSH-GSREILVIFGSLTTCDPGDIHETIESLKKENIRVSVISLAAEVY----ICKKICKETG-- 153 (193)
T ss_pred hHHHHHHHHHHHHhhCccc-cceEEEEEEeecccCCchhHHHHHHHHHHcCCEEEEEEEhHHHH----HHHHHHHhhC--
Confidence 9999999999999999864 45677777899989999999999999999999999999999996 9999999996
Q ss_pred CCcEEEEecCCCchhhhhhhcC
Q 015543 166 DSSHLVHVPTGPNALSDVLISS 187 (405)
Q Consensus 166 d~Shlv~vp~g~~lLsD~l~sS 187 (405)
|.|.|.+.+. | |.|.|+..
T Consensus 154 -G~y~V~lde~-H-~~~lL~~~ 172 (193)
T PF04056_consen 154 -GTYGVILDED-H-FKELLMEH 172 (193)
T ss_pred -CEEEEecCHH-H-HHHHHHhh
Confidence 4777777665 4 78887665
No 5
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=1.3e-31 Score=263.00 Aligned_cols=173 Identities=19% Similarity=0.273 Sum_probs=154.0
Q ss_pred cceEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccc-c
Q 015543 3 LEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELD-I 81 (405)
Q Consensus 3 lEa~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~-~ 81 (405)
...++|+||.|++|...||+|+||..+.++++.|+.+||+|||++|+|||+++++.+.+++.+|+++..++.+|.++. +
T Consensus 60 iRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~ltgnp~~hI~aL~~~~~~ 139 (378)
T KOG2807|consen 60 IRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTDLTGNPRIHIHALKGLTEC 139 (378)
T ss_pred heeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHHhcCCHHHHHHHHhccccc
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999999985 9
Q ss_pred CCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 015543 82 GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAA 161 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~ 161 (405)
+|+++|+|||++|+..|||.+.+.+ +.|+|+++|..+.||+++++++++||+.||||+|||+.+|+. +|+.++++
T Consensus 140 ~g~fSLqNaLe~a~~~Lk~~p~H~s-REVLii~sslsT~DPgdi~~tI~~lk~~kIRvsvIgLsaEv~----icK~l~ka 214 (378)
T KOG2807|consen 140 SGDFSLQNALELAREVLKHMPGHVS-REVLIIFSSLSTCDPGDIYETIDKLKAYKIRVSVIGLSAEVF----ICKELCKA 214 (378)
T ss_pred CCChHHHHHHHHHHHHhcCCCcccc-eEEEEEEeeecccCcccHHHHHHHHHhhCeEEEEEeechhHH----HHHHHHHh
Confidence 9999999999999999999765333 333344477777899999999999999999999999999995 99999999
Q ss_pred HcCCCCcEEEEecCCCchhhhhhh
Q 015543 162 VNNNDSSHLVHVPTGPNALSDVLI 185 (405)
Q Consensus 162 vn~~d~Shlv~vp~g~~lLsD~l~ 185 (405)
|| |-|.|.+.++ | |.+.+.
T Consensus 215 T~---G~Y~V~lDe~-H-lkeLl~ 233 (378)
T KOG2807|consen 215 TG---GRYSVALDEG-H-LKELLL 233 (378)
T ss_pred hC---CeEEEEeCHH-H-HHHHHH
Confidence 97 3777888777 3 555553
No 6
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=99.96 E-value=1.2e-28 Score=226.51 Aligned_cols=172 Identities=21% Similarity=0.307 Sum_probs=147.5
Q ss_pred cceEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc-cc
Q 015543 3 LEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL-DI 81 (405)
Q Consensus 3 lEa~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l-~~ 81 (405)
+..+||+||+|.||.+.||.||||++++.+++.|+..+++.||.++||||+|+++.+.+++|+|.|+..++..|+.+ .+
T Consensus 3 ~r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT~D~~~~~~~L~~~~~~ 82 (183)
T cd01453 3 MRHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLTGNPRKHIQALKTAREC 82 (183)
T ss_pred eeEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCCCCHHHHHHHhhcccCC
Confidence 46799999999999999999999999999999999999999999999999995555899999999999999999987 67
Q ss_pred CCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 015543 82 GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAA 161 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~ 161 (405)
.|+++|..||++|...|++++. ...++||||+++..++++.++..+++++++++|+|++|+||.+. +.|+.+++.
T Consensus 83 ~G~t~l~~aL~~A~~~l~~~~~-~~~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~~----~~L~~ia~~ 157 (183)
T cd01453 83 SGEPSLQNGLEMALESLKHMPS-HGSREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAEM----HICKEICKA 157 (183)
T ss_pred CCchhHHHHHHHHHHHHhcCCc-cCceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechHH----HHHHHHHHH
Confidence 8889999999999999998532 33566777777665667778888999999999999999999765 589999997
Q ss_pred HcCCCCcEEEEecCCCchhhhhh
Q 015543 162 VNNNDSSHLVHVPTGPNALSDVL 184 (405)
Q Consensus 162 vn~~d~Shlv~vp~g~~lLsD~l 184 (405)
+ +|+||.+..+. -|.+++
T Consensus 158 t---gG~~~~~~~~~--~l~~~~ 175 (183)
T cd01453 158 T---NGTYKVILDET--HLKELL 175 (183)
T ss_pred h---CCeeEeeCCHH--HHHHHH
Confidence 7 45777665543 355554
No 7
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=99.94 E-value=4.3e-27 Score=230.18 Aligned_cols=177 Identities=15% Similarity=0.229 Sum_probs=156.1
Q ss_pred cceEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc-cc
Q 015543 3 LEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL-DI 81 (405)
Q Consensus 3 lEa~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l-~~ 81 (405)
+...+|+||.|++|...||.|+|+.-+.+++..||.+||++||++|+|||.|+++.+...+.+.+|+..++..|..+ .+
T Consensus 87 iRhl~l~lD~Seam~e~Df~p~r~a~vikya~~Fv~eFf~qNPiSqlsii~irdg~a~~~s~~~gnpq~hi~~lkS~rd~ 166 (421)
T COG5151 87 IRHLHLILDVSEAMDESDFLPTRRANVIKYAEGFVPEFFSQNPISQLSIISIRDGCAKYTSSMDGNPQAHIGQLKSKRDC 166 (421)
T ss_pred hheeEEEEEhhhhhhhhhccchHHHHHHHHHHHHhHHHhccCCchheeeeehhhhHHHHhhhcCCCHHHHHHHhhccccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999998 79
Q ss_pred CCcccHHHHHHHHHHHhcccCCCCC-CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015543 82 GGEMNIAAGIQVAQLALKHRQNKNQ-RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~~k~~-~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~ 160 (405)
.|+++|+|||++|+..|-|. ..| .+.|+|++||..+.||+++++++.+|...+|+|.+||+.+++ .||+.+|+
T Consensus 167 ~gnfSLqNaLEmar~~l~~~--~~H~trEvLiifgS~st~DPgdi~~tid~Lv~~~IrV~~igL~aev----aicKeick 240 (421)
T COG5151 167 SGNFSLQNALEMARIELMKN--TMHGTREVLIIFGSTSTRDPGDIAETIDKLVAYNIRVHFIGLCAEV----AICKEICK 240 (421)
T ss_pred CCChhHHhHHHHhhhhhccc--ccccceEEEEEEeecccCCCccHHHHHHHHHhhceEEEEEeehhHH----HHHHHHHh
Confidence 99999999999999988884 445 344445558888889999999999999999999999999988 69999999
Q ss_pred HHcCCC-CcEEEEecCCCchhhhhhhcC
Q 015543 161 AVNNND-SSHLVHVPTGPNALSDVLISS 187 (405)
Q Consensus 161 ~vn~~d-~Shlv~vp~g~~lLsD~l~sS 187 (405)
++|+++ +-|+|.|..+ | |++.+.-+
T Consensus 241 aTn~~~e~~y~v~vde~-H-l~el~~E~ 266 (421)
T COG5151 241 ATNSSTEGRYYVPVDEG-H-LSELMREL 266 (421)
T ss_pred hcCcCcCceeEeeecHH-H-HHHHHHhc
Confidence 999876 5566666666 4 56555443
No 8
>PRK13685 hypothetical protein; Provisional
Probab=99.78 E-value=7.9e-18 Score=167.32 Aligned_cols=161 Identities=20% Similarity=0.305 Sum_probs=134.3
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGE 84 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~~G~ 84 (405)
.+|||||.|.||...|+.|+||...+.++..|++. .+|..+||||+|++. +.+++++|.|+..+...|..+.++|.
T Consensus 90 ~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~---l~~~d~vglv~Fa~~-a~~~~p~t~d~~~l~~~l~~l~~~~~ 165 (326)
T PRK13685 90 VVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADE---LTPGINLGLIAFAGT-ATVLVSPTTNREATKNAIDKLQLADR 165 (326)
T ss_pred eEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHh---CCCCCeEEEEEEcCc-eeecCCCCCCHHHHHHHHHhCCCCCC
Confidence 58999999999999999999999999999999985 468899999999988 68999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhccc------CCCCCCeEEEEEecCCCCCC-----hhHHHHHHHHHHhCCceEEEEEeCCCC-----
Q 015543 85 MNIAAGIQVAQLALKHR------QNKNQRQRIIVFAGSPVKYD-----RKVMEMIGKKLKKNSVAIDIVNFGEDD----- 148 (405)
Q Consensus 85 ~sL~~gL~iA~lALKhr------~~k~~~~RIVvFvgSpi~~d-----~~~l~~~akkLKknnI~VdII~FG~e~----- 148 (405)
++++.+|..|...+... ......++||+|+++..+.. +......++.+++.+|+|++||||...
T Consensus 166 T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~ 245 (326)
T PRK13685 166 TATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEI 245 (326)
T ss_pred cchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcCc
Confidence 99999999999887631 12234678999998876542 234567889999999999999999852
Q ss_pred -------CCcHHHHHHHHHHHcCCCCcEEEE
Q 015543 149 -------DGKPEKLEALLAAVNNNDSSHLVH 172 (405)
Q Consensus 149 -------~~n~~~L~~f~~~vn~~d~Shlv~ 172 (405)
.-+...|+++++.++ |.||..
T Consensus 246 ~g~~~~~~~d~~~L~~iA~~tg---G~~~~~ 273 (326)
T PRK13685 246 NGQRQPVPVDDESLKKIAQLSG---GEFYTA 273 (326)
T ss_pred CCceeeecCCHHHHHHHHHhcC---CEEEEc
Confidence 125678999998764 455543
No 9
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=99.76 E-value=6e-17 Score=140.54 Aligned_cols=164 Identities=25% Similarity=0.376 Sum_probs=129.0
Q ss_pred EEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhccccc----
Q 015543 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDI---- 81 (405)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~---- 81 (405)
+|||||+|.||...|+.++|+...++++..|+..+ |.++|||++|++. +.++.++|.|...+.+.|.++.+
T Consensus 2 vv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~l~~f~~~-~~~~~~~t~~~~~~~~~l~~~~~~~~~ 76 (172)
T PF13519_consen 2 VVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANL----PGDRVGLVSFSDS-SRTLSPLTSDKDELKNALNKLSPQGMP 76 (172)
T ss_dssp EEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHH----TTSEEEEEEESTS-CEEEEEEESSHHHHHHHHHTHHHHG--
T ss_pred EEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHC----CCCEEEEEEeccc-ccccccccccHHHHHHHhhcccccccC
Confidence 79999999999999999999999999999999973 7889999999987 58999999999999999998864
Q ss_pred CCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 015543 82 GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAA 161 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~ 161 (405)
+|.+.+..||..|...|... +..++.||+|.++.. ..+..++++.+++.+|+|++|+||... ...+.|+.+++.
T Consensus 77 ~~~t~~~~al~~a~~~~~~~--~~~~~~iv~iTDG~~---~~~~~~~~~~~~~~~i~i~~v~~~~~~-~~~~~l~~la~~ 150 (172)
T PF13519_consen 77 GGGTNLYDALQEAAKMLASS--DNRRRAIVLITDGED---NSSDIEAAKALKQQGITIYTVGIGSDS-DANEFLQRLAEA 150 (172)
T ss_dssp SSS--HHHHHHHHHHHHHC---SSEEEEEEEEES-TT---HCHHHHHHHHHHCTTEEEEEEEES-TT--EHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHhC--CCCceEEEEecCCCC---CcchhHHHHHHHHcCCeEEEEEECCCc-cHHHHHHHHHHh
Confidence 68899999999999999863 245666666666542 245557999999999999999999988 556799999987
Q ss_pred HcCCCCcEEEEecCCCchhhhhh
Q 015543 162 VNNNDSSHLVHVPTGPNALSDVL 184 (405)
Q Consensus 162 vn~~d~Shlv~vp~g~~lLsD~l 184 (405)
+++ +|+.+-..+.-|.+++
T Consensus 151 tgG----~~~~~~~~~~~l~~~~ 169 (172)
T PF13519_consen 151 TGG----RYFHVDNDPEDLDDAF 169 (172)
T ss_dssp TEE----EEEEE-SSSHHHHHHH
T ss_pred cCC----EEEEecCCHHHHHHHH
Confidence 753 6777633333465554
No 10
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.72 E-value=7.8e-16 Score=137.69 Aligned_cols=151 Identities=19% Similarity=0.251 Sum_probs=123.5
Q ss_pred eEEEEEeCChhhcCCCC-CCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccc---
Q 015543 5 ATMICIDNSEWMRNGDY-SPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELD--- 80 (405)
Q Consensus 5 a~~IvIDnSesMrngD~-~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~--- 80 (405)
.++||||.|.||...|| .++||...+.++..|+. ..|..+||||+|.+. +.++++++.+...+...|+.+.
T Consensus 4 ~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~----~~~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~l~~l~~~~ 78 (180)
T cd01467 4 DIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFID----RRENDRIGLVVFAGA-AFTQAPLTLDRESLKELLEDIKIGL 78 (180)
T ss_pred eEEEEEECCcccccccCCCCCHHHHHHHHHHHHHH----hCCCCeEEEEEEcCC-eeeccCCCccHHHHHHHHHHhhhcc
Confidence 47999999999999999 68999999998887776 468899999999886 5889999999888877777664
Q ss_pred cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC----------CCC
Q 015543 81 IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED----------DDG 150 (405)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e----------~~~ 150 (405)
++|.+++..||..|...|... +..++.||||.++..+.....+...++.+++.+|.|++|+||.. . .
T Consensus 79 ~~g~T~l~~al~~a~~~l~~~--~~~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~~~~~~~~~~~~~-~ 155 (180)
T cd01467 79 AGQGTAIGDAIGLAIKRLKNS--EAKERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGKSGSGPKPDGSTI-L 155 (180)
T ss_pred cCCCCcHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCCCCCcCCCCccc-C
Confidence 688999999999999888763 34567888888887655444556667788889999999999982 2 3
Q ss_pred cHHHHHHHHHHHc
Q 015543 151 KPEKLEALLAAVN 163 (405)
Q Consensus 151 n~~~L~~f~~~vn 163 (405)
....|+.|.+.++
T Consensus 156 ~~~~l~~la~~tg 168 (180)
T cd01467 156 DEDSLVEIADKTG 168 (180)
T ss_pred CHHHHHHHHHhcC
Confidence 4678999988764
No 11
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.70 E-value=1.7e-15 Score=133.57 Aligned_cols=145 Identities=20% Similarity=0.327 Sum_probs=121.1
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCC--CCHHHHHHhhcccccC
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--TDLGKILACMHELDIG 82 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT--~D~~kils~L~~l~~~ 82 (405)
.+++|||+|.||... ||..++.++..++.. .++..+|||++++++ +.++++++ .++..++..|..+.++
T Consensus 2 ~~~~vlD~S~SM~~~-----~~~~~k~a~~~~~~~---l~~~~~v~li~f~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~ 72 (170)
T cd01465 2 NLVFVIDRSGSMDGP-----KLPLVKSALKLLVDQ---LRPDDRLAIVTYDGA-AETVLPATPVRDKAAILAAIDRLTAG 72 (170)
T ss_pred cEEEEEECCCCCCCh-----hHHHHHHHHHHHHHh---CCCCCEEEEEEecCC-ccEEecCcccchHHHHHHHHHcCCCC
Confidence 378999999999743 588888899888885 678889999999987 58888766 5788889999999999
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCC---hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 015543 83 GEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYD---RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALL 159 (405)
Q Consensus 83 G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d---~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~ 159 (405)
|.+++..+|..|...++++..+...++||||+++..+++ ...+...++++++.+|.|++|+||. . .+...|+.|+
T Consensus 73 g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~-~-~~~~~l~~ia 150 (170)
T cd01465 73 GSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGD-N-YNEDLMEAIA 150 (170)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCC-C-cCHHHHHHHH
Confidence 999999999999999987544344488999999876543 4567788888899999999999994 3 5788999998
Q ss_pred H
Q 015543 160 A 160 (405)
Q Consensus 160 ~ 160 (405)
.
T Consensus 151 ~ 151 (170)
T cd01465 151 D 151 (170)
T ss_pred h
Confidence 6
No 12
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=99.66 E-value=9.3e-15 Score=132.47 Aligned_cols=151 Identities=19% Similarity=0.242 Sum_probs=124.0
Q ss_pred EEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCcc
Q 015543 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEM 85 (405)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~~G~~ 85 (405)
++||||.|.||..+ +||...+.++..|+... .++...||||+|.+..+.+++++|.++..+...|..+.++|.+
T Consensus 3 v~lvlD~SgSM~~~----~rl~~ak~a~~~~~~~~--~~~~d~v~lv~F~~~~~~~~~~~t~~~~~~~~~l~~l~~~G~T 76 (178)
T cd01451 3 VIFVVDASGSMAAR----HRMAAAKGAVLSLLRDA--YQRRDKVALIAFRGTEAEVLLPPTRSVELAKRRLARLPTGGGT 76 (178)
T ss_pred EEEEEECCccCCCc----cHHHHHHHHHHHHHHHh--hcCCCEEEEEEECCCCceEEeCCCCCHHHHHHHHHhCCCCCCC
Confidence 78999999999753 79999999999998653 3478899999999876789999999999999999999999999
Q ss_pred cHHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCCCC--Ch-hHH-HHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015543 86 NIAAGIQVAQLALK-HRQNKNQRQRIIVFAGSPVKY--DR-KVM-EMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (405)
Q Consensus 86 sL~~gL~iA~lALK-hr~~k~~~~RIVvFvgSpi~~--d~-~~l-~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~ 160 (405)
+|..||..|...|+ +...+..+++||||.++..++ ++ ... ..+++++++.+|.|.+|++|... .+...|+.+++
T Consensus 77 ~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~-~~~~~l~~iA~ 155 (178)
T cd01451 77 PLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRP-VRRGLAKDLAR 155 (178)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCc-cCccHHHHHHH
Confidence 99999999998882 211223468899999887664 22 233 67899999999999999999865 46679999998
Q ss_pred HHc
Q 015543 161 AVN 163 (405)
Q Consensus 161 ~vn 163 (405)
.++
T Consensus 156 ~tg 158 (178)
T cd01451 156 ALG 158 (178)
T ss_pred HcC
Confidence 764
No 13
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.61 E-value=5.2e-14 Score=125.02 Aligned_cols=154 Identities=15% Similarity=0.183 Sum_probs=123.4
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCC--CCHHHHHHhhccccc-
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--TDLGKILACMHELDI- 81 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT--~D~~kils~L~~l~~- 81 (405)
.++|+||.|.||.. .+|..++.++..|+..+...+...+||||+|++. +.++.+++ .|...++..|..+.+
T Consensus 2 Dvv~vlD~SgSm~~-----~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~-~~~~~~~~~~~~~~~~~~~l~~l~~~ 75 (164)
T cd01472 2 DIVFLVDGSESIGL-----SNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDD-PRTEFYLNTYRSKDDVLEAVKNLRYI 75 (164)
T ss_pred CEEEEEeCCCCCCH-----HHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCc-eeEEEecCCCCCHHHHHHHHHhCcCC
Confidence 37899999999974 6889999999999998765566789999999987 68889999 899999999999986
Q ss_pred CCcccHHHHHHHHHHHhccc---CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015543 82 GGEMNIAAGIQVAQLALKHR---QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr---~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f 158 (405)
+|.+++..||..|...|... ..++.++.||+|.++..+ ......+..|++.+|+|.+||+|.. +...|+.+
T Consensus 76 ~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~---~~~~~~~~~l~~~gv~i~~ig~g~~---~~~~L~~i 149 (164)
T cd01472 76 GGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQ---DDVEEPAVELKQAGIEVFAVGVKNA---DEEELKQI 149 (164)
T ss_pred CCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCC---chHHHHHHHHHHCCCEEEEEECCcC---CHHHHHHH
Confidence 77899999999999988863 234567778888877432 2345567789999999999999984 56788888
Q ss_pred HHHHcCCCCcEEEEe
Q 015543 159 LAAVNNNDSSHLVHV 173 (405)
Q Consensus 159 ~~~vn~~d~Shlv~v 173 (405)
+... ++.|...+
T Consensus 150 a~~~---~~~~~~~~ 161 (164)
T cd01472 150 ASDP---KELYVFNV 161 (164)
T ss_pred HCCC---chheEEec
Confidence 7533 35565543
No 14
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=99.60 E-value=2.8e-14 Score=133.58 Aligned_cols=145 Identities=16% Similarity=0.259 Sum_probs=116.0
Q ss_pred ceEEEEEeCChhhcCC-CC-CCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCC---------ceEEECC-CCCHHH
Q 015543 4 EATMICIDNSEWMRNG-DY-SPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG---------VRVLTTP-TTDLGK 71 (405)
Q Consensus 4 Ea~~IvIDnSesMrng-D~-~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~---------~~vLvtl-T~D~~k 71 (405)
|++++|||.|.||... |. .|+||+..+.++..|+..|.-.+|...||||.++... ..++.+| +.+...
T Consensus 2 e~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l~~~~~~~ 81 (218)
T cd01458 2 ESVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLDLDTPGAER 81 (218)
T ss_pred cEEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeecCCCCCHHH
Confidence 8999999999999855 33 4999999999999999999889999999999999863 2356676 455544
Q ss_pred HHHhhcccc-----------cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCC-----ChhHHHHHHHHHHhC
Q 015543 72 ILACMHELD-----------IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY-----DRKVMEMIGKKLKKN 135 (405)
Q Consensus 72 ils~L~~l~-----------~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~-----d~~~l~~~akkLKkn 135 (405)
+..-+..+. ..++++|..||.+|...|.+...+...+|||+|+++.... ....+.++++.|++.
T Consensus 82 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~ 161 (218)
T cd01458 82 VEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDK 161 (218)
T ss_pred HHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 433333222 2457999999999999999855556789999999865542 246677899999999
Q ss_pred CceEEEEEeCCCC
Q 015543 136 SVAIDIVNFGEDD 148 (405)
Q Consensus 136 nI~VdII~FG~e~ 148 (405)
+|.|.+|++|...
T Consensus 162 gI~i~~i~i~~~~ 174 (218)
T cd01458 162 GIELELFPLSSPG 174 (218)
T ss_pred CcEEEEEecCCCC
Confidence 9999999999976
No 15
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.60 E-value=4.7e-14 Score=130.51 Aligned_cols=150 Identities=23% Similarity=0.317 Sum_probs=118.2
Q ss_pred ceEEEEEeCChhhc-CCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCC-----ceEEE---CCC--------
Q 015543 4 EATMICIDNSEWMR-NGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG-----VRVLT---TPT-------- 66 (405)
Q Consensus 4 Ea~~IvIDnSesMr-ngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~-----~~vLv---tlT-------- 66 (405)
-.++||||+|.||. ..+-.++||...+.++..|+.. .+|..+|||++|++.. .++++ +++
T Consensus 21 ~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~---l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 97 (206)
T cd01456 21 PNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANA---LPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNGFPS 97 (206)
T ss_pred CcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHh---CCCCceEEEEEecCCCCCCccccccccccccccccCCCCc
Confidence 35899999999998 3445689999999999999986 5678999999999842 23333 222
Q ss_pred CCHHHHHHhhcccc-cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhC-----CceEE
Q 015543 67 TDLGKILACMHELD-IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKN-----SVAID 140 (405)
Q Consensus 67 ~D~~kils~L~~l~-~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKkn-----nI~Vd 140 (405)
.++..+...|..+. ++|.++|..||..|...|. +...++||||+++..++.. +....++.+++. +|+|+
T Consensus 98 ~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~----~~~~~~iillTDG~~~~~~-~~~~~~~~~~~~~~~~~~i~i~ 172 (206)
T cd01456 98 AQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD----PGRVNVVVLITDGEDTCGP-DPCEVARELAKRRTPAPPIKVN 172 (206)
T ss_pred ccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC----CCCcceEEEEcCCCccCCC-CHHHHHHHHHHhcCCCCCceEE
Confidence 47888899999998 9999999999999998886 2234789999988766543 445566666654 99999
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHc
Q 015543 141 IVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 141 II~FG~e~~~n~~~L~~f~~~vn 163 (405)
+|+||... +...|+.+++.++
T Consensus 173 ~igiG~~~--~~~~l~~iA~~tg 193 (206)
T cd01456 173 VIDFGGDA--DRAELEAIAEATG 193 (206)
T ss_pred EEEecCcc--cHHHHHHHHHhcC
Confidence 99999864 5689999988664
No 16
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.59 E-value=2.9e-14 Score=126.74 Aligned_cols=148 Identities=16% Similarity=0.258 Sum_probs=116.9
Q ss_pred EEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCC----CHHHHHHhhccccc
Q 015543 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT----DLGKILACMHELDI 81 (405)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~----D~~kils~L~~l~~ 81 (405)
++|+||.|.||.. +||...+.++..+++. ..+..+||||+|++. ++++.+++. +...+...|..+.+
T Consensus 3 v~~vlD~S~SM~~-----~rl~~ak~a~~~l~~~---l~~~~~~~li~F~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~ 73 (155)
T cd01466 3 LVAVLDVSGSMAG-----DKLQLVKHALRFVISS---LGDADRLSIVTFSTS-AKRLSPLRRMTAKGKRSAKRVVDGLQA 73 (155)
T ss_pred EEEEEECCCCCCc-----HHHHHHHHHHHHHHHh---CCCcceEEEEEecCC-ccccCCCcccCHHHHHHHHHHHHhccC
Confidence 6899999999964 3999999999988875 456789999999987 688888873 45677888889999
Q ss_pred CCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 015543 82 GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAA 161 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~ 161 (405)
+|.+++..||..|...|+.+..++..++|||+.++..+.. ....++++.+|.|++|+||... +...|+.+.+.
T Consensus 74 ~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~~-----~~~~~~~~~~v~v~~igig~~~--~~~~l~~iA~~ 146 (155)
T cd01466 74 GGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHG-----AVVLRADNAPIPIHTFGLGASH--DPALLAFIAEI 146 (155)
T ss_pred CCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCcc-----hhhhcccCCCceEEEEecCCCC--CHHHHHHHHhc
Confidence 9999999999999999987545566789999998865433 2233456789999999999754 56789999886
Q ss_pred HcCCCCcEEE
Q 015543 162 VNNNDSSHLV 171 (405)
Q Consensus 162 vn~~d~Shlv 171 (405)
++ +..|||
T Consensus 147 t~--G~~~~~ 154 (155)
T cd01466 147 TG--GTFSYV 154 (155)
T ss_pred cC--ceEEEe
Confidence 53 344444
No 17
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.59 E-value=6.7e-14 Score=127.90 Aligned_cols=147 Identities=14% Similarity=0.162 Sum_probs=121.9
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhcc------CCcCCcEEEEEecCCCceEEECCC---CCHHHHHHh
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQ------SNPENTVGILTMGGKGVRVLTTPT---TDLGKILAC 75 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~------~NPes~VGlvtmag~~~~vLvtlT---~D~~kils~ 75 (405)
.++|+||.|.||.. ++|+.++++++.|+..+.. .+...+||||++++. +.+..+++ .+...+++.
T Consensus 4 dvv~vlD~S~Sm~~-----~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~-~~~~~~l~~~~~~~~~l~~~ 77 (186)
T cd01480 4 DITFVLDSSESVGL-----QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQ-QEVEAGFLRDIRNYTSLKEA 77 (186)
T ss_pred eEEEEEeCCCccch-----hhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCC-ceeeEecccccCCHHHHHHH
Confidence 57999999999963 6788889999999998744 356689999999977 68999998 789999999
Q ss_pred hcccc-cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHH
Q 015543 76 MHELD-IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPE 153 (405)
Q Consensus 76 L~~l~-~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~ 153 (405)
|++++ .+|.+++..||..|...|.....+..++.||+|.++.... +...+.+.++.+|+.+|.|.+|++|. . |..
T Consensus 78 i~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~-~--~~~ 154 (186)
T cd01480 78 VDNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS-Q--NEE 154 (186)
T ss_pred HHhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc-c--chH
Confidence 99997 5899999999999999987633456788899999887643 35578889999999999999999998 3 445
Q ss_pred HHHHHHH
Q 015543 154 KLEALLA 160 (405)
Q Consensus 154 ~L~~f~~ 160 (405)
.|+.+..
T Consensus 155 ~L~~IA~ 161 (186)
T cd01480 155 PLSRIAC 161 (186)
T ss_pred HHHHHHc
Confidence 6777754
No 18
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.58 E-value=1.4e-13 Score=116.15 Aligned_cols=150 Identities=23% Similarity=0.417 Sum_probs=128.9
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCC--CHHHHHHhhcccc--
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT--DLGKILACMHELD-- 80 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~--D~~kils~L~~l~-- 80 (405)
.++|+||.|.|| .++||...+.++..++..+...++..++||+.+.+. +.++.+++. +...+...+..+.
T Consensus 2 ~v~~viD~S~Sm-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (161)
T cd00198 2 DIVFLLDVSGSM-----GGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSN-ARVVLPLTTDTDKADLLEAIDALKKG 75 (161)
T ss_pred cEEEEEeCCCCc-----CcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCc-cceeecccccCCHHHHHHHHHhcccC
Confidence 589999999999 678999999999999999888888999999999986 588888876 7888888888886
Q ss_pred cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015543 81 IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (405)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~ 160 (405)
.+|.+++..+|..+...+.++..+...++||+|.++........+....+++++++|.|.+|++|.. .+...|+.|+.
T Consensus 76 ~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~~g~~--~~~~~l~~l~~ 153 (161)
T cd00198 76 LGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGIGDD--ANEDELKEIAD 153 (161)
T ss_pred CCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEEcCCC--CCHHHHHHHhc
Confidence 7899999999999999998754456788888888888655555788999999999999999999983 45678888887
Q ss_pred HH
Q 015543 161 AV 162 (405)
Q Consensus 161 ~v 162 (405)
..
T Consensus 154 ~~ 155 (161)
T cd00198 154 KT 155 (161)
T ss_pred cc
Confidence 55
No 19
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=99.56 E-value=2e-13 Score=132.81 Aligned_cols=156 Identities=24% Similarity=0.276 Sum_probs=124.5
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhccccc---
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDI--- 81 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~--- 81 (405)
.++||||.|.||.. ++...+.++..|+...+ .|..+||||+|++. +.++.++|.|+..+..+|..+.+
T Consensus 55 ~vvlvlD~SgSM~~------~~~~a~~a~~~~l~~~l--~~~d~v~lv~f~~~-~~~~~~~t~~~~~l~~~l~~l~~~~~ 125 (296)
T TIGR03436 55 TVGLVIDTSGSMRN------DLDRARAAAIRFLKTVL--RPNDRVFVVTFNTR-LRLLQDFTSDPRLLEAALNRLKPPLR 125 (296)
T ss_pred eEEEEEECCCCchH------HHHHHHHHHHHHHHhhC--CCCCEEEEEEeCCc-eeEeecCCCCHHHHHHHHHhccCCCc
Confidence 68999999999973 68888899999998643 58999999999976 68999999999999999999987
Q ss_pred ------------CCcccHHHHHHHHHHH-hcccC-CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 82 ------------GGEMNIAAGIQVAQLA-LKHRQ-NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 82 ------------~G~~sL~~gL~iA~lA-LKhr~-~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
+|.++|..||..|.+- ++... ....++.||+|+++..+.....+..+++.|++++|.|++|+||..
T Consensus 126 ~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~~~~~~~~~~~~~~~~~~v~vy~I~~~~~ 205 (296)
T TIGR03436 126 TDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDNRSRDTLERAIDAAQRADVAIYSIDARGL 205 (296)
T ss_pred cccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEeccCcc
Confidence 8999999999877543 33221 112467888888887665667788999999999999999999854
Q ss_pred CC-----------CcHHHHHHHHHHHcCCCCcEEEE
Q 015543 148 DD-----------GKPEKLEALLAAVNNNDSSHLVH 172 (405)
Q Consensus 148 ~~-----------~n~~~L~~f~~~vn~~d~Shlv~ 172 (405)
.. .+.+.|+.|++.++ |.+|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~L~~iA~~TG---G~~~~~ 238 (296)
T TIGR03436 206 RAPDLGAGAKAGLGGPEALERLAEETG---GRAFYV 238 (296)
T ss_pred ccCCcccccccCCCcHHHHHHHHHHhC---CeEecc
Confidence 20 14679999999874 445544
No 20
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.56 E-value=2.2e-13 Score=118.69 Aligned_cols=150 Identities=21% Similarity=0.302 Sum_probs=126.2
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECC--CCCHHHHHHhhccccc-
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTP--TTDLGKILACMHELDI- 81 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtl--T~D~~kils~L~~l~~- 81 (405)
.++||||.|.||+ ++||.+++.++..|+..+...++..+|||++|.+. ...+.++ +.+...+...+..+.+
T Consensus 3 ~v~l~vD~S~SM~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~ 76 (177)
T smart00327 3 DVVFLLDGSGSMG-----PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDD-ATVLFPLNDSRSKDALLEALASLSYK 76 (177)
T ss_pred cEEEEEeCCCccc-----hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCC-ceEEEcccccCCHHHHHHHHHhcCCC
Confidence 4789999999997 78999999999999999999999999999999986 5778887 8999999999999985
Q ss_pred -CCcccHHHHHHHHHHHhcccC---CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHH
Q 015543 82 -GGEMNIAAGIQVAQLALKHRQ---NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEA 157 (405)
Q Consensus 82 -~G~~sL~~gL~iA~lALKhr~---~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~ 157 (405)
.|.+++..+|..|...+.++. +...++.||+|.++.... ...+...++++++++|.|.+|+||... +...|+.
T Consensus 77 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~-~~~~~~~~~~~~~~~i~i~~i~~~~~~--~~~~l~~ 153 (177)
T smart00327 77 LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESND-GGDLLKAAKELKRSGVKVFVVGVGNDV--DEEELKK 153 (177)
T ss_pred CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCC-CccHHHHHHHHHHCCCEEEEEEccCcc--CHHHHHH
Confidence 888999999999999986322 223367778777666443 367889999999999999999999753 5678999
Q ss_pred HHHHHc
Q 015543 158 LLAAVN 163 (405)
Q Consensus 158 f~~~vn 163 (405)
|+....
T Consensus 154 ~~~~~~ 159 (177)
T smart00327 154 LASAPG 159 (177)
T ss_pred HhCCCc
Confidence 887553
No 21
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=99.55 E-value=2.9e-13 Score=122.57 Aligned_cols=170 Identities=14% Similarity=0.163 Sum_probs=121.7
Q ss_pred EEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCC----CHHH---HHHhhcc
Q 015543 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT----DLGK---ILACMHE 78 (405)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~----D~~k---ils~L~~ 78 (405)
++||||.|.||... +||...+.++..|+..+--.++..+||||+|++. +.++++++. ++.. ++..|..
T Consensus 3 v~~vlD~SgSm~~~----~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~-~~~~~~l~~~~~~~~~~~~~~i~~l~~ 77 (186)
T cd01471 3 LYLLVDGSGSIGYS----NWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTN-AKELIRLSSPNSTNKDLALNAIRALLS 77 (186)
T ss_pred EEEEEeCCCCccch----hhHHHHHHHHHHHHHhcccCCCceEEEEEEecCC-ceEEEECCCccccchHHHHHHHHHHHh
Confidence 78999999999754 4688999999999998655566779999999987 577777654 4555 4445444
Q ss_pred c-ccCCcccHHHHHHHHHHHhccc--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 015543 79 L-DIGGEMNIAAGIQVAQLALKHR--QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKL 155 (405)
Q Consensus 79 l-~~~G~~sL~~gL~iA~lALKhr--~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L 155 (405)
. .++|.+++..||..|...|.+. ..+..++.||+|+++..+. .......+++|++.+|.|.+||||... |.+.|
T Consensus 78 ~~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~-~~~~~~~a~~l~~~gv~v~~igiG~~~--d~~~l 154 (186)
T cd01471 78 LYYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDS-KFRTLKEARKLRERGVIIAVLGVGQGV--NHEEN 154 (186)
T ss_pred CcCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCC-CcchhHHHHHHHHCCCEEEEEEeehhh--CHHHH
Confidence 3 5789999999999999888762 1245667888888887544 344557899999999999999999855 56677
Q ss_pred HHHHHHHcCCCCcEEEEecCCCchhhhhh
Q 015543 156 EALLAAVNNNDSSHLVHVPTGPNALSDVL 184 (405)
Q Consensus 156 ~~f~~~vn~~d~Shlv~vp~g~~lLsD~l 184 (405)
+.|...-.+.+-|+.+..-+=.+ |..+|
T Consensus 155 ~~ia~~~~~~~~~~~~~~~~~~~-~~~~~ 182 (186)
T cd01471 155 RSLVGCDPDDSPCPLYLQSSWSE-VQNVI 182 (186)
T ss_pred HHhcCCCCCCCCCCeeecCCHHH-HHHHh
Confidence 77654221122344444443322 34444
No 22
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.53 E-value=4.3e-13 Score=115.69 Aligned_cols=147 Identities=19% Similarity=0.239 Sum_probs=122.9
Q ss_pred EEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCC--HHHHHHhhccccc-C
Q 015543 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTD--LGKILACMHELDI-G 82 (405)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D--~~kils~L~~l~~-~ 82 (405)
++|+||+|.||+. .+|...+.++..|+..+...++..++||+++.++ +.+.++++.+ ..++++.|..+.. .
T Consensus 3 i~~llD~S~Sm~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~ 76 (161)
T cd01450 3 IVFLLDGSESVGP-----ENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDD-VRVEFSLNDYKSKDDLLKAVKNLKYLG 76 (161)
T ss_pred EEEEEeCCCCcCH-----HHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCC-ceEEEECCCCCCHHHHHHHHHhcccCC
Confidence 7899999999974 3899999999999999888889999999999987 5788888876 8888888888743 4
Q ss_pred C-cccHHHHHHHHHHHhcccC--CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 015543 83 G-EMNIAAGIQVAQLALKHRQ--NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALL 159 (405)
Q Consensus 83 G-~~sL~~gL~iA~lALKhr~--~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~ 159 (405)
| .+++..||..|...+..+. .+..++.||+|.++..+... ++..+++.+++++|.|++|++|. . +.+.|+.|.
T Consensus 77 ~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~-~~~~~~~~~~~~~v~v~~i~~g~-~--~~~~l~~la 152 (161)
T cd01450 77 GGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGG-DPKEAAAKLKDEGIKVFVVGVGP-A--DEEELREIA 152 (161)
T ss_pred CCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCc-chHHHHHHHHHCCCEEEEEeccc-c--CHHHHHHHh
Confidence 3 8999999999999998754 24677888888888755433 78999999999999999999998 3 457888887
Q ss_pred HHH
Q 015543 160 AAV 162 (405)
Q Consensus 160 ~~v 162 (405)
...
T Consensus 153 ~~~ 155 (161)
T cd01450 153 SCP 155 (161)
T ss_pred CCC
Confidence 644
No 23
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.52 E-value=6e-13 Score=121.64 Aligned_cols=148 Identities=16% Similarity=0.121 Sum_probs=112.9
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCC---------CCHHHHHHh
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT---------TDLGKILAC 75 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT---------~D~~kils~ 75 (405)
.++||||.|.||.. +||+..+.++..|+.. .++...||||+|++. +.++++++ .+..+++..
T Consensus 15 ~vv~llD~SgSM~~-----~~l~~ak~~~~~ll~~---l~~~d~v~lv~F~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (190)
T cd01463 15 DIVILLDVSGSMTG-----QRLHLAKQTVSSILDT---LSDNDFFNIITFSNE-VNPVVPCFNDTLVQATTSNKKVLKEA 85 (190)
T ss_pred eEEEEEECCCCCCc-----HHHHHHHHHHHHHHHh---CCCCCEEEEEEeCCC-eeEEeeecccceEecCHHHHHHHHHH
Confidence 58999999999963 6999999999999886 577889999999988 57776654 356788999
Q ss_pred hcccccCCcccHHHHHHHHHHHhcc---c----CCCCCCeEEEEEecCCCCCChhHHHHHHHHHH--hCCceEEEEEeCC
Q 015543 76 MHELDIGGEMNIAAGIQVAQLALKH---R----QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLK--KNSVAIDIVNFGE 146 (405)
Q Consensus 76 L~~l~~~G~~sL~~gL~iA~lALKh---r----~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLK--knnI~VdII~FG~ 146 (405)
|..+.++|.+++..||..|...|+. . ..+...+.||||.++..+. ...++...++.+ ..+|+|.+||||.
T Consensus 86 l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~-~~~~~~~~~~~~~~~~~v~i~tigiG~ 164 (190)
T cd01463 86 LDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPEN-YKEIFDKYNWDKNSEIPVRVFTYLIGR 164 (190)
T ss_pred HhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCc-HhHHHHHhcccccCCCcEEEEEEecCC
Confidence 9999999999999999999988875 1 1123457899999887543 333333221111 1259999999999
Q ss_pred CCCCcHHHHHHHHHHHc
Q 015543 147 DDDGKPEKLEALLAAVN 163 (405)
Q Consensus 147 e~~~n~~~L~~f~~~vn 163 (405)
+. .+...|+.+....+
T Consensus 165 ~~-~d~~~L~~lA~~~~ 180 (190)
T cd01463 165 EV-TDRREIQWMACENK 180 (190)
T ss_pred cc-ccchHHHHHHhhcC
Confidence 86 46779999987553
No 24
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=99.52 E-value=1e-12 Score=119.32 Aligned_cols=161 Identities=14% Similarity=0.190 Sum_probs=124.7
Q ss_pred EEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCC--CHHHHHHhhccc-ccC
Q 015543 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT--DLGKILACMHEL-DIG 82 (405)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~--D~~kils~L~~l-~~~ 82 (405)
++|+||.|.||. |.+|+.++..++.|+..+....+..+||||++++. +.+..+++. +...+++++..+ ..+
T Consensus 3 i~fvlD~S~S~~-----~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~-~~~~~~l~~~~~~~~~~~~i~~~~~~~ 76 (177)
T cd01469 3 IVFVLDGSGSIY-----PDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSES-FRTEFTLNEYRTKEEPLSLVKHISQLL 76 (177)
T ss_pred EEEEEeCCCCCC-----HHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCc-eeEEEecCccCCHHHHHHHHHhCccCC
Confidence 789999999985 78999999999999998877778999999999988 688888883 556777888777 467
Q ss_pred CcccHHHHHHHHHHHhcc---cCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC--CcHHHHHH
Q 015543 83 GEMNIAAGIQVAQLALKH---RQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDD--GKPEKLEA 157 (405)
Q Consensus 83 G~~sL~~gL~iA~lALKh---r~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~--~n~~~L~~ 157 (405)
|.+++..||..|...|.. ...+..++.+|||.++..+.+ ......++.||+.||.|++||+|.... .+.+.|+.
T Consensus 77 g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~-~~~~~~~~~~k~~gv~v~~Vgvg~~~~~~~~~~~L~~ 155 (177)
T cd01469 77 GLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDD-PLLKDVIPQAEREGIIRYAIGVGGHFQRENSREELKT 155 (177)
T ss_pred CCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCc-cccHHHHHHHHHCCcEEEEEEecccccccccHHHHHH
Confidence 889999999999877632 112356788888888876543 333667889999999999999998651 12455666
Q ss_pred HHHHHcCCCCcEEEEecCC
Q 015543 158 LLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 158 f~~~vn~~d~Shlv~vp~g 176 (405)
++. .....|+..+..-
T Consensus 156 ias---~p~~~h~f~~~~~ 171 (177)
T cd01469 156 IAS---KPPEEHFFNVTDF 171 (177)
T ss_pred Hhc---CCcHHhEEEecCH
Confidence 543 3355798888653
No 25
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.52 E-value=9.4e-13 Score=115.93 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=120.0
Q ss_pred ceEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCC--C---CHHHHHHhhcc
Q 015543 4 EATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--T---DLGKILACMHE 78 (405)
Q Consensus 4 Ea~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT--~---D~~kils~L~~ 78 (405)
-.++||||.|.||. ..||+..+.++..|+.. .++...|+|++|+++ +..+.+++ . +....+..|..
T Consensus 3 ~~v~~vlD~S~SM~-----~~~~~~~~~al~~~l~~---l~~~~~~~l~~Fs~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 73 (171)
T cd01461 3 KEVVFVIDTSGSMS-----GTKIEQTKEALLTALKD---LPPGDYFNIIGFSDT-VEEFSPSSVSATAENVAAAIEYVNR 73 (171)
T ss_pred ceEEEEEECCCCCC-----ChhHHHHHHHHHHHHHh---CCCCCEEEEEEeCCC-ceeecCcceeCCHHHHHHHHHHHHh
Confidence 35889999999996 35799999999888875 556779999999987 45555432 2 34556677788
Q ss_pred cccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015543 79 LDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (405)
Q Consensus 79 l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f 158 (405)
+.++|.+++..||..|...|+. .+...+.||+|.++.. .++.++.+.++++.+.+|+|.+|+||... +...|+.+
T Consensus 74 ~~~~g~T~l~~al~~a~~~l~~--~~~~~~~iillTDG~~-~~~~~~~~~~~~~~~~~i~i~~i~~g~~~--~~~~l~~i 148 (171)
T cd01461 74 LQALGGTNMNDALEAALELLNS--SPGSVPQIILLTDGEV-TNESQILKNVREALSGRIRLFTFGIGSDV--NTYLLERL 148 (171)
T ss_pred cCCCCCcCHHHHHHHHHHhhcc--CCCCccEEEEEeCCCC-CCHHHHHHHHHHhcCCCceEEEEEeCCcc--CHHHHHHH
Confidence 8889999999999999988865 2456788899988874 45667888888888889999999999865 46799999
Q ss_pred HHHHcCCCCcEEEEecCC
Q 015543 159 LAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 159 ~~~vn~~d~Shlv~vp~g 176 (405)
++.++ | .|+.|...
T Consensus 149 a~~~g---G-~~~~~~~~ 162 (171)
T cd01461 149 AREGR---G-IARRIYET 162 (171)
T ss_pred HHcCC---C-eEEEecCh
Confidence 88663 3 45555544
No 26
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=99.51 E-value=7e-13 Score=121.77 Aligned_cols=160 Identities=14% Similarity=0.212 Sum_probs=119.4
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCC----CCHHHHHHhhcccc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT----TDLGKILACMHELD 80 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT----~D~~kils~L~~l~ 80 (405)
.++||||.|.||. ++||+..+.++..|++..-...+..+||||+|++. +.++++++ .+...++..|..+.
T Consensus 2 di~~vlD~SgSM~-----~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 75 (198)
T cd01470 2 NIYIALDASDSIG-----EEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASD-PKEIVSIRDFNSNDADDVIKRLEDFN 75 (198)
T ss_pred cEEEEEECCCCcc-----HHHHHHHHHHHHHHHHHccccCCCceEEEEEecCC-ceEEEecccCCCCCHHHHHHHHHhCC
Confidence 3799999999995 67999999999999998654556789999999988 57777665 46788999998874
Q ss_pred -----cCCcccHHHHHHHHHHHhccc------CCCCCCeEEEEEecCCCCC--ChhHHHHHHHHH----------HhCCc
Q 015543 81 -----IGGEMNIAAGIQVAQLALKHR------QNKNQRQRIIVFAGSPVKY--DRKVMEMIGKKL----------KKNSV 137 (405)
Q Consensus 81 -----~~G~~sL~~gL~iA~lALKhr------~~k~~~~RIVvFvgSpi~~--d~~~l~~~akkL----------KknnI 137 (405)
.+|.+++..||..+...|... .....+++||||+++..+. ++....+.++.+ |+.+|
T Consensus 76 ~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v 155 (198)
T cd01470 76 YDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSDNPREDYL 155 (198)
T ss_pred cccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChhHHHHHHHHHHhcccccccchhcce
Confidence 357899999999998766321 1123567889999887553 444444444444 56689
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHHHcCCCC-cEEEEecC
Q 015543 138 AIDIVNFGEDDDGKPEKLEALLAAVNNNDS-SHLVHVPT 175 (405)
Q Consensus 138 ~VdII~FG~e~~~n~~~L~~f~~~vn~~d~-Shlv~vp~ 175 (405)
.|++||||... +.+.|+.+.... ++ .|+..+..
T Consensus 156 ~i~~iGvG~~~--~~~~L~~iA~~~---~g~~~~f~~~~ 189 (198)
T cd01470 156 DVYVFGVGDDV--NKEELNDLASKK---DNERHFFKLKD 189 (198)
T ss_pred eEEEEecCccc--CHHHHHHHhcCC---CCCceEEEeCC
Confidence 99999999865 578888887633 34 47776654
No 27
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.51 E-value=1.4e-12 Score=116.50 Aligned_cols=155 Identities=14% Similarity=0.174 Sum_probs=121.2
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCC--CCHHHHHHhhcccc-c
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--TDLGKILACMHELD-I 81 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT--~D~~kils~L~~l~-~ 81 (405)
.++++||.|.||.. .+|...+.++..|+..+.-.++..+||||++++. +.+..+++ .+...++..|.++. +
T Consensus 2 Dv~~vlD~S~Sm~~-----~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~-~~~~~~l~~~~~~~~l~~~l~~~~~~ 75 (164)
T cd01482 2 DIVFLVDGSWSIGR-----SNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDD-PRTEFDLNAYTSKEDVLAAIKNLPYK 75 (164)
T ss_pred CEEEEEeCCCCcCh-----hhHHHHHHHHHHHHhheeeCCCceEEEEEEECCC-eeEEEecCCCCCHHHHHHHHHhCcCC
Confidence 37999999999964 5788899999999998755667899999999988 58888876 67888999999886 6
Q ss_pred CCcccHHHHHHHHHHHhccc---CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015543 82 GGEMNIAAGIQVAQLALKHR---QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr---~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f 158 (405)
+|.+++..||..|...|..+ ..+..++.||||.++..+ .++...++.||+.||.|.+||+|.. +.+.|+.+
T Consensus 76 ~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~---~~~~~~a~~lk~~gi~i~~ig~g~~---~~~~L~~i 149 (164)
T cd01482 76 GGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQ---DDVELPARVLRNLGVNVFAVGVKDA---DESELKMI 149 (164)
T ss_pred CCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCC---chHHHHHHHHHHCCCEEEEEecCcC---CHHHHHHH
Confidence 88999999999887654322 123467778888887643 3567889999999999999999973 35677777
Q ss_pred HHHHcCCCCcEEEEec
Q 015543 159 LAAVNNNDSSHLVHVP 174 (405)
Q Consensus 159 ~~~vn~~d~Shlv~vp 174 (405)
+.. ....|+..|.
T Consensus 150 a~~---~~~~~~~~~~ 162 (164)
T cd01482 150 ASK---PSETHVFNVA 162 (164)
T ss_pred hCC---CchheEEEcC
Confidence 653 2456776654
No 28
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.50 E-value=1.1e-12 Score=140.59 Aligned_cols=167 Identities=18% Similarity=0.275 Sum_probs=135.6
Q ss_pred ceEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCC
Q 015543 4 EATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGG 83 (405)
Q Consensus 4 Ea~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~~G 83 (405)
-.++||||.|.||. + +||.+.+.|+..|+..- ..+..+||||+|+|..++++++||.+...+...|..+..+|
T Consensus 402 ~~vvfvvD~SGSM~-~----~rl~~aK~a~~~ll~~a--y~~rD~v~lI~F~g~~a~~~lppT~~~~~~~~~L~~l~~gG 474 (584)
T PRK13406 402 TTTIFVVDASGSAA-L----HRLAEAKGAVELLLAEA--YVRRDQVALVAFRGRGAELLLPPTRSLVRAKRSLAGLPGGG 474 (584)
T ss_pred ccEEEEEECCCCCc-H----hHHHHHHHHHHHHHHhh--cCCCCEEEEEEECCCceeEEcCCCcCHHHHHHHHhcCCCCC
Confidence 36899999999994 2 59999999999998652 24678999999999888999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCC----------hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHH
Q 015543 84 EMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYD----------RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPE 153 (405)
Q Consensus 84 ~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d----------~~~l~~~akkLKknnI~VdII~FG~e~~~n~~ 153 (405)
+|.|..||..|...|+....+....+|||++++-.+.. ..+...+++++++.+|.+.+|.+|... ..
T Consensus 475 gTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~~---~~ 551 (584)
T PRK13406 475 GTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTSPRP---QP 551 (584)
T ss_pred CChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecCCCC---cH
Confidence 99999999999988875434456789999998887642 145678899999999999999999654 35
Q ss_pred HHHHHHHHHcCCCCcEEEEecCC-Cchhhhhh
Q 015543 154 KLEALLAAVNNNDSSHLVHVPTG-PNALSDVL 184 (405)
Q Consensus 154 ~L~~f~~~vn~~d~Shlv~vp~g-~~lLsD~l 184 (405)
.++.|++.+++ .|+.+|.- ..-|++++
T Consensus 552 ~~~~LA~~~gg----~y~~l~~~~a~~~~~~v 579 (584)
T PRK13406 552 QARALAEAMGA----RYLPLPRADAGRLSQAV 579 (584)
T ss_pred HHHHHHHhcCC----eEEECCCCCHHHHHHHH
Confidence 78999987753 56677653 23355544
No 29
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=99.47 E-value=2.8e-12 Score=116.79 Aligned_cols=154 Identities=14% Similarity=0.134 Sum_probs=113.2
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhh---ccccc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACM---HELDI 81 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L---~~l~~ 81 (405)
.++|+||.|.||... .+. .++.++.++..+. .|..+||||+|++. ++++.++|.+...+..+| ..+.+
T Consensus 6 Dvv~llD~SgSm~~~--~~~----~~~~~~~l~~~~~--~~~~rvglv~Fs~~-~~~~~~l~~~~~~~~~~l~~l~~~~~ 76 (185)
T cd01474 6 DLYFVLDKSGSVAAN--WIE----IYDFVEQLVDRFN--SPGLRFSFITFSTR-ATKILPLTDDSSAIIKGLEVLKKVTP 76 (185)
T ss_pred eEEEEEeCcCchhhh--HHH----HHHHHHHHHHHcC--CCCcEEEEEEecCC-ceEEEeccccHHHHHHHHHHHhccCC
Confidence 489999999999742 223 3466777776653 47899999999977 799999999887776664 66677
Q ss_pred CCcccHHHHHHHHHHHhc--ccCCCCCCeEEEEEecCCCC-CChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015543 82 GGEMNIAAGIQVAQLALK--HRQNKNQRQRIIVFAGSPVK-YDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALK--hr~~k~~~~RIVvFvgSpi~-~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f 158 (405)
+|.+.+..||+.|...|. .+..+...+.||+|.++..+ .........++.|++++|.|++||+|. .|..-|+.+
T Consensus 77 ~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~~~~~~~a~~l~~~gv~i~~vgv~~---~~~~~L~~i 153 (185)
T cd01474 77 SGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHKYPEHEAKLSRKLGAIVYCVGVTD---FLKSQLINI 153 (185)
T ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCCcchHHHHHHHHHcCCEEEEEeech---hhHHHHHHH
Confidence 899999999999997773 22222334778888888753 234567778899999999999999954 355667777
Q ss_pred HHHHcCCCCcEEEEecC
Q 015543 159 LAAVNNNDSSHLVHVPT 175 (405)
Q Consensus 159 ~~~vn~~d~Shlv~vp~ 175 (405)
+. +..|+..+..
T Consensus 154 A~-----~~~~~f~~~~ 165 (185)
T cd01474 154 AD-----SKEYVFPVTS 165 (185)
T ss_pred hC-----CCCeeEecCc
Confidence 64 2246664443
No 30
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=99.47 E-value=3.1e-12 Score=119.25 Aligned_cols=148 Identities=22% Similarity=0.313 Sum_probs=109.9
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccC--Cc----CCcEEEEEecCCCceEEECCCC--CHHHHHHhh
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQS--NP----ENTVGILTMGGKGVRVLTTPTT--DLGKILACM 76 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~--NP----es~VGlvtmag~~~~vLvtlT~--D~~kils~L 76 (405)
.+||+||.|.||. |.||+..+..+..|+..+.-. +| ..+||||++++. +.+..+|+. +...++.+|
T Consensus 21 DivfvlD~S~Sm~-----~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~-a~~~~~L~d~~~~~~~~~ai 94 (193)
T cd01477 21 DIVFVVDNSKGMT-----QGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSN-ATVVADLNDLQSFDDLYSQI 94 (193)
T ss_pred eEEEEEeCCCCcc-----hhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCc-eEEEEecccccCHHHHHHHH
Confidence 4799999999995 668988888888777764331 33 479999999987 799999984 556777777
Q ss_pred cc----cccCCcccHHHHHHHHHHHhcc--cC-CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC
Q 015543 77 HE----LDIGGEMNIAAGIQVAQLALKH--RQ-NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDD 149 (405)
Q Consensus 77 ~~----l~~~G~~sL~~gL~iA~lALKh--r~-~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~ 149 (405)
+. +..+|+++++.||+.|...|+. +. .++.++.+|||.++.......++...+++||+++|.|++||+|...
T Consensus 95 ~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVGiG~~~- 173 (193)
T cd01477 95 QGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITVAFTQDE- 173 (193)
T ss_pred HHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEEeCCCC-
Confidence 74 3456789999999999999973 11 2334555777775543322255778899999999999999999865
Q ss_pred CcHHHHHHHHH
Q 015543 150 GKPEKLEALLA 160 (405)
Q Consensus 150 ~n~~~L~~f~~ 160 (405)
....++++.+
T Consensus 174 -d~~~~~~L~~ 183 (193)
T cd01477 174 -SSNLLDKLGK 183 (193)
T ss_pred -CHHHHHHHHH
Confidence 2345666654
No 31
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=99.44 E-value=3.2e-12 Score=125.19 Aligned_cols=170 Identities=15% Similarity=0.196 Sum_probs=127.8
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhccccc---
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDI--- 81 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~--- 81 (405)
-+|||||+|.||...|..|+|++ .+. ++..++.+-+..+|||+.|++. +.++.|+|.|+.. ..+++-+.+
T Consensus 62 qIvlaID~S~SM~~~~~~~~ale-ak~----lIs~al~~Le~g~vgVv~Fg~~-~~~v~Plt~d~~~-~a~~~~l~~~~f 134 (266)
T cd01460 62 QILIAIDDSKSMSENNSKKLALE-SLC----LVSKALTLLEVGQLGVCSFGED-VQILHPFDEQFSS-QSGPRILNQFTF 134 (266)
T ss_pred eEEEEEecchhcccccccccHHH-HHH----HHHHHHHhCcCCcEEEEEeCCC-ceEeCCCCCCchh-hHHHHHhCcccC
Confidence 47999999999999999999998 233 4555556888999999999987 7999999999997 666655432
Q ss_pred -CCcccHHHHHHHHHHHhcccC--CCCC--CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHH---
Q 015543 82 -GGEMNIAAGIQVAQLALKHRQ--NKNQ--RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPE--- 153 (405)
Q Consensus 82 -~G~~sL~~gL~iA~lALKhr~--~k~~--~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~--- 153 (405)
.+++++..+|..|...|..+- .... .+-|||+++|-...+++....+++++++++|.|.+|++=... .+..
T Consensus 135 ~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~-~~~SI~d 213 (266)
T cd01460 135 QQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPD-NKQSILD 213 (266)
T ss_pred CCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCC-CCCCccc
Confidence 367999999999999997641 1111 277778888885455566667799999999999999997762 1212
Q ss_pred ------------HHHHHHHHHcCCCCcEEEEecCC---Cchhhhhhh
Q 015543 154 ------------KLEALLAAVNNNDSSHLVHVPTG---PNALSDVLI 185 (405)
Q Consensus 154 ------------~L~~f~~~vn~~d~Shlv~vp~g---~~lLsD~l~ 185 (405)
+++.|.+ .-...|||+|..= |+.|+|+|-
T Consensus 214 ~~~~~~~~~~~~~l~~Yl~---~fpfpYy~~~~~~~~lp~~l~~~lr 257 (266)
T cd01460 214 IKVVSFKNDKSGVITPYLD---EFPFPYYVIVRDLNQLPSVLSDALR 257 (266)
T ss_pred ccccccCCCCccHHHHHHh---cCCCCeEEEecChhHhHHHHHHHHH
Confidence 4445544 3356788888652 567888774
No 32
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=99.41 E-value=6.5e-12 Score=116.50 Aligned_cols=147 Identities=20% Similarity=0.272 Sum_probs=115.3
Q ss_pred EEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCC----CHHHHHHhhcccc-
Q 015543 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT----DLGKILACMHELD- 80 (405)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~----D~~kils~L~~l~- 80 (405)
++|+||.|.||...+|.+.+.. .++.+++.+.-.....+||||.+++. +++.++++. +...++..|..+.
T Consensus 3 i~fllD~S~Si~~~~f~~~~~~----f~~~lv~~l~i~~~~~rvgvv~fs~~-~~~~~~~~~~~~~~~~~l~~~i~~l~~ 77 (192)
T cd01473 3 LTLILDESASIGYSNWRKDVIP----FTEKIINNLNISKDKVHVGILLFAEK-NRDVVPFSDEERYDKNELLKKINDLKN 77 (192)
T ss_pred EEEEEeCCCcccHHHHHHHHHH----HHHHHHHhCccCCCccEEEEEEecCC-ceeEEecCcccccCHHHHHHHHHHHHh
Confidence 7899999999998888666544 56667776666777899999999987 689988884 4667888877763
Q ss_pred ---cCCcccHHHHHHHHHHHhcccCC--CCCCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHH
Q 015543 81 ---IGGEMNIAAGIQVAQLALKHRQN--KNQRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEK 154 (405)
Q Consensus 81 ---~~G~~sL~~gL~iA~lALKhr~~--k~~~~RIVvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~ 154 (405)
.+|.+++..||+.|...+....+ +..++.+|||++|..+. +...+...++.||+.||.|.+||+|... ...
T Consensus 78 ~~~~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~~---~~e 154 (192)
T cd01473 78 SYRSGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAAS---ENK 154 (192)
T ss_pred ccCCCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEecccc---HHH
Confidence 47899999999999888764322 23477788888888664 4556889999999999999999999854 346
Q ss_pred HHHHHH
Q 015543 155 LEALLA 160 (405)
Q Consensus 155 L~~f~~ 160 (405)
|+.++.
T Consensus 155 l~~ia~ 160 (192)
T cd01473 155 LKLLAG 160 (192)
T ss_pred HHHhcC
Confidence 777653
No 33
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.40 E-value=2.5e-11 Score=107.15 Aligned_cols=144 Identities=19% Similarity=0.265 Sum_probs=112.2
Q ss_pred EEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCC-CceEEECCC--CCHHHHHHhhccccc-
Q 015543 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGK-GVRVLTTPT--TDLGKILACMHELDI- 81 (405)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~-~~~vLvtlT--~D~~kils~L~~l~~- 81 (405)
++|+||.|.||.. +|..+++++..++..+....+..+||||+|++. .+.+..+++ .++..++..|+.+..
T Consensus 3 v~~llD~S~Sm~~------~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~~~~~~l~~~i~~l~~~ 76 (163)
T cd01476 3 LLFVLDSSGSVRG------KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKHNDGEELLEKVDNLRFI 76 (163)
T ss_pred EEEEEeCCcchhh------hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCCCCHHHHHHHHHhCccC
Confidence 7899999999963 678889999999988766677899999999984 356777776 477889999999974
Q ss_pred CCcccHHHHHHHHHHHhccc--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHh-CCceEEEEEeCCCCCCcHHHHHHH
Q 015543 82 GGEMNIAAGIQVAQLALKHR--QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKK-NSVAIDIVNFGEDDDGKPEKLEAL 158 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr--~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKk-nnI~VdII~FG~e~~~n~~~L~~f 158 (405)
+|.+++..||..|...|..+ ..+..++.||||+++..+.+ +...++.|++ .+|.|..|++|.....|...|..+
T Consensus 77 gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~---~~~~~~~l~~~~~v~v~~vg~g~~~~~~~~~L~~i 153 (163)
T cd01476 77 GGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDD---PEKQARILRAVPNIETFAVGTGDPGTVDTEELHSI 153 (163)
T ss_pred CCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCc---hHHHHHHHhhcCCCEEEEEECCCccccCHHHHHHH
Confidence 77899999999999988622 22345688888888765444 4566777888 999999999998732345555555
No 34
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=99.37 E-value=1.5e-11 Score=136.16 Aligned_cols=144 Identities=17% Similarity=0.244 Sum_probs=115.9
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCC-----CHHHHHHhhccc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT-----DLGKILACMHEL 79 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~-----D~~kils~L~~l 79 (405)
.++||||.|.||..+| ||...+.|+..|+... .+|...||||+|.+. +.++.+|+. ++..+...|. +
T Consensus 306 ~VVLVLDvSGSM~g~d----RL~~lkqAA~~fL~~~--l~~~DrVGLVtFsss-A~vl~pLt~Its~~dr~aL~~~L~-~ 377 (863)
T TIGR00868 306 IVCLVLDKSGSMTVED----RLKRMNQAAKLFLLQT--VEKGSWVGMVTFDSA-AYIKNELIQITSSAERDALTANLP-T 377 (863)
T ss_pred eEEEEEECCccccccC----HHHHHHHHHHHHHHHh--CCCCCEEEEEEECCc-eeEeeccccCCcHHHHHHHHHhhc-c
Confidence 4789999999998765 9999999999998765 467899999999987 688877762 5555666664 4
Q ss_pred ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 015543 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALL 159 (405)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~ 159 (405)
.++|+++|..||+.|...|+++..+...+.|||+.++..+. +..+++.+++.+|+|++|+||... ...|+.++
T Consensus 378 ~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~----~~~~l~~lk~~gVtI~TIg~G~da---d~~L~~IA 450 (863)
T TIGR00868 378 AASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNT----ISSCFEEVKQSGAIIHTIALGPSA---AKELEELS 450 (863)
T ss_pred ccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCC----HHHHHHHHHHcCCEEEEEEeCCCh---HHHHHHHH
Confidence 57899999999999999999875555678999998876432 345677889999999999999865 25689998
Q ss_pred HHHc
Q 015543 160 AAVN 163 (405)
Q Consensus 160 ~~vn 163 (405)
+.++
T Consensus 451 ~~TG 454 (863)
T TIGR00868 451 DMTG 454 (863)
T ss_pred HhcC
Confidence 8653
No 35
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.37 E-value=4.7e-11 Score=104.64 Aligned_cols=135 Identities=10% Similarity=0.122 Sum_probs=105.0
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGE 84 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~~G~ 84 (405)
.++||||.|.||.. +|+...+.++..|+..... +..+|+||+|.++......+.+.+..+++..|..+.++|+
T Consensus 2 ~v~illD~SgSM~~-----~k~~~a~~~~~~l~~~~~~--~~~~v~li~F~~~~~~~~~~~~~~~~~~~~~l~~~~~~gg 74 (152)
T cd01462 2 PVILLVDQSGSMYG-----APEEVAKAVALALLRIALA--ENRDTYLILFDSEFQTKIVDKTDDLEEPVEFLSGVQLGGG 74 (152)
T ss_pred CEEEEEECCCCCCC-----CHHHHHHHHHHHHHHHHHH--cCCcEEEEEeCCCceEEecCCcccHHHHHHHHhcCCCCCC
Confidence 47999999999963 4888888888888876543 4678999999988333334566788889999998889999
Q ss_pred ccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 85 MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
+++..+|..+...|.+. ...+..||+|+++.-...+..+.+.++..++.+|+|++|++|...
T Consensus 75 T~l~~al~~a~~~l~~~--~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~ 136 (152)
T cd01462 75 TDINKALRYALELIERR--DPRKADIVLITDGYEGGVSDELLREVELKRSRVARFVALALGDHG 136 (152)
T ss_pred cCHHHHHHHHHHHHHhc--CCCCceEEEECCCCCCCCCHHHHHHHHHHHhcCcEEEEEEecCCC
Confidence 99999999998888753 334678888888853444555555566677778999999999955
No 36
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.37 E-value=2.2e-11 Score=109.98 Aligned_cols=147 Identities=14% Similarity=0.141 Sum_probs=112.1
Q ss_pred cceEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccC---CcCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc
Q 015543 3 LEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQS---NPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL 79 (405)
Q Consensus 3 lEa~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~---NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l 79 (405)
.=.++||||.|.||.. .+|...+.++..|+...... .+...||||+|.+. ++++.++|..... .+..+
T Consensus 3 ~~~v~~llD~SgSM~~-----~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~-a~~~~~l~~~~~~---~~~~l 73 (176)
T cd01464 3 RLPIYLLLDTSGSMAG-----EPIEALNQGLQMLQSELRQDPYALESVEISVITFDSA-ARVIVPLTPLESF---QPPRL 73 (176)
T ss_pred CCCEEEEEECCCCCCC-----hHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCC-ceEecCCccHHhc---CCCcc
Confidence 3358999999999954 36788888999998875432 25678999999986 6999998864322 24556
Q ss_pred ccCCcccHHHHHHHHHHHhcccCC-------CCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcH
Q 015543 80 DIGGEMNIAAGIQVAQLALKHRQN-------KNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKP 152 (405)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~-------k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~ 152 (405)
..+|++++..||..|...|+.+.. ...++.||+|+++..+.+.....+.++.+++.++.|.+||+|... |.
T Consensus 74 ~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~i~~igiG~~~--~~ 151 (176)
T cd01464 74 TASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAIERIKEARDSKGRIVACAVGPKA--DL 151 (176)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHHHHHHhhcccCCcEEEEEecccc--CH
Confidence 788999999999999999865321 223567888888875555555557788888889999999999944 67
Q ss_pred HHHHHHHH
Q 015543 153 EKLEALLA 160 (405)
Q Consensus 153 ~~L~~f~~ 160 (405)
+.|+.|+.
T Consensus 152 ~~L~~ia~ 159 (176)
T cd01464 152 DTLKQITE 159 (176)
T ss_pred HHHHHHHC
Confidence 88888875
No 37
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.37 E-value=4.3e-11 Score=107.67 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=109.0
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCC-----ceEEE--CCCCC-HHHHHHhh
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG-----VRVLT--TPTTD-LGKILACM 76 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~-----~~vLv--tlT~D-~~kils~L 76 (405)
+++|+||.|.||... +||+..+.++..|+..... +..++||++|.+.. ..++. +.+.. ...+...|
T Consensus 2 ~v~~llD~SgSM~~~----~kl~~ak~a~~~l~~~l~~--~~d~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 75 (174)
T cd01454 2 AVTLLLDLSGSMRSD----RRIDVAKKAAVLLAEALEA--CGVPHAILGFTTDAGGRERVRWIKIKDFDESLHERARKRL 75 (174)
T ss_pred EEEEEEECCCCCCCC----cHHHHHHHHHHHHHHHHHH--cCCcEEEEEecCCCCCccceEEEEecCcccccchhHHHHH
Confidence 589999999999844 8999999999999887554 78999999999872 23343 22222 13567788
Q ss_pred cccccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCC---------hhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 77 HELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYD---------RKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 77 ~~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d---------~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
..+.++|.+.+..||..|...|..+ +..++.||+|+++..+.. ..+..+.++.+++.+|.|++||+|..
T Consensus 76 ~~~~~~g~T~~~~al~~a~~~l~~~--~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~ 153 (174)
T cd01454 76 AALSPGGNTRDGAAIRHAAERLLAR--PEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRD 153 (174)
T ss_pred HccCCCCCCcHHHHHHHHHHHHhcC--CCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCc
Confidence 8899999999999999999999864 345677888887764421 12333348899999999999999997
Q ss_pred CC-CcHHHHHHHH
Q 015543 148 DD-GKPEKLEALL 159 (405)
Q Consensus 148 ~~-~n~~~L~~f~ 159 (405)
.. .+.+-++.+.
T Consensus 154 ~~~~~~~~~~~~~ 166 (174)
T cd01454 154 ATTVDKEYLKNIF 166 (174)
T ss_pred cccchHHHHHHhh
Confidence 72 1344555443
No 38
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.35 E-value=3.5e-11 Score=129.16 Aligned_cols=151 Identities=15% Similarity=0.220 Sum_probs=124.7
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGE 84 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~~G~ 84 (405)
.++||||.|.||. .+||...+.++..|+...+. +..+||||+|++..+++++++|.+...+...|..+.++|.
T Consensus 409 ~v~fvvD~SGSM~-----~~rl~~aK~av~~Ll~~~~~--~~D~v~Li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gGg 481 (589)
T TIGR02031 409 LLIFVVDASGSAA-----VARMSEAKGAVELLLGEAYV--HRDQVSLIAFRGTAAEVLLPPSRSVEQAKRRLDVLPGGGG 481 (589)
T ss_pred eEEEEEECCCCCC-----hHHHHHHHHHHHHHHHhhcc--CCCEEEEEEECCCCceEECCCCCCHHHHHHHHhcCCCCCC
Confidence 3789999999994 36999999999999985332 4578999999988778999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCC--C-------------hhHHHHHHHHHHhCCceEEEEEeCCCCC
Q 015543 85 MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY--D-------------RKVMEMIGKKLKKNSVAIDIVNFGEDDD 149 (405)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~--d-------------~~~l~~~akkLKknnI~VdII~FG~e~~ 149 (405)
+.|..||..|...++....+..+.+||||+++-.+. + ..++..+++++++.+|.+.+|++|...
T Consensus 482 TpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vid~~~~~- 560 (589)
T TIGR02031 482 TPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALALARKIREAGMPALVIDTAMRF- 560 (589)
T ss_pred CcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHHHHHHHHHHhcCCeEEEEeCCCCC-
Confidence 999999999998887432334567899999887652 1 245688899999999999999999764
Q ss_pred CcHHHHHHHHHHHc
Q 015543 150 GKPEKLEALLAAVN 163 (405)
Q Consensus 150 ~n~~~L~~f~~~vn 163 (405)
.....++.|++..+
T Consensus 561 ~~~~~~~~lA~~~~ 574 (589)
T TIGR02031 561 VSTGFAQKLARKMG 574 (589)
T ss_pred ccchHHHHHHHhcC
Confidence 34557999988664
No 39
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=99.35 E-value=4.3e-11 Score=105.13 Aligned_cols=166 Identities=21% Similarity=0.284 Sum_probs=124.4
Q ss_pred EEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCC--CHHHHHHhh-ccc-cc
Q 015543 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT--DLGKILACM-HEL-DI 81 (405)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~--D~~kils~L-~~l-~~ 81 (405)
++|+||.|.+|.. .+|..+++++..|+..+...++..+||||++++. +.++.+++. +..+++..+ ..+ ..
T Consensus 2 ivflvD~S~sm~~-----~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~ 75 (178)
T PF00092_consen 2 IVFLVDTSGSMSG-----DNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDS-ARVLFSLTDYQSKNDLLNAINDSIPSS 75 (178)
T ss_dssp EEEEEE-STTSCH-----HHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSS-EEEEEETTSHSSHHHHHHHHHTTGGCC
T ss_pred EEEEEeCCCCCch-----HHHHHHHHHHHHHHHhhhccccccccceeeeecc-ccccccccccccccccccccccccccc
Confidence 7999999999987 7799999999999998879999999999999988 588888876 578888888 555 66
Q ss_pred CCcccHHHHHHHHHHHhccc---CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015543 82 GGEMNIAAGIQVAQLALKHR---QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr---~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f 158 (405)
+|.+++..||..|...|..+ ..+..++-||+|+++....++.......+..++.+|.|-.||+ .. .+.+.|+.|
T Consensus 76 ~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~i~~~~ig~--~~-~~~~~l~~l 152 (178)
T PF00092_consen 76 GGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSPSEEAANLKKSNGIKVIAIGI--DN-ADNEELREL 152 (178)
T ss_dssp BSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGHHHHHHHHHHHCTEEEEEEEE--SC-CHHHHHHHH
T ss_pred chhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcchHHHHHHHHHhcCcEEEEEec--Cc-CCHHHHHHH
Confidence 88999999999999999865 3356778888888888765444444444444445888888887 23 456778887
Q ss_pred HHHHcCCCCcEEEEecCCCchhhhh
Q 015543 159 LAAVNNNDSSHLVHVPTGPNALSDV 183 (405)
Q Consensus 159 ~~~vn~~d~Shlv~vp~g~~lLsD~ 183 (405)
+.. .....|+..+..-. .|+++
T Consensus 153 a~~--~~~~~~~~~~~~~~-~l~~~ 174 (178)
T PF00092_consen 153 ASC--PTSEGHVFYLADFS-DLSQI 174 (178)
T ss_dssp SHS--STCHHHEEEESSHH-HHHHH
T ss_pred hCC--CCCCCcEEEcCCHH-HHHHH
Confidence 652 22446787776543 34443
No 40
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=99.35 E-value=6.2e-11 Score=111.51 Aligned_cols=157 Identities=14% Similarity=0.162 Sum_probs=119.3
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCC--CCHHHHHHhhcccc-c
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--TDLGKILACMHELD-I 81 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT--~D~~kils~L~~l~-~ 81 (405)
.++|+||.|.||. +++|+.++.++..|++.+.-.+...+||||+++.. +.+..+++ .+...+..+|..+. .
T Consensus 4 DlvfllD~S~Sm~-----~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~-~~~~~~l~~~~~~~~l~~~i~~i~~~ 77 (224)
T cd01475 4 DLVFLIDSSRSVR-----PENFELVKQFLNQIIDSLDVGPDATRVGLVQYSST-VKQEFPLGRFKSKADLKRAVRRMEYL 77 (224)
T ss_pred cEEEEEeCCCCCC-----HHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCc-eeEEecccccCCHHHHHHHHHhCcCC
Confidence 5899999999995 67899999999999998655556789999999988 69999998 56778899998885 4
Q ss_pred CCcccHHHHHHHHHHH-hcc----cCCC-CCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 015543 82 GGEMNIAAGIQVAQLA-LKH----RQNK-NQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKL 155 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lA-LKh----r~~k-~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L 155 (405)
+|.+.+..||..|... +.. |+.. +.++.+|||+++... .++...++.||+.+|.|.+||+|.. +...|
T Consensus 78 ~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~---~~~~~~a~~lk~~gv~i~~VgvG~~---~~~~L 151 (224)
T cd01475 78 ETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQ---DDVSEVAAKARALGIEMFAVGVGRA---DEEEL 151 (224)
T ss_pred CCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCc---ccHHHHHHHHHHCCcEEEEEeCCcC---CHHHH
Confidence 6778899999988754 332 3321 225667788877643 3477789999999999999999973 34567
Q ss_pred HHHHHHHcCCCCcEEEEecCC
Q 015543 156 EALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 156 ~~f~~~vn~~d~Shlv~vp~g 176 (405)
+.++. .....|+..+..-
T Consensus 152 ~~ias---~~~~~~~f~~~~~ 169 (224)
T cd01475 152 REIAS---EPLADHVFYVEDF 169 (224)
T ss_pred HHHhC---CCcHhcEEEeCCH
Confidence 76653 2234677777543
No 41
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.31 E-value=1.2e-10 Score=125.87 Aligned_cols=152 Identities=20% Similarity=0.269 Sum_probs=125.5
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGE 84 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~~G~ 84 (405)
.++|+||.|.||.. .+||...+.++..|+..-+ ....+||||+|++..+++++++|.+...+...|..+.++|.
T Consensus 467 ~vv~vvD~SgSM~~----~~rl~~ak~a~~~ll~~a~--~~~D~v~lI~F~g~~a~~~~p~t~~~~~~~~~L~~l~~gG~ 540 (633)
T TIGR02442 467 LVIFVVDASGSMAA----RGRMAAAKGAVLSLLRDAY--QKRDKVALITFRGEEAEVLLPPTSSVELAARRLEELPTGGR 540 (633)
T ss_pred eEEEEEECCccCCC----ccHHHHHHHHHHHHHHHhh--cCCCEEEEEEECCCCceEEcCCCCCHHHHHHHHHhCCCCCC
Confidence 58899999999973 3799999999988876432 34689999999987789999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc--cCCCCCCeEEEEEecCCCCCC------hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHH
Q 015543 85 MNIAAGIQVAQLALKH--RQNKNQRQRIIVFAGSPVKYD------RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLE 156 (405)
Q Consensus 85 ~sL~~gL~iA~lALKh--r~~k~~~~RIVvFvgSpi~~d------~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~ 156 (405)
+.|..||..|...|+. +..+..+..||||+++..+.. .++...++++|++.+|.+.+|+.+... .....|+
T Consensus 541 Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt~~~~-~~~~~~~ 619 (633)
T TIGR02442 541 TPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESGF-VRLGLAE 619 (633)
T ss_pred CCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCCC-cchhHHH
Confidence 9999999999998883 223456778888888776431 346778899999999999999987754 4567899
Q ss_pred HHHHHHc
Q 015543 157 ALLAAVN 163 (405)
Q Consensus 157 ~f~~~vn 163 (405)
.|++.++
T Consensus 620 ~lA~~~g 626 (633)
T TIGR02442 620 DLARALG 626 (633)
T ss_pred HHHHhhC
Confidence 9998774
No 42
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.25 E-value=1.2e-10 Score=109.19 Aligned_cols=166 Identities=14% Similarity=0.152 Sum_probs=115.7
Q ss_pred EEEEEeCChhhcCCC-C---CCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEE------CCCCCHH---HH
Q 015543 6 TMICIDNSEWMRNGD-Y---SPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLT------TPTTDLG---KI 72 (405)
Q Consensus 6 ~~IvIDnSesMrngD-~---~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLv------tlT~D~~---ki 72 (405)
+||+||.|.||..-+ | ..+||++.+..+..|+. |.+..+...||+ +|..+ ++. |||.|.. .+
T Consensus 3 l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~-f~~~r~~DriG~---~g~~~-~~~~lt~d~p~t~d~~~~~~l 77 (191)
T cd01455 3 LKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDG-FEDKIQYDIIGH---SGDGP-CVPFVKTNHPPKNNKERLETL 77 (191)
T ss_pred eEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHH-HHHhCccceeee---cCccc-ccCccccccCcccchhHHHHH
Confidence 799999999996433 2 25899999999888863 345778888894 55543 223 4555554 44
Q ss_pred HHhhcccccC--C-cccHHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCCCCChhHHHHH-HHHHHhCCceEEEEEeCCC
Q 015543 73 LACMHELDIG--G-EMNIAAGIQVAQLALK-HRQNKNQRQRIIVFAGSPVKYDRKVMEMI-GKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 73 ls~L~~l~~~--G-~~sL~~gL~iA~lALK-hr~~k~~~~RIVvFvgSpi~~d~~~l~~~-akkLKknnI~VdII~FG~e 147 (405)
..-|+.++++ | .+. .||.+|...|+ + .+...+.||+|+++.++...-++.++ ++.+++.+|+|++|++|..
T Consensus 78 ~~~l~~~q~g~ag~~Ta--dAi~~av~rl~~~--~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~~ 153 (191)
T cd01455 78 KMMHAHSQFCWSGDHTV--EATEFAIKELAAK--EDFDEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGSL 153 (191)
T ss_pred HHHHHhcccCccCccHH--HHHHHHHHHHHhc--CcCCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecCC
Confidence 5555555543 4 455 99999999997 6 45567899999999987766778885 6888999999999999986
Q ss_pred CCCcHHHHHHHHHHHcCCCCcEEEEecCC--CchhhhhhhcC
Q 015543 148 DDGKPEKLEALLAAVNNNDSSHLVHVPTG--PNALSDVLISS 187 (405)
Q Consensus 148 ~~~n~~~L~~f~~~vn~~d~Shlv~vp~g--~~lLsD~l~sS 187 (405)
.+ +.|+.+.+.+ +|.+|..-... +. ++..|++|
T Consensus 154 d~---~~l~~iA~~t---gG~~F~A~d~~~L~~-iy~~I~~~ 188 (191)
T cd01455 154 SD---EADQLQRELP---AGKAFVCMDTSELPH-IMQQIFTS 188 (191)
T ss_pred CH---HHHHHHHhCC---CCcEEEeCCHHHHHH-HHHHHHHH
Confidence 52 4577666544 45666665543 22 34444444
No 43
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=99.23 E-value=2.5e-10 Score=100.34 Aligned_cols=143 Identities=20% Similarity=0.275 Sum_probs=113.7
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECC----C-CCHHHHHHhhccc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTP----T-TDLGKILACMHEL 79 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtl----T-~D~~kils~L~~l 79 (405)
.+||+||.|.||.-.- ..++++++.+++. ..|...+.||+++.. +..+.+- | .+....+..|..+
T Consensus 2 ~vvilvD~S~Sm~g~~------~~~k~al~~~l~~---L~~~d~fnii~f~~~-~~~~~~~~~~~~~~~~~~a~~~I~~~ 71 (155)
T PF13768_consen 2 DVVILVDTSGSMSGEK------ELVKDALRAILRS---LPPGDRFNIIAFGSS-VRPLFPGLVPATEENRQEALQWIKSL 71 (155)
T ss_pred eEEEEEeCCCCCCCcH------HHHHHHHHHHHHh---CCCCCEEEEEEeCCE-eeEcchhHHHHhHHHHHHHHHHHHHh
Confidence 4799999999996433 7899999999987 889999999999986 4544432 1 3556678888899
Q ss_pred cc-CCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015543 80 DI-GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (405)
Q Consensus 80 ~~-~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f 158 (405)
.+ .|.+++..+|+.|...+ ..+.....||+|+++.....+..+...+++.. .+|+|.+|+||... +...|++|
T Consensus 72 ~~~~G~t~l~~aL~~a~~~~---~~~~~~~~IilltDG~~~~~~~~i~~~v~~~~-~~~~i~~~~~g~~~--~~~~L~~L 145 (155)
T PF13768_consen 72 EANSGGTDLLAALRAALALL---QRPGCVRAIILLTDGQPVSGEEEILDLVRRAR-GHIRIFTFGIGSDA--DADFLREL 145 (155)
T ss_pred cccCCCccHHHHHHHHHHhc---ccCCCccEEEEEEeccCCCCHHHHHHHHHhcC-CCceEEEEEECChh--HHHHHHHH
Confidence 88 99999999999888766 24567889999997775555667777777643 68999999999965 47899999
Q ss_pred HHHHc
Q 015543 159 LAAVN 163 (405)
Q Consensus 159 ~~~vn 163 (405)
++..+
T Consensus 146 A~~~~ 150 (155)
T PF13768_consen 146 ARATG 150 (155)
T ss_pred HHcCC
Confidence 88654
No 44
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.21 E-value=1.4e-09 Score=98.65 Aligned_cols=153 Identities=14% Similarity=0.195 Sum_probs=119.0
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCC--CCHHHHHHhhcccccC
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--TDLGKILACMHELDIG 82 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT--~D~~kils~L~~l~~~ 82 (405)
.++++||.|.|+. +..|+.++..+..|+..+.=.+...+||||++++. +.+...+. .+...++++|.++...
T Consensus 2 DivfllD~S~Si~-----~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~-~~~~~~l~~~~~~~~l~~~i~~i~~~ 75 (165)
T cd01481 2 DIVFLIDGSDNVG-----SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDT-PRPEFYLNTHSTKADVLGAVRRLRLR 75 (165)
T ss_pred CEEEEEeCCCCcC-----HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCC-eeEEEeccccCCHHHHHHHHHhcccC
Confidence 4799999999984 78899999999999998766667789999999987 57777776 3778899999999654
Q ss_pred -C-cccHHHHHHHHHHHhccc-----CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 015543 83 -G-EMNIAAGIQVAQLALKHR-----QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKL 155 (405)
Q Consensus 83 -G-~~sL~~gL~iA~lALKhr-----~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L 155 (405)
| .++...||..+...+-.. +.++.++.+|||+++... +++...++.||+.||.|..||.|. .|.+-|
T Consensus 76 ~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~---d~~~~~a~~lr~~gv~i~~vG~~~---~~~~eL 149 (165)
T cd01481 76 GGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQ---DDVERPAVALKRAGIVPFAIGARN---ADLAEL 149 (165)
T ss_pred CCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCc---chHHHHHHHHHHCCcEEEEEeCCc---CCHHHH
Confidence 4 378999999987665432 223456778888888744 357888999999999999999983 355667
Q ss_pred HHHHHHHcCCCCcEEEEec
Q 015543 156 EALLAAVNNNDSSHLVHVP 174 (405)
Q Consensus 156 ~~f~~~vn~~d~Shlv~vp 174 (405)
+.++. +.+|+.++.
T Consensus 150 ~~ias-----~p~~vf~v~ 163 (165)
T cd01481 150 QQIAF-----DPSFVFQVS 163 (165)
T ss_pred HHHhC-----CCccEEEec
Confidence 76653 345776664
No 45
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.19 E-value=6.4e-10 Score=102.74 Aligned_cols=153 Identities=19% Similarity=0.218 Sum_probs=113.0
Q ss_pred ceEEEEEeCChhhcCCC--CCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhccccc
Q 015543 4 EATMICIDNSEWMRNGD--YSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDI 81 (405)
Q Consensus 4 Ea~~IvIDnSesMrngD--~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~ 81 (405)
..++|+||.|.||...+ ..|+||..++.++..++..-. ......++++.+.+.. ..+.+++ ...+...+.++.+
T Consensus 3 ~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~-~~D~d~i~l~~f~~~~-~~~~~~~--~~~v~~~~~~~~p 78 (199)
T cd01457 3 RDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCE-EYDSDGITVYLFSGDF-RRYDNVN--SSKVDQLFAENSP 78 (199)
T ss_pred cCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHH-hcCCCCeEEEEecCCc-cccCCcC--HHHHHHHHhcCCC
Confidence 45899999999999887 578999999999999887543 3344569999998774 5556666 7788888888889
Q ss_pred CCcccHHHHHHHHHHHhcccCC----CCCCeEEEEEecCCCCCChhH----HHHHHHHHHh-CCceEEEEEeCCCCCCcH
Q 015543 82 GGEMNIAAGIQVAQLALKHRQN----KNQRQRIIVFAGSPVKYDRKV----MEMIGKKLKK-NSVAIDIVNFGEDDDGKP 152 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~~----k~~~~RIVvFvgSpi~~d~~~----l~~~akkLKk-nnI~VdII~FG~e~~~n~ 152 (405)
.|.+++..+|+.|...+..+.. +....-||||+++..+ +... |.+.+++|++ ++|.+.+|++|... ...
T Consensus 79 ~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~-d~~~~~~~i~~a~~~l~~~~~i~i~~v~vG~~~-~~~ 156 (199)
T cd01457 79 DGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPD-DKDAVERVIIKASDELDADNELAISFLQIGRDP-AAT 156 (199)
T ss_pred CCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCC-cHHHHHHHHHHHHHhhccccCceEEEEEeCCcH-HHH
Confidence 9999999999999755544311 1124667777777754 3333 3455555544 47999999999976 566
Q ss_pred HHHHHHHHHH
Q 015543 153 EKLEALLAAV 162 (405)
Q Consensus 153 ~~L~~f~~~v 162 (405)
..|+.|-+..
T Consensus 157 ~~L~~ld~~~ 166 (199)
T cd01457 157 AFLKALDDQL 166 (199)
T ss_pred HHHHHHhHHH
Confidence 7788887654
No 46
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=99.19 E-value=8.7e-10 Score=117.48 Aligned_cols=147 Identities=13% Similarity=0.104 Sum_probs=113.2
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCH----HHHHHhhcc--
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDL----GKILACMHE-- 78 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~----~kils~L~~-- 78 (405)
.++|+||.|.||. .++++...+..+..|+..+.-+.=...|||++|++. +.++++++... ..++..|..
T Consensus 44 DIvFLLD~SgSMg----~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~-~r~vfpL~s~~s~Dk~~aL~~I~sL~ 118 (576)
T PTZ00441 44 DLYLLVDGSGSIG----YHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNN-TTELIRLGSGASKDKEQALIIVKSLR 118 (576)
T ss_pred eEEEEEeCCCccC----CccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCC-ceEEEecCCCccccHHHHHHHHHHHH
Confidence 4799999999996 357788888899999998766666778888999887 68888887543 456666654
Q ss_pred --cccCCcccHHHHHHHHHHHhcccCC-CCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 015543 79 --LDIGGEMNIAAGIQVAQLALKHRQN-KNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKL 155 (405)
Q Consensus 79 --l~~~G~~sL~~gL~iA~lALKhr~~-k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L 155 (405)
+.++|.+++..||..|...|+++.+ .+..+.||||+++..+ +..+....+++|++.+|.|.+|++|... +...|
T Consensus 119 ~~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sn-s~~dvleaAq~LR~~GVeI~vIGVG~g~--n~e~L 195 (576)
T PTZ00441 119 KTYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPN-SKYRALEESRKLKDRNVKLAVIGIGQGI--NHQFN 195 (576)
T ss_pred hhccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCC-CcccHHHHHHHHHHCCCEEEEEEeCCCc--CHHHH
Confidence 3578999999999999988886532 3455778888777743 3356778889999999999999999855 45566
Q ss_pred HHHH
Q 015543 156 EALL 159 (405)
Q Consensus 156 ~~f~ 159 (405)
+.++
T Consensus 196 rlIA 199 (576)
T PTZ00441 196 RLLA 199 (576)
T ss_pred HHHh
Confidence 6554
No 47
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=99.10 E-value=3.5e-09 Score=103.11 Aligned_cols=151 Identities=16% Similarity=0.242 Sum_probs=128.5
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGE 84 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~~G~ 84 (405)
=+||+||-|.||+ ...|+.+.+-++..|++.=++ -.++|+||+|.|..++|+++||.+...+-..|..+.++|.
T Consensus 80 lvvfvVDASgSM~----~~~Rm~aaKG~~~~lL~dAYq--~RdkvavI~F~G~~A~lll~pT~sv~~~~~~L~~l~~GG~ 153 (261)
T COG1240 80 LIVFVVDASGSMA----ARRRMAAAKGAALSLLRDAYQ--RRDKVAVIAFRGEKAELLLPPTSSVELAERALERLPTGGK 153 (261)
T ss_pred cEEEEEeCcccch----hHHHHHHHHHHHHHHHHHHHH--ccceEEEEEecCCcceEEeCCcccHHHHHHHHHhCCCCCC
Confidence 3799999999998 456999999999998887444 3578999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcccC--CCCCCeEEEEEecCCCCC----C-hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHH
Q 015543 85 MNIAAGIQVAQLALKHRQ--NKNQRQRIIVFAGSPVKY----D-RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEA 157 (405)
Q Consensus 85 ~sL~~gL~iA~lALKhr~--~k~~~~RIVvFvgSpi~~----d-~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~ 157 (405)
+-|..||++|...+.... ++.....+||++++-.+. + ..+....+.++...++.+-||++-... .-..+.+.
T Consensus 154 TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~-~~~g~~~~ 232 (261)
T COG1240 154 TPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSE-VRLGLAEE 232 (261)
T ss_pred CchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCcc-ccccHHHH
Confidence 999999999999988643 456888889999887652 3 357788899999999999999998766 45567788
Q ss_pred HHHHH
Q 015543 158 LLAAV 162 (405)
Q Consensus 158 f~~~v 162 (405)
++...
T Consensus 233 iA~~~ 237 (261)
T COG1240 233 IARAS 237 (261)
T ss_pred HHHHh
Confidence 88765
No 48
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=99.04 E-value=7.4e-09 Score=111.03 Aligned_cols=143 Identities=13% Similarity=0.177 Sum_probs=109.2
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCC-----CHHHHHHhhccc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT-----DLGKILACMHEL 79 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~-----D~~kils~L~~l 79 (405)
.++||||.|.||.. .++..++.++..++.. .+|...++||+|.+. +.++.+.+. +..+++..|..+
T Consensus 273 ~vvfvlD~SgSM~g-----~~i~~ak~al~~~l~~---L~~~d~~~ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~l 343 (596)
T TIGR03788 273 ELVFVIDTSGSMAG-----ESIEQAKSALLLALDQ---LRPGDRFNIIQFDSD-VTLLFPVPVPATAHNLARARQFVAGL 343 (596)
T ss_pred eEEEEEECCCCCCC-----ccHHHHHHHHHHHHHh---CCCCCEEEEEEECCc-ceEeccccccCCHHHHHHHHHHHhhC
Confidence 58999999999984 3577888888888875 789999999999877 577765432 345667788899
Q ss_pred ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 015543 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALL 159 (405)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~ 159 (405)
.++|+++|..+|+.|...+.. ..+...++||+|+++.. .++..+.+.++. +..+++|++||||... |...|+.++
T Consensus 344 ~a~GgT~l~~aL~~a~~~~~~-~~~~~~~~iillTDG~~-~~~~~~~~~~~~-~~~~~ri~tvGiG~~~--n~~lL~~lA 418 (596)
T TIGR03788 344 QADGGTEMAGALSAALRDDGP-ESSGALRQVVFLTDGAV-GNEDALFQLIRT-KLGDSRLFTVGIGSAP--NSYFMRKAA 418 (596)
T ss_pred CCCCCccHHHHHHHHHHhhcc-cCCCceeEEEEEeCCCC-CCHHHHHHHHHH-hcCCceEEEEEeCCCc--CHHHHHHHH
Confidence 999999999999998765433 22345678999998874 345666666543 3457999999999865 568899888
Q ss_pred HH
Q 015543 160 AA 161 (405)
Q Consensus 160 ~~ 161 (405)
+.
T Consensus 419 ~~ 420 (596)
T TIGR03788 419 QF 420 (596)
T ss_pred Hc
Confidence 74
No 49
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.84 E-value=1.6e-07 Score=93.01 Aligned_cols=175 Identities=16% Similarity=0.180 Sum_probs=121.6
Q ss_pred eEEEEEeCChhhc---CCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCC---------CH---
Q 015543 5 ATMICIDNSEWMR---NGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT---------DL--- 69 (405)
Q Consensus 5 a~~IvIDnSesMr---ngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~---------D~--- 69 (405)
-.+|+||.+..-- ..+=.+.-|....+++-.|+++++-.|..|+|.||+....++..|-|-+. +.
T Consensus 4 lL~vvlD~np~~W~~~~~~~~~~~l~~~l~sllvF~NahL~l~~~N~vaVIAs~~~~~~~LYps~~~~~~~~~~~~~~~~ 83 (279)
T TIGR00627 4 LLVVIIEANPCSWGMLALAHGKRTISKVLRAIVVFLNAHLAFNANNKLAVIASHSQDNKYLYPSTRCEDRNASELDPKRL 83 (279)
T ss_pred EEEEEEeCCHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCccCCEEEEEecCCcceEEecCCccccccccccccccc
Confidence 3689999987542 21212557778889999999999999999999999998877777765321 10
Q ss_pred ------------HHHHHhhccc----cc----CCcccHHHHHHHHHHHhcccC-----CCCCCeEEEEEecCCCCC-Chh
Q 015543 70 ------------GKILACMHEL----DI----GGEMNIAAGIQVAQLALKHRQ-----NKNQRQRIIVFAGSPVKY-DRK 123 (405)
Q Consensus 70 ------------~kils~L~~l----~~----~G~~sL~~gL~iA~lALKhr~-----~k~~~~RIVvFvgSpi~~-d~~ 123 (405)
..++..|..+ .. .+++.|..||.+|+-.+..+. ....+.||+||.+|+... .-.
T Consensus 84 ~~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~~~~~qYi 163 (279)
T TIGR00627 84 RELLYRDFRTVDETIVEEIKPLMAHADKHMKKDSRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITPDMALQYI 163 (279)
T ss_pred cchhccchhHHHHHHHHHHHHHHhhchhcccccccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCCCchHHHH
Confidence 0134444322 11 156678889998866553321 235689999999998543 334
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCCchhhhhhhc
Q 015543 124 VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVLIS 186 (405)
Q Consensus 124 ~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~~lLsD~l~s 186 (405)
.+..++..++|.||+||+|+++.+. ...+|+++++.|+| -|.+++...+ |.+.|+.
T Consensus 164 ~~mn~Ifaaqk~~I~Idv~~L~~e~--~~~~lqQa~~~TgG----~Y~~~~~~~~-L~q~L~~ 219 (279)
T TIGR00627 164 PLMNCIFSAQKQNIPIDVVSIGGDF--TSGFLQQAADITGG----SYLHVKKPQG-LLQYLMT 219 (279)
T ss_pred HHHHHHHHHHHcCceEEEEEeCCcc--ccHHHHHHHHHhCC----EEeccCCHhH-HHHHHHH
Confidence 6779999999999999999999761 13599999999965 3444444434 5566644
No 50
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=98.65 E-value=6.2e-07 Score=83.99 Aligned_cols=140 Identities=24% Similarity=0.321 Sum_probs=95.5
Q ss_pred eEEEEEeCChhhcCCCCCC-cHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCC------------CceEEECCCCCHHH
Q 015543 5 ATMICIDNSEWMRNGDYSP-SRLRAQADAVSLICGAKTQSNPENTVGILTMGGK------------GVRVLTTPTTDLGK 71 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~P-tRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~------------~~~vLvtlT~D~~k 71 (405)
||++|||.|.+|-...-.. .+|..+.+++..++..|.-.+|...||||.++-. ...++.+++.---+
T Consensus 1 ~~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~l~~~~~~ 80 (224)
T PF03731_consen 1 ATVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQPLDPPSAE 80 (224)
T ss_dssp EEEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEECC--BHH
T ss_pred CEEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeecCCccCHH
Confidence 6999999999997433221 1899999999999999999999999999999732 23456666654445
Q ss_pred HHHhhccc-cc----------CCcccHHHHHHHHHHHhcc--cCCCCCCeEEEEEecCCCCC-ChhHHHHHHHH-----H
Q 015543 72 ILACMHEL-DI----------GGEMNIAAGIQVAQLALKH--RQNKNQRQRIIVFAGSPVKY-DRKVMEMIGKK-----L 132 (405)
Q Consensus 72 ils~L~~l-~~----------~G~~sL~~gL~iA~lALKh--r~~k~~~~RIVvFvgSpi~~-d~~~l~~~akk-----L 132 (405)
.+..|..+ .. ....+|..+|.+|...|++ ...+...+|||+|....... +..++..++++ |
T Consensus 81 ~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~~~~~~~~~~~~~l~~~Dl 160 (224)
T PF03731_consen 81 RLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPHEDDDELERIIQKLKAKDL 160 (224)
T ss_dssp HHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCHHHHHHHHHhhccccc
Confidence 55555543 32 4568999999999999986 44566789999998444333 55555555555 9
Q ss_pred HhCCceEEEEEe
Q 015543 133 KKNSVAIDIVNF 144 (405)
Q Consensus 133 KknnI~VdII~F 144 (405)
+.++|.+.++.+
T Consensus 161 ~~~~i~~~~~~l 172 (224)
T PF03731_consen 161 QDNGIEIELFFL 172 (224)
T ss_dssp HHHTEEEEEEEC
T ss_pred hhcCcceeEeec
Confidence 999999999999
No 51
>PRK10997 yieM hypothetical protein; Provisional
Probab=98.43 E-value=6.2e-06 Score=87.28 Aligned_cols=151 Identities=14% Similarity=0.179 Sum_probs=100.8
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGE 84 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~~G~ 84 (405)
-++||||.|.||. | + |..+..+.-++-.++. ......|||+.|.+.....-.++......++..|... .+|+
T Consensus 325 piII~VDtSGSM~-G-~-ke~~AkalAaAL~~iA----l~q~dr~~li~Fs~~i~~~~l~~~~gl~~ll~fL~~~-f~GG 396 (487)
T PRK10997 325 PFIVCVDTSGSMG-G-F-NEQCAKAFCLALMRIA----LAENRRCYIMLFSTEVVTYELTGPDGLEQAIRFLSQS-FRGG 396 (487)
T ss_pred cEEEEEECCCCCC-C-C-HHHHHHHHHHHHHHHH----HhcCCCEEEEEecCCceeeccCCccCHHHHHHHHHHh-cCCC
Confidence 3799999999996 3 2 4333333222222222 5567789999999875433244555678888888765 5899
Q ss_pred ccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHh-CCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 85 MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKK-NSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKk-nnI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
++|..+|..+...++.+ ...+.-|||+++.-...-+.++++..+.||+ .+.+++.|.+|... |..++ .+++
T Consensus 397 TDl~~aL~~al~~l~~~--~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~~--~p~l~-~ifD--- 468 (487)
T PRK10997 397 TDLAPCLRAIIEKMQGR--EWFDADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAHG--KPGIM-RIFD--- 468 (487)
T ss_pred CcHHHHHHHHHHHHccc--ccCCceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCCC--CchHH-HhcC---
Confidence 99999999998888752 2233344444444322336789999999988 89999999999644 44454 4444
Q ss_pred CCCCcEEEEecCC
Q 015543 164 NNDSSHLVHVPTG 176 (405)
Q Consensus 164 ~~d~Shlv~vp~g 176 (405)
|+....+|
T Consensus 469 -----~~W~~d~~ 476 (487)
T PRK10997 469 -----HIWRFDTG 476 (487)
T ss_pred -----eeeEecCC
Confidence 55555555
No 52
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=98.39 E-value=7.9e-06 Score=88.22 Aligned_cols=143 Identities=13% Similarity=0.222 Sum_probs=106.0
Q ss_pred cceEEEEEeCChhhcCCCC---CCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCC---------CceEEECCCCCHH
Q 015543 3 LEATMICIDNSEWMRNGDY---SPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGK---------GVRVLTTPTTDLG 70 (405)
Q Consensus 3 lEa~~IvIDnSesMrngD~---~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~---------~~~vLvtlT~D~~ 70 (405)
-|++++|||.|.+|-...- ..++|.....++..++..+.=.+|...||||-++-+ .+.|+.++..--.
T Consensus 10 keailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~L~~p~a 89 (584)
T TIGR00578 10 RDSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGA 89 (584)
T ss_pred eeEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEeeCCCCCH
Confidence 4899999999999986321 258999999999999999999999999999999743 2345666654444
Q ss_pred HHHHhhccccc------------CCc-ccHHHHHHHHHHHhcccCCCCCCeEEEEEecC--CCCCC--hhH-HHHHHHHH
Q 015543 71 KILACMHELDI------------GGE-MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGS--PVKYD--RKV-MEMIGKKL 132 (405)
Q Consensus 71 kils~L~~l~~------------~G~-~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgS--pi~~d--~~~-l~~~akkL 132 (405)
+.+..|..+.. .++ .+|.++|-+|...|.....+...+||++|+.- |...+ ... ....|+.|
T Consensus 90 ~~i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D~P~~~~~~~~~~a~~~a~dl 169 (584)
T TIGR00578 90 KRILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDL 169 (584)
T ss_pred HHHHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCCCCCCCchhHHHHHHHHHHHH
Confidence 44444444321 122 48999999999999875556678999999844 43322 112 25579999
Q ss_pred HhCCceEEEEEeC
Q 015543 133 KKNSVAIDIVNFG 145 (405)
Q Consensus 133 KknnI~VdII~FG 145 (405)
++.+|.+.++.+.
T Consensus 170 ~~~gi~ielf~l~ 182 (584)
T TIGR00578 170 RDTGIFLDLMHLK 182 (584)
T ss_pred HhcCeEEEEEecC
Confidence 9999999998654
No 53
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=98.29 E-value=1.3e-05 Score=77.35 Aligned_cols=149 Identities=18% Similarity=0.193 Sum_probs=100.9
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceE-----------------------
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRV----------------------- 61 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~v----------------------- 61 (405)
+.++|||.|..-.+.-+ ++..++++...+...=..+|...|||||+.... .+
T Consensus 5 ~~~FvIDvs~~a~~~g~----~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~v-~~y~l~~~~~~~q~~vv~dl~d~f~ 79 (244)
T cd01479 5 VYVFLIDVSYNAIKSGL----LATACEALLSNLDNLPGDDPRTRVGFITFDSTL-HFFNLKSSLEQPQMMVVSDLDDPFL 79 (244)
T ss_pred EEEEEEEccHHHHhhCh----HHHHHHHHHHHHHhcCCCCCCeEEEEEEECCeE-EEEECCCCCCCCeEEEeeCcccccC
Confidence 57899999976543111 456677777777753222377999999998642 22
Q ss_pred ------EECCCCCHHHHHHhhccc------ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChh------
Q 015543 62 ------LTTPTTDLGKILACMHEL------DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRK------ 123 (405)
Q Consensus 62 ------LvtlT~D~~kils~L~~l------~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~------ 123 (405)
++++......|...|++| .-.....++.||++|..+|++ ..-||++|++|+-+..++
T Consensus 80 P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~-----~GGkIi~f~s~~pt~GpG~l~~~~ 154 (244)
T cd01479 80 PLPDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKE-----TGGKIIVFQSSLPTLGAGKLKSRE 154 (244)
T ss_pred CCCcceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHh-----cCCEEEEEeCCCCCcCCcccccCc
Confidence 111122233444455554 112468899999999999996 456999999887542222
Q ss_pred -------------------HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 015543 124 -------------------VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (405)
Q Consensus 124 -------------------~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~ 164 (405)
--.+++.++.+++|.||+..++..- -...-+..+++.++|
T Consensus 155 ~~~~~~~~~e~~~~~p~~~fY~~la~~~~~~~isvDlF~~~~~~-~dla~l~~l~~~TGG 213 (244)
T cd01479 155 DPKLLSTDKEKQLLQPQTDFYKKLALECVKSQISVDLFLFSNQY-VDVATLGCLSRLTGG 213 (244)
T ss_pred cccccCchhhhhhcCcchHHHHHHHHHHHHcCeEEEEEEccCcc-cChhhhhhhhhhcCc
Confidence 2236899999999999999998765 566778899887753
No 54
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=98.27 E-value=3.7e-05 Score=73.55 Aligned_cols=150 Identities=21% Similarity=0.216 Sum_probs=104.7
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEE---------------------
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLT--------------------- 63 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLv--------------------- 63 (405)
+.++|||.|....+. .-++..++++...+... ..++...||||||... ..+.-
T Consensus 5 ~~vFvID~s~~ai~~----~~l~~~~~sl~~~l~~l-p~~~~~~igiITf~~~-V~~~~~~~~~~~~~~~v~~dl~d~f~ 78 (239)
T cd01468 5 VFVFVIDVSYEAIKE----GLLQALKESLLASLDLL-PGDPRARVGLITYDST-VHFYNLSSDLAQPKMYVVSDLKDVFL 78 (239)
T ss_pred EEEEEEEcchHhccc----cHHHHHHHHHHHHHHhC-CCCCCcEEEEEEeCCe-EEEEECCCCCCCCeEEEeCCCccCcC
Confidence 579999999876543 34677888888888752 1248889999999643 33321
Q ss_pred C--------CCCCHHHHHHhhccccc--------CCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChh----
Q 015543 64 T--------PTTDLGKILACMHELDI--------GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRK---- 123 (405)
Q Consensus 64 t--------lT~D~~kils~L~~l~~--------~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~---- 123 (405)
+ +......|.+.|+++.. .....++.||++|...|+++- ..-||++|++++-+..++
T Consensus 79 p~~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~---~gGkI~~f~sg~pt~GpG~l~~ 155 (239)
T cd01468 79 PLPDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTF---AGGRIIVFQGGLPTVGPGKLKS 155 (239)
T ss_pred CCcCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcC---CCceEEEEECCCCCCCCCcccc
Confidence 1 11111334444554421 235889999999999999852 578999999888753222
Q ss_pred ---------------------HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 015543 124 ---------------------VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (405)
Q Consensus 124 ---------------------~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~ 164 (405)
--.+++.++.+++|.||+..++... -...-+..++..++|
T Consensus 156 ~~~~~~~~~~~e~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~-~dl~~l~~l~~~TGG 216 (239)
T cd01468 156 REDKEPIRSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDY-VDVATLKQLAKSTGG 216 (239)
T ss_pred CcccccCCCccchhcccccHHHHHHHHHHHHHcCeEEEEEeccccc-cCHHHhhhhhhcCCc
Confidence 2256899999999999999999875 566778888886643
No 55
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=98.26 E-value=4.2e-05 Score=72.66 Aligned_cols=171 Identities=15% Similarity=0.187 Sum_probs=120.3
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCC-CHHHHHHhhcc----c
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT-DLGKILACMHE----L 79 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~-D~~kils~L~~----l 79 (405)
.++||||.|.||+ +=|+--+.+...+=+--+.. +..+..+|=+..|+.+ +..+-++|- |+...+..+|. +
T Consensus 3 rV~LVLD~SGSM~-~~yk~G~vQ~~~Er~lalA~---~~DdDG~i~v~~Fs~~-~~~~~~vt~~~~~~~v~~~~~~~~~~ 77 (200)
T PF10138_consen 3 RVYLVLDISGSMR-PLYKDGTVQRVVERILALAA---QFDDDGEIDVWFFSTE-FDRLPDVTLDNYEGYVDELHAGLPDW 77 (200)
T ss_pred EEEEEEeCCCCCc-hhhhCccHHHHHHHHHHHHh---hcCCCCceEEEEeCCC-CCcCCCcCHHHHHHHHHHHhcccccc
Confidence 4789999999998 45555566655444433333 2556678889999877 566666663 45555555543 3
Q ss_pred ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 015543 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALL 159 (405)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~ 159 (405)
..-|.++..-.|+-+......+.....+.-||++.++.. .+...+.+++....+..|....||||...+ .+|++|-
T Consensus 78 ~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~-~~~~~~~~~i~~as~~pifwqFVgiG~~~f---~fL~kLD 153 (200)
T PF10138_consen 78 GRMGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGP-DDRRAIEKLIREASDEPIFWQFVGIGDSNF---GFLEKLD 153 (200)
T ss_pred CCCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCc-cchHHHHHHHHhccCCCeeEEEEEecCCcc---hHHHHhh
Confidence 444779999999999887775544344555555556653 478889999999999999999999999775 7888886
Q ss_pred HHHcCC--CCcEEEEecCCC----chhhhhhh
Q 015543 160 AAVNNN--DSSHLVHVPTGP----NALSDVLI 185 (405)
Q Consensus 160 ~~vn~~--d~Shlv~vp~g~----~lLsD~l~ 185 (405)
+ +.+- ||..|+++..-+ .-|+|.|+
T Consensus 154 ~-l~gR~vDNa~Ff~~~d~~~lsD~eLy~~LL 184 (200)
T PF10138_consen 154 D-LAGRVVDNAGFFAIDDIDELSDEELYDRLL 184 (200)
T ss_pred c-cCCcccCCcCeEecCCcccCCHHHHHHHHH
Confidence 5 4332 788898887643 22566664
No 56
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=98.16 E-value=3.6e-05 Score=75.65 Aligned_cols=146 Identities=19% Similarity=0.221 Sum_probs=101.6
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEE---------------------
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLT--------------------- 63 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLv--------------------- 63 (405)
..++|||.|..- ..+++.++++...+.. ..+...|||||+... +.+.-
T Consensus 5 ~~vFviDvs~~~-------~el~~l~~sl~~~L~~---lP~~a~VGlITfd~~-V~~~~L~~~~~~~~~vf~g~~~~~~~ 73 (267)
T cd01478 5 VFLFVVDTCMDE-------EELDALKESLIMSLSL---LPPNALVGLITFGTM-VQVHELGFEECSKSYVFRGNKDYTAK 73 (267)
T ss_pred EEEEEEECccCH-------HHHHHHHHHHHHHHHh---CCCCCEEEEEEECCE-EEEEEcCCCcCceeeeccCCccCCHH
Confidence 468999999742 2377777877777765 667789999999854 33321
Q ss_pred -------------------------------------CCCCCHHHHHHhhccccc---------CCcccHHHHHHHHHHH
Q 015543 64 -------------------------------------TPTTDLGKILACMHELDI---------GGEMNIAAGIQVAQLA 97 (405)
Q Consensus 64 -------------------------------------tlT~D~~kils~L~~l~~---------~G~~sL~~gL~iA~lA 97 (405)
++......|.+.|+.|.. .....++.||++|..+
T Consensus 74 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~l 153 (267)
T cd01478 74 QIQDMLGLGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGL 153 (267)
T ss_pred HHHHHhccccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHH
Confidence 111112234444555532 1357899999999999
Q ss_pred hcccCCCCCCeEEEEEecCCCCCChhHH------------------------------HHHHHHHHhCCceEEEEEeCCC
Q 015543 98 LKHRQNKNQRQRIIVFAGSPVKYDRKVM------------------------------EMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 98 LKhr~~k~~~~RIVvFvgSpi~~d~~~l------------------------------~~~akkLKknnI~VdII~FG~e 147 (405)
|++. .++..-||++|+++|-+..++.+ .++++++.+++|.||+..++..
T Consensus 154 l~~~-~~~~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~~~~vsvDlF~~s~d 232 (267)
T cd01478 154 LEAC-FPNTGARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAANGHAVDIFAGCLD 232 (267)
T ss_pred HHhh-cCCCCcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEEecccc
Confidence 9964 34578899999999875322211 2478888999999999999986
Q ss_pred CCCcHHHHHHHHHHHc
Q 015543 148 DDGKPEKLEALLAAVN 163 (405)
Q Consensus 148 ~~~n~~~L~~f~~~vn 163 (405)
- --..-+..+++.+.
T Consensus 233 ~-vglaem~~l~~~TG 247 (267)
T cd01478 233 Q-VGLLEMKVLVNSTG 247 (267)
T ss_pred c-cCHHHHHHHHHhcC
Confidence 5 56677888888664
No 57
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=98.10 E-value=0.0002 Score=70.99 Aligned_cols=172 Identities=17% Similarity=0.183 Sum_probs=119.2
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCC--------C--------
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT--------D-------- 68 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~--------D-------- 68 (405)
-.+|+||.+..--..=-.+..|....+++-.|+++++-.|..|+|.||+....+.+.|-|... +
T Consensus 3 LLvIILD~nP~~W~~~~~~~~l~~~l~~llvFlNahL~l~~~N~vaVIAs~~~~s~~LYP~~~~~~~~~~~~~~~~~~~~ 82 (276)
T PF03850_consen 3 LLVIILDTNPLAWGQLSDQLSLSQFLDSLLVFLNAHLALNHSNQVAVIASHSNSSKFLYPSPSSSESSNSGDVEMNSSDS 82 (276)
T ss_pred EEEEEEECCHHHHhhccccccHHHHHHHHHHHHHHHHhhCccCCEEEEEEcCCccEEEeCCCccccccCCCccccccccc
Confidence 368999998654322112277888899999999999999999999999999888888766444 0
Q ss_pred ---------HHHHHHhhccc----c----cCCcccHHHHHHHHHHHhcccCC------CCCCeEEEE-EecCCCCC-Chh
Q 015543 69 ---------LGKILACMHEL----D----IGGEMNIAAGIQVAQLALKHRQN------KNQRQRIIV-FAGSPVKY-DRK 123 (405)
Q Consensus 69 ---------~~kils~L~~l----~----~~G~~sL~~gL~iA~lALKhr~~------k~~~~RIVv-FvgSpi~~-d~~ 123 (405)
-..+++.|+.+ . ....+.|..||.+|+-.+..+.. ...+.||+| +.+|+... .=-
T Consensus 83 ~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~d~~~QYi 162 (276)
T PF03850_consen 83 NKYRQFRNVDETVLEELKKLMSETSESSDSTTSSLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSPDSSSQYI 162 (276)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCCCccHHHH
Confidence 12233444433 1 11127888999998766654321 356789999 67777543 233
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCCchhhhhh
Q 015543 124 VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVL 184 (405)
Q Consensus 124 ~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~~lLsD~l 184 (405)
.+...+-.+.|.+|.||++.+|.. ...+|++.++.|+| -|+.++.... |.-.|
T Consensus 163 ~~MN~iFaAqk~~v~IDv~~L~~~---~s~fLqQa~d~T~G----~y~~~~~~~~-l~q~L 215 (276)
T PF03850_consen 163 PLMNCIFAAQKQKVPIDVCKLGGK---DSTFLQQASDITGG----IYLKVSKPEG-LLQYL 215 (276)
T ss_pred HHHHHHHHHhcCCceeEEEEecCC---chHHHHHHHHHhCc----eeeccCcccc-HHHHH
Confidence 566788889999999999999982 24699999998864 4555554333 33444
No 58
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=98.03 E-value=7.6e-05 Score=71.30 Aligned_cols=149 Identities=17% Similarity=0.231 Sum_probs=99.0
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEE----------------------
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVL---------------------- 62 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vL---------------------- 62 (405)
+.++|||.|....+ ...+++.++++...++.. ..++...||||||... ..+.
T Consensus 5 ~y~FvID~s~~av~----~g~~~~~~~sl~~~l~~l-~~~~~~~vgiitfd~~-V~~y~l~~~~~~~~~~v~~dl~~~~~ 78 (243)
T PF04811_consen 5 VYVFVIDVSYEAVQ----SGLLQSLIESLKSALDSL-PGDERTRVGIITFDSS-VHFYNLSSSLSQPQMIVVSDLDDPFI 78 (243)
T ss_dssp EEEEEEE-SHHHHH----HTHHHHHHHHHHHHGCTS-STSTT-EEEEEEESSS-EEEEETTTTSSSTEEEEEHHTTSHHS
T ss_pred EEEEEEECchhhhh----ccHHHHHHHHHHHHHHhc-cCCCCcEEEEEEeCCE-EEEEECCCCcCCCcccchHHHhhccc
Confidence 56899999965322 346788888888888653 2559999999999754 3333
Q ss_pred -------ECCCCCHHHHHHhhcccc--------cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChh----
Q 015543 63 -------TTPTTDLGKILACMHELD--------IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRK---- 123 (405)
Q Consensus 63 -------vtlT~D~~kils~L~~l~--------~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~---- 123 (405)
+++......|...|+.+. ......++.||++|...|+.+. ..-||++|.+|+-+..++
T Consensus 79 p~~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~---~gGkI~~F~s~~pt~G~Gg~l~ 155 (243)
T PF04811_consen 79 PLPDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRN---TGGKILVFTSGPPTYGPGGSLK 155 (243)
T ss_dssp STSSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHT---S-EEEEEEESS---SSSTTSS-
T ss_pred CCcccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccc---cCCEEEEEeccCCCCCCCceec
Confidence 222233344544444441 2346889999999999999532 678999999887543331
Q ss_pred -----------------------HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 124 -----------------------VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 124 -----------------------~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
-..++++++.+.+|.||+..++... -...-|..++..++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~-~~l~tl~~l~~~TG 217 (243)
T PF04811_consen 156 KREDSSHYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSDY-VDLATLGPLARYTG 217 (243)
T ss_dssp SBTTSCCCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS---SHHHHTHHHHCTT
T ss_pred ccccccccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCCC-CCcHhHHHHHHhCc
Confidence 3478999999999999999999876 67888999988664
No 59
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=97.92 E-value=0.00023 Score=67.24 Aligned_cols=144 Identities=16% Similarity=0.249 Sum_probs=95.4
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcC----CcEEEEEecCCCceEEECCCCCHHHHHHh-hccc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPE----NTVGILTMGGKGVRVLTTPTTDLGKILAC-MHEL 79 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPe----s~VGlvtmag~~~~vLvtlT~D~~kils~-L~~l 79 (405)
-|+++||+|.||+- .|+++....+..++... .++|. ..++||||+|. +++.+++|. +.+. ...+
T Consensus 5 P~~lllDtSgSM~G-----e~IealN~Glq~m~~~L-kqdp~Ale~v~lsIVTF~~~-a~~~~pf~~----~~nF~~p~L 73 (207)
T COG4245 5 PCYLLLDTSGSMIG-----EPIEALNAGLQMMIDTL-KQDPYALERVELSIVTFGGP-ARVIQPFTD----AANFNPPIL 73 (207)
T ss_pred CEEEEEecCccccc-----ccHHHHHHHHHHHHHHH-HhChhhhheeEEEEEEecCc-ceEEechhh----HhhcCCCce
Confidence 48999999999975 68999999999998874 46664 57899999985 799998874 1211 2234
Q ss_pred ccCCcccHHHHHHHHHHHhcccCC-------CCCCeEEEEEe-cCCCCCChhHHHHHHHHHHh--CCceEEEEEeCCCCC
Q 015543 80 DIGGEMNIAAGIQVAQLALKHRQN-------KNQRQRIIVFA-GSPVKYDRKVMEMIGKKLKK--NSVAIDIVNFGEDDD 149 (405)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~-------k~~~~RIVvFv-gSpi~~d~~~l~~~akkLKk--nnI~VdII~FG~e~~ 149 (405)
...|++.++.||+.|......|-. ..++--++++. |.| +. +--..++...-+ .+.+|-.++||...
T Consensus 74 ~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~P-tD--~w~~~~~~~~~~~~~~k~v~a~~~G~~~- 149 (207)
T COG4245 74 TAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEP-TD--DWQAGAALVFQGERRAKSVAAFSVGVQG- 149 (207)
T ss_pred ecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCc-ch--HHHhHHHHhhhcccccceEEEEEecccc-
Confidence 668999999999999888876521 22333334443 444 21 111222222222 23456666777764
Q ss_pred CcHHHHHHHHHHHc
Q 015543 150 GKPEKLEALLAAVN 163 (405)
Q Consensus 150 ~n~~~L~~f~~~vn 163 (405)
.+.+.|+++.++|-
T Consensus 150 ad~~~L~qit~~V~ 163 (207)
T COG4245 150 ADNKTLNQITEKVR 163 (207)
T ss_pred cccHHHHHHHHhhc
Confidence 45678999887663
No 60
>PLN00162 transport protein sec23; Provisional
Probab=97.69 E-value=0.00048 Score=76.75 Aligned_cols=147 Identities=18% Similarity=0.208 Sum_probs=98.7
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEE---------------------
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLT--------------------- 63 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLv--------------------- 63 (405)
+.++|||.|-.- ..++.-++++...+.. ..+...|||||++.. +.+.-
T Consensus 126 ~fvFvID~s~~~-------~~l~~lk~sl~~~L~~---LP~~a~VGlITF~s~-V~~~~L~~~~~~~~~Vf~g~k~~t~~ 194 (761)
T PLN00162 126 VFVFVVDTCMIE-------EELGALKSALLQAIAL---LPENALVGLITFGTH-VHVHELGFSECSKSYVFRGNKEVSKD 194 (761)
T ss_pred EEEEEEecchhH-------HHHHHHHHHHHHHHHh---CCCCCEEEEEEECCE-EEEEEcCCCCCcceEEecCCccCCHH
Confidence 578999999432 3477777777777765 667889999999854 23321
Q ss_pred -------------------------------------CCCCCHHHHHHhhccccc------CC---cccHHHHHHHHHHH
Q 015543 64 -------------------------------------TPTTDLGKILACMHELDI------GG---EMNIAAGIQVAQLA 97 (405)
Q Consensus 64 -------------------------------------tlT~D~~kils~L~~l~~------~G---~~sL~~gL~iA~lA 97 (405)
++..-...|-+.|..|.. .| ...++.||++|...
T Consensus 195 ~l~~~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~l 274 (761)
T PLN00162 195 QILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGL 274 (761)
T ss_pred HHHHHhccccccccccccccccccccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHH
Confidence 000000112222333321 22 47799999999999
Q ss_pred hcccCCCCCCeEEEEEecCCCCCChhHH------------------------------HHHHHHHHhCCceEEEEEeCCC
Q 015543 98 LKHRQNKNQRQRIIVFAGSPVKYDRKVM------------------------------EMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 98 LKhr~~k~~~~RIVvFvgSpi~~d~~~l------------------------------~~~akkLKknnI~VdII~FG~e 147 (405)
|+.. .++...||++|++||-+..++.+ .++++++.+++|.||+..++..
T Consensus 275 L~~~-~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~~s~d 353 (761)
T PLN00162 275 LGAC-VPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLD 353 (761)
T ss_pred Hhhc-cCCCceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcchHHHHHHHHHHHHHHcCceEEEEEcccc
Confidence 9864 34678999999999864322211 3488899999999999999986
Q ss_pred CCCcHHHHHHHHHHHcC
Q 015543 148 DDGKPEKLEALLAAVNN 164 (405)
Q Consensus 148 ~~~n~~~L~~f~~~vn~ 164 (405)
- --..-++.+++.+.|
T Consensus 354 q-vglaem~~l~~~TGG 369 (761)
T PLN00162 354 Q-VGVAEMKVAVERTGG 369 (761)
T ss_pred c-cCHHHHhhhHhhcCc
Confidence 5 456677888876643
No 61
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=97.51 E-value=0.0019 Score=61.48 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=86.4
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCC--CCHHHHHHhhcc--cc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--TDLGKILACMHE--LD 80 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT--~D~~kils~L~~--l~ 80 (405)
-++||+|.|.||.. | ++| +-.|+...+.+.+ .|.++.|.... ..++.+- .++...+..+.. ..
T Consensus 59 ~lvvl~DvSGSM~~--~--s~~------~l~~~~~l~~~~~--~~~~f~F~~~l-~~vT~~l~~~~~~~~l~~~~~~~~~ 125 (222)
T PF05762_consen 59 RLVVLCDVSGSMAG--Y--SEF------MLAFLYALQRQFR--RVRVFVFSTRL-TEVTPLLRRRDPEEALARLSALVQS 125 (222)
T ss_pred cEEEEEeCCCChHH--H--HHH------HHHHHHHHHHhCC--CEEEEEEeeeh-hhhhhhhccCCHHHHHHHHHhhccC
Confidence 48999999999963 2 222 3335555555555 89999998763 4444332 366666666652 24
Q ss_pred cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015543 81 IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (405)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~ 143 (405)
.+|++++..+|..+...+.. ....+.-+||++++--+.++..+....++|+....+|..++
T Consensus 126 ~~GgTdi~~aL~~~~~~~~~--~~~~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLn 186 (222)
T PF05762_consen 126 FGGGTDIGQALREFLRQYAR--PDLRRTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLN 186 (222)
T ss_pred CCCccHHHHHHHHHHHHhhc--ccccCcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEEC
Confidence 78999999999999877753 11256677777787556678888899999999998766654
No 62
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=97.48 E-value=0.0012 Score=65.38 Aligned_cols=169 Identities=20% Similarity=0.193 Sum_probs=107.0
Q ss_pred eEEEEEeCCh------hhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEEC--------------
Q 015543 5 ATMICIDNSE------WMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTT-------------- 64 (405)
Q Consensus 5 a~~IvIDnSe------sMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvt-------------- 64 (405)
-.+++||.+. +...+++ +.+ -..+|+-.|+++++-+|-.|+|.|++-.....+-|.+
T Consensus 25 lL~vlId~~p~~Wg~~as~~~~~-ti~--kvl~aivVFlNAHL~~~~~NrvaViA~~~q~~~~lyp~st~~e~~n~~~~~ 101 (314)
T KOG2487|consen 25 LLVVLIDANPCSWGMLASAENWE-TIS--KVLNAIVVFLNAHLAFSRNNRVAVIASHSQVDNYLYPSSTRCEDRNASELD 101 (314)
T ss_pred eEEEEEecCcchhhhhhhhcCce-eHH--HHHHHHHHHHHHHHhhccCCcEEEEEecccccceeccccccCCccCccccC
Confidence 4678899887 2335555 444 3678999999999999999999999986555555555
Q ss_pred CCC-----------CHHHHHHhhccc----c--cCC-cccHHHHHHHHHHHhcccCCCC-----CCeEEEEEecCCCCC-
Q 015543 65 PTT-----------DLGKILACMHEL----D--IGG-EMNIAAGIQVAQLALKHRQNKN-----QRQRIIVFAGSPVKY- 120 (405)
Q Consensus 65 lT~-----------D~~kils~L~~l----~--~~G-~~sL~~gL~iA~lALKhr~~k~-----~~~RIVvFvgSpi~~- 120 (405)
||. .-..|++-|.++ . ..| .+-+.-++.-| |..-||-++. .+.||+||..++...
T Consensus 102 ~t~~~~~~y~~~~~~d~tiv~ei~~lm~~~~~~~~~~rt~lagals~~-L~yi~~~~ke~~~~~lkSRilV~t~t~d~~~ 180 (314)
T KOG2487|consen 102 PTRLVLFDYSEFRTVDDTIVEEIYRLMEHPDKYDVGDRTVLAGALSDA-LGYINRLHKEEASEKLKSRILVFTLTRDRAL 180 (314)
T ss_pred chhhhcchhhhhcccchHHHHHHHHHHhCccccccccceeeccchhhc-cchHhhhhhhhhhhhhhceEEEEEechHHHh
Confidence 331 112233333332 1 112 22222233222 2233333333 489999999877643
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCCchhhhhhhc
Q 015543 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVLIS 186 (405)
Q Consensus 121 d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~~lLsD~l~s 186 (405)
.-..+...+--+.|.||+||++++|... .+|++-++.|+| -|++++.-+.|| -.|+.
T Consensus 181 qyi~~MNciFaAqKq~I~Idv~~l~~~s----~~LqQa~D~TGG----~YL~v~~~~gLL-qyLlt 237 (314)
T KOG2487|consen 181 QYIPYMNCIFAAQKQNIPIDVVSLGGDS----GFLQQACDITGG----DYLHVEKPDGLL-QYLLT 237 (314)
T ss_pred hhhhHHHHHHHHHhcCceeEEEEecCCc----hHHHHHHhhcCC----eeEecCCcchHH-HHHHH
Confidence 3345667777888999999999999875 499999988853 366676443343 44443
No 63
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.47 E-value=0.0024 Score=67.10 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=97.3
Q ss_pred EEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEE-ECCCCCHHHHHHhhcccccCCc
Q 015543 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVL-TTPTTDLGKILACMHELDIGGE 84 (405)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vL-vtlT~D~~kils~L~~l~~~G~ 84 (405)
+++|||-|.||.- ++.++++..+-.++.--...|- .+.++.|.....++- .++..+..+++..|..+-.+|
T Consensus 275 villlD~SGSM~G-----~~e~~AKAvalAl~~~alaenR--~~~~~lF~s~~~~~el~~k~~~~~e~i~fL~~~f~GG- 346 (437)
T COG2425 275 VILLLDKSGSMSG-----FKEQWAKAVALALMRIALAENR--DCYVILFDSEVIEYELYEKKIDIEELIEFLSYVFGGG- 346 (437)
T ss_pred EEEEEeCCCCcCC-----cHHHHHHHHHHHHHHHHHHhcc--ceEEEEecccceeeeecCCccCHHHHHHHHhhhcCCC-
Confidence 7999999999964 4556666544444443223332 589999988544443 457779999999999998777
Q ss_pred ccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHH-HHHhCCceEEEEEeCCCC
Q 015543 85 MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGK-KLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~ak-kLKknnI~VdII~FG~e~ 148 (405)
|+|..+|..|+..+|.+.- ...-||+++++-..-. .++....+ ..|+.+.+|+.|.+|...
T Consensus 347 TD~~~~l~~al~~~k~~~~--~~adiv~ITDg~~~~~-~~~~~~v~e~~k~~~~rl~aV~I~~~~ 408 (437)
T COG2425 347 TDITKALRSALEDLKSREL--FKADIVVITDGEDERL-DDFLRKVKELKKRRNARLHAVLIGGYG 408 (437)
T ss_pred CChHHHHHHHHHHhhcccc--cCCCEEEEeccHhhhh-hHHHHHHHHHHHHhhceEEEEEecCCC
Confidence 9999999999999998543 4488999988875544 44454444 445899999999999855
No 64
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=97.26 E-value=0.026 Score=54.78 Aligned_cols=157 Identities=16% Similarity=0.293 Sum_probs=105.8
Q ss_pred cceEEEEEeCChhhcCCCCCCc-HHHHHHHHHHHHHHh------hccCCcCCcEEEEEecCCC--ceE---EECCCCCHH
Q 015543 3 LEATMICIDNSEWMRNGDYSPS-RLRAQADAVSLICGA------KTQSNPENTVGILTMGGKG--VRV---LTTPTTDLG 70 (405)
Q Consensus 3 lEa~~IvIDnSesMrngD~~Pt-Rl~Aq~dAv~~fv~~------k~~~NPes~VGlvtmag~~--~~v---LvtlT~D~~ 70 (405)
..-+|+|||-+-.| |=|-++ |=.--.-.++.|... +...+..+.+|||+++... +.- .+.+|.|+.
T Consensus 13 ~~~vVfvvEgTAal--gpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~~~~~v~~~g~T~~~~ 90 (226)
T PF11265_consen 13 QAQVVFVVEGTAAL--GPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCYPEPIVQRSGPTSSPQ 90 (226)
T ss_pred cceEEEEEecchhh--hhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCCcccceeccCCcCCHH
Confidence 34588999987654 444443 332333333333321 1124577889999998653 222 347999999
Q ss_pred HHHHhhcccccCCc-----ccHHHHHHHHHHHhcc----cCC---CCCCeEEEEEecCCCC---------CChhHHHHHH
Q 015543 71 KILACMHELDIGGE-----MNIAAGIQVAQLALKH----RQN---KNQRQRIIVFAGSPVK---------YDRKVMEMIG 129 (405)
Q Consensus 71 kils~L~~l~~~G~-----~sL~~gL~iA~lALKh----r~~---k~~~~RIVvFvgSpi~---------~d~~~l~~~a 129 (405)
++++.|++|+..|+ +++..||..|+..+.. |++ ....+..|++..||-. .......+++
T Consensus 91 ~fl~~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP~~~p~~~~~~~~~~~~d~la 170 (226)
T PF11265_consen 91 KFLQWLDAIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPPYRLPVNECPQYSGKTCDQLA 170 (226)
T ss_pred HHHHHHHccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCCccccccCCCcccCCCHHHHH
Confidence 99999999977442 4599999999998873 322 1234666777777652 1234678899
Q ss_pred HHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCC
Q 015543 130 KKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND 166 (405)
Q Consensus 130 kkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d 166 (405)
..+.+.||.++||+= .....|+.|.++.+++.
T Consensus 171 ~~~~~~~I~LSiisP-----rklP~l~~Lfeka~~~~ 202 (226)
T PF11265_consen 171 VLISERNISLSIISP-----RKLPSLRSLFEKAKGNP 202 (226)
T ss_pred HHHHhcCceEEEEcC-----ccCHHHHHHHHhcCCCc
Confidence 999999999999986 23468999999887654
No 65
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.85 E-value=0.017 Score=57.82 Aligned_cols=148 Identities=22% Similarity=0.321 Sum_probs=114.0
Q ss_pred cceEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCC--CCHHHHHHhhcc-c
Q 015543 3 LEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--TDLGKILACMHE-L 79 (405)
Q Consensus 3 lEa~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT--~D~~kils~L~~-l 79 (405)
.....+++|.|.||.-.. .+....++. .++. ..++...+.++++.+ .+.++.+++ .+...+..++.. +
T Consensus 37 ~~~~~~~~~~~~s~~~~~-~~~~~~~~~----~~v~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~ 107 (399)
T COG2304 37 PANLTLAIDTSGSMTGAL-LELAKSAAI----ELVN---GLNPGDLLSIVTFAG-SADVLIPPTGATNKESITAAIDQSL 107 (399)
T ss_pred CcceEEEeccCCCccchh-HHHHHHHHH----HHhc---ccCCCCceEEEEecC-CcceecCcccccCHHHHHHHHhhhh
Confidence 456788999999998766 555444433 3333 388999999999999 679999888 899999999998 7
Q ss_pred ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCC---ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHH
Q 015543 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY---DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLE 156 (405)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~---d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~ 156 (405)
...|.+.+..++..+..-+.+...+-...++.+..++..+. |...+...+++.-+.+|.++++|||... |...+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tdg~~~~~~~d~~~~~~~~~~~~~~~i~~~~~g~~~~~--n~~~~~ 185 (399)
T COG2304 108 QAGGATAVEASLSLAVELAAKALPRGTLNRILLLTDGENNLGLVDPSRLSALAKLAAGKGIVLDTLGLGDDV--NEDELT 185 (399)
T ss_pred ccccccHHHHHHHHHHHHhhhcCCccceeeEeeeccCccccCCCCHHHHHHHhcccccCceEEEEEeccccc--chhhhh
Confidence 88999999999998887776644556667777777766543 7788888888888889999999999975 444555
Q ss_pred HHHHH
Q 015543 157 ALLAA 161 (405)
Q Consensus 157 ~f~~~ 161 (405)
.+...
T Consensus 186 ~~~~~ 190 (399)
T COG2304 186 GIAAA 190 (399)
T ss_pred hhhhc
Confidence 44443
No 66
>PTZ00395 Sec24-related protein; Provisional
Probab=96.79 E-value=0.0092 Score=69.53 Aligned_cols=134 Identities=11% Similarity=0.101 Sum_probs=89.0
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCC------------------------c-
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG------------------------V- 59 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~------------------------~- 59 (405)
+.+||||+|......-+. .+..++++..+... ..|...|||||+-... +
T Consensus 954 ~YvFLIDVS~~AVkSGLl----~tacesIK~sLDsL--~dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qPQ 1027 (1560)
T PTZ00395 954 YFVFVVECSYNAIYNNIT----YTILEGIRYAVQNV--KCPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNHQ 1027 (1560)
T ss_pred EEEEEEECCHHHHhhChH----HHHHHHHHHHHhcC--CCCCcEEEEEEecCcEEEEecCcccccccccccccccCCCce
Confidence 689999999886554443 34455555555543 2578999999986432 1
Q ss_pred -----------------eEEECCCCCHHHHHHhhccc------ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 015543 60 -----------------RVLTTPTTDLGKILACMHEL------DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGS 116 (405)
Q Consensus 60 -----------------~vLvtlT~D~~kils~L~~l------~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgS 116 (405)
.+++.|...+..|...|..| ....++.|+.||+.|..+|+++. ..-||++|..+
T Consensus 1028 MLVVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~G---GGGKIiVF~SS 1104 (1560)
T PTZ00395 1028 VIVMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERN---GLGSICMFYTT 1104 (1560)
T ss_pred EEeecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcC---CCceEEEEEcC
Confidence 23334444444555555554 22346889999999999999853 25678888765
Q ss_pred CCCCChh--------------------HHHHHHHHHHhCCceEEEEEeCCC
Q 015543 117 PVKYDRK--------------------VMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 117 pi~~d~~--------------------~l~~~akkLKknnI~VdII~FG~e 147 (405)
.-+..++ --.+++..+.+.+|.||+.-|+..
T Consensus 1105 LPniGpGaLK~Re~~~KEk~Ll~pqd~FYK~LA~ECsk~qISVDLFLfSsq 1155 (1560)
T PTZ00395 1105 TPNCGIGAIKELKKDLQENFLEVKQKIFYDSLLLDLYAFNISVDIFIISSN 1155 (1560)
T ss_pred CCCCCCCcccccccccccccccccchHHHHHHHHHHHhcCCceEEEEccCc
Confidence 4432222 224689999999999999999863
No 67
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=96.54 E-value=0.15 Score=53.64 Aligned_cols=159 Identities=14% Similarity=0.169 Sum_probs=105.5
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCC---------------------------
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGK--------------------------- 57 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~--------------------------- 57 (405)
.+++++|+|.||.+ -++..+.....+..+.-.-....++|+=+|-+|
T Consensus 101 DLYyLMDlS~SM~d------dl~~lk~lg~~L~~~m~~it~n~rlGfGsFVDK~v~P~~~t~p~~l~~PC~~~~~~c~p~ 174 (423)
T smart00187 101 DLYYLMDLSYSMKD------DLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTRPEKLENPCPNYNLTCEPP 174 (423)
T ss_pred ceEEEEeCCccHHH------HHHHHHHHHHHHHHHHHhcccCceeeEEEeecCccCCcccCCHHHhcCCCcCCCCCcCCC
Confidence 36899999999985 456666677777777777778889999887765
Q ss_pred -CceEEECCCCCHHHHHHhhcccccCCcccHH----HHHHHHHHHhcccCCCCCCeEEEEEe-cCCCC------------
Q 015543 58 -GVRVLTTPTTDLGKILACMHELDIGGEMNIA----AGIQVAQLALKHRQNKNQRQRIIVFA-GSPVK------------ 119 (405)
Q Consensus 58 -~~~vLvtlT~D~~kils~L~~l~~~G~~sL~----~gL~iA~lALKhr~~k~~~~RIVvFv-gSpi~------------ 119 (405)
+.+=+.+||.|..++-+.+.+..+.|+.+.. .||..|..--++..-+....|||||+ +++..
T Consensus 175 f~f~~~L~LT~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv~~TDa~fH~AGDGkLaGIv~ 254 (423)
T smart00187 175 YGFKHVLSLTDDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTDAGFHFAGDGKLAGIVQ 254 (423)
T ss_pred cceeeeccCCCCHHHHHHHHhhceeecCCcCCcccHHHHHHHHhhccccccCCCceEEEEEEcCCCccccCCcceeeEec
Confidence 2234578999999999999999888876633 33433332224433345677888886 22221
Q ss_pred -------------------CChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 120 -------------------YDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 120 -------------------~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
.|=-.+-.++++|+++||.+-. ..-.+ ...+.+.|.+-+. +|.+.++...
T Consensus 255 PNDg~CHL~~~g~Yt~s~~~DYPSi~ql~~kL~e~nI~~IF-AVT~~---~~~~Y~~Ls~lip---gs~vg~Ls~D 323 (423)
T smart00187 255 PNDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENNINPIF-AVTKK---QVSLYKELSALIP---GSSVGVLSED 323 (423)
T ss_pred CCCCcceeCCCCCcCccCcCCCCCHHHHHHHHHhcCceEEE-EEccc---chhHHHHHHHhcC---cceeeecccC
Confidence 0222788999999999996532 23222 2457777776663 4555555444
No 68
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.00 E-value=0.092 Score=55.38 Aligned_cols=141 Identities=16% Similarity=0.236 Sum_probs=90.5
Q ss_pred cceEEEEEeCChhhc-CCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhccccc
Q 015543 3 LEATMICIDNSEWMR-NGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDI 81 (405)
Q Consensus 3 lEa~~IvIDnSesMr-ngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~ 81 (405)
+-||++.||+|-||. .|-|.|-.-. .-|+..+|.. +-|...|-||+|+...-+|-+ .-|..+..|.+
T Consensus 463 ~aAvallvDtS~SM~~eGRw~PmKQt--ALALhHLv~T---rfrGD~l~~i~Fgr~A~~v~v-------~eLt~l~~v~e 530 (652)
T COG4867 463 QAAVALLVDTSFSMVMEGRWLPMKQT--ALALHHLVCT---RFRGDALQIIAFGRYARTVTA-------AELTGLAGVYE 530 (652)
T ss_pred ccceeeeeeccHHHHHhccCCchHHH--HHHHHHHHHh---cCCCcceEEEeccchhcccCH-------HHHhcCCCccc
Confidence 458999999999997 6755554221 1244444444 669999999999987533211 12233333333
Q ss_pred CCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecC-CCC---------------CChhHHHHHH---HHHHhCCceEEEE
Q 015543 82 GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGS-PVK---------------YDRKVMEMIG---KKLKKNSVAIDIV 142 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgS-pi~---------------~d~~~l~~~a---kkLKknnI~VdII 142 (405)
. .+++..||..|...|+.- + .-.+.||++.++ |.. .||..|.++. .++.+.++.|.+.
T Consensus 531 q-gTNlhhaL~LA~r~l~Rh-~-~~~~~il~vTDGePtAhle~~DG~~~~f~yp~DP~t~~~Tvr~~d~~~r~G~q~t~F 607 (652)
T COG4867 531 Q-GTNLHHALALAGRHLRRH-A-GAQPVVLVVTDGEPTAHLEDGDGTSVFFDYPPDPRTIAHTVRGFDDMARLGAQVTIF 607 (652)
T ss_pred c-ccchHHHHHHHHHHHHhC-c-ccCceEEEEeCCCccccccCCCCceEecCCCCChhHHHHHHHHHHHHHhccceeeEE
Confidence 3 478999999999999852 3 334445555443 321 2455555553 4567899999999
Q ss_pred EeCCCCCCcHHHHHHHHHHHc
Q 015543 143 NFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 143 ~FG~e~~~n~~~L~~f~~~vn 163 (405)
-+|-.- -|..|+++|.
T Consensus 608 rLg~Dp-----gL~~Fv~qva 623 (652)
T COG4867 608 RLGSDP-----GLARFIDQVA 623 (652)
T ss_pred eecCCH-----hHHHHHHHHH
Confidence 999766 4777777664
No 69
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=95.73 E-value=0.58 Score=46.14 Aligned_cols=147 Identities=14% Similarity=0.168 Sum_probs=97.2
Q ss_pred eEEEEEeCChhhcCC------CC----CCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCce--EEECCC-C----
Q 015543 5 ATMICIDNSEWMRNG------DY----SPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR--VLTTPT-T---- 67 (405)
Q Consensus 5 a~~IvIDnSesMrng------D~----~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~--vLvtlT-~---- 67 (405)
.+++.||.+.|-.+. -| .||-++.+..++-.++..|-+ -..+-+..|+++-.. .+...- +
T Consensus 33 nl~vaIDfT~SNg~p~~~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~---D~~ip~~GFGa~~~~~~~v~~~f~~~~~~ 109 (254)
T cd01459 33 NLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPYDS---DKLIPAFGFGAIVTKDQSVFSFFPGYSES 109 (254)
T ss_pred eEEEEEEeCCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHhcCC---CCceeeEeecccCCCCCccccccCCCCCC
Confidence 578999999874221 12 468888888888888887544 456777778765321 111110 1
Q ss_pred ----CHHHHHH----hhcccccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceE
Q 015543 68 ----DLGKILA----CMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAI 139 (405)
Q Consensus 68 ----D~~kils----~L~~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~V 139 (405)
-...++. +|..+++.|.++|.--|+.|...-++......-.-++++.++-+ .|.....+++.++.+.-+.|
T Consensus 110 p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i-~D~~~t~~aIv~AS~~PlSI 188 (254)
T cd01459 110 PECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEI-TDMNETIKAIVEASKYPLSI 188 (254)
T ss_pred CcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCc-ccHHHHHHHHHHHhcCCeEE
Confidence 1245554 45577889999999888888765554322222334455556665 46777788888889999999
Q ss_pred EEEEeCCCCCCcHHHHHHH
Q 015543 140 DIVNFGEDDDGKPEKLEAL 158 (405)
Q Consensus 140 dII~FG~e~~~n~~~L~~f 158 (405)
-+||+|...+ ..|+.|
T Consensus 189 iiVGVGd~~F---~~M~~L 204 (254)
T cd01459 189 VIVGVGDGPF---DAMERL 204 (254)
T ss_pred EEEEeCCCCh---HHHHHh
Confidence 9999999876 566665
No 70
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=95.67 E-value=0.2 Score=48.93 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=96.2
Q ss_pred HHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHH----------------------HHHHhhccc--ccC---
Q 015543 30 ADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLG----------------------KILACMHEL--DIG--- 82 (405)
Q Consensus 30 ~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~----------------------kils~L~~l--~~~--- 82 (405)
..++..|.++++.-|-.|.|.||+--..+.+.|-+-+.... ..++.|.++ .++
T Consensus 47 l~di~VFLNAhlaf~~~NrVaVva~~s~~~~yLypss~s~~k~se~e~tr~sd~yrrfr~vde~~i~eiyrl~e~~~k~s 126 (296)
T COG5242 47 LNDIVVFLNAHLAFSRNNRVAVVAGYSQGKTYLYPSSESALKASESENTRNSDMYRRFRNVDETDITEIYRLIEHPHKNS 126 (296)
T ss_pred HHHHHHHHHHHHhhccCCeEEEEEeccCceEEeccCcchhhhhhcccCccchhhhhhhcccchHHHHHHHHHHhCccccc
Confidence 46788899999999999999999887666677765433211 134444443 122
Q ss_pred CcccHHHHHHHHHHHhcccCCC-CCCeEEEEEecCCCCCChh----HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHH
Q 015543 83 GEMNIAAGIQVAQLALKHRQNK-NQRQRIIVFAGSPVKYDRK----VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEA 157 (405)
Q Consensus 83 G~~sL~~gL~iA~lALKhr~~k-~~~~RIVvFvgSpi~~d~~----~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~ 157 (405)
-...+.-|+..+..-..||+++ ..+.||+||..|-- |.. -..+-+--+.|.||+|++++++... ..|.+
T Consensus 127 qr~~v~gams~glay~n~~~~e~slkSriliftlsG~--d~~~qYip~mnCiF~Aqk~~ipI~v~~i~g~s----~fl~Q 200 (296)
T COG5242 127 QRYDVGGAMSLGLAYCNHRDEETSLKSRILIFTLSGR--DRKDQYIPYMNCIFAAQKFGIPISVFSIFGNS----KFLLQ 200 (296)
T ss_pred ceeehhhhhhhhHHHHhhhcccccccceEEEEEecCc--hhhhhhchhhhheeehhhcCCceEEEEecCcc----HHHHH
Confidence 2466777777777777788876 46789999987541 111 1122333457899999999998754 57888
Q ss_pred HHHHHcCCCCcEEEEecCCCchhhhhhhcC
Q 015543 158 LLAAVNNNDSSHLVHVPTGPNALSDVLISS 187 (405)
Q Consensus 158 f~~~vn~~d~Shlv~vp~g~~lLsD~l~sS 187 (405)
-+++++| -|++|..-.. |-..|+++
T Consensus 201 ~~daTgG----~Yl~ve~~eG-llqyL~~~ 225 (296)
T COG5242 201 CCDATGG----DYLTVEDTEG-LLQYLLSL 225 (296)
T ss_pred HhhccCC----eeEeecCchh-HHHHHHHH
Confidence 8887754 4666655322 34555554
No 71
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=94.95 E-value=0.0075 Score=36.52 Aligned_cols=16 Identities=50% Similarity=0.839 Sum_probs=9.8
Q ss_pred ChHHHHHHHHHccccC
Q 015543 324 DEDKELALALQMSMQD 339 (405)
Q Consensus 324 ~ee~~ia~A~~ms~~~ 339 (405)
+||++|++||+|||++
T Consensus 2 ~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 2 DEDEDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhcc
Confidence 4566666666666653
No 72
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.59 E-value=0.25 Score=55.83 Aligned_cols=170 Identities=19% Similarity=0.245 Sum_probs=103.0
Q ss_pred eEEEEEeCChhh-cCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCC-----------c---------eEEE
Q 015543 5 ATMICIDNSEWM-RNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG-----------V---------RVLT 63 (405)
Q Consensus 5 a~~IvIDnSesM-rngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~-----------~---------~vLv 63 (405)
+.|+.||.|-.- +|| -+.+..++++.++..+-..-|.-.||||++-... + ++.+
T Consensus 419 afvFmIDVSy~Ai~~G-----~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv~dvfv 493 (1007)
T KOG1984|consen 419 AFVFMIDVSYNAISNG-----AVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDVDDVFV 493 (1007)
T ss_pred eEEEEEEeehhhhhcc-----hHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCccccCceEEEeeccccccc
Confidence 568888988442 333 2346777888888877778888999999997532 1 1122
Q ss_pred CCCC-------CHHHHHHh-hccc------ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCC--------
Q 015543 64 TPTT-------DLGKILAC-MHEL------DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYD-------- 121 (405)
Q Consensus 64 tlT~-------D~~kils~-L~~l------~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d-------- 121 (405)
++-+ +-.++++. |..| .-.-++-|+.+|+.|.+|||... .-+++||..+.-+.+
T Consensus 494 Pf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~~----gGKl~vF~s~Lpt~g~g~kl~~r 569 (1007)
T KOG1984|consen 494 PFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAAD----GGKLFVFHSVLPTAGAGGKLSNR 569 (1007)
T ss_pred ccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhccC----CceEEEEecccccccCccccccc
Confidence 2221 12233332 3333 11246889999999999999832 667888875433211
Q ss_pred ----------h--------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCC---CcEEEEecCCCchh
Q 015543 122 ----------R--------KVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND---SSHLVHVPTGPNAL 180 (405)
Q Consensus 122 ----------~--------~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d---~Shlv~vp~g~~lL 180 (405)
+ +...++|+.+.+.+|.||+..|-..- .-+.-+-.++..+ ++. ..||...-.++.|+
T Consensus 570 ~D~~l~~t~kek~l~~pq~~~y~~LA~e~v~~g~svDlF~t~~ay-vDvAtlg~v~~~T-gG~vy~Y~~F~a~~D~~rl~ 647 (1007)
T KOG1984|consen 570 DDRRLIGTDKEKNLLQPQDKTYTTLAKEFVESGCSVDLFLTPNAY-VDVATLGVVPALT-GGQVYKYYPFQALTDGPRLL 647 (1007)
T ss_pred chhhhhcccchhhccCcchhHHHHHHHHHHHhCceEEEEEcccce-eeeeeeccccccc-CceeEEecchhhcccHHHHH
Confidence 1 12458999999999999999884422 2233444444433 222 22333334456778
Q ss_pred hhhhh
Q 015543 181 SDVLI 185 (405)
Q Consensus 181 sD~l~ 185 (405)
.|...
T Consensus 648 nDL~~ 652 (1007)
T KOG1984|consen 648 NDLVR 652 (1007)
T ss_pred HHHHH
Confidence 88773
No 73
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=94.29 E-value=1.3 Score=42.63 Aligned_cols=170 Identities=16% Similarity=0.190 Sum_probs=100.7
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHH-HH-----HHHhhccCCcCCcE--EEEEecCC-CceEEECCC-----CCHH
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAV-SL-----ICGAKTQSNPENTV--GILTMGGK-GVRVLTTPT-----TDLG 70 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv-~~-----fv~~k~~~NPes~V--Glvtmag~-~~~vLvtlT-----~D~~ 70 (405)
+++|+||.|.||-.. .|..|.+.. .. ++.. +...|...| .++-.+|. ...++++-| .|..
T Consensus 5 aLvLavDvS~SVD~~-----E~~lQ~~G~A~Al~dp~V~~A-i~~g~~g~Iav~~~eWsg~~~q~~~v~Wt~i~~~~da~ 78 (205)
T PF06707_consen 5 ALVLAVDVSGSVDAD-----EYRLQREGYAAALRDPEVIAA-ILSGPIGRIAVAVVEWSGPGRQRVVVPWTRIDSPADAE 78 (205)
T ss_pred eeeeeeeccCCCCHH-----HHHHHHHHHHHHHCCHHHHHH-HhcCCCCeEEEEEEEecCCCCceEEeCCEEeCCHHHHH
Confidence 689999999998654 445555532 22 2222 234565555 45556663 346777665 2445
Q ss_pred HHHHhhccc--ccCCcccHHHHHHHHHHHhcccCCCC-CCeEEEEEec-CCCCCChhHHH-HHHHHHHhCCceEEEEEeC
Q 015543 71 KILACMHEL--DIGGEMNIAAGIQVAQLALKHRQNKN-QRQRIIVFAG-SPVKYDRKVME-MIGKKLKKNSVAIDIVNFG 145 (405)
Q Consensus 71 kils~L~~l--~~~G~~sL~~gL~iA~lALKhr~~k~-~~~RIVvFvg-Spi~~d~~~l~-~~akkLKknnI~VdII~FG 145 (405)
.+-..|... ...+.++++.+|..|...|... +. ..+|+|=++| ++.+..+ .+. ..-..+...+|.|.-+..+
T Consensus 79 a~A~~l~~~~r~~~~~Taig~Al~~a~~ll~~~--~~~~~RrVIDvSGDG~~N~G~-~p~~~ard~~~~~GitINgL~I~ 155 (205)
T PF06707_consen 79 AFAARLRAAPRRFGGRTAIGSALDFAAALLAQN--PFECWRRVIDVSGDGPNNQGP-RPVTSARDAAVAAGITINGLAIL 155 (205)
T ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhC--CCCCceEEEEECCCCCCCCCC-CccHHHHHHHHHCCeEEeeeEec
Confidence 555566655 2345599999999999999874 34 4555555553 3433322 444 5556778899999999998
Q ss_pred CCCCCcH-HHHHHHHHHHcCCCCcEEEEecCCCchhhhhh
Q 015543 146 EDDDGKP-EKLEALLAAVNNNDSSHLVHVPTGPNALSDVL 184 (405)
Q Consensus 146 ~e~~~n~-~~L~~f~~~vn~~d~Shlv~vp~g~~lLsD~l 184 (405)
....... .+-..|-+.|=++.+++++++ .+..-+.+++
T Consensus 156 ~~~~~~~~~L~~yy~~~VIgGpgAFV~~a-~~~~df~~Ai 194 (205)
T PF06707_consen 156 DDDPFGGADLDAYYRRCVIGGPGAFVETA-RGFEDFAEAI 194 (205)
T ss_pred CCCCCccccHHHHHhhhcccCCCceEEEc-CCHHHHHHHH
Confidence 8762111 234444445545555555544 3433355544
No 74
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=94.27 E-value=0.03 Score=36.90 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHhcHHHHHHH
Q 015543 222 NIDPELALALRVSMEEERAR 241 (405)
Q Consensus 222 ~~DPELa~ALr~SlEEe~~r 241 (405)
+.|++|++||++||+|.+.+
T Consensus 1 ~EDe~Lq~Ai~lSl~e~e~~ 20 (26)
T smart00726 1 DEDEDLQLALELSLQEAEES 20 (26)
T ss_pred ChHHHHHHHHHHhHHHhhhc
Confidence 36899999999999998765
No 75
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=93.99 E-value=0.03 Score=33.93 Aligned_cols=16 Identities=44% Similarity=0.596 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHhcHHH
Q 015543 222 NIDPELALALRVSMEE 237 (405)
Q Consensus 222 ~~DPELa~ALr~SlEE 237 (405)
+.|++|+.||++||+|
T Consensus 2 ~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 2 DEDEDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhcc
Confidence 3589999999999997
No 76
>KOG2326 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku80 autoantigen) [Replication, recombination and repair]
Probab=93.83 E-value=1.2 Score=48.89 Aligned_cols=145 Identities=12% Similarity=0.104 Sum_probs=94.9
Q ss_pred CCcceEEEEEeCChhhcCCCCC-CcHHHHHHHHHHHHHHhhccCC-cCCcEEEEEecCC-------------CceEEEC-
Q 015543 1 MVLEATMICIDNSEWMRNGDYS-PSRLRAQADAVSLICGAKTQSN-PENTVGILTMGGK-------------GVRVLTT- 64 (405)
Q Consensus 1 m~lEa~~IvIDnSesMrngD~~-PtRl~Aq~dAv~~fv~~k~~~N-Pes~VGlvtmag~-------------~~~vLvt- 64 (405)
|+-|++++++|.+.+|.+.+=. -+-|+-+..++..++..|+-.+ --.-||+|.+.-. +..|+-+
T Consensus 2 s~se~ttfilDvG~~Ms~~~~~~~S~fE~a~~y~~~~lsrK~fa~rktD~is~vlyncD~ten~legg~~fqnisvl~p~ 81 (669)
T KOG2326|consen 2 SSSESTTFILDVGPSMSKNNETGKSNFEKAMAYLEYTLSRKSFASRKTDWISCVLYNCDVTENSLEGGNVFQNISVLAPV 81 (669)
T ss_pred CCCcceEEEEecCccccccCCCccccHHHHHHHHHHHHHHHHhhccCCceEEEEEecCCCccCccccccccceeEEeecc
Confidence 4568888888999999999811 3589999999999999987776 5557898887621 1345555
Q ss_pred CCCCHHHHHHhhcccccCC--cccHHHHHHHHHH-HhcccC-CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEE
Q 015543 65 PTTDLGKILACMHELDIGG--EMNIAAGIQVAQL-ALKHRQ-NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAID 140 (405)
Q Consensus 65 lT~D~~kils~L~~l~~~G--~~sL~~gL~iA~l-ALKhr~-~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~Vd 140 (405)
.|...-.++..+.+....+ ..+|..+|-+.+- ...|.. ++...+|+|+..-..++.-.++++ ++..|++.+|.+-
T Consensus 82 ~tpaf~~l~k~~~~~~qqns~q~Df~gal~vs~dL~~qhe~~~k~~~kr~Il~~~~l~~dfsd~~~-ive~l~~~didL~ 160 (669)
T KOG2326|consen 82 TTPAFIGLIKRLKQYCQQNSHQSDFEGALSVSQDLLVQHEDIKKQFQKRKILKQIVLFTDFSDDLF-IVEDLTDEDIDLL 160 (669)
T ss_pred cchhhHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhccchhhceEEEEeecccccchhhHH-HHHHHhhcCccee
Confidence 3445566666666432222 2556666666554 334432 233345555444333333345555 9999999999999
Q ss_pred EEEeCC
Q 015543 141 IVNFGE 146 (405)
Q Consensus 141 II~FG~ 146 (405)
++|+-.
T Consensus 161 ~~gldf 166 (669)
T KOG2326|consen 161 TEGLDF 166 (669)
T ss_pred EeeccC
Confidence 997753
No 77
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=1.1 Score=49.94 Aligned_cols=144 Identities=19% Similarity=0.270 Sum_probs=93.6
Q ss_pred EEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEE----------------CCC---
Q 015543 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLT----------------TPT--- 66 (405)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLv----------------tlT--- 66 (405)
.++|||.= ..+.+|++-++++..++.- ..|..-|||||++.. ++|.- .+|
T Consensus 124 f~fVvDtc-------~~eeeL~~LkssL~~~l~l---LP~~alvGlItfg~~-v~v~el~~~~~sk~~VF~G~ke~s~~q 192 (745)
T KOG1986|consen 124 FVFVVDTC-------MDEEELQALKSSLKQSLSL---LPENALVGLITFGTM-VQVHELGFEECSKSYVFSGNKEYSAKQ 192 (745)
T ss_pred EEEEEeec-------cChHHHHHHHHHHHHHHhh---CCCcceEEEEEecce-EEEEEcCCCcccceeEEeccccccHHH
Confidence 36677754 3468999999999888875 677777899999753 23321 011
Q ss_pred --------C----------CHHHHHH-----------hhccccc------CCc---ccHHHHHHHHHHHhcccCCCCCCe
Q 015543 67 --------T----------DLGKILA-----------CMHELDI------GGE---MNIAAGIQVAQLALKHRQNKNQRQ 108 (405)
Q Consensus 67 --------~----------D~~kils-----------~L~~l~~------~G~---~sL~~gL~iA~lALKhr~~k~~~~ 108 (405)
+ ...++|. -|..|++ .|. -..+.||.+|...|... -++...
T Consensus 193 ~~~~L~~~~~~~~~~~~~~~~~rFL~P~~~c~~~L~~lle~L~~d~wpV~~g~Rp~RcTG~Al~iA~~Ll~~c-~p~~g~ 271 (745)
T KOG1986|consen 193 LLDLLGLSGGAGKGSENQSASNRFLLPAQECEFKLTNLLEELQPDPWPVPPGHRPLRCTGVALSIASGLLEGC-FPNTGA 271 (745)
T ss_pred HHHHhcCCcccccCCcccccchhhhccHHHHHHHHHHHHHHhcCCCCCCCCCCCcccchhHHHHHHHHHhccc-CCCCcc
Confidence 1 1111111 1112221 221 45788899998888754 678999
Q ss_pred EEEEEecCCCCCChhH------------------------------HHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015543 109 RIIVFAGSPVKYDRKV------------------------------MEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~------------------------------l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f 158 (405)
|||+|+|+|.+..++. -.++|+++..+|..|||..=+-.. --...++.+
T Consensus 272 rIv~f~gGPcT~GpG~vv~~el~~piRshhdi~~d~a~y~kKa~KfY~~La~r~~~~ghvlDifa~~lDQ-vGi~EMk~l 350 (745)
T KOG1986|consen 272 RIVLFAGGPCTRGPGTVVSRELKEPIRSHHDIEKDNAPYYKKAIKFYEKLAERLANQGHVLDIFAAALDQ-VGILEMKPL 350 (745)
T ss_pred eEEEeccCCCCcCCceecchhhcCCCcCcccccCcchHHHHHHHHHHHHHHHHHHhCCceEeeeeeeccc-cchHHHHHH
Confidence 9999999987643332 257899999999999997766544 344556666
Q ss_pred HHHH
Q 015543 159 LAAV 162 (405)
Q Consensus 159 ~~~v 162 (405)
++.+
T Consensus 351 ~~~T 354 (745)
T KOG1986|consen 351 VEST 354 (745)
T ss_pred hhcC
Confidence 6644
No 78
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=91.84 E-value=3.1 Score=43.31 Aligned_cols=168 Identities=16% Similarity=0.199 Sum_probs=98.7
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcc---ccc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHE---LDI 81 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~---l~~ 81 (405)
.++|++|.|.+|.-|+-..++|+.+..++-.+...-..++ ..||++++++.. ...++|......+...|.. +.+
T Consensus 226 ~v~l~lD~~~~m~~~~~~~~~~e~av~~a~~la~~~l~~g--d~vg~~~~~~~~-~~~~~p~~G~~~l~~~l~~l~~~~~ 302 (416)
T COG1721 226 TVVLVLDASRSMLFGSGVASKFEEAVRAAASLAYAALKNG--DRVGLLIFGGGG-PKWIPPSRGRRHLARILKALALLRP 302 (416)
T ss_pred eEEEEEeCCccccCCCCCccHHHHHHHHHHHHHHHHHhCC--CeeEEEEECCCc-ceeeCCCcchHHHHHHHHHhhccCC
Confidence 5899999999999999999999999998888877655554 579999998764 6778888766665555554 455
Q ss_pred CCc-ccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcH--------
Q 015543 82 GGE-MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKP-------- 152 (405)
Q Consensus 82 ~G~-~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~-------- 152 (405)
.+. ++....... ..+.. .-+..++++...........+..+...+.+. +.+-++.|.+....+.
T Consensus 303 ~~~~~~~~~~~~~--~~~l~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~ 375 (416)
T COG1721 303 APEETDYIRRVSK--LDFLP----PRRPLVILITDLARHGVDELLLEVLDPLGER-PLVLIVDLRDPAGEAEALRALYAR 375 (416)
T ss_pred CCcchhHHHHhhh--hhccC----cccceEEEeehhhccccchhhhccccccCCC-ceEEEEEecCCccccHHHHHHHHH
Confidence 444 333333222 12211 1122334343332222233455556566565 7777888855311121
Q ss_pred ---HHHHHHHHHHcCCCCcEEEEecCCCchhhhhh
Q 015543 153 ---EKLEALLAAVNNNDSSHLVHVPTGPNALSDVL 184 (405)
Q Consensus 153 ---~~L~~f~~~vn~~d~Shlv~vp~g~~lLsD~l 184 (405)
.+.+++...+. .-+.+++.++.+. .+...+
T Consensus 376 ~~~~~r~~~~~~l~-~~gv~~~~~~~~~-~~~~~~ 408 (416)
T COG1721 376 KLLADRAALARRLR-RLGVLVIDVRTDE-DAPAAL 408 (416)
T ss_pred HHHHHHHHHHHHHH-HcCCeEEecCccc-chHHHH
Confidence 11222222222 2467888888775 344444
No 79
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=91.71 E-value=3 Score=37.81 Aligned_cols=120 Identities=19% Similarity=0.178 Sum_probs=78.6
Q ss_pred CCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCc---eE--EECCCCC--------HHHHHH----hhcccccCCc
Q 015543 22 SPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGV---RV--LTTPTTD--------LGKILA----CMHELDIGGE 84 (405)
Q Consensus 22 ~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~---~v--LvtlT~D--------~~kils----~L~~l~~~G~ 84 (405)
.||.++.+..++-.++..|-..+..- +..|+++.+ .+ .-+++.+ ...+++ ++.++++.|.
T Consensus 9 ~~N~Y~~ai~~vg~il~~Yd~dk~~p---~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v~l~GP 85 (146)
T PF07002_consen 9 QPNPYQQAIRAVGEILQDYDSDKMIP---AYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKVQLSGP 85 (146)
T ss_pred CCCHHHHHHHHHHHHHHhhccCCccc---eeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhheEECCC
Confidence 68999999999999999986555544 455666543 11 1234433 344544 5667899999
Q ss_pred ccHHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeC
Q 015543 85 MNIAAGIQVAQLALK-HRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFG 145 (405)
Q Consensus 85 ~sL~~gL~iA~lALK-hr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG 145 (405)
++|.--|+.|...-+ ..++...=...+|+.++-++ |.+.-.+++-.+.+.-++|-|||.|
T Consensus 86 T~fapiI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~-D~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 86 TNFAPIINHAAKIAKQSNQNGQQYFILLILTDGQIT-DMEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred ccHHHHHHHHHHHHhhhccCCceEEEEEEecccccc-cHHHHHHHHHHHccCCeEEEEEEeC
Confidence 999988888776655 22233344556666677765 4555555555566677777777776
No 80
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=91.68 E-value=0.078 Score=34.94 Aligned_cols=19 Identities=47% Similarity=0.821 Sum_probs=13.8
Q ss_pred ChHHHHHHHHHccccCCCC
Q 015543 324 DEDKELALALQMSMQDDTK 342 (405)
Q Consensus 324 ~ee~~ia~A~~ms~~~~~~ 342 (405)
+||++|++||+||+++.+.
T Consensus 1 ~EDe~Lq~Ai~lSl~e~e~ 19 (26)
T smart00726 1 DEDEDLQLALELSLQEAEE 19 (26)
T ss_pred ChHHHHHHHHHHhHHHhhh
Confidence 3677888888888876544
No 81
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.95 E-value=2.7 Score=49.38 Aligned_cols=140 Identities=19% Similarity=0.167 Sum_probs=101.4
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEEC---------CCCCHHHHHHh
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTT---------PTTDLGKILAC 75 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvt---------lT~D~~kils~ 75 (405)
.++|++|.|.|| .+-||...+..++.++.. .-...-|-|+++.... .-+++ -..+...+.+.
T Consensus 227 diviLlD~SgSm-----~g~~~~lak~tv~~iLdt---Ls~~Dfvni~tf~~~~-~~v~pc~~~~lvqAt~~nk~~~~~~ 297 (1104)
T KOG2353|consen 227 DIVILLDVSGSM-----SGLRLDLAKQTVNEILDT---LSDNDFVNILTFNSEV-NPVSPCFNGTLVQATMRNKKVFKEA 297 (1104)
T ss_pred ceEEEEeccccc-----cchhhHHHHHHHHHHHHh---cccCCeEEEEeecccc-CcccccccCceeecchHHHHHHHHH
Confidence 589999999998 567999999999999997 5666778888887653 33332 22467778889
Q ss_pred hcccccCCcccHHHHHHHHHHHhcccC----C---CCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 76 MHELDIGGEMNIAAGIQVAQLALKHRQ----N---KNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 76 L~~l~~~G~~sL~~gL~iA~lALKhr~----~---k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
+..+++.|.+++..|+..|...|..-. + ....+-|++|..+... +...+++.-..= ...|||....+|.+.
T Consensus 298 i~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~-~~~~If~~yn~~-~~~Vrvftflig~~~ 375 (1104)
T KOG2353|consen 298 IETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDE-NAKEIFEKYNWP-DKKVRVFTFLIGDEV 375 (1104)
T ss_pred HhhhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCcc-cHHHHHHhhccC-CCceEEEEEEecccc
Confidence 999999999999999999998886321 1 2256778888766532 344444432111 578999999999988
Q ss_pred CCcHHHHH
Q 015543 149 DGKPEKLE 156 (405)
Q Consensus 149 ~~n~~~L~ 156 (405)
.+...++
T Consensus 376 -~~~~~~~ 382 (1104)
T KOG2353|consen 376 -YDLDEIQ 382 (1104)
T ss_pred -cccccch
Confidence 5644443
No 82
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=89.94 E-value=3.9 Score=45.02 Aligned_cols=59 Identities=19% Similarity=0.376 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcccCCCCCCeEEEEEe-cCCCCC-----C-----hhHHHHHHHHHHhC-CceEEEEEeCCCC
Q 015543 88 AAGIQVAQLALKHRQNKNQRQRIIVFA-GSPVKY-----D-----RKVMEMIGKKLKKN-SVAIDIVNFGEDD 148 (405)
Q Consensus 88 ~~gL~iA~lALKhr~~k~~~~RIVvFv-gSpi~~-----d-----~~~l~~~akkLKkn-nI~VdII~FG~e~ 148 (405)
+.||..|+.-|..|+ -.++-+|||+ |.|... + ..+|-.+++...+. +|.+--||+|..+
T Consensus 499 GeAl~wa~~rL~~R~--e~rKiL~ViSDG~P~D~~TlsvN~~~~l~~hLr~vi~~~e~~~~vel~aigIg~Dv 569 (600)
T TIGR01651 499 GEALMWAHQRLIARP--EQRRILMMISDGAPVDDSTLSVNPGNYLERHLRAVIEEIETRSPVELLAIGIGHDV 569 (600)
T ss_pred hHHHHHHHHHHhcCc--ccceEEEEEeCCCcCCccccccCchhHHHHHHHHHHHHHhccCCceEEEeeccccH
Confidence 678999999999875 3566666666 566531 1 23577788887775 8988888888754
No 83
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=88.80 E-value=13 Score=36.35 Aligned_cols=136 Identities=21% Similarity=0.274 Sum_probs=73.9
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCc-EEEEEecCCCce---EEE--CCCCCHHHHHHhhcc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENT-VGILTMGGKGVR---VLT--TPTTDLGKILACMHE 78 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~-VGlvtmag~~~~---vLv--tlT~D~~kils~L~~ 78 (405)
++-|+||+|.||+. .|-.+.+ .++-.|++..-..+--.. +|.-|.+-++-. -+. --+..++.+..-+|-
T Consensus 14 ~VtlLID~SGSMrg---r~~~vA~--~~adila~aL~~~gvp~EVlGFtT~aw~gg~~~~~w~~~G~p~~pgrln~l~h~ 88 (219)
T PF11775_consen 14 VVTLLIDCSGSMRG---RPIEVAA--LCADILARALERCGVPVEVLGFTTRAWKGGRSREAWLAAGRPRYPGRLNDLRHI 88 (219)
T ss_pred EEEEEEeCCcCCCC---ChHHHHH--HHHHHHHHHHHhCCCCeEEEeeecCCcCCcchHHHHHhcCCCCCChHHHHHHHH
Confidence 56799999999997 3434433 233334443333443333 366666322111 111 012345655554443
Q ss_pred c---------------------ccCC-cccHHHHHHHHHHHhcccCCCCCCeEEEEEe-cCCCC------CC----hhHH
Q 015543 79 L---------------------DIGG-EMNIAAGIQVAQLALKHRQNKNQRQRIIVFA-GSPVK------YD----RKVM 125 (405)
Q Consensus 79 l---------------------~~~G-~~sL~~gL~iA~lALKhr~~k~~~~RIVvFv-gSpi~------~d----~~~l 125 (405)
+ .+.. +.+ +.||..|+.-|..|+ ..++-+|||+ |.|.. .+ ..+|
T Consensus 89 vyk~a~~~wrraR~~l~~m~~~~~~~eniD-GeAl~~a~~rL~~r~--e~rkiLiViSDG~P~d~st~~~n~~~~L~~HL 165 (219)
T PF11775_consen 89 VYKDADTPWRRARRNLGLMMREGLLKENID-GEALRWAAERLLARP--EQRKILIVISDGAPADDSTLSANDGDYLDAHL 165 (219)
T ss_pred HHHhcCChhhhHHHhHHHHhhccccccCCc-HHHHHHHHHHHHcCC--ccceEEEEEeCCCcCcccccccCChHHHHHHH
Confidence 3 1111 222 678888888888754 3555555665 56652 11 2466
Q ss_pred HHHHHHHHh-CCceEEEEEeCCCC
Q 015543 126 EMIGKKLKK-NSVAIDIVNFGEDD 148 (405)
Q Consensus 126 ~~~akkLKk-nnI~VdII~FG~e~ 148 (405)
..+++...+ ..|.+--||.|...
T Consensus 166 r~vi~~ie~~~~Vel~aiGIg~D~ 189 (219)
T PF11775_consen 166 RQVIAEIETRSDVELIAIGIGHDV 189 (219)
T ss_pred HHHHHHHhccCCcEEEEEEcCCCc
Confidence 777777765 46888777777654
No 84
>PF10221 DUF2151: Cell cycle and development regulator; InterPro: IPR019355 This entry represents the cell cycle regulator Mat89b, which plays an evolutionarily conserved role as a crucial regulator of both cell cycle and development []. Mat89Bb is a PNG kinase substrate that is essential for S-M cycles of early Drosophila embryogenesis, Xenopus embryonic cell cycles and morphogenesis, and cell division in cultured mammalian cells.
Probab=87.49 E-value=5.6 Score=44.66 Aligned_cols=120 Identities=16% Similarity=0.254 Sum_probs=89.0
Q ss_pred EEEEEeCChhhcC------------------CCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCC-
Q 015543 6 TMICIDNSEWMRN------------------GDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT- 66 (405)
Q Consensus 6 ~~IvIDnSesMrn------------------gD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT- 66 (405)
||||||-|.||.. .=+..|=|.|..+|+-++|+=.++.=|....=-++.++..+..|-+-+
T Consensus 8 TVfVLDh~p~f~~ss~~~i~~d~~~~~~~~~~~i~KSLWTc~vEa~~EYcRIV~DlFP~~k~IrfivsD~~a~~lntW~~ 87 (695)
T PF10221_consen 8 TVFVLDHSPYFAESSNQPIDFDIVKKSRQQKAPISKSLWTCAVEASIEYCRIVWDLFPDGKLIRFIVSDTAAHILNTWST 87 (695)
T ss_pred EEEEEcCCchhhhhccCcEEEeeecCCCCCcCcccchHHHHHHHHHHHHHHHHhhccCCCceEEEEEEccccccccCcCh
Confidence 7999999999832 123357899999999999999999999988855666777778877644
Q ss_pred --CCHHHHHHhhcccccC-------CcccHHHHHHHHHHHhcccCC----------------CCCCeEEEEEecCCCCCC
Q 015543 67 --TDLGKILACMHELDIG-------GEMNIAAGIQVAQLALKHRQN----------------KNQRQRIIVFAGSPVKYD 121 (405)
Q Consensus 67 --~D~~kils~L~~l~~~-------G~~sL~~gL~iA~lALKhr~~----------------k~~~~RIVvFvgSpi~~d 121 (405)
.+...|++.|..+.+- .++++..||.+|..||-+... -..+.|||+|+.-..+..
T Consensus 88 ~~Qsl~~L~~~la~vG~P~~~~~~~~d~svi~GL~~AIEaL~e~td~Q~e~~~~~~~~~~~~~~N~GrIIciT~~k~d~~ 167 (695)
T PF10221_consen 88 SQQSLSHLMNALATVGPPPRSDPENSDYSVIHGLRMAIEALAEPTDSQKEQRASRVNEELKKVENRGRIICITSAKSDES 167 (695)
T ss_pred hhccHHHHHHHHHhcCCCCCCCcccccchhHHHHHHHHHHHhcCCHHHHHHhhcccchhhhhccCCccEEEEEeecCcHH
Confidence 4777888888887332 345899999999999875221 136789999976554443
Q ss_pred hhHH
Q 015543 122 RKVM 125 (405)
Q Consensus 122 ~~~l 125 (405)
-..|
T Consensus 168 m~~L 171 (695)
T PF10221_consen 168 MRSL 171 (695)
T ss_pred HHHH
Confidence 3333
No 85
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=87.40 E-value=13 Score=40.55 Aligned_cols=134 Identities=18% Similarity=0.204 Sum_probs=85.8
Q ss_pred cceEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccC
Q 015543 3 LEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIG 82 (405)
Q Consensus 3 lEa~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~~ 82 (405)
++.+|.|.|.|.||--. -....-++-++|.+. ..|--.=.+|||... |+++.=-..+...-+..+.+..-+
T Consensus 340 l~n~iav~DvSGSM~~~------pm~vaiaLgll~ae~--~~~pf~~~~ITFs~~-P~~~~i~g~~l~ekv~~~~~~~wg 410 (534)
T PF11443_consen 340 LENCIAVCDVSGSMSGP------PMDVAIALGLLIAEL--NKGPFKGRFITFSEN-PQLHKIKGDTLREKVRFIRRMDWG 410 (534)
T ss_pred ccceEEEEecCCccCcc------HHHHHHHHHHHHHHh--cccccCCeEEeecCC-ceEEEecCCCHHHHHHHHHhCCcc
Confidence 68999999999999877 233444677777775 334445578999876 676543334677777788888889
Q ss_pred CcccHHHHHHHHHH-HhcccC-CCCCCeEEEEEecCCCCC-----C---hhHHHHHHHHHHhCCceEEEEEeC
Q 015543 83 GEMNIAAGIQVAQL-ALKHRQ-NKNQRQRIIVFAGSPVKY-----D---RKVMEMIGKKLKKNSVAIDIVNFG 145 (405)
Q Consensus 83 G~~sL~~gL~iA~l-ALKhr~-~k~~~~RIVvFvgSpi~~-----d---~~~l~~~akkLKknnI~VdII~FG 145 (405)
++++|+.....-+. |.++.- ...-.+||+||++=-... + .-+...+-++.++.|-.+=-|-|.
T Consensus 411 ~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfV~SDMeFD~a~~~~~~~w~T~~e~i~~~f~~aGY~~P~iVFW 483 (534)
T PF11443_consen 411 MNTNFQAVFDLILETAVKNKLKQEDMPKRLFVFSDMEFDQASNSSDRPWETNFEAIKRKFEEAGYELPEIVFW 483 (534)
T ss_pred cCCcHHHHHHHHHHHHHHcCCChHHCCceEEEEeccccccccccccCccccHHHHHHHHHHHhCCCCCceEEe
Confidence 99999998865543 344421 123568999998544432 1 123334444555555544444443
No 86
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=84.89 E-value=14 Score=42.06 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=89.9
Q ss_pred eEEEEEeCChh-hcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEE-CCCCC--------------
Q 015543 5 ATMICIDNSEW-MRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLT-TPTTD-------------- 68 (405)
Q Consensus 5 a~~IvIDnSes-MrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLv-tlT~D-------------- 68 (405)
..|+.||.|-- +.+|= +.+..+++..-+..+-+-.|...|++|.+-++. ..+- +|.-|
T Consensus 278 ~yvFlIDVS~~a~~~g~-----~~a~~r~Il~~l~~~~~~dpr~kIaii~fD~sl-~ffk~s~d~~~~~~~vsdld~pFl 351 (861)
T COG5028 278 VYVFLIDVSFEAIKNGL-----VKAAIRAILENLDQIPNFDPRTKIAIICFDSSL-HFFKLSPDLDEQMLIVSDLDEPFL 351 (861)
T ss_pred EEEEEEEeehHhhhcch-----HHHHHHHHHhhccCCCCCCCcceEEEEEEccee-eEEecCCCCccceeeecccccccc
Confidence 56889999954 44542 235555555555555566799999999997653 3322 22111
Q ss_pred ------------HHH-----HHHhhcccc---cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCC---------
Q 015543 69 ------------LGK-----ILACMHELD---IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK--------- 119 (405)
Q Consensus 69 ------------~~k-----ils~L~~l~---~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~--------- 119 (405)
.-+ ++.....+- -.-+..++.||++|++.++. .+-.||+|+++.-+
T Consensus 352 Pf~s~~fv~pl~~~k~~~etLl~~~~~If~d~~~pk~~~G~aLk~a~~l~g~-----~GGkii~~~stlPn~G~Gkl~~r 426 (861)
T COG5028 352 PFPSGLFVLPLKSCKQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGG-----TGGKIIVFLSTLPNMGIGKLQLR 426 (861)
T ss_pred cCCcchhcccHHHHHHHHHHHHHHhhhhhcccCCCccccCHHHHHHHHHhhc-----cCceEEEEeecCCCccccccccc
Confidence 001 111222221 12357889999999998875 66678888866211
Q ss_pred ---------CChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 015543 120 ---------YDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (405)
Q Consensus 120 ---------~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~v 162 (405)
+..+--.+++..+.|-+|.||+-.|.+.- -.+.-+-.+++-+
T Consensus 427 ~d~e~~ll~c~d~fYk~~a~e~~k~gIsvd~Flt~~~y-idvaTls~l~~~T 477 (861)
T COG5028 427 EDKESSLLSCKDSFYKEFAIECSKVGISVDLFLTSEDY-IDVATLSHLCRYT 477 (861)
T ss_pred ccchhhhccccchHHHHHHHHHHHhcceEEEEeccccc-cchhhhcchhhcc
Confidence 22222357899999999999999997654 3445566666544
No 87
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=84.41 E-value=2 Score=37.64 Aligned_cols=92 Identities=13% Similarity=0.211 Sum_probs=53.2
Q ss_pred EEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc--ccCC
Q 015543 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL--DIGG 83 (405)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l--~~~G 83 (405)
++|+||.|.||.+.++. ||.+... .+++.+ ..+|-|+.+- ....-...+.. ....+..+ .-+|
T Consensus 1 i~vaiDtSGSis~~~l~--~fl~ev~---~i~~~~-----~~~v~vi~~D-~~v~~~~~~~~----~~~~~~~~~~~GgG 65 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELR--RFLSEVA---GILRRF-----PAEVHVIQFD-AEVQDVQVFRS----LEDELRDIKLKGGG 65 (126)
T ss_pred CEEEEECCCCCCHHHHH--HHHHHHH---HHHHhC-----CCCEEEEEEC-CEeeeeeEEec----ccccccccccCCCC
Confidence 47999999999776543 4444333 344432 3357777653 33333333333 11223333 4467
Q ss_pred cccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCC
Q 015543 84 EMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPV 118 (405)
Q Consensus 84 ~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi 118 (405)
+++|.-.++-+. +++ ....-+|+|.++-.
T Consensus 66 GTdf~pvf~~~~---~~~---~~~~~vi~fTDg~~ 94 (126)
T PF09967_consen 66 GTDFRPVFEYLE---ENR---PRPSVVIYFTDGEG 94 (126)
T ss_pred CCcchHHHHHHH---hcC---CCCCEEEEEeCCCC
Confidence 899999988874 332 23455778887654
No 88
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=80.40 E-value=8.4 Score=35.18 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 89 AGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 89 ~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
.|..+|...+++.. .+...+|+||+|+-+ +.++=+.+|+.|...++.|.|+.++...
T Consensus 8 Ag~~~a~~i~~~~~-~~~~~~v~il~G~Gn--NGgDgl~~AR~L~~~G~~V~v~~~~~~~ 64 (169)
T PF03853_consen 8 AGRAIAELIRKLFG-SPKGPRVLILCGPGN--NGGDGLVAARHLANRGYNVTVYLVGPPE 64 (169)
T ss_dssp HHHHHHHHHHHHST-CCTT-EEEEEE-SSH--HHHHHHHHHHHHHHTTCEEEEEEEESSS
T ss_pred HHHHHHHHHHHHhc-ccCCCeEEEEECCCC--ChHHHHHHHHHHHHCCCeEEEEEEeccc
Confidence 35667776666542 467788888877753 5788899999999999999998887754
No 89
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=80.01 E-value=34 Score=32.72 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=30.7
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHh--CCceEEEEEeCCCC
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKK--NSVAIDIVNFGEDD 148 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKk--nnI~VdII~FG~e~ 148 (405)
....+|+|+|..... ....+.+++++|++ .++.+.|||-|...
T Consensus 183 ~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~ 228 (355)
T cd03819 183 KGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGR 228 (355)
T ss_pred CCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCccc
Confidence 345677777765433 56778899999988 56788888877644
No 90
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=76.81 E-value=7.3 Score=28.87 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=32.7
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
+|-++|..+...++-+.++-+.|.+++|+|+.|+.|.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 5677898887788889999999999999999999876
No 91
>KOG2327 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku70 autoantigen) [Replication, recombination and repair]
Probab=76.79 E-value=39 Score=37.44 Aligned_cols=142 Identities=20% Similarity=0.278 Sum_probs=94.0
Q ss_pred cceEEEEEeCChhhcCCC---CCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCC------ceEEEC----CCCCH
Q 015543 3 LEATMICIDNSEWMRNGD---YSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG------VRVLTT----PTTDL 69 (405)
Q Consensus 3 lEa~~IvIDnSesMrngD---~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~------~~vLvt----lT~D~ 69 (405)
.|++.+|||.|.+|+.++ +.++-|.....++..++-.+.-.||...+|++..+... -..+.+ ++.-.
T Consensus 18 ~~~ilfvi~~~~s~~~~~~~e~~lspl~~~L~~~~~l~~~~vitn~~~~~~v~~y~~~~~~~~~~~~~l~~l~d~~~~~~ 97 (602)
T KOG2327|consen 18 KEAILFVIDVNPSMKAEEPDEFKLSPLKMILDCIDRLCIQLVITNPIDSVGVLFYGTEETEGLENNTLLFPLGDLGQEEV 97 (602)
T ss_pred ccceEEEEecCHHhhccCcccchhhhHHHHHHHHHHHHhheeecCCCCccceEeecccccccCccceEEeeccccChHHH
Confidence 589999999999999876 55899999999999999999999999999998776432 122332 33444
Q ss_pred HHHHHhhccc------ccCC----cccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCC--ChhHHHHHHHHHHhCCc
Q 015543 70 GKILACMHEL------DIGG----EMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY--DRKVMEMIGKKLKKNSV 137 (405)
Q Consensus 70 ~kils~L~~l------~~~G----~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~--d~~~l~~~akkLKknnI 137 (405)
.+|+.-...- ...| ...|.+-|..+...+-..+.+...+||.+|+.-+... +..+.....+++|...-
T Consensus 98 ~k~~~~~e~~~q~~~~~~~~~~~~~s~ls~vl~~c~~~~~~~~~~~~~krv~l~Td~d~P~~~~~~~~~a~l~r~k~~~~ 177 (602)
T KOG2327|consen 98 KKILELFEEENQLSAVNFYGGMHQKSDLSNVLNYCKRMVFASQKKLSNKRVFLFTDNDNPHERDDFLESAHLQRAKDLVT 177 (602)
T ss_pred HHHHHHhhhhhhhhhhhccCcccccccHHHHHHHHHHHHHHHhhhcccceEEEEecCCCcccccchHHHhhhhhhhhccc
Confidence 4454433221 1111 2357788888776555556678899999998777654 33333333333333332
Q ss_pred eEEEEEeCC
Q 015543 138 AIDIVNFGE 146 (405)
Q Consensus 138 ~VdII~FG~ 146 (405)
.+|+|+.
T Consensus 178 --~~i~~~~ 184 (602)
T KOG2327|consen 178 --KDIGFHH 184 (602)
T ss_pred --ceeeeee
Confidence 2777773
No 92
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=76.75 E-value=29 Score=32.01 Aligned_cols=55 Identities=20% Similarity=0.141 Sum_probs=37.1
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~~n~~~L~~f~~~vn~ 164 (405)
..+.+|+|+|..... ....+.++++++++. ++.+.++|-|... ..++.+++..+.
T Consensus 187 ~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~----~~~~~~~~~~~~ 244 (353)
T cd03811 187 PDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLR----EELEALAKELGL 244 (353)
T ss_pred CCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCccH----HHHHHHHHhcCC
Confidence 455678888876533 566788889999886 6777776655433 466677776653
No 93
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=76.74 E-value=9.2 Score=40.53 Aligned_cols=160 Identities=15% Similarity=0.173 Sum_probs=90.9
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCC---------------------------
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGK--------------------------- 57 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~--------------------------- 57 (405)
.+++++|.|.||++- ++--+.-...+....-+.-...++|+=+|.+|
T Consensus 104 DLYyLmDlS~Sm~dd------l~~l~~lg~~l~~~~~~it~~~~~GfGsfvdK~~~P~~~~~p~~l~~pc~~~~~~c~~~ 177 (426)
T PF00362_consen 104 DLYYLMDLSYSMKDD------LENLKSLGQDLAEEMRNITSNFRLGFGSFVDKPVMPFVSTTPEKLKNPCPSKNPNCQPP 177 (426)
T ss_dssp EEEEEEE-SGGGHHH------HHHHCCCCHHHHHHHHTT-SSEEEEEEEESSSSSTTTST-SSHCHHSTSCCTTS--B--
T ss_pred eEEEEeechhhhhhh------HHHHHHHHHHHHHHHHhcCccceEechhhcccccCCcccCChhhhcCcccccCCCCCCC
Confidence 368999999999751 22222222233343334456678999888876
Q ss_pred -CceEEECCCCCHHHHHHhhcccccCCcccHH----HHHHHHHHHhcccCCCCCCeEEEEEe-cCCC------------C
Q 015543 58 -GVRVLTTPTTDLGKILACMHELDIGGEMNIA----AGIQVAQLALKHRQNKNQRQRIIVFA-GSPV------------K 119 (405)
Q Consensus 58 -~~~vLvtlT~D~~kils~L~~l~~~G~~sL~----~gL~iA~lALKhr~~k~~~~RIVvFv-gSpi------------~ 119 (405)
+.+-..+||.|..++.+.+++..+.|+.+.. .||..|..-=++..-+....|||||+ +++. .
T Consensus 178 ~~f~~~l~Lt~~~~~F~~~v~~~~is~n~D~PEgg~dal~Qa~vC~~~igWr~~a~~llv~~TD~~fH~agDg~l~gi~~ 257 (426)
T PF00362_consen 178 FSFRHVLSLTDDITEFNEEVNKQKISGNLDAPEGGLDALMQAAVCQEEIGWRNEARRLLVFSTDAGFHFAGDGKLAGIVK 257 (426)
T ss_dssp -SEEEEEEEES-HHHHHHHHHTS--B--SSSSBSHHHHHHHHHH-HHHHT--STSEEEEEEEESS-B--TTGGGGGT--S
T ss_pred eeeEEeecccchHHHHHHhhhhccccCCCCCCccccchheeeeecccccCcccCceEEEEEEcCCccccccccccceeee
Confidence 3345667888999999999998887754433 33333333223332345677888876 2211 0
Q ss_pred -------------------CChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCC
Q 015543 120 -------------------YDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGP 177 (405)
Q Consensus 120 -------------------~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~ 177 (405)
.|=-.+-.+.++|.++||.+- ...-. ....+.+.|.+.+ .+|.+..+-...
T Consensus 258 pnd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~~i~~I-FAVt~---~~~~~Y~~L~~~i---~~s~vg~L~~dS 327 (426)
T PF00362_consen 258 PNDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSENNINPI-FAVTK---DVYSIYEELSNLI---PGSSVGELSSDS 327 (426)
T ss_dssp ---SS--BSTTSBBGGGGCS----HHHHHHHHHHTTEEEE-EEEEG---GGHHHHHHHHHHS---TTEEEEEESTTS
T ss_pred cCCCceEECCCCcccccccccCCCHHHHHHHHHHcCCEEE-EEEch---hhhhHHHHHhhcC---CCceecccccCc
Confidence 012246789999999999543 23332 2356888888877 467777776654
No 94
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=74.28 E-value=9 Score=36.52 Aligned_cols=55 Identities=25% Similarity=0.213 Sum_probs=38.2
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~~n~~~L~~f~~~vn~ 164 (405)
.....|+|+|..... +...+++.++++++. ++.+.++|-|... ..++.+++..+-
T Consensus 177 ~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~----~~~~~~~~~~~~ 234 (355)
T cd03799 177 GEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLR----DELEALIAELGL 234 (355)
T ss_pred CCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccH----HHHHHHHHHcCC
Confidence 345677888876533 567888999999886 6777777766543 477788776643
No 95
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=74.21 E-value=25 Score=33.83 Aligned_cols=58 Identities=21% Similarity=0.341 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC
Q 015543 89 AGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDD 149 (405)
Q Consensus 89 ~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~ 149 (405)
.|..+|+..++.-+... ..|++||.|+-+ +.+|=+-+|+.|+..+..|.|+-.|....
T Consensus 32 AG~aVa~~i~~~~~~~~-~~~v~vlcG~Gn--NGGDG~VaAR~L~~~G~~V~v~~~~~~~~ 89 (203)
T COG0062 32 AGLAVARAILREYPLGR-ARRVLVLCGPGN--NGGDGLVAARHLKAAGYAVTVLLLGDPKK 89 (203)
T ss_pred HHHHHHHHHHHHcCccc-CCEEEEEECCCC--ccHHHHHHHHHHHhCCCceEEEEeCCCCC
Confidence 35667777777644322 455666644443 47788999999999999999999997663
No 96
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=74.12 E-value=56 Score=30.64 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=34.5
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC-CceEEEEEeCCCCCCcHHHHHHHHH
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN-SVAIDIVNFGEDDDGKPEKLEALLA 160 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKkn-nI~VdII~FG~e~~~n~~~L~~f~~ 160 (405)
..+.+|+|+|..... ....+.++++++++. ++.+.++|-|... ..++.++.
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~----~~~~~~~~ 270 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGPEK----EELKELAK 270 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcccH----HHHHHHHH
Confidence 456678888876543 567788888888877 7777777765543 34555544
No 97
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=73.91 E-value=33 Score=33.13 Aligned_cols=54 Identities=26% Similarity=0.254 Sum_probs=36.7
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
...++|+|+|+.... ....+++++++|++. ++.+.|||-|... +.|+.+++..+
T Consensus 186 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~~----~~~~~~~~~~~ 242 (367)
T cd05844 186 RRPPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGPLL----AALEALARALG 242 (367)
T ss_pred CCCcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCchHH----HHHHHHHHHcC
Confidence 345678888876543 455677888888764 6788888765433 46778777643
No 98
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=73.17 E-value=40 Score=31.06 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=36.7
Q ss_pred CCCeEEEEEecCCCCC-ChhHHHHHHHHHHh--CCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 105 NQRQRIIVFAGSPVKY-DRKVMEMIGKKLKK--NSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 105 ~~~~RIVvFvgSpi~~-d~~~l~~~akkLKk--nnI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
....++|+|+|..... ....+.++++++++ .++.+.|+|-|... ..++.++...+
T Consensus 175 ~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~----~~~~~~~~~~~ 232 (348)
T cd03820 175 DLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPER----EALEALIKELG 232 (348)
T ss_pred CCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCH----HHHHHHHHHcC
Confidence 3556788898886543 56678888888874 46777777765543 45666666543
No 99
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=72.77 E-value=30 Score=37.03 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=38.1
Q ss_pred HHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 90 GIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 90 gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
|..+|...+++.+ +...+||+||+|.-+ +.+|=+-+|+.|+..++.|.|+-++...
T Consensus 43 G~ava~~i~~~~~-~~~~~~VlVlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~~~~~~ 98 (462)
T PLN03049 43 GLSVASAIAEVYS-PSEYRRVLALCGPGN--NGGDGLVAARHLHHFGYKPSICYPKRTD 98 (462)
T ss_pred HHHHHHHHHHhcc-cccCCEEEEEECCCC--CHHHHHHHHHHHHHCCCceEEEEECCCC
Confidence 4555655554422 212357776655443 4788889999999999999999988643
No 100
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=72.25 E-value=25 Score=38.67 Aligned_cols=136 Identities=17% Similarity=0.192 Sum_probs=80.1
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhcc-CCcCCcEE----EEEecCCC-ceEEECCCCCH-----HHHH
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQ-SNPENTVG----ILTMGGKG-VRVLTTPTTDL-----GKIL 73 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~-~NPes~VG----lvtmag~~-~~vLvtlT~D~-----~kil 73 (405)
++.|.||+|-||-.. +.-++..+-.|..+..- .++...+| +.++-... +-|.+.--.|+ .++-
T Consensus 448 a~TLLvD~S~St~a~------mdetrRvidl~~eaL~~la~~~qa~gd~~~~~~fts~rr~~vri~tvk~FDes~~~~~~ 521 (637)
T COG4548 448 AFTLLVDVSASTDAK------MDETRRVIDLFHEALLVLAHGHQALGDSEDILDFTSRRRPWVRINTVKDFDESMGETVG 521 (637)
T ss_pred eeEEEeecccchHHH------hhhhhhhHHHHHHHHHHhhchhhhhCCHHHhcCchhhcCcceeeeeeeccccccccccc
Confidence 578999999998642 23334444444443211 23333333 12222211 11222111111 1122
Q ss_pred HhhcccccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCC-CC----hh---HHHHHHHHHHhCCceEEEEEeC
Q 015543 74 ACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK-YD----RK---VMEMIGKKLKKNSVAIDIVNFG 145 (405)
Q Consensus 74 s~L~~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~-~d----~~---~l~~~akkLKknnI~VdII~FG 145 (405)
-.|-.++|+--+..+.||..|..-|-||+ .+++-.|||+++.-+ -| .- +-....-..+|.||.|--|-+.
T Consensus 522 ~RImALePg~ytR~G~AIR~As~kL~~rp--q~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV~eaRk~Gi~VF~Vtld 599 (637)
T COG4548 522 PRIMALEPGYYTRDGAAIRHASAKLMERP--QRQKLLIVLSDGKPNDFDHYEGRFGIEDTREAVIEARKSGIEVFNVTLD 599 (637)
T ss_pred hhheecCccccccccHHHHHHHHHHhcCc--ccceEEEEecCCCcccccccccccchhhHHHHHHHHHhcCceEEEEEec
Confidence 24556788889999999999999999976 466777888866543 23 22 3345567789999999888887
Q ss_pred CCC
Q 015543 146 EDD 148 (405)
Q Consensus 146 ~e~ 148 (405)
.+.
T Consensus 600 ~ea 602 (637)
T COG4548 600 REA 602 (637)
T ss_pred chh
Confidence 654
No 101
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.63 E-value=79 Score=36.46 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=85.1
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceE-----------------------
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRV----------------------- 61 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~v----------------------- 61 (405)
-.+++||.|-+...--| |++.+.++..=+.. .--+|.++||+|++-... ..
T Consensus 296 vy~FliDVS~~a~ksG~----L~~~~~slL~~LD~-lpgd~Rt~igfi~fDs~i-hfy~~~~~~~qp~mm~vsdl~d~fl 369 (887)
T KOG1985|consen 296 VYVFLIDVSISAIKSGY----LETVARSLLENLDA-LPGDPRTRIGFITFDSTI-HFYSVQGDLNQPQMMIVSDLDDPFL 369 (887)
T ss_pred eEEEEEEeehHhhhhhH----HHHHHHHHHHhhhc-CCCCCcceEEEEEeecee-eEEecCCCcCCCceeeecccccccc
Confidence 35789999987643322 23333333333332 225699999999986432 21
Q ss_pred ------EECCCCCHHHHHHhhccc------ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCC--------
Q 015543 62 ------LTTPTTDLGKILACMHEL------DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYD-------- 121 (405)
Q Consensus 62 ------LvtlT~D~~kils~L~~l------~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d-------- 121 (405)
|+++-.-+..|-..|.++ .-.-+..|+.||+.|...+.. ..-||++|..++-+..
T Consensus 370 p~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~~~t~~alGpALkaaf~li~~-----~GGri~vf~s~lPnlG~G~L~~rE 444 (887)
T KOG1985|consen 370 PMPDSLLVPLKECKDLIETLLKTLPEMFQDTRSTGSALGPALKAAFNLIGS-----TGGRISVFQSTLPNLGAGKLKPRE 444 (887)
T ss_pred CCchhheeeHHHHHHHHHHHHHHHHHHHhhccCcccccCHHHHHHHHHHhh-----cCCeEEEEeccCCCCCcccccccc
Confidence 222222122232333333 123367899999999888875 5559999987654311
Q ss_pred --------hhH--------H-HHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015543 122 --------RKV--------M-EMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (405)
Q Consensus 122 --------~~~--------l-~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~ 160 (405)
+.. . .+++-.+.|-+|.||.--|.+.- .-..-|..+.+
T Consensus 445 dp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY-~DlAsLs~Lsk 499 (887)
T KOG1985|consen 445 DPNVRSSDEDSQLLSPATDFYKDLALECSKSQICVDLFLFSEQY-TDLASLSCLSK 499 (887)
T ss_pred ccccccchhhhhccCCCchHHHHHHHHhccCceEEEEEeecccc-cchhhhhcccc
Confidence 111 1 35677889999999999998866 44455555543
No 102
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.19 E-value=13 Score=27.38 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=32.4
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
+|-++|..+...++-+.++.+.|.+.+|+|+.|+.+.
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 5677898888788888899999999999999998865
No 103
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=69.44 E-value=9.6 Score=39.89 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=41.2
Q ss_pred CCCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 015543 105 NQRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (405)
Q Consensus 105 ~~~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~~n~~~L~~f~~~vn~ 164 (405)
.....+|+|+|..... +-..++++++.+++. ++++.|||-|.+...-.+.|+++++..+-
T Consensus 290 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l 352 (475)
T cd03813 290 EKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGL 352 (475)
T ss_pred CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCC
Confidence 3456788999887643 667788888888775 67777777765332234677888877653
No 104
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.76 E-value=14 Score=27.46 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=32.8
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
+|-.+|+.....++-+.++.+.|.+.+|+|+.|+.|.
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 5677898888888999999999999999999998876
No 105
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=68.00 E-value=59 Score=30.95 Aligned_cols=52 Identities=29% Similarity=0.361 Sum_probs=34.1
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
....+|+|+|..... +...+.+++++++ ++.+.|+|=|... ..++.+++..+
T Consensus 189 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~--~~~l~i~G~g~~~----~~~~~~~~~~~ 241 (357)
T cd03795 189 AGRPFFLFVGRLVYYKGLDVLLEAAAALP--DAPLVIVGEGPLE----AELEALAAALG 241 (357)
T ss_pred CCCcEEEEecccccccCHHHHHHHHHhcc--CcEEEEEeCChhH----HHHHHHHHhcC
Confidence 345678888876433 5556667777666 6888888877543 36677665444
No 106
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=67.71 E-value=11 Score=32.69 Aligned_cols=40 Identities=23% Similarity=0.583 Sum_probs=31.7
Q ss_pred eEEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 108 QRIIVFAGSPVKY--DRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 108 ~RIVvFvgSpi~~--d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
++|++|+||+... +..-+..+++.+++.++.+++|.+.+.
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~ 42 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADY 42 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTS
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEecccc
Confidence 5899999999633 455556778888888999999999874
No 107
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=67.05 E-value=66 Score=30.13 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=35.7
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHcCCC
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVNNND 166 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~~n~~~L~~f~~~vn~~d 166 (405)
....+|+|+|..... +...+.++++++++. ++.+.++|-|.. .+.++.+++..+..+
T Consensus 200 ~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~----~~~~~~~~~~~~~~~ 259 (374)
T cd03817 200 EDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPE----REELEELARELGLAD 259 (374)
T ss_pred CCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCch----HHHHHHHHHHcCCCC
Confidence 345677888875433 567788888888874 566666654432 346677766554333
No 108
>PF12257 DUF3608: Protein of unknown function (DUF3608); InterPro: IPR022046 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF00610 from PFAM.
Probab=66.44 E-value=18 Score=36.56 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=48.4
Q ss_pred cccHHHHHHHHHHHhcc----cCCCCCCeEEEEEecCCC--CCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 84 EMNIAAGIQVAQLALKH----RQNKNQRQRIIVFAGSPV--KYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 84 ~~sL~~gL~iA~lALKh----r~~k~~~~RIVvFvgSpi--~~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
.-++..||.+|...+.+ |.-++..+-|||+.-|+- ..|..-+.-+-++|-.++|.||+|++|..
T Consensus 202 ~gNiLEaINlaln~~~~~~idRdl~rTG~~iivITpG~Gvf~Vd~~ll~~T~~rl~~~gi~~DlIcL~~~ 271 (281)
T PF12257_consen 202 KGNILEAINLALNQFDKHYIDRDLRRTGQSIIVITPGTGVFEVDYDLLRLTTQRLLDNGIGIDLICLSKP 271 (281)
T ss_pred cccHHHHHHHHhhhcccccccCcccccCceEEEEcCCCceEEECHHHHHHHHHHHHhcCccEEEEEcCCC
Confidence 56788888888776653 223567788888875554 34777777888999999999999999974
No 109
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=66.11 E-value=27 Score=32.48 Aligned_cols=58 Identities=12% Similarity=0.253 Sum_probs=46.2
Q ss_pred ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
...|+.+...++.+..++.+. +-.+||+|+| ..+..-+++.++..|.+|.+|+++...
T Consensus 89 ~~k~~vDv~la~D~~~l~~~~-----~~D~ivl~Sg------D~DF~p~v~~~~~~G~rv~v~~~~~~~ 146 (181)
T COG1432 89 ITKGDVDVELAVDAMELADKK-----NVDTIVLFSG------DGDFIPLVEAARDKGKRVEVAGIEPMT 146 (181)
T ss_pred ccccCcchhhHHHHHHhhccc-----CCCEEEEEcC------CccHHHHHHHHHHcCCEEEEEecCCcC
Confidence 346889999999999888764 6677888843 235667799999999999999999944
No 110
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.67 E-value=18 Score=26.67 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=32.3
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
+|-++|......++-+.++.+.|++.+|.|+.|+.|.
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4667788887788889999999999999999999875
No 111
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=65.48 E-value=58 Score=30.78 Aligned_cols=43 Identities=9% Similarity=-0.032 Sum_probs=30.9
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhCC--ceEEEEEeCCCC
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNS--VAIDIVNFGEDD 148 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKknn--I~VdII~FG~e~ 148 (405)
..+.+|+|+|..... +...+.++++.+++.+ +.+.++|-+...
T Consensus 193 ~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~ 238 (365)
T cd03809 193 LPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWL 238 (365)
T ss_pred CCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 345678888887543 5678889999999886 777777665443
No 112
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=64.33 E-value=1.6e+02 Score=32.37 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=91.1
Q ss_pred EEEEEeCChhh---cC------CC-CCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCce---EEE--CCCC---
Q 015543 6 TMICIDNSEWM---RN------GD-YSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR---VLT--TPTT--- 67 (405)
Q Consensus 6 ~~IvIDnSesM---rn------gD-~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~---vLv--tlT~--- 67 (405)
.++.||.+-|- ++ -| +.||=++-++.+|-.+|..|-..+-.- -..|+.+.+. |-- .+..
T Consensus 288 f~vgIDfTaSNg~p~~~sSLHyi~p~~~N~Y~~Ai~~vG~~lq~ydsdk~fp---a~GFGakip~~~~vs~~f~ln~~~~ 364 (529)
T KOG1327|consen 288 FTVGIDFTASNGDPRNPSSLHYIDPHQPNPYEQAIRSVGETLQDYDSDKLFP---AFGFGAKIPPDGQVSHEFVLNFNPE 364 (529)
T ss_pred eEEEEEEeccCCCCCCCCcceecCCCCCCHHHHHHHHHhhhhcccCCCCccc---cccccccCCCCcccccceeecCCCC
Confidence 57788887642 22 23 679999999999999999875554444 4445555322 100 1111
Q ss_pred -----CHHHHHH----hhcccccCCcccHHHHHHHHHHHhcccC-CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCc
Q 015543 68 -----DLGKILA----CMHELDIGGEMNIAAGIQVAQLALKHRQ-NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSV 137 (405)
Q Consensus 68 -----D~~kils----~L~~l~~~G~~sL~~gL~iA~lALKhr~-~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI 137 (405)
-..-++. ++-.|++.|.++|.-=|..|..--+.-. ...+=..+||+.++-++ |.+.-.+.+=.+-+.=.
T Consensus 365 ~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~~qY~VLlIitDG~vT-dm~~T~~AIV~AS~lPl 443 (529)
T KOG1327|consen 365 DPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTAGQYHVLLIITDGVVT-DMKETRDAIVSASDLPL 443 (529)
T ss_pred CCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccCCcceEEEEEEeCCccc-cHHHHHHHHHhhccCCe
Confidence 2334554 4556789999998766554433222211 11233455666677665 45556666667788889
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHH
Q 015543 138 AIDIVNFGEDDDGKPEKLEALLA 160 (405)
Q Consensus 138 ~VdII~FG~e~~~n~~~L~~f~~ 160 (405)
.|-|||.|...+ +.++.|..
T Consensus 444 SIIiVGVGd~df---~~M~~lD~ 463 (529)
T KOG1327|consen 444 SIIIVGVGDADF---DMMRELDG 463 (529)
T ss_pred EEEEEEeCCCCH---HHHHHhhc
Confidence 999999998886 67777754
No 113
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=62.85 E-value=39 Score=31.05 Aligned_cols=63 Identities=16% Similarity=0.312 Sum_probs=43.6
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
+|+|+.||.. |-....++.+.|++.+|.+++--.+.+ .+.+.+.+|++..+. .+...+++-.|
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saH--R~p~~l~~~~~~~~~-~~~~viIa~AG 64 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAH--RTPERLLEFVKEYEA-RGADVIIAVAG 64 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TT--TSHHHHHHHHHHTTT-TTESEEEEEEE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEecc--CCHHHHHHHHHHhcc-CCCEEEEEECC
Confidence 5677778763 677888999999999999998666664 478899999988765 33334444344
No 114
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=62.25 E-value=1.5e+02 Score=28.55 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=44.2
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC-CceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCCchhhhhh
Q 015543 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKN-SVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVL 184 (405)
Q Consensus 107 ~~RIVvFvgSpi~~-d~~~l~~~akkLKkn-nI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~~lLsD~l 184 (405)
..++|+|+|..... ....+.++.+.+++. ++.+.++|-|. +.+.++.++...+-.+ ++..+..-++ +.+.+
T Consensus 196 ~~~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~----~~~~~~~~~~~~~~~~--~v~~~g~~~~-~~~~~ 268 (371)
T cd04962 196 GEKVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGP----ERSPAERLARELGLQD--DVLFLGKQDH-VEELL 268 (371)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCc----CHHHHHHHHHHcCCCc--eEEEecCccc-HHHHH
Confidence 45778888876543 566777778877764 56666666553 2356777777654333 2333333332 45555
Q ss_pred hcCcc
Q 015543 185 ISSPV 189 (405)
Q Consensus 185 ~sSpI 189 (405)
..+.+
T Consensus 269 ~~~d~ 273 (371)
T cd04962 269 SIADL 273 (371)
T ss_pred HhcCE
Confidence 55544
No 115
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=61.86 E-value=35 Score=29.55 Aligned_cols=133 Identities=26% Similarity=0.305 Sum_probs=73.0
Q ss_pred CCCCeEEEEEecCCCCC-ChhHHHHHHHHHH---hCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCCch
Q 015543 104 KNQRQRIIVFAGSPVKY-DRKVMEMIGKKLK---KNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNA 179 (405)
Q Consensus 104 k~~~~RIVvFvgSpi~~-d~~~l~~~akkLK---knnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~~l 179 (405)
....+.+|+|+|..... ....++++++.++ ..++.+-|+|.+ .....++.+++..+..++-+++.-.+ ..-
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 85 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG----EYKKELKNLIEKLNLKENIIFLGYVP-DDE 85 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC----CHHHHHHHHHHHTTCGTTEEEEESHS-HHH
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc----cccccccccccccccccccccccccc-ccc
Confidence 44667788888887654 6778888888886 567777777733 34467888888776555555554444 223
Q ss_pred hhhhhhcCccccCC--CCCCCc--hhHHHHhhh-------------cCCCCCCccCCCCCCCHHHHHHHHhcHHHHHHHH
Q 015543 180 LSDVLISSPVFTAD--GEGGSG--FAAAAAAAA-------------AGGVSDFDFGVDPNIDPELALALRVSMEEERARQ 242 (405)
Q Consensus 180 LsD~l~sSpI~~g~--~~~~~~--~~~~~~~~~-------------~~~~~~~efgvDp~~DPELa~ALr~SlEEe~~rq 242 (405)
|.+.+-.+.|+--- .++.+. ..+...|.. ..+..++ =+++..--+|+-+|+.-+.....|+
T Consensus 86 l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~--~~~~~~~~~l~~~i~~~l~~~~~~~ 163 (172)
T PF00534_consen 86 LDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGF--LFDPNDIEELADAIEKLLNDPELRQ 163 (172)
T ss_dssp HHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEE--EESTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeccccccccccccccccccccccceeeccccCCceeeccccceE--EeCCCCHHHHHHHHHHHHCCHHHHH
Confidence 55555555543211 010100 001111100 0011111 1466766789999998887775554
Q ss_pred H
Q 015543 243 E 243 (405)
Q Consensus 243 ~ 243 (405)
.
T Consensus 164 ~ 164 (172)
T PF00534_consen 164 K 164 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 116
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=61.78 E-value=1.2e+02 Score=28.27 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=31.9
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
....+|+|+|+.... ....+.++++++++.++.+.++|-|...
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~ 232 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLEL 232 (359)
T ss_pred CCceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhh
Confidence 455677888886543 5667788888888878888888877654
No 117
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=61.37 E-value=14 Score=37.98 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=38.5
Q ss_pred eEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 015543 108 QRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (405)
Q Consensus 108 ~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~~n~~~L~~f~~~vn~ 164 (405)
...|+|+|..... ....+.+.+++|++. ++.+.|||-|... +.|+++++..+-
T Consensus 222 ~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~----~~l~~~~~~~~l 277 (406)
T PRK15427 222 PLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWE----RRLRTLIEQYQL 277 (406)
T ss_pred CeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhH----HHHHHHHHHcCC
Confidence 3457888887643 566788888888875 5788888877644 478888887653
No 118
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=60.95 E-value=26 Score=24.31 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=30.2
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
+|-++|......++-+.++.+.|.+++|+|+.|+-+.
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 3556788876677888899999999999999998764
No 119
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=60.91 E-value=40 Score=31.55 Aligned_cols=57 Identities=21% Similarity=0.185 Sum_probs=36.7
Q ss_pred CCCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 105 NQRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 105 ~~~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
...+.+|+|+|..... ....+.+++++|++. ++.+.+||-|... ....++.+++..+
T Consensus 200 ~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~--~~~~~~~~~~~~~ 259 (375)
T cd03821 200 LPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGG--YRAELKQIAAALG 259 (375)
T ss_pred CCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcc--hHHHHHHHHHhcC
Confidence 3456678888876543 566788888888884 6777777665443 3345566545443
No 120
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=60.45 E-value=30 Score=36.46 Aligned_cols=64 Identities=23% Similarity=0.289 Sum_probs=48.1
Q ss_pred CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 103 NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 103 ~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
++..++|+||||=+.+.-.|.--+ =|..|.+.|-.|++|||++.. . ++++.+ ..+.|++.+|+=
T Consensus 8 ~~~~k~ra~vvVLGDvGRSPRMqY-HA~Sla~~gf~VdliGy~~s~-p----~e~l~~----hprI~ih~m~~l 71 (444)
T KOG2941|consen 8 NKSKKKRAIVVVLGDVGRSPRMQY-HALSLAKLGFQVDLIGYVESI-P----LEELLN----HPRIRIHGMPNL 71 (444)
T ss_pred cccccceEEEEEecccCCChHHHH-HHHHHHHcCCeEEEEEecCCC-C----hHHHhc----CCceEEEeCCCC
Confidence 567889999999888877665443 456788899999999999986 2 345443 467788888763
No 121
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=60.41 E-value=45 Score=30.70 Aligned_cols=58 Identities=31% Similarity=0.364 Sum_probs=36.2
Q ss_pred CCCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHcCCC
Q 015543 105 NQRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVNNND 166 (405)
Q Consensus 105 ~~~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~~n~~~L~~f~~~vn~~d 166 (405)
......|+|+|+.... +-..+.++++.+++. ++.+.++|-|. ....++.+++..+..+
T Consensus 196 ~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~----~~~~~~~~~~~~~~~~ 256 (374)
T cd03801 196 PEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGP----LREELEALAAELGLGD 256 (374)
T ss_pred cCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcH----HHHHHHHHHHHhCCCc
Confidence 3455678888876543 556778888888876 56666666322 3356666665544333
No 122
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.79 E-value=29 Score=26.44 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=32.5
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
+|-.||. ....++-+.++...|.+.+|+|..|+.|+..
T Consensus 3 ~VsvVG~-~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~ 40 (65)
T cd04918 3 IISLIGN-VQRSSLILERAFHVLYTKGVNVQMISQGASK 40 (65)
T ss_pred EEEEECC-CCCCccHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 6788898 6666777789999999999999999999865
No 123
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=56.32 E-value=1.1e+02 Score=26.60 Aligned_cols=57 Identities=9% Similarity=0.149 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeC
Q 015543 85 MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFG 145 (405)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG 145 (405)
-+...++.+....+. .+..+..+||++|+.-.....++.++++.+++ +.+|-+|+.-
T Consensus 32 ~~~~~~~~~l~~~~~---~~~~~d~vvi~lGtNd~~~~~nl~~ii~~~~~-~~~ivlv~~~ 88 (150)
T cd01840 32 RQMSEAPDLIRQLKD---SGKLRKTVVIGLGTNGPFTKDQLDELLDALGP-DRQVYLVNPH 88 (150)
T ss_pred ccHHHHHHHHHHHHH---cCCCCCeEEEEecCCCCCCHHHHHHHHHHcCC-CCEEEEEECC
Confidence 344566666654433 22356777888888776688999999999964 5777776664
No 124
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=56.02 E-value=1.6e+02 Score=27.37 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=27.9
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCC
Q 015543 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDD 148 (405)
Q Consensus 107 ~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~ 148 (405)
...+|+|+|+.... ....+.+++++|++. ++.+.++|-|...
T Consensus 192 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~ 236 (365)
T cd03807 192 DTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDR 236 (365)
T ss_pred CCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcch
Confidence 34567788886543 566788888888774 5666666655444
No 125
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=55.90 E-value=1.3e+02 Score=33.19 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=35.3
Q ss_pred HHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 90 GIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 90 gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
|..+|...+++.+ +...++|+||.|.-+ +.+|=+.+|+.|+..+..|.|+-.+.
T Consensus 119 G~avA~~I~~~~~-~~~~~~VlVlcGpGN--NGGDGLVaAR~L~~~G~~V~V~~~~~ 172 (544)
T PLN02918 119 GLSVAASIAEVYK-PGEYSRVLAICGPGN--NGGDGLVAARHLHHFGYKPFVCYPKR 172 (544)
T ss_pred HHHHHHHHHHhcc-cccCCEEEEEECCCc--CHHHHHHHHHHHHHCCCceEEEEcCC
Confidence 4555655554422 112356666655443 47788889999999999999977553
No 126
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=55.19 E-value=38 Score=28.81 Aligned_cols=49 Identities=16% Similarity=0.359 Sum_probs=28.2
Q ss_pred ccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 015543 85 MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNF 144 (405)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~F 144 (405)
.+..-++.+...++.+. . ..+||++| . +++.-++++|+..|++|.+|++
T Consensus 79 ~D~~l~~d~~~~~~~~~----~-d~ivLvSg-D-----~Df~~~v~~l~~~g~~V~v~~~ 127 (146)
T PF01936_consen 79 VDVALAVDILELAYENP----P-DTIVLVSG-D-----SDFAPLVRKLRERGKRVIVVGA 127 (146)
T ss_dssp -HHHHHHHHHHHG--GG------SEEEEE---------GGGHHHHHHHHHH--EEEEEE-
T ss_pred cHHHHHHHHHHHhhccC----C-CEEEEEEC-c-----HHHHHHHHHHHHcCCEEEEEEe
Confidence 44444555555555442 2 56665533 2 6789999999999999999996
No 127
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=54.53 E-value=41 Score=31.77 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=35.4
Q ss_pred HHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 90 GIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 90 gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
|..+|...+++.+ ..+||+||.|+-+ +.+|=+.+|+.|+..+|.|.+++...
T Consensus 31 g~~va~~i~~~~~---~~~~v~vl~G~GN--NGGDGlv~AR~L~~~~v~V~~~~~~~ 82 (205)
T TIGR00197 31 GKAVAQAVLQAFP---LAGHVIIFCGPGN--NGGDGFVVARHLKGFGVEVFLLKKEK 82 (205)
T ss_pred HHHHHHHHHHHcC---CCCeEEEEECCCC--CccHHHHHHHHHHhCCCEEEEEccCC
Confidence 4455555555432 2467777766553 46778899999998889888887654
No 128
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=54.40 E-value=18 Score=31.34 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=25.1
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~ 143 (405)
|||++.++|.... .+ ...++++|++.++.|++|-
T Consensus 1 k~i~l~vtGs~~~-~~-~~~~l~~L~~~g~~v~vv~ 34 (129)
T PF02441_consen 1 KRILLGVTGSIAA-YK-APDLLRRLKRAGWEVRVVL 34 (129)
T ss_dssp -EEEEEE-SSGGG-GG-HHHHHHHHHTTTSEEEEEE
T ss_pred CEEEEEEECHHHH-HH-HHHHHHHHhhCCCEEEEEE
Confidence 5788888776543 33 8899999999999998763
No 129
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=53.65 E-value=40 Score=33.03 Aligned_cols=35 Identities=9% Similarity=0.167 Sum_probs=28.1
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015543 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~ 143 (405)
.+||+||.|+-+ +.+|=+-+|+.|...++.|.|+-
T Consensus 60 ~~~V~VlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 60 HPRVLLVCGPGN--NGGDGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CCeEEEEECCCC--CchhHHHHHHHHHHCCCeEEEEE
Confidence 367777766654 46788899999999999999887
No 130
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=52.99 E-value=2e+02 Score=28.16 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=34.1
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC------CceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKN------SVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 107 ~~RIVvFvgSpi~~-d~~~l~~~akkLKkn------nI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
.+.+|+++|..... +...+.++++.+.+. ++.+-+||=|.. .+.++.+++..+
T Consensus 193 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~----~~~~~~~~~~~~ 252 (374)
T TIGR03088 193 ESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPA----RGACEQMVRAAG 252 (374)
T ss_pred CCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCch----HHHHHHHHHHcC
Confidence 35678888877543 566777777777554 466666665443 246788777654
No 131
>PRK10565 putative carbohydrate kinase; Provisional
Probab=52.82 E-value=1.7e+02 Score=31.64 Aligned_cols=40 Identities=8% Similarity=0.169 Sum_probs=30.8
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
..||+||.|+-+ +.+|=+.+|+.|...++.|.|+-++...
T Consensus 60 ~~~v~vl~G~GN--NGGDG~v~AR~L~~~G~~V~v~~~~~~~ 99 (508)
T PRK10565 60 ARHWLVLCGHGN--NGGDGYVVARLAQAAGIDVTLLAQESDK 99 (508)
T ss_pred CCeEEEEEcCCC--chHHHHHHHHHHHHCCCceEEEEECCcc
Confidence 456666655553 3666799999999999999999998644
No 132
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=52.34 E-value=32 Score=33.34 Aligned_cols=71 Identities=17% Similarity=0.088 Sum_probs=46.1
Q ss_pred CCCCCeEEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCCCC-----cHHHHHHHHHHHcCCCCcEEEEecC
Q 015543 103 NKNQRQRIIVFAGSPVKY--DRKVMEMIGKKLKKNSVAIDIVNFGEDDDG-----KPEKLEALLAAVNNNDSSHLVHVPT 175 (405)
Q Consensus 103 ~k~~~~RIVvFvgSpi~~--d~~~l~~~akkLKknnI~VdII~FG~e~~~-----n~~~L~~f~~~vn~~d~Shlv~vp~ 175 (405)
.++...+|++|+||.... +..-+..+++.+...++.|.+|.+..--.. ..+-.+.|.+.+..-| -+|.+-|
T Consensus 22 ~~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~AD--gvii~TP 99 (219)
T TIGR02690 22 HKPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSE--GQVWCSP 99 (219)
T ss_pred CCCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCC--EEEEeCC
Confidence 466778999999999864 445555667777767999999998752211 1234455666665433 3455544
No 133
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=51.47 E-value=2.1e+02 Score=26.83 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=29.0
Q ss_pred eEEEEEecCCCCC-ChhHHHHHHHHHHhC-CceEEEEEeCCCC
Q 015543 108 QRIIVFAGSPVKY-DRKVMEMIGKKLKKN-SVAIDIVNFGEDD 148 (405)
Q Consensus 108 ~RIVvFvgSpi~~-d~~~l~~~akkLKkn-nI~VdII~FG~e~ 148 (405)
+.+|+|+|..... +...+.++++++++. ++.+.|+|-|...
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~ 239 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPAR 239 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCchH
Confidence 5678888875432 556788888888774 7888888866543
No 134
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=51.43 E-value=54 Score=31.22 Aligned_cols=54 Identities=22% Similarity=0.199 Sum_probs=36.7
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
...++|+|+|+.... ....+++.++++++. ++.+.|||-|... +.+++++...+
T Consensus 186 ~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~----~~~~~~~~~~~ 242 (360)
T cd04951 186 NDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLR----ATLERLIKALG 242 (360)
T ss_pred CCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcH----HHHHHHHHhcC
Confidence 346788888876543 556778888888765 6777777765533 46777776654
No 135
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=51.27 E-value=56 Score=30.32 Aligned_cols=53 Identities=30% Similarity=0.336 Sum_probs=34.9
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHH
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAV 162 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~~n~~~L~~f~~~v 162 (405)
...++|+|+|+.... ....+.++++++++. ++.+.|+|-|... ..++.+++..
T Consensus 200 ~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~----~~~~~~~~~~ 255 (377)
T cd03798 200 EDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLR----EALEALAAEL 255 (377)
T ss_pred CCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcch----HHHHHHHHhc
Confidence 456778888876543 566788888888876 5666666655433 4666666544
No 136
>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]
Probab=50.80 E-value=13 Score=37.25 Aligned_cols=36 Identities=36% Similarity=0.512 Sum_probs=28.5
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCcccCCCCCCChHHHHHHHHHccccCC
Q 015543 291 DEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDD 340 (405)
Q Consensus 291 ~~e~~~L~~Al~mS~~~~~~~~~~~~~~~~~~~~ee~~ia~A~~ms~~~~ 340 (405)
+.++.-|++|++||.++. .+||+.+..||+.||+..
T Consensus 216 dq~e~d~a~a~a~s~~et--------------~~ede~lrsaie~s~~~~ 251 (315)
T KOG2935|consen 216 DQDEEDLARALALSRQET--------------EMEDEDLRSAIELSMQSA 251 (315)
T ss_pred ccchHHHHHHHHHHHhhh--------------hcccHHHHHHHHhhhhhh
Confidence 356778999999997653 346679999999999853
No 137
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=50.77 E-value=1.7e+02 Score=32.17 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=48.5
Q ss_pred CCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 105 NQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 105 ~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
+...++.|++||.. |-..+.++++.|++-+|..++--.|.+ -..+.+..|+.+....+-. .+++-.|
T Consensus 408 ~~~~~v~i~~gs~s--d~~~~~~~~~~l~~~g~~~~~~v~sah--r~~~~~~~~~~~~~~~~~~-v~i~~ag 474 (577)
T PLN02948 408 KGTPLVGIIMGSDS--DLPTMKDAAEILDSFGVPYEVTIVSAH--RTPERMFSYARSAHSRGLQ-VIIAGAG 474 (577)
T ss_pred CCCCeEEEEECchh--hHHHHHHHHHHHHHcCCCeEEEEECCc--cCHHHHHHHHHHHHHCCCC-EEEEEcC
Confidence 34556778888864 678889999999999999887666664 4788999998877544333 3333344
No 138
>PRK15045 cellulose biosynthesis protein BcsE; Provisional
Probab=50.53 E-value=1.6e+02 Score=32.32 Aligned_cols=127 Identities=13% Similarity=0.160 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCcccHHHHHHHHHHHhcccCCCCCCe
Q 015543 29 QADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQ 108 (405)
Q Consensus 29 q~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~ 108 (405)
|.||.-..=+-...+.....|.+|+|+++ ++.+.++..+.|. .++.+.--+.=..||.-=..=|.+ .-+.+.
T Consensus 32 ~~Da~~l~~Q~i~~q~~~~r~alI~~~~~-~~~ll~l~~~~gp-----~~l~lf~lp~~~~al~~l~~dl~~--~~~~~~ 103 (519)
T PRK15045 32 HEDAISLANQTIASQAETAHVAVISMDSD-PAKIFQLDDSQGP-----EKIRLFSMPNHEKGLYYLPRDLQC--SIDPHN 103 (519)
T ss_pred hhhHHHHHHHHHHhCCCCCeEEEEecCCC-hHHhhcCcccCCC-----ceeeeeecCCCHHHHHHhhHHHhh--ccCCCC
Confidence 45544332222344777888999998877 4444334332111 111111111112232222222222 234667
Q ss_pred EEEEEecCCCC---CChhH----HHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 109 RIIVFAGSPVK---YDRKV----MEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 109 RIVvFvgSpi~---~d~~~----l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
|.+||.+.... -...+ +.++.+-+++.+..+-||+.|...+.-...|-.+.+.+.
T Consensus 104 ~l~il~~~~~~w~~~~~~~l~~wl~~l~~w~~~~~~tLLvI~~g~~~~~~~~~L~~~~r~l~ 165 (519)
T PRK15045 104 YLFILVCANNAWQNIPAERLRSWLDKMNKWSRLNHCSLLVINPGNNNDKQFSLLMEEYRSLF 165 (519)
T ss_pred cEEEEEccHHHhhcCCHHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhhHHHHHHhhhhcc
Confidence 78888655442 23333 455666678899999999999988311344555544443
No 139
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=50.25 E-value=47 Score=25.65 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=31.1
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
+|-++|.....+++-+.++.+.|.+.+|.++.|+.+.
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 4556687777778888899999999999999999874
No 140
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=50.10 E-value=51 Score=30.93 Aligned_cols=55 Identities=13% Similarity=0.228 Sum_probs=40.1
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
++|+|||..-..=--.+.|+|..+++++-+|-+|+.-.---.-.+-|+.+++.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhc
Confidence 5788888775433346889999999999999999987643244678999998885
No 141
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.66 E-value=45 Score=24.05 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=28.0
Q ss_pred EEEecCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 015543 111 IVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNF 144 (405)
Q Consensus 111 VvFvgSpi~~d~~~l~~~akkLKknnI~VdII~F 144 (405)
|-++|..+...++-+.++.+.|.+.+|+|+.|+.
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc
Confidence 5566777766778888999999999999999984
No 142
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=48.39 E-value=49 Score=23.46 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=29.7
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
+|-++|......++-+.++.+.|.+.+|+|+.|+-+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 3556687776677778899999999999999887754
No 143
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=47.91 E-value=95 Score=34.88 Aligned_cols=95 Identities=16% Similarity=0.069 Sum_probs=58.5
Q ss_pred eEEEEEeCChhhcCCCCC-CcHHHHHHHHHHHHHHhhccCCcC--CcEEEEEecCCCceEEECCCCCHHHHHHhhcccc-
Q 015543 5 ATMICIDNSEWMRNGDYS-PSRLRAQADAVSLICGAKTQSNPE--NTVGILTMGGKGVRVLTTPTTDLGKILACMHELD- 80 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~-PtRl~Aq~dAv~~fv~~k~~~NPe--s~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~- 80 (405)
.+.++||.|.||...-+. -|=|..++.||+.|+...++-.-+ ...=++|+..--..|-+-.-.....++.-|+++.
T Consensus 3 i~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~~~~~~~a~~~~eik~l~a 82 (888)
T KOG3768|consen 3 IFLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKVACEKLGAVVIEEIKKLHA 82 (888)
T ss_pred eEEEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhhHHhhcccHHHHHHHhhcC
Confidence 468899999999988877 467889999999999976652111 1122222222111111222233444566666664
Q ss_pred cCCcccHHHHHHHHHHHhc
Q 015543 81 IGGEMNIAAGIQVAQLALK 99 (405)
Q Consensus 81 ~~G~~sL~~gL~iA~lALK 99 (405)
+.|.+-+++++--|-..|.
T Consensus 83 ~~~s~~~~~~~t~AFdlLn 101 (888)
T KOG3768|consen 83 PYGSCQLHHAITEAFDLLN 101 (888)
T ss_pred ccchhhhhHHHHHHhhhhh
Confidence 4677888888877766554
No 144
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=47.90 E-value=2.4e+02 Score=26.32 Aligned_cols=119 Identities=14% Similarity=0.181 Sum_probs=62.0
Q ss_pred HHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcc-------------------------c-----ccC
Q 015543 33 VSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHE-------------------------L-----DIG 82 (405)
Q Consensus 33 v~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~-------------------------l-----~~~ 82 (405)
+..|+..+-.+|+.-+|+|+.=+...+. .....|...|+..+.. . ...
T Consensus 9 ~~~~~~~~~~~~~~~riAvfID~~Nv~~--~~~~~d~~~i~~~ls~~G~i~~~R~Y~~a~a~~~l~~~l~~~Gf~pv~~k 86 (160)
T TIGR00288 9 LKEYISIKKKRKGEKKIGLLVDGPNMLR--KEFNIDLDEIREILSEYGDIKIGKVLLNQYASDKLIEAVVNQGFEPIIVA 86 (160)
T ss_pred hhhheEeccccCCCCcEEEEEeCCccCh--hhhccCHHHHHHHHHhcCCeEEEEEEechhccHHHHHHHHHCCceEEEec
Confidence 3445555666777778888887665431 1112344444443331 1 124
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 015543 83 GEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (405)
Q Consensus 83 G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~v 162 (405)
|.+++.-+|.+-.++.. ..--.+|++ .| .++..-++.+|+..|++|.+||+..-. . ..|.++.
T Consensus 87 G~~Dv~laIDame~~~~-----~~iD~~vLv-Sg-----D~DF~~Lv~~lre~G~~V~v~g~~~~t---s---~~L~~ac 149 (160)
T TIGR00288 87 GDVDVRMAVEAMELIYN-----PNIDAVALV-TR-----DADFLPVINKAKENGKETIVIGAEPGF---S---TALQNSA 149 (160)
T ss_pred CcccHHHHHHHHHHhcc-----CCCCEEEEE-ec-----cHhHHHHHHHHHHCCCEEEEEeCCCCC---h---HHHHHhc
Confidence 54444444443222211 123334444 33 346778999999999988777753322 1 4455544
Q ss_pred cCCCCcEEEEecC
Q 015543 163 NNNDSSHLVHVPT 175 (405)
Q Consensus 163 n~~d~Shlv~vp~ 175 (405)
++|+.+.+
T Consensus 150 -----d~FI~L~~ 157 (160)
T TIGR00288 150 -----DIAIILGE 157 (160)
T ss_pred -----CeEEeCCC
Confidence 26766654
No 145
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=47.57 E-value=2.1e+02 Score=27.94 Aligned_cols=53 Identities=19% Similarity=0.321 Sum_probs=35.5
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 107 ~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
....|+|+|..... ....+.++.+++++. ++++.|+|.|... ..++.+++..+
T Consensus 203 ~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~----~~~~~~~~~~~ 258 (372)
T cd04949 203 KPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEE----EKLKELIEELG 258 (372)
T ss_pred CCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCchH----HHHHHHHHHcC
Confidence 34567888876433 455677777777654 6888999988754 36677766544
No 146
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=47.23 E-value=52 Score=23.71 Aligned_cols=34 Identities=12% Similarity=0.278 Sum_probs=27.8
Q ss_pred EEEecCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 015543 111 IVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNF 144 (405)
Q Consensus 111 VvFvgSpi~~d~~~l~~~akkLKknnI~VdII~F 144 (405)
|-++|..+...++-+.++...|.+.+|+|+.|+.
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 5566776666777888999999999999999984
No 147
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=46.55 E-value=59 Score=28.13 Aligned_cols=78 Identities=17% Similarity=0.262 Sum_probs=48.6
Q ss_pred CHHHHHHhhcccc------c-------CCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHh
Q 015543 68 DLGKILACMHELD------I-------GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKK 134 (405)
Q Consensus 68 D~~kils~L~~l~------~-------~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKk 134 (405)
...+....|+... + ....++.-++.+..++..+ ....|||++| . .+..-++++|++
T Consensus 53 ~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~-----~~d~ivLvSg-D-----~Df~~~i~~lr~ 121 (149)
T cd06167 53 RQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKR-----RIDTIVLVSG-D-----SDFVPLVERLRE 121 (149)
T ss_pred hHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhc-----CCCEEEEEEC-C-----ccHHHHHHHHHH
Confidence 4566677776541 1 1346666555555555443 4456666643 2 378899999999
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHH
Q 015543 135 NSVAIDIVNFGEDDDGKPEKLEALL 159 (405)
Q Consensus 135 nnI~VdII~FG~e~~~n~~~L~~f~ 159 (405)
.|++|-++++.... ...|+..|
T Consensus 122 ~G~~V~v~~~~~~~---s~~L~~~~ 143 (149)
T cd06167 122 LGKRVIVVGFEAKT---SRELRKAA 143 (149)
T ss_pred cCCEEEEEccCccC---hHHHHHhC
Confidence 99999999998433 23454443
No 148
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=46.46 E-value=55 Score=25.17 Aligned_cols=39 Identities=10% Similarity=0.045 Sum_probs=33.2
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
-+|..||.... .++-+.++.+.|.+++|+|..|+.|+..
T Consensus 3 a~VsvVG~gm~-~~gv~~ki~~~L~~~~I~v~~i~~~~s~ 41 (66)
T cd04915 3 AIVSVIGRDLS-TPGVLARGLAALAEAGIEPIAAHQSMRN 41 (66)
T ss_pred EEEEEECCCCC-cchHHHHHHHHHHHCCCCEEEEEecCCe
Confidence 46888898885 6777789999999999999999999854
No 149
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=45.70 E-value=90 Score=29.87 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=35.1
Q ss_pred CCCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 105 NQRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 105 ~~~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
...+.+|+|+|..... .-..+.+++++|++. ++.+.|||=|.. ...++.+++..+
T Consensus 189 ~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~----~~~~~~~~~~~~ 246 (358)
T cd03812 189 LEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGEL----EEEIKKKVKELG 246 (358)
T ss_pred CCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCch----HHHHHHHHHhcC
Confidence 3456778888886543 556788888898876 555555553332 246777766443
No 150
>PF01882 DUF58: Protein of unknown function DUF58; InterPro: IPR002881 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain (see IPR002035 from INTERPRO).
Probab=43.83 E-value=51 Score=26.09 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=34.7
Q ss_pred ceEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCC
Q 015543 4 EATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSN 44 (405)
Q Consensus 4 Ea~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~N 44 (405)
..++|++|.+.+|..+.-....++....++..++....+++
T Consensus 41 ~~~~i~ld~~~~~~~~~~~~~~~e~~l~~a~~l~~~~~~~g 81 (86)
T PF01882_consen 41 QPVWIVLDLSPSMYFGSNGRSKFERALSAAASLANQALRQG 81 (86)
T ss_pred CcEEEEEECCCccccCcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35789999999999998889999999998888888765543
No 151
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=43.49 E-value=96 Score=31.21 Aligned_cols=55 Identities=20% Similarity=0.059 Sum_probs=36.3
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhCC--ceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNS--VAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKknn--I~VdII~FG~e~~~n~~~L~~f~~~vn~ 164 (405)
..+.+|+|+|..... ....+.++++.|++.+ +.+-|+|-|.. .+.|+++++..+.
T Consensus 191 ~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~----~~~l~~~~~~~~l 248 (398)
T cd03796 191 NDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPK----RILLEEMREKYNL 248 (398)
T ss_pred CCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCch----HHHHHHHHHHhCC
Confidence 356688888876543 5667888888887654 55555554432 3578888887654
No 152
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=43.10 E-value=24 Score=34.18 Aligned_cols=29 Identities=31% Similarity=0.644 Sum_probs=25.5
Q ss_pred cCCHHHHHHHHhcCC--------------CCCCC-CHHHHHHHH
Q 015543 354 LGDQSFVSSILTSLP--------------GVDPN-DPSVKDLIA 382 (405)
Q Consensus 354 ~~d~~fl~svl~~lp--------------gvdpn-~~~i~~~~~ 382 (405)
.-.|+||..+|...| ||||| ||.+-.||+
T Consensus 172 ~P~p~ll~~~~~~spig~g~~g~~~~~e~gvDp~lDpELA~Alr 215 (243)
T COG5148 172 PPNPELLDRVLPFSPIGQGVVGDDLQLEYGVDPNLDPELAEALR 215 (243)
T ss_pred CCCHHHHHhhccCCccccccccCccceecCCCCCCCHHHHHHHH
Confidence 357999999999988 69999 999988886
No 153
>PF10293 DUF2405: Domain of unknown function (DUF2405); InterPro: IPR019409 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a conserved region found within FMP27.
Probab=42.19 E-value=40 Score=31.00 Aligned_cols=28 Identities=32% Similarity=0.572 Sum_probs=23.4
Q ss_pred CCCCCH---HHHHHHHhcHHHHHHHHHHHHH
Q 015543 220 DPNIDP---ELALALRVSMEEERARQEAAAK 247 (405)
Q Consensus 220 Dp~~DP---ELa~ALr~SlEEe~~rq~~~~~ 247 (405)
.-++|| +|.|..|+-+.|+|+|.++++.
T Consensus 112 ~~eDDPFE~~L~~Iy~lGl~Eq~~Rl~r~~~ 142 (157)
T PF10293_consen 112 ELEDDPFESELGMIYRLGLDEQRERLEREEA 142 (157)
T ss_pred EEeCCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345666 9999999999999999887764
No 154
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=42.05 E-value=2.9e+02 Score=28.41 Aligned_cols=77 Identities=21% Similarity=0.325 Sum_probs=53.8
Q ss_pred ccCCcccHHHHHHHHH--HHhcccCCCCCCeEEEEEecCCCCC---ChhHH----HHHHHHHHhCCceEEEEEeCCCCCC
Q 015543 80 DIGGEMNIAAGIQVAQ--LALKHRQNKNQRQRIIVFAGSPVKY---DRKVM----EMIGKKLKKNSVAIDIVNFGEDDDG 150 (405)
Q Consensus 80 ~~~G~~sL~~gL~iA~--lALKhr~~k~~~~RIVvFvgSpi~~---d~~~l----~~~akkLKknnI~VdII~FG~e~~~ 150 (405)
.+.|.++=.+.-..|- .+.||+. +..++|+-||||++... .+... .-+.|.|.+.++++ +|+|+-...
T Consensus 133 pi~Gs~h~Vt~~~lAa~~e~~~~~~-p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~-lisfSRRTp- 209 (329)
T COG3660 133 PINGSPHNVTSQRLAALREAFKHLL-PLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSF-LISFSRRTP- 209 (329)
T ss_pred eccCCCCcccHHHhhhhHHHHHhhC-CCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceE-EEEeecCCc-
Confidence 5677777666655553 5778875 78999999999999852 23333 34456677788887 678987663
Q ss_pred cHHHHHHHHHH
Q 015543 151 KPEKLEALLAA 161 (405)
Q Consensus 151 n~~~L~~f~~~ 161 (405)
+.++.++.+
T Consensus 210 --~~~~s~l~~ 218 (329)
T COG3660 210 --DTVKSILKN 218 (329)
T ss_pred --HHHHHHHHh
Confidence 567777664
No 155
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=41.37 E-value=1.8e+02 Score=30.85 Aligned_cols=151 Identities=17% Similarity=0.145 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEEC--CC---------------CCHHH---HHHhhcc-c-----c
Q 015543 27 RAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTT--PT---------------TDLGK---ILACMHE-L-----D 80 (405)
Q Consensus 27 ~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvt--lT---------------~D~~k---ils~L~~-l-----~ 80 (405)
+-++.-+..+++.-.-+---+.|-+|.=+|.+-.+|+. +. +.... .+..|-. + .
T Consensus 30 ~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~ 109 (408)
T KOG2228|consen 30 QDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNR 109 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhh
Confidence 44455566666665556666777777777776555542 11 11111 1111110 0 0
Q ss_pred -cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCC----C-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHH
Q 015543 81 -IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK----Y-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEK 154 (405)
Q Consensus 81 -~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~----~-d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~ 154 (405)
..-.-+|..-|.--.++|||+.. +++--|+|+--.+. . ..--++.+-+.-.....+|.|||.-..-+ +
T Consensus 110 ~~k~~gsfte~l~~lL~~L~~~~~--~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld----~ 183 (408)
T KOG2228|consen 110 IVKSFGSFTENLSKLLEALKKGDE--TTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD----I 183 (408)
T ss_pred hheeecccchhHHHHHHHHhcCCC--CCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc----H
Confidence 01123455556666778998643 33333555543322 1 23356777888888999999999999884 8
Q ss_pred HHHHHHHHcCCCCcEEEEecCCCchhhhhh
Q 015543 155 LEALLAAVNNNDSSHLVHVPTGPNALSDVL 184 (405)
Q Consensus 155 L~~f~~~vn~~d~Shlv~vp~g~~lLsD~l 184 (405)
++.+=++|.+ -.||-++-..++--|.|.+
T Consensus 184 lE~LEKRVKS-RFshr~I~m~~~~~l~~yv 212 (408)
T KOG2228|consen 184 LELLEKRVKS-RFSHRVIFMLPSLPLGDYV 212 (408)
T ss_pred HHHHHHHHHh-hcccceeeccCCCChHHHH
Confidence 8888778864 6789855544432366655
No 156
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=41.10 E-value=3.1e+02 Score=25.78 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=28.4
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCC
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGE 146 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~ 146 (405)
....+|+|+|+.... ....+++.++++++. ++.+.|+|-|.
T Consensus 183 ~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~ 226 (366)
T cd03822 183 DGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETH 226 (366)
T ss_pred CCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCc
Confidence 346778888877543 566788888888886 56666666554
No 157
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=40.58 E-value=1.4e+02 Score=26.95 Aligned_cols=38 Identities=18% Similarity=0.474 Sum_probs=26.1
Q ss_pred EEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 109 RIIVFAGSPVKY--DRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 109 RIVvFvgSpi~~--d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
+|+++.|||... +..-+..+++.++..+..+.+|.+..
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~~~~~~idl~~ 40 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVRD 40 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHCCCeEEEEEecC
Confidence 478888999643 23334455667777788888888764
No 158
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=39.17 E-value=1.6e+02 Score=25.35 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=40.8
Q ss_pred HHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEe
Q 015543 94 AQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHV 173 (405)
Q Consensus 94 A~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~v 173 (405)
-...|+.+ ...++-.||++|.. ..+..=.....|.+++-||.+.++-|.+.. . .+-+...++.+|.+.+=|=+.|
T Consensus 19 ~i~~l~~~--~~~P~Laii~vg~d-~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~-~-~~el~~~i~~lN~D~~V~GIlv 93 (117)
T PF00763_consen 19 EIEKLKEK--GITPKLAIILVGDD-PASISYVRSKQKAAEKLGIEFELIELPEDI-S-EEELLELIEKLNEDPSVHGILV 93 (117)
T ss_dssp HHHHHHHC--T---EEEEEEES---HHHHHHHHHHHHHHHHHT-EEEEEEE-TTS-S-HHHHHHHHHHHHH-TT-SEEEE
T ss_pred HHHHHHhc--CCCcEEEEEecCCC-hhHHHHHHHHHHHHHHcCCceEEEECCCCc-C-HHHHHHHHHHHhCCCCCCEEEE
Confidence 33445543 23344444554443 222223446688999999999999998777 3 4566666788987765454333
No 159
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=38.70 E-value=53 Score=25.86 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=28.0
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 015543 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNF 144 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~F 144 (405)
.++||++.+.. ....+-..++.++|.+.++.|.++.|
T Consensus 43 ~~~vii~~D~D-~aG~~a~~~~~~~l~~~g~~~~~~~~ 79 (79)
T cd03364 43 AKEVILAFDGD-EAGQKAALRALELLLKLGLNVRVLTL 79 (79)
T ss_pred CCeEEEEECCC-HHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 57788887766 22344577899999999999999864
No 160
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=37.94 E-value=68 Score=26.86 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=26.5
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
|+++..++ ...+..+++.|++.|+.|++|+++...
T Consensus 2 Il~i~~~~----~~~~~~~~~~L~~~g~~V~ii~~~~~~ 36 (139)
T PF13477_consen 2 ILLIGNTP----STFIYNLAKELKKRGYDVHIITPRNDY 36 (139)
T ss_pred EEEEecCc----HHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 45554334 456889999999999999999996543
No 161
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=37.90 E-value=1.8e+02 Score=27.08 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=27.0
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceE
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAI 139 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~V 139 (405)
..+|+|+++....+++.+.++.+.+.+.++.+
T Consensus 94 g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 125 (243)
T PLN02726 94 GDFVVIMDADLSHHPKYLPSFIKKQRETGADI 125 (243)
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcE
Confidence 46899999998889999999999988776644
No 162
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.87 E-value=85 Score=24.00 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=33.3
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~v 162 (405)
++|+|.| .+...+.++.+.+|+.+|.+.+-+.=++. +-.=.++.|++.+
T Consensus 2 ~~ll~~g----~~~~el~~~l~~~r~~~~~~~~kAvlT~t-N~~Wt~~~L~~El 50 (58)
T PF12646_consen 2 EFLLFSG----FSGEELDKFLDALRKAGIPIPLKAVLTPT-NINWTLKDLLEEL 50 (58)
T ss_pred CEEEECC----CCHHHHHHHHHHHHHcCCCcceEEEECCC-cccCcHHHHHHHH
Confidence 4666733 25778999999999999977776666665 3334455555543
No 163
>PRK06756 flavodoxin; Provisional
Probab=37.58 E-value=52 Score=28.79 Aligned_cols=39 Identities=8% Similarity=0.275 Sum_probs=31.8
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
++|+||.+|....++.-...+++.|++.++.|+++.+..
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~ 40 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMD 40 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhc
Confidence 367777788866677777888999999999999988754
No 164
>PLN02235 ATP citrate (pro-S)-lyase
Probab=37.46 E-value=2.7e+02 Score=29.81 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=70.0
Q ss_pred hhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHH----hhcccccCCcccHHHHHHHHHHHhcccC-CCCCCeEEEEE
Q 015543 39 AKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILA----CMHELDIGGEMNIAAGIQVAQLALKHRQ-NKNQRQRIIVF 113 (405)
Q Consensus 39 ~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils----~L~~l~~~G~~sL~~gL~iA~lALKhr~-~k~~~~RIVvF 113 (405)
.|+--+|..+||+|+-+++. +--|-|.-+++- --+-+.++|+++-..--+.+...|.-.. +++.+..+|.+
T Consensus 262 ~y~~v~ldG~Ig~mvnGAGl----amaTmD~I~~~G~~g~pANFlDvGG~a~~e~v~~a~~iil~~~~~~~~vk~ilvnI 337 (423)
T PLN02235 262 KFTVLNPKGRIWTMVAGGGA----SVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATANPDGRKRALLI 337 (423)
T ss_pred ceEEeCCCCeEEEEecCcHH----HHHHHHHHHHcCCCCCCceeeecCCCCCHHHHHHHHHHHHhhhhcCCCCcEEEEEE
Confidence 34456888999999887663 222223333222 1112467888776555555555552110 33444444444
Q ss_pred ecCCCCCCh-----hHHHHHHHHHH----hCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCCchhhhhh
Q 015543 114 AGSPVKYDR-----KVMEMIGKKLK----KNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVL 184 (405)
Q Consensus 114 vgSpi~~d~-----~~l~~~akkLK----knnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~~lLsD~l 184 (405)
.|+-..||. .-+.+..+.++ ..+|+|-| -++. .|.+.=.++++.+-...+-.+.+..|..+ |.|++
T Consensus 338 fGGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivV-Rl~G---tN~eeG~~il~e~~~~~gl~i~~~~~~~~-m~~a~ 412 (423)
T PLN02235 338 GGGIANFTDVAATFNGIIRALREKESKLKAARMHIFV-RRGG---PNYQKGLAKMRALGEEIGVPIEVYGPEAT-MTGIC 412 (423)
T ss_pred ecccccchhhhhhhhHHHHHHHHhhhccccCCccEEE-ECCC---CCHHHHHHHHHHhHHhcCCcEEEeCCCCC-HHHHH
Confidence 466656653 34555555543 36788844 4443 44455555555331111223455555544 66655
No 165
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=37.43 E-value=2.3e+02 Score=28.03 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=40.5
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCC-CcHHHHHHHHHHHcCCCCcEEEEe
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDD-GKPEKLEALLAAVNNNDSSHLVHV 173 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~-~n~~~L~~f~~~vn~~d~Shlv~v 173 (405)
..+.+|+|+|.-... ....+.++.+.+++. ++.+-|||-|.... +....++.+.+..+..+.-+++..
T Consensus 188 ~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 259 (372)
T cd03792 188 PERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTL 259 (372)
T ss_pred CCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEec
Confidence 456788888876543 556677777777654 67888888775421 123345666654443344444433
No 166
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=37.18 E-value=95 Score=26.57 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=17.4
Q ss_pred CChhHHHHHHHHHHhCCceEEEEE
Q 015543 120 YDRKVMEMIGKKLKKNSVAIDIVN 143 (405)
Q Consensus 120 ~d~~~l~~~akkLKknnI~VdII~ 143 (405)
.+...+.++++.+|+.+.+|-+|.
T Consensus 73 ~t~~~~~~~~~~~~~~~~~vi~it 96 (153)
T cd05009 73 RLEEKLESLIKEVKARGAKVIVIT 96 (153)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEEe
Confidence 345568889999999987655553
No 167
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=36.65 E-value=3.6e+02 Score=28.93 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=68.2
Q ss_pred ceEEEE-EeCChhhcCCCCCCcHHHHHHHHHHH---HHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc
Q 015543 4 EATMIC-IDNSEWMRNGDYSPSRLRAQADAVSL---ICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL 79 (405)
Q Consensus 4 Ea~~Iv-IDnSesMrngD~~PtRl~Aq~dAv~~---fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l 79 (405)
.||||| .|.|.||... .++.++. ++..|+..+.++ |=|+-++-..-..-|+ . ......
T Consensus 246 ~AVv~~lmDvSGSM~~~---------~K~lak~ff~~l~~fL~~~Y~~-Ve~vfI~H~t~A~EVd------E--e~FF~~ 307 (421)
T PF04285_consen 246 NAVVFCLMDVSGSMGEF---------KKDLAKRFFFWLYLFLRRKYEN-VEIVFIRHHTEAKEVD------E--EEFFHS 307 (421)
T ss_pred cEEEEEEEeCCCCCchH---------HHHHHHHHHHHHHHHHHhccCc-eEEEEEeecCceEEec------H--HHhccc
Confidence 467776 4999999742 2222222 234455667774 7777666543111111 1 222334
Q ss_pred ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCC---CChhHHHHHHH-HHHhCCceEEEEEeCC
Q 015543 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK---YDRKVMEMIGK-KLKKNSVAIDIVNFGE 146 (405)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~---~d~~~l~~~ak-kLKknnI~VdII~FG~ 146 (405)
.-+|+|-+..|++.|...+..|-++..= -|=+|-.|.-. .|.....++.+ +|-. .|..+++++
T Consensus 308 ~esGGT~vSSA~~l~~~ii~erypp~~w-NiY~~~~SDGDN~~~D~~~~~~ll~~~llp---~~~~f~Y~E 374 (421)
T PF04285_consen 308 RESGGTRVSSAYELALEIIEERYPPSDW-NIYVFHASDGDNWSSDNERCVELLEEELLP---VCNYFGYGE 374 (421)
T ss_pred CCCCCeEehHHHHHHHHHHHhhCChhhc-eeeeEEcccCccccCCCHHHHHHHHHHHHH---hcCeEEEEE
Confidence 4579999999999999999987543333 45555544442 35555555544 4322 134445554
No 168
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=36.33 E-value=98 Score=28.74 Aligned_cols=108 Identities=22% Similarity=0.212 Sum_probs=62.5
Q ss_pred EEEEecCCCceEEECCCCCHHHHHHhhcccccCCc-ccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHH
Q 015543 50 GILTMGGKGVRVLTTPTTDLGKILACMHELDIGGE-MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMI 128 (405)
Q Consensus 50 Glvtmag~~~~vLvtlT~D~~kils~L~~l~~~G~-~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~ 128 (405)
|||..+|.+ +.+-|+|.+.-|- -+.+.|. +=|..-|... .. ..-++||+++... ....+...
T Consensus 2 avIla~G~G-tRl~plt~~~pK~-----ll~i~g~~pli~~~l~~l----~~----~g~~~ii~V~~~~---~~~~i~~~ 64 (248)
T PF00483_consen 2 AVILAGGKG-TRLRPLTDTIPKP-----LLPIGGKYPLIDYVLENL----AN----AGIKEIIVVVNGY---KEEQIEEH 64 (248)
T ss_dssp EEEEEESCC-GGGTTTTTTSSGG-----GSEETTEEEHHHHHHHHH----HH----TTCSEEEEEEETT---THHHHHHH
T ss_pred EEEECCCCC-ccCchhhhccccc-----cceecCCCcchhhhhhhh----cc----cCCceEEEEEeec---cccccccc
Confidence 577778876 7788888765441 1355677 6555544433 22 3455655554433 35567777
Q ss_pred HHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCC-CcEEEEecC
Q 015543 129 GKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND-SSHLVHVPT 175 (405)
Q Consensus 129 akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d-~Shlv~vp~ 175 (405)
++...+.++.|.+|.-.... ....-+......+...+ ...+++++.
T Consensus 65 ~~~~~~~~~~i~~i~~~~~~-Gta~al~~a~~~i~~~~~~~~~lv~~g 111 (248)
T PF00483_consen 65 LGSGYKFGVKIEYIVQPEPL-GTAGALLQALDFIEEEDDDEDFLVLNG 111 (248)
T ss_dssp HTTSGGGTEEEEEEEESSSS-CHHHHHHHTHHHHTTSEE-SEEEEETT
T ss_pred ccccccccccceeeeccccc-chhHHHHHHHHHhhhccccceEEEEec
Confidence 77777777888888766655 44445555555554322 223555543
No 169
>COG4907 Predicted membrane protein [Function unknown]
Probab=36.24 E-value=17 Score=39.20 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=18.6
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHcCC--CCcEEEEecCC
Q 015543 139 IDIVNFGEDDDGKPEKLEALLAAVNNN--DSSHLVHVPTG 176 (405)
Q Consensus 139 VdII~FG~e~~~n~~~L~~f~~~vn~~--d~Shlv~vp~g 176 (405)
|+-+.+|-.. +++++....+-.. -.||++.+-..
T Consensus 517 VYatALGV~d----kVvkam~~~~~~e~ikds~~~i~h~n 552 (595)
T COG4907 517 VYATALGVSD----KVVKAMRKALDMEIIKDSYSPIFHNN 552 (595)
T ss_pred hhhhhhccHH----HHHHHHHHhCcHhHhcccceeEEecc
Confidence 3445555444 4677765443321 25788877653
No 170
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=36.20 E-value=2e+02 Score=26.59 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=30.7
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHh--CCceEEEEEeCCCC
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKK--NSVAIDIVNFGEDD 148 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKk--nnI~VdII~FG~e~ 148 (405)
....+|+|+|..... ....+.++++.+++ .++.+.|+|-|...
T Consensus 186 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~ 231 (359)
T cd03808 186 EDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEE 231 (359)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcc
Confidence 346778888876543 56678888999886 45777777777655
No 171
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=35.36 E-value=84 Score=26.20 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCCchhhhhh
Q 015543 125 MEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVL 184 (405)
Q Consensus 125 l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~~lLsD~l 184 (405)
|......|++.||++-+|++|... -++.|++.+.- ... ++ +.|.. -|+..+
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~-----~~~~f~~~~~~-p~~-ly-~D~~~-~lY~~l 52 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPE-----GIEKFCELTGF-PFP-LY-VDPER-KLYKAL 52 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHH-----HHHHHHhccCC-CCc-EE-EeCcH-HHHHHh
Confidence 345567899999999999998765 48999976432 333 44 44443 477776
No 172
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=35.18 E-value=75 Score=29.72 Aligned_cols=66 Identities=20% Similarity=0.198 Sum_probs=41.6
Q ss_pred eEEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCCC-------CcHHHHHHHHHHHcCCCCcEEEEecC
Q 015543 108 QRIIVFAGSPVKY--DRKVMEMIGKKLKKNSVAIDIVNFGEDDD-------GKPEKLEALLAAVNNNDSSHLVHVPT 175 (405)
Q Consensus 108 ~RIVvFvgSpi~~--d~~~l~~~akkLKknnI~VdII~FG~e~~-------~n~~~L~~f~~~vn~~d~Shlv~vp~ 175 (405)
++|++|.|||... +..-+..+++.++..++.|.+|.+.+-.. ...+-++.+.+.+..-| .+|.+-|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD--~iIi~tP 75 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQAD--GLIVATP 75 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCC--EEEEECC
Confidence 3789999999753 34445566778888899999888764210 01235566667665434 4555544
No 173
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=35.02 E-value=2.1e+02 Score=26.55 Aligned_cols=13 Identities=46% Similarity=0.439 Sum_probs=8.7
Q ss_pred CCCHHHHHHHHhc
Q 015543 222 NIDPELALALRVS 234 (405)
Q Consensus 222 ~~DPELa~ALr~S 234 (405)
-.||+|+-.||--
T Consensus 128 ~~d~~l~~kl~~~ 140 (156)
T TIGR01162 128 IKDPELAEKLKEY 140 (156)
T ss_pred CCCHHHHHHHHHH
Confidence 3578888777544
No 174
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=34.59 E-value=1.9e+02 Score=30.03 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=37.7
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 015543 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAA 161 (405)
Q Consensus 107 ~~RIVvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~ 161 (405)
...+|+|+|..... ....+.+++++|++.++.+-|||-|... -.+.|+.++..
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~--~~~~l~~~~~~ 343 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPE--LEEALRELAER 343 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHH--HHHHHHHHHHH
Confidence 56788898887653 5667888899998888888888877421 23467777654
No 175
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=33.96 E-value=1.6e+02 Score=28.87 Aligned_cols=56 Identities=13% Similarity=-0.009 Sum_probs=35.4
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC-----CceEEEEEeCCCCC-C---cHHHHHHHHHH
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN-----SVAIDIVNFGEDDD-G---KPEKLEALLAA 161 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKkn-----nI~VdII~FG~e~~-~---n~~~L~~f~~~ 161 (405)
....+|+++|..... +...++++++++++. ++.+.+||=|.... . ..+.|+.+++.
T Consensus 209 ~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~ 274 (392)
T cd03805 209 SGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEE 274 (392)
T ss_pred CCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHH
Confidence 345667787776543 677889999999876 56666665443320 1 12567777765
No 176
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.92 E-value=4.7e+02 Score=26.45 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=45.5
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcE--EEEecCCCchhhhhh
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSH--LVHVPTGPNALSDVL 184 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Sh--lv~vp~g~~lLsD~l 184 (405)
++.++.-+....+..=.....|.+++-||.+..+-|.+.. ...+++ ..++++|.++.-| +|-.|--+++-...+
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~~l~-~~I~~lN~d~~V~GIivqlPlp~~i~~~~i 109 (284)
T PRK14179 34 GLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETI-SQEELL-DLIERYNQDPTWHGILVQLPLPKHINEEKI 109 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCEEEEcCCCCCCCCHHHH
Confidence 3433333332333333445688999999999999999877 454444 5678899876655 444454345433444
No 177
>PRK05569 flavodoxin; Provisional
Probab=33.75 E-value=74 Score=27.39 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=30.4
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
+|+|+.+|+...+..-...+++.+++.++.|+++.+...
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~ 41 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADA 41 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcC
Confidence 577777888655677777888889889999998887653
No 178
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=33.57 E-value=1.4e+02 Score=26.03 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=40.2
Q ss_pred EEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 111 IVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 111 VvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
|-|.++| +|+ ..-++-+.|+.+||...+|.|.... -..+.|..+++.+.
T Consensus 3 itiy~~p-~C~--t~rka~~~L~~~gi~~~~~~y~~~~-~s~~eL~~~l~~~g 51 (117)
T COG1393 3 ITIYGNP-NCS--TCRKALAWLEEHGIEYTFIDYLKTP-PSREELKKILSKLG 51 (117)
T ss_pred EEEEeCC-CCh--HHHHHHHHHHHcCCCcEEEEeecCC-CCHHHHHHHHHHcC
Confidence 4445777 443 5778888999999999999999988 78899999998876
No 179
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=33.42 E-value=1.6e+02 Score=28.87 Aligned_cols=79 Identities=19% Similarity=0.329 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCC
Q 015543 88 AAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS 167 (405)
Q Consensus 88 ~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~ 167 (405)
.+|.......|++.. ..+.| |.|+|+. ++.+.+++++|++.- .+.|+|+=..- -+.+-.+++++.+|. .+
T Consensus 88 v~G~dl~~~ll~~~~--~~~~~-v~llG~~----~~v~~~a~~~l~~~y-~l~i~g~~~Gy-f~~~e~~~i~~~I~~-s~ 157 (243)
T PRK03692 88 VAGADLWEALMARAG--KEGTP-VFLVGGK----PEVLAQTEAKLRTQW-NVNIVGSQDGY-FTPEQRQALFERIHA-SG 157 (243)
T ss_pred eChHHHHHHHHHHHH--hcCCe-EEEECCC----HHHHHHHHHHHHHHh-CCEEEEEeCCC-CCHHHHHHHHHHHHh-cC
Confidence 345555555555432 12344 4555765 888999999998875 77888764322 233334567777764 45
Q ss_pred cEEEEecCC
Q 015543 168 SHLVHVPTG 176 (405)
Q Consensus 168 Shlv~vp~g 176 (405)
.++|.|-=|
T Consensus 158 ~dil~VglG 166 (243)
T PRK03692 158 AKIVTVAMG 166 (243)
T ss_pred CCEEEEECC
Confidence 677777555
No 180
>PRK08105 flavodoxin; Provisional
Probab=33.38 E-value=49 Score=29.62 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=32.0
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
+|+||.||-....+.-...+++.|++.++.|.++.+..
T Consensus 3 ~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~ 40 (149)
T PRK08105 3 KVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPE 40 (149)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhh
Confidence 68888899877777778899999999999999987643
No 181
>PRK10307 putative glycosyl transferase; Provisional
Probab=32.88 E-value=1.4e+02 Score=30.02 Aligned_cols=53 Identities=13% Similarity=0.281 Sum_probs=34.4
Q ss_pred eEEEEEecCCCCC-ChhHHHHHHHHHHhC-CceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 015543 108 QRIIVFAGSPVKY-DRKVMEMIGKKLKKN-SVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (405)
Q Consensus 108 ~RIVvFvgSpi~~-d~~~l~~~akkLKkn-nI~VdII~FG~e~~~n~~~L~~f~~~vn~ 164 (405)
..+|+|+|..... +-..++++++++++. ++.+-|||=|... +.|+++++..+.
T Consensus 229 ~~~i~~~G~l~~~kg~~~li~a~~~l~~~~~~~l~ivG~g~~~----~~l~~~~~~~~l 283 (412)
T PRK10307 229 KKIVLYSGNIGEKQGLELVIDAARRLRDRPDLIFVICGQGGGK----ARLEKMAQCRGL 283 (412)
T ss_pred CEEEEEcCccccccCHHHHHHHHHHhccCCCeEEEEECCChhH----HHHHHHHHHcCC
Confidence 4578888876543 566788888887654 4666666655432 467777775543
No 182
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=32.30 E-value=5.1e+02 Score=25.70 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=34.6
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhCC----ceEEEEEeCCCCC-CcHHHHHHHHHHHcC
Q 015543 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKNS----VAIDIVNFGEDDD-GKPEKLEALLAAVNN 164 (405)
Q Consensus 107 ~~RIVvFvgSpi~~-d~~~l~~~akkLKknn----I~VdII~FG~e~~-~n~~~L~~f~~~vn~ 164 (405)
.+.+|+|+|..... ....+.+++++|++.+ +.+-|||-+.... ...+.++.+++..+-
T Consensus 218 ~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l 281 (405)
T TIGR03449 218 DTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGI 281 (405)
T ss_pred CCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCC
Confidence 45788888887643 5667888888886643 4455555211110 123567777776543
No 183
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.30 E-value=4.4e+02 Score=26.69 Aligned_cols=92 Identities=10% Similarity=0.081 Sum_probs=53.2
Q ss_pred HHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcE
Q 015543 90 GIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSH 169 (405)
Q Consensus 90 gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Sh 169 (405)
-|.--...|+.+.. ..+ +++++.-++...+..=.....|.+++-||.+.++-|.+.. ... -|...++.+|.++.-|
T Consensus 18 ~lk~~i~~l~~~~~-~~P-~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-s~~-el~~~I~~lN~D~~V~ 93 (284)
T PRK14177 18 EIRETIEERKTKNK-RIP-KLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQT-TTE-ELLGVIDKLNLDPNVD 93 (284)
T ss_pred HHHHHHHHHHhcCC-CCC-eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHH-HHHHHHHHHhCCCCCC
Confidence 33334445665422 223 3434433333334444556788999999999999998876 444 4455667898876555
Q ss_pred EEE--ecCCCchhhhhhh
Q 015543 170 LVH--VPTGPNALSDVLI 185 (405)
Q Consensus 170 lv~--vp~g~~lLsD~l~ 185 (405)
=+. .|--.++-...++
T Consensus 94 GIlvqlPLp~~i~~~~i~ 111 (284)
T PRK14177 94 GILLQHPVPSQIDERAAF 111 (284)
T ss_pred eEEEcCCCCCCCCHHHHH
Confidence 444 3433354444444
No 184
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=32.18 E-value=5.7e+02 Score=26.14 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=38.7
Q ss_pred ceEEEEEeCChh--hcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCC
Q 015543 4 EATMICIDNSEW--MRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG 58 (405)
Q Consensus 4 Ea~~IvIDnSes--MrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~ 58 (405)
.++++|+|.|+| ..-.|-..+||.-.+.....+|+.. -...+.|+.+.++.
T Consensus 209 ~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~----~~~~~piil~~NK~ 261 (342)
T smart00275 209 TAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR----WFANTSIILFLNKI 261 (342)
T ss_pred CEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc----cccCCcEEEEEecH
Confidence 589999999998 3455666799999888888888742 23457788888873
No 185
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=31.98 E-value=2.8e+02 Score=23.33 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=35.1
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
.--+|+|+.|. ...++.+.++.+|+.+++| |.+-... -|..+++.. +-+.+.+|.+
T Consensus 44 ~dl~I~iS~SG---~t~e~i~~~~~a~~~g~~i--I~IT~~~-----~l~~~~~~~----~~~~~~~p~~ 99 (119)
T cd05017 44 KTLVIAVSYSG---NTEETLSAVEQAKERGAKI--VAITSGG-----KLLEMAREH----GVPVIIIPKG 99 (119)
T ss_pred CCEEEEEECCC---CCHHHHHHHHHHHHCCCEE--EEEeCCc-----hHHHHHHHc----CCcEEECCCC
Confidence 34455555444 3567888999999999855 4544322 266666543 4577777775
No 186
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=31.71 E-value=1.3e+02 Score=23.52 Aligned_cols=36 Identities=6% Similarity=0.184 Sum_probs=29.1
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeC
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFG 145 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG 145 (405)
+|-++|.....+++-+.++...|.+.+|+|+.|+-+
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~s 38 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTS 38 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEcC
Confidence 355567777778888999999999999999998743
No 187
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=31.42 E-value=1.2e+02 Score=24.74 Aligned_cols=67 Identities=9% Similarity=0.091 Sum_probs=40.0
Q ss_pred ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCC----ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY----DRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~----d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
.+.|...+.++=.+-...+..... ...+.+| +=.+.+.. .-+.+..+.+++++.|+.+.++|+....
T Consensus 15 ~l~G~L~~~~a~~~~~~l~~~~~~-~~~~~vv-lDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v 85 (109)
T cd07041 15 PLIGDLDDERAEQLQERLLEAISR-RRARGVI-IDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEV 85 (109)
T ss_pred eeeeeECHHHHHHHHHHHHHHHHH-cCCCEEE-EECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 456777777775554332222111 1233333 33333331 3457788999999999999999986544
No 188
>PRK06703 flavodoxin; Provisional
Probab=31.39 E-value=70 Score=28.05 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=31.8
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
+++|+.+|....++.-...+++.|.+.++.|+++.+...
T Consensus 3 kv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 41 (151)
T PRK06703 3 KILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGM 41 (151)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhC
Confidence 677777887666777778889999999999999887653
No 189
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=31.32 E-value=82 Score=26.78 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=35.5
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 015543 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~v 162 (405)
...|+|+..+.. -....++++.|++++|.+.||.+-.-..-..+.+..++.+.
T Consensus 9 g~di~iia~G~~---~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~ 61 (124)
T PF02780_consen 9 GADITIIAYGSM---VEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKT 61 (124)
T ss_dssp SSSEEEEEETTH---HHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHH
T ss_pred CCCEEEEeehHH---HHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHh
Confidence 345566655553 46788999999999999999998764323344555544433
No 190
>PRK05568 flavodoxin; Provisional
Probab=31.29 E-value=91 Score=26.79 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=31.0
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
+++||.+|....+..-...+++.+++.++.|.++.+....
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~ 42 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEAS 42 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4666667776667777888889999999999999886533
No 191
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=31.13 E-value=2.2e+02 Score=28.77 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=29.1
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCC
Q 015543 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGED 147 (405)
Q Consensus 107 ~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e 147 (405)
...+|+|+|..... +-..+.++.++|++. ++.+-|||-|..
T Consensus 192 ~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~ 235 (380)
T PRK15484 192 DETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTA 235 (380)
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 45778888886543 555677888887654 678888887654
No 192
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=31.09 E-value=1.1e+02 Score=23.16 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=24.4
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~ 143 (405)
+||.+.+ ...++.|.++.+.|.+++|.|.-+.
T Consensus 2 ~ri~v~v----~d~pG~La~v~~~l~~~~inI~~i~ 33 (66)
T cd04908 2 KQLSVFL----ENKPGRLAAVTEILSEAGINIRALS 33 (66)
T ss_pred EEEEEEE----cCCCChHHHHHHHHHHCCCCEEEEE
Confidence 4666653 4458999999999999999885443
No 193
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=30.90 E-value=5.9e+02 Score=27.46 Aligned_cols=67 Identities=7% Similarity=0.109 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015543 89 AGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (405)
Q Consensus 89 ~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~ 160 (405)
.|+.+++.....-+++..++.||.+ .+.-+.+..-.+.|.++++.|.-|.|......+.+.++.+++
T Consensus 113 Es~Nlvl~~v~~~~~~~~~k~iitl-----~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~ 179 (428)
T KOG1549|consen 113 ESNNLVLKGVARFFGDKTKKHIITL-----QTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIR 179 (428)
T ss_pred HHHHHHHHHhhccccccccceEEEe-----cccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcC
Confidence 4666776666654444334455554 444566778888999999888888888655444445554443
No 194
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=30.80 E-value=1.4e+02 Score=32.14 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=35.7
Q ss_pred EEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 109 RIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 109 RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
..|+|+|..... ....++++..++++. ++.+.|+|-|.+. +.|+.+++..+
T Consensus 320 ~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~----~~l~~~i~~~~ 373 (500)
T TIGR02918 320 FSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGEK----QKLQKIINENQ 373 (500)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchhH----HHHHHHHHHcC
Confidence 467888876543 455677777777654 6888888887654 47888887654
No 195
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=30.57 E-value=2.2e+02 Score=27.03 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=49.1
Q ss_pred CHHHHHHhhcccccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 68 DLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 68 D~~kils~L~~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
|.-..+-.-..|-+.|.+.-..+-++....+.-. +.+..+.|+|++.||-.. -..-..+...|+..+..|.+++.|--
T Consensus 27 ~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~-~~~~~~~I~l~INSpGG~-v~~g~~I~d~i~~~~~~v~t~~~G~a 104 (207)
T PRK12553 27 DPYNKLFEERIIFLGGQVDDASANDVMAQLLVLE-SIDPDRDITLYINSPGGS-VTAGDAIYDTIQFIRPDVQTVCTGQA 104 (207)
T ss_pred cHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCCc-HHHHHHHHHHHHhcCCCcEEEEEeeh
Confidence 3333333344567788877776666555444432 345578999999999643 44445556666666677777777754
Q ss_pred C
Q 015543 148 D 148 (405)
Q Consensus 148 ~ 148 (405)
.
T Consensus 105 a 105 (207)
T PRK12553 105 A 105 (207)
T ss_pred h
Confidence 4
No 196
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=30.54 E-value=17 Score=35.24 Aligned_cols=72 Identities=15% Similarity=0.300 Sum_probs=39.3
Q ss_pred CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCc---HHHHHHHHHHHcCCCCcEEEEecCCCch
Q 015543 103 NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGK---PEKLEALLAAVNNNDSSHLVHVPTGPNA 179 (405)
Q Consensus 103 ~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n---~~~L~~f~~~vn~~d~Shlv~vp~g~~l 179 (405)
.+.|++|||+|. ..+-.-++.|++.|..|.-|-+.... +. .+.|..+++.. .-++++++-|+...
T Consensus 37 ~~~HkqKl~l~~--------saMRhfa~~L~~~G~~V~Y~~~~~~~-~~~s~~~~L~~~~~~~---~~~~~~~~~P~d~~ 104 (224)
T PF04244_consen 37 VPHHKQKLVLFF--------SAMRHFADELRAKGFRVHYIELDDPE-NTQSFEDALARALKQH---GIDRLHVMEPGDYR 104 (224)
T ss_dssp S---HHHHHHHH--------HHHHHHHHHHHHTT--EEEE-TT-TT---SSHHHHHHHHHHHH-------EEEE--S-HH
T ss_pred CcccHHHHHHHH--------HHHHHHHHHHHhCCCEEEEEeCCCcc-ccccHHHHHHHHHHHc---CCCEEEEECCCCHH
Confidence 456888888773 34667899999999999999999765 22 34454544433 45788889888765
Q ss_pred hhhhhhc
Q 015543 180 LSDVLIS 186 (405)
Q Consensus 180 LsD~l~s 186 (405)
|...|-+
T Consensus 105 l~~~l~~ 111 (224)
T PF04244_consen 105 LEQRLES 111 (224)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6555533
No 197
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=30.52 E-value=1.4e+02 Score=25.74 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=7.8
Q ss_pred CCceEEEEEeCCC
Q 015543 135 NSVAIDIVNFGED 147 (405)
Q Consensus 135 nnI~VdII~FG~e 147 (405)
.+.++.||.||..
T Consensus 33 ~~d~fnii~f~~~ 45 (155)
T PF13768_consen 33 PGDRFNIIAFGSS 45 (155)
T ss_pred CCCEEEEEEeCCE
Confidence 3446666666664
No 198
>PRK04155 chaperone protein HchA; Provisional
Probab=30.46 E-value=2.2e+02 Score=28.70 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=21.8
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 121 DRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 121 d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
.+.++..-...|++.++.|+|++...
T Consensus 75 ~~~E~~~P~~~L~~AG~eVdiAS~~G 100 (287)
T PRK04155 75 HPVETLLPMYHLHKAGFEFDVATLSG 100 (287)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 45577778899999999999999843
No 199
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=30.12 E-value=1.8e+02 Score=26.22 Aligned_cols=60 Identities=12% Similarity=0.208 Sum_probs=44.3
Q ss_pred cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCC--------CCh-hHHHHHHHHHHhCCceEEEEE
Q 015543 81 IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK--------YDR-KVMEMIGKKLKKNSVAIDIVN 143 (405)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~--------~d~-~~l~~~akkLKknnI~VdII~ 143 (405)
|.|.-+..+|++.|..+|+. .++--||-+|.++-.. .|+ ..+...-+.+.+.||.|.+-.
T Consensus 11 pYg~q~a~~A~~fA~all~~---gh~~v~iFly~DgV~~~~~~~~Pa~dEf~l~~~~~~l~~~~gv~v~~C~ 79 (126)
T COG1553 11 PYGTESAFSALRFAEALLEQ---GHELVRLFLYQDGVHNGNKGQKPASDEFNLIQAWLELLTEQGVPVKLCV 79 (126)
T ss_pred CCccHHHHHHHHHHHHHHHc---CCeEEEEEEeeccccccccCCCCcccccchHHHHHHHHHHcCCcEeeeH
Confidence 67888999999999999986 2567777777766543 122 245567788899999887644
No 200
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=29.80 E-value=1.7e+02 Score=27.76 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=47.2
Q ss_pred ccCCcccHHHHHHHHHH------HhcccCCCCCCe-EEEEEecCCCCCC--hhHHHHHHHHHHhCCceEEEEEeCCCCC
Q 015543 80 DIGGEMNIAAGIQVAQL------ALKHRQNKNQRQ-RIIVFAGSPVKYD--RKVMEMIGKKLKKNSVAIDIVNFGEDDD 149 (405)
Q Consensus 80 ~~~G~~sL~~gL~iA~l------ALKhr~~k~~~~-RIVvFvgSpi~~d--~~~l~~~akkLKknnI~VdII~FG~e~~ 149 (405)
...|..++-..|.-+.. .|++++.+..+. +||++++-..+.. ..-+..++..+.+..-+|.++.|++...
T Consensus 23 ~~~~~lD~rrTir~~~r~~g~~~~l~~r~~r~~~~~~lvvl~DvSGSM~~~s~~~l~~~~~l~~~~~~~~~f~F~~~l~ 101 (222)
T PF05762_consen 23 RRRGRLDLRRTIRASLRTGGEPLRLVRRRRRPRKPRRLVVLCDVSGSMAGYSEFMLAFLYALQRQFRRVRVFVFSTRLT 101 (222)
T ss_pred CCCCCCCHHHHHHHHHhcCCCcceeeccccccCCCccEEEEEeCCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeehh
Confidence 34667777777766642 355555333444 8998886665542 3456677777888777999999998773
No 201
>PF13362 Toprim_3: Toprim domain
Probab=29.53 E-value=1.5e+02 Score=24.03 Aligned_cols=42 Identities=24% Similarity=0.379 Sum_probs=31.7
Q ss_pred CCCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 105 NQRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 105 ~~~~RIVvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
...++|||+.+-.... ......+++++|++.++.+.++--+.
T Consensus 39 ~~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p~~ 81 (96)
T PF13362_consen 39 EPGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEPGP 81 (96)
T ss_pred CCCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 3677788887755431 46678889999999999999987743
No 202
>PF09875 DUF2102: Uncharacterized protein conserved in archaea (DUF2102); InterPro: IPR012025 The exact functionof this protein unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=29.43 E-value=1.3e+02 Score=26.24 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=52.7
Q ss_pred EEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 112 VFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 112 vFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
||++++....|.++..-+-.+ +..|.|.=-+||.-.+--.+....+++.+-.-|.+|+.+-.-|
T Consensus 2 ivl~~~~~v~Ps~l~~~~~~~-~~~v~iKETCFG~~i~Ge~e~V~~~i~~iR~ld~~~IF~KdRG 65 (104)
T PF09875_consen 2 IVLSSEANVSPSDLAMKLYEL-SLPVTIKETCFGAMIEGEEEEVDKVIEEIRKLDPNHIFVKDRG 65 (104)
T ss_pred EEeCCCCCcCHHHHHHHHHhc-CCCceeeecceeeEEECCHHHHHHHHHHHHhhCCCceEeecCC
Confidence 567888767899998888776 5569999999999776667899999999988788888887666
No 203
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=29.33 E-value=63 Score=30.70 Aligned_cols=38 Identities=8% Similarity=0.039 Sum_probs=28.7
Q ss_pred EEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 111 IVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 111 VvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
|||+|||... +......+++.+.+.+++|--|+||-..
T Consensus 50 liisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC~G~Ql 88 (214)
T PRK07765 50 VLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCLGHQA 88 (214)
T ss_pred EEECCCCCChhhcchHHHHHHHHHhCCCCEEEEccCHHH
Confidence 6777887643 2234457889999999999999999755
No 204
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=29.30 E-value=58 Score=29.46 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=37.5
Q ss_pred EEEEecCCCCCC-hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 015543 110 IIVFAGSPVKYD-RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAA 161 (405)
Q Consensus 110 IVvFvgSpi~~d-~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~ 161 (405)
-||++||+.... -.....+++.+.+.+++|=-|+||-.. ++.+|-..
T Consensus 45 ~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~Q~-----la~~~G~~ 92 (192)
T PF00117_consen 45 GIIISGGPGSPYDIEGLIELIREARERKIPILGICLGHQI-----LAHALGGK 92 (192)
T ss_dssp EEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHHHH-----HHHHTTHE
T ss_pred EEEECCcCCccccccccccccccccccceEEEEEeehhhh-----hHHhcCCc
Confidence 477789998764 688889999999999999999999755 55555443
No 205
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=29.06 E-value=1.1e+02 Score=24.04 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=32.2
Q ss_pred cccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015543 99 KHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (405)
Q Consensus 99 Khr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~ 143 (405)
..|+.+.....+++|+......+..++.++.+.|++.-..+.++|
T Consensus 33 ~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~~~~~lG 77 (80)
T cd04905 33 ESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTEFVKVLG 77 (80)
T ss_pred EEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCeEEEee
Confidence 355555556667878765544457788899999999877777776
No 206
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=28.78 E-value=1.2e+02 Score=24.62 Aligned_cols=67 Identities=13% Similarity=0.110 Sum_probs=41.0
Q ss_pred ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCC----ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY----DRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~----d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
++.|...|.++=.+-...+..... ...+.|++=.|.+.. .-+.|..+.+++++.|+.+.+++.....
T Consensus 13 ~~~G~l~f~~~~~~~~~l~~~~~~--~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v 83 (100)
T cd06844 13 RLEGELDHHSVEQFKEELLHNITN--VAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLTGISPAV 83 (100)
T ss_pred EEEEEecHhhHHHHHHHHHHHHHh--CCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEECCCHHH
Confidence 456666676665554433322111 223445554555542 4567889999999999999999876533
No 207
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=28.74 E-value=3.7e+02 Score=27.09 Aligned_cols=91 Identities=13% Similarity=0.097 Sum_probs=45.0
Q ss_pred ccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCC----CChhHHHHHHHHHHh-CCceEEEEEeCCCCCCcHHHHHHHH
Q 015543 85 MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK----YDRKVMEMIGKKLKK-NSVAIDIVNFGEDDDGKPEKLEALL 159 (405)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~----~d~~~l~~~akkLKk-nnI~VdII~FG~e~~~n~~~L~~f~ 159 (405)
.++..-+......|+. ..+++||+++=--. .+...++.+.+.+.. .+.+|.+|+.|...+ ....+-
T Consensus 120 ~~~~~~~~~~~~~l~~-----~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~----~~~~l~ 190 (394)
T PRK00411 120 LSFDELFDKIAEYLDE-----RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT----FLYILD 190 (394)
T ss_pred CCHHHHHHHHHHHHHh-----cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc----hhhhcC
Confidence 3445445554444443 34567777654322 123456666654433 244788999988662 223333
Q ss_pred HHHcCCCCcEEEEecCC-Cchhhhhh
Q 015543 160 AAVNNNDSSHLVHVPTG-PNALSDVL 184 (405)
Q Consensus 160 ~~vn~~d~Shlv~vp~g-~~lLsD~l 184 (405)
..+.+.=+.+.+.++|- ..-+.+.|
T Consensus 191 ~~~~s~~~~~~i~f~py~~~e~~~il 216 (394)
T PRK00411 191 PRVKSVFRPEEIYFPPYTADEIFDIL 216 (394)
T ss_pred HHHHhcCCcceeecCCCCHHHHHHHH
Confidence 33322222345666653 23344444
No 208
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=28.55 E-value=1.7e+02 Score=30.18 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 124 VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 124 ~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
...+.+++|++.+|.|.||.+-.-.--..+.|.+.++++ .++|+|-.+
T Consensus 242 ~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t-----~~vvtvEE~ 289 (356)
T PLN02683 242 YALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKT-----NRLVTVEEG 289 (356)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhc-----CeEEEEeCC
Confidence 456778888889999999988875433345555555544 267777654
No 209
>PRK09271 flavodoxin; Provisional
Probab=28.53 E-value=99 Score=27.72 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=30.1
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
++|+|+.+|-...+++-...+++.|+..++.|.+..+..
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~ 39 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDV 39 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEeccc
Confidence 367777788766677778888999999999887766543
No 210
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.31 E-value=5.3e+02 Score=26.09 Aligned_cols=90 Identities=12% Similarity=0.121 Sum_probs=52.8
Q ss_pred HHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEE
Q 015543 91 IQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHL 170 (405)
Q Consensus 91 L~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shl 170 (405)
|..-...|+++ . ..+ +++++.-+....+..=.....|.+++-||.+.++-|.+.. ...+++ ..++++|.+..-|-
T Consensus 17 l~~~v~~l~~~-g-~~P-~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~el~-~~I~~lN~D~~V~G 91 (282)
T PRK14169 17 LKQTVAKLAQQ-D-VTP-TLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEAT-TQADLL-AKVAELNHDPDVDA 91 (282)
T ss_pred HHHHHHHHHhC-C-CCC-eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCE
Confidence 33344456543 2 123 3444444443333444456788999999999999999887 454455 55678987665554
Q ss_pred EEe--cCCCchhhhhhh
Q 015543 171 VHV--PTGPNALSDVLI 185 (405)
Q Consensus 171 v~v--p~g~~lLsD~l~ 185 (405)
+.| |--.++-.+.++
T Consensus 92 IlvqlPLp~~i~~~~i~ 108 (282)
T PRK14169 92 ILVQLPLPAGLDEQAVI 108 (282)
T ss_pred EEEeCCCCCCCCHHHHH
Confidence 444 433454444444
No 211
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=28.30 E-value=5.2e+02 Score=27.36 Aligned_cols=138 Identities=17% Similarity=0.103 Sum_probs=76.7
Q ss_pred ceEEEE-EeCChhhcCCCCCCcHHHHHHHHHHHHH---HhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc
Q 015543 4 EATMIC-IDNSEWMRNGDYSPSRLRAQADAVSLIC---GAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL 79 (405)
Q Consensus 4 Ea~~Iv-IDnSesMrngD~~PtRl~Aq~dAv~~fv---~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l 79 (405)
.|+||| .|.|.||.. .+++.++.|+ -.|+..+.+ +|=||-++-.....-|+ . ...-..
T Consensus 202 ~AV~fc~MDvSGSM~~---------~~K~lak~ff~~ly~FL~~~Y~-~VeivFI~H~t~AkEVd------E--eeFF~~ 263 (371)
T TIGR02877 202 NAVVIAMMDTSGSMGQ---------FKKYIARSFFFWMVKFLRTKYE-NVEICFISHHTEAKEVT------E--EEFFHK 263 (371)
T ss_pred cEEEEEEEeCCCCCCH---------HHHHHHHHHHHHHHHHHHhccC-ceEEEEEeecCeeEEcC------H--HHhccc
Confidence 467776 599999953 3444444432 234455553 67777776543211111 1 112223
Q ss_pred ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCC---CChhHHHHHHHHHHhCCceEEEEEeCCCCC--CcHHH
Q 015543 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK---YDRKVMEMIGKKLKKNSVAIDIVNFGEDDD--GKPEK 154 (405)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~---~d~~~l~~~akkLKknnI~VdII~FG~e~~--~n~~~ 154 (405)
.-.|+|-+..|++.|+..++.|-+ ...=-|=+|=.|.-. .|.....++.++|-. .|..+++|+-.. ....+
T Consensus 264 ~EsGGT~vSSA~~l~~eII~~rYp-p~~wNIY~f~aSDGDNw~~D~~~c~~ll~~llp---~~~~f~Y~Ei~~~~~~~~l 339 (371)
T TIGR02877 264 GESGGTYCSSGYKKALEIIDERYN-PARYNIYAFHFSDGDNLTSDNERAVKLVRKLLE---VCNLFGYGEIMPYGYSNTL 339 (371)
T ss_pred CCCCCeEehHHHHHHHHHHHhhCC-hhhCeeEEEEcccCCCccCCcHHHHHHHHHHHH---hhheEEEEEecCCCCcchH
Confidence 447889999999999999998744 333445555555443 243334444333322 256677777442 12456
Q ss_pred HHHHHHHHc
Q 015543 155 LEALLAAVN 163 (405)
Q Consensus 155 L~~f~~~vn 163 (405)
+..|-..+.
T Consensus 340 ~~~y~~~i~ 348 (371)
T TIGR02877 340 KNKFKNEIK 348 (371)
T ss_pred HHHHHhhhc
Confidence 666644364
No 212
>PRK09004 FMN-binding protein MioC; Provisional
Probab=28.05 E-value=75 Score=28.36 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=30.0
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNF 144 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~F 144 (405)
+|+||.||-..+.+.-...+++.|+..++.|.++..
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~ 38 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHG 38 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEecc
Confidence 578888888777777778899999999999998754
No 213
>KOG3572 consensus Uncharacterized conserved protein, contains DEP domain [Signal transduction mechanisms]
Probab=28.04 E-value=1.1e+02 Score=37.13 Aligned_cols=64 Identities=22% Similarity=0.433 Sum_probs=47.9
Q ss_pred cccHHHHHHHHHHHhc----ccCCCCCCeEEEEEe-cCCC-CCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 84 EMNIAAGIQVAQLALK----HRQNKNQRQRIIVFA-GSPV-KYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 84 ~~sL~~gL~iA~lALK----hr~~k~~~~RIVvFv-gSpi-~~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
+-+|...|.+|.-.|. .|.=.+..+-|||+. |+-+ ..|..-+.-+.++|..++|.+|+|++|+.
T Consensus 428 ~gNfLEvVNms~n~F~~~yidrdf~rTgq~iiiVTPG~GvfeVDr~Ll~LTkqrlid~gigmDlVCLgeq 497 (1701)
T KOG3572|consen 428 DGNFLEVVNMSMNSFSMYYIDRDFERTGQQIIIVTPGNGVFEVDRDLLSLTKQRLIDMGIGMDLVCLGEQ 497 (1701)
T ss_pred ccchHHhhhhhhhhccchhhhccccccceEEEEEcCCCceeeecHHHHHHhhhHhhhcccceeEEEccCC
Confidence 4578888888887665 233345667777665 3333 34888888899999999999999999984
No 214
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=27.89 E-value=6.6e+02 Score=25.64 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=28.6
Q ss_pred EEEEEecCCCCC-ChhHHHHHHHHHHhCC--ceEEEEEeCCCCCCcHHHHHHHHH
Q 015543 109 RIIVFAGSPVKY-DRKVMEMIGKKLKKNS--VAIDIVNFGEDDDGKPEKLEALLA 160 (405)
Q Consensus 109 RIVvFvgSpi~~-d~~~l~~~akkLKknn--I~VdII~FG~e~~~n~~~L~~f~~ 160 (405)
..|+++|.-... .-..+.+++.++++.+ +.+..+.+|... ..+.++.+++
T Consensus 231 ~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~--~~~~l~~~~~ 283 (407)
T cd04946 231 LRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGP--LEDTLKELAE 283 (407)
T ss_pred EEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCch--HHHHHHHHHH
Confidence 345555554433 4556778888887764 455555555433 2246777765
No 215
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=27.78 E-value=3.1e+02 Score=28.20 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=37.4
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAA 161 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~ 161 (405)
....+|+|+|..... ....+.++++++++.++.+-+||-|... -.+.++.+++.
T Consensus 294 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~--~~~~~~~~~~~ 348 (476)
T cd03791 294 PDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPE--YEEALRELAAR 348 (476)
T ss_pred CCCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHH--HHHHHHHHHHh
Confidence 456788898877643 5667888899998888888888777422 23455666554
No 216
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=27.71 E-value=24 Score=37.46 Aligned_cols=19 Identities=26% Similarity=0.651 Sum_probs=14.0
Q ss_pred ChHHHHHHHHHccccCCCC
Q 015543 324 DEDKELALALQMSMQDDTK 342 (405)
Q Consensus 324 ~ee~~ia~A~~ms~~~~~~ 342 (405)
.|||+|++||+||+.+.+.
T Consensus 164 ~EeEdiaKAi~lSL~E~~~ 182 (462)
T KOG2199|consen 164 QEEEDIAKAIELSLKEQEK 182 (462)
T ss_pred ccHHHHHHHHHhhHHHHhh
Confidence 5678888888888876543
No 217
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=27.69 E-value=1.8e+02 Score=23.57 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=38.1
Q ss_pred ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCC----ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY----DRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~----d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
.+.|...+.++=.+-......... ... +.|++=.+.++. .-..|..+.+++++.|+.+.+++.-...
T Consensus 13 ~l~G~L~f~~~~~~~~~l~~~~~~-~~~-~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~~~~v 83 (106)
T TIGR02886 13 RLSGELDHHTAERVRRKIDDAIER-RPI-KHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNVSPAV 83 (106)
T ss_pred EEecccchhhHHHHHHHHHHHHHh-CCC-CEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 455666666554444332221111 122 334443444432 3456778999999999999999875433
No 218
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=27.49 E-value=5.7e+02 Score=27.49 Aligned_cols=158 Identities=12% Similarity=0.167 Sum_probs=75.7
Q ss_pred EEEEeCChhhcC---CCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHh---hccc-
Q 015543 7 MICIDNSEWMRN---GDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILAC---MHEL- 79 (405)
Q Consensus 7 ~IvIDnSesMrn---gD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~---L~~l- 79 (405)
||.+|.|....- |-+...-+.+.+.-+..+.....+......+|.+.+-.. .. -.+..++... ++.+
T Consensus 2 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lg~~~lp~~----~~--~~~~~~~~~~~~~~~~vV 75 (446)
T PRK00973 2 MLKFDFSNVFEPNIGGGISIEDIESVKEKITSAVENLMEKEPNGELGFLELPYD----RS--LDSYEELKEWSKNFDNVV 75 (446)
T ss_pred eeEEehhhccccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCcCCcccCccc----cC--HHHHHHHHHHhhcCCEEE
Confidence 788887754433 334444354423222333333333333333554333211 00 0122333322 2333
Q ss_pred ccC-CcccHHHHHHHHHHHhcccCC-CC----CCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHH
Q 015543 80 DIG-GEMNIAAGIQVAQLALKHRQN-KN----QRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPE 153 (405)
Q Consensus 80 ~~~-G~~sL~~gL~iA~lALKhr~~-k~----~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~ 153 (405)
-++ |+.+| |-++...+|++... .. .....|.| .. +.|+..+..+.++++-.+..|-||+-.-...+...
T Consensus 76 viGIGGS~L--G~~al~~al~~~~~~~~~~~~~~~~~l~~-~~--n~dp~~~~~~l~~l~~~~Tl~iviSKSGtT~ET~~ 150 (446)
T PRK00973 76 VLGIGGSAL--GNLALHYALNPLNWNELSKEERNGPRVFV-LD--NVDPEKTASILDVIDLEKTLFNVISKSGNTAETLA 150 (446)
T ss_pred EEcCCchhH--HHHHHHHHHhhhccccccccccCCceEEE-eC--CCCHHHHHHHHHhCCcccEEEEEEeCCCCCHHHHH
Confidence 334 55554 55666777775310 00 01122334 32 34788999999888878888999988765433322
Q ss_pred HHHHH---HHHHcCCCCcEEEEecC
Q 015543 154 KLEAL---LAAVNNNDSSHLVHVPT 175 (405)
Q Consensus 154 ~L~~f---~~~vn~~d~Shlv~vp~ 175 (405)
-.+.| ++........|+|+|-.
T Consensus 151 ~f~~~~~~l~~~g~~~~~~~vaiTd 175 (446)
T PRK00973 151 NYLIIRGILEKLGLDPKKHLVFTTD 175 (446)
T ss_pred HHHHHHHHHHhcCccccceEEEEcC
Confidence 22222 22221123558777754
No 219
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=27.45 E-value=1.2e+02 Score=27.60 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=43.2
Q ss_pred HHHhhcc-cccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 72 ILACMHE-LDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 72 ils~L~~-l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
++..+-+ ..|.|---..-.++-|...|+. .....+|+++++.+| ..+.+|.+.++.+.-|++|.-
T Consensus 40 ~~k~~l~ma~P~gvk~~i~sve~a~~~l~~--~~~~~~~v~il~k~~---------~~~~~l~~~g~~i~~vnvG~~ 105 (151)
T cd00001 40 LRKTLLKLAAPPGVKLRIFTVEKAIEAINS--PKYDKQRVFLLFKNP---------QDVLRLVEGGVPIKTINVGNM 105 (151)
T ss_pred HHHHHHHhhCCCCCeEEEEEHHHHHHHHhC--cCCCCceEEEEECCH---------HHHHHHHHcCCCCCEEEECCC
Confidence 4443333 3555543333456677777776 456777888887877 556677788999999999964
No 220
>PRK13981 NAD synthetase; Provisional
Probab=27.39 E-value=8.1e+02 Score=26.42 Aligned_cols=92 Identities=21% Similarity=0.182 Sum_probs=51.9
Q ss_pred CCCCC--cHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCcccHHHHHHHHHH
Q 015543 19 GDYSP--SRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQL 96 (405)
Q Consensus 19 gD~~P--tRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~~G~~sL~~gL~iA~l 96 (405)
..+.| ++.....+++..++..|++..-...| ||.+.|+. ..++.. .+|..
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-vvglSGGi-------------------------DSa~~a--~la~~ 302 (540)
T PRK13981 251 GPIAPPPEGEAEDYRALVLGLRDYVRKNGFPGV-VLGLSGGI-------------------------DSALVA--AIAVD 302 (540)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCeE-EEECCCCH-------------------------HHHHHH--HHHHH
Confidence 35555 56777788888888888877655555 45555542 111111 22333
Q ss_pred HhcccCCCCCCeEEE-EEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 97 ALKHRQNKNQRQRII-VFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 97 ALKhr~~k~~~~RIV-vFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
+|.+ .+++ +++.+.. ..+.++...-+.+++-+|...+|.+..
T Consensus 303 a~g~-------~~v~~~~~p~~~-~~~~~~~~a~~~a~~lgi~~~~i~i~~ 345 (540)
T PRK13981 303 ALGA-------ERVRAVMMPSRY-TSEESLDDAAALAKNLGVRYDIIPIEP 345 (540)
T ss_pred HhCc-------CcEEEEECCCCC-CCHHHHHHHHHHHHHcCCeEEEEECHH
Confidence 3321 2333 3334332 334556556666778899999988764
No 221
>PRK05325 hypothetical protein; Provisional
Probab=27.29 E-value=4.8e+02 Score=27.84 Aligned_cols=138 Identities=13% Similarity=0.086 Sum_probs=77.4
Q ss_pred ceEEEEE-eCChhhcCCCCCCcHHHHHHHHHHHHH---HhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc
Q 015543 4 EATMICI-DNSEWMRNGDYSPSRLRAQADAVSLIC---GAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL 79 (405)
Q Consensus 4 Ea~~IvI-DnSesMrngD~~PtRl~Aq~dAv~~fv---~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l 79 (405)
.|+|||| |.|.||.. ..++.|+.|+ -.|+.-+. .+|=||-++...-..-|+ . ...-..
T Consensus 222 ~AVmfclMDvSGSM~~---------~~K~lakrff~lly~fL~r~Y-~~vEvvFI~H~t~AkEVd------E--eeFF~~ 283 (401)
T PRK05325 222 QAVMFCLMDVSGSMDE---------AEKDLAKRFFFLLYLFLRRKY-ENVEVVFIRHHTEAKEVD------E--EEFFYS 283 (401)
T ss_pred cEEEEEEEeCCCCCch---------HHHHHHHHHHHHHHHHHHhcc-CceEEEEEeecCceeEcC------H--HHcccc
Confidence 4777775 99999974 2344443332 33444555 577777776543111111 1 122233
Q ss_pred ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCC---CChhHHHHHHH-HHHhCCceEEEEEeCCCCCC---cH
Q 015543 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK---YDRKVMEMIGK-KLKKNSVAIDIVNFGEDDDG---KP 152 (405)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~---~d~~~l~~~ak-kLKknnI~VdII~FG~e~~~---n~ 152 (405)
.-.|+|-+..|++.|...+..|-+ ...=-|=+|=+|.-. .|.....++.+ +|-. .|...++++-... +.
T Consensus 284 ~esGGT~vSSA~~l~~eIi~~rYp-p~~wNIY~f~aSDGDNw~~D~~~~~~ll~~~llp---~~~~f~Y~Ev~~~~~~~~ 359 (401)
T PRK05325 284 RESGGTIVSSAYKLALEIIEERYP-PAEWNIYAFQASDGDNWSSDNPRCVELLREELLP---VCNYFAYIEVTPRAYRHQ 359 (401)
T ss_pred CCCCCeEehHHHHHHHHHHHhhCC-HhHCeeEEEEcccCCCcCCCCHHHHHHHHHHHHH---HhhheEEEEecCCCCCch
Confidence 457899999999999999998744 333345555555543 34444444432 2211 3566677764421 35
Q ss_pred HHHHHHHHHHcC
Q 015543 153 EKLEALLAAVNN 164 (405)
Q Consensus 153 ~~L~~f~~~vn~ 164 (405)
..+..+- .+..
T Consensus 360 ~l~~~y~-~i~~ 370 (401)
T PRK05325 360 TLWREYE-RLQD 370 (401)
T ss_pred HHHHHHH-Hhhc
Confidence 5666664 6654
No 222
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=27.11 E-value=2.9e+02 Score=26.12 Aligned_cols=68 Identities=16% Similarity=0.102 Sum_probs=42.7
Q ss_pred cccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 79 LDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 79 l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
|-+.|.+.-..+-.+....+.- ......+.|+|++-||-. +-..-..+...|+....+|.+|++|-..
T Consensus 26 I~i~g~I~~~~~~~i~~~L~~l-~~~~~~~~I~l~INSpGG-~v~ag~aI~d~i~~~~~~V~t~v~G~Aa 93 (197)
T PRK14512 26 IVIAGEINKDLSELFQEKILLL-EALDSKKPIFVYIDSEGG-DIDAGFAIFNMIRFVKPKVFTIGVGLVA 93 (197)
T ss_pred EEECCEEcHHHHHHHHHHHHHH-HhcCCCCCEEEEEECCCC-CHHHHHHHHHHHHhCCCCEEEEEEeeeH
Confidence 4667776555554444333321 123456889999999954 3444456666777777888888877654
No 223
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=26.92 E-value=3.3e+02 Score=25.53 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=39.7
Q ss_pred ccccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 78 ELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 78 ~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
-+-++|...-..+-++....+.-. .....+.|++++.||-.. -..-..+...|+..+..|.+|++|--.
T Consensus 28 iI~l~g~I~~~~~~~ii~~L~~l~-~~~~~~~i~l~InSpGG~-v~~g~~I~d~l~~~~~~v~t~~~G~Aa 96 (191)
T TIGR00493 28 IIFLSGEVNDSVANLIVAQLLFLE-AEDPEKDIYLYINSPGGS-ITAGLAIYDTMQFIKPDVSTICIGQAA 96 (191)
T ss_pred EEEEccEEChHHHHHHHHHHHHhh-ccCCCCCEEEEEECCCCC-HHHHHHHHHHHHhcCCCEEEEEEEeec
Confidence 356677765555444444333322 334556799999888643 333444555556555667777776644
No 224
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=26.90 E-value=1.6e+02 Score=22.14 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=29.0
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~ 143 (405)
+|-++|..+...++-+.++-+.|.+++|+|.-++
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~ 36 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTA 36 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEE
Confidence 5777899888889999999999999999996554
No 225
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.88 E-value=1.7e+02 Score=22.17 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=19.5
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEeC
Q 015543 121 DRKVMEMIGKKLKKNSVAIDIVNFG 145 (405)
Q Consensus 121 d~~~l~~~akkLKknnI~VdII~FG 145 (405)
.....++++++|++.|++|.+.-.+
T Consensus 13 ~~~~a~~i~~~Lr~~g~~v~~~~~~ 37 (91)
T cd00859 13 ALSEALELAEQLRDAGIKAEIDYGG 37 (91)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecCC
Confidence 4456888999999999999875543
No 226
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.76 E-value=6.1e+02 Score=25.74 Aligned_cols=91 Identities=22% Similarity=0.229 Sum_probs=52.8
Q ss_pred HHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEE
Q 015543 91 IQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHL 170 (405)
Q Consensus 91 L~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shl 170 (405)
|.-....|+.+.. ..++-.||.+| ....+..=.....|.+++-||.+.++-|.+.. ...+++ ..++++|.++.-|=
T Consensus 18 i~~~v~~l~~~~g-~~p~La~i~vg-~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~el~-~~i~~lN~d~~V~G 93 (296)
T PRK14188 18 VAAEVARLKAAHG-VTPGLAVVLVG-EDPASQVYVRSKGKQTKEAGMASFEHKLPADT-SQAELL-ALIARLNADPAIHG 93 (296)
T ss_pred HHHHHHHHHHccC-CCCeEEEEEeC-CChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCcE
Confidence 3333444554311 23333344444 33333444456788999999999999999887 555555 56688988776554
Q ss_pred EEe--cCCCchhhhhhh
Q 015543 171 VHV--PTGPNALSDVLI 185 (405)
Q Consensus 171 v~v--p~g~~lLsD~l~ 185 (405)
+.| |--.|+-.+.++
T Consensus 94 Ilvq~Plp~~~~~~~i~ 110 (296)
T PRK14188 94 ILVQLPLPKHLDSEAVI 110 (296)
T ss_pred EEEeCCCCCCCCHHHHH
Confidence 444 433354333443
No 227
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=26.75 E-value=45 Score=27.76 Aligned_cols=17 Identities=41% Similarity=0.817 Sum_probs=11.9
Q ss_pred CCCCCCHHHHHHHHHhh
Q 015543 369 GVDPNDPSVKDLIASLQ 385 (405)
Q Consensus 369 gvdpn~~~i~~~~~~~~ 385 (405)
||||+|+.||.++..+.
T Consensus 51 g~~p~s~evq~l~~~~~ 67 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWM 67 (118)
T ss_dssp T--TT-HHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHH
Confidence 89999999999987653
No 228
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.68 E-value=5.2e+02 Score=26.16 Aligned_cols=92 Identities=22% Similarity=0.257 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCc
Q 015543 89 AGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSS 168 (405)
Q Consensus 89 ~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~S 168 (405)
.-|......|+++ . ..++-.||.+|.. ..+..=.....|.+++-||.+.++-|.+.. ...+++ ..++++|.++.-
T Consensus 17 ~~~~~~v~~l~~~-g-~~p~Laii~vg~~-~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~~l~-~~I~~lN~d~~V 91 (286)
T PRK14175 17 QGLQDQVEALKEK-G-FTPKLSVILVGND-GASQSYVRSKKKAAEKIGMISEIVHLEETA-TEEEVL-NELNRLNNDDSV 91 (286)
T ss_pred HHHHHHHHHHHhc-C-CCCeEEEEEeCCC-HHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCC
Confidence 3344444456543 1 2233334444433 333334456688999999999999999887 455555 556889887665
Q ss_pred EEEEe--cCCCchhhhhhh
Q 015543 169 HLVHV--PTGPNALSDVLI 185 (405)
Q Consensus 169 hlv~v--p~g~~lLsD~l~ 185 (405)
|-+.| |--+++-...++
T Consensus 92 ~GIivq~Plp~~i~~~~i~ 110 (286)
T PRK14175 92 SGILVQVPLPKQVSEQKIL 110 (286)
T ss_pred CEEEEeCCCCCCCCHHHHH
Confidence 55444 433344444443
No 229
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=26.50 E-value=6.2e+02 Score=25.69 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=27.7
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~v 162 (405)
..+|+|++.. ..+...+.++.+++++..-.+.+|-.|... ...+.++++++..
T Consensus 233 ~~vil~~~~~-~~~~~~ll~A~~~l~~~~~~~~liivG~g~-~r~~~l~~~~~~~ 285 (425)
T PRK05749 233 RPVWIAASTH-EGEEELVLDAHRALLKQFPNLLLILVPRHP-ERFKEVEELLKKA 285 (425)
T ss_pred CcEEEEeCCC-chHHHHHHHHHHHHHHhCCCcEEEEcCCCh-hhHHHHHHHHHhC
Confidence 3456665543 334556677777776643334444445433 2224566666543
No 230
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.49 E-value=2e+02 Score=30.57 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=67.6
Q ss_pred EEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCC--HHHHHHhhcccccCC
Q 015543 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTD--LGKILACMHELDIGG 83 (405)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D--~~kils~L~~l~~~G 83 (405)
..+++|.|.||... +.-+-|.|-. ++...| ....+-+--+-+|.|+++- +-+|.|.| .+.++.++.++..+|
T Consensus 430 ~~laldvs~sm~~r-v~~s~ln~re-aaa~m~--linlhnead~~~vaf~d~l--te~pftkd~kigqv~~~~nni~~g~ 503 (598)
T KOG4465|consen 430 FCLALDVSASMNQR-VLGSILNARE-AAAAMC--LINLHNEADSRCVAFCDEL--TECPFTKDMKIGQVLDAMNNIDAGG 503 (598)
T ss_pred EEEEEecchhhhhh-hhccccchHH-HHhhhh--eeeeccccceeEEEecccc--ccCCCcccccHHHHHHHHhcCCCCC
Confidence 47899999999643 2222232222 222222 2335667778889999873 34567765 678999999998776
Q ss_pred c-ccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHh
Q 015543 84 E-MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKK 134 (405)
Q Consensus 84 ~-~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKk 134 (405)
. |.|..- -| ..+....-..|||.+-..-..+-++...+|+.++
T Consensus 504 tdcglpm~--wa------~ennlk~dvfii~tdndt~ageihp~~aik~yre 547 (598)
T KOG4465|consen 504 TDCGLPMI--WA------QENNLKADVFIIFTDNDTFAGEIHPAEAIKEYRE 547 (598)
T ss_pred CccCCcee--eh------hhcCCCccEEEEEecCcccccccCHHHHHHHHHH
Confidence 4 544311 11 1122334566777665544456667777766654
No 231
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=26.42 E-value=2.4e+02 Score=27.97 Aligned_cols=52 Identities=12% Similarity=0.302 Sum_probs=35.4
Q ss_pred HHHhcccCCCCCCeEEEEEecCCCCCChhH-HHHHHHHHHhCCceEEEEEeCCC
Q 015543 95 QLALKHRQNKNQRQRIIVFAGSPVKYDRKV-MEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 95 ~lALKhr~~k~~~~RIVvFvgSpi~~d~~~-l~~~akkLKknnI~VdII~FG~e 147 (405)
...|+.......+.++|.|+|.+-. ..-. +..++..+++.+.+|-+|++-..
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~-GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGA-GKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCC-CHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3345544344566788888877643 3444 56778889999999999987643
No 232
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=26.39 E-value=3.6e+02 Score=29.62 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=33.1
Q ss_pred HHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCCchhh
Q 015543 127 MIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALS 181 (405)
Q Consensus 127 ~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~~lLs 181 (405)
.+++.++..++ ++|--|... -|. --+.|+++++..+-.+++++|++.+++.
T Consensus 325 g~~~~f~~~Ga--~~vi~ggqt-~nP-S~~dll~ai~~~~a~~V~iLPNn~nii~ 375 (530)
T TIGR03599 325 GIAELFKSLGA--DVVIEGGQT-MNP-STEDILKAIEKVNAKNVFVLPNNKNIIL 375 (530)
T ss_pred hHHHHHHHCCC--CEEEeCCCC-CCC-CHHHHHHHHHhCCCCeEEEecCCccHHH
Confidence 56777888887 434344433 232 3456666666667789999999976543
No 233
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=26.35 E-value=3.2e+02 Score=23.58 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=31.6
Q ss_pred EEEecCCCCCC------hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 015543 111 IVFAGSPVKYD------RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (405)
Q Consensus 111 VvFvgSpi~~d------~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~v 162 (405)
|+|+|..++.. ..-...++++|++..-.+.++++|-....-...+..|-+.+
T Consensus 3 i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~ 60 (177)
T cd01822 3 ILALGDSLTAGYGLPPEEGWPALLQKRLDARGIDVTVINAGVSGDTTAGGLARLPALL 60 (177)
T ss_pred EEEEccccccCcCCCCCCchHHHHHHHHHHhCCCeEEEecCcCCcccHHHHHHHHHHH
Confidence 55557777532 22355678888887778888888876632233444444333
No 234
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=26.24 E-value=1.1e+02 Score=28.54 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=32.0
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHh-CCceEEEEEeCCCC
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKK-NSVAIDIVNFGEDD 148 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKk-nnI~VdII~FG~e~ 148 (405)
+|+|+.+|+...+..-...+++.+++ .++.|.++.+.+..
T Consensus 3 kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~ 43 (200)
T PRK03767 3 KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETV 43 (200)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccC
Confidence 68888899966566677778888887 99999999997543
No 235
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=26.21 E-value=2.5e+02 Score=26.82 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=26.5
Q ss_pred eEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 108 QRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 108 ~RIVvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
...|+|+|..... +-..+.++.+++++ ++++.+||-|...
T Consensus 193 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~-~~~l~ivG~~~~~ 233 (363)
T cd04955 193 GRYYLLVGRIVPENNIDDLIEAFSKSNS-GKKLVIVGNADHN 233 (363)
T ss_pred CcEEEEEecccccCCHHHHHHHHHhhcc-CceEEEEcCCCCc
Confidence 3457788876543 44556666666654 6899999988544
No 236
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=25.90 E-value=3.2e+02 Score=24.83 Aligned_cols=68 Identities=12% Similarity=0.164 Sum_probs=38.1
Q ss_pred cccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 79 LDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 79 l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
+-+.|...-..+-++....+.-+ .....+.|++++.||-. +...-..+...|+..+..|.++..|--.
T Consensus 12 i~i~g~I~~~~~~~i~~~l~~~~-~~~~~~~i~l~inSpGG-~v~~~~~i~~~l~~~~~~v~t~~~g~aa 79 (171)
T cd07017 12 IFLGGPIDDEVANLIIAQLLYLE-SEDPKKPIYLYINSPGG-SVTAGLAIYDTMQYIKPPVSTICLGLAA 79 (171)
T ss_pred EEEcCEEcHHHHHHHHHHHHHHH-ccCCCCceEEEEECCCC-CHHHHHHHHHHHHhcCCCEEEEEEeEeh
Confidence 44566654444433222222221 23456899999999965 3344445555666666777777776544
No 237
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.50 E-value=6.8e+02 Score=25.58 Aligned_cols=94 Identities=13% Similarity=0.124 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCC
Q 015543 88 AAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS 167 (405)
Q Consensus 88 ~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~ 167 (405)
..-|.-....||++ + ..++-.||.+|.. ..+..=.....|.+++-||.+.++-|.+.. ...+++ +.++.+|.++.
T Consensus 17 ~~~lk~~i~~l~~~-g-~~P~LaiI~vg~d-~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-t~~~l~-~~I~~lN~D~~ 91 (301)
T PRK14194 17 LAQVREDVRTLKAA-G-IEPALAVILVGND-PASQVYVRNKILRAEEAGIRSLEHRLPADT-SQARLL-ALIAELNADPS 91 (301)
T ss_pred HHHHHHHHHHHHhC-C-CCCeEEEEEeCCC-hhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHcCCCC
Confidence 33444445556654 1 2333344444433 333334456688899999999999999877 454444 55678988765
Q ss_pred cEE--EEecCCCchhhhhhhc
Q 015543 168 SHL--VHVPTGPNALSDVLIS 186 (405)
Q Consensus 168 Shl--v~vp~g~~lLsD~l~s 186 (405)
-|= |-.|--+++-...++.
T Consensus 92 V~GIlvqlPLP~~i~~~~i~~ 112 (301)
T PRK14194 92 VNGILLQLPLPAHIDEARVLQ 112 (301)
T ss_pred CCeEEEeCCCCCCCCHHHHHh
Confidence 443 3334333444444433
No 238
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=25.38 E-value=2.2e+02 Score=28.66 Aligned_cols=91 Identities=21% Similarity=0.195 Sum_probs=44.9
Q ss_pred EEEEecCCCceEEECCCCCHHHHHHhhccc-----------ccCCcc-cHH---HHHHHHHHHhcccCCCCCCeEEEEEe
Q 015543 50 GILTMGGKGVRVLTTPTTDLGKILACMHEL-----------DIGGEM-NIA---AGIQVAQLALKHRQNKNQRQRIIVFA 114 (405)
Q Consensus 50 Glvtmag~~~~vLvtlT~D~~kils~L~~l-----------~~~G~~-sL~---~gL~iA~lALKhr~~k~~~~RIVvFv 114 (405)
-+|+++|-....+..-..++.++..++..+ .+.+.. .=. .-+-.|...|++ .....+|.+-+
T Consensus 70 ViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~---~~p~l~vs~Tl 146 (294)
T cd06543 70 VIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQK---EYPDLKISFTL 146 (294)
T ss_pred EEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHH---HCCCcEEEEec
Confidence 466888765444554456677666655432 222321 111 112233333332 22333333333
Q ss_pred cC-CCCCChhHHHHHHHHHHhCCceEEEEEe
Q 015543 115 GS-PVKYDRKVMEMIGKKLKKNSVAIDIVNF 144 (405)
Q Consensus 115 gS-pi~~d~~~l~~~akkLKknnI~VdII~F 144 (405)
.. |.-.++ +=+.+.+.++.++|.|+.|++
T Consensus 147 p~~p~gl~~-~g~~~l~~a~~~Gv~~d~VNi 176 (294)
T cd06543 147 PVLPTGLTP-DGLNVLEAAAANGVDLDTVNI 176 (294)
T ss_pred CCCCCCCCh-hHHHHHHHHHHcCCCcceeee
Confidence 22 221222 224677778999999999875
No 239
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.29 E-value=6.9e+02 Score=25.48 Aligned_cols=77 Identities=19% Similarity=0.153 Sum_probs=47.4
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcE--EEEecCCCchhhhhhhc
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSH--LVHVPTGPNALSDVLIS 186 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Sh--lv~vp~g~~lLsD~l~s 186 (405)
+++++.-+....+..=.....|.+++-||.+.++-|.+.. ...+++ ..++++|.+..-| +|-.|--.++-.+.++.
T Consensus 35 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-t~~el~-~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~ 112 (297)
T PRK14168 35 GLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDI-TEEELL-ALIDKYNNDDSIHGILVQLPLPKHINEKKVLN 112 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 3333333332333334446688999999999999999887 555555 5668898866544 44445434554555543
Q ss_pred C
Q 015543 187 S 187 (405)
Q Consensus 187 S 187 (405)
.
T Consensus 113 ~ 113 (297)
T PRK14168 113 A 113 (297)
T ss_pred c
Confidence 3
No 240
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=25.29 E-value=97 Score=26.13 Aligned_cols=37 Identities=16% Similarity=0.373 Sum_probs=28.8
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
|+|+.+|....+..-...+++.++..++.|+++.+..
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~ 37 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVAD 37 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 3566688766667777788889999999999988765
No 241
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=25.14 E-value=2e+02 Score=30.93 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 124 VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 124 ~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
...+.++.|++++|.+.||.+-.-..-..+.+...+.++ .++|++-.+
T Consensus 354 ~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt-----~~vvtvEE~ 401 (464)
T PRK11892 354 YALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKT-----NRLVTVEEG 401 (464)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhc-----CeEEEEeCC
Confidence 567888999999999999999875433334444444444 267777765
No 242
>PRK00170 azoreductase; Reviewed
Probab=25.02 E-value=1.4e+02 Score=27.10 Aligned_cols=40 Identities=8% Similarity=0.184 Sum_probs=28.8
Q ss_pred eEEEEEecCCCCC-C--hhHHHHHHHHHHhC--CceEEEEEeCCC
Q 015543 108 QRIIVFAGSPVKY-D--RKVMEMIGKKLKKN--SVAIDIVNFGED 147 (405)
Q Consensus 108 ~RIVvFvgSpi~~-d--~~~l~~~akkLKkn--nI~VdII~FG~e 147 (405)
++|+++.|||... . ..-+...++.|++. +..|.+|.+...
T Consensus 2 mkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~ 46 (201)
T PRK00170 2 SKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAE 46 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 4789999999753 1 22333557778887 899999988754
No 243
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=24.89 E-value=55 Score=33.54 Aligned_cols=106 Identities=17% Similarity=0.276 Sum_probs=63.9
Q ss_pred EEEEecCCCceEEECCCCCHHHHHHhhccc------ccCCcccHHHHHHHHHHHhcccCC--CCCCeEEEEEecCCCCCC
Q 015543 50 GILTMGGKGVRVLTTPTTDLGKILACMHEL------DIGGEMNIAAGIQVAQLALKHRQN--KNQRQRIIVFAGSPVKYD 121 (405)
Q Consensus 50 Glvtmag~~~~vLvtlT~D~~kils~L~~l------~~~G~~sL~~gL~iA~lALKhr~~--k~~~~RIVvFvgSpi~~d 121 (405)
-+|+++|+-|.-+ +-....+++..+++. ...|. +|. .+|+..|. |..+..+-..+|.++..
T Consensus 131 d~VvlsGSlP~g~--~~d~y~~li~~~~~~g~~vilD~Sg~-----~L~---~~L~~~P~lIKPN~~EL~~~~g~~~~~- 199 (310)
T COG1105 131 DIVVLSGSLPPGV--PPDAYAELIRILRQQGAKVILDTSGE-----ALL---AALEAKPWLIKPNREELEALFGRELTT- 199 (310)
T ss_pred CEEEEeCCCCCCC--CHHHHHHHHHHHHhcCCeEEEECChH-----HHH---HHHccCCcEEecCHHHHHHHhCCCCCC-
Confidence 4477888743211 123455666666653 22333 222 23333332 33344444455887765
Q ss_pred hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCC
Q 015543 122 RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGP 177 (405)
Q Consensus 122 ~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~ 177 (405)
..++.+.+++|...+|..-||++|...- + |+ .+++++++.+|+.+
T Consensus 200 ~~d~i~~a~~l~~~g~~~ViVSlG~~Ga----l---~~----~~~~~~~a~~p~~~ 244 (310)
T COG1105 200 LEDVIKAARELLAEGIENVIVSLGADGA----L---LV----TAEGVYFASPPKVQ 244 (310)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEecCccc----E---EE----ccCCeEEEeCCCcc
Confidence 4488899999999999999999999872 1 11 24688999977754
No 244
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=24.85 E-value=1.4e+02 Score=31.94 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=29.0
Q ss_pred EEEecCCCC-----CChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015543 111 IVFAGSPVK-----YDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (405)
Q Consensus 111 VvFvgSpi~-----~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~ 160 (405)
+||+++|.+ -..+.|..+|..+||+++ |.+.+++ .+.|+-
T Consensus 175 ~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~----lvisDev------Ye~~v~ 219 (420)
T KOG0257|consen 175 AIILNTPHNPTGKVFSREELERIAELCKKHGL----LVISDEV------YEWLVY 219 (420)
T ss_pred EEEEeCCCCCcCcccCHHHHHHHHHHHHHCCE----EEEEhhH------hHHHhh
Confidence 445588886 268899999999999993 4444544 577764
No 245
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=24.80 E-value=4.4e+02 Score=28.02 Aligned_cols=112 Identities=20% Similarity=0.211 Sum_probs=67.8
Q ss_pred EEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCC-----CCHHHHHHhhccc-
Q 015543 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT-----TDLGKILACMHEL- 79 (405)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT-----~D~~kils~L~~l- 79 (405)
+++.+|+|.||.- | +||. =.|+++..++-+.+. +..|+-. |+..| .|+...+..+...
T Consensus 221 lvvL~DVSGSm~~--y--s~~~------L~l~hAl~q~~~R~~--~F~F~TR----Lt~vT~~l~~rD~~~Al~~~~a~v 284 (395)
T COG3552 221 LVVLCDVSGSMSG--Y--SRIF------LHLLHALRQQRSRVH--VFLFGTR----LTRVTHMLRERDLEDALRRLSAQV 284 (395)
T ss_pred eEEEEecccchhh--h--HHHH------HHHHHHHHhccccee--EEEeech----HHHHHHHhccCCHHHHHHHHHhhc
Confidence 6888999999952 2 3332 246666667777777 5566533 33333 3555555544432
Q ss_pred -ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHh
Q 015543 80 -DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKK 134 (405)
Q Consensus 80 -~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKk 134 (405)
.-.|++-+++.+.- .+.--|+..=..+..|||++++--..+...+.....+|.+
T Consensus 285 ~dw~ggTrig~tl~a-F~~~~~~~~L~~gA~VlilsDg~drd~~~~l~~~~~rl~r 339 (395)
T COG3552 285 KDWDGGTRIGNTLAA-FLRRWHGNVLSGGAVVLILSDGLDRDDIPELVTAMARLRR 339 (395)
T ss_pred ccccCCcchhHHHHH-HHccccccccCCceEEEEEecccccCCchHHHHHHHHHHH
Confidence 34688888887642 2222244344456778888888766677777777666654
No 246
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=24.65 E-value=4.7e+02 Score=28.16 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE--eCCCC-CCcHHHHHHHHHHHcC
Q 015543 88 AAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN--FGEDD-DGKPEKLEALLAAVNN 164 (405)
Q Consensus 88 ~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~--FG~e~-~~n~~~L~~f~~~vn~ 164 (405)
.-|-+++..+|+|...+. --|.||+- .|+..+..+.++++-+.-.+.||+ |.+.. -.|....+........
T Consensus 91 ~LG~~~~~~aL~~~~~~~---~~~~Fv~n---id~~~~~~~l~~i~~~~tl~iviSKSGtT~Et~~n~~~~r~~~~~~~~ 164 (446)
T COG0166 91 DLGPRAVTEALRPYAPNG---PRVHFVSN---VDPTYLAEVLKKLDPETTLFIVISKSGTTLETLTNFRLARKWLEKKEE 164 (446)
T ss_pred HHHHHHHHHHhhhhccCC---CceEEecC---CCchhhhHHHhccCcccEEEEEEeCCCCcHHHHHHHHHHHHHHHhhhh
Confidence 346788899999853322 23556655 367777777777776668888888 44422 1222333333221111
Q ss_pred CCCcEEEEecCCCch
Q 015543 165 NDSSHLVHVPTGPNA 179 (405)
Q Consensus 165 ~d~Shlv~vp~g~~l 179 (405)
--..||+++......
T Consensus 165 ~~~~~~v~~~~~~~~ 179 (446)
T COG0166 165 AAKKHFVATSTNGGA 179 (446)
T ss_pred hhhcEEEEEcCCchH
Confidence 125689888776433
No 247
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=24.63 E-value=2.4e+02 Score=22.76 Aligned_cols=27 Identities=7% Similarity=0.062 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHhCC---ceEEEEEeCCCC
Q 015543 122 RKVMEMIGKKLKKNS---VAIDIVNFGEDD 148 (405)
Q Consensus 122 ~~~l~~~akkLKknn---I~VdII~FG~e~ 148 (405)
....+.++..+...+ ..|.||-+|+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~v~v~~~g~gv 46 (122)
T PF02635_consen 17 AKIALRLANAAAAMGDYGHDVVVFFHGDGV 46 (122)
T ss_dssp HHHHHHHHHHHHHTTHTTSEEEEEE-GGGG
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEEchHH
Confidence 344555556666666 666666666544
No 248
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=24.62 E-value=2.3e+02 Score=29.31 Aligned_cols=62 Identities=23% Similarity=0.227 Sum_probs=42.7
Q ss_pred CCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChh--------------HH--------HHHHHHHHhCCceE
Q 015543 82 GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRK--------------VM--------EMIGKKLKKNSVAI 139 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~--------------~l--------~~~akkLKknnI~V 139 (405)
+|-+++...|.+|+.|=++ .=+-.|-|-.|..=.||+ .| ..+.+.||.++|.+
T Consensus 52 ~g~~~~~~~~~~akrak~~-----Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~p 126 (332)
T PF07745_consen 52 GGYNDLEDVIALAKRAKAA-----GMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTP 126 (332)
T ss_dssp TTTTSHHHHHHHHHHHHHT-----T-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--E
T ss_pred cccCCHHHHHHHHHHHHHC-----CCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCc
Confidence 6889999999999987654 334556677777533333 22 34558999999999
Q ss_pred EEEEeCCCC
Q 015543 140 DIVNFGEDD 148 (405)
Q Consensus 140 dII~FG~e~ 148 (405)
++|-.|-|.
T Consensus 127 d~VQVGNEi 135 (332)
T PF07745_consen 127 DMVQVGNEI 135 (332)
T ss_dssp SEEEESSSG
T ss_pred cEEEeCccc
Confidence 999999985
No 249
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=24.62 E-value=1.2e+02 Score=28.78 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=24.6
Q ss_pred CCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015543 106 QRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~ 143 (405)
..-|+++|.-.. +.++..+++++|...+|.+-.|+
T Consensus 81 ~~DRVllfs~~~---~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 81 ETDRVLLFSPFS---TDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp TT-EEEEEES-S-----HHHHHHHHHHHHHT--EEEEE
T ss_pred ccceEEEEeCCC---CCHHHHHHHHHHHHCCCCEEEEE
Confidence 567888885444 46689999999999999888888
No 250
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=24.40 E-value=4.9e+02 Score=23.68 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=36.9
Q ss_pred EEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEec
Q 015543 111 IVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVP 174 (405)
Q Consensus 111 VvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp 174 (405)
|.|+|+. ++.+.+++.+|++.-=.+.|+|+-..-+ +..-.+.+++.+|..+--.+++-.
T Consensus 51 ifllG~~----~~~~~~~~~~l~~~yP~l~ivg~~~g~f-~~~~~~~i~~~I~~~~pdiv~vgl 109 (172)
T PF03808_consen 51 IFLLGGS----EEVLEKAAANLRRRYPGLRIVGYHHGYF-DEEEEEAIINRINASGPDIVFVGL 109 (172)
T ss_pred EEEEeCC----HHHHHHHHHHHHHHCCCeEEEEecCCCC-ChhhHHHHHHHHHHcCCCEEEEEC
Confidence 4555665 7778888999999877778887655431 334556666666654433443333
No 251
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=24.29 E-value=2.7e+02 Score=28.40 Aligned_cols=49 Identities=8% Similarity=-0.016 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 123 KVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 123 ~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
....+.++.|++.+|.+.||.+-.-..-..+.|.+.++++ .++|+|-.+
T Consensus 214 ~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t-----~~vv~vEE~ 262 (327)
T CHL00144 214 HHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKT-----HKVLIVEEC 262 (327)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhh-----CcEEEEECC
Confidence 3567888999999999999999885533444555555544 367777664
No 252
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=24.24 E-value=8.3e+02 Score=26.24 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=60.4
Q ss_pred ceEEEEE-eCChhhcCCCCCCcHHHHHHHHHHHHH---HhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc
Q 015543 4 EATMICI-DNSEWMRNGDYSPSRLRAQADAVSLIC---GAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL 79 (405)
Q Consensus 4 Ea~~IvI-DnSesMrngD~~PtRl~Aq~dAv~~fv---~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l 79 (405)
.|+|+|| |+|.||.. +-++-++.|+ .-|+.-..+ +|=||-++...-..-|.=| -.-..
T Consensus 246 ~AVmfclMDvSGSM~~---------~~KdlAkrFF~lL~~FL~~kYe-nveivfIrHht~A~EVdE~--------dFF~~ 307 (423)
T COG2718 246 NAVMFCLMDVSGSMDQ---------SEKDLAKRFFFLLYLFLRRKYE-NVEIVFIRHHTEAKEVDET--------DFFYS 307 (423)
T ss_pred ceEEEEEEecCCCcch---------HHHHHHHHHHHHHHHHHhcccc-eeEEEEEeecCcceecchh--------hceee
Confidence 3677775 99999973 3344444333 223334444 5777777654311111111 11122
Q ss_pred ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCC---C-ChhHHHHHH
Q 015543 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK---Y-DRKVMEMIG 129 (405)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~---~-d~~~l~~~a 129 (405)
+-+|++-+.+||+.++..++.|-+ .+.=-|-.|-.|.-. . ++..+.-+.
T Consensus 308 ~esGGTivSSAl~~m~evi~ErYp-~aeWNIY~fqaSDGDN~~dDserc~~ll~ 360 (423)
T COG2718 308 QESGGTIVSSALKLMLEVIKERYP-PAEWNIYAFQASDGDNWADDSERCVELLA 360 (423)
T ss_pred cCCCCeEeHHHHHHHHHHHHhhCC-hhheeeeeeeecCCccccCCCHHHHHHHH
Confidence 347888999999999999999854 344445555544432 2 344455555
No 253
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=24.23 E-value=1.9e+02 Score=21.21 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=26.0
Q ss_pred EEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 111 IVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 111 VvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
|-+++- ...++-+.++.+.|.+.+|.|+.|..+.
T Consensus 4 v~v~~~--~~~~g~~~~i~~~L~~~~I~i~~i~~~~ 37 (75)
T cd04913 4 ITLRGV--PDKPGVAAKIFGALAEANINVDMIVQNV 37 (75)
T ss_pred EEECCC--CCCCcHHHHHHHHHHHcCCeEEEEEeCC
Confidence 334443 3457888899999999999999998654
No 254
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=23.95 E-value=2.9e+02 Score=25.19 Aligned_cols=60 Identities=23% Similarity=0.266 Sum_probs=36.8
Q ss_pred EEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 109 RIIVFAGSPVKY--DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 109 RIVvFvgSpi~~--d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
+|-|| ||.... ..+...++++.|.++++ .+|+ |.... ++.+.++.+-..++-.+.++|.+
T Consensus 3 ~I~V~-gss~~~~~~~~~A~~lg~~La~~g~--~lv~-Gg~~G----lM~a~a~ga~~~gg~viGVlp~~ 64 (159)
T TIGR00725 3 QIGVI-GSSNKSEELYEIAYRLGKELAKKGH--ILIN-GGRTG----VMEAVSKGAREAGGLVVGILPDE 64 (159)
T ss_pred EEEEE-eCCCCChHHHHHHHHHHHHHHHCCC--EEEc-CCchh----HHHHHHHHHHHCCCeEEEECChh
Confidence 44445 555321 23356788999999997 4555 65443 78888877765555455555543
No 255
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=23.91 E-value=4.4e+02 Score=24.00 Aligned_cols=80 Identities=19% Similarity=0.353 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCC
Q 015543 88 AAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS 167 (405)
Q Consensus 88 ~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~ 167 (405)
.+|..+....|++... ...||. |+|+. ++.+.+++++|++.-=.+.|+|+-..- -...-...+++.+|...
T Consensus 29 ~~g~dl~~~ll~~~~~--~~~~v~-llG~~----~~~~~~~~~~l~~~yp~l~i~g~~~g~-~~~~~~~~i~~~I~~~~- 99 (171)
T cd06533 29 VTGSDLMPALLELAAQ--KGLRVF-LLGAK----PEVLEKAAERLRARYPGLKIVGYHHGY-FGPEEEEEIIERINASG- 99 (171)
T ss_pred cCcHHHHHHHHHHHHH--cCCeEE-EECCC----HHHHHHHHHHHHHHCCCcEEEEecCCC-CChhhHHHHHHHHHHcC-
Confidence 3455555555655322 245554 44654 888899999999998888899854333 22233444667776544
Q ss_pred cEEEEecCC
Q 015543 168 SHLVHVPTG 176 (405)
Q Consensus 168 Shlv~vp~g 176 (405)
-++|.|--|
T Consensus 100 pdiv~vglG 108 (171)
T cd06533 100 ADILFVGLG 108 (171)
T ss_pred CCEEEEECC
Confidence 445544333
No 256
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=23.89 E-value=1.3e+02 Score=27.77 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=30.2
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
+.|+-|+|...+.=---+.+++++|+..|++|.+|-=--
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 468888888765433457799999999999999996543
No 257
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=23.84 E-value=1.3e+02 Score=30.88 Aligned_cols=13 Identities=31% Similarity=0.370 Sum_probs=8.5
Q ss_pred cHHHHHHHHHHHc
Q 015543 151 KPEKLEALLAAVN 163 (405)
Q Consensus 151 n~~~L~~f~~~vn 163 (405)
++..+++++..+.
T Consensus 218 Ktt~~~~l~~~l~ 230 (366)
T PRK14489 218 KTTLLEKLIPELI 230 (366)
T ss_pred HHHHHHHHHHHHH
Confidence 5666677776664
No 258
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=23.82 E-value=2.4e+02 Score=27.48 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 85 MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
-....||.+-...||+ .-.+++|+|.+.++.....--..+-++||..+|++.+...=...
T Consensus 110 E~t~~Al~lil~~lk~----~~~k~vi~L~d~~vs~SGel~~~i~~~mK~~~I~g~~~lvk~~D 169 (211)
T COG2454 110 EKTDKALDLLLEFLKD----VEPKSVIFLFDAPVSKSGELAGRIEEKMKSLGIPGEASLVKNAD 169 (211)
T ss_pred hHHHHHHHHHHHHHHH----cCCceEEEEeCCCCCccHHHHHHHHHHHHhcCCCceeEeccCcC
Confidence 4567888888899998 35566677779987654444456677899999998887765555
No 259
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=23.79 E-value=3.2e+02 Score=30.07 Aligned_cols=132 Identities=15% Similarity=0.270 Sum_probs=0.0
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcE-EEEE---ecCCCceEEEC--CCCCHHHHHHhhcc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTV-GILT---MGGKGVRVLTT--PTTDLGKILACMHE 78 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~V-Glvt---mag~~~~vLvt--lT~D~~kils~L~~ 78 (405)
.+-+|||||.|||-.-+. .+..++-.+.+..-+-+-.+-| |+-| .+|...+.+.- .+..++.+..-.|.
T Consensus 415 vVtlviDnSGSMrGRpIt-----vAatcAdilArtLeRcgVk~eIlGFTT~awkGg~sre~wlk~Gkp~~pgrlndlrhi 489 (620)
T COG4547 415 VVTLVIDNSGSMRGRPIT-----VAATCADILARTLERCGVKVEILGFTTKAWKGGQSRETWLKRGKPAFPGRLNDLRHI 489 (620)
T ss_pred hheeeeccCCCcCCccee-----hhHHHHHHHHHHHHHcCCceEEeeeeeccccCCccHHHHHhcCCCCCchhhhhHHHH
Q ss_pred cc----------------------cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCC-----------hhHH
Q 015543 79 LD----------------------IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYD-----------RKVM 125 (405)
Q Consensus 79 l~----------------------~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d-----------~~~l 125 (405)
+- +.-++. +.+|-.|+.-|--|+. +++.+++++++---.+ +.+|
T Consensus 490 iyksAdaPwrRARrnlGlmmreglLkeNiD-GEal~wah~rl~gRpE--qrkIlmmiSDGAPvddstlsvnpGnylerHL 566 (620)
T COG4547 490 IYKSADAPWRRARRNLGLMMREGLLKENID-GEALMWAHQRLIGRPE--QRKILMMISDGAPVDDSTLSVNPGNYLERHL 566 (620)
T ss_pred HHhccCCHHHHHHhhcchhhhcchhhccCC-hHHHHHHHHHHhcChh--hceEEEEecCCCcccccccccCCchHHHHHH
Q ss_pred HHHHHHHHhCCceEEEEEeC
Q 015543 126 EMIGKKLKKNSVAIDIVNFG 145 (405)
Q Consensus 126 ~~~akkLKknnI~VdII~FG 145 (405)
-.+++.. .-.-.|+.+.+|
T Consensus 567 RaVieeI-EtrSpveLlAIG 585 (620)
T COG4547 567 RAVIEEI-ETRSPVELLAIG 585 (620)
T ss_pred HHHHHHH-hcCCchhheeee
No 260
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=23.67 E-value=5.9e+02 Score=25.81 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=31.1
Q ss_pred HHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCCchh
Q 015543 127 MIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNAL 180 (405)
Q Consensus 127 ~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~~lL 180 (405)
.+++.++..++.+- |.-|... |. --+.|+++++..+-.+++++|++.+++
T Consensus 107 g~~~lf~~~Gv~~v-i~ggqt~--nP-S~~dl~~Ai~~~~a~~VivLPNn~ni~ 156 (313)
T PF13684_consen 107 GLAELFRSLGVDVV-ISGGQTM--NP-STEDLLNAIEKVGADEVIVLPNNKNII 156 (313)
T ss_pred cHHHHHHhCCCeEE-EeCCCCC--CC-CHHHHHHHHHhCCCCeEEEEeCCchHH
Confidence 35677788887433 3334332 21 224666666666778999999987643
No 261
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.64 E-value=2.3e+02 Score=19.71 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=23.8
Q ss_pred CChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 120 YDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 120 ~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
..++-+.++...|.+++|.++.|..+..
T Consensus 10 ~~~~~~~~i~~~L~~~~i~i~~i~~~~~ 37 (61)
T cd04891 10 DKPGVAAKIFSALAEAGINVDMIVQSVS 37 (61)
T ss_pred CCCcHHHHHHHHHHHcCCcEEEEEEcCC
Confidence 3577888999999999999999988753
No 262
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=23.58 E-value=57 Score=35.22 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC---CcHHHHHHHHHHHcCC
Q 015543 89 AGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDD---GKPEKLEALLAAVNNN 165 (405)
Q Consensus 89 ~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~---~n~~~L~~f~~~vn~~ 165 (405)
-|-+++..+|++... ..+.|.|+.. .|+..+..+.+.|.-...-|-||+=.-... .|...++.+..+-.+.
T Consensus 109 LGp~~~~~al~~~~~---~~~~~~f~~n---~Dp~~l~~~l~~ld~~~Tl~iViSKSgtT~ET~~n~~~~~~~l~~~~~~ 182 (486)
T PF00342_consen 109 LGPRALYEALKPYFS---NPPRLHFLDN---VDPADLARLLERLDPETTLFIVISKSGTTIETLANFRIAREWLEKKGGD 182 (486)
T ss_dssp HHHHHHHHHTGGGTT---SSCEEEEESS---SSHHHHHHHHTTSTGGGEEEEEEESSST-HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhhcc---cceEEEEecc---CChHHHHHHHhcCCCccEEEEEecCCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 467888889987432 2355566544 489999999999988888888887442221 2233344433333331
Q ss_pred -C--CcEEEEecCCCchh
Q 015543 166 -D--SSHLVHVPTGPNAL 180 (405)
Q Consensus 166 -d--~Shlv~vp~g~~lL 180 (405)
. ..|+|.|-..+..+
T Consensus 183 ~~~~~~h~vavT~~~~~~ 200 (486)
T PF00342_consen 183 KEEAAKHFVAVTDNGSGA 200 (486)
T ss_dssp GGGGGGTEEEEESSHHHH
T ss_pred cccccceEEEeCCCchHH
Confidence 1 57999887654333
No 263
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=23.56 E-value=4.7e+02 Score=22.40 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=49.8
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCCchhhhhh
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVL 184 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~~lLsD~l 184 (405)
++..+|+-+|-.... ++..+...++.|.+.+++-=+|..|.....=.+-+-.+|++.+ ==++.+|..- .++|++
T Consensus 41 ~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~----lPli~ip~~~-~f~~I~ 115 (123)
T PF07905_consen 41 RGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELG----LPLIEIPWEV-PFSDIT 115 (123)
T ss_pred CCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcC----CCEEEeCCCC-CHHHHH
Confidence 344555555666666 6778999999999999999999888544322344445555443 2477777764 366765
No 264
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.41 E-value=6.7e+02 Score=25.37 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=51.0
Q ss_pred HHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcE-
Q 015543 91 IQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSH- 169 (405)
Q Consensus 91 L~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Sh- 169 (405)
|..-...|+.+ + ..++-.||.+|.. ..+..=.....|.+++-||.+.++-|.+.. ...+ |...++++|.++.-|
T Consensus 19 l~~~v~~l~~~-g-~~P~Laii~vg~d-~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~e-l~~~I~~lN~D~~V~G 93 (284)
T PRK14190 19 LKEEVVKLKEQ-G-IVPGLAVILVGDD-PASHSYVRGKKKAAEKVGIYSELYEFPADI-TEEE-LLALIDRLNADPRING 93 (284)
T ss_pred HHHHHHHHHhC-C-CCCeEEEEEeCCC-HHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHhCCCCCCE
Confidence 33334445543 1 1223333344333 333334446688999999999999999877 4544 445667898776544
Q ss_pred -EEEecCCCchhhhhhh
Q 015543 170 -LVHVPTGPNALSDVLI 185 (405)
Q Consensus 170 -lv~vp~g~~lLsD~l~ 185 (405)
+|-.|--.++-.+.++
T Consensus 94 Ilvq~PLp~~i~~~~i~ 110 (284)
T PRK14190 94 ILVQLPLPKHIDEKAVI 110 (284)
T ss_pred EEEeCCCCCCCCHHHHH
Confidence 4444533354344443
No 265
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=23.41 E-value=3.9e+02 Score=22.57 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=33.3
Q ss_pred EEEe--cCCCCCChhHHHHHHHHHHhCC-ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEec
Q 015543 111 IVFA--GSPVKYDRKVMEMIGKKLKKNS-VAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVP 174 (405)
Q Consensus 111 VvFv--gSpi~~d~~~l~~~akkLKknn-I~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp 174 (405)
|||+ ||+... ......+++.+++.. .+|. ++|=+.. +-+...++++...+-.+++.+|
T Consensus 3 illvgHGSr~~~-~~~~~~l~~~l~~~~~~~v~-~~~lE~~----P~i~~~l~~l~~~G~~~i~lvP 63 (103)
T cd03413 3 VVFMGHGTDHPS-NAVYAALEYVLREEDPANVF-VGTVEGY----PGLDDVLAKLKKAGIKKVTLMP 63 (103)
T ss_pred EEEEECCCCchh-hhHHHHHHHHHHhcCCCcEE-EEEEcCC----CCHHHHHHHHHHcCCCEEEEEe
Confidence 4455 566544 467778888887754 3343 3444422 2345555555444556788777
No 266
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=23.28 E-value=50 Score=26.17 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=16.9
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015543 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~ 143 (405)
.++||++++... .......++.++|...+|+|.+|.
T Consensus 46 ~~~Vii~~D~D~-~G~~~a~~i~~~l~~~gi~v~~v~ 81 (81)
T PF13662_consen 46 VKEVIIAFDNDK-AGEKAAQKIAKKLLPLGIRVTRVA 81 (81)
T ss_dssp -SEEEEEEESSH-HHHHHHHHHHHHHG----------
T ss_pred CceEEEEeCcCH-HHHHHHHHHHHHHHhhccccccCC
Confidence 567777766653 234556788888999999998873
No 267
>KOG2648 consensus Diphthamide biosynthesis protein [Translation, ribosomal structure and biogenesis]
Probab=23.25 E-value=1.7e+02 Score=31.64 Aligned_cols=98 Identities=19% Similarity=0.211 Sum_probs=64.7
Q ss_pred cccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 015543 84 EMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (405)
Q Consensus 84 ~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~v 162 (405)
+.....++.--+..+-+|- ...+.|=|++|+.--. ..+-+..+-+++|+.|+..++|.+|. -|..||..|-+ +
T Consensus 245 E~y~~~~m~~rR~~~veka--rdA~~iGlivGTLG~qg~~~vl~~L~~~~~~~Gkk~y~l~~g~---inPaKLAnF~e-I 318 (453)
T KOG2648|consen 245 ESYDHSRMLRRRYYLVEKA--RDARTIGLIVGTLGRQGNREVLEHLRKLLKAAGKKSYVLALGE---INPAKLANFPE-I 318 (453)
T ss_pred cccchHHHHHHHHHHHHHH--hcCCeEEEEEecccccCCHHHHHHHHHHHHHcCCceEEEEecC---CCHHHhcCCcc-c
Confidence 4444556666666555543 3556677778888754 78888999999999999999999998 46789998865 4
Q ss_pred cCCCCcEEEEecCCCchhhhhhhcCcccc
Q 015543 163 NNNDSSHLVHVPTGPNALSDVLISSPVFT 191 (405)
Q Consensus 163 n~~d~Shlv~vp~g~~lLsD~l~sSpI~~ 191 (405)
|--.+|.+|-- .+..-.-+..||++
T Consensus 319 ---DvfV~iaCp~l-sid~s~~F~kPilt 343 (453)
T KOG2648|consen 319 ---DVFVQIACPRL-SIDWSKEFYKPLLT 343 (453)
T ss_pred ---cEEEEEeCccc-chhhhhhhcccccc
Confidence 32233333431 22333344567775
No 268
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=23.17 E-value=3.4e+02 Score=26.30 Aligned_cols=57 Identities=18% Similarity=0.062 Sum_probs=34.4
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCC--cHHHHHHHHHHHc
Q 015543 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDG--KPEKLEALLAAVN 163 (405)
Q Consensus 107 ~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~~--n~~~L~~f~~~vn 163 (405)
...+|+|+|..... +...++++++++++. ++.+-+||=|..... ....++.+++..+
T Consensus 219 ~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~ 280 (398)
T cd03800 219 DKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELG 280 (398)
T ss_pred CCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcC
Confidence 45678888876543 667888999998875 466666664443210 0123456666543
No 269
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=23.17 E-value=1.5e+02 Score=30.74 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=32.7
Q ss_pred CCCeEEEEEec-CCCCC---ChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 105 NQRQRIIVFAG-SPVKY---DRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 105 ~~~~RIVvFvg-Spi~~---d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
+.++||++|+. +|... -...+..+++.|++.|..|.||+...
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 57799999985 33322 24578899999999999999998654
No 270
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.14 E-value=3.9e+02 Score=28.94 Aligned_cols=54 Identities=9% Similarity=0.045 Sum_probs=37.5
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~ 164 (405)
+-.|+++++|.+. .++..-.++.|+..+..+-|.=+=. . .|++.++.|+.+..+
T Consensus 266 ~P~V~Ilcgpgnn-ggdg~v~gRHL~~~G~~~vi~~pk~-s-~~~~~~~~L~~q~~~ 319 (453)
T KOG2585|consen 266 WPLVAILCGPGNN-GGDGLVCGRHLAQHGYTPVIYYPKR-S-LNVDLYKSLVKQCDG 319 (453)
T ss_pred CceEEEEeCCCCc-cchhHHHHHHHHHcCceeEEEeecC-c-cchhHHHHHHHHhcC
Confidence 3356666777654 3444449999999997666555543 3 367889999998864
No 271
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.08 E-value=7.6e+02 Score=24.95 Aligned_cols=75 Identities=9% Similarity=0.123 Sum_probs=45.9
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEe--cCCCchhhhhhh
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHV--PTGPNALSDVLI 185 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~v--p~g~~lLsD~l~ 185 (405)
+-.||.+|.. ..+..=.....|.+++-||.+..+-|.+.. ...+++ ..++.+|.++.-|=+.| |--.|+-...++
T Consensus 34 ~Laii~vg~d-~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~el~-~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~ 110 (278)
T PRK14172 34 KIASILVGND-GGSIYYMNNQEKVANSLGIDFKKIKLDESI-SEEDLI-NEIEELNKDNNVHGIMLQLPLPKHLDEKKIT 110 (278)
T ss_pred eEEEEEeCCC-HHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCeEEEcCCCCCCCCHHHHH
Confidence 3334444433 222333345678999999999999999887 555544 55688998776664444 433354333343
No 272
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=22.99 E-value=3.5e+02 Score=22.24 Aligned_cols=55 Identities=15% Similarity=0.277 Sum_probs=35.2
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCCc
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPN 178 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~~ 178 (405)
.-+|+|..+. ...++..+++.+|+.+++| |.+-.... + .+..++ .+.+.++.++.
T Consensus 55 d~vi~is~sg---~~~~~~~~~~~ak~~g~~v--i~iT~~~~-~--~l~~~a--------d~~l~~~~~~~ 109 (131)
T PF01380_consen 55 DLVIIISYSG---ETRELIELLRFAKERGAPV--ILITSNSE-S--PLARLA--------DIVLYIPTGEE 109 (131)
T ss_dssp EEEEEEESSS---TTHHHHHHHHHHHHTTSEE--EEEESSTT-S--HHHHHS--------SEEEEEESSCG
T ss_pred ceeEeeeccc---cchhhhhhhHHHHhcCCeE--EEEeCCCC-C--chhhhC--------CEEEEecCCCc
Confidence 4455554344 4578889999999999877 66665442 2 444443 26777777764
No 273
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.96 E-value=1.9e+02 Score=22.10 Aligned_cols=34 Identities=9% Similarity=0.014 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015543 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~ 143 (405)
.--+|+|..|.. ..++..+++++|++++++-.|.
T Consensus 48 ~d~~i~iS~sg~---t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 48 GDVVIALSYSGR---TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCEEEEEECCCC---CHHHHHHHHHHHHcCCeEEEEe
Confidence 334444444442 3568888999999998765554
No 274
>PRK09065 glutamine amidotransferase; Provisional
Probab=22.81 E-value=94 Score=29.95 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=32.2
Q ss_pred EEEecCCCCC-Ch----hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015543 111 IVFAGSPVKY-DR----KVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (405)
Q Consensus 111 VvFvgSpi~~-d~----~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f 158 (405)
||+.|||.+. +. ..+.++++.+.+.+++|--|+||-.. ++.+|
T Consensus 58 vvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Ql-----la~al 105 (237)
T PRK09065 58 VIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQL-----LAHAL 105 (237)
T ss_pred EEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHH-----HHHHc
Confidence 7788999764 21 34567778888899999999999766 55555
No 275
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.76 E-value=8.1e+02 Score=24.84 Aligned_cols=92 Identities=14% Similarity=0.203 Sum_probs=52.5
Q ss_pred HHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcE
Q 015543 90 GIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSH 169 (405)
Q Consensus 90 gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Sh 169 (405)
-|.-....|+.+.+ ..++-.||.+|.. ..+..=.....|.+++-||.+.++-|.+.. ...++ ...++++|.++.-|
T Consensus 16 ~l~~~v~~l~~~~g-~~P~Laii~vg~d-~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~~l-~~~I~~lN~d~~V~ 91 (286)
T PRK14184 16 ELKTEVAALTARHG-RAPGLAVILVGED-PASQVYVRNKERACEDAGIVSEAFRLPADT-TQEEL-EDLIAELNARPDID 91 (286)
T ss_pred HHHHHHHHHHhccC-CCCEEEEEEeCCC-hhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHH-HHHHHHHhCCCcCc
Confidence 33444445554322 2233334444433 333333446688999999999999999877 44444 46668898776555
Q ss_pred --EEEecCCCchhhhhhh
Q 015543 170 --LVHVPTGPNALSDVLI 185 (405)
Q Consensus 170 --lv~vp~g~~lLsD~l~ 185 (405)
+|-.|--+|+-...++
T Consensus 92 GIlvqlPLP~~id~~~i~ 109 (286)
T PRK14184 92 GILLQLPLPKGLDSQRCL 109 (286)
T ss_pred eEEEecCCCCCCCHHHHH
Confidence 3333433354444443
No 276
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=22.75 E-value=3.8e+02 Score=22.83 Aligned_cols=54 Identities=28% Similarity=0.613 Sum_probs=29.4
Q ss_pred cCCCCCChhHHHHHHHHHHhCC--ceEE--EEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEec
Q 015543 115 GSPVKYDRKVMEMIGKKLKKNS--VAID--IVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVP 174 (405)
Q Consensus 115 gSpi~~d~~~l~~~akkLKknn--I~Vd--II~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp 174 (405)
||........+..++..+++.. ..|. .+.|+... =.+.+..+. ..+-.+++++|
T Consensus 10 GS~~~~~~~~~~~~~~~l~~~~~~~~v~~afle~~~P~--l~~~l~~l~----~~g~~~v~vvP 67 (126)
T PRK00923 10 GSRLPYNKEVVTKIAEKIKEKHPFYIVEVGFMEFNEPT--IPEALKKLI----GTGADKIIVVP 67 (126)
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCCeEEEEEEEcCCCC--HHHHHHHHH----HcCCCEEEEEc
Confidence 5654444567888898888742 2343 34444432 123344433 23456888887
No 277
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.59 E-value=2.5e+02 Score=22.22 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=27.0
Q ss_pred EEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeC
Q 015543 111 IVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFG 145 (405)
Q Consensus 111 VvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG 145 (405)
|=+.+.....+++-+.++-..|.+++|.||.|.-+
T Consensus 4 i~i~~~~~~~~~g~~~~IF~~La~~~I~vDmI~~s 38 (75)
T cd04935 4 VSMETLGMWQQVGFLADVFAPFKKHGVSVDLVSTS 38 (75)
T ss_pred EEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEeC
Confidence 33334445567888889999999999999999753
No 278
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.54 E-value=7e+02 Score=25.29 Aligned_cols=91 Identities=13% Similarity=0.213 Sum_probs=53.8
Q ss_pred HHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcE-
Q 015543 91 IQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSH- 169 (405)
Q Consensus 91 L~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Sh- 169 (405)
|.--...||.+ . ..+ .++++.-+....+..=.....|.+++-||.+.++-|.+.. ...+++ ..++++|.++.-|
T Consensus 18 ik~~i~~l~~~-g-~~P-~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~el~-~~I~~lN~D~~V~G 92 (284)
T PRK14170 18 VTREVAELVKE-G-KKP-GLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENV-TEEKLL-SVVEELNEDKTIHG 92 (284)
T ss_pred HHHHHHHHHhC-C-CCC-eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCe
Confidence 33334456543 1 223 4444444443333444456788999999999999999887 555555 5668898876544
Q ss_pred -EEEecCCCchhhhhhhc
Q 015543 170 -LVHVPTGPNALSDVLIS 186 (405)
Q Consensus 170 -lv~vp~g~~lLsD~l~s 186 (405)
+|-.|--+|+-.+.++.
T Consensus 93 IivqlPlP~~i~~~~i~~ 110 (284)
T PRK14170 93 ILVQLPLPEHISEEKVID 110 (284)
T ss_pred EEEecCCCCCCCHHHHHh
Confidence 44445434544444433
No 279
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=22.46 E-value=1e+02 Score=23.73 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=28.9
Q ss_pred hcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015543 98 LKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (405)
Q Consensus 98 LKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~ 143 (405)
+..||.+.......+|+.-....+...+..+.+.|++.-..+.++|
T Consensus 30 I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~~~~~lG 75 (75)
T cd04880 30 IESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTEDVKVLG 75 (75)
T ss_pred EEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCeeEECC
Confidence 3456655555566666654433356778888888888766666543
No 280
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=22.45 E-value=1.3e+02 Score=30.39 Aligned_cols=132 Identities=20% Similarity=0.240 Sum_probs=68.5
Q ss_pred CChhhcCC-CCCCcH---H-HHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc---ccCC
Q 015543 12 NSEWMRNG-DYSPSR---L-RAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL---DIGG 83 (405)
Q Consensus 12 nSesMrng-D~~PtR---l-~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l---~~~G 83 (405)
+..|+.+. .+.|.. + ....+.+..++..|-+. |.|.. -.|+-.+-.+.+. -..++.. ..-|
T Consensus 86 ~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~------g~i~~----WDVvNE~i~~~~~-~~~~r~~~~~~~lG 154 (320)
T PF00331_consen 86 TPDWVFNLANGSPDEKEELRARLENHIKTVVTRYKDK------GRIYA----WDVVNEAIDDDGN-PGGLRDSPWYDALG 154 (320)
T ss_dssp S-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHTTTT------TTESE----EEEEES-B-TTSS-SSSBCTSHHHHHHT
T ss_pred ccceeeeccCCCcccHHHHHHHHHHHHHHHHhHhccc------cceEE----EEEeeecccCCCc-cccccCChhhhccc
Confidence 35677776 677765 3 34445666666665433 11111 2333333333220 0001110 1225
Q ss_pred cccHHHHHHHHHHHhcccCCCCCCeEEEEEe-cCCCCCC--hhHHHHHHHHHHhCCceEEEEEeCCCCCCc--HHHHHHH
Q 015543 84 EMNIAAGIQVAQLALKHRQNKNQRQRIIVFA-GSPVKYD--RKVMEMIGKKLKKNSVAIDIVNFGEDDDGK--PEKLEAL 158 (405)
Q Consensus 84 ~~sL~~gL~iA~lALKhr~~k~~~~RIVvFv-gSpi~~d--~~~l~~~akkLKknnI~VdII~FG~e~~~n--~~~L~~f 158 (405)
..-+..+++.|+.+... . .+|+ .-.+... ...++++++.|++.||+||.|||=.+.... .+-+..+
T Consensus 155 ~~yi~~aF~~A~~~~P~-------a--~L~~NDy~~~~~~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~~~~i~~~ 225 (320)
T PF00331_consen 155 PDYIADAFRAAREADPN-------A--KLFYNDYNIESPAKRDAYLNLVKDLKARGVPIDGIGLQSHFDAGYPPEQIWNA 225 (320)
T ss_dssp TCHHHHHHHHHHHHHTT-------S--EEEEEESSTTSTHHHHHHHHHHHHHHHTTHCS-EEEEEEEEETTSSHHHHHHH
T ss_pred HhHHHHHHHHHHHhCCC-------c--EEEeccccccchHHHHHHHHHHHHHHhCCCccceechhhccCCCCCHHHHHHH
Confidence 66678899999888762 2 3333 1111112 246899999999999999999996543211 2344444
Q ss_pred HHHHc
Q 015543 159 LAAVN 163 (405)
Q Consensus 159 ~~~vn 163 (405)
++...
T Consensus 226 l~~~~ 230 (320)
T PF00331_consen 226 LDRFA 230 (320)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 281
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=22.33 E-value=2.9e+02 Score=26.81 Aligned_cols=49 Identities=12% Similarity=-0.029 Sum_probs=36.1
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
-|||.|++..........+++.+.+.+++|--|++|-.. ++.+|..++.
T Consensus 58 givl~GG~~~~~~~~~~~~i~~~~~~~~PvlGIClG~Q~-----l~~~~g~~~~ 106 (235)
T cd01746 58 GILVPGGFGIRGVEGKILAIKYARENNIPFLGICLGMQL-----AVIEFARNVL 106 (235)
T ss_pred EEEECCCCCCcchhhHHHHHHHHHHCCceEEEEEhHHHH-----HHHHHHHHhc
Confidence 477778875443344556788888999999999999876 6677766554
No 282
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.32 E-value=7.4e+02 Score=25.07 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=46.7
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEe--cCCCchhhhhhhc
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHV--PTGPNALSDVLIS 186 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~v--p~g~~lLsD~l~s 186 (405)
.++++.-+....+..=.....|.+++-||.+.++-|.+.. ...+ |...++++|.++.-|=+.| |--.|+-.+.++.
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-t~~~-l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~ 109 (282)
T PRK14166 32 CLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENT-TQNE-LLALINTLNHDDSVHGILVQLPLPDHICKDLILE 109 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 3433433332333444456688999999999999999877 4545 4456678987766554444 4333544444443
No 283
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=22.27 E-value=44 Score=37.18 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=19.2
Q ss_pred EEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 111 IVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 111 VvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
|||+.++...--..+.++|++.+..+..+.+|++|...
T Consensus 119 il~~~s~g~Dp~~~i~~lA~~~~~~~~~~~~islG~~~ 156 (707)
T PF03028_consen 119 ILFILSPGSDPSSEIEQLAKKKGFGNKKLQSISLGSGQ 156 (707)
T ss_dssp EEEEE-TT--THHHHHHHHHCTT-----EEEEETTSHH
T ss_pred eEEEeCCCCChHHHHHHHHHHHhhhhhheeecCCCCch
Confidence 56666664433345666665544333788999998754
No 284
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=22.05 E-value=1.5e+02 Score=28.26 Aligned_cols=40 Identities=8% Similarity=0.121 Sum_probs=26.9
Q ss_pred eEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 108 QRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 108 ~RIVvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
++|++|..++... -+.....+++.|++.|+.|.++.+...
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 3566666665422 456677778888888888888776543
No 285
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=22.04 E-value=7e+02 Score=32.83 Aligned_cols=143 Identities=17% Similarity=0.210 Sum_probs=81.4
Q ss_pred eEEEEEeCChhhcCCCCCC---cHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCC----HHHHHHhhc
Q 015543 5 ATMICIDNSEWMRNGDYSP---SRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTD----LGKILACMH 77 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~P---tRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D----~~kils~L~ 77 (405)
-+||.||-|.||...--.- .-|....+|+..+ --.++.||-|+.. ++.+-+.-.. -|.-+ .-|
T Consensus 4394 qvmisiddsksmses~~~~la~etl~lvtkals~l--------e~g~iav~kfge~-~~~lh~fdkqfs~esg~~~-f~~ 4463 (4600)
T COG5271 4394 QVMISIDDSKSMSESGSTVLALETLALVTKALSLL--------EVGQIAVMKFGEQ-PELLHPFDKQFSSESGVQM-FSH 4463 (4600)
T ss_pred EEEEEecccccccccCceeeehHHHHHHHHHHHHH--------hhccEEEEecCCC-hhhhCchhhhhcchHHHHH-HHh
Confidence 3799999999998654332 2232333333332 3458899888754 7777664321 11110 000
Q ss_pred ccccCCcccHHHHHHHHHHHhc--ccC----CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCc
Q 015543 78 ELDIGGEMNIAAGIQVAQLALK--HRQ----NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGK 151 (405)
Q Consensus 78 ~l~~~G~~sL~~gL~iA~lALK--hr~----~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n 151 (405)
-.--.-++ +-+..|-.+.| .|- .+..+|-.||++++- -+|...|.++.+++..++|-+-.|-+-.-. .|
T Consensus 4464 f~feqs~t---nv~~l~~~s~k~f~~a~t~~h~d~~qleiiisdgi-cedhdsi~kllrra~e~kvmivfvild~v~-t~ 4538 (4600)
T COG5271 4464 FTFEQSNT---NVLALADASMKCFNYANTASHHDIRQLEIIISDGI-CEDHDSIRKLLRRAQEEKVMIVFVILDNVN-TQ 4538 (4600)
T ss_pred hchhcccc---cHHHHHHHHHHHHHHhhhhcccchheeEEEeecCc-ccchHHHHHHHHHhhhcceEEEEEEecCCc-cc
Confidence 00001112 22233332222 000 124677778887765 568899999999999999988777776655 56
Q ss_pred HHHHHHHHHHHcC
Q 015543 152 PEKLEALLAAVNN 164 (405)
Q Consensus 152 ~~~L~~f~~~vn~ 164 (405)
..||.. .+|++
T Consensus 4539 ~sildi--~kv~y 4549 (4600)
T COG5271 4539 KSILDI--KKVYY 4549 (4600)
T ss_pred hhhhhh--Hhhcc
Confidence 666654 56764
No 286
>PRK14974 cell division protein FtsY; Provisional
Probab=22.02 E-value=5.3e+02 Score=26.54 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=35.0
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 015543 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~v 162 (405)
+.++|+|+|.+-..=.-.+.+++..|++.+.+|-+|+--.--..-.+-|+.+++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~l 194 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERL 194 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHc
Confidence 45789998876543333577899999999988877653211101124566666654
No 287
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=21.92 E-value=1.8e+02 Score=26.66 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHHhccc-CCCCCCeEEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 86 NIAAGIQVAQLALKHR-QNKNQRQRIIVFAGSPVKY--DRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 86 sL~~gL~iA~lALKhr-~~k~~~~RIVvFvgSpi~~--d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
.|.+.|.--...|+.. +....+.+|+++-|+.... .+.-..+++..|++++|+.+|.++-.++
T Consensus 81 ~La~~l~~~~~~l~~~~~~~~~P~~IsLvGC~l~~~~~~~~fa~~f~~~L~~~gi~~~V~A~~~~v 146 (157)
T PF11713_consen 81 ELANKLIKFKQQLKQKYGINISPKKISLVGCSLADNNKQESFALQFAQALKKQGINASVSAYTSEV 146 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--ESEEEEESSS-S-TTGGGSHHHHHHHHHHHHHHCEEEEEESS-E
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCEEEEEEecccCCcccccHHHHHHHHHHhcCCcceEEEEEeeE
Confidence 3444443333444421 2334667888887777655 3445789999999999999999998766
No 288
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=21.80 E-value=2e+02 Score=22.55 Aligned_cols=65 Identities=11% Similarity=0.219 Sum_probs=38.8
Q ss_pred EEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCCchhhhh
Q 015543 111 IVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDV 183 (405)
Q Consensus 111 VvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~~lLsD~ 183 (405)
|+|++..... .+...+++.+++.+-.+-||.++... +. ..+....+ . +-..|+.-|-.+.-|...
T Consensus 46 ~iiid~~~~~--~~~~~~~~~i~~~~~~~~ii~~t~~~-~~-~~~~~~~~-~---g~~~~l~kp~~~~~l~~~ 110 (112)
T PF00072_consen 46 LIIIDLELPD--GDGLELLEQIRQINPSIPIIVVTDED-DS-DEVQEALR-A---GADDYLSKPFSPEELRAA 110 (112)
T ss_dssp EEEEESSSSS--SBHHHHHHHHHHHTTTSEEEEEESST-SH-HHHHHHHH-T---TESEEEESSSSHHHHHHH
T ss_pred EEEEEeeecc--ccccccccccccccccccEEEecCCC-CH-HHHHHHHH-C---CCCEEEECCCCHHHHHHh
Confidence 5566655433 55667788888877777888888766 33 33333332 2 345677777655445444
No 289
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=21.74 E-value=5.7e+02 Score=26.21 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=71.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCcccHHHHHHHHHHHh
Q 015543 19 GDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLAL 98 (405)
Q Consensus 19 gD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~~G~~sL~~gL~iA~lAL 98 (405)
++-.|---+++.+.+..|...-.+.+|. ++.+.+.+.+++-.. .+.++..+..+-.. .|
T Consensus 179 ~~~~~~~~~~m~~~i~~Ia~~ar~~~P~----~~II~NnG~eil~~~---~g~~~~~idgV~~E--------------sl 237 (315)
T TIGR01370 179 GDNRPGAAAEMIAFVCEIAAYARAQNPQ----FVIIPQNGEELLRDD---HGGLAATVSGWAVE--------------EL 237 (315)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHCCC----EEEEecCchhhhhcc---ccchhhhceEEEec--------------ce
Confidence 3334444466777888877666778886 344445555665322 23344444443211 11
Q ss_pred cccCCCCCCeEEEEEecCCCC-CChhHHHHHHHHHHhCCceEEEEEeCCCCC---CcHHHHHHHHHHHcCCCCcEEEEec
Q 015543 99 KHRQNKNQRQRIIVFAGSPVK-YDRKVMEMIGKKLKKNSVAIDIVNFGEDDD---GKPEKLEALLAAVNNNDSSHLVHVP 174 (405)
Q Consensus 99 Khr~~k~~~~RIVvFvgSpi~-~d~~~l~~~akkLKknnI~VdII~FG~e~~---~n~~~L~~f~~~vn~~d~Shlv~vp 174 (405)
-. +. ..+.. .+...+.+-++++++.|+.|-+|-+....+ +|....+.+.+.....+.-.||.-+
T Consensus 238 f~--~~----------~~~~~e~dr~~~l~~L~~~~~~G~~Vl~IDY~~~~~~~~~n~~~~~~~~~~~~~~Gf~pYVsd~ 305 (315)
T TIGR01370 238 FY--YA----------ANRPTEAERQRRLLALYRLWQQGKFVLTVDYVDDGTKTNENPARMKDAAEKARAAGLIPYVAES 305 (315)
T ss_pred EE--cC----------CCCCCHHHHHHHHHHHHHHHHCCCcEEEEEecCCcccchhhHHHHHHHHHHHHHcCCeeeecCc
Confidence 11 00 01222 244566677888999999999999998641 2566778888888766666665543
No 290
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=21.70 E-value=3e+02 Score=28.37 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=44.2
Q ss_pred ccccCCcccHHHHHHHHHHHhcccC------CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 78 ELDIGGEMNIAAGIQVAQLALKHRQ------NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 78 ~l~~~G~~sL~~gL~iA~lALKhr~------~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
+++..+...|..+--.|..+|.+.. +-..+++|+|+-||. +=-.-++..+|..+ .+.|+..+...
T Consensus 123 ~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsg-----gVG~~aiQlAk~~~-~~~v~t~~s~e 193 (347)
T KOG1198|consen 123 SLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSG-----GVGTAAIQLAKHAG-AIKVVTACSKE 193 (347)
T ss_pred ccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCc-----HHHHHHHHHHHhcC-CcEEEEEcccc
Confidence 4566788899999999999999976 444555666665553 22334556667777 56666666544
No 291
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=21.60 E-value=2.6e+02 Score=26.73 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=65.7
Q ss_pred CCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCcccHHHHHHHHHHHhcc
Q 015543 21 YSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKH 100 (405)
Q Consensus 21 ~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~~G~~sL~~gL~iA~lALKh 100 (405)
..|.|+.....-+..|.- .+ |..+.|..++.|..+. .-+.+-++|+-.+..=|+.+...||+
T Consensus 66 ~~~~a~~~~~~N~~~fg~--------~n--~~vv~g~Ap~~L~~~~--------~~daiFIGGg~~i~~ile~~~~~l~~ 127 (187)
T COG2242 66 RDEEALELIERNAARFGV--------DN--LEVVEGDAPEALPDLP--------SPDAIFIGGGGNIEEILEAAWERLKP 127 (187)
T ss_pred cCHHHHHHHHHHHHHhCC--------Cc--EEEEeccchHhhcCCC--------CCCEEEECCCCCHHHHHHHHHHHcCc
Confidence 346677766666666552 23 3445667777666432 23456788999999999999999985
Q ss_pred cCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 101 RQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 101 r~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
.-|||+= ....+.+.++.+.+++.+++ +||-+.-
T Consensus 128 ------ggrlV~n-----aitlE~~~~a~~~~~~~g~~-ei~~v~i 161 (187)
T COG2242 128 ------GGRLVAN-----AITLETLAKALEALEQLGGR-EIVQVQI 161 (187)
T ss_pred ------CCeEEEE-----eecHHHHHHHHHHHHHcCCc-eEEEEEe
Confidence 3456643 23677889999999999997 7776643
No 292
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=21.45 E-value=8.3e+02 Score=24.46 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=70.2
Q ss_pred EEEEeCChhhcCCC-CCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCC-CC-HHHHHHhhcc--c--
Q 015543 7 MICIDNSEWMRNGD-YSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT-TD-LGKILACMHE--L-- 79 (405)
Q Consensus 7 ~IvIDnSesMrngD-~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT-~D-~~kils~L~~--l-- 79 (405)
+++||-+..-..-+ +.++-+.+...|++.|+.. -.-.+|+++-.. ...+ .+ ..-.+.+|.. +
T Consensus 140 ~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~-----G~~~i~~i~~~~------~~~~~~~R~~Gf~~al~~~~~~~ 208 (333)
T COG1609 140 VVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIEL-----GHRRIAFIGGPL------DSSASRERLEGYRAALREAGLPI 208 (333)
T ss_pred EEEEeCCCccCCCCEEEEChHHHHHHHHHHHHHC-----CCceEEEEeCCC------ccccHhHHHHHHHHHHHHCCCCC
Confidence 56677655511111 2367888999999999985 244677776432 1111 11 1223344422 2
Q ss_pred ----ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCce----EEEEEeCC
Q 015543 80 ----DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVA----IDIVNFGE 146 (405)
Q Consensus 80 ----~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~----VdII~FG~ 146 (405)
-..|..+...|...+...|..... ...-|++. + ..-..-+.+.+++.+++ |.||||+.
T Consensus 209 ~~~~i~~~~~~~~~g~~~~~~ll~~~~~--~ptAif~~--n-----D~~Alg~l~~~~~~g~~vP~disviGfDd 274 (333)
T COG1609 209 NPEWIVEGDFSEESGYEAAERLLARGEP--RPTAIFCA--N-----DLMALGALRALRELGLRVPEDLSVIGFDD 274 (333)
T ss_pred CcceEEecCCChHHHHHHHHHHHhcCCC--CCcEEEEc--C-----cHHHHHHHHHHHHcCCCCCCeeEEEEecC
Confidence 235667889999999988876321 13333322 2 22334556677788887 89999987
No 293
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=21.43 E-value=3.5e+02 Score=27.46 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 122 RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 122 ~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
-....+.++.|++++|.|.||.+-.-..-..+.+.++++++ .++|+|-.+
T Consensus 213 ~~~a~eAa~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~-----~~vv~vEe~ 262 (327)
T PRK09212 213 VKLALEAAELLEKEGISVEVIDLRTLRPLDTETIIESVKKT-----NRLVVVEEG 262 (327)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhC-----CeEEEEcCC
Confidence 44567788888888999999988775433444555555544 356666554
No 294
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=21.36 E-value=5.4e+02 Score=24.53 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=40.2
Q ss_pred CCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeC----CCCCCcHHHHHHHHHHHcCCC---CcEEEEecCC
Q 015543 106 QRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFG----EDDDGKPEKLEALLAAVNNND---SSHLVHVPTG 176 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG----~e~~~n~~~L~~f~~~vn~~d---~Shlv~vp~g 176 (405)
+.+-+++|+||- |---.+..+.|.|+.|+.|.|= ... ...++.+.+++.++... ...+++|+-.
T Consensus 3 ~gk~l~LlSGGi------DSpVAa~lm~krG~~V~~l~f~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~~~l~~v~~~ 73 (197)
T PF02568_consen 3 QGKALALLSGGI------DSPVAAWLMMKRGCEVIALHFDSPPFTGE-KAREKVEELAEKLSEYSPGHKIRLYVVDFT 73 (197)
T ss_dssp T-EEEEE-SSCC------HHHHHHHHHHCBT-EEEEEEEE-TTTSSC-CCHHHHHHHHHHHHCCSTTS-EEEEEECHH
T ss_pred CceEEEEecCCc------cHHHHHHHHHHCCCEEEEEEEECCCCCCH-HHHHHHHHHHHHHHHhCCCcceeEEEECcH
Confidence 455666776665 2235677888999999999993 223 35678888888876533 4566666544
No 295
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=21.19 E-value=3.5e+02 Score=27.48 Aligned_cols=38 Identities=8% Similarity=0.214 Sum_probs=28.0
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
+++|.+-..+.+...+.++++.++..++.+ ||++|...
T Consensus 54 ~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~-IiaiGGGs 91 (370)
T cd08551 54 VVIFDGVEPNPTLSNVDAAVAAYREEGCDG-VIAVGGGS 91 (370)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHhcCCCE-EEEeCCch
Confidence 455655444557788888898998888876 88888755
No 296
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=21.12 E-value=1.9e+02 Score=28.67 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=33.5
Q ss_pred eEEEEEecCCCCC---ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCC
Q 015543 108 QRIIVFAGSPVKY---DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND 166 (405)
Q Consensus 108 ~RIVvFvgSpi~~---d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d 166 (405)
...|+|+|.-... +-..+++.+.+++. ++.+.+||-|... +.|+.+++..+-.+
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~-~~~l~ivG~g~~~----~~l~~~~~~~~l~~ 236 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTG-EWQLHIIGDGSDF----EKCKAYSRELGIEQ 236 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCC-CeEEEEEeCCccH----HHHHHHHHHcCCCC
Confidence 4567788864322 23345555555543 6888888877543 57888888765433
No 297
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=21.08 E-value=2.2e+02 Score=23.78 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=48.3
Q ss_pred eEEECCCCCHHHHHHhhcccccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHH-HHHH---HhC
Q 015543 60 RVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMI-GKKL---KKN 135 (405)
Q Consensus 60 ~vLvtlT~D~~kils~L~~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~-akkL---Kkn 135 (405)
-.|..|..++..++.+|...- .. ...+..|.+++.++. ......+|.+.-.. .+...++.. ++.+ -..
T Consensus 8 v~l~~P~~~p~~l~~aL~~~~-~~----~~~V~~Ayl~~~~~~--~~~~~~li~vd~~~-~~~~~~~~~i~~~~~~~~~~ 79 (108)
T PF14581_consen 8 VLLGEPEEEPTDLLAALSEYF-KQ----HKNVRAAYLALMQDE--DEQPSLLIGVDFDG-EDIEEIFQEIGRAARPYLPD 79 (108)
T ss_pred EEecCCccCHHHHHHHHHHHH-hh----CccHHHhHHHHhhcc--CCCceEEEEEeccC-hhHHHHHHHHHHHhhhcCCC
Confidence 445678999999999998762 11 124678888888862 33444444444333 344444433 3333 345
Q ss_pred CceEEEEEeCC
Q 015543 136 SVAIDIVNFGE 146 (405)
Q Consensus 136 nI~VdII~FG~ 146 (405)
+..|++|.+-.
T Consensus 80 ~~~vd~~~~~~ 90 (108)
T PF14581_consen 80 GWPVDFVLLDD 90 (108)
T ss_pred CceEEEEEccC
Confidence 68999999976
No 298
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=21.04 E-value=4e+02 Score=23.20 Aligned_cols=53 Identities=13% Similarity=0.295 Sum_probs=32.3
Q ss_pred EEEEEecCCCC---CChhHHHHHHHHHHhCCceEEEEE---eCCCCCCcHHHHHHHHHH
Q 015543 109 RIIVFAGSPVK---YDRKVMEMIGKKLKKNSVAIDIVN---FGEDDDGKPEKLEALLAA 161 (405)
Q Consensus 109 RIVvFvgSpi~---~d~~~l~~~akkLKknnI~VdII~---FG~e~~~n~~~L~~f~~~ 161 (405)
.+|.|..+-.. ..-..+.++.++++..++.|-.|+ ||....+..+.+++|+++
T Consensus 25 vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~ 83 (153)
T TIGR02540 25 SLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARR 83 (153)
T ss_pred EEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHH
Confidence 34555433332 233367788888888887765555 444322456778899874
No 299
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=21.02 E-value=3.7e+02 Score=23.72 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=32.4
Q ss_pred cCCCCCChhHHHHHHHHHHhC-CceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEec
Q 015543 115 GSPVKYDRKVMEMIGKKLKKN-SVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVP 174 (405)
Q Consensus 115 gSpi~~d~~~l~~~akkLKkn-nI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp 174 (405)
||........+..++.++++. ++.|. .+|=+-.. .-+...++++-..+-.+++++|
T Consensus 9 GSR~~~~~~~~~~la~~l~~~~~~~v~-~afle~~~---P~l~~~l~~l~~~G~~~ivVvP 65 (125)
T cd03415 9 GSRRNTFNEDMEEWAAYLERKLGVPVY-LTYNEYAE---PNWRDLLNELLSEGYGHIIIAL 65 (125)
T ss_pred CCCChHHHHHHHHHHHHHHhccCCceE-EEEeecCC---CCHHHHHHHHHHCCCCEEEEeh
Confidence 666666677888999999753 33332 34432221 2345555554444556788886
No 300
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.99 E-value=8.8e+02 Score=24.57 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=52.2
Q ss_pred HHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcE-
Q 015543 91 IQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSH- 169 (405)
Q Consensus 91 L~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Sh- 169 (405)
|.--...|+.+ . ..++-.||.+|.. ..+..=.....|.+++-||.+.++-|.+.. ...+++ ..++.+|.+..-|
T Consensus 19 l~~~v~~l~~~-g-~~P~LaiI~vg~d-~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-t~~el~-~~I~~lN~D~~V~G 93 (284)
T PRK14193 19 LAERVAALKEK-G-ITPGLGTVLVGDD-PGSQAYVRGKHRDCAEVGITSIRRDLPADA-TQEELN-AVIDELNADPACTG 93 (284)
T ss_pred HHHHHHHHHhC-C-CCceEEEEEeCCC-HHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCE
Confidence 33333445543 1 2233334444433 333334456688999999999999999877 455554 5568898877655
Q ss_pred -EEEecCCCchhhhhhh
Q 015543 170 -LVHVPTGPNALSDVLI 185 (405)
Q Consensus 170 -lv~vp~g~~lLsD~l~ 185 (405)
+|-.|--+++-.+.++
T Consensus 94 IlvqlPlP~~id~~~i~ 110 (284)
T PRK14193 94 YIVQLPLPKHLDENAVL 110 (284)
T ss_pred EEEeCCCCCCCCHHHHH
Confidence 4444533454444443
No 301
>PRK01355 azoreductase; Reviewed
Probab=20.78 E-value=4.9e+02 Score=24.10 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=26.2
Q ss_pred eEEEEEecCCCC---C-ChhHHHHHHHHHHhC--CceEEEEEeCCCC
Q 015543 108 QRIIVFAGSPVK---Y-DRKVMEMIGKKLKKN--SVAIDIVNFGEDD 148 (405)
Q Consensus 108 ~RIVvFvgSpi~---~-d~~~l~~~akkLKkn--nI~VdII~FG~e~ 148 (405)
++|+++.|||.. . +..-....++.+++. +..|.++.+....
T Consensus 2 ~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~ 48 (199)
T PRK01355 2 SKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETK 48 (199)
T ss_pred CeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 478888899962 2 223334556667763 4778888887654
No 302
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=20.72 E-value=2.2e+02 Score=27.04 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=34.5
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~ 160 (405)
-|.|+|+.-...++-+..+++.+|+.++++.+..=|... ...+.++.+..
T Consensus 73 ~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~-~~~~~~~~ll~ 122 (246)
T PRK11145 73 GVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVR-RYDPVIDELLD 122 (246)
T ss_pred eEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCC-cchHHHHHHHH
Confidence 477888876666666779999999999987666555432 12356666654
No 303
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=20.68 E-value=1.2e+02 Score=27.38 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=35.0
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~v 162 (405)
-|.|+|+. .-...+..+++.+|+.++++.+.. |- ...++.+.++..+
T Consensus 64 gVt~SGGE--l~~~~l~~ll~~lk~~Gl~i~l~T-g~---~~~~~~~~il~~i 110 (147)
T TIGR02826 64 CVLFLGGE--WNREALLSLLKIFKEKGLKTCLYT-GL---EPKDIPLELVQHL 110 (147)
T ss_pred EEEEechh--cCHHHHHHHHHHHHHCCCCEEEEC-CC---CCHHHHHHHHHhC
Confidence 59999999 567789999999999999887765 31 2234566666544
No 304
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=20.59 E-value=2.9e+02 Score=28.50 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 123 KVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 123 ~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
....+.++.|++.+|.|.+|.+-.-..-..+.+...++++ .++|+|-.+
T Consensus 246 ~~aleAa~~L~~~Gi~v~vI~~~~l~Pld~e~i~~~~~~~-----~~IvvvEE~ 294 (355)
T PTZ00182 246 HVALKAAEELAKEGISCEVIDLRSLRPWDRETIVKSVKKT-----GRCVIVHEA 294 (355)
T ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCCCCHHHHHHHHhcC-----CEEEEEEeC
Confidence 4566777888888888888887764322233334444322 246665443
No 305
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=20.58 E-value=2.3e+02 Score=29.21 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecC
Q 015543 123 KVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPT 175 (405)
Q Consensus 123 ~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~ 175 (405)
...++.|+.|+++||++-||.+.+--.--...+.+..+++ -++|++-.
T Consensus 205 ~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A~~t-----~~IvT~Ee 252 (312)
T COG3958 205 AEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAARET-----GRIVTAEE 252 (312)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHHhhc-----CcEEEEec
Confidence 4567899999999999999999985532344556666655 26777754
No 306
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.58 E-value=8.7e+02 Score=24.70 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=46.2
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEE--EEecCCCchhhhhhh
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHL--VHVPTGPNALSDVLI 185 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shl--v~vp~g~~lLsD~l~ 185 (405)
.++++.-+....+..=.....|.+++-||.+.++-|.+.. ...+++ ..++.+|.++.-|= |-.|--.|+-...++
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~el~-~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~ 109 (295)
T PRK14174 33 GLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADT-TEEHLL-KKIEDLNNDPDVHGILVQQPLPKQIDEFAVT 109 (295)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 4444433333333444556788999999999999999887 454455 55688988765453 334433354334343
No 307
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.55 E-value=2.1e+02 Score=21.64 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=28.8
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
+|-.||..+...++-+.++.+.|.+.+| .+|++|+..
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i--~~i~~~~s~ 38 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPV--HLVSQAAND 38 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCc--eEEEEeCCC
Confidence 5778898887778888888888877665 458888765
No 308
>TIGR02793 nikR nickel-responsive transcriptional regulator NikR. Three members of the seed for this model, from Escherichia coli, Pseudomonas putida, and Brucella melitensis, are found associated with a nickel ABC transporter operon that acts to import nickel for use as a cofactor in urease or hydrogenase. These proteins, with characterized nickel-binding and DNA-binding domains, act as nickel-responsive transcriptional regulators. In the larger family of full-length homologs, most others both lack proximity to the nickel ABC transporter operon and form a separate clade. Several of the homologs not within the scope of this model, but rather scoring between the trusted and noise cutoffs, have been shown to bind nickel, copper, or both, and to regulate genes in response to nickel.
Probab=20.55 E-value=1.7e+02 Score=26.19 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=28.0
Q ss_pred hhcCCCCCCcHHHHHHHHHHHHHHhhccCC-cCCcEEEEEe
Q 015543 15 WMRNGDYSPSRLRAQADAVSLICGAKTQSN-PENTVGILTM 54 (405)
Q Consensus 15 sMrngD~~PtRl~Aq~dAv~~fv~~k~~~N-Pes~VGlvtm 54 (405)
.+....| +||=++-.++++.++.++.... +..-+|+|++
T Consensus 18 ~~~~~g~-~~RSe~ir~~ir~~l~e~~~~~~~~~~~G~i~~ 57 (129)
T TIGR02793 18 LIARRGY-QNRSEAIRDLLRSGLQQEAAEQHGTACVAVLSY 57 (129)
T ss_pred HHHHcCC-CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEEE
Confidence 3444455 8999999999999888654333 3445898887
No 309
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.43 E-value=8.3e+02 Score=24.74 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=52.5
Q ss_pred HHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEE
Q 015543 91 IQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHL 170 (405)
Q Consensus 91 L~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shl 170 (405)
|+.....|+.+.. ..++-.||.+|.. ..+..=.....|.+++-||.+.++-|-+.. ...+++ ..++++|.++.-|=
T Consensus 19 lk~~v~~l~~~~~-~~P~Laii~vg~d-~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-s~~el~-~~I~~lN~d~~V~G 94 (285)
T PRK10792 19 VAQKVQARVAAGL-RAPGLAVVLVGSD-PASQVYVASKRKACEEVGFVSRSYDLPETT-SEAELL-ALIDELNADPTIDG 94 (285)
T ss_pred HHHHHHHHHHcCC-CCceEEEEEeCCC-HHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCE
Confidence 3333444554321 2233334444433 223334456688999999999999998876 444455 55588998766554
Q ss_pred EEe--cCCCchhhhhhhc
Q 015543 171 VHV--PTGPNALSDVLIS 186 (405)
Q Consensus 171 v~v--p~g~~lLsD~l~s 186 (405)
+.| |--+++-.+.++.
T Consensus 95 IlvqlPLP~~~~~~~i~~ 112 (285)
T PRK10792 95 ILVQLPLPAHIDNVKVLE 112 (285)
T ss_pred EEEeCCCCCCCCHHHHHh
Confidence 444 4333544444443
No 310
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.41 E-value=8.7e+02 Score=24.57 Aligned_cols=91 Identities=15% Similarity=0.242 Sum_probs=52.2
Q ss_pred HHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEE
Q 015543 91 IQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHL 170 (405)
Q Consensus 91 L~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shl 170 (405)
|.-....|+++.+ ..++-.+|.+| ....+..=.....|.+++-||.+..+-|.+.. ...+++ ..++++|.++.-|=
T Consensus 17 lk~~v~~~~~~~g-~~P~La~I~vg-~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~el~-~~I~~lN~D~~V~G 92 (282)
T PRK14180 17 LATQVQEYKHHTA-ITPKLVAIIVG-NDPASKTYVASKEKACAQVGIDSQVITLPEHT-TESELL-ELIDQLNNDSSVHA 92 (282)
T ss_pred HHHHHHHHHhccC-CCCeEEEEEeC-CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCe
Confidence 3333445555322 23333344444 32333334456788999999999999999877 444455 55688997765554
Q ss_pred EE--ecCCCchhhhhhh
Q 015543 171 VH--VPTGPNALSDVLI 185 (405)
Q Consensus 171 v~--vp~g~~lLsD~l~ 185 (405)
+. .|--.++-...++
T Consensus 93 Iivq~PlP~~i~~~~i~ 109 (282)
T PRK14180 93 ILVQLPLPAHINKNNVI 109 (282)
T ss_pred EEEcCCCCCCCCHHHHH
Confidence 43 3433354333343
No 311
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=20.34 E-value=3.1e+02 Score=28.08 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=25.3
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
+.+|.+..-+.+...+.+.++.++++++. -||++|...
T Consensus 55 ~~~~~~v~~~p~~~~v~~~~~~~~~~~~D-~IIavGGGS 92 (375)
T cd08179 55 VEVFEGVEPDPSVETVLKGAEAMREFEPD-WIIALGGGS 92 (375)
T ss_pred EEEeCCCCCCcCHHHHHHHHHHHHhcCCC-EEEEeCCcc
Confidence 45565544445666777888888887774 477787755
No 312
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=20.24 E-value=2.5e+02 Score=22.66 Aligned_cols=28 Identities=11% Similarity=0.011 Sum_probs=22.4
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 121 d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
.-.-|..+.+++++.++.+.+++.-...
T Consensus 60 gl~~L~~~~~~~~~~~~~~~l~~~~~~~ 87 (108)
T TIGR00377 60 GLGVLLGRYKQVRRVGGQLVLVSVSPRV 87 (108)
T ss_pred cHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 4567888899999999999998875433
No 313
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=20.21 E-value=3e+02 Score=28.52 Aligned_cols=25 Identities=8% Similarity=0.049 Sum_probs=12.7
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 121 DRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 121 d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
+-..+.++++.+++.++. -||++|.
T Consensus 63 ~~~~v~~~~~~~~~~~~D-~IIaiGG 87 (398)
T cd08178 63 SLETVRKGLELMNSFKPD-TIIALGG 87 (398)
T ss_pred CHHHHHHHHHHHHhcCCC-EEEEeCC
Confidence 344555555555555552 3445554
No 314
>PLN02681 proline dehydrogenase
Probab=20.18 E-value=2.4e+02 Score=30.37 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=28.9
Q ss_pred EecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHH
Q 015543 113 FAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPE 153 (405)
Q Consensus 113 FvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~ 153 (405)
|++|. +..+...++++|++.||.+ |+.|..|...+.+
T Consensus 88 F~aGE---t~~e~~~~i~~L~~~G~~~-iLdy~~E~~~~e~ 124 (455)
T PLN02681 88 FCAGE---DAEEAARTVRRLWELGLGG-ILDYAAEDAGDNA 124 (455)
T ss_pred eecCC---CHHHHHHHHHHHHHCCCeE-EeeccccCcCCHH
Confidence 56665 6889999999999999999 7777776644433
No 315
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=20.11 E-value=3.7e+02 Score=27.51 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=23.2
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
+.+|.+-.-+.+-..+.++++.++..++.+ ||++|...
T Consensus 54 ~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~-IIaiGGGS 91 (375)
T cd08194 54 SAIFDDVVSEPTDESVEEGVKLAKEGGCDV-IIALGGGS 91 (375)
T ss_pred EEEECCCCCCcCHHHHHHHHHHHHhcCCCE-EEEeCCch
Confidence 444543333445666777777777777764 67777644
No 316
>PF13941 MutL: MutL protein
Probab=20.10 E-value=2.3e+02 Score=30.65 Aligned_cols=52 Identities=23% Similarity=0.311 Sum_probs=39.6
Q ss_pred CCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015543 106 QRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f 158 (405)
.+--||++.|+--..+...+...|+.|.+.++.+-||-=|... ...++-+.|
T Consensus 123 ~~PDiILLaGGtDgG~~~~il~nA~~La~~~~~~pVIyAGN~~-a~~~v~~il 174 (457)
T PF13941_consen 123 IRPDIILLAGGTDGGNKEVILHNAEMLAEANLRIPVIYAGNKA-AQDEVEEIL 174 (457)
T ss_pred cCCCEEEEeCCccCCchHHHHHHHHHHHhCCCCCcEEEECCHH-HHHHHHHHH
Confidence 4445888888887678899999999999999999999888765 333333333
No 317
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=20.09 E-value=3.3e+02 Score=28.20 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=56.5
Q ss_pred EECCCCCHHHHHHhhcccc-c--CCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCC-CChhHHHHHHHHHHhCCc
Q 015543 62 LTTPTTDLGKILACMHELD-I--GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK-YDRKVMEMIGKKLKKNSV 137 (405)
Q Consensus 62 LvtlT~D~~kils~L~~l~-~--~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~-~d~~~l~~~akkLKknnI 137 (405)
-|+-..|+..++-++-... | +-.|.|...|.+.+..=| |=+++..+.. -|..-|.++. ++|++
T Consensus 83 kv~~gvDPKSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK----------~dly~d~rdemWD~~kl~~vv--~~K~~- 149 (343)
T KOG1763|consen 83 KVPKGVDPKSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEK----------IDLYPDTRDEMWDEEKLEEVV--LKKHG- 149 (343)
T ss_pred ccccCCCchHHHHHHHhccCCCCCCcccccchHHHhhhccc----------hhccccchhhhhhHHHHHHHH--Hhhcc-
Confidence 3556678888888877642 2 335899888877643332 2233333322 2666677776 45655
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 138 AIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 138 ~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
-+- . .+.-+|+.|+++|+++...-|.++|.|
T Consensus 150 -----k~k--~-~tdiVCKfFLeAvE~~kYGWfW~CPnG 180 (343)
T KOG1763|consen 150 -----KPK--P-TTDIVCKFFLEAVENGKYGWFWECPNG 180 (343)
T ss_pred -----CCC--C-chhHHHHHHHHHHhcCCccceeECCCC
Confidence 111 1 345699999999987544444444444
No 318
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=20.09 E-value=1.5e+02 Score=26.74 Aligned_cols=38 Identities=8% Similarity=0.228 Sum_probs=24.8
Q ss_pred EEEEEecCCCCC-ChhHHH-HHHHHHH-hCCceEEEEEeCC
Q 015543 109 RIIVFAGSPVKY-DRKVME-MIGKKLK-KNSVAIDIVNFGE 146 (405)
Q Consensus 109 RIVvFvgSpi~~-d~~~l~-~~akkLK-knnI~VdII~FG~ 146 (405)
+|++|+||+... ....+. ..++.+. +.++.|.+|.+.+
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~~idL~~ 41 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPRTIDLAD 41 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEhhh
Confidence 588999999753 333344 4444554 5688888887754
No 319
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=20.01 E-value=1.5e+02 Score=29.15 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=21.5
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
+||++++++- .........+++.|++.+..|.+|+++.
T Consensus 2 ~~i~i~~~g~-gG~~~~~~~la~~L~~~g~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGT-GGHVFPALALAEELKKRGWEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcc-hHhhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 3555554433 2223344567777777777777776644
Done!