Query 015543
Match_columns 405
No_of_seqs 221 out of 455
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 14:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015543.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015543hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_W RPN10, 26S proteasome r 100.0 2.2E-78 7.5E-83 587.1 22.0 252 1-253 1-254 (268)
2 2x5n_A SPRPN10, 26S proteasome 100.0 1.6E-45 5.4E-50 339.1 22.2 189 2-192 1-189 (192)
3 1yx4_A 26S proteasome non-ATPa 99.9 1.3E-26 4.5E-31 201.4 9.9 103 208-341 23-125 (132)
4 1jey_B KU80; double-strand DNA 99.8 1.6E-20 5.5E-25 197.1 16.6 161 4-164 8-217 (565)
5 3ibs_A Conserved hypothetical 99.8 1.7E-18 5.7E-23 156.5 20.5 159 5-176 13-198 (218)
6 1ijb_A VON willebrand factor; 99.6 1.9E-14 6.5E-19 130.4 18.5 160 5-175 15-180 (202)
7 1atz_A VON willebrand factor; 99.6 1.6E-14 5.3E-19 128.7 17.5 157 5-175 7-169 (189)
8 1shu_X Anthrax toxin receptor 99.6 3.2E-15 1.1E-19 131.0 12.8 145 5-161 8-156 (182)
9 1q0p_A Complement factor B; VO 99.6 1.8E-14 6E-19 130.0 17.4 162 5-176 17-205 (223)
10 2xgg_A Microneme protein 2; A/ 99.6 2.3E-14 7.7E-19 127.2 16.3 137 5-148 19-163 (178)
11 1jey_A KU70; double-strand DNA 99.6 1.4E-14 4.6E-19 153.7 16.7 145 4-148 36-209 (609)
12 4hqo_A Sporozoite surface prot 99.6 4.1E-14 1.4E-18 134.1 16.7 147 5-160 20-176 (266)
13 3n2n_F Anthrax toxin receptor 99.6 1.2E-14 4.2E-19 127.7 11.1 154 5-175 9-168 (185)
14 4fx5_A VON willebrand factor t 99.6 1.5E-13 5.2E-18 141.5 20.7 147 5-163 79-234 (464)
15 1v7p_C Integrin alpha-2; snake 99.5 3.2E-13 1.1E-17 121.4 19.4 133 5-146 8-147 (200)
16 2b2x_A Integrin alpha-1; compu 99.5 2.8E-13 9.6E-18 124.0 19.3 162 5-176 24-197 (223)
17 1n3y_A Integrin alpha-X; alpha 99.5 3.5E-14 1.2E-18 126.3 11.2 161 5-176 11-179 (198)
18 1mf7_A Integrin alpha M; cell 99.5 4.5E-14 1.5E-18 126.0 11.8 160 5-176 7-175 (194)
19 4hqf_A Thrombospondin-related 99.5 1.5E-13 5E-18 130.7 15.8 163 5-176 23-195 (281)
20 2x31_A Magnesium-chelatase 60 99.5 1.8E-15 6E-20 134.3 0.9 149 4-162 6-164 (189)
21 1pt6_A Integrin alpha-1; cell 99.5 5.7E-13 1.9E-17 120.9 16.5 163 5-176 9-182 (213)
22 1rrk_A Complement factor B; BB 99.5 6.3E-13 2.1E-17 134.5 15.8 161 5-176 3-191 (497)
23 2odp_A Complement C2; C3/C5 co 99.4 1.2E-12 4.3E-17 133.1 14.3 163 5-176 11-199 (509)
24 3hrz_D Complement factor B; se 99.3 9.6E-12 3.3E-16 131.8 14.5 162 5-176 245-433 (741)
25 3zqk_A VON willebrand factor; 99.3 3.9E-11 1.3E-15 108.3 14.7 140 5-160 23-169 (199)
26 1mjn_A Integrin alpha-L; rossm 99.2 1.3E-10 4.5E-15 103.2 11.1 129 5-148 4-138 (179)
27 3k6s_A Integrin alpha-X; cell 99.1 9.6E-11 3.3E-15 131.9 9.3 160 5-175 132-299 (1095)
28 1yvr_A RO autoantigen, 60-kDa 98.8 1.6E-08 5.4E-13 105.5 10.0 129 5-148 370-505 (538)
29 2ww8_A RRGA, cell WALL surface 98.6 9.8E-08 3.4E-12 105.7 10.5 113 5-118 226-390 (893)
30 2nvo_A RO sixty-related protei 98.4 1.8E-06 6.3E-11 90.2 13.9 129 5-148 364-501 (535)
31 2nut_A Protein transport prote 98.4 1.3E-06 4.5E-11 95.2 13.2 147 5-164 134-373 (769)
32 3rag_A Uncharacterized protein 98.4 6.7E-07 2.3E-11 85.6 8.8 88 5-99 136-226 (242)
33 1pcx_A Protein transport prote 98.1 2.1E-05 7.2E-10 86.3 14.4 148 5-163 189-404 (810)
34 2iue_A Pactolus I-domain; memb 98.1 7.2E-05 2.5E-09 70.1 15.3 166 5-184 5-205 (212)
35 1m2o_A SEC23, protein transpor 98.0 3.2E-05 1.1E-09 84.3 13.1 147 5-164 123-367 (768)
36 1m2v_B SEC24, protein transpor 98.0 4.1E-05 1.4E-09 85.2 13.6 148 5-163 305-520 (926)
37 2klz_A Ataxin-3; UIM, ubiquiti 97.7 9.5E-06 3.3E-10 59.5 1.2 40 291-342 4-43 (52)
38 3eh2_A Protein transport prote 97.6 0.00079 2.7E-08 73.5 15.3 151 5-164 175-390 (766)
39 3eh1_A Protein transport prote 97.5 0.0013 4.5E-08 71.6 16.1 148 5-164 162-369 (751)
40 3efo_B SEC24 related gene fami 97.5 0.00071 2.4E-08 73.9 13.4 151 5-164 179-394 (770)
41 3fcs_B Integrin beta-3; beta p 97.2 0.0035 1.2E-07 67.8 14.5 159 5-176 113-336 (690)
42 1p9c_A 26S proteasome non-ATPa 96.8 0.00038 1.3E-08 50.4 1.7 21 321-341 17-37 (45)
43 3k6s_B Integrin beta-2; cell r 96.8 0.0022 7.6E-08 69.3 8.3 157 5-175 106-325 (687)
44 3rag_A Uncharacterized protein 96.8 0.0035 1.2E-07 59.9 8.3 73 105-184 8-83 (242)
45 3vi3_B Integrin beta-1; beta p 96.5 0.072 2.5E-06 55.1 16.6 158 5-176 124-343 (454)
46 3t3p_B Integrin beta-3; integr 96.3 0.085 2.9E-06 54.8 15.4 159 5-176 113-336 (472)
47 3v4v_B Integrin beta-7; cell a 96.0 0.13 4.6E-06 53.7 15.6 158 5-176 134-355 (503)
48 1q0v_A Hydrophilic protein; ha 95.4 0.0089 3E-07 48.3 3.0 52 290-341 8-70 (81)
49 2klz_A Ataxin-3; UIM, ubiquiti 94.2 0.027 9.2E-07 41.4 2.6 21 289-309 22-42 (52)
50 1q0v_A Hydrophilic protein; ha 93.2 0.032 1.1E-06 45.1 1.8 21 218-238 6-26 (81)
51 1yx4_A 26S proteasome non-ATPa 92.4 0.058 2E-06 47.1 2.4 93 209-308 28-124 (132)
52 3a1q_C Ubiquitin interaction m 91.4 0.2 7E-06 35.5 3.8 14 292-305 30-43 (45)
53 2rr9_C Putative uncharacterize 91.4 0.22 7.5E-06 35.5 4.0 16 292-307 27-42 (46)
54 3qhp_A Type 1 capsular polysac 85.2 4.5 0.00016 33.3 9.0 25 218-242 121-145 (166)
55 3a1q_C Ubiquitin interaction m 80.7 0.48 1.6E-05 33.6 0.9 19 322-340 3-21 (45)
56 2rr9_C Putative uncharacterize 79.6 0.48 1.7E-05 33.7 0.6 18 323-340 1-18 (46)
57 1p9c_A 26S proteasome non-ATPa 77.3 1.5 5.3E-05 31.5 2.7 18 291-308 19-36 (45)
58 2jjm_A Glycosyl transferase, g 64.6 26 0.0009 32.9 9.0 53 107-163 210-264 (394)
59 2f9f_A First mannosyl transfer 61.6 11 0.00038 31.8 5.3 49 106-160 21-70 (177)
60 3c48_A Predicted glycosyltrans 58.1 65 0.0022 30.5 10.6 57 107-167 242-307 (438)
61 3u7r_A NADPH-dependent FMN red 56.0 21 0.00073 31.9 6.3 67 107-175 2-76 (190)
62 2x6q_A Trehalose-synthase TRET 54.4 37 0.0013 32.2 8.1 66 106-171 229-298 (416)
63 3okp_A GDP-mannose-dependent a 51.8 46 0.0016 30.7 8.2 49 107-159 197-248 (394)
64 2d3g_P Ubiquitin interacting m 51.8 9.4 0.00032 24.4 2.2 17 225-241 5-21 (26)
65 3fni_A Putative diflavin flavo 51.7 23 0.0008 30.3 5.7 42 106-147 3-44 (159)
66 2a5l_A Trp repressor binding p 50.3 15 0.00052 31.6 4.3 40 108-147 6-45 (200)
67 3d3k_A Enhancer of mRNA-decapp 49.8 42 0.0014 31.6 7.6 40 107-148 85-124 (259)
68 2db7_A Hairy/enhancer-OF-split 48.6 13 0.00043 28.4 3.0 27 360-386 31-57 (64)
69 1ydg_A Trp repressor binding p 48.2 19 0.00065 31.6 4.6 40 108-147 7-46 (211)
70 3k1y_A Oxidoreductase; structu 48.0 24 0.00084 31.5 5.4 44 104-147 8-59 (191)
71 3f6r_A Flavodoxin; FMN binding 47.8 17 0.0006 29.9 4.1 41 108-148 2-42 (148)
72 1f4p_A Flavodoxin; electron tr 47.7 15 0.00051 30.2 3.7 40 108-147 1-40 (147)
73 2iw1_A Lipopolysaccharide core 47.7 26 0.00088 32.3 5.7 77 106-190 194-274 (374)
74 3hly_A Flavodoxin-like domain; 47.6 19 0.00066 30.7 4.5 41 108-148 1-41 (161)
75 1jzt_A Hypothetical 27.5 kDa p 46.5 29 0.001 32.4 5.9 56 90-147 36-96 (246)
76 3d3j_A Enhancer of mRNA-decapp 46.1 25 0.00087 34.0 5.5 40 107-148 132-171 (306)
77 3b6i_A Flavoprotein WRBA; flav 43.4 24 0.00083 30.2 4.5 41 108-148 2-43 (198)
78 3kuu_A Phosphoribosylaminoimid 42.7 86 0.0029 28.4 8.0 61 109-173 14-74 (174)
79 3oow_A Phosphoribosylaminoimid 42.4 1E+02 0.0036 27.6 8.5 61 109-173 7-67 (166)
80 3ors_A N5-carboxyaminoimidazol 42.3 91 0.0031 27.9 8.1 53 108-164 4-56 (163)
81 1o4v_A Phosphoribosylaminoimid 41.6 1.1E+02 0.0037 27.9 8.6 66 104-173 10-75 (183)
82 3rg8_A Phosphoribosylaminoimid 41.4 1.2E+02 0.0041 27.0 8.7 52 109-164 4-55 (159)
83 4grd_A N5-CAIR mutase, phospho 41.3 1.2E+02 0.0042 27.3 8.8 64 106-173 11-74 (173)
84 2o8n_A APOA-I binding protein; 41.2 42 0.0014 31.9 6.1 55 90-146 59-116 (265)
85 2amj_A Modulator of drug activ 40.4 39 0.0013 30.1 5.5 65 104-175 9-79 (204)
86 3fro_A GLGA glycogen synthase; 39.7 43 0.0015 31.4 5.9 53 109-163 252-310 (439)
87 1xmp_A PURE, phosphoribosylami 39.5 99 0.0034 27.9 7.9 65 105-173 9-73 (170)
88 2iuy_A Avigt4, glycosyltransfe 38.6 29 0.001 31.9 4.5 51 107-163 161-211 (342)
89 3tem_A Ribosyldihydronicotinam 37.2 36 0.0012 31.0 4.8 41 107-147 1-43 (228)
90 2q62_A ARSH; alpha/beta, flavo 36.9 38 0.0013 31.5 5.0 69 105-175 32-107 (247)
91 8abp_A L-arabinose-binding pro 36.5 2E+02 0.0069 25.5 9.7 112 23-146 108-233 (306)
92 2gek_A Phosphatidylinositol ma 35.9 92 0.0032 28.8 7.5 50 108-162 208-261 (406)
93 2ark_A Flavodoxin; FMN, struct 35.8 43 0.0015 28.9 4.9 41 107-147 4-45 (188)
94 2lnd_A De novo designed protei 35.7 70 0.0024 26.0 5.6 55 105-163 49-103 (112)
95 1u11_A PURE (N5-carboxyaminoim 35.7 1.1E+02 0.0039 27.8 7.7 62 108-173 22-83 (182)
96 3trh_A Phosphoribosylaminoimid 35.7 96 0.0033 27.9 7.1 18 222-239 138-155 (169)
97 2vzf_A NADH-dependent FMN redu 35.5 34 0.0012 29.9 4.2 40 108-147 3-45 (197)
98 2kln_A Probable sulphate-trans 35.3 1.1E+02 0.0038 24.6 7.1 41 108-148 48-92 (130)
99 1rzu_A Glycogen synthase 1; gl 35.2 1.6E+02 0.0055 28.4 9.4 53 108-162 291-344 (485)
100 3lp6_A Phosphoribosylaminoimid 34.9 87 0.003 28.3 6.8 50 109-162 9-58 (174)
101 2qzs_A Glycogen synthase; glyc 33.7 2E+02 0.0067 27.7 9.8 54 107-162 291-345 (485)
102 2ki0_A DS119; beta-alpha-beta, 33.5 19 0.00064 24.1 1.6 21 121-141 13-33 (36)
103 2fzv_A Putative arsenical resi 33.1 42 0.0015 32.1 4.7 68 106-175 57-132 (279)
104 2zki_A 199AA long hypothetical 32.5 39 0.0013 29.0 4.1 39 108-147 5-43 (199)
105 3hp4_A GDSL-esterase; psychrot 31.3 1.6E+02 0.0055 24.1 7.6 67 110-177 4-76 (185)
106 2bfw_A GLGA glycogen synthase; 30.7 1.7E+02 0.0057 24.3 7.7 53 108-162 36-94 (200)
107 1b0z_A Protein (phosphoglucose 30.5 1.3E+02 0.0045 30.6 8.1 86 89-176 85-176 (445)
108 1ufo_A Hypothetical protein TT 30.2 2.3E+02 0.0077 23.2 8.7 48 132-179 167-218 (238)
109 2hna_A Protein MIOC, flavodoxi 29.8 61 0.0021 26.7 4.6 35 109-143 3-37 (147)
110 4b4t_W RPN10, 26S proteasome r 29.7 11 0.00038 36.0 0.0 19 322-340 221-239 (268)
111 1t5b_A Acyl carrier protein ph 29.5 46 0.0016 28.4 4.0 40 108-147 2-46 (201)
112 2l69_A Rossmann 2X3 fold prote 28.9 2.5E+02 0.0086 23.3 8.1 51 119-176 9-59 (134)
113 2fz5_A Flavodoxin; alpha/beta 28.7 54 0.0018 26.1 4.0 38 110-147 2-39 (137)
114 3gff_A IROE-like serine hydrol 28.5 3.7E+02 0.013 25.4 10.6 83 90-178 148-247 (331)
115 5nul_A Flavodoxin; electron tr 28.2 32 0.0011 27.9 2.5 39 110-148 1-39 (138)
116 3ced_A Methionine import ATP-b 27.5 1.2E+02 0.004 24.2 5.8 25 121-145 74-98 (98)
117 3hr4_A Nitric oxide synthase, 27.5 50 0.0017 30.5 4.0 58 87-147 22-79 (219)
118 3sc4_A Short chain dehydrogena 27.5 1.3E+02 0.0044 27.5 6.9 60 85-146 123-198 (285)
119 3rss_A Putative uncharacterize 27.0 78 0.0027 32.7 5.8 55 90-147 36-90 (502)
120 1ur4_A Galactanase; hydrolase, 27.0 3.4E+02 0.012 27.1 10.3 63 83-151 84-168 (399)
121 1bvy_F Protein (cytochrome P45 26.8 38 0.0013 30.1 3.0 41 106-146 20-60 (191)
122 2llw_A Heat shock protein STI1 26.5 31 0.0011 26.6 2.1 52 322-385 6-62 (71)
123 4b4k_A N5-carboxyaminoimidazol 25.9 3.6E+02 0.012 24.4 9.3 60 110-173 25-84 (181)
124 3r6w_A FMN-dependent NADH-azor 25.5 68 0.0023 28.2 4.4 40 108-147 2-46 (212)
125 3c8f_A Pyruvate formate-lyase 25.1 87 0.003 27.2 5.0 52 109-161 71-122 (245)
126 4hs4_A Chromate reductase; tri 24.7 1.2E+02 0.004 26.9 5.9 67 107-175 6-82 (199)
127 3fzy_A RTX toxin RTXA; RTXA to 24.6 1.7E+02 0.0059 27.5 7.1 62 87-148 136-200 (234)
128 1t0i_A YLR011WP; FMN binding p 24.3 86 0.003 26.7 4.8 39 108-146 1-47 (191)
129 4f8x_A Endo-1,4-beta-xylanase; 24.2 1.4E+02 0.0047 29.2 6.7 63 83-148 151-216 (335)
130 1ble_A Fructose permease; phos 23.9 97 0.0033 27.3 5.1 58 79-147 51-108 (163)
131 3qbr_A SJA, sjchgc06286 protei 23.9 27 0.00094 31.7 1.5 31 355-386 36-67 (179)
132 2hpv_A FMN-dependent NADH-azor 23.8 63 0.0021 28.1 3.8 38 108-145 2-45 (208)
133 3k5w_A Carbohydrate kinase; 11 23.7 1.4E+02 0.0049 30.5 7.0 53 90-148 32-84 (475)
134 3oy2_A Glycosyltransferase B73 23.6 1.6E+02 0.0055 27.5 6.9 58 107-164 183-245 (413)
135 1rcu_A Conserved hypothetical 23.1 1.8E+02 0.0061 26.3 6.8 62 108-176 23-91 (195)
136 1sqs_A Conserved hypothetical 22.9 62 0.0021 29.2 3.7 40 108-147 2-44 (242)
137 3qjg_A Epidermin biosynthesis 22.8 70 0.0024 28.5 3.9 34 108-143 6-39 (175)
138 2qip_A Protein of unknown func 22.8 1.2E+02 0.0041 26.0 5.3 34 107-146 109-143 (165)
139 3lwa_A Secreted thiol-disulfid 22.7 3.2E+02 0.011 22.5 8.2 55 108-163 60-122 (183)
140 2a33_A Hypothetical protein; s 22.5 2.8E+02 0.0094 25.3 8.0 63 108-176 14-79 (215)
141 3kij_A Probable glutathione pe 22.1 2.2E+02 0.0074 23.8 6.8 40 122-161 57-99 (180)
142 1zi8_A Carboxymethylenebutenol 22.0 3.4E+02 0.011 22.4 9.7 65 107-178 138-202 (236)
143 2q9u_A A-type flavoprotein; fl 21.9 2E+02 0.0069 27.5 7.4 41 107-147 256-296 (414)
144 3mcu_A Dipicolinate synthase, 21.7 75 0.0026 29.1 4.0 36 107-143 5-40 (207)
145 3p0r_A Azoreductase; structura 21.7 98 0.0034 27.5 4.7 40 108-147 5-50 (211)
146 2wte_A CSA3; antiviral protein 21.7 4.2E+02 0.014 24.4 9.2 74 105-180 32-107 (244)
147 2x6q_A Trehalose-synthase TRET 21.4 94 0.0032 29.3 4.8 42 106-147 39-81 (416)
148 3e03_A Short chain dehydrogena 21.4 1.7E+02 0.0059 26.4 6.5 60 85-146 120-196 (274)
149 2f6i_A ATP-dependent CLP prote 21.1 1.2E+02 0.0041 27.6 5.3 63 79-146 42-106 (215)
150 2lta_A De novo designed protei 26.0 21 0.00072 28.9 0.0 48 108-163 3-50 (110)
151 3svl_A Protein YIEF; E. coli C 20.1 34 0.0012 30.3 1.3 67 107-175 4-81 (193)
152 3vue_A GBSS-I, granule-bound s 20.1 1.2E+02 0.0041 31.0 5.6 54 106-161 325-379 (536)
153 1qzu_A Hypothetical protein MD 20.0 77 0.0026 28.9 3.7 36 106-143 18-54 (206)
No 1
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-78 Score=587.06 Aligned_cols=252 Identities=48% Similarity=0.747 Sum_probs=190.1
Q ss_pred CCcceEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccc
Q 015543 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELD 80 (405)
Q Consensus 1 m~lEa~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~ 80 (405)
|||||||||||+|.||+++||.||||++|++|++.|+..|+++||+++||||+|+|+.+.|++|||+|+.+|+.+|+.++
T Consensus 1 m~lEAtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~D~~~il~aL~~l~ 80 (268)
T 4b4t_W 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQ 80 (268)
T ss_dssp CCCEEEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEESCHHHHHHHHTTCC
T ss_pred CCceeEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcchHHHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015543 81 IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (405)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~ 160 (405)
++|.++|.+||++|+++||||+++++++|||||++|+.+++++++++++|++||+||+|+|||||... .|.++|++|++
T Consensus 81 ~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~-~n~~kLe~l~~ 159 (268)
T 4b4t_W 81 IEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIE-QNTELLDEFIA 159 (268)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCC-SSCCHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCc-cchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988 79999999999
Q ss_pred HHcC--CCCcEEEEecCCCchhhhhhhcCccccCCCCCCCchhHHHHhhhcCCCCCCccCCCCCCCHHHHHHHHhcHHHH
Q 015543 161 AVNN--NDSSHLVHVPTGPNALSDVLISSPVFTADGEGGSGFAAAAAAAAAGGVSDFDFGVDPNIDPELALALRVSMEEE 238 (405)
Q Consensus 161 ~vn~--~d~Shlv~vp~g~~lLsD~l~sSpI~~g~~~~~~~~~~~~~~~~~~~~~~~efgvDp~~DPELa~ALr~SlEEe 238 (405)
++|+ +++||||+||||+++|||+|++|||+.|++.++.+++++++|++++++++|||||||++|||||||||||||||
T Consensus 160 ~~Ng~~~~~s~~v~v~~g~~~lsd~l~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~dpela~alr~s~eee 239 (268)
T 4b4t_W 160 AVNNPQEETSHLLTVTPGPRLLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSMEEE 239 (268)
T ss_dssp HHCSSTTTSCEEEEECCCSSCHHHHHHTSTTSCCCCC-------------------------------------------
T ss_pred HhcCCCCCceeEEEeCCCCccHHHHHhcCCccccCCccccccccccccccccCCcccccCCCCCCCHHHHHHHHHhHHHH
Confidence 9998 57999999999999999999999999998743333222333444556678999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhh
Q 015543 239 RARQEAAAKRAADEA 253 (405)
Q Consensus 239 ~~rq~~~~~~~~~~~ 253 (405)
|+|||++++++.+..
T Consensus 240 ~~rq~~~~~~~~~~~ 254 (268)
T 4b4t_W 240 QQRQERLRQQQQQQD 254 (268)
T ss_dssp ---------------
T ss_pred HHHHHHHhhcccccc
Confidence 999999987765443
No 2
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-45 Score=339.10 Aligned_cols=189 Identities=50% Similarity=0.798 Sum_probs=180.3
Q ss_pred CcceEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhccccc
Q 015543 2 VLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDI 81 (405)
Q Consensus 2 ~lEa~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~ 81 (405)
|+|++|||||+|.||+++||.||||+++++++..|+..|+++||+++||||+|+++.+.+++|||.|+.+++..|+.+.+
T Consensus 1 ~~e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~d~~~i~~~L~~l~~ 80 (192)
T 2x5n_A 1 VLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPV 80 (192)
T ss_dssp CCEEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEESCHHHHHHHHTTCCC
T ss_pred CceEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCCCHHHHHHHHHcCCC
Confidence 68999999999999999999999999999999999999999999999999999997789999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 015543 82 GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAA 161 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~ 161 (405)
+|+++|+.||++|..+|+|++++.+++|||||++++.+.++.++.++++++|+++|+|+||+||++. .|.+ |+.|+++
T Consensus 81 ~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~-~~~~-l~~la~~ 158 (192)
T 2x5n_A 81 RGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQ-NESA-LQHFIDA 158 (192)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESCC----CH-HHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCCCC-ccHH-HHHHHHh
Confidence 9999999999999999999988889999999999998878999999999999999999999999998 6878 9999999
Q ss_pred HcCCCCcEEEEecCCCchhhhhhhcCccccC
Q 015543 162 VNNNDSSHLVHVPTGPNALSDVLISSPVFTA 192 (405)
Q Consensus 162 vn~~d~Shlv~vp~g~~lLsD~l~sSpI~~g 192 (405)
+|++++|||++||+++++|+|.|++|||+.|
T Consensus 159 ~n~~~~s~~~~~~~~~~~l~d~~~~s~~~~~ 189 (192)
T 2x5n_A 159 ANSSDSCHLVSIPPSPQLLSDLVNQSPIGQG 189 (192)
T ss_dssp HCSTTCCEEEEECCCSSCHHHHHHTSTTSCC
T ss_pred ccCCCceEEEEecCcchhHHHHHhcCccccc
Confidence 9999999999999999999999999999985
No 3
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=99.93 E-value=1.3e-26 Score=201.43 Aligned_cols=103 Identities=44% Similarity=0.590 Sum_probs=75.2
Q ss_pred hcCCCCCCccCCCCCCCHHHHHHHHhcHHHHHHHHHHHHHHhhhhhcccCCCCCCccCccccccccCCCCCccccccCCC
Q 015543 208 AAGGVSDFDFGVDPNIDPELALALRVSMEEERARQEAAAKRAADEASRQGKEEEPLSNSQDATMTDNTNNTAAETTEKTA 287 (405)
Q Consensus 208 ~~~~~~~~efgvDp~~DPELa~ALr~SlEEe~~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (405)
.+.|+++|+|||||++||||||||||||||||+||+++++++...++. ... .+ +.
T Consensus 23 ~~~~~~~fefgvDp~~DPeLa~ALr~Smeee~~Rqe~~~~~~~e~saa---~~~------~a--------~~-------- 77 (132)
T 1yx4_A 23 LGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAA---EAG------IA--------TT-------- 77 (132)
T ss_dssp SCCCSSSCCSCSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SSS------SS--------CC--------
T ss_pred cccCccccccCCCCCcCHHHHHHHHHhHHHHHHHHHHHHHhhcccccc---ccc------cc--------cc--------
Confidence 345667899999999999999999999999999999999877655431 000 00 00
Q ss_pred CCCCChHHHHHHHHHhccCCCCCCCCCcccCCCCCCChHHHHHHHHHccccCCC
Q 015543 288 DPMDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDT 341 (405)
Q Consensus 288 ~~~~~e~~~L~~Al~mS~~~~~~~~~~~~~~~~~~~~ee~~ia~A~~ms~~~~~ 341 (405)
...++++++|++++.++-... ....++ +.|+||++|++||+||||+..
T Consensus 78 ~~~~~eeamL~~a~~~~~~~~-----~~~~d~-~~MtEEeqLa~ALqMSMQe~~ 125 (132)
T 1yx4_A 78 GTEDSDDALLKMTISQQEFGR-----TGLPDL-SSMTEEEQIAYAMQMSLQGAE 125 (132)
T ss_dssp CCCSCHHHHHHHHHHHHHHHH-----SSCCCS-TTSCHHHHHHHHHHHSSSSCS
T ss_pred CCcccHHHHHHHhhcccccCC-----CCCCch-hhCChHHHHHHHHHhcccccc
Confidence 022578899999987663222 112233 689999999999999999764
No 4
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=99.84 E-value=1.6e-20 Score=197.10 Aligned_cols=161 Identities=14% Similarity=0.284 Sum_probs=139.6
Q ss_pred ceEEEEEeCChhhcCCCC-CCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCC-------------ceEEECCCCCH
Q 015543 4 EATMICIDNSEWMRNGDY-SPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG-------------VRVLTTPTTDL 69 (405)
Q Consensus 4 Ea~~IvIDnSesMrngD~-~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~-------------~~vLvtlT~D~ 69 (405)
|++|||||+|.||.++|+ .||||+++++++..|+..|+..+|...||||+|++.. ..|+.+++...
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~l~~~~ 87 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPD 87 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCC
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeecCCCCC
Confidence 999999999999999999 8999999999999999999999999999999999864 23677777777
Q ss_pred HHHHHhhcc-cccC-CcccHHHHHHHHHHHhccc--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEE-EEEe
Q 015543 70 GKILACMHE-LDIG-GEMNIAAGIQVAQLALKHR--QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAID-IVNF 144 (405)
Q Consensus 70 ~kils~L~~-l~~~-G~~sL~~gL~iA~lALKhr--~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~Vd-II~F 144 (405)
.+++..|+. +.++ ++++|..||.+|...|+++ ..+..++|||||+++....+..++.++|+.|+++||.|+ ||||
T Consensus 88 ~~~l~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~~~~~~a~~l~~~gI~i~~vig~ 167 (565)
T 1jey_B 88 FDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPF 167 (565)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHHTTEEEEEEESS
T ss_pred HHHHHHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecc
Confidence 788899998 7766 7899999999999999997 444567999999987766667789999999999999999 9999
Q ss_pred CCCCC------------------------------CcHHHHHHHHHHHcC
Q 015543 145 GEDDD------------------------------GKPEKLEALLAAVNN 164 (405)
Q Consensus 145 G~e~~------------------------------~n~~~L~~f~~~vn~ 164 (405)
|.... .|...|+.|++.+++
T Consensus 168 g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G 217 (565)
T 1jey_B 168 SLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEG 217 (565)
T ss_dssp CCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCC
Confidence 86520 245569999999876
No 5
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=1.7e-18 Score=156.50 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=136.2
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhccccc---
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDI--- 81 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~--- 81 (405)
.++||||.|.||...|+.|+||...+.++..|+..+ |..+||||+|++. +.+++++|.|+..+...|..+.+
T Consensus 13 ~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~----~~~~v~lv~F~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~ 87 (218)
T 3ibs_A 13 EVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDEL----DNDKVGMIVFAGD-AFTQLPITSDYISAKMFLESISPSLI 87 (218)
T ss_dssp EEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTC----SSCEEEEEEESSS-EEEEEEEESCHHHHHHHHHTCCGGGC
T ss_pred cEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhC----CCCeEEEEEECCC-ceEeCCCCCCHHHHHHHHHhcCcccC
Confidence 589999999999999999999999999999999863 5889999999987 79999999999999999998865
Q ss_pred -CCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC------------
Q 015543 82 -GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD------------ 148 (405)
Q Consensus 82 -~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~------------ 148 (405)
+|.+++..||..|...|+.+ +..++.||+|.++..+.+ ++..+++.+++.+|+|++||||...
T Consensus 88 ~~g~T~l~~al~~a~~~l~~~--~~~~~~ivllTDG~~~~~--~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~ 163 (218)
T 3ibs_A 88 SKQGTAIGEAINLATRSFTPQ--EGVGRAIIVITDGENHEG--GAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDY 163 (218)
T ss_dssp CSCSCCHHHHHHHHHTTSCSC--SSCCEEEEEEECCTTCCS--CHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCB
T ss_pred CCCCCcHHHHHHHHHHHHhhC--CCCCcEEEEEcCCCCCCC--cHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCce
Confidence 68999999999999888874 467788999998876544 6889999999999999999999852
Q ss_pred -----------CCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 149 -----------DGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 149 -----------~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
..+...|+.+++.+++ +|+.+...
T Consensus 164 ~~~~~g~~~~~~~~~~~L~~iA~~~gG----~~~~~~~~ 198 (218)
T 3ibs_A 164 RRDREGNVIVTRLNEGMCQEIAKDGKG----IYVRVDNS 198 (218)
T ss_dssp CBCTTSCBCEECCCHHHHHHHHHHTEE----EEEEECSS
T ss_pred eEcCCCCEeEecCCHHHHHHHHHhcCC----EEEECCCC
Confidence 1468899999987753 45555543
No 6
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.62 E-value=1.9e-14 Score=130.38 Aligned_cols=160 Identities=8% Similarity=0.072 Sum_probs=125.5
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCC--CCHHHHHHhhcccccC
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--TDLGKILACMHELDIG 82 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT--~D~~kils~L~~l~~~ 82 (405)
.++|+||.|.||. +++|+.+++++..|+..+.-..+..+||||+|++. +.+..+++ .+...+...|..+...
T Consensus 15 divfvlD~SgSm~-----~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 88 (202)
T 1ijb_A 15 DLVFLLDGSSRLS-----EAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDG-SHAYIGLKDRKRPSELRRIASQVKYA 88 (202)
T ss_dssp EEEEEEECBTTSC-----HHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSS-EEEEECTTCCCCHHHHHHHHHTCCCC
T ss_pred cEEEEEECCCCCC-----HHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCC-ceEEEecCCCCCHHHHHHHHHhCcCC
Confidence 5899999999996 46899999999999997644445789999999977 68899988 7889999999999764
Q ss_pred Cc--ccHHHHHHHHHHHh-cccCCCCCCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015543 83 GE--MNIAAGIQVAQLAL-KHRQNKNQRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (405)
Q Consensus 83 G~--~sL~~gL~iA~lAL-Khr~~k~~~~RIVvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f 158 (405)
|+ +++..||+.|...| +....++.++.||||+++..+. ...++...++.||+.+|.|++||||... |...|+.|
T Consensus 89 gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~l~~~gi~i~~igvG~~~--~~~~L~~i 166 (202)
T 1ijb_A 89 GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHA--NLKQIRLI 166 (202)
T ss_dssp CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEESTTS--CHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccchHHHHHHHHHHHHCCCEEEEEecCCcC--CHHHHHHH
Confidence 43 99999999997554 4322345678888888887543 2457889999999999999999999854 56788888
Q ss_pred HHHHcCCCCcEEEEecC
Q 015543 159 LAAVNNNDSSHLVHVPT 175 (405)
Q Consensus 159 ~~~vn~~d~Shlv~vp~ 175 (405)
+... .+.|+..+..
T Consensus 167 A~~~---~~~~~~~~~~ 180 (202)
T 1ijb_A 167 EKQA---PENKAFVLSS 180 (202)
T ss_dssp HHHC---TTCCCEEESS
T ss_pred hCCC---CcccEEEeCC
Confidence 7632 2345555553
No 7
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.62 E-value=1.6e-14 Score=128.70 Aligned_cols=157 Identities=12% Similarity=0.182 Sum_probs=123.7
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECC--CCCHHHHHHhhccccc-
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTP--TTDLGKILACMHELDI- 81 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtl--T~D~~kils~L~~l~~- 81 (405)
.++|+||.|.||. ++||+.++.++..|+..+--.....+||||+|++. +.++.++ +.|+..+..+|..+..
T Consensus 7 div~vlD~SgSm~-----~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 80 (189)
T 1atz_A 7 DVILLLDGSSSFP-----ASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSI-TTIDVPWNVVPEKAHLLSLVDVMQRE 80 (189)
T ss_dssp EEEEEEECSSSSC-----HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSS-EEEEECTTCCCCHHHHHHHHHTCCCC
T ss_pred eEEEEEeCCCCCC-----hhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCc-ceEEEecCCCCCHHHHHHHHHhCcCC
Confidence 5899999999996 48999999999999997543445579999999876 6888998 8999999999999975
Q ss_pred CCcccHHHHHHHHHHHhcccC---CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015543 82 GGEMNIAAGIQVAQLALKHRQ---NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~---~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f 158 (405)
+|.+++..||..|...|.... .+..++++|||+++..+. ++...++.+++.+|.|++||+|... +.+.|+.+
T Consensus 81 ~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~---~~~~~~~~~~~~gi~v~~igvG~~~--~~~~L~~i 155 (189)
T 1atz_A 81 GGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVD---SVDAAADAARSNRVTVFPIGIGDRY--DAAQLRIL 155 (189)
T ss_dssp CCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSS---CCHHHHHHHHHTTEEEEEEEESSSS--CHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCc---hHHHHHHHHHHCCCEEEEEEcCCcC--CHHHHHHH
Confidence 789999999999998886521 123445577777664333 3678889999999999999999865 45678887
Q ss_pred HHHHcCCCCcEEEEecC
Q 015543 159 LAAVNNNDSSHLVHVPT 175 (405)
Q Consensus 159 ~~~vn~~d~Shlv~vp~ 175 (405)
+... ++.|+..+..
T Consensus 156 A~~~---~~~~~~~~~~ 169 (189)
T 1atz_A 156 AGPA---GDSNVVKLQR 169 (189)
T ss_dssp TGGG---GGGGCEEESS
T ss_pred HCCC---cccCEEEecC
Confidence 6533 3467777654
No 8
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.62 E-value=3.2e-15 Score=131.04 Aligned_cols=145 Identities=16% Similarity=0.158 Sum_probs=114.1
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc---cc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL---DI 81 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l---~~ 81 (405)
.++|+||.|.||...++ +|+...+.++ ..+.. |..+||||+|++. +.++.++|.+...+...|..+ .+
T Consensus 8 dvv~vlD~SgSM~~~~~--~~~~~~~~~~----~~~~~--~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~ 78 (182)
T 1shu_X 8 DLYFVLDKSGSVANNWI--EIYNFVQQLA----ERFVS--PEMRLSFIVFSSQ-ATIILPLTGDRGKISKGLEDLKRVSP 78 (182)
T ss_dssp EEEEEEECSGGGGGGHH--HHHHHHHHHH----HHCCC--TTEEEEEEEESSS-EEEEEEEECCHHHHHHHHHHHHTCCC
T ss_pred eEEEEEECCCCcccCHH--HHHHHHHHHH----HHhcC--CCceEEEEEeCCC-ceEEECCCCCHHHHHHHHHhcccCCC
Confidence 58999999999985332 3555555444 44433 8899999999877 689999999998887777765 48
Q ss_pred CCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCC-hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015543 82 GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYD-RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d-~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~ 160 (405)
+|.+++..||..|...|+++..+..++.||+|+++..+.+ +..+...++.+++.+|.|++||||. .+...|+.+..
T Consensus 79 ~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~i~~igvg~---~~~~~L~~ia~ 155 (182)
T 1shu_X 79 VGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD---FEQAQLERIAD 155 (182)
T ss_dssp CSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECSS---CCHHHHHHHSS
T ss_pred CCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCCchhHHHHHHHHHhCCCEEEEEeCCc---CCHHHHHHHhC
Confidence 9999999999999999987654567888999998876543 3456788999999999999999994 35567777765
Q ss_pred H
Q 015543 161 A 161 (405)
Q Consensus 161 ~ 161 (405)
.
T Consensus 156 ~ 156 (182)
T 1shu_X 156 S 156 (182)
T ss_dssp S
T ss_pred C
Confidence 3
No 9
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.61 E-value=1.8e-14 Score=129.98 Aligned_cols=162 Identities=10% Similarity=0.161 Sum_probs=126.1
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEE----CCCCCHHHHHHhhcccc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLT----TPTTDLGKILACMHELD 80 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLv----tlT~D~~kils~L~~l~ 80 (405)
.++||||.|.||.. ++|..+++++..|+..+...++..+||||+|++. +.+++ ++|.|...+...|..+.
T Consensus 17 div~vlD~SgSM~~-----~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~ 90 (223)
T 1q0p_A 17 NIYLVLDGSDSIGA-----SNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATY-PKIWVKVSEADSSNADWVTKQLNEIN 90 (223)
T ss_dssp EEEEEEECSTTTCH-----HHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSS-EEEEECTTSGGGGCHHHHHHHHHTCC
T ss_pred eEEEEEeCCCCCch-----HHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCc-cceeeccccCCCCCHHHHHHHHHhcc
Confidence 58999999999975 4599999999999998877788899999999987 68888 55667888999999987
Q ss_pred c-----CCcccHHHHHHHHHHHhcccCC------CCCCeEEEEEecCCCCC--ChhHHHHHHHH----------HHhCCc
Q 015543 81 I-----GGEMNIAAGIQVAQLALKHRQN------KNQRQRIIVFAGSPVKY--DRKVMEMIGKK----------LKKNSV 137 (405)
Q Consensus 81 ~-----~G~~sL~~gL~iA~lALKhr~~------k~~~~RIVvFvgSpi~~--d~~~l~~~akk----------LKknnI 137 (405)
+ +|.+++..||..|...|..+.. +..++.||||.++..+. ++..+.+.++. +++.+|
T Consensus 91 ~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 170 (223)
T 1q0p_A 91 YEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYL 170 (223)
T ss_dssp TTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGE
T ss_pred cccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcccCCc
Confidence 4 6899999999999999986432 24667788888887664 56666666644 467899
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 138 AIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 138 ~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
.|++||||... +...|+.++...+ +..||..+...
T Consensus 171 ~i~~igvG~~~--~~~~L~~iA~~~~--G~~~~~~~~~~ 205 (223)
T 1q0p_A 171 DVYVFGVGPLV--NQVNINALASKKD--NEQHVFKVKDM 205 (223)
T ss_dssp EEEEEECSSCC--CHHHHHHHSCCCT--TCCCEEETTC-
T ss_pred EEEEEEecCcC--CHHHHHHHhcCCC--CCceEEEcCCH
Confidence 99999999865 4567777764321 12377777654
No 10
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.60 E-value=2.3e-14 Score=127.22 Aligned_cols=137 Identities=11% Similarity=0.081 Sum_probs=112.4
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCC----CHHHHHHhhcccc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT----DLGKILACMHELD 80 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~----D~~kils~L~~l~ 80 (405)
.++|+||.|.||. +++|+.+++++..|+..+--.++..+||||+|++. +.++.+++. +...++..|..+.
T Consensus 19 divfvlD~SgSm~-----~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~-~~~~~~l~~~~~~~~~~~~~~i~~l~ 92 (178)
T 2xgg_A 19 DICFLIDSSGSIG-----IQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTD-VHLQWDLQSPNAVDKQLAAHAVLDMP 92 (178)
T ss_dssp EEEEEEECCTTTC-----HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSS-EEEEECTTSGGGSCHHHHHHHHHHCC
T ss_pred eEEEEEECCCCCC-----HHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCc-eEEEEeCCCCCccCHHHHHHHHHhCC
Confidence 5899999999995 46899999999999997544455689999999987 688999987 7889999999997
Q ss_pred -cCCcccHHHHHHHHHHHhccc---CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 81 -IGGEMNIAAGIQVAQLALKHR---QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 81 -~~G~~sL~~gL~iA~lALKhr---~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
.+|.+++..||+.|...|... ..+..++.||||.++..+ +..++...++.||+.+|.|++||||...
T Consensus 93 ~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~-~~~~~~~~~~~l~~~gi~v~~igvG~~~ 163 (178)
T 2xgg_A 93 YKKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESD-SDFRTVRAAKEIRELGGIVTVLAVGHYV 163 (178)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCC-HHHHHSHHHHHHHHTTCEEEEEECC---
T ss_pred CCCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCC-CCccHHHHHHHHHHCCCEEEEEEcCCcC
Confidence 789999999999999876432 123567888888888754 3456889999999999999999999977
No 11
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=99.59 E-value=1.4e-14 Score=153.72 Aligned_cols=145 Identities=12% Similarity=0.162 Sum_probs=117.1
Q ss_pred ceEEEEEeCChhhcCCC--CCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCc---------eEEECCC---CCH
Q 015543 4 EATMICIDNSEWMRNGD--YSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGV---------RVLTTPT---TDL 69 (405)
Q Consensus 4 Ea~~IvIDnSesMrngD--~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~---------~vLvtlT---~D~ 69 (405)
|++|||||+|.||...| ..||||+++++++..|+..+.-.+|...||||.|++... .++.+++ .+.
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~~~~~~~ 115 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKR 115 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCHHH
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCCCCCHHH
Confidence 78999999999999998 489999999999999999998899999999999998852 3555443 333
Q ss_pred HHHHHhhcc----------cccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCCh-----hHHHHHHHHHHh
Q 015543 70 GKILACMHE----------LDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDR-----KVMEMIGKKLKK 134 (405)
Q Consensus 70 ~kils~L~~----------l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~-----~~l~~~akkLKk 134 (405)
-+.+..|.. +..+.+++|..||.+|...|+++..+...+|||||+++...... ..+..+|+.|++
T Consensus 116 ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~a~~l~~ 195 (609)
T 1jey_A 116 ILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRD 195 (609)
T ss_dssp HHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCchHHHHHHHHHHHHHHh
Confidence 334444322 12246799999999999999987545568999999997765432 378999999999
Q ss_pred CCceEEEEEeCCCC
Q 015543 135 NSVAIDIVNFGEDD 148 (405)
Q Consensus 135 nnI~VdII~FG~e~ 148 (405)
.||.|++|++|...
T Consensus 196 ~gI~i~~igig~~~ 209 (609)
T 1jey_A 196 TGIFLDLMHLKKPG 209 (609)
T ss_dssp HTEEEEEEEBCCTT
T ss_pred cCcEEEEEecCCCC
Confidence 99999999999864
No 12
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=99.57 E-value=4.1e-14 Score=134.10 Aligned_cols=147 Identities=14% Similarity=0.141 Sum_probs=122.7
Q ss_pred eEEEEEeCChhhcCCCCCCcHH-HHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCC----HHHHHHhhccc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRL-RAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTD----LGKILACMHEL 79 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl-~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D----~~kils~L~~l 79 (405)
.++|+||.|.||... .| ...++++..|+..+.-.++..+||||+|++. +.++.+++.. ...++..|..+
T Consensus 20 DivfvlD~SgSM~~~-----~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~-~~~~~~l~~~~~~~~~~~~~~i~~l 93 (266)
T 4hqo_A 20 DLYLLVDGSGSIGYP-----NWITKVIPMLNGLINSLSLSRDTINLYMNLFGSY-TTELIRLGSGQSIDKRQALSKVTEL 93 (266)
T ss_dssp EEEEEEECSTTTCHH-----HHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSS-EEEEECTTSHHHHCHHHHHHHHHHH
T ss_pred eEEEEEECCCCcChh-----HHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCC-cceEEecCCCCccCHHHHHHHHHHh
Confidence 479999999999643 45 3678899999998766678999999999987 7999999964 78889999988
Q ss_pred ----ccCCcccHHHHHHHHHHHhccc-CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHH
Q 015543 80 ----DIGGEMNIAAGIQVAQLALKHR-QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEK 154 (405)
Q Consensus 80 ----~~~G~~sL~~gL~iA~lALKhr-~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~ 154 (405)
.++|.+++..||+.|...|+.+ ..+..++.||||.++..+ ++.++...++.|++.+|.|++||||... +.+.
T Consensus 94 ~~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~-d~~~~~~~a~~l~~~gi~i~~iGiG~~~--~~~~ 170 (266)
T 4hqo_A 94 RKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPN-SKYRALEVANKLKQRNVRLAVIGIGQGI--NHQF 170 (266)
T ss_dssp HHHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCS-CHHHHHHHHHHHHHTTCEEEEEECSSSC--CHHH
T ss_pred hhccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCC-CchHHHHHHHHHHHCCCEEEEEecCccc--CHHH
Confidence 6799999999999999888765 234567888888888754 6788999999999999999999999865 4567
Q ss_pred HHHHHH
Q 015543 155 LEALLA 160 (405)
Q Consensus 155 L~~f~~ 160 (405)
|+.++.
T Consensus 171 L~~iA~ 176 (266)
T 4hqo_A 171 NRLIAG 176 (266)
T ss_dssp HHHHHT
T ss_pred HHHhhC
Confidence 777764
No 13
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.56 E-value=1.2e-14 Score=127.66 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=118.6
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccc---c
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELD---I 81 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~---~ 81 (405)
.++|+||.|.||.. + |...++++..++..+ .+|..+||||+|++. +.++.++|.+...+...|..+. +
T Consensus 9 div~vlD~SgSM~~-~-----~~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~-~~~~~~l~~~~~~~~~~i~~l~~~~~ 79 (185)
T 3n2n_F 9 DLYFILDKSGSVLH-H-----WNEIYYFVEQLAHKF--ISPQLRMSFIVFSTR-GTTLMKLTEDREQIRQGLEELQKVLP 79 (185)
T ss_dssp EEEEEEECSGGGGG-G-----HHHHHHHHHHHHHHC--CCTTEEEEEEEESSS-EEEEEEEECCHHHHHHHHHHHHTCCC
T ss_pred eEEEEEeCCCChhh-h-----HHHHHHHHHHHHHHh--CCCCcEEEEEEEecC-ceEEeccCCCHHHHHHHHHHHhhhcC
Confidence 48999999999985 2 455566666666665 347899999999877 7999999999999988888774 6
Q ss_pred CCcccHHHHHHHHHHHhcc--cCCCCCCeEEEEEecCCCCCChh-HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015543 82 GGEMNIAAGIQVAQLALKH--RQNKNQRQRIIVFAGSPVKYDRK-VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALKh--r~~k~~~~RIVvFvgSpi~~d~~-~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f 158 (405)
+|.+++..||+.|...|.. +.....++.||+|.++..+.+.. ++...++.+++.+|.|++|||| . .+...|+.+
T Consensus 80 ~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~igvg--~-~~~~~L~~i 156 (185)
T 3n2n_F 80 GGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVK--D-FNETQLARI 156 (185)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTEEEEEEECS--S-CCHHHHTTT
T ss_pred CCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcccchHHHHHHHHHCCCEEEEEEec--c-CCHHHHHHH
Confidence 8999999999999988743 22334667888888887543322 5578999999999999999999 3 456677776
Q ss_pred HHHHcCCCCcEEEEecC
Q 015543 159 LAAVNNNDSSHLVHVPT 175 (405)
Q Consensus 159 ~~~vn~~d~Shlv~vp~ 175 (405)
+. .+.|+..+..
T Consensus 157 A~-----~~~~~~~~~~ 168 (185)
T 3n2n_F 157 AD-----SKDHVFPVND 168 (185)
T ss_dssp SS-----SGGGEEEHHH
T ss_pred hC-----CCCCeEEecc
Confidence 53 2356766654
No 14
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.56 E-value=1.5e-13 Score=141.48 Aligned_cols=147 Identities=14% Similarity=0.148 Sum_probs=123.2
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCC--------CCHHHHHHhh
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--------TDLGKILACM 76 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT--------~D~~kils~L 76 (405)
.++||||.|.||. +.++||...+.++..|+.. ..|...||||+|.+. +.+++++| .+...+...|
T Consensus 79 dvv~VLD~SGSM~---~~~~rl~~ak~a~~~ll~~---L~~~drv~lV~Fs~~-a~~~~p~t~~l~~~~~~~~~~l~~~I 151 (464)
T 4fx5_A 79 VEVIIIDCSGSMD---YPRTKMMAAKEATKVAIDT---LTDGAFFAVVAGTEG-ARVVYPTGGQLLRADYQSRAAAKEAV 151 (464)
T ss_dssp EEEEEEECCGGGG---TTTHHHHHHHHHHHHHHHH---SCTTCEEEEEEESSS-EEEEESSSSSCEECSHHHHHHHHHHH
T ss_pred eEEEEEEcCcccC---CCCchHHHHHHHHHHHHHh---CCCCCEEEEEEEcCc-eEEEecCCcccccCCHHHHHHHHHHH
Confidence 5899999999997 4589999999999999987 568899999999887 69999986 6788899999
Q ss_pred cccccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 015543 77 HELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKL 155 (405)
Q Consensus 77 ~~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L 155 (405)
..+.++|++++..||..|...|+.+ +...+.||+|+++..+. ++..+....+ ..+.+|+|++||||... |...|
T Consensus 152 ~~L~~~GgT~l~~aL~~A~~~l~~~--~~~~~~IILLTDG~~~~~~~~~l~~~~~-a~~~~i~i~tiGiG~~~--d~~~L 226 (464)
T 4fx5_A 152 GRLHANGGTAMGRWLAQAGRIFDTA--PSAIKHAILLTDGKDESETPADLARAIQ-SSIGNFTADCRGIGEDW--EPKEL 226 (464)
T ss_dssp HTCCCCSCCCHHHHHHHHHHHHTTC--TTSEEEEEEEESSCCTTSCHHHHHHHHH-HHTTTCEEEEEEESSSS--CHHHH
T ss_pred HcCCCCCCCcHHHHHHHHHHHHhcC--CCCCCEEEEEcCCCCCCCChHHHHHHHH-HhcCCCeEEEEEeCCcc--CHHHH
Confidence 9999999999999999999999874 35678899999887664 4445544443 45789999999999865 56789
Q ss_pred HHHHHHHc
Q 015543 156 EALLAAVN 163 (405)
Q Consensus 156 ~~f~~~vn 163 (405)
+.+++.++
T Consensus 227 ~~IA~~tg 234 (464)
T 4fx5_A 227 RKIADALL 234 (464)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhCC
Confidence 99988663
No 15
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.55 E-value=3.2e-13 Score=121.44 Aligned_cols=133 Identities=11% Similarity=0.119 Sum_probs=109.2
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCC--CCHHHHHHhhcccccC
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--TDLGKILACMHELDIG 82 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT--~D~~kils~L~~l~~~ 82 (405)
.++||||.|.||.+ |+..++++..|+..+.-.++..+||||+|++. +.++.++| .+...++..|..+.+.
T Consensus 8 div~vlD~SgSm~~-------~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 79 (200)
T 1v7p_C 8 DVVVVCDESNSIYP-------WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANN-PRVVFNLNTYKTKEEMIVATSQTSQY 79 (200)
T ss_dssp EEEEEEECCTTCCC-------HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSS-EEEEECTTTCSSHHHHHHHHHHCCCC
T ss_pred cEEEEEECCCCccc-------HHHHHHHHHHHHHhcCCCCCceEEEEEEECCC-ceEEEeCCCcCCHHHHHHHHHhhhcc
Confidence 58999999999983 88899999999987654567899999999987 68999998 4778899999999764
Q ss_pred -C-cccHHHHHHHHHHH-hccc--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 83 -G-EMNIAAGIQVAQLA-LKHR--QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 83 -G-~~sL~~gL~iA~lA-LKhr--~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
| .+++..||+.|... |... ..+..++.||||+++..+ +...+...++.||+.+|.|++||+|.
T Consensus 80 ~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~-~~~~~~~~~~~~~~~gi~i~~igvg~ 147 (200)
T 1v7p_C 80 GGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESH-DGSMLKAVIDQCNHDNILRFGIAVLG 147 (200)
T ss_dssp CCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCS-CGGGHHHHHHHHHHTTEEEEEEEECH
T ss_pred CCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCC-CcccHHHHHHHHHHCCCEEEEEEecc
Confidence 4 59999999999886 4321 123567788888888755 56667889999999999999999953
No 16
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.55 E-value=2.8e-13 Score=124.00 Aligned_cols=162 Identities=11% Similarity=0.167 Sum_probs=119.8
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCC--CCHHHHHHhhcccccC
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--TDLGKILACMHELDIG 82 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT--~D~~kils~L~~l~~~ 82 (405)
.++|+||.|.||.+ |+..++++..|+..+.-.++..+||||+|++. +.++.+++ .+...++..|..+...
T Consensus 24 div~vlD~SgSM~~-------~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 95 (223)
T 2b2x_A 24 DIVIVLDGSNSIYP-------WESVIAFLNDLLKRMDIGPKQTQVGIVQYGEN-VTHEFNLNKYSSTEEVLVAANKIVQR 95 (223)
T ss_dssp EEEEEEECSTTCCC-------HHHHHHHHHHHHTTSCCSTTSCCEEEEEESSS-EEEEECTTTCCSHHHHHHHHTTCCCC
T ss_pred eEEEEEECCCChhh-------HHHHHHHHHHHHHhcccCCCCeEEEEEEeCCC-ccEEEecCCCCCHHHHHHHHHhhhcc
Confidence 47999999999983 88999999999987655678999999999877 68888886 3667889999988754
Q ss_pred -C-cccHHHHHHHHHHH-hccc--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCc----HH
Q 015543 83 -G-EMNIAAGIQVAQLA-LKHR--QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGK----PE 153 (405)
Q Consensus 83 -G-~~sL~~gL~iA~lA-LKhr--~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n----~~ 153 (405)
| .+++..||+.|... +... ..+..++.||||.++..+. ..++...++.+++.+|.|++||||... +. ..
T Consensus 96 gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~-~~~~~~~~~~~~~~gi~v~~igvG~~~-~~~~~~~~ 173 (223)
T 2b2x_A 96 GGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHD-NYRLKQVIQDCEDENIQRFSIAILGHY-NRGNLSTE 173 (223)
T ss_dssp CCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTT-GGGHHHHHHHHHTTTEEEEEEEECGGG-C---CCCH
T ss_pred CCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCC-CccHHHHHHHHHHCCCEEEEEEecCcc-ccccccch
Confidence 4 49999999999876 4311 1245677788888887553 447889999999999999999999864 21 11
Q ss_pred HHHHHHHHHcCC-CCcEEEEecCC
Q 015543 154 KLEALLAAVNNN-DSSHLVHVPTG 176 (405)
Q Consensus 154 ~L~~f~~~vn~~-d~Shlv~vp~g 176 (405)
.+....+.+-+. .+.||..+...
T Consensus 174 ~~~~~L~~iA~~p~~g~~~~~~~~ 197 (223)
T 2b2x_A 174 KFVEEIKSIASEPTEKHFFNVSDE 197 (223)
T ss_dssp HHHHHHHTTSCSSGGGTEEEESST
T ss_pred hHHHHHHHHhCCCchhcEEEeCCH
Confidence 122333333333 34566666644
No 17
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.53 E-value=3.5e-14 Score=126.29 Aligned_cols=161 Identities=12% Similarity=0.119 Sum_probs=123.1
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCC--CHHHHHHhhcccc-c
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT--DLGKILACMHELD-I 81 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~--D~~kils~L~~l~-~ 81 (405)
.++|+||.|.||... +|...++++..|+..+. ++..+||||+|++. +.++.+++. +...++..|..+. +
T Consensus 11 div~vlD~SgSM~~~-----~~~~~~~~~~~~~~~l~--~~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~ 82 (198)
T 1n3y_A 11 DIVFLIDGSGSISSR-----NFATMMNFVRAVISQFQ--RPSTQFSLMQFSNK-FQTHFTFEEFRRSSNPLSLLASVHQL 82 (198)
T ss_dssp EEEEEEECCTTSCHH-----HHHHHHHHHHHHHTTSC--TTTEEEEEEEESSS-EEEEECHHHHHHCSSGGGGGTTCCCC
T ss_pred eEEEEEECCCCCCHH-----HHHHHHHHHHHHHHhcC--CCCcEEEEEEeCCC-ccEEEecCccCCHHHHHHHHhcCcCC
Confidence 589999999999864 45677788888888765 89999999999987 688888864 2345777787775 6
Q ss_pred CCcccHHHHHHHHHHHh-ccc--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC--CcHHHHH
Q 015543 82 GGEMNIAAGIQVAQLAL-KHR--QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDD--GKPEKLE 156 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lAL-Khr--~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~--~n~~~L~ 156 (405)
+|.+++..||+.|...| +.. ..+..++.||||.++..+.++.++...++.+++.+|.|++||+|.... .+...|+
T Consensus 83 ~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~ 162 (198)
T 1n3y_A 83 QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELN 162 (198)
T ss_dssp CSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHH
T ss_pred CCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccccccccccHHHHH
Confidence 89999999999998544 431 123467788888888877677778889999999999999999998651 1356777
Q ss_pred HHHHHHcCCCCcEEEEecCC
Q 015543 157 ALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 157 ~f~~~vn~~d~Shlv~vp~g 176 (405)
.++.. +++.|+..+...
T Consensus 163 ~iA~~---~~g~~~~~~~~~ 179 (198)
T 1n3y_A 163 DIASK---PSQEHIFKVEDF 179 (198)
T ss_dssp HHSCS---SSGGGEEEESSG
T ss_pred HHHcC---CCcccEEEeCCH
Confidence 77643 345676666543
No 18
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=99.53 E-value=4.5e-14 Score=125.97 Aligned_cols=160 Identities=15% Similarity=0.159 Sum_probs=123.0
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCC--CHHHHHHhhcccc-c
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT--DLGKILACMHELD-I 81 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~--D~~kils~L~~l~-~ 81 (405)
.++|+||.|.||. +++|+..++++..|+..+. ++..+||||+|++. +.++.+++. +...+..+|..+. .
T Consensus 7 div~vlD~SgSm~-----~~~~~~~k~~~~~~~~~l~--~~~~~v~vv~f~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 78 (194)
T 1mf7_A 7 DIAFLIDGSGSII-----PHDFRRMKEFVSTVMEQLK--KSKTLFSLMQYSEE-FRIHFTFKEFQNNPNPRSLVKPITQL 78 (194)
T ss_dssp EEEEEEECCTTSC-----HHHHHHHHHHHHHHHHHHC--CTTEEEEEEEESSS-EEEEECHHHHHHSCCHHHHHTTCCCC
T ss_pred eEEEEEeCCCCCC-----HHHHHHHHHHHHHHHHhcC--CCCeEEEEEEecCC-ceEEEecCCcCCHHHHHHHHHhCcCC
Confidence 6899999999996 3689999999999999765 56789999999877 688898886 4567888899887 4
Q ss_pred CCcccHHHHHHHHHHHhcc-c--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCC---cHHHH
Q 015543 82 GGEMNIAAGIQVAQLALKH-R--QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDG---KPEKL 155 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALKh-r--~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~---n~~~L 155 (405)
+|.+++..||+.|...|.. . ..+..++.||||.++..+.++..+...++.+++.+|.|++||||... + +.+.|
T Consensus 79 ~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~~~~~~~~~~~~gi~v~~igvG~~~-~~~~~~~~L 157 (194)
T 1mf7_A 79 LGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAF-RSEKSRQEL 157 (194)
T ss_dssp CSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEESGGG-CSHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchhhHHHHHHHHHCCCEEEEEEecccc-cccccHHHH
Confidence 8999999999999865532 1 12345678888888886645656677889999999999999999866 3 24566
Q ss_pred HHHHHHHcCCCCcEEEEecCC
Q 015543 156 EALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 156 ~~f~~~vn~~d~Shlv~vp~g 176 (405)
+.++.. +.+.|+..+..-
T Consensus 158 ~~iA~~---~~~~~~~~~~~~ 175 (194)
T 1mf7_A 158 NTIASK---PPRDHVFQVNNF 175 (194)
T ss_dssp HHHSCS---SHHHHEEEESSG
T ss_pred HHHhCC---CCcccEEEeCCH
Confidence 665432 123577777643
No 19
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=99.53 E-value=1.5e-13 Score=130.71 Aligned_cols=163 Identities=13% Similarity=0.113 Sum_probs=125.4
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCC----HHHHHHhhcccc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTD----LGKILACMHELD 80 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D----~~kils~L~~l~ 80 (405)
.++|+||.|.||... +++...++++..|+..+.......+||||+|++. +.++.+++.+ ...++.+|..+.
T Consensus 23 div~vlD~SgSM~~~----~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~-~~~~~~l~~~~~~~~~~l~~~i~~l~ 97 (281)
T 4hqf_A 23 DLYLLMDGSGSIRRH----NWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNN-AREIIRLHSDASKNKEKALIIIKSLL 97 (281)
T ss_dssp EEEEEEECCCCSSTH----HHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETT-EEEEEEECSSCSSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCcCHH----HHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCC-ceEEEEccccCccCHHHHHHHHHHHh
Confidence 489999999999753 2337889999999998766666899999999987 6888877764 778888888875
Q ss_pred ----cCCcccHHHHHHHHHHHhcccC-CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 015543 81 ----IGGEMNIAAGIQVAQLALKHRQ-NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKL 155 (405)
Q Consensus 81 ----~~G~~sL~~gL~iA~lALKhr~-~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L 155 (405)
++|.+++..||+.|...|..+. .++.++.||||.++..+ ++.++...++.|++.+|.|.+||+|... +.+.|
T Consensus 98 ~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~-d~~~~~~~~~~l~~~gv~i~~igiG~~~--~~~~L 174 (281)
T 4hqf_A 98 STNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPD-SIQDSLKESRKLSDRGVKIAVFGIGQGI--NVAFN 174 (281)
T ss_dssp HTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCS-CHHHHHHHHHHHHHTTCEEEEEEESSSC--CHHHH
T ss_pred hccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCC-CcHHHHHHHHHHHHCCCEEEEEeCCCcc--CHHHH
Confidence 6899999999999988887542 23456778888877644 6778999999999999999999999875 45667
Q ss_pred HHHHHHHcCCCC-cEEEEecCC
Q 015543 156 EALLAAVNNNDS-SHLVHVPTG 176 (405)
Q Consensus 156 ~~f~~~vn~~d~-Shlv~vp~g 176 (405)
+.+...-. .++ .|++.+..-
T Consensus 175 ~~iA~~~~-~~g~~~~~~~~~~ 195 (281)
T 4hqf_A 175 RFLVGCHP-SDGKCNLYADSAW 195 (281)
T ss_dssp HHHTTSCS-SSSCCTTEEEECG
T ss_pred HhhhCCCC-CCCCCceEEecch
Confidence 77754211 122 466666544
No 20
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.51 E-value=1.8e-15 Score=134.31 Aligned_cols=149 Identities=17% Similarity=0.288 Sum_probs=121.2
Q ss_pred ceEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCC
Q 015543 4 EATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGG 83 (405)
Q Consensus 4 Ea~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~~G 83 (405)
-.++||||.|.||. ++||...+.++..|+... .++..+||||+|.+..+++++++|.+...+...|..+.++|
T Consensus 6 ~~vv~vlD~SgSM~-----~~~~~~~k~~~~~~~~~~--~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~i~~l~~~g 78 (189)
T 2x31_A 6 RVLIFAVDASGSAA-----VARLSEAKGAVELLLGRA--YAARDHVSLITFRGTAAQVLLQPSRSLTQTKRQLQGLPGGG 78 (189)
T ss_dssp CEEEEEEECCTTSC-----C--CHHHHHHHHHHHHHS--CTTTSCCCEEEESBSCCCBCTTTCSCHHHHHHHHHHCCCCB
T ss_pred eEEEEEEECCCCCC-----chHHHHHHHHHHHHHHHh--cCCCcEEEEEEECCCCceEecCCCCCHHHHHHHHhcCCCCC
Confidence 46899999999995 579999999999999763 37899999999997667999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCCh----------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHH
Q 015543 84 EMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDR----------KVMEMIGKKLKKNSVAIDIVNFGEDDDGKPE 153 (405)
Q Consensus 84 ~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~----------~~l~~~akkLKknnI~VdII~FG~e~~~n~~ 153 (405)
.+++..||..|...|+....+..++.||+|+++..+... .++..+++.+++.+|.|.+|+||... ..
T Consensus 79 ~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig~g~~~---~~ 155 (189)
T 2x31_A 79 GTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDTAMRP---NP 155 (189)
T ss_dssp CCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHHHHHSS---CS
T ss_pred CCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEEecCCCC---HH
Confidence 999999999999999875555678888888887765421 23445677889999999999999753 23
Q ss_pred HHHHHHHHH
Q 015543 154 KLEALLAAV 162 (405)
Q Consensus 154 ~L~~f~~~v 162 (405)
.|+.+++.+
T Consensus 156 ~L~~iA~~~ 164 (189)
T 2x31_A 156 ALVDLARTM 164 (189)
T ss_dssp SSCSTTTEE
T ss_pred HHHHHHHhc
Confidence 666666544
No 21
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.50 E-value=5.7e-13 Score=120.95 Aligned_cols=163 Identities=10% Similarity=0.152 Sum_probs=119.3
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCC--CCHHHHHHhhcccccC
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--TDLGKILACMHELDIG 82 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT--~D~~kils~L~~l~~~ 82 (405)
.++|+||.|.||.+ |+..+.++..|+..+--.++..+||||+|++. +.++.+++ .+...++..|..+.+.
T Consensus 9 div~vlD~SgSm~~-------~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 80 (213)
T 1pt6_A 9 DIVIVLDGSNSIYP-------WDSVTAFLNDLLKRMDIGPKQTQVGIVQYGEN-VTHEFNLNKYSSTEEVLVAAKKIVQR 80 (213)
T ss_dssp EEEEEEECCTTCCC-------HHHHHHHHHHHHTTSCBSTTSBEEEEEEESSS-EEEEECTTTCSSHHHHHHHHHTCCCC
T ss_pred cEEEEEECCCChhh-------HHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCC-ccEEEeccccCCHHHHHHHHHhccCC
Confidence 58999999999983 78888999999886544578999999999987 68888886 4677888999988754
Q ss_pred -C-cccHHHHHHHHHHH-hccc--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC---CcHHH
Q 015543 83 -G-EMNIAAGIQVAQLA-LKHR--QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDD---GKPEK 154 (405)
Q Consensus 83 -G-~~sL~~gL~iA~lA-LKhr--~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~---~n~~~ 154 (405)
| .+++..||..|... |+.. ..+..++.||||.++..+. ..++...++.|++.+|.|++||||.... .+...
T Consensus 81 ~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~-~~~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~ 159 (213)
T 1pt6_A 81 GGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHD-NHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEK 159 (213)
T ss_dssp CCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSC-SHHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHH
T ss_pred CCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCC-CccHHHHHHHHHHCCCEEEEEEeccccccccccchh
Confidence 5 48999999999876 4411 1245677888888887554 3478889999999999999999997430 01112
Q ss_pred HHHHHHHHcCC-CCcEEEEecCC
Q 015543 155 LEALLAAVNNN-DSSHLVHVPTG 176 (405)
Q Consensus 155 L~~f~~~vn~~-d~Shlv~vp~g 176 (405)
+....+.+-+. .+.||..+...
T Consensus 160 ~~~~L~~iA~~~~~g~~~~~~~~ 182 (213)
T 1pt6_A 160 FVEEIKSIASEPTEKHFFNVSDE 182 (213)
T ss_dssp HHHHHHHHSCSSHHHHEEEESSG
T ss_pred hHHHHHHHhCCCchhcEEEeCCH
Confidence 22333333332 34577777643
No 22
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.46 E-value=6.3e-13 Score=134.46 Aligned_cols=161 Identities=10% Similarity=0.159 Sum_probs=124.2
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEE----CCCCCHHHHHHhhcccc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLT----TPTTDLGKILACMHELD 80 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLv----tlT~D~~kils~L~~l~ 80 (405)
.++|+||.|.||.. +||+.+++++..|+..+...++..+||||+|++. +.+++ ++|.|...++..|..+.
T Consensus 3 div~vlD~SgSM~~-----~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~ 76 (497)
T 1rrk_A 3 NIYLVLDGSDSIGA-----SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATY-PKIWVKVSEADSSNADWVTKQLNEIN 76 (497)
T ss_dssp EEEEEEECSTTTCH-----HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSS-EEEEECTTSGGGGCHHHHHHHHHHCC
T ss_pred eEEEEEECCCCcch-----hhHHHHHHHHHHHHHHhhccCCCceEEEEEecCC-ceEeeccccccccCHHHHHHHHHhCc
Confidence 47999999999965 8999999999999998877888899999999977 68888 67788999999999987
Q ss_pred -----cCCcccHHHHHHHHHHHhcccCC------CCCCeEEEEEecCCCCCChhHHHHHHHHHHhC-------------C
Q 015543 81 -----IGGEMNIAAGIQVAQLALKHRQN------KNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKN-------------S 136 (405)
Q Consensus 81 -----~~G~~sL~~gL~iA~lALKhr~~------k~~~~RIVvFvgSpi~~d~~~l~~~akkLKkn-------------n 136 (405)
++|.+++..||+.|...|..+.. +..++.||||.++..+... ++..+++.+++. +
T Consensus 77 ~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (497)
T 1rrk_A 77 YEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG-DPITVIDEIRDLLYIGKDRKNPREDY 155 (497)
T ss_dssp GGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSS-CTHHHHHHHHHHTTCSSCC-CCCGGG
T ss_pred CccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCC-ChhHHHHHHHHHhhhhcccccchhcC
Confidence 46799999999999999964322 3456778888888765421 344444444444 9
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 137 VAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 137 I~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
|+|.+||+|... +...|+.|+...+ +..|+..+...
T Consensus 156 i~v~~igvG~~~--~~~~L~~iA~~~~--g~~~~~~~~~~ 191 (497)
T 1rrk_A 156 LDVYVFGVGPLV--NQVNINALASKKD--NEQHVCKVKDM 191 (497)
T ss_dssp EEEEEEECSSSC--CHHHHHHHSCCCT--TCCCEEETTCH
T ss_pred eeEEEecCCCcc--CHHHHHHHhcCCC--CcceEEEeCCH
Confidence 999999999866 4567888765321 22377777643
No 23
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.42 E-value=1.2e-12 Score=133.10 Aligned_cols=163 Identities=14% Similarity=0.193 Sum_probs=125.5
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCC----CHHHHHHhhcccc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT----DLGKILACMHELD 80 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~----D~~kils~L~~l~ 80 (405)
.+||+||.|.||.. ++|+..++++..|+..+...++..+||||+|++. +.++.+++. |...++..|..+.
T Consensus 11 divfvlD~SgSM~~-----~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~-~~~~~~l~~~~~~~~~~~~~~l~~l~ 84 (509)
T 2odp_A 11 NLYLLLDASQSVSE-----NDFLIFKESASLMVDRIFSFEINVSVAIITFASE-PKVLMSVLNDNSRDMTEVISSLENAN 84 (509)
T ss_dssp EEEEEEECSTTSCH-----HHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSS-EEEEECTTSGGGGCHHHHHHHHHTCC
T ss_pred eEEEEEeCCCccch-----hhHHHHHHHHHHHHHHhhccCCCceEEEEEccCC-CceeEeccCCCCCCHHHHHHHHHhcc
Confidence 48999999999974 4678999999999998766689999999999877 699999986 8999999999997
Q ss_pred cC-----CcccHHHHHHHHHHHhcccCC---------CCCCeEEEEEecCCCCC--ChhHHHHHHHHHH------hCCce
Q 015543 81 IG-----GEMNIAAGIQVAQLALKHRQN---------KNQRQRIIVFAGSPVKY--DRKVMEMIGKKLK------KNSVA 138 (405)
Q Consensus 81 ~~-----G~~sL~~gL~iA~lALKhr~~---------k~~~~RIVvFvgSpi~~--d~~~l~~~akkLK------knnI~ 138 (405)
.. |++++..||+.|...|+.+.. +..++.||||+++..+. ++..+.+.++.+. +.+|.
T Consensus 85 ~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 164 (509)
T 2odp_A 85 YKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLD 164 (509)
T ss_dssp GGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGEE
T ss_pred cccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhccccccCceE
Confidence 65 889999999999988854211 12457788888887554 3444444444331 88999
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 139 IDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 139 VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
|++||||... .+...|+.++... ++..|+..+...
T Consensus 165 i~~iGvG~~~-~~~~~L~~iA~~~--~G~~~~~~~~~~ 199 (509)
T 2odp_A 165 IYAIGVGKLD-VDWRELNELGSKK--DGERHAFILQDT 199 (509)
T ss_dssp EEEEEESSSC-CCHHHHHHHSCCC--TTCCCEEEESSH
T ss_pred EEEEEcCCCc-ccHHHHHhhccCC--CCceeeEEecCH
Confidence 9999999973 3667888887533 234577777654
No 24
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=99.33 E-value=9.6e-12 Score=131.79 Aligned_cols=162 Identities=10% Similarity=0.142 Sum_probs=125.2
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCC----CHHHHHHhhcccc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT----DLGKILACMHELD 80 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~----D~~kils~L~~l~ 80 (405)
.++|+||.|.||.. ++|...++++..|+..+.......+||||+|++. +.+++++|. |...++.+|..+.
T Consensus 245 div~vlD~SgSM~~-----~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~-~~~~~~l~~~~~~~~~~~~~~i~~l~ 318 (741)
T 3hrz_D 245 NIYLVLDGSGSIGA-----SDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATY-PKIWVKVSEADSSNADWVTKQLNEIN 318 (741)
T ss_dssp EEEEEEECSTTTCH-----HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSS-EEEEECTTSGGGGCHHHHHHHHTTCC
T ss_pred eEEEEeccCCcccc-----cchHHHHHHHHHHHHhhhccCCCceEEEEEeccC-CceeEeecccCCcCHHHHHHHHHhcc
Confidence 48999999999964 4588999999999998776677789999999987 699999998 8999999999997
Q ss_pred -----cCCcccHHHHHHHHHHHhccc-----C-CCCCCeEEEEEecCCCCC--ChhHHHHHHH----------HHHhCCc
Q 015543 81 -----IGGEMNIAAGIQVAQLALKHR-----Q-NKNQRQRIIVFAGSPVKY--DRKVMEMIGK----------KLKKNSV 137 (405)
Q Consensus 81 -----~~G~~sL~~gL~iA~lALKhr-----~-~k~~~~RIVvFvgSpi~~--d~~~l~~~ak----------kLKknnI 137 (405)
.+|.+++..||+.|...|... . .+..++.||||.++..+. ++......++ .+++.+|
T Consensus 319 ~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~~~gi 398 (741)
T 3hrz_D 319 YEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYL 398 (741)
T ss_dssp GGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGE
T ss_pred cccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhcccccccccccCe
Confidence 789999999999999988321 1 123556788888886543 4544444333 6788999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 138 AIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 138 ~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
.|++||||... +...|+.|....+ +..|+..+..-
T Consensus 399 ~i~~igvG~~~--~~~~L~~ia~~~~--g~~~~~~~~~~ 433 (741)
T 3hrz_D 399 DVYVFGVGPLV--NQVNINALASKKD--NEQHVFKVKDM 433 (741)
T ss_dssp EEEEEECSSSC--CHHHHHHHSCCCT--TCCCEECBSSH
T ss_pred eEEEEeCCCcC--CHHHHHHHhcCCC--CcceEEEeCCH
Confidence 99999999855 5567888765332 22378777653
No 25
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=99.30 E-value=3.9e-11 Score=108.32 Aligned_cols=140 Identities=13% Similarity=0.160 Sum_probs=110.2
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCC--CHHHHHHhhcccccC
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT--DLGKILACMHELDIG 82 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~--D~~kils~L~~l~~~ 82 (405)
.++|+||.|.||. +.+|...++++..|+..+.-..+..+||||+|++. +.+..+++. +...++.+|..+...
T Consensus 23 DivfvlD~S~Sm~-----~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 96 (199)
T 3zqk_A 23 DVAFVLEGSDKIG-----EADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYM-VTVEYPFSEAQSKGDILQRLREIRYQ 96 (199)
T ss_dssp EEEEEEECCTTTC-----HHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSS-EEEEECTTSCCCHHHHHHHHHHCCCC
T ss_pred CEEEEEECCCCCC-----HHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCc-ccEEEecCCcCCHHHHHHHHHhCcCC
Confidence 4899999999996 57899999999999998766678999999999987 689999886 888999999999754
Q ss_pred -C-cccHHHHHHHHHHHhcc-c--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHH
Q 015543 83 -G-EMNIAAGIQVAQLALKH-R--QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEA 157 (405)
Q Consensus 83 -G-~~sL~~gL~iA~lALKh-r--~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~ 157 (405)
| .+++..||+.|...|.. . ..+..++.||+|.++....+-.. + +.+|.|++||+|... +...|+.
T Consensus 97 gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~~-------~-~~~v~v~~iGiG~~~--~~~~L~~ 166 (199)
T 3zqk_A 97 GGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIKR-------L-PGDIQVVPIGVGPNA--NVQELER 166 (199)
T ss_dssp CCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCCC-------C-CTTEEEEEEEESTTC--CHHHHHH
T ss_pred CCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHHH-------H-hCCCEEEEEEcCCCC--CHHHHHH
Confidence 4 49999999999764321 1 12356688888988875443222 1 379999999999744 5678888
Q ss_pred HHH
Q 015543 158 LLA 160 (405)
Q Consensus 158 f~~ 160 (405)
+..
T Consensus 167 iA~ 169 (199)
T 3zqk_A 167 IGW 169 (199)
T ss_dssp HHT
T ss_pred HhC
Confidence 864
No 26
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.17 E-value=1.3e-10 Score=103.15 Aligned_cols=129 Identities=9% Similarity=0.085 Sum_probs=95.6
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCH--HHHHHhhcccc-c
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDL--GKILACMHELD-I 81 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~--~kils~L~~l~-~ 81 (405)
.++|+||.|.||. +.+|+.+++++..|+..+ ..+..+||||++++. +.+..+++... ..+...+..+. +
T Consensus 4 divfvlD~S~Sm~-----~~~~~~~k~~~~~~~~~l--~~~~~rv~vv~fs~~-~~~~~~l~~~~~~~~~~~~~~~i~~~ 75 (179)
T 1mjn_A 4 DLVFLFDGSMSLQ-----PDEFQKILDFMKDVMKKC--SNTSYQFAAVQFSTS-YKTEFDFSDYVKRKDPDALLKHVKHM 75 (179)
T ss_dssp EEEEEEECBTTCC-----HHHHHHHHHHHHHHHHHT--TTSSEEEEEEEESSS-EEEEECHHHHHHHCCHHHHHTTCCCC
T ss_pred cEEEEEeCCCCCC-----HHHHHHHHHHHHHHHHHh--CCCCeEEEEEEECCc-eeEEEcCcccCCHHHHHHHHHhcccC
Confidence 5899999999996 468999999999999985 234468999999977 68888888522 12444455553 3
Q ss_pred CCcccHHHHHHHHHHH-hccc--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 82 GGEMNIAAGIQVAQLA-LKHR--QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lA-LKhr--~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
+|.+++..||+.|... +... ..+..++.||+|.++..+.+.. + ++..+|.|++||+|...
T Consensus 76 ~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~-~------~~~~~i~i~~igvG~~~ 138 (179)
T 1mjn_A 76 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGN-I------DAAKDIIRYIIGIGKHF 138 (179)
T ss_dssp CBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSC-C------GGGTTSEEEEEEESGGG
T ss_pred CCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcc-h------HHHCCCEEEEEEccccc
Confidence 6899999999999854 4321 1235677888888887654322 1 26789999999999866
No 27
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.11 E-value=9.6e-11 Score=131.86 Aligned_cols=160 Identities=13% Similarity=0.137 Sum_probs=125.9
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCC--CHHHHHHhhccc-cc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT--DLGKILACMHEL-DI 81 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~--D~~kils~L~~l-~~ 81 (405)
.++|+||.|.||. +.+|+..++++..|+..+. .+..+||||++++. +.+..++|. +...+..++..+ ..
T Consensus 132 DIvfvlD~SgSm~-----~~~f~~~k~fv~~lv~~~~--~~~~rVglV~Fs~~-~~~~~~lt~~~~~~~l~~ai~~i~~~ 203 (1095)
T 3k6s_A 132 DIVFLIDGSGSIS-----SRNFATMMNFVRAVISQFQ--RPSTQFSLMQFSNK-FQTHFTFEEFRRSSNPLSLLASVHQL 203 (1095)
T ss_dssp EEEEEEECCTTSC-----SHHHHHHHHHHHHHHHSSC--SSSEEEEEEEESSS-EEEEECSHHHHSCSCGGGGTTTCCCC
T ss_pred cEEEEEcCCCCCC-----hhHHHHHHHHHHHHHHhcc--ccccEEEEEEECCe-EEEEecCcccCCHHHHHHHHhhhhcc
Confidence 4799999999995 6899999999999999754 34589999999987 799999985 666778888887 56
Q ss_pred CCcccHHHHHHHHHHHhccc---CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC--CcHHHHH
Q 015543 82 GGEMNIAAGIQVAQLALKHR---QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDD--GKPEKLE 156 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr---~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~--~n~~~L~ 156 (405)
+|.+++..||+.|...|.+. ..+..++.||||.++..+.|+..+...++.+++.+|.|++||+|.... .+.+.|+
T Consensus 204 gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~ 283 (1095)
T 3k6s_A 204 QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELN 283 (1095)
T ss_dssp CSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHH
T ss_pred cCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCchhHHHHHHHHHHCCCEEEEEecccccccccCHHHHH
Confidence 88999999999997765421 124566888889899877778889999999999999999999998610 1445666
Q ss_pred HHHHHHcCCCCcEEEEecC
Q 015543 157 ALLAAVNNNDSSHLVHVPT 175 (405)
Q Consensus 157 ~f~~~vn~~d~Shlv~vp~ 175 (405)
.++.. .++.|+..+..
T Consensus 284 ~IAs~---p~g~~vf~v~d 299 (1095)
T 3k6s_A 284 DIASK---PSQEHIFKVED 299 (1095)
T ss_dssp TTSCS---STTTSCCCBSC
T ss_pred HHHcC---CCCceEEEcCC
Confidence 66542 23447776654
No 28
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=98.77 E-value=1.6e-08 Score=105.45 Aligned_cols=129 Identities=15% Similarity=0.159 Sum_probs=88.9
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHH--HHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCC--HHHHHHhhcccc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADA--VSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTD--LGKILACMHELD 80 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dA--v~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D--~~kils~L~~l~ 80 (405)
.++||||.|.||..+|.. +|+.+ +++ +-.|+. ..+...||||+|++. .+.+++|.+ ...++..|..+
T Consensus 370 ~v~lvvD~SgSM~~~~~~-~~l~~-~~~Aa~l~~~~----~~~~d~vglv~Fs~~--~~~~~~t~~~~l~~~l~~l~~~- 440 (538)
T 1yvr_A 370 RFLLAIDVSASMNQRVLG-SILNA-SVVAAAMCMLV----ARTEKDSHMVAFSDE--MLPCPITVNMLLHEVVEKMSDI- 440 (538)
T ss_dssp CEEEEEECSGGGGSBSTT-SSCBH-HHHHHHHHHHH----HHHCSSEEEEEESSS--EECCSCCTTSCHHHHHHHHTTC-
T ss_pred eEEEEEECccccCCCCCC-CcHHH-HHHHHHHHHHH----hccCCceEEEEECCC--ceEcCCCCcccHHHHHHHHhcC-
Confidence 588999999999998876 56766 443 333333 346778999999973 445566654 34444455544
Q ss_pred cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhC-C--ceEEEEEeCCCC
Q 015543 81 IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKN-S--VAIDIVNFGEDD 148 (405)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKkn-n--I~VdII~FG~e~ 148 (405)
++|++++..+|..|... +....+||||+++..+.+..++...++++++. | |++.+||||...
T Consensus 441 ~~GgT~i~~aL~~a~~~------~~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~~~~v~l~~igig~~~ 505 (538)
T 1yvr_A 441 TMGSTDCALPMLWAQKT------NTAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTSNG 505 (538)
T ss_dssp CCSCCCTTHHHHHHHHT------TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEECSSSS
T ss_pred CCCCCcHHHHHHHHHhc------cCCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEEecCCC
Confidence 68999999999988543 23457899999887655444455666666543 5 555999999854
No 29
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=98.61 E-value=9.8e-08 Score=105.67 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=84.1
Q ss_pred eEEEEEeCChhhcCCCCC-CcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCc-----eE-----------------
Q 015543 5 ATMICIDNSEWMRNGDYS-PSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGV-----RV----------------- 61 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~-PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~-----~v----------------- 61 (405)
.+|||||.|.||...++. .+||...++|++.|+.. +..+|..+||||+|++... .|
T Consensus 226 DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~-L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n~~~~ 304 (893)
T 2ww8_A 226 DVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDK-ITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLNDSLF 304 (893)
T ss_dssp EEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHH-HHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEECCCTT
T ss_pred cEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHH-hhcCCCcEEEEEEecCccccccccccccccccccccccccccc
Confidence 489999999999986543 35999999999999964 4458999999999997531 11
Q ss_pred ----------------EECCCCCHHHH---HHhhcc----------cccCCcccHHHHHHHHHHHhcccCCCCCCeEEEE
Q 015543 62 ----------------LTTPTTDLGKI---LACMHE----------LDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIV 112 (405)
Q Consensus 62 ----------------LvtlT~D~~ki---ls~L~~----------l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVv 112 (405)
.+++|.|...+ ...|.. +.++|++++..||..|...|+.+..+..++.|||
T Consensus 305 w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~~kvIIL 384 (893)
T 2ww8_A 305 WNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQKVIFH 384 (893)
T ss_dssp SCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSSEEEEEE
T ss_pred cccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCCCeEEEE
Confidence 13567777444 466764 3458899999999999999975323356677777
Q ss_pred EecCCC
Q 015543 113 FAGSPV 118 (405)
Q Consensus 113 FvgSpi 118 (405)
+.++.-
T Consensus 385 LTDG~p 390 (893)
T 2ww8_A 385 ITDGVP 390 (893)
T ss_dssp EESSCC
T ss_pred EcCCCC
Confidence 776644
No 30
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=98.43 E-value=1.8e-06 Score=90.20 Aligned_cols=129 Identities=12% Similarity=0.103 Sum_probs=84.9
Q ss_pred eEEEEEeCChhhcCCCC----CCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccc
Q 015543 5 ATMICIDNSEWMRNGDY----SPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELD 80 (405)
Q Consensus 5 a~~IvIDnSesMrngD~----~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~ 80 (405)
.++||||.|.||..+.. +++++++....+ |+.. . ....|||++|++. . ..+++|.+ ..++..|..+.
T Consensus 364 ~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la--~~~~--r--~~d~v~lv~Fs~~-~-~~~~~~~~-~~l~~~l~~l~ 434 (535)
T 2nvo_A 364 RHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMS--LIAL--R--TEPDALTMGFAEQ-F-RPLGITPR-DTLESAMQKAQ 434 (535)
T ss_dssp EEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHH--HHHH--H--HSSEEEEEEEBSS-E-EECCCCTT-CCHHHHHHHTC
T ss_pred eEEEEEECCccccCCCCCCCCcccHHHHHHHHH--HHHc--C--cCCceEEEEECCc-c-eEcCCCcc-hhHHHHHHHHh
Confidence 47899999999987332 366776554322 3322 1 3448999999984 2 23455544 33444444442
Q ss_pred --cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhC---CceEEEEEeCCCC
Q 015543 81 --IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKN---SVAIDIVNFGEDD 148 (405)
Q Consensus 81 --~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKkn---nI~VdII~FG~e~ 148 (405)
++|++++..+|..|. ++ +....+||||+++.......++.+.++++++. +++|.+|++|...
T Consensus 435 ~~~~ggTdi~~~l~~a~---~~---~~~~~~vIliTD~~~~~g~~~~~~al~~~r~~~~~~~klv~i~l~~~~ 501 (535)
T 2nvo_A 435 SVSFGGTDCAQPILWAA---QE---RLDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLIVVGLTATE 501 (535)
T ss_dssp CSSBCCCCTTHHHHHHH---HT---TCCCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEEETTCSC
T ss_pred hCCCCCccHHHHHHHHH---Hh---cCCCCEEEEEeCCCccCCCCCHHHHHHHHHHhhCCCCeEEEEeccCCC
Confidence 378999999987663 22 23568899999887765444566677777765 8999999999754
No 31
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=98.43 E-value=1.3e-06 Score=95.24 Aligned_cols=147 Identities=17% Similarity=0.189 Sum_probs=106.4
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEEC--------------------
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTT-------------------- 64 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvt-------------------- 64 (405)
..++|||.|.+.. ++++.++++..++.. ..|...|||||+.+. +.+.--
T Consensus 134 ~~vFvIDvS~~a~-------~l~~l~~si~~~L~~---Lp~~~~VGlITf~~~-v~~y~l~~~~~~~~~vf~G~k~~~~~ 202 (769)
T 2nut_A 134 IFLYVVDTCMEDE-------DLQALKESMQMSLSL---LPPTALVGLITFGRM-VQVHELGCEGISKSYVFRGTKDLSAK 202 (769)
T ss_dssp EEEEEEECCSCHH-------HHHHHHHHHHHHHTT---SCTTCEEEEEEESSE-EEEEESSCCSSCEEEEEETTSCCCSH
T ss_pred EEEEEEECCccHH-------HHHHHHHHHHHHHHh---CCCCceEEEEEeCCE-EEEEeCCCCCCccceeecCCccccHH
Confidence 5789999998744 689999999888875 678889999999854 344110
Q ss_pred -------CC-----------CC----------------HHHHHHhhccccc---------CCcccHHHHHHHHHHHhccc
Q 015543 65 -------PT-----------TD----------------LGKILACMHELDI---------GGEMNIAAGIQVAQLALKHR 101 (405)
Q Consensus 65 -------lT-----------~D----------------~~kils~L~~l~~---------~G~~sL~~gL~iA~lALKhr 101 (405)
++ .+ ...|.+.|..|.. .....++.||++|..+|+..
T Consensus 203 q~~~ml~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~ 282 (769)
T 2nut_A 203 QLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECT 282 (769)
T ss_dssp HHHHHHC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhc
Confidence 00 11 1123334444433 45689999999999999964
Q ss_pred CCCCCCeEEEEEecCCCCCChhH------------------------------HHHHHHHHHhCCceEEEEEeCCCCCCc
Q 015543 102 QNKNQRQRIIVFAGSPVKYDRKV------------------------------MEMIGKKLKKNSVAIDIVNFGEDDDGK 151 (405)
Q Consensus 102 ~~k~~~~RIVvFvgSpi~~d~~~------------------------------l~~~akkLKknnI~VdII~FG~e~~~n 151 (405)
.++...||++|++++-+..++. -.++|+++.+++|.||+..|+..- -.
T Consensus 283 -~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~-vd 360 (769)
T 2nut_A 283 -FPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQ-TG 360 (769)
T ss_dssp -SCSSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSC-CC
T ss_pred -ccCCCcEEEEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCc-cC
Confidence 2357899999999876532221 235899999999999999999876 56
Q ss_pred HHHHHHHHHHHcC
Q 015543 152 PEKLEALLAAVNN 164 (405)
Q Consensus 152 ~~~L~~f~~~vn~ 164 (405)
..-|+.+++.++|
T Consensus 361 la~l~~l~~~TGG 373 (769)
T 2nut_A 361 LLEMKCCPNLTGG 373 (769)
T ss_dssp HHHHTHHHHHSSC
T ss_pred hHHHHHHhhcCCc
Confidence 7889999987743
No 32
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.39 E-value=6.7e-07 Score=85.56 Aligned_cols=88 Identities=22% Similarity=0.280 Sum_probs=76.1
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCC--ceEEE-CCCCCHHHHHHhhccccc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG--VRVLT-TPTTDLGKILACMHELDI 81 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~--~~vLv-tlT~D~~kils~L~~l~~ 81 (405)
.|+|+||.|.||. .||.+.+.++..++..+......++||||+|+++. +.+++ ++|.+. .+...|..+..
T Consensus 136 ~vvfLVDtSgSM~------~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~-~~~~~l~~L~a 208 (242)
T 3rag_A 136 HLVVCLDTSASMR------DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV-NVAALEAELVA 208 (242)
T ss_dssp EEEEEEECSGGGT------TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC-CHHHHHHHCCC
T ss_pred CEEEEEECcccHH------HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH-HHHHHHhhCCC
Confidence 5899999999996 27999999999999986656679999999999974 45554 999988 77778888899
Q ss_pred CCcccHHHHHHHHHHHhc
Q 015543 82 GGEMNIAAGIQVAQLALK 99 (405)
Q Consensus 82 ~G~~sL~~gL~iA~lALK 99 (405)
+|.+.+..||..|...|+
T Consensus 209 gG~Tplg~AL~~A~~~~~ 226 (242)
T 3rag_A 209 RGGTPTGPAIDHAADLLL 226 (242)
T ss_dssp CSCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 999999999999988774
No 33
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=98.13 E-value=2.1e-05 Score=86.28 Aligned_cols=148 Identities=12% Similarity=0.108 Sum_probs=102.3
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEE---------------------
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLT--------------------- 63 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLv--------------------- 63 (405)
..++|||.|..+.+.. .+++.++++...+...-..+|...|||||+... +.+.-
T Consensus 189 ~yvFvIDvs~~av~~g----~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~-V~~~~l~~~~~g~k~~~~q~~mlvv~ 263 (810)
T 1pcx_A 189 TYCFLIDVSQSSIKSG----LLATTINTLLQNLDSIPNHDERTRISILCVDNA-IHYFKIPLDSENNEESADQINMMDIA 263 (810)
T ss_dssp EEEEEEECSHHHHHHT----HHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSS-EEEEECCCGGGC-------CEEECCC
T ss_pred EEEEEEECChHHHhhh----HHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE-EEEEecCccccCccccccchhhcccc
Confidence 5799999998874211 466777777776654323344689999999754 34431
Q ss_pred ---------------CCCCCHHHHHHhhcccc------cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCCh
Q 015543 64 ---------------TPTTDLGKILACMHELD------IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDR 122 (405)
Q Consensus 64 ---------------tlT~D~~kils~L~~l~------~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~ 122 (405)
++......|.+.|..|. -.+...++.||++|..+|++ ...||++|++|+-+..+
T Consensus 264 dl~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~-----~GGrI~~F~sg~pt~Gp 338 (810)
T 1pcx_A 264 DLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG-----VGGKIIVVSGTLPNLGI 338 (810)
T ss_dssp CTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTT-----TCEEEEEEESSCCCSST
T ss_pred ccccccCCCcccccccHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHh-----cCCEEEEEecCCCCCCC
Confidence 11122223333344432 25678999999999999986 45799999998754322
Q ss_pred h--------------------------HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 123 K--------------------------VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 123 ~--------------------------~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
+ --.++|+++.+++|.||+..++..- -...-|..+++.++
T Consensus 339 G~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~-~dla~l~~l~~~TG 404 (810)
T 1pcx_A 339 GKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDY-MDVASLSNLSRFTA 404 (810)
T ss_dssp TCCCC--------------------CCHHHHHHHHHHHTTEEEEEEEEESSC-CCHHHHHHHHHTTT
T ss_pred CcccccccccccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCc-cChHHHHHHHhcCC
Confidence 2 1257899999999999999999876 56778899988664
No 34
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=98.10 E-value=7.2e-05 Score=70.15 Aligned_cols=166 Identities=11% Similarity=0.121 Sum_probs=110.3
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCc
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGE 84 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLvtlT~D~~kils~L~~l~~~G~ 84 (405)
.+++|+|.|.||.+- ++..++.+..++...-..+...++|++++.+++.....++|.|...+.+.+.++.+.|+
T Consensus 5 Dl~fl~D~S~SM~~d------i~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~~~l~lT~d~~~F~~~v~~~~vsg~ 78 (212)
T 2iue_A 5 DLYFLMGLSGSAQGH------LSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQHILKLTADSSQFQRELRKQLVSGK 78 (212)
T ss_dssp EEEEEEECCGGGTTT------HHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEEEEEEEESCHHHHHHHHHTCCCCCC
T ss_pred EEEEEEeCCCcchhH------HHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcceecCCcCCCHHHHHHHHhhccccCC
Confidence 479999999999865 77777788888877655567799999999999888889999999999999999988774
Q ss_pred ccH----HHHHHHHHHHhcccCCCCCCeEEEEEe-cCCCC-C-Ch----------------------------hHHHHHH
Q 015543 85 MNI----AAGIQVAQLALKHRQNKNQRQRIIVFA-GSPVK-Y-DR----------------------------KVMEMIG 129 (405)
Q Consensus 85 ~sL----~~gL~iA~lALKhr~~k~~~~RIVvFv-gSpi~-~-d~----------------------------~~l~~~a 129 (405)
-.. ..||..|...-....-++ ..|+|||+ +.+.. . |. -.+.++.
T Consensus 79 ~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~chl~~g~y~~s~~~Dyps~~q~~ 157 (212)
T 2iue_A 79 LATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLA 157 (212)
T ss_dssp SSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSSBBGGGGSSCCCCHHHHH
T ss_pred CCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCccccCCccccccccCCccccccCCCeeccCcccCCCCHHHHH
Confidence 332 334444432212111233 66777776 33321 1 11 3667899
Q ss_pred HHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCCchhhhhh
Q 015543 130 KKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVL 184 (405)
Q Consensus 130 kkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~~lLsD~l 184 (405)
++|+++||.+...-= . ......+.|.+.+ .++....+......+.+.|
T Consensus 158 ~~l~~~~i~~ifavt---~-~~~~~Y~~l~~~i---~~s~v~~L~~dSsni~~li 205 (212)
T 2iue_A 158 SKLAENNIQPIFVVP---S-RMVKTYEKLTTFI---PKLTIGELSDDSSNVAQLI 205 (212)
T ss_dssp HHHHHHTCEEEEEEE---H-HHHHHHHHHHHHS---TTCEEEEESSCCHHHHHHH
T ss_pred HHHHhcCCcEEEEEc---c-chhHHHHHHHHHc---ccceeeeecCCcHHHHHHH
Confidence 999999987543321 1 2234677777766 3566666655433333333
No 35
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=98.02 E-value=3.2e-05 Score=84.33 Aligned_cols=147 Identities=18% Similarity=0.203 Sum_probs=104.3
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEEE---------------------
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLT--------------------- 63 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vLv--------------------- 63 (405)
..++|||.|.... .+++.++++...+.. .+|...|||||+... +.+.-
T Consensus 123 ~~vFvIDvs~~~~-------~l~~l~~sl~~~L~~---Lp~~~~VGlITf~~~-V~~y~l~~~~~~~~~V~~g~k~~~~~ 191 (768)
T 1m2o_A 123 IFFFVVDLTSETE-------NLDSLKESIITSLSL---LPPNALIGLITYGNV-VQLHDLSSETIDRCNVFRGDREYQLE 191 (768)
T ss_dssp EEEEEEECCSCHH-------HHHHHHHHHHHHHHT---SCTTCEEEEEEESSE-EEECCCSSSSSEEEEEEETTSCCCHH
T ss_pred EEEEEEECCcCHH-------HHHHHHHHHHHHHHh---CCCCCEEEEEEECCE-EEEEECCCCCCcceeeecCCccccHH
Confidence 5689999998864 488888888888875 677889999999743 23311
Q ss_pred -------CCC------------CC-------------------HHHHHHhhccccc---------CCcccHHHHHHHHHH
Q 015543 64 -------TPT------------TD-------------------LGKILACMHELDI---------GGEMNIAAGIQVAQL 96 (405)
Q Consensus 64 -------tlT------------~D-------------------~~kils~L~~l~~---------~G~~sL~~gL~iA~l 96 (405)
.++ .+ ...|.+.|..|.. .....++.||++|..
T Consensus 192 q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ 271 (768)
T 1m2o_A 192 ALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASL 271 (768)
T ss_dssp HHHHHHHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHH
Confidence 000 00 0112333444432 345789999999999
Q ss_pred HhcccCCCCCCeEEEEEecCCCCCChh---------------H---------------HHHHHHHHHhCCceEEEEEeCC
Q 015543 97 ALKHRQNKNQRQRIIVFAGSPVKYDRK---------------V---------------MEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 97 ALKhr~~k~~~~RIVvFvgSpi~~d~~---------------~---------------l~~~akkLKknnI~VdII~FG~ 146 (405)
+|+.. .++..-||++|++|+-+..++ + -.++|+++.+++|.||+..++.
T Consensus 272 ll~~~-~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~ 350 (768)
T 1m2o_A 272 LLQGC-YKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCY 350 (768)
T ss_dssp HHHHH-CTTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred HHhhc-cCCCCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccC
Confidence 99964 235789999999987653221 1 1467899999999999999998
Q ss_pred CCCCcHHHHHHHHHHHcC
Q 015543 147 DDDGKPEKLEALLAAVNN 164 (405)
Q Consensus 147 e~~~n~~~L~~f~~~vn~ 164 (405)
.- -...-|..+++.++|
T Consensus 351 ~~-~dla~l~~l~~~TGG 367 (768)
T 1m2o_A 351 DQ-IGMSEMKQLTDSTGG 367 (768)
T ss_dssp SC-CSHHHHHHHHHHHTC
T ss_pred Cc-cChHHHhhHhhcCCc
Confidence 66 567889999998853
No 36
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=98.00 E-value=4.1e-05 Score=85.24 Aligned_cols=148 Identities=12% Similarity=0.108 Sum_probs=101.7
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCceEE----------------------
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVL---------------------- 62 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~~vL---------------------- 62 (405)
..++|||.|....+.. .+++.++++...+...-..+|...|||||+... +.+.
T Consensus 305 vyvFvIDvS~~av~~g----~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~-Vh~y~l~~~~~g~k~~~~q~qmlvvs 379 (926)
T 1m2v_B 305 TYCFLIDVSQSSIKSG----LLATTINTLLQNLDSIPNHDERTRISILCVDNA-IHYFKIPLDSENNEESADQINMMDIA 379 (926)
T ss_dssp BEEEEEECSHHHHHSC----HHHHHHHHHHHTTTTSCCTTSCCEECEEEESSS-EEEEECCCC---------CCEEEEEC
T ss_pred EEEEEEECCHHHHhhh----HHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE-EEEEecCCcccCCcccccchhhcccc
Confidence 4799999998864321 366666766666654222334688999999753 2332
Q ss_pred --------------ECCCCCHHHHHHhhcccc------cCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCCh
Q 015543 63 --------------TTPTTDLGKILACMHELD------IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDR 122 (405)
Q Consensus 63 --------------vtlT~D~~kils~L~~l~------~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~ 122 (405)
+++......|.+.|+.|. -.....++.||++|..+|++ ..-||++|++|+-+..+
T Consensus 380 dl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~-----~GGrI~~F~sg~Pt~Gp 454 (926)
T 1m2v_B 380 DLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG-----VGGKIIVVSGTLPNLGI 454 (926)
T ss_dssp CCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTT-----TCEEEEEEESSCCCSST
T ss_pred ccccccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHh-----hCCEEEEEecCCCCCCC
Confidence 122222334444444442 24678999999999999986 46799999998854222
Q ss_pred h--------------------------HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 123 K--------------------------VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 123 ~--------------------------~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
+ --.++|+++.+++|.|||..|+..- -...-|..+++.++
T Consensus 455 G~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~-vdla~l~~l~~~TG 520 (926)
T 1m2v_B 455 GKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDY-MDVASLSNLSRFTA 520 (926)
T ss_dssp TCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSC-CCHHHHHHHHHTTT
T ss_pred CcccccccccccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCC-cChHHHHHHHhcCC
Confidence 2 1257899999999999999999876 56778888988664
No 37
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=97.68 E-value=9.5e-06 Score=59.53 Aligned_cols=40 Identities=38% Similarity=0.542 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCcccCCCCCCChHHHHHHHHHccccCCCC
Q 015543 291 DEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTK 342 (405)
Q Consensus 291 ~~e~~~L~~Al~mS~~~~~~~~~~~~~~~~~~~~ee~~ia~A~~ms~~~~~~ 342 (405)
+++++.||+||++|.|+. +..+||..+.+||++|||....
T Consensus 4 dEDEedlqrALalSRQE~------------dmEDeeadLrrAiqLSmQGss~ 43 (52)
T 2klz_A 4 DEDEEDLQRALALSRQEI------------DMEDEEADLRRAIQLSMQGSSR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH------------CCSSSHHHHHHHHHHHHTTCCS
T ss_pred ccchHHHHHHHHHHHHHh------------ccchhHHHHHHHHHHHhhcccc
Confidence 456779999999999987 4567889999999999997643
No 38
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=97.60 E-value=0.00079 Score=73.52 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=102.1
Q ss_pred eEEEEEeCChhh-cCCCCCCcHHHHHHHHHHHHHHhhcc----CCcCCcEEEEEecCC-----------CceE-------
Q 015543 5 ATMICIDNSEWM-RNGDYSPSRLRAQADAVSLICGAKTQ----SNPENTVGILTMGGK-----------GVRV------- 61 (405)
Q Consensus 5 a~~IvIDnSesM-rngD~~PtRl~Aq~dAv~~fv~~k~~----~NPes~VGlvtmag~-----------~~~v------- 61 (405)
..++|||.|... ++|. +++.++++...+...-. ..|...|||||+... .++.
T Consensus 175 ~y~FvIDvs~~av~sg~-----l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~ 249 (766)
T 3eh2_A 175 AFIFMIDVSYNAIRTGL-----VRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVA 249 (766)
T ss_dssp EEEEEEECSHHHHHTTH-----HHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred EEEEEEECchhhccchH-----HHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChh
Confidence 457899999763 3343 66777777777764211 012378999999743 1211
Q ss_pred ----------EECCCCCHHHHHHhhccc------ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecC-CCCCCh--
Q 015543 62 ----------LTTPTTDLGKILACMHEL------DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGS-PVKYDR-- 122 (405)
Q Consensus 62 ----------LvtlT~D~~kils~L~~l------~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgS-pi~~d~-- 122 (405)
|+++......|-+.|..| ....++.++.+|+.|.++|++. +...||++|++| |.+..+
T Consensus 250 d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~---~~GGkI~~F~s~lP~t~GpG~ 326 (766)
T 3eh2_A 250 DMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAA---ECAGKLFLFHTSLPIAEAPGK 326 (766)
T ss_dssp TCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHT---TCCEEEEEEECSCCCSSSTTC
T ss_pred hhccccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccC---CCCcEEEEEecCCCCcCCCcc
Confidence 223333334444444444 3345678999999999999973 468999999988 763222
Q ss_pred -----------------------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 015543 123 -----------------------KVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (405)
Q Consensus 123 -----------------------~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~ 164 (405)
+--.++|+++.+++|.||+..|+..- -...-|..+++.++|
T Consensus 327 l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~-vdlatl~~l~~~TGG 390 (766)
T 3eh2_A 327 LKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQY-VDVATLSVVPQLTGG 390 (766)
T ss_dssp CCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSC-CCHHHHTHHHHHTTC
T ss_pred cccccccccCCCcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecCCC-cChHHHHHHHhhcCc
Confidence 12268999999999999999999866 567788888887754
No 39
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=97.54 E-value=0.0013 Score=71.62 Aligned_cols=148 Identities=11% Similarity=0.113 Sum_probs=96.9
Q ss_pred eEEEEEeCChhhc-CCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCC-----------ceEE----------
Q 015543 5 ATMICIDNSEWMR-NGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG-----------VRVL---------- 62 (405)
Q Consensus 5 a~~IvIDnSesMr-ngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~-----------~~vL---------- 62 (405)
+.++|||.|.... +| =+++.++++...+.. .-.++...|||||+.... ++.+
T Consensus 162 ~yvFvIDvs~~a~~~g-----~l~~~~~sl~~~L~~-lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~ 235 (751)
T 3eh1_A 162 VYLFVLDVSHNAVEAG-----YLTILCQSLLENLDK-LPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFL 235 (751)
T ss_dssp EEEEEEECSHHHHHHT-----HHHHHHHHHHHHTTT-SSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTS
T ss_pred EEEEEEEccHhhhhhh-----HHHHHHHHHHHHHHh-cCCCcCcEEEEEEeCCEEEEEECCCCcccceeeccccccccCC
Confidence 4688999996533 33 244555666555542 222334479999997531 1222
Q ss_pred -------ECCCCCHHHHHHhhcccc---c---CCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhH-----
Q 015543 63 -------TTPTTDLGKILACMHELD---I---GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKV----- 124 (405)
Q Consensus 63 -------vtlT~D~~kils~L~~l~---~---~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~----- 124 (405)
+++......|-+.|..|. . .-...++.||++|..+|++ ...||++|++|+-+..++.
T Consensus 236 P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~-----~GGrI~~F~sg~pt~GpG~l~~r~ 310 (751)
T 3eh1_A 236 PTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSP-----TGGRVSVFQTQLPSLGAGLLQSRE 310 (751)
T ss_dssp CCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTT-----TCEEEEEEECSCCCSSTTCCCCCC
T ss_pred CChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhc-----CCCEEEEEecCCCCCCCCcccccc
Confidence 222233333433444441 1 2357899999999999985 5789999998876533331
Q ss_pred --------------------HHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 015543 125 --------------------MEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (405)
Q Consensus 125 --------------------l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~ 164 (405)
-.++|+++.+++|.||+..|+..- -...-|..+++.++|
T Consensus 311 ~~~~~~~~ke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~-~dlatl~~l~~~TGG 369 (751)
T 3eh1_A 311 DPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQY-SDLASLACMSKYSAG 369 (751)
T ss_dssp CSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSC-CCHHHHTHHHHTTTC
T ss_pred ccccCCCchhhhhhcchHHHHHHHHHHHHhcCceEEEEEccCcc-cChHhHHHHHhhcCc
Confidence 367899999999999999998766 567777888876643
No 40
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=97.51 E-value=0.00071 Score=73.89 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=100.7
Q ss_pred eEEEEEeCChhh-cCCCCCCcHHHHHHHHHHHHHHhhcc----CCcCCcEEEEEecCCC-----------ceE-------
Q 015543 5 ATMICIDNSEWM-RNGDYSPSRLRAQADAVSLICGAKTQ----SNPENTVGILTMGGKG-----------VRV------- 61 (405)
Q Consensus 5 a~~IvIDnSesM-rngD~~PtRl~Aq~dAv~~fv~~k~~----~NPes~VGlvtmag~~-----------~~v------- 61 (405)
+.++|||.|... ++|. +++.++++...+...=. ..+...|||||+.... +..
T Consensus 179 ~y~FvIDvs~~av~sg~-----l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~ 253 (770)
T 3efo_B 179 AFIFMIDVSYSNIKNGL-----VKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVG 253 (770)
T ss_dssp EEEEEEECSHHHHHTTH-----HHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred EEEEEEEcchhhccchH-----HHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEecccc
Confidence 567899999764 4443 67777777777764211 0123689999997431 111
Q ss_pred ----------EECCCCCHHHHHHhhccc------ccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecC-CCCCChh-
Q 015543 62 ----------LTTPTTDLGKILACMHEL------DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGS-PVKYDRK- 123 (405)
Q Consensus 62 ----------LvtlT~D~~kils~L~~l------~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgS-pi~~d~~- 123 (405)
|+++......|-+.|..| ....++.++.+|+.|.++|++. +...||++|++| |.+..++
T Consensus 254 d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~---~~GGkI~~F~s~lP~t~GpG~ 330 (770)
T 3efo_B 254 EVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAA---DCPGKLFIFHSSLPTAEAPGK 330 (770)
T ss_dssp SCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHH---TCCEEEEEEECSCCCSSSTTC
T ss_pred cccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccC---CCCcEEEEEecCCCCcCCCcc
Confidence 122222333333334433 2245678999999999999863 367899999988 6632222
Q ss_pred ------------------------HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 015543 124 ------------------------VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (405)
Q Consensus 124 ------------------------~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~ 164 (405)
--.++|+++.+++|.||+..|+..- -...-|..+++.++|
T Consensus 331 l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~-vdlatl~~l~~~TGG 394 (770)
T 3efo_B 331 LKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQY-VDVASLGLVPQLTGG 394 (770)
T ss_dssp CCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSC-CCHHHHTHHHHHTTC
T ss_pred ccccccccccCCcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCc-cChHHHHHHHhhcCc
Confidence 1256899999999999999999866 567788888887753
No 41
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=97.23 E-value=0.0035 Score=67.78 Aligned_cols=159 Identities=10% Similarity=0.109 Sum_probs=98.7
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCC--------------------------
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG-------------------------- 58 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~-------------------------- 58 (405)
.+++++|.|.||.+ =|+-.+.....|+.+.-..-...++|+.+|.++.
T Consensus 113 Dly~LmD~S~SM~d------di~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c~~ 186 (690)
T 3fcs_B 113 DIYYLMDLSYSMKD------DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLP 186 (690)
T ss_dssp EEEEEEECSGGGHH------HHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCCCC
T ss_pred cEEEEecCCcchHH------HHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhhhccCCCcCCCCCCCC
Confidence 47999999999973 1222333334444443333445799999999843
Q ss_pred ---ceEEECCCCCHHHHHHhhcccccCCcccH----HHHHHHHHHHhcccCCCCCCeEEEEEe-cCCCCC--Ch------
Q 015543 59 ---VRVLTTPTTDLGKILACMHELDIGGEMNI----AAGIQVAQLALKHRQNKNQRQRIIVFA-GSPVKY--DR------ 122 (405)
Q Consensus 59 ---~~vLvtlT~D~~kils~L~~l~~~G~~sL----~~gL~iA~lALKhr~~k~~~~RIVvFv-gSpi~~--d~------ 122 (405)
.+-..+||.|..++.+.++++.+.|+.+. ..||..|..-.+...-+....|||||+ +.+... |.
T Consensus 187 ~f~f~~~l~lt~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~agDg~l~gi~ 266 (690)
T 3fcs_B 187 MFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIV 266 (690)
T ss_dssp CCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCC
T ss_pred CccceeecccCCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCccccCCCcccccee
Confidence 12346899999999999999988876433 334444432123222233466676665 444221 11
Q ss_pred -----------------------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 123 -----------------------KVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 123 -----------------------~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
-.+-.+.++|+++||.+.+..... .....+.|.+.+. ++.+.++-..
T Consensus 267 ~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~i~~ifavt~~----~~~~y~~l~~~i~---~s~v~~l~~d 336 (690)
T 3fcs_B 267 QPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTEN----VVNLYQNYSELIP---GTTVGVLSMD 336 (690)
T ss_dssp SCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEEEEEGG----GHHHHHHHHHHST---TCEEEEECTT
T ss_pred cCCCcceeecCCCccccccccCCCCHHHHHHHHHHcCCeEEEEEeCC----chhhHHHHHhhcC---Cceeeeeccc
Confidence 137899999999999776666543 3457788877663 4555555544
No 42
>1p9c_A 26S proteasome non-ATPase regulatory subunit 4; alpha helix, hairpin loop, ligand binding protein; NMR {Homo sapiens} SCOP: j.105.1.1 PDB: 1p9d_S 1uel_B
Probab=96.84 E-value=0.00038 Score=50.45 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.4
Q ss_pred CCCChHHHHHHHHHccccCCC
Q 015543 321 KATDEDKELALALQMSMQDDT 341 (405)
Q Consensus 321 ~~~~ee~~ia~A~~ms~~~~~ 341 (405)
..|+||++|++|||||||+.+
T Consensus 17 ~~mteeeqla~ALqMSmq~~~ 37 (45)
T 1p9c_A 17 SSMTEEEQIAYAMQMSLQGAE 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHTSSSS
T ss_pred hccCchHHHHHHHHhcccccc
Confidence 478999999999999999764
No 43
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=96.82 E-value=0.0022 Score=69.34 Aligned_cols=157 Identities=16% Similarity=0.169 Sum_probs=96.7
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCC--------------------------
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG-------------------------- 58 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~-------------------------- 58 (405)
.+++++|.|.||.+- |+-.+.....|+.+.-..-...++|+.+|.++.
T Consensus 106 Dly~LmD~S~SM~dd------i~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c~~~ 179 (687)
T 3k6s_B 106 DLYYLMDLSYSMLDD------LRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPP 179 (687)
T ss_dssp EEEEEEECSSTTHHH------HHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCCCCC
T ss_pred eEEEEEcCCcchHHH------HHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchhccCCCCCCCCCcCCc
Confidence 479999999999631 222233334444444445567899999999842
Q ss_pred --ceEEECCCCCHHHHHHhhcccccCCcccHHHH-HHHHHHHh---cccCCCCCCeEEEEEe-cCCCCC--Ch-------
Q 015543 59 --VRVLTTPTTDLGKILACMHELDIGGEMNIAAG-IQVAQLAL---KHRQNKNQRQRIIVFA-GSPVKY--DR------- 122 (405)
Q Consensus 59 --~~vLvtlT~D~~kils~L~~l~~~G~~sL~~g-L~iA~lAL---Khr~~k~~~~RIVvFv-gSpi~~--d~------- 122 (405)
.+-..+||.|..++.+.++++.+.|+.+.-.| +.-.+.|+ +...-+. ..|||||+ +.+... |.
T Consensus 180 f~f~~~l~lt~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~-a~rllV~~TDa~~H~agDg~l~gi~~ 258 (687)
T 3k6s_B 180 FAFRHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRN-VTRLLVFATDDGFHFAGDGKLGAILT 258 (687)
T ss_dssp CSCEEEEEEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCS-SCCEEEEECSSCCCCTTGGGGGTCCC
T ss_pred ccceeecccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCcc-ceEEEEEECCCccccCCCccccceec
Confidence 23356799999999999999988886443332 22222333 2222233 56666665 344221 11
Q ss_pred ---------------------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecC
Q 015543 123 ---------------------KVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPT 175 (405)
Q Consensus 123 ---------------------~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~ 175 (405)
-.+-.+.++|+++||.+.+..... .....+.|.+.+.+ +.+.++-.
T Consensus 259 pndg~Chl~~~~y~~s~~~DyPS~~ql~~~l~~~~I~~ifavt~~----~~~~y~~l~~~i~~---s~v~~L~~ 325 (687)
T 3k6s_B 259 PNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSR----MVKTYEKLTEIIPK---SAVGELSE 325 (687)
T ss_dssp CCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEEECGG----GHHHHHHHHHHSSS---CCEEECCT
T ss_pred CCCCccccCCCccccccccCCCCHHHHHHHHHHcCCeEEEEEecc----chhhHHHHHhhcCC---ceeeeecc
Confidence 126789999999999776666543 34678888877643 44444443
No 44
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=96.76 E-value=0.0035 Score=59.93 Aligned_cols=73 Identities=7% Similarity=0.105 Sum_probs=54.0
Q ss_pred CCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC---CcHHHHHHHHHHHcCCCCcEEEEecCCCchhh
Q 015543 105 NQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDD---GKPEKLEALLAAVNNNDSSHLVHVPTGPNALS 181 (405)
Q Consensus 105 ~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~---~n~~~L~~f~~~vn~~d~Shlv~vp~g~~lLs 181 (405)
...+.|||++++..++.. ++...|+.+++.||+|++||||.... ...+.|+.+++.+ +|.||.. ... -|+
T Consensus 8 ~~~k~iillTDG~~~~g~-~p~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~t---GG~yf~a-~~~--~l~ 80 (242)
T 3rag_A 8 ATIRQILVITDGCSNIGP-DPVEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAG---GGMCRIV-QPA--DIS 80 (242)
T ss_dssp CCEEEEEEEESSCCCSSS-CHHHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHT---TSCEEEE-CGG--GHH
T ss_pred CCccEEEEEccCCCCCCC-CHHHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhc---CCeEEEe-eHH--HHH
Confidence 467889999999877754 78999999999999999999975421 1236799998865 4566665 332 366
Q ss_pred hhh
Q 015543 182 DVL 184 (405)
Q Consensus 182 D~l 184 (405)
+.|
T Consensus 81 ~~~ 83 (242)
T 3rag_A 81 ATA 83 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 45
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=96.52 E-value=0.072 Score=55.08 Aligned_cols=158 Identities=13% Similarity=0.096 Sum_probs=102.0
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCC--------------------------
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG-------------------------- 58 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~-------------------------- 58 (405)
.+++++|.|.||.+ =++-.+.-...++.+.-+.-...++|+.+|.++-
T Consensus 124 DLyyLmDlS~SM~d------dl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c~~~f 197 (454)
T 3vi3_B 124 DLYYLMDLSYSMKD------DLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTTPF 197 (454)
T ss_dssp EEEEEEECSGGGHH------HHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCCCCCC
T ss_pred eEEEEecCCcchhh------HHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHhcCCCcCccCCCCCc
Confidence 47899999999974 2334445556666666666678999999999862
Q ss_pred -ceEEECCCCCHHHHHHhhcccccCCcccHH----HHHHHHHHHhcccCCCCCCeEEEEEe-cCCCC--CC---------
Q 015543 59 -VRVLTTPTTDLGKILACMHELDIGGEMNIA----AGIQVAQLALKHRQNKNQRQRIIVFA-GSPVK--YD--------- 121 (405)
Q Consensus 59 -~~vLvtlT~D~~kils~L~~l~~~G~~sL~----~gL~iA~lALKhr~~k~~~~RIVvFv-gSpi~--~d--------- 121 (405)
.+-+.+||.|..++...+.++.+.|+.+.. .||..|..--+...-++ ..|||||+ +.+.. .|
T Consensus 198 ~fr~~l~LT~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~-a~rllV~~TDa~fH~agDgkL~GIv~P 276 (454)
T 3vi3_B 198 SYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRN-VTRLLVFSTDAGFHFAGDGKLGGIVLP 276 (454)
T ss_dssp SEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEEESSCBCCTTTTGGGTCCSC
T ss_pred ceeeeeecCCCHHHHHHHHhhccccCCCcCCchhHHHHHHHhccccccCCcc-ceEEEEEECCCCcCcCCCccccceecC
Confidence 123678999999999999999988874433 33333332212222334 77787776 33221 11
Q ss_pred -------------------hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 122 -------------------RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 122 -------------------~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
=-.+-.+.++|.++||.+-.--- . ......+.|.+-+. +|.+.++...
T Consensus 277 NDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e~nI~~IFAVt---~-~~~~~Y~~L~~~ip---~s~vg~Ls~d 343 (454)
T 3vi3_B 277 NDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENNIQTIFAVT---E-EFQPVYKELKNLIP---KSAVGTLSAN 343 (454)
T ss_dssp CCCCCCEETTEECCTTTSCCCCHHHHHHHHHHTTEEEEEEEE---G-GGHHHHHHHHHHST---TEEEEEECTT
T ss_pred CCCccEeCCCcccccccCCCCCHHHHHHHHHhcCCcEEEEEc---C-ccchHHHHHHHhCC---CceeeEcccc
Confidence 12488999999999996532221 2 23457788777663 4666666554
No 46
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=96.25 E-value=0.085 Score=54.80 Aligned_cols=159 Identities=11% Similarity=0.139 Sum_probs=100.7
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCCc-------------------------
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGV------------------------- 59 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~~------------------------- 59 (405)
.+++++|.|.||.+ =++-.+.....+..+.-..-...++|+.+|.++-+
T Consensus 113 DLy~LmDlS~SM~d------dl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~~c~p 186 (472)
T 3t3p_B 113 DIYYLMDLSYSMKD------DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLP 186 (472)
T ss_dssp EEEEEEECSGGGHH------HHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTSCCCC
T ss_pred eEEEEEccCcchHH------HHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhhhhcCCCcccccCCCC
Confidence 47899999999974 23344445566666655666788999999998621
Q ss_pred ----eEEECCCCCHHHHHHhhcccccCCcccHH----HHHHHHHHHhcccCCCCCCeEEEEEe-cCCCC-----------
Q 015543 60 ----RVLTTPTTDLGKILACMHELDIGGEMNIA----AGIQVAQLALKHRQNKNQRQRIIVFA-GSPVK----------- 119 (405)
Q Consensus 60 ----~vLvtlT~D~~kils~L~~l~~~G~~sL~----~gL~iA~lALKhr~~k~~~~RIVvFv-gSpi~----------- 119 (405)
+-..+||.|..++.+.++++.+.|+.+.. .||..|..--+...-+....|||||+ +.+..
T Consensus 187 ~f~fr~~l~LT~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~agDgkL~GIv 266 (472)
T 3t3p_B 187 MFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIV 266 (472)
T ss_dssp CCSEEEEEEEESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCC
T ss_pred CcceeEeeccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCCCcCcCCCcccccee
Confidence 12568899999999999999888874433 34443432112222233567777776 22211
Q ss_pred --------------------CChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 120 --------------------YDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 120 --------------------~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
.|--.+-.+.++|.++||.+-.- . .. ......+.|.+.+. ++.+.++...
T Consensus 267 ~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~nI~~IFA-V--t~-~~~~~Y~~L~~~ip---~s~vg~L~~d 336 (472)
T 3t3p_B 267 QPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFA-V--TE-NVVNLYQNYSELIP---GTTVGVLSMD 336 (472)
T ss_dssp CCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHTTCEEEEE-E--CG-GGHHHHHHHHHTST---TCEEEECCTT
T ss_pred cCCCCceEECCCCcccccccCCCCCHHHHHHHHHhcCccEEEE-E--ec-cchhHHHHHHHhCC---Cceeeecccc
Confidence 01114789999999999864322 2 22 34567788877553 4555555544
No 47
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=96.00 E-value=0.13 Score=53.69 Aligned_cols=158 Identities=13% Similarity=0.137 Sum_probs=101.5
Q ss_pred eEEEEEeCChhhcCCCCCCcHHHHHHHHHHHHHHhhccCCcCCcEEEEEecCCC--------------------------
Q 015543 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG-------------------------- 58 (405)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPes~VGlvtmag~~-------------------------- 58 (405)
.+++++|.|.||.+ =++-.+.....+..+.-......++|+.+|.++.
T Consensus 134 DLyyLmDlS~SM~d------dl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~c~p~ 207 (503)
T 3v4v_B 134 DLYYLMDLSYSMKD------DLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLERCQSP 207 (503)
T ss_dssp EEEEEEECSGGGHH------HHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHHHHCCSSCSSSCCCCC
T ss_pred eEEEEEecCcchhh------HHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHHhcCCCcCCCCCCCCC
Confidence 47999999999974 2444555566667666667778999999998862
Q ss_pred --ceEEECCCCCHHHHHHhhcccccCCcccHHH----HHHHHHHHhcccCCCCCCeEEEEEec-CCCC------------
Q 015543 59 --VRVLTTPTTDLGKILACMHELDIGGEMNIAA----GIQVAQLALKHRQNKNQRQRIIVFAG-SPVK------------ 119 (405)
Q Consensus 59 --~~vLvtlT~D~~kils~L~~l~~~G~~sL~~----gL~iA~lALKhr~~k~~~~RIVvFvg-Spi~------------ 119 (405)
.+-+.+||.|..++.+.+.++.+.|+.+... ||..|..--+...-+. ..|+|||+. .+..
T Consensus 208 f~fr~~l~LT~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~IgWR~-a~rllV~~TDA~fH~agDgkLaGIv~ 286 (503)
T 3v4v_B 208 FSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWRN-VSRLLVFTSDDTFHTAGDGKLGGIFM 286 (503)
T ss_dssp CSEEEEEEEESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEEESSCBCCTTGGGTTTCCS
T ss_pred cceEEEEEecCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhcccccCCCc-ceEEEEEECCCCcCcCCCccccceec
Confidence 1225689999999999999999888744433 3333332112222223 567888772 2211
Q ss_pred -------------------CChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 120 -------------------YDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 120 -------------------~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
.|--.+-.+.++|.++||.+- |.-.. ......+.|.+.+. ++.+.++...
T Consensus 287 pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~ennI~~I---FAVt~-~~~~~Y~~L~~~ip---~s~vg~Ls~d 355 (503)
T 3v4v_B 287 PSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAANIQPI---FAVTS-AALPVYQELSKLIP---KSAVGELSED 355 (503)
T ss_dssp CCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHTEEEE---EEECS-SSHHHHHHHHTTST---TCEEEECCTT
T ss_pred CCCCCeEECCCCccccccccCCCCHHHHHHHHHhcCCeEE---EEEcc-cchhHHHHHHHhCC---CceeeEcccc
Confidence 011147789999999999432 44333 34567888876653 4556666554
No 48
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=95.38 E-value=0.0089 Score=48.28 Aligned_cols=52 Identities=21% Similarity=0.406 Sum_probs=36.1
Q ss_pred CCChHHHHHHHHHhccCCCCCCC---C-Cc--c----c-CCCCCCChHHHHHHHHHccccCCC
Q 015543 290 MDEEKSLLERAFAMSMGTSVSDT---S-MA--D----A-DTSKATDEDKELALALQMSMQDDT 341 (405)
Q Consensus 290 ~~~e~~~L~~Al~mS~~~~~~~~---~-~~--~----~-~~~~~~~ee~~ia~A~~ms~~~~~ 341 (405)
.+++|+.|++||.||+++..... + .+ . . ....+.+||++|+.||+.||.+.+
T Consensus 8 ~~~eDeDLkrAieLSL~Es~~~~~~~~yvp~~~~~~~~~~~~~~edeD~DLKAAIaASLrd~E 70 (81)
T 1q0v_A 8 PEDEEELIRKAIELSLKESRNSASSEPIVPVVESKNEVKRQEIEEEEDPDLKAAIQESLREAE 70 (81)
T ss_dssp CSSHHHHHHHHHHHHHHCCCCCSCCCCCCCCCCCCCCCCCCCCCCCSCHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHhHHHHcCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHH
Confidence 35799999999999998764331 1 11 0 0 112246779999999999998654
No 49
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=94.18 E-value=0.027 Score=41.39 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=18.1
Q ss_pred CCCChHHHHHHHHHhccCCCC
Q 015543 289 PMDEEKSLLERAFAMSMGTSV 309 (405)
Q Consensus 289 ~~~~e~~~L~~Al~mS~~~~~ 309 (405)
+++||++-|++|+.|||+...
T Consensus 22 dmEDeeadLrrAiqLSmQGss 42 (52)
T 2klz_A 22 DMEDEEADLRRAIQLSMQGSS 42 (52)
T ss_dssp CCSSSHHHHHHHHHHHHTTCC
T ss_pred ccchhHHHHHHHHHHHhhccc
Confidence 456899999999999999763
No 50
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=93.21 E-value=0.032 Score=45.06 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=17.8
Q ss_pred CCCCCCCHHHHHHHHhcHHHH
Q 015543 218 GVDPNIDPELALALRVSMEEE 238 (405)
Q Consensus 218 gvDp~~DPELa~ALr~SlEEe 238 (405)
.++-..|.+|..||.|||+|-
T Consensus 6 ~~~~~eDeDLkrAieLSL~Es 26 (81)
T 1q0v_A 6 STPEDEEELIRKAIELSLKES 26 (81)
T ss_dssp CCCSSHHHHHHHHHHHHHHCC
T ss_pred ccccCchHHHHHHHHHhHHHH
Confidence 456667899999999999985
No 51
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=92.38 E-value=0.058 Score=47.11 Aligned_cols=93 Identities=20% Similarity=0.186 Sum_probs=46.3
Q ss_pred cCCCCCCccCCCCCCCHHHHHHHHhc--HHHHHHHHHHHHHHhhhhhcccCCCCCCccCcc--ccccccCCCCCcccccc
Q 015543 209 AGGVSDFDFGVDPNIDPELALALRVS--MEEERARQEAAAKRAADEASRQGKEEEPLSNSQ--DATMTDNTNNTAAETTE 284 (405)
Q Consensus 209 ~~~~~~~efgvDp~~DPELa~ALr~S--lEEe~~rq~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 284 (405)
++-..+++-.+||++==-|+|-|.-- -+|..+|+..+...+....+. ........+ ...+.... .. ...
T Consensus 28 ~~fefgvDp~~DPeLa~ALr~Smeee~~Rqe~~~~~~~e~saa~~~~a~---~~~~~~eeamL~~a~~~~~---~~-~~~ 100 (132)
T 1yx4_A 28 SDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIAT---TGTEDSDDALLKMTISQQE---FG-RTG 100 (132)
T ss_dssp SSCCSCSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSC---CCCCSCHHHHHHHHHHHHH---HH-HSS
T ss_pred cccccCCCCCcCHHHHHHHHHhHHHHHHHHHHHHHhhcccccccccccc---cCCcccHHHHHHHhhcccc---cC-CCC
Confidence 34456788889999999999997433 333334443333332222111 111000000 00000000 00 000
Q ss_pred CCCCCCCChHHHHHHHHHhccCCC
Q 015543 285 KTADPMDEEKSLLERAFAMSMGTS 308 (405)
Q Consensus 285 ~~~~~~~~e~~~L~~Al~mS~~~~ 308 (405)
......++||++|++||.|||++.
T Consensus 101 ~~d~~~MtEEeqLa~ALqMSMQe~ 124 (132)
T 1yx4_A 101 LPDLSSMTEEEQIAYAMQMSLQGA 124 (132)
T ss_dssp CCCSTTSCHHHHHHHHHHHSSSSC
T ss_pred CCchhhCChHHHHHHHHHhccccc
Confidence 112234688889999999999975
No 52
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=91.41 E-value=0.2 Score=35.50 Aligned_cols=14 Identities=43% Similarity=0.622 Sum_probs=11.4
Q ss_pred ChHHHHHHHHHhcc
Q 015543 292 EEKSLLERAFAMSM 305 (405)
Q Consensus 292 ~e~~~L~~Al~mS~ 305 (405)
.||.+|++|++-|+
T Consensus 30 ~EdellrKAIaESL 43 (45)
T 3a1q_C 30 KEEELLRKAIAESL 43 (45)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 47789999998875
No 53
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=91.38 E-value=0.22 Score=35.49 Aligned_cols=16 Identities=44% Similarity=0.634 Sum_probs=13.2
Q ss_pred ChHHHHHHHHHhccCC
Q 015543 292 EEKSLLERAFAMSMGT 307 (405)
Q Consensus 292 ~e~~~L~~Al~mS~~~ 307 (405)
.||.+|++|++-|+..
T Consensus 27 ~E~~llrKAIaESLn~ 42 (46)
T 2rr9_C 27 EEEELLRKAIAESLNS 42 (46)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5788999999998754
No 54
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=85.25 E-value=4.5 Score=33.32 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=18.0
Q ss_pred CCCCCCCHHHHHHHHhcHHHHHHHH
Q 015543 218 GVDPNIDPELALALRVSMEEERARQ 242 (405)
Q Consensus 218 gvDp~~DPELa~ALr~SlEEe~~rq 242 (405)
.++|..--+|+-+|+.-++....|+
T Consensus 121 ~~~~~~~~~l~~~i~~l~~~~~~~~ 145 (166)
T 3qhp_A 121 LFEPNNAKDLSAKIDWWLENKLERE 145 (166)
T ss_dssp EECTTCHHHHHHHHHHHHHCHHHHH
T ss_pred EEcCCCHHHHHHHHHHHHhCHHHHH
Confidence 4677777789999988877544443
No 55
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=80.72 E-value=0.48 Score=33.61 Aligned_cols=19 Identities=42% Similarity=0.585 Sum_probs=17.0
Q ss_pred CCChHHHHHHHHHccccCC
Q 015543 322 ATDEDKELALALQMSMQDD 340 (405)
Q Consensus 322 ~~~ee~~ia~A~~ms~~~~ 340 (405)
.|+||+++|.|+.||-|+.
T Consensus 3 ~mtEEEq~ALA~rmSeQEA 21 (45)
T 3a1q_C 3 LGSEEEQFALALKMSEQEA 21 (45)
T ss_dssp CSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhHHHH
Confidence 6899999999999998864
No 56
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=79.65 E-value=0.48 Score=33.74 Aligned_cols=18 Identities=44% Similarity=0.639 Sum_probs=16.3
Q ss_pred CChHHHHHHHHHccccCC
Q 015543 323 TDEDKELALALQMSMQDD 340 (405)
Q Consensus 323 ~~ee~~ia~A~~ms~~~~ 340 (405)
|+||+++|.|+.||-|+.
T Consensus 1 MtEEEq~ALA~kmSeQEA 18 (46)
T 2rr9_C 1 MTEEEQFALALKMSEQEA 18 (46)
T ss_dssp CCSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhHHHH
Confidence 789999999999998864
No 57
>1p9c_A 26S proteasome non-ATPase regulatory subunit 4; alpha helix, hairpin loop, ligand binding protein; NMR {Homo sapiens} SCOP: j.105.1.1 PDB: 1p9d_S 1uel_B
Probab=77.31 E-value=1.5 Score=31.45 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHhccCCC
Q 015543 291 DEEKSLLERAFAMSMGTS 308 (405)
Q Consensus 291 ~~e~~~L~~Al~mS~~~~ 308 (405)
.+++++|+.||.|||++.
T Consensus 19 mteeeqla~ALqMSmq~~ 36 (45)
T 1p9c_A 19 MTEEEQIAYAMQMSLQGA 36 (45)
T ss_dssp HHHHHHHHHHHHHHTSSS
T ss_pred cCchHHHHHHHHhccccc
Confidence 567888999999999965
No 58
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=64.61 E-value=26 Score=32.91 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=35.5
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC-CceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKN-SVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 107 ~~RIVvFvgSpi~~-d~~~l~~~akkLKkn-nI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
...+|+|+|..... ....++++++++++. ++.+.|||-|.. .+.|+.+++..+
T Consensus 210 ~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~----~~~l~~~~~~~~ 264 (394)
T 2jjm_A 210 SEKILIHISNFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGPE----FCTILQLVKNLH 264 (394)
T ss_dssp --CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCEEEEECCCTT----HHHHHHHHHTTT
T ss_pred CCeEEEEeeccccccCHHHHHHHHHHHHhhCCCEEEEECCchH----HHHHHHHHHHcC
Confidence 34678888887543 556777888888765 677777775543 357888887653
No 59
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=61.58 E-value=11 Score=31.81 Aligned_cols=49 Identities=14% Similarity=0.003 Sum_probs=28.9
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~ 160 (405)
..+.+|+|+|..... ....++++++++ .++.+.|||-|.... .++.+++
T Consensus 21 ~~~~~i~~~G~~~~~Kg~~~li~a~~~l--~~~~l~i~G~~~~~~----~l~~~~~ 70 (177)
T 2f9f_A 21 CYGDFWLSVNRIYPEKRIELQLEVFKKL--QDEKLYIVGWFSKGD----HAERYAR 70 (177)
T ss_dssp CCCSCEEEECCSSGGGTHHHHHHHHHHC--TTSCEEEEBCCCTTS----THHHHHH
T ss_pred CCCCEEEEEeccccccCHHHHHHHHHhC--CCcEEEEEecCccHH----HHHHHHH
Confidence 345567788876432 333444444444 378888888776552 5666666
No 60
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=58.08 E-value=65 Score=30.49 Aligned_cols=57 Identities=9% Similarity=0.170 Sum_probs=37.0
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC----CceEEEEEe----CCCCCCcHHHHHHHHHHHcCCCC
Q 015543 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKN----SVAIDIVNF----GEDDDGKPEKLEALLAAVNNNDS 167 (405)
Q Consensus 107 ~~RIVvFvgSpi~~-d~~~l~~~akkLKkn----nI~VdII~F----G~e~~~n~~~L~~f~~~vn~~d~ 167 (405)
...+|+|+|..... ....++++++++++. ++.+.|||- |... +.|+.+++..+-.++
T Consensus 242 ~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~----~~l~~~~~~~~l~~~ 307 (438)
T 3c48_A 242 HTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATP----DTYRHMAEELGVEKR 307 (438)
T ss_dssp SSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC----------CHHHHHHHHTTCTTT
T ss_pred CCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHH----HHHHHHHHHcCCCCc
Confidence 45678888886543 556778888888765 677777775 4333 478888887654343
No 61
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=56.01 E-value=21 Score=31.94 Aligned_cols=67 Identities=16% Similarity=0.303 Sum_probs=44.5
Q ss_pred CeEEEEEecCCCCCC-hhHHHHHHHHHHhCCceEEEEEeCCCCC-------CcHHHHHHHHHHHcCCCCcEEEEecC
Q 015543 107 RQRIIVFAGSPVKYD-RKVMEMIGKKLKKNSVAIDIVNFGEDDD-------GKPEKLEALLAAVNNNDSSHLVHVPT 175 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d-~~~l~~~akkLKknnI~VdII~FG~e~~-------~n~~~L~~f~~~vn~~d~Shlv~vp~ 175 (405)
.++|+|++||+.... ...+.+.+.++...++.|.+|.+.+--. ...+..++|.+++..-| .+|.+-|
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD--~~ii~tP 76 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSD--AVLAITP 76 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSS--EEEEECC
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCC--cEEEech
Confidence 368999999997642 3456666667778899999999875211 12356677888887544 4555544
No 62
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=54.42 E-value=37 Score=32.15 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=44.7
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCC-CcHHHHHHHHHHHcCCCCcEEE
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDD-GKPEKLEALLAAVNNNDSSHLV 171 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~-~n~~~L~~f~~~vn~~d~Shlv 171 (405)
....+|+|+|..... ....++++++.+++. ++++.|||-|.... ...+.|+.+++..+..++-+|+
T Consensus 229 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~ 298 (416)
T 2x6q_A 229 PEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVL 298 (416)
T ss_dssp TTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEe
Confidence 345678888876543 566788888888775 78888888886431 1235788888877654554444
No 63
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=51.79 E-value=46 Score=30.70 Aligned_cols=49 Identities=14% Similarity=0.098 Sum_probs=33.9
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHH
Q 015543 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALL 159 (405)
Q Consensus 107 ~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~~n~~~L~~f~ 159 (405)
...+|+|+|..... ....+++++++|++. ++.+.|||-|.. .+.|+.++
T Consensus 197 ~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~----~~~l~~~~ 248 (394)
T 3okp_A 197 TTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRY----ESTLRRLA 248 (394)
T ss_dssp TCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEECCCTT----HHHHHHHT
T ss_pred CceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEcCchH----HHHHHHHH
Confidence 34778898987543 566778888888775 677777776543 35677766
No 64
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=51.78 E-value=9.4 Score=24.38 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=12.3
Q ss_pred HHHHHHHHhcHHHHHHH
Q 015543 225 PELALALRVSMEEERAR 241 (405)
Q Consensus 225 PELa~ALr~SlEEe~~r 241 (405)
-||++||-+|+-|..+|
T Consensus 5 EEl~LAlAlS~sEae~~ 21 (26)
T 2d3g_P 5 EELQLALALSQSEAEEK 21 (26)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46888888887776554
No 65
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=51.72 E-value=23 Score=30.29 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=35.3
Q ss_pred CCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 106 QRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
..++|+|+.+|+...+..-...+++.|++.++.|.++.+...
T Consensus 3 ~~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 44 (159)
T 3fni_A 3 AETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAA 44 (159)
T ss_dssp CCCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCc
Confidence 346788888999777777888889999999999999999875
No 66
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=50.28 E-value=15 Score=31.59 Aligned_cols=40 Identities=10% Similarity=0.073 Sum_probs=32.0
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
++|+++.+|+...+..-...+++.|++.++.|.+|.+.+.
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 45 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAV 45 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCE
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhc
Confidence 3788899998544566667778889989999999998774
No 67
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=49.77 E-value=42 Score=31.59 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=31.3
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
..||+||.|+-+ +.+|=+-+|+.|+..+..|.|+-++...
T Consensus 85 ~~~vlVlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~~~~~~ 124 (259)
T 3d3k_A 85 RPTVALLCGPHV--KGAQGISCGRHLANHDVQVILFLPNFVK 124 (259)
T ss_dssp CCEEEEEECSSH--HHHHHHHHHHHHHHTTCEEEEECCBCSS
T ss_pred CCeEEEEECCCC--CHHHHHHHHHHHHHCCCeEEEEEecCCC
Confidence 357887766433 4778899999999999999999888543
No 68
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=48.63 E-value=13 Score=28.44 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=22.6
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHhhC
Q 015543 360 VSSILTSLPGVDPNDPSVKDLIASLQG 386 (405)
Q Consensus 360 l~svl~~lpgvdpn~~~i~~~~~~~~~ 386 (405)
+...|..+|||||.||.=+.+|.-|..
T Consensus 31 V~rfLs~~eg~d~~d~~r~rLl~HL~~ 57 (64)
T 2db7_A 31 VARYLSIIEGLDASDPLRVRLVSHLNN 57 (64)
T ss_dssp HHHHHHHTSCCCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 557889999999999988888877754
No 69
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=48.18 E-value=19 Score=31.56 Aligned_cols=40 Identities=5% Similarity=0.067 Sum_probs=32.7
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
++|+++.+|+...+..-...+++.|++.++.|.+|.+.+.
T Consensus 7 mkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 46 (211)
T 1ydg_A 7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRET 46 (211)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 5899999999544566666778888889999999999875
No 70
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=48.01 E-value=24 Score=31.48 Aligned_cols=44 Identities=7% Similarity=0.227 Sum_probs=30.1
Q ss_pred CCCCeEEEEEecCCCCCC-hhHH-HHHHH----HHHhC--CceEEEEEeCCC
Q 015543 104 KNQRQRIIVFAGSPVKYD-RKVM-EMIGK----KLKKN--SVAIDIVNFGED 147 (405)
Q Consensus 104 k~~~~RIVvFvgSpi~~d-~~~l-~~~ak----kLKkn--nI~VdII~FG~e 147 (405)
+.+-.||++|+|||.... ...+ ..+++ .|++. ++.|.+|.+++.
T Consensus 8 ~~~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~ 59 (191)
T 3k1y_A 8 HSHMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSEL 59 (191)
T ss_dssp -CCSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred hhhhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhC
Confidence 457789999999998642 2223 34444 56555 899999998763
No 71
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=47.77 E-value=17 Score=29.92 Aligned_cols=41 Identities=7% Similarity=0.279 Sum_probs=32.7
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
++|+|+.+|....+..-...+++.|.+.++.|+++.+.+..
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~ 42 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADAS 42 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBC
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCC
Confidence 36778888986556777778889999999999999987643
No 72
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=47.69 E-value=15 Score=30.22 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=31.6
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
++|+|+.+|+...+..-...+++.|...++.|.++.+.+.
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~ 40 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASV 40 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhC
Confidence 4678888999665666677788888888999999988653
No 73
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=47.68 E-value=26 Score=32.29 Aligned_cols=77 Identities=13% Similarity=0.169 Sum_probs=45.6
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC---CceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCCchhh
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN---SVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALS 181 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKkn---nI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~~lLs 181 (405)
....+|+|+|..... ....+.++++++++. ++.+.|||-|.. +.++.+++..+-.+ ++..+.... -+.
T Consensus 194 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~~-----~~~~~~~~~~~~~~--~v~~~g~~~-~~~ 265 (374)
T 2iw1_A 194 EQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKP-----RKFEALAEKLGVRS--NVHFFSGRN-DVS 265 (374)
T ss_dssp TTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCC-----HHHHHHHHHHTCGG--GEEEESCCS-CHH
T ss_pred CCCeEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCCH-----HHHHHHHHHcCCCC--cEEECCCcc-cHH
Confidence 345788899976543 455666667666554 788888877652 46888888764323 233333322 245
Q ss_pred hhhhcCccc
Q 015543 182 DVLISSPVF 190 (405)
Q Consensus 182 D~l~sSpI~ 190 (405)
+.+..+.|+
T Consensus 266 ~~~~~ad~~ 274 (374)
T 2iw1_A 266 ELMAAADLL 274 (374)
T ss_dssp HHHHHCSEE
T ss_pred HHHHhcCEE
Confidence 555555443
No 74
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=47.61 E-value=19 Score=30.68 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=33.3
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
++|+|+.+|+...+..-...+++.|++.++.|.++.+....
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~ 41 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVD 41 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCC
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCC
Confidence 35778889997677777788899999999999999987644
No 75
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=46.52 E-value=29 Score=32.42 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=38.2
Q ss_pred HHHHHHHHhcccCCCCC-----CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 90 GIQVAQLALKHRQNKNQ-----RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 90 gL~iA~lALKhr~~k~~-----~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
|..+|...+++.+.... ..||+||.|.-+ +.+|=+-+|+.|+..+..|.|+-++..
T Consensus 36 g~ava~~i~~~~~~~~~~~~~~~~~v~VlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~~~~~ 96 (246)
T 1jzt_A 36 GFSVAQAVCRQFPLRGKTETEKGKHVFVIAGPGN--NGGDGLVCARHLKLFGYNPVVFYPKRS 96 (246)
T ss_dssp HHHHHHHHHHHSCCSSCCHHHHTCEEEEEECSSH--HHHHHHHHHHHHHHTTCCEEEECCCCC
T ss_pred HHHHHHHHHHHccccccccccCCCeEEEEECCCC--CHHHHHHHHHHHHHCCCeEEEEEcCCC
Confidence 45566666665332111 158887766443 477889999999999999999877753
No 76
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=46.13 E-value=25 Score=34.01 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=31.2
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
..||+||.|+- + +.+|=+-+|+.|+..++.|.|+-+|...
T Consensus 132 ~~~vlVlcG~G-N-NGGDGlv~AR~L~~~G~~V~V~~~~~~~ 171 (306)
T 3d3j_A 132 RPTVALLCGPH-V-KGAQGISCGRHLANHDVQVILFLPNFVK 171 (306)
T ss_dssp CCEEEEEECSS-H-HHHHHHHHHHHHHHTTCEEEEECCCCSS
T ss_pred CCeEEEEECCC-C-CHHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 35787776643 3 4778899999999999999999888543
No 77
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=43.42 E-value=24 Score=30.25 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=32.0
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHh-CCceEEEEEeCCCC
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKK-NSVAIDIVNFGEDD 148 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKk-nnI~VdII~FG~e~ 148 (405)
++|+++.+|+...+..-...+++.|++ .++.|++|.+.+..
T Consensus 2 mkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~ 43 (198)
T 3b6i_A 2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETM 43 (198)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCS
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccC
Confidence 368888899754456666677888888 89999999998763
No 78
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=42.67 E-value=86 Score=28.39 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=41.6
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEe
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHV 173 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~v 173 (405)
++.|+.||.. |-....+.++.|++-+|.+++--.|.+ ...+.+..|++.....+-.-||.+
T Consensus 14 ~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~ev~V~SaH--R~p~~~~~~~~~a~~~g~~ViIa~ 74 (174)
T 3kuu_A 14 KIAIVMGSKS--DWATMQFAADVLTTLNVPFHVEVVSAH--RTPDRLFSFAEQAEANGLHVIIAG 74 (174)
T ss_dssp CEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCTT--TCHHHHHHHHHHTTTTTCSEEEEE
T ss_pred cEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEccc--CCHHHHHHHHHHHHhCCCcEEEEE
Confidence 5777777753 566778888888999998887666643 477888888876644333333333
No 79
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=42.43 E-value=1e+02 Score=27.62 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=41.0
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEe
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHV 173 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~v 173 (405)
++.|+.||.. |-....+.++.|++.+|..++--.|.+ ...+.+..|++.....+-.-||.+
T Consensus 7 ~V~IimgS~S--D~~v~~~a~~~l~~~gi~~ev~V~SaH--Rtp~~l~~~~~~~~~~g~~ViIa~ 67 (166)
T 3oow_A 7 QVGVIMGSKS--DWSTMKECCDILDNLGIGYECEVVSAH--RTPDKMFDYAETAKERGLKVIIAG 67 (166)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEECCTT--TCHHHHHHHHHHTTTTTCCEEEEE
T ss_pred eEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEEcCc--CCHHHHHHHHHHHHhCCCcEEEEE
Confidence 5777777753 566777888888888888876666643 467788888876654333344433
No 80
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=42.28 E-value=91 Score=27.89 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=35.7
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~ 164 (405)
.++.|+.||.. |-....+.++.|++.+|..++--.|.+ ...+.+..|++....
T Consensus 4 ~~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~SaH--R~p~~~~~~~~~a~~ 56 (163)
T 3ors_A 4 MKVAVIMGSSS--DWKIMQESCNMLDYFEIPYEKQVVSAH--RTPKMMVQFASEARE 56 (163)
T ss_dssp CCEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCTT--TSHHHHHHHHHHTTT
T ss_pred CeEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEECCc--CCHHHHHHHHHHHHh
Confidence 45666667653 566677778888888888776555542 467777888776544
No 81
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=41.60 E-value=1.1e+02 Score=27.93 Aligned_cols=66 Identities=14% Similarity=0.221 Sum_probs=43.9
Q ss_pred CCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEe
Q 015543 104 KNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHV 173 (405)
Q Consensus 104 k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~v 173 (405)
+++--.+.|+.||.. |-.-..++++.|++-+|..++--.|.. -..+.+..|+++....+-.-||.+
T Consensus 10 ~~~~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~SaH--R~p~~l~~~~~~a~~~g~~ViIa~ 75 (183)
T 1o4v_A 10 HHHVPRVGIIMGSDS--DLPVMKQAAEILEEFGIDYEITIVSAH--RTPDRMFEYAKNAEERGIEVIIAG 75 (183)
T ss_dssp ----CEEEEEESCGG--GHHHHHHHHHHHHHTTCEEEEEECCTT--TCHHHHHHHHHHTTTTTCCEEEEE
T ss_pred ccCCCeEEEEeccHH--HHHHHHHHHHHHHHcCCCeEEEEEccc--CCHHHHHHHHHHHHhCCCcEEEEe
Confidence 345567777777763 667788899999999999887777754 467888888886644333344443
No 82
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=41.38 E-value=1.2e+02 Score=26.96 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=33.9
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~ 164 (405)
++.|+.||.. |-....+.++.|++.+|..++--.|.+ -..+.+..|++....
T Consensus 4 ~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~saH--R~p~~~~~~~~~a~~ 55 (159)
T 3rg8_A 4 LVIILMGSSS--DMGHAEKIASELKTFGIEYAIRIGSAH--KTAEHVVSMLKEYEA 55 (159)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEECCTT--TCHHHHHHHHHHHHT
T ss_pred eEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEccc--CCHHHHHHHHHHhhh
Confidence 4666666653 556667777778888887775555542 467777777766543
No 83
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=41.26 E-value=1.2e+02 Score=27.34 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=44.1
Q ss_pred CCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEe
Q 015543 106 QRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHV 173 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~v 173 (405)
..-+|.|+.||.. |-..+.+.++.|++.+|..++--.|.+ ...+++..|++.....+-.-||.+
T Consensus 11 ~~P~V~IimGS~S--D~~v~~~a~~~l~~~gi~~ev~V~saH--R~p~~l~~~~~~a~~~g~~ViIa~ 74 (173)
T 4grd_A 11 SAPLVGVLMGSSS--DWDVMKHAVAILQEFGVPYEAKVVSAH--RMPDEMFDYAEKARERGLRAIIAG 74 (173)
T ss_dssp SSCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCTT--TSHHHHHHHHHHHTTTTCSEEEEE
T ss_pred CCCeEEEEeCcHh--HHHHHHHHHHHHHHcCCCEEEEEEccc--cCHHHHHHHHHHHHhcCCeEEEEe
Confidence 3445667777753 667788889999999999887666664 467888888887754443344443
No 84
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=41.18 E-value=42 Score=31.95 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=38.0
Q ss_pred HHHHHHHHhcccCC---CCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 90 GIQVAQLALKHRQN---KNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 90 gL~iA~lALKhr~~---k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
|..+|...+++.+. .+..+||+||.|.-+ +.+|=+-+|+.|+..++.|.|+-++.
T Consensus 59 G~ava~~i~~~~~~~~~~~~~~~VlVlcG~GN--NGGDGlv~AR~L~~~G~~V~V~~~~~ 116 (265)
T 2o8n_A 59 GLSCATAIAKAYPPTSMSKSPPTVLVICGPGN--NGGDGLVCARHLKLFGYQPTIYYPKR 116 (265)
T ss_dssp HHHHHHHHHHHSCGGGSSSSSCEEEEEECSSH--HHHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred HHHHHHHHHHHcccccccCCCCeEEEEECCCC--CHHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 45556555554321 112358887766543 47788999999999999999987775
No 85
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=40.40 E-value=39 Score=30.08 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=37.7
Q ss_pred CCCCeEEEEEecCCCCC------ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecC
Q 015543 104 KNQRQRIIVFAGSPVKY------DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPT 175 (405)
Q Consensus 104 k~~~~RIVvFvgSpi~~------d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~ 175 (405)
++...+|+++.|||... +..-+..+++.+++.+..|.+|.+.... + ++.+.+.+..-| ++|.+-|
T Consensus 9 ~~~~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~-d----~~~~~~~l~~AD--~iV~~~P 79 (204)
T 2amj_A 9 HHGSSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDY-D----VKAEVQNFLWAD--VVIWQMP 79 (204)
T ss_dssp ---CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCC-C----HHHHHHHHHHCS--EEEEEEE
T ss_pred ccCCcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccc-c----HHHHHHHHHhCC--EEEEECC
Confidence 45678999999999832 2222334566677779999999998754 2 333444443323 5555544
No 86
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=39.73 E-value=43 Score=31.36 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=37.9
Q ss_pred EEEEEecCCC-CC-ChhHHHHHHHHHHh----CCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 109 RIIVFAGSPV-KY-DRKVMEMIGKKLKK----NSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 109 RIVvFvgSpi-~~-d~~~l~~~akkLKk----nnI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
.+|+|+|... .. +...+.+++++|++ .++.+.|||=|... -.+.|+.+++..+
T Consensus 252 ~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~--~~~~l~~~~~~~~ 310 (439)
T 3fro_A 252 VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPE--LEGWARSLEEKHG 310 (439)
T ss_dssp EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHH--HHHHHHHHHHHCT
T ss_pred cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChh--HHHHHHHHHhhcC
Confidence 7899999886 44 67788899999988 56777777755422 1257777777553
No 87
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=39.46 E-value=99 Score=27.88 Aligned_cols=65 Identities=11% Similarity=0.132 Sum_probs=44.2
Q ss_pred CCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEe
Q 015543 105 NQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHV 173 (405)
Q Consensus 105 ~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~v 173 (405)
+.+-++.|+.||.. |-.-..++++.|++.+|..++--.|.. ...+.+..|.+.....+-.-||.+
T Consensus 9 ~~~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~SaH--R~p~~l~~~~~~a~~~g~~ViIa~ 73 (170)
T 1xmp_A 9 HMKSLVGVIMGSTS--DWETMKYACDILDELNIPYEKKVVSAH--RTPDYMFEYAETARERGLKVIIAG 73 (170)
T ss_dssp --CCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCTT--TSHHHHHHHHHHTTTTTCCEEEEE
T ss_pred cCCCcEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEecc--CCHHHHHHHHHHHHhCCCcEEEEE
Confidence 34556777777763 667788899999999999887666653 478888888876544333344443
No 88
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=38.58 E-value=29 Score=31.87 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=34.5
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
..++|+|+|.... .+.+..+++.+++-++++.|||-|.. .+.|+.+++..+
T Consensus 161 ~~~~i~~vG~~~~--~Kg~~~li~a~~~~~~~l~i~G~g~~----~~~l~~~~~~~~ 211 (342)
T 2iuy_A 161 KEDFLLFMGRVSP--HKGALEAAAFAHACGRRLVLAGPAWE----PEYFDEITRRYG 211 (342)
T ss_dssp CCSCEEEESCCCG--GGTHHHHHHHHHHHTCCEEEESCCCC----HHHHHHHHHHHT
T ss_pred CCCEEEEEecccc--ccCHHHHHHHHHhcCcEEEEEeCccc----HHHHHHHHHHhC
Confidence 4567899998753 34444455555555899999987753 357888888764
No 89
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=37.19 E-value=36 Score=31.03 Aligned_cols=41 Identities=2% Similarity=0.151 Sum_probs=31.6
Q ss_pred CeEEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 107 RQRIIVFAGSPVKY--DRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 107 ~~RIVvFvgSpi~~--d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
.++|+++.|||... +..-...+++.|++.+..|.+|.+.+.
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~ 43 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAM 43 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTT
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhc
Confidence 36899999999864 233445667888888999999999764
No 90
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=36.88 E-value=38 Score=31.50 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=44.4
Q ss_pred CCCeEEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCCCC-----cHHHHHHHHHHHcCCCCcEEEEecC
Q 015543 105 NQRQRIIVFAGSPVKY--DRKVMEMIGKKLKKNSVAIDIVNFGEDDDG-----KPEKLEALLAAVNNNDSSHLVHVPT 175 (405)
Q Consensus 105 ~~~~RIVvFvgSpi~~--d~~~l~~~akkLKknnI~VdII~FG~e~~~-----n~~~L~~f~~~vn~~d~Shlv~vp~ 175 (405)
...++|++++||+... +..-+..+++.+++.++.|.+|.+.+.... ..+-+..+++++..-| .+|.+-|
T Consensus 32 ~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD--~iI~~sP 107 (247)
T 2q62_A 32 THRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSE--GQVWVSP 107 (247)
T ss_dssp CSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCS--EEEEEEE
T ss_pred CCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCC--EEEEEeC
Confidence 3567999999999743 333444567788888999999999763211 1133566666665434 4555544
No 91
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=36.52 E-value=2e+02 Score=25.54 Aligned_cols=112 Identities=4% Similarity=-0.007 Sum_probs=65.7
Q ss_pred CcHHHHHHHHHHHHHHh-hccCCcCCcEEEEEecCCCceEEECCCCCH-HHHHHhhcc-----c----ccCCcccHHHHH
Q 015543 23 PSRLRAQADAVSLICGA-KTQSNPENTVGILTMGGKGVRVLTTPTTDL-GKILACMHE-----L----DIGGEMNIAAGI 91 (405)
Q Consensus 23 PtRl~Aq~dAv~~fv~~-k~~~NPes~VGlvtmag~~~~vLvtlT~D~-~kils~L~~-----l----~~~G~~sL~~gL 91 (405)
++-+.+...+++.++.. ..+-+-...||++..+.... +.+.++ .-+..+|.. + ...+..+...|.
T Consensus 108 ~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~----~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 183 (306)
T 8abp_A 108 LAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL----DTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAF 183 (306)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTS----HHHHHHHHHHHHHHHHHTCCGGGEEEEECSSSSHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCC----hHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCChHHHH
Confidence 57888888899888865 22222334788887544320 000011 112333332 1 124667788899
Q ss_pred HHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCc---eEEEEEeCC
Q 015543 92 QVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSV---AIDIVNFGE 146 (405)
Q Consensus 92 ~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI---~VdII~FG~ 146 (405)
+.+...|...+ ...-|+||.. +..-..-+.+.|++.++ .|.||||..
T Consensus 184 ~~~~~~l~~~~---~~~a~~i~~~-----nD~~A~g~~~al~~~g~~v~di~vvG~D~ 233 (306)
T 8abp_A 184 DAANSMLVQHP---EVKHWLIVGM-----NDSTVLGGVRATEGQGFKAADIIGIGING 233 (306)
T ss_dssp HHHHHHHTTCT---TCSEEEEECS-----SHHHHHHHHHHHHHTTCCGGGEEEEEESS
T ss_pred HHHHHHHHhCC---CCceEEEEeC-----CcHHHHHHHHHHHHcCCCCCceEEEEeCc
Confidence 98888887532 2233345522 23344567888899998 599999975
No 92
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=35.85 E-value=92 Score=28.84 Aligned_cols=50 Identities=24% Similarity=0.276 Sum_probs=33.1
Q ss_pred eEEEEEecCC-CCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHH
Q 015543 108 QRIIVFAGSP-VKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAV 162 (405)
Q Consensus 108 ~RIVvFvgSp-i~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~~n~~~L~~f~~~v 162 (405)
+.+|+|+|.. ... ....++++++++++. ++.+.|||-|.. +.|+.+++..
T Consensus 208 ~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~~~~-----~~l~~~~~~~ 261 (406)
T 2gek_A 208 GRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDE-----DELREQAGDL 261 (406)
T ss_dssp SCEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEEEEESCSCH-----HHHHHHTGGG
T ss_pred CeEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEEEEEcCCcH-----HHHHHHHHhc
Confidence 3688898887 433 566778888888775 566666665532 4666666543
No 93
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=35.78 E-value=43 Score=28.93 Aligned_cols=41 Identities=10% Similarity=0.284 Sum_probs=31.4
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHh-CCceEEEEEeCCC
Q 015543 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKK-NSVAIDIVNFGED 147 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d~~~l~~~akkLKk-nnI~VdII~FG~e 147 (405)
-++|+++.+|+...+..-...+++.|.+ .++.|+++.+...
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~ 45 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEA 45 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTC
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhC
Confidence 3578888899754456666677888888 8999999988653
No 94
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=35.73 E-value=70 Score=25.95 Aligned_cols=55 Identities=13% Similarity=0.322 Sum_probs=37.4
Q ss_pred CCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 105 NQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 105 ~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
...+.+|+||.+.. ..+....-...||++|.-||.---+.. +-+...+.|.....
T Consensus 49 dngkplvvfvngas---qndvnefqneakkegvsydvlkstdpe-eltqrvreflktag 103 (112)
T 2lnd_A 49 DNGKPLVVFVNGAS---QNDVNEFQNEAKKEGVSYDVLKSTDPE-ELTQRVREFLKTAG 103 (112)
T ss_dssp TCCSCEEEEECSCC---HHHHHHHHHHHHHHTCEEEEEECCCHH-HHHHHHHHHHHHTT
T ss_pred hcCCeEEEEecCcc---cccHHHHHHHHHhcCcchhhhccCCHH-HHHHHHHHHHHhcc
Confidence 45677888987663 556666667788999999987655433 34556667776543
No 95
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=35.69 E-value=1.1e+02 Score=27.76 Aligned_cols=62 Identities=11% Similarity=0.174 Sum_probs=42.3
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEe
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHV 173 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~v 173 (405)
.+|.|+.||.. |-....+.++.|++.+|..++--.|.+ ...+.+..|.+.....+-.-||.+
T Consensus 22 ~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~SaH--R~p~~l~~~~~~a~~~g~~ViIa~ 83 (182)
T 1u11_A 22 PVVGIIMGSQS--DWETMRHADALLTELEIPHETLIVSAH--RTPDRLADYARTAAERGLNVIIAG 83 (182)
T ss_dssp CSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCTT--TCHHHHHHHHHHTTTTTCCEEEEE
T ss_pred CEEEEEECcHH--HHHHHHHHHHHHHHcCCCeEEEEEccc--CCHHHHHHHHHHHHhCCCcEEEEe
Confidence 35777777763 666778888889999999887666653 467888888876544333334443
No 96
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=35.66 E-value=96 Score=27.94 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=11.8
Q ss_pred CCCHHHHHHHHhcHHHHH
Q 015543 222 NIDPELALALRVSMEEER 239 (405)
Q Consensus 222 ~~DPELa~ALr~SlEEe~ 239 (405)
-.||+|+-.||--.++.+
T Consensus 138 ~~d~~l~~kl~~~r~~~~ 155 (169)
T 3trh_A 138 LQDKSIAQKLVQQRTAKR 155 (169)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 358998888776554443
No 97
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=35.46 E-value=34 Score=29.86 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=29.5
Q ss_pred eEEEEEecCCCCC--ChhHHHHHHHH-HHhCCceEEEEEeCCC
Q 015543 108 QRIIVFAGSPVKY--DRKVMEMIGKK-LKKNSVAIDIVNFGED 147 (405)
Q Consensus 108 ~RIVvFvgSpi~~--d~~~l~~~akk-LKknnI~VdII~FG~e 147 (405)
++|++|.||+... +..-...+++. |+..++.|.+|.+...
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~ 45 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDL 45 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGS
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEcccc
Confidence 4789999998632 34444556677 7888999999998763
No 98
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=35.25 E-value=1.1e+02 Score=24.64 Aligned_cols=41 Identities=7% Similarity=0.146 Sum_probs=30.1
Q ss_pred eEEEEEecCCCC----CChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 108 QRIIVFAGSPVK----YDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 108 ~RIVvFvgSpi~----~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
.+.||+=.+.++ +.-+.|..+.+++++.|+.+.+++.....
T Consensus 48 ~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 92 (130)
T 2kln_A 48 VEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQDL 92 (130)
T ss_dssp CEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCSSHH
T ss_pred ceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 345555555554 24568899999999999999999886543
No 99
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=35.22 E-value=1.6e+02 Score=28.36 Aligned_cols=53 Identities=8% Similarity=-0.031 Sum_probs=39.3
Q ss_pred eEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 015543 108 QRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (405)
Q Consensus 108 ~RIVvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~v 162 (405)
..+|+|+|..... ....+++++++|++.++.+.|||-|... -.+.|+.++...
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~--~~~~l~~~~~~~ 344 (485)
T 1rzu_A 291 SPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVA--LEGALLAAASRH 344 (485)
T ss_dssp SCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHH--HHHHHHHHHHHT
T ss_pred CeEEEEEccCccccCHHHHHHHHHHHHhcCceEEEEeCCchH--HHHHHHHHHHhC
Confidence 4588999987543 5667788888888889999999987531 135788888765
No 100
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=34.93 E-value=87 Score=28.34 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=26.5
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~v 162 (405)
++.|+.||.. |-....++++.|++.+|..++--.|.+ -..+.+..|++..
T Consensus 9 ~V~IimgS~S--D~~v~~~a~~~L~~~gi~~ev~V~SaH--R~p~~~~~~~~~a 58 (174)
T 3lp6_A 9 RVGVIMGSDS--DWPVMADAAAALAEFDIPAEVRVVSAH--RTPEAMFSYARGA 58 (174)
T ss_dssp SEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCTT--TCHHHHHHHHHHH
T ss_pred eEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEECCC--CCHHHHHHHHHHH
Confidence 4555555542 444555666666666666554444432 3455666665544
No 101
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=33.65 E-value=2e+02 Score=27.71 Aligned_cols=54 Identities=9% Similarity=0.022 Sum_probs=39.7
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 015543 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (405)
Q Consensus 107 ~~RIVvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~v 162 (405)
...+|+|+|..... ....+++++++|++.++.+.|||-|... -.+.|+.++...
T Consensus 291 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~--~~~~l~~~~~~~ 345 (485)
T 2qzs_A 291 KVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPV--LQEGFLAAAAEY 345 (485)
T ss_dssp TSCEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEEECHH--HHHHHHHHHHHS
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeCCchH--HHHHHHHHHHhC
Confidence 45788898876533 5667888888888889999999988531 135778887765
No 102
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=33.47 E-value=19 Score=24.10 Aligned_cols=21 Identities=10% Similarity=0.279 Sum_probs=18.5
Q ss_pred ChhHHHHHHHHHHhCCceEEE
Q 015543 121 DRKVMEMIGKKLKKNSVAIDI 141 (405)
Q Consensus 121 d~~~l~~~akkLKknnI~VdI 141 (405)
+|.++.++-+..||.||+|..
T Consensus 13 tpeelkklkeeakkanirvtf 33 (36)
T 2ki0_A 13 TPEELKKLKEEAKKANIRVTF 33 (36)
T ss_dssp CHHHHHHHHHHHHHHCCCCCB
T ss_pred CHHHHHHHHHHHHhccEEEEe
Confidence 589999999999999999853
No 103
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=33.08 E-value=42 Score=32.07 Aligned_cols=68 Identities=16% Similarity=0.091 Sum_probs=45.3
Q ss_pred CCeEEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCCCC------cHHHHHHHHHHHcCCCCcEEEEecC
Q 015543 106 QRQRIIVFAGSPVKY--DRKVMEMIGKKLKKNSVAIDIVNFGEDDDG------KPEKLEALLAAVNNNDSSHLVHVPT 175 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~--d~~~l~~~akkLKknnI~VdII~FG~e~~~------n~~~L~~f~~~vn~~d~Shlv~vp~ 175 (405)
..++|++|.||+... +..-+..+++.+++.++.|.+|.+.+.... ..+.+..|++.+..-| .+|.+-|
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~AD--giV~aSP 132 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSE--GQVWCSP 132 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCS--EEEEEEE
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCC--eEEEEcC
Confidence 567999999999743 334445577888888999999999874311 1234666777665444 4555544
No 104
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=32.47 E-value=39 Score=29.04 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=30.5
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
++|+++.+| ...+..-...+++.|++.++.|.+|.+.+.
T Consensus 5 mkilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 43 (199)
T 2zki_A 5 PNILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRVRET 43 (199)
T ss_dssp CEEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred cEEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEehhHh
Confidence 578888899 433555666778888888999999999765
No 105
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=31.28 E-value=1.6e+02 Score=24.12 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=39.9
Q ss_pred EEEEecCCCCCC------hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCC
Q 015543 110 IIVFAGSPVKYD------RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGP 177 (405)
Q Consensus 110 IVvFvgSpi~~d------~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~ 177 (405)
-|+|+|..++.. ..-...+.+.|...+..+.++++|-....-...+..|-..+... ...+|+|--|.
T Consensus 4 ~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~-~pd~vvi~~G~ 76 (185)
T 3hp4_A 4 TILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDALLEQY-EPTHVLIELGA 76 (185)
T ss_dssp EEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHHHHHH-CCSEEEEECCH
T ss_pred eEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHHHhhc-CCCEEEEEeec
Confidence 355557666542 23466778889988999999999887732334555544433211 22455555553
No 106
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=30.74 E-value=1.7e+02 Score=24.26 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=32.0
Q ss_pred eEEEEEecCCC-CC-ChhHHHHHHHHHH--hC--CceEEEEEeCCCCCCcHHHHHHHHHHH
Q 015543 108 QRIIVFAGSPV-KY-DRKVMEMIGKKLK--KN--SVAIDIVNFGEDDDGKPEKLEALLAAV 162 (405)
Q Consensus 108 ~RIVvFvgSpi-~~-d~~~l~~~akkLK--kn--nI~VdII~FG~e~~~n~~~L~~f~~~v 162 (405)
..+|+|+|... .. ....+.+++++++ +. ++++.|||-|... ..+.|+.+++..
T Consensus 36 ~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~--~~~~l~~~~~~~ 94 (200)
T 2bfw_A 36 GVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPE--LEGWARSLEEKH 94 (200)
T ss_dssp CEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHH--HHHHHHHHHHHC
T ss_pred CCEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChH--HHHHHHHHHHhc
Confidence 34777888765 32 5667778888885 43 4666666554310 234667776654
No 107
>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin, crystallography motility; 2.30A {Geobacillus stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A* 2pgi_A
Probab=30.49 E-value=1.3e+02 Score=30.65 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcccCCC-CCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC---CcHHHHHHHHHHHcC
Q 015543 89 AGIQVAQLALKHRQNK-NQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDD---GKPEKLEALLAAVNN 164 (405)
Q Consensus 89 ~gL~iA~lALKhr~~k-~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~---~n~~~L~~f~~~vn~ 164 (405)
-|-+++..+|++.... ......++|+++. .|+..+..+.+.|.-.+--|-||+-.-... .|...++..+.+-.+
T Consensus 85 LG~~~v~~aL~~~~~~~~~~~~~~~fv~~N--vDp~~i~~~l~~l~~~~TlviviSKSGtT~ET~~~~~~ar~~l~~~~G 162 (445)
T 1b0z_A 85 LGARAAIEALSHTFHNQMNDTTQIYFAGQN--ISSTYISHLLDVLEGKDLSINVISKSGTTTEPAIAFRIFRDYMEKKYG 162 (445)
T ss_dssp HHHHHHHHHHSCTTGGGSTTSCEEEEESSS--CCHHHHHHHHHHHTTCCEEEEEECSSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhcccccccCCceEEEeCC--CCHHHHHHHHhhCCcCcEEEEEEeCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 3678888889874210 0012456677644 489999999999988888888888654321 223333332221111
Q ss_pred CC--CcEEEEecCC
Q 015543 165 ND--SSHLVHVPTG 176 (405)
Q Consensus 165 ~d--~Shlv~vp~g 176 (405)
.+ ..|+|.|-..
T Consensus 163 ~~~~~~~~vavT~~ 176 (445)
T 1b0z_A 163 KEEARKRIYVTTDR 176 (445)
T ss_dssp HHHHGGGEEEEECS
T ss_pred chhhcCEEEEEecC
Confidence 11 2788888654
No 108
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27
Probab=30.22 E-value=2.3e+02 Score=23.22 Aligned_cols=48 Identities=10% Similarity=-0.036 Sum_probs=28.1
Q ss_pred HHhC-CceEEEEEeCCCCCCcHHHHHHHHHHHc-CCC--CcEEEEecCCCch
Q 015543 132 LKKN-SVAIDIVNFGEDDDGKPEKLEALLAAVN-NND--SSHLVHVPTGPNA 179 (405)
Q Consensus 132 LKkn-nI~VdII~FG~e~~~n~~~L~~f~~~vn-~~d--~Shlv~vp~g~~l 179 (405)
+++- +++|-+|.=........+..+.+.+.+. ..+ +..+++++...|.
T Consensus 167 ~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 218 (238)
T 1ufo_A 167 GEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHT 218 (238)
T ss_dssp GGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCSS
T ss_pred hhhccCCcEEEEECCCCCccCcHHHHHHHHHHhhcCCCCceEEEEeCCCCcc
Confidence 3444 6777776533322233466777877776 433 6677777765553
No 109
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=29.79 E-value=61 Score=26.68 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=28.3
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~ 143 (405)
+|+|+.+|....+..-...+++.|...++.|.++.
T Consensus 3 ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~ 37 (147)
T 2hna_A 3 DITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLH 37 (147)
T ss_dssp SEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEEECCchHHHHHHHHHHHHHHHCCCceEEec
Confidence 46777788877788888889999998888888764
No 110
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.74 E-value=11 Score=36.05 Aligned_cols=19 Identities=42% Similarity=0.693 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHccccCC
Q 015543 322 ATDEDKELALALQMSMQDD 340 (405)
Q Consensus 322 ~~~ee~~ia~A~~ms~~~~ 340 (405)
+...|++||.||+|||++.
T Consensus 221 dp~~dpela~alr~s~eee 239 (268)
T 4b4t_W 221 DPSMDPELAMALRLSMEEE 239 (268)
T ss_dssp -------------------
T ss_pred CCCCCHHHHHHHHHhHHHH
Confidence 4556888999999998753
No 111
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=29.55 E-value=46 Score=28.41 Aligned_cols=40 Identities=8% Similarity=0.252 Sum_probs=29.1
Q ss_pred eEEEEEecCCCC--C-ChhHHHHHHHHHHhCC--ceEEEEEeCCC
Q 015543 108 QRIIVFAGSPVK--Y-DRKVMEMIGKKLKKNS--VAIDIVNFGED 147 (405)
Q Consensus 108 ~RIVvFvgSpi~--~-d~~~l~~~akkLKknn--I~VdII~FG~e 147 (405)
++|+++.|||.. . +..-...+++.|++.+ +.|.+|.+...
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~ 46 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAAN 46 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTS
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence 478999999973 3 3334445677788765 89999998764
No 112
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.85 E-value=2.5e+02 Score=23.29 Aligned_cols=51 Identities=18% Similarity=0.282 Sum_probs=34.3
Q ss_pred CCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 119 KYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 119 ~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
.+|+..+-+.-...|||+..|.+|-- ..-|+.-++.+-..-|..+|+|--.
T Consensus 9 stdeetlrkfkdiikkngfkvrtvrs-------pqelkdsieelvkkynativvvvvd 59 (134)
T 2l69_A 9 STDEETLRKFKDIIKKNGFKVRTVRS-------PQELKDSIEELVKKYNATIVVVVVD 59 (134)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEECS-------HHHHHHHHHHHTTCCCCEEEEEECS
T ss_pred eCCHHHHHHHHHHHHhcCceEEEecC-------HHHHHHHHHHHHHHhCCeEEEEEEc
Confidence 45888999998999999999998732 3345555555544445555555433
No 113
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=28.71 E-value=54 Score=26.12 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=28.1
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
|+|+.+|....+..-...+++.+...++.|+++.+.+.
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~ 39 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDT 39 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSC
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccC
Confidence 45566887555666667778888888999999987653
No 114
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis}
Probab=28.51 E-value=3.7e+02 Score=25.43 Aligned_cols=83 Identities=7% Similarity=-0.018 Sum_probs=40.6
Q ss_pred HHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHH-HHHHh---CCceEEEEEeCCCCCC-------c--HHHHH
Q 015543 90 GIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIG-KKLKK---NSVAIDIVNFGEDDDG-------K--PEKLE 156 (405)
Q Consensus 90 gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~a-kkLKk---nnI~VdII~FG~e~~~-------n--~~~L~ 156 (405)
|+.....+++| +..-..+|.++++.-- +...+.+.. +.++. .+.+|. |..|+.. . + .+-..
T Consensus 148 G~~al~~~~~~---p~~F~~~~~~S~~~w~-~~~~~~~~~~~~~~~~~~~~~~l~-l~~G~~d-~~~~~~~~~~~~~~~~ 221 (331)
T 3gff_A 148 GLVAMEALRTD---RPLFSAYLALDTSLWF-DSPHYLTLLEERVVKGDFKQKQLF-MAIANNP-LSPGFGVSSYHKDLNL 221 (331)
T ss_dssp HHHHHHHHHTT---CSSCSEEEEESCCTTT-TTTHHHHHHHHHHHHCCCSSEEEE-EEECCCS-EETTTEECCHHHHHHH
T ss_pred HHHHHHHHHhC---chhhheeeEeCchhcC-ChHHHHHHHHHHhhcccCCCCeEE-EEeCCCC-CCCccchHHHHHHHHH
Confidence 44444455665 2455677777666532 333444333 33332 345664 4577765 3 1 11124
Q ss_pred HHHHHHcC----CCCcEEEEecCCCc
Q 015543 157 ALLAAVNN----NDSSHLVHVPTGPN 178 (405)
Q Consensus 157 ~f~~~vn~----~d~Shlv~vp~g~~ 178 (405)
+|.+.+.. +-..+|...|.+.|
T Consensus 222 ~l~~~Lk~~~~~g~~~~~~~~pg~~H 247 (331)
T 3gff_A 222 AFADKLTKLAPKGLGFMAKYYPEETH 247 (331)
T ss_dssp HHHHHHHHHCCTTEEEEEEECTTCCT
T ss_pred HHHHHHHhccCCCceEEEEECCCCCc
Confidence 44444432 12456677776544
No 115
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=28.19 E-value=32 Score=27.94 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=30.5
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
|+|+.+|....+..-...+++.|++.++.|+++.+.+..
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~ 39 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVN 39 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCC
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCC
Confidence 456668876566777788899999999999999987643
No 116
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=27.54 E-value=1.2e+02 Score=24.18 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=22.0
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEeC
Q 015543 121 DRKVMEMIGKKLKKNSVAIDIVNFG 145 (405)
Q Consensus 121 d~~~l~~~akkLKknnI~VdII~FG 145 (405)
++.++.++...|++.+|.|.+|++|
T Consensus 74 ~~~~~~~ai~~L~~~~v~vEvlg~~ 98 (98)
T 3ced_A 74 SSVDFGKFEKELIERQVKMEVLRHG 98 (98)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEecCC
Confidence 3667889999999999999999876
No 117
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=27.51 E-value=50 Score=30.46 Aligned_cols=58 Identities=9% Similarity=0.162 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 87 IAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 87 L~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
+..++..+...++. ....+++|+||.||-....+.-...+++.| ..++.+.++.+.+-
T Consensus 22 ~~~av~~~~~l~~~--~~~~~~kv~IlYgS~tGnte~~A~~La~~l-~~g~~v~v~~l~~~ 79 (219)
T 3hr4_A 22 LVKAVLFACMLMRK--TMASRVRVTILFATETGKSEALAWDLGALF-SCAFNPKVVCMDKY 79 (219)
T ss_dssp HHHHHHHHHHHHHH--HHHTSCEEEEEEECSSSHHHHHHHHHHHHH-TTTSEEEEEEGGGC
T ss_pred HHHHHHHHHHHHHH--HHhcCCcEEEEEECCchHHHHHHHHHHHHH-HcCCCeEEEEcccC
Confidence 34555555544433 234677889998998766677777777777 57899999988764
No 118
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=27.45 E-value=1.3e+02 Score=27.54 Aligned_cols=60 Identities=17% Similarity=0.299 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChh----H--------H----HHHHHHHHhCCceEEEEEeCC
Q 015543 85 MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRK----V--------M----EMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~----~--------l----~~~akkLKknnI~VdII~FG~ 146 (405)
+++...+.+++.++++... ....||| +++|.....+. . + ..+++.+++.+|+|..|.-|.
T Consensus 123 vN~~g~~~l~~~~~~~m~~-~~~g~iv-~isS~~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~ 198 (285)
T 3sc4_A 123 IQVRGTYAVSQSCIPHMKG-RDNPHIL-TLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRT 198 (285)
T ss_dssp HHHHHHHHHHHHHGGGTTT-SSSCEEE-ECCCCCCCSGGGSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSS
T ss_pred HHhHHHHHHHHHHHHHHHH-cCCcEEE-EECChhhccCCCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCC
Confidence 4566677788888887532 2334554 55664432111 1 1 234566677899999999994
No 119
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=27.03 E-value=78 Score=32.66 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=39.9
Q ss_pred HHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 90 GIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 90 gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
|..+|...+++.+ ....+||+||.|+-+ +.+|=+-+|+.|+..+..|.|+-++..
T Consensus 36 g~a~a~~i~~~~~-~~~~~~v~VlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~~~~~ 90 (502)
T 3rss_A 36 GISVVLAMEEELG-NLSDYRFLVLCGGGN--NGGDGFVVARNLLGVVKDVLVVFLGKK 90 (502)
T ss_dssp HHHHHHHHHHHHS-CCTTCEEEEEECSSH--HHHHHHHHHHHHTTTSSEEEEEECCSS
T ss_pred HHHHHHHHHHhcC-ccCCCEEEEEECCCC--CHHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 4556655555532 124568888766533 477889999999999999999999876
No 120
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=26.99 E-value=3.4e+02 Score=27.06 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=44.3
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChh----------------------HHHHHHHHHHhCCceEE
Q 015543 83 GEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRK----------------------VMEMIGKKLKKNSVAID 140 (405)
Q Consensus 83 G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~----------------------~l~~~akkLKknnI~Vd 140 (405)
|..++..-+.++..|-++ .-+.+|-|-+|+.=.||+ .-..++.+||++++.|+
T Consensus 84 g~~d~~~~~~~a~~Ak~~-----GLkVlldfHysD~WadPg~Q~~P~aW~~~~~~~l~~~~~~yt~~~l~~l~~~g~~~~ 158 (399)
T 1ur4_A 84 GNNDLEKAIQIGKRATAN-----GMKLLADFHYSDFWADPAKQKAPKAWANLNFEDKKTALYQYTKQSLKAMKAAGIDIG 158 (399)
T ss_dssp TCCCHHHHHHHHHHHHHT-----TCEEEEEECSSSSCCSSSCCCCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCHHHHHHHHHHHHHC-----CCEEEEEeccCCccCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 557888888888888654 345556666664422331 12356788999999999
Q ss_pred EEEeCCCCCCc
Q 015543 141 IVNFGEDDDGK 151 (405)
Q Consensus 141 II~FG~e~~~n 151 (405)
.|..|.|. .+
T Consensus 159 ~vqvGNEi-~~ 168 (399)
T 1ur4_A 159 MVQVGNET-NG 168 (399)
T ss_dssp EEEESSSC-SS
T ss_pred EEEEcccc-cc
Confidence 99999988 44
No 121
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=26.81 E-value=38 Score=30.12 Aligned_cols=41 Identities=10% Similarity=0.155 Sum_probs=33.2
Q ss_pred CCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 106 QRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
..++|+|+.+|....+++-...+++.|...++.|+++.+..
T Consensus 20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~ 60 (191)
T 1bvy_F 20 HNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDS 60 (191)
T ss_dssp -CCCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGG
T ss_pred CCCeEEEEEECCChHHHHHHHHHHHHHHhCCCceEEeeHHH
Confidence 45678888899877777778888999998899999988765
No 122
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=26.49 E-value=31 Score=26.63 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=26.4
Q ss_pred CCChHHHHHHHHH-----ccccCCCCCCCCcchhhhccCCHHHHHHHHhcCCCCCCCCHHHHHHHHHhh
Q 015543 322 ATDEDKELALALQ-----MSMQDDTKDPSNQSDMSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIASLQ 385 (405)
Q Consensus 322 ~~~ee~~ia~A~~-----ms~~~~~~~~~~~~~~~~~~~d~~fl~svl~~lpgvdpn~~~i~~~~~~~~ 385 (405)
..++++.++++++ ..|+++.-. .-..++++||..++..+. ||.|++.+..|.
T Consensus 6 ~e~~ee~~~~~m~dPEi~~im~DP~~~----~~lq~~~~NP~~~~k~~~--------nP~v~~~i~kl~ 62 (71)
T 2llw_A 6 NETPEETYQRAMKDPEVAAIMQDPVMQ----SILQQAQQNPAALQEHMK--------NPEVFKKIQTLI 62 (71)
T ss_dssp CSCHHHHHHHHHHSHHHHHHHTCTHHH----HHHHHHHHCHHHHHHHHH--------SHHHHHHHHHHH
T ss_pred CCCcHHHHHHHhcCHHHHHHhCCHHHH----HHHHHHHHCHHHHHHHHh--------CHHHHHHHHHHH
Confidence 4466777777765 223222111 233344455555555543 466776666553
No 123
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=25.89 E-value=3.6e+02 Score=24.43 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=36.4
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEe
Q 015543 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHV 173 (405)
Q Consensus 110 IVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~v 173 (405)
+-|+.||.. |-..+.+.++.|++.+|..++--.+.. .+.+++..|++.....+-.-+|.+
T Consensus 25 V~IimGS~S--D~~v~~~a~~~L~~~gI~~e~~V~SAH--Rtp~~l~~~~~~a~~~g~~ViIa~ 84 (181)
T 4b4k_A 25 VGVIMGSTS--DWETMKYACDILDELNIPYEKKVVSAH--RTPDYMFEYAETARERGLKVIIAG 84 (181)
T ss_dssp EEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCTT--TSHHHHHHHHHHTTTTTCCEEEEE
T ss_pred EEEEECCHh--HHHHHHHHHHHHHHcCCCeeEEEEccc--cChHHHHHHHHHHHhcCceEEEEe
Confidence 445556653 555677777777777777766666553 366777777776544333333333
No 124
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=25.49 E-value=68 Score=28.16 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=29.9
Q ss_pred eEEEEEecCCCCC---ChhHHHHHHHHHHhC--CceEEEEEeCCC
Q 015543 108 QRIIVFAGSPVKY---DRKVMEMIGKKLKKN--SVAIDIVNFGED 147 (405)
Q Consensus 108 ~RIVvFvgSpi~~---d~~~l~~~akkLKkn--nI~VdII~FG~e 147 (405)
++|+++.|||... +..-...+++.+++. +..|.+|.+.+.
T Consensus 2 mkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~ 46 (212)
T 3r6w_A 2 SRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRV 46 (212)
T ss_dssp CCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSS
T ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 4689999999863 333445667888877 899999998765
No 125
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=25.09 E-value=87 Score=27.20 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=35.8
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 015543 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAA 161 (405)
Q Consensus 109 RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~ 161 (405)
+-|.|.|+.-...++.+.++++.+++.++.|.+..=|... ...+.++.|.+.
T Consensus 71 ~~i~~~GGEP~l~~~~l~~l~~~~~~~~~~i~i~Tng~~~-~~~~~~~~l~~~ 122 (245)
T 3c8f_A 71 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVR-RYDPVIDELLEV 122 (245)
T ss_dssp CEEEEEESCGGGGHHHHHHHHHHHHTTTCCEEEEECCCCC-CCCHHHHHHHHT
T ss_pred CeEEEECCCcCCCHHHHHHHHHHHHHcCCcEEEEeCCCcC-cCHHHHHHHHHh
Confidence 3466777654445555789999999999988887767541 134677777764
No 126
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=24.74 E-value=1.2e+02 Score=26.93 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=38.2
Q ss_pred CeEEEEEecCCCCCC-hhHHHHHHHHHHhCCceEE-EEEeCCCCCCc--------HHHHHHHHHHHcCCCCcEEEEecC
Q 015543 107 RQRIIVFAGSPVKYD-RKVMEMIGKKLKKNSVAID-IVNFGEDDDGK--------PEKLEALLAAVNNNDSSHLVHVPT 175 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d-~~~l~~~akkLKknnI~Vd-II~FG~e~~~n--------~~~L~~f~~~vn~~d~Shlv~vp~ 175 (405)
.++|++|+||+.... ...+.+.+.+..+.++.|. +|.+++--..+ .+-.+.+.+++..-| .+|.+-|
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~~~~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD--~iVi~tP 82 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATAD--AVVIVTP 82 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHHHCCTTEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSS--EEEEEEC
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHHHccCCCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCC--EEEEEcC
Confidence 478999999987532 2333333333334688888 88876522111 123456666666444 5555555
No 127
>3fzy_A RTX toxin RTXA; RTXA toxin, CPD, cysteine protease domain, PRE-cleavage form IDP00167, structural genomics; HET: IHP; 1.95A {Vibrio cholerae} PDB: 3eeb_A* 3gcd_A*
Probab=24.59 E-value=1.7e+02 Score=27.53 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhccc-CCCCCCeEEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 87 IAAGIQVAQLALKHR-QNKNQRQRIIVFAGSPVKY--DRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 87 L~~gL~iA~lALKhr-~~k~~~~RIVvFvgSpi~~--d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
|.+.|.--..-|+.- .....+++|++.-|+.... ...-..+.+..|.+++|+.+|-+.-.++
T Consensus 136 LA~~L~~~~~~l~~~~~i~~~P~~IsLvGCsL~~~~~~~~Fa~~f~~aL~~~Gi~~~VsAr~~~V 200 (234)
T 3fzy_A 136 LAVKLAKFQQSFNQAENINNKPDHISIVGSSLVSDDKQKGFGHQFINAMDANGLRVDVSVRSSEL 200 (234)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCSEEEEESSSCSCTTSSSSHHHHHHHHHHHTTCCCEEEEESSCE
T ss_pred HHHHHHHHHHHhhhhhccCCCCCEEEEEEecCcCCCccccHHHHHHHHHHhCCCceeEEEEEeeE
Confidence 444444444444321 1345678888887877764 3456788999999999999999988877
No 128
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=24.34 E-value=86 Score=26.74 Aligned_cols=39 Identities=10% Similarity=0.299 Sum_probs=27.7
Q ss_pred eEEEEEecCCCC--CChhHHHHHHHHHHhC------CceEEEEEeCC
Q 015543 108 QRIIVFAGSPVK--YDRKVMEMIGKKLKKN------SVAIDIVNFGE 146 (405)
Q Consensus 108 ~RIVvFvgSpi~--~d~~~l~~~akkLKkn------nI~VdII~FG~ 146 (405)
++|+++.||+.. .+..-...+++.+++. ++.|.+|.+.+
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~ 47 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQ 47 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHH
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhh
Confidence 478999999973 2344445566777765 68999998765
No 129
>4f8x_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA; 1.47A {Penicillium canescens}
Probab=24.21 E-value=1.4e+02 Score=29.18 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=41.1
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCC---hhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 83 GEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYD---RKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 83 G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d---~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
|.--+..+.+.|+.+|.... ....++.+= +=.+... ...++++++.|+..||+||-|||=.+.
T Consensus 151 G~~~i~~aF~~Ar~a~~~~~--dP~a~L~~N-DYn~e~~~~k~~~~~~lv~~l~~~gvpidgiG~Q~H~ 216 (335)
T 4f8x_A 151 GEEYFYLAFKYAQEALAQIG--ANDVKLYYN-DYGIENPGTKSTAVLQLVSNLRKRGIRIDGVGLESHF 216 (335)
T ss_dssp CTHHHHHHHHHHHHHHHHTT--CTTSEEEEE-ESSCSSSSHHHHHHHHHHHHHHHTTCCCCEEEECCEE
T ss_pred CHHHHHHHHHHHHHhccccC--CCCcEEEEe-cccccCCcHhHHHHHHHHHHHHHCCCCcceeeeeeee
Confidence 55667889999999976421 122322221 2112221 247889999999999999999986543
No 130
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=23.91 E-value=97 Score=27.30 Aligned_cols=58 Identities=16% Similarity=0.120 Sum_probs=39.2
Q ss_pred cccCCcccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 79 LDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 79 l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
..|.|---..-.++-|...|+. .+...+|+++++-+| ..+.+|.+.+|.+.-|++|.-
T Consensus 51 a~P~gvk~~i~sve~ai~~~~~--~~~~~~~v~ll~k~p---------~d~~~lve~Gv~i~~iNvG~m 108 (163)
T 1ble_A 51 VAPSNVKASAVSVSKMAKAFHS--PRYEGVTAMLLFENP---------SDIVSLIEAGVPIKTVNVGGM 108 (163)
T ss_dssp SSCTTSEEEEECHHHHHHHHHC--STTTTCEEEEEESSS---------HHHHHHHTTTCCCCEEEEEEB
T ss_pred hCCCCCeEEEEEHHHHHHHHhc--ccCCCceEEEEECCH---------HHHHHHHHcCCCCCEEEECCC
Confidence 3555532222345555556665 446778888888887 566777889999999999863
No 131
>3qbr_A SJA, sjchgc06286 protein; helical bundle, BCL-2-like fold, apoptosis; HET: NHE; 2.60A {Schistosoma japonicum}
Probab=23.87 E-value=27 Score=31.74 Aligned_cols=31 Identities=23% Similarity=0.469 Sum_probs=25.4
Q ss_pred CCHHHHHHHHhcCCCCC-CCCHHHHHHHHHhhC
Q 015543 355 GDQSFVSSILTSLPGVD-PNDPSVKDLIASLQG 386 (405)
Q Consensus 355 ~d~~fl~svl~~lpgvd-pn~~~i~~~~~~~~~ 386 (405)
+|.++|..||.+ |||| |+||..|+++..|..
T Consensus 36 ~~~~~~~~~~~~-~~~~l~~dp~~~~v~~~L~~ 67 (179)
T 3qbr_A 36 QDTDYLTDLLDN-TNIDLTCVPNGQEIIHSLLQ 67 (179)
T ss_dssp HHHHHHHHHHHH-HTCCCCCCTTHHHHHHHHHH
T ss_pred ccchHHHHHHcC-CCCCCCCCCChHHHHHHHHH
Confidence 478899999876 8998 579999998888764
No 132
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=23.79 E-value=63 Score=28.07 Aligned_cols=38 Identities=13% Similarity=0.318 Sum_probs=28.1
Q ss_pred eEEEEEecCCCC---C-ChhHHHHHHHHHHhCC--ceEEEEEeC
Q 015543 108 QRIIVFAGSPVK---Y-DRKVMEMIGKKLKKNS--VAIDIVNFG 145 (405)
Q Consensus 108 ~RIVvFvgSpi~---~-d~~~l~~~akkLKknn--I~VdII~FG 145 (405)
++|+++.|||.. . +..-...+++.+++.+ +.|.+|.+.
T Consensus 2 ~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 2 SKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred CeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 478999999983 2 2223345677888876 999999998
No 133
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori}
Probab=23.70 E-value=1.4e+02 Score=30.50 Aligned_cols=53 Identities=9% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015543 90 GIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (405)
Q Consensus 90 gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~ 148 (405)
|..+|...+++.+ ..+||+||.|+-+ +.+|=+-+|+.|+.. +.|.|+-++...
T Consensus 32 g~ava~~i~~~~~---~~~~v~VlcG~GN--NGGDGlv~AR~L~~~-~~V~v~~~~~~~ 84 (475)
T 3k5w_A 32 AMALERAVLQNAS---LGAKVIILCGSGD--NGGDGYALARRLVGR-FRVLVFEMKLTK 84 (475)
T ss_dssp HHHHHHHHHTTSC---TTCEEEEEECSSH--HHHHHHHHHHHHBTT-BEEEEEESSCCC
T ss_pred HHHHHHHHHHHcC---CCCeEEEEECCCC--CHHHHHHHHHHHHcC-CceEEEEeCCCC
Confidence 4555655555432 3568888866533 477889999999977 999999888643
No 134
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=23.63 E-value=1.6e+02 Score=27.50 Aligned_cols=58 Identities=3% Similarity=-0.019 Sum_probs=38.7
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCc--HHHHHHHHHHHcC
Q 015543 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGK--PEKLEALLAAVNN 164 (405)
Q Consensus 107 ~~RIVvFvgSpi~~-d~~~l~~~akkLKkn--nI~VdII~FG~e~~~n--~~~L~~f~~~vn~ 164 (405)
...+|+|+|..... ....+.++.++|++. ++.+.|||-|...... .+.++.+++..+-
T Consensus 183 ~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l 245 (413)
T 3oy2_A 183 DDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGV 245 (413)
T ss_dssp TSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTC
T ss_pred CceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCc
Confidence 46788888885433 555677777776543 6899999988754111 2577888777654
No 135
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=23.14 E-value=1.8e+02 Score=26.30 Aligned_cols=62 Identities=18% Similarity=0.304 Sum_probs=39.4
Q ss_pred eEEEEEecCCCCCCh-------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 108 QRIIVFAGSPVKYDR-------KVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~-------~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
++-|.++||....++ ....++++.|.++++.| |. |... -++.+..+.+-..++.-+.++|..
T Consensus 23 m~~IaV~Gss~~~~~~~~~~~~~~A~~lg~~LA~~G~~v--Vs-Gg~~----GiM~aa~~gAl~~GG~~iGVlP~e 91 (195)
T 1rcu_A 23 MKKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLV--FN-GGRD----GVMELVSQGVREAGGTVVGILPDE 91 (195)
T ss_dssp CCEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTTCEE--EE-CCSS----HHHHHHHHHHHHTTCCEEEEESTT
T ss_pred CCeEEEEecCCCCCccccHHHHHHHHHHHHHHHHCCCEE--Ee-CCHH----HHHHHHHHHHHHcCCcEEEEeCCc
Confidence 344666676533333 56778999999999854 33 4333 388888877765555566666653
No 136
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=22.86 E-value=62 Score=29.15 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=29.2
Q ss_pred eEEEEEecCCCC-C-ChhHHHHHHHHHHhC-CceEEEEEeCCC
Q 015543 108 QRIIVFAGSPVK-Y-DRKVMEMIGKKLKKN-SVAIDIVNFGED 147 (405)
Q Consensus 108 ~RIVvFvgSpi~-~-d~~~l~~~akkLKkn-nI~VdII~FG~e 147 (405)
++|+++.|||.. . +..-...+++.|++. ++.|.+|.+.+.
T Consensus 2 mkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~ 44 (242)
T 1sqs_A 2 NKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNS 44 (242)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTC
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcccC
Confidence 378999999974 2 344445567778777 999999988753
No 137
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=22.83 E-value=70 Score=28.50 Aligned_cols=34 Identities=9% Similarity=0.143 Sum_probs=25.8
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~ 143 (405)
+||++.+.+.+.. - ....+++.|++.++.|++|-
T Consensus 6 k~IllgvTGs~aa-~-k~~~ll~~L~~~g~~V~vv~ 39 (175)
T 3qjg_A 6 ENVLICLCGSVNS-I-NISHYIIELKSKFDEVNVIA 39 (175)
T ss_dssp CEEEEEECSSGGG-G-GHHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEEEeCHHHH-H-HHHHHHHHHHHCCCEEEEEE
Confidence 6787777666543 2 36788999999999999874
No 138
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=22.76 E-value=1.2e+02 Score=26.00 Aligned_cols=34 Identities=9% Similarity=0.328 Sum_probs=24.9
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhC-CceEEEEEeCC
Q 015543 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKN-SVAIDIVNFGE 146 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d~~~l~~~akkLKkn-nI~VdII~FG~ 146 (405)
--.+||++| .++..-++++|+.. |++|.++||-.
T Consensus 109 ~d~~vLvSg------D~DF~plv~~lr~~~G~~V~v~g~~~ 143 (165)
T 2qip_A 109 VDRVILVSG------DGDFSLLVERIQQRYNKKVTVYGVPR 143 (165)
T ss_dssp CSEEEEECC------CGGGHHHHHHHHHHHCCEEEEEECGG
T ss_pred CCEEEEEEC------ChhHHHHHHHHHHHcCcEEEEEeCCC
Confidence 355666532 23788899999995 99999988854
No 139
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=22.71 E-value=3.2e+02 Score=22.46 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=33.4
Q ss_pred eEEEEEecCCCC--C--ChhHHHHHHHHHHhCCc----eEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 108 QRIIVFAGSPVK--Y--DRKVMEMIGKKLKKNSV----AIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 108 ~RIVvFvgSpi~--~--d~~~l~~~akkLKknnI----~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
+.+||++.++-. | .-..+.++.+++++.+| +|.+|++.... .+.+.++.|++..+
T Consensus 60 k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~-~~~~~~~~~~~~~~ 122 (183)
T 3lwa_A 60 QVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRD-YSRDIAQDFVTDNG 122 (183)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSC-CCHHHHHHHHHHTT
T ss_pred CEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCC-CCHHHHHHHHHHcC
Confidence 345555444421 2 23466788888888888 44555555444 35789999998654
No 140
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=22.55 E-value=2.8e+02 Score=25.30 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=40.3
Q ss_pred eEEEEEecCCCCCCh---hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCC
Q 015543 108 QRIIVFAGSPVKYDR---KVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~---~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g 176 (405)
++|-||.||....++ ....++++.|.++++.| |.=|... -++.+..+..-..++.-+.++|..
T Consensus 14 ~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~~G~~v--VsGGg~~----GiM~aa~~gAl~~GG~tiGVlP~~ 79 (215)
T 2a33_A 14 RRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDL--VYGGGSI----GLMGLVSQAVHDGGRHVIGIIPKT 79 (215)
T ss_dssp SEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEE--EECCCSS----HHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CeEEEEECCCCCCchHHHHHHHHHHHHHHHCCCEE--EECCChh----hHhHHHHHHHHHcCCcEEEEcchH
Confidence 456666577765554 34578899999999754 4322222 278888777766566666667654
No 141
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=22.12 E-value=2.2e+02 Score=23.77 Aligned_cols=40 Identities=13% Similarity=0.231 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHhCCceEEEEE---eCCCCCCcHHHHHHHHHH
Q 015543 122 RKVMEMIGKKLKKNSVAIDIVN---FGEDDDGKPEKLEALLAA 161 (405)
Q Consensus 122 ~~~l~~~akkLKknnI~VdII~---FG~e~~~n~~~L~~f~~~ 161 (405)
-..+.++.++++..++.|-.|+ |+.....+.+.+++|++.
T Consensus 57 ~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~ 99 (180)
T 3kij_A 57 YLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARK 99 (180)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHH
Confidence 3456777888877777666555 233222567889999987
No 142
>1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A*
Probab=21.99 E-value=3.4e+02 Score=22.39 Aligned_cols=65 Identities=9% Similarity=-0.012 Sum_probs=39.0
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCCc
Q 015543 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPN 178 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~~ 178 (405)
-+.+|+|.+.... .....+++-+++|-+|.=.....-..+-.+.|.+.+....+..++.++.+.|
T Consensus 138 ~~~~v~~~~~~~~-------~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 202 (236)
T 1zi8_A 138 VDRAVGYYGVGLE-------KQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGH 202 (236)
T ss_dssp SSEEEEESCSSGG-------GCGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHTTCTTEEEEEETTCCT
T ss_pred ccEEEEecCcccc-------cchhhhhhcCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCceEEEECCCCc
Confidence 4566666554322 1223456667787776433332234667788888886544777888886656
No 143
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=21.89 E-value=2e+02 Score=27.50 Aligned_cols=41 Identities=5% Similarity=0.088 Sum_probs=32.0
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
-++|+++.+|+...+..-...+++.|++.++.|.++.+...
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~ 296 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSS 296 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGC
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcC
Confidence 36788888998655666667788888888999999988653
No 144
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=21.73 E-value=75 Score=29.13 Aligned_cols=36 Identities=14% Similarity=-0.099 Sum_probs=26.1
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015543 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~ 143 (405)
.+||++-+.|.+. --+....+++.|++.++.|++|-
T Consensus 5 ~k~IllgiTGsia-ayk~~~~ll~~L~~~g~eV~vv~ 40 (207)
T 3mcu_A 5 GKRIGFGFTGSHC-TYEEVMPHLEKLIAEGAEVRPVV 40 (207)
T ss_dssp TCEEEEEECSCGG-GGTTSHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEEEChHH-HHHHHHHHHHHHHhCCCEEEEEE
Confidence 4678777766542 23336788899999999999874
No 145
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=21.70 E-value=98 Score=27.49 Aligned_cols=40 Identities=8% Similarity=0.127 Sum_probs=29.3
Q ss_pred eEEEEEecCCC--CC--ChhHHHHHHHHHHhC--CceEEEEEeCCC
Q 015543 108 QRIIVFAGSPV--KY--DRKVMEMIGKKLKKN--SVAIDIVNFGED 147 (405)
Q Consensus 108 ~RIVvFvgSpi--~~--d~~~l~~~akkLKkn--nI~VdII~FG~e 147 (405)
++|+++.|||. .. +..-...+++.+++. +..|.+|.+.+.
T Consensus 5 ~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~ 50 (211)
T 3p0r_A 5 TKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKE 50 (211)
T ss_dssp CEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGS
T ss_pred CEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 58999999998 32 233334567778776 899999998864
No 146
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=21.69 E-value=4.2e+02 Score=24.38 Aligned_cols=74 Identities=12% Similarity=0.204 Sum_probs=45.1
Q ss_pred CCCeEEEEEecCCCCC-ChhHHHHHHHHHHhCC-ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEEecCCCchh
Q 015543 105 NQRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNS-VAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNAL 180 (405)
Q Consensus 105 ~~~~RIVvFvgSpi~~-d~~~l~~~akkLKknn-I~VdII~FG~e~~~n~~~L~~f~~~vn~~d~Shlv~vp~g~~lL 180 (405)
....|+|+++.++... ..+.+..+-+.|++.+ |.|.++-.--.. =.+.+..+.+.+....+.-++.+--|+.+|
T Consensus 32 ~~~d~ViLv~~~~~~~~~~~A~~~i~~~l~~~~~i~~e~~~vd~~d--f~~~v~~i~~~i~~~~~~iivnlsGG~Ril 107 (244)
T 2wte_A 32 QKEDSLVIVVPSPIVSGTRAAIESLRAQISRLNYPPPRIYEIEITD--FNLALSKILDIILTLPEPIISDLTMGMRMI 107 (244)
T ss_dssp CTTSEEEEEEESSCCHHHHHHHHHHHHHHHHHTCCCEEEEEECCCS--HHHHHHHHHHHHTTSCSSEEEECSSSCHHH
T ss_pred CCCCEEEEEeCCCcchhHHHHHHHHHHHHHHcCCCceEEEEECCcc--HHHHHHHHHHHHhhcCCcEEEEecCCchHH
Confidence 4567889998887643 3344444445555444 577777664322 244556666666554457777788888654
No 147
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=21.43 E-value=94 Score=29.27 Aligned_cols=42 Identities=2% Similarity=0.015 Sum_probs=32.3
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGED 147 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~e 147 (405)
.++||++++.++... -+.-+..+++.|++.+..|.++.+...
T Consensus 39 ~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~ 81 (416)
T 2x6q_A 39 KGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGP 81 (416)
T ss_dssp TTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred hccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 458888888776332 345667899999999999999988653
No 148
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=21.38 E-value=1.7e+02 Score=26.40 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=37.5
Q ss_pred ccHHHHHHHHHHHhcccCCCCCCeEEEEEecCCCCCChh-----------------HHHHHHHHHHhCCceEEEEEeCC
Q 015543 85 MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRK-----------------VMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~-----------------~l~~~akkLKknnI~VdII~FG~ 146 (405)
.++...+.+.+.++++... ....|| |+++|.....+. -...+++.+.+.+|+|..|.-|.
T Consensus 120 vN~~g~~~l~~~~~~~m~~-~~~g~i-v~isS~~~~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~ 196 (274)
T 3e03_A 120 VNARGSFVCAQACLPHLLQ-APNPHI-LTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRT 196 (274)
T ss_dssp HTHHHHHHHHHHHHHHHTT-SSSCEE-EECCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSB
T ss_pred HhhHhHHHHHHHHHHHHHh-cCCceE-EEECChHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCc
Confidence 4666677777777776432 233455 455665443331 11345677788899999999994
No 149
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=21.15 E-value=1.2e+02 Score=27.60 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=33.2
Q ss_pred cccCCcccHHHH--HHHHHHHhcccCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015543 79 LDIGGEMNIAAG--IQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (405)
Q Consensus 79 l~~~G~~sL~~g--L~iA~lALKhr~~k~~~~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~ 146 (405)
+.++|.+.-..+ |.-.++.|.. . .. +-|+|++.||-.. ...-..+.+.++.-+++|.+++.|-
T Consensus 42 I~l~G~I~~~~a~~i~~~L~~l~~--~-~~-k~I~l~INSPGGs-v~a~~~I~~~i~~~~~pV~t~v~g~ 106 (215)
T 2f6i_A 42 IYLTDEINKKTADELISQLLYLDN--I-NH-NDIKIYINSPGGS-INEGLAILDIFNYIKSDIQTISFGL 106 (215)
T ss_dssp EEECSCBCHHHHHHHHHHHHHHHH--H-CC-SCEEEEEEECCBC-HHHHHHHHHHHHHSSSCEEEEEEEE
T ss_pred EEEccEECHHHHHHHHHHHHHHHh--C-CC-CcEEEEEECCCCC-HHHHHHHHHHHHhcCCCEEEEEeeE
Confidence 355666554333 3333333333 1 23 8899999999654 2233344444455545566655554
No 150
>2lta_A De novo designed protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=26.03 E-value=21 Score=28.93 Aligned_cols=48 Identities=23% Similarity=0.432 Sum_probs=31.7
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 015543 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (405)
Q Consensus 108 ~RIVvFvgSpi~~d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~vn 163 (405)
.+||+++.|. .-.+..+|++.|.++..|+|.--.... ..|+.-+..+.
T Consensus 3 skiiviissd----dttleelarkikdeglevyillkdkde----krleekiqklk 50 (110)
T 2lta_A 3 SKIIVIISSD----DTTLEELARKIKDEGLEVYILLKDKDE----KRLEEKIQKLK 50 (110)
Confidence 3566665555 445789999999999999987543322 35555555443
No 151
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=20.15 E-value=34 Score=30.30 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=39.1
Q ss_pred CeEEEEEecCCCCCC-hhHHHHHHHHHHhCCceEE-EEEeCCCCCCc---------HHHHHHHHHHHcCCCCcEEEEecC
Q 015543 107 RQRIIVFAGSPVKYD-RKVMEMIGKKLKKNSVAID-IVNFGEDDDGK---------PEKLEALLAAVNNNDSSHLVHVPT 175 (405)
Q Consensus 107 ~~RIVvFvgSpi~~d-~~~l~~~akkLKknnI~Vd-II~FG~e~~~n---------~~~L~~f~~~vn~~d~Shlv~vp~ 175 (405)
.++|++|+|||.... ...+.+.+.++...++.|. +|.+.+--..+ .+-.+.|.+++..-| .+|.+-|
T Consensus 4 ~mkil~I~GS~r~~s~t~~l~~~~~~~~~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD--~iv~~sP 81 (193)
T 3svl_A 4 KLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQAD--GVVIVTP 81 (193)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHGGGTSCTTEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSS--EEEEEEC
T ss_pred CCEEEEEEccCCCCCHHHHHHHHHHHHccCCCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCC--EEEEEec
Confidence 478999999997542 2233333333445688888 88887522111 234456666665434 5555555
No 152
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=20.13 E-value=1.2e+02 Score=30.95 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=39.0
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 015543 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAA 161 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~-d~~~l~~~akkLKknnI~VdII~FG~e~~~n~~~L~~f~~~ 161 (405)
...-+|+|||..... ....++++.++|++.++.+-++|-|... ....++.+...
T Consensus 325 ~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~--~~~~~~~~~~~ 379 (536)
T 3vue_A 325 RKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKK--FEKLLKSMEEK 379 (536)
T ss_dssp TTSCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHH--HHHHHHHHHHH
T ss_pred CCCcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCch--HHHHHHHHHhh
Confidence 445689999987643 5667888899999999999999988754 23445555443
No 153
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=20.03 E-value=77 Score=28.88 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=25.4
Q ss_pred CCeEEEEEecCCCCCChhHHHHHHHHHHh-CCceEEEEE
Q 015543 106 QRQRIIVFAGSPVKYDRKVMEMIGKKLKK-NSVAIDIVN 143 (405)
Q Consensus 106 ~~~RIVvFvgSpi~~d~~~l~~~akkLKk-nnI~VdII~ 143 (405)
.++||++.+.+.+..- ....+++.|++ .++.|++|-
T Consensus 18 ~~k~IllgvTGsiaa~--k~~~lv~~L~~~~g~~V~vv~ 54 (206)
T 1qzu_A 18 RKFHVLVGVTGSVAAL--KLPLLVSKLLDIPGLEVAVVT 54 (206)
T ss_dssp SSEEEEEEECSSGGGG--THHHHHHHHC---CEEEEEEE
T ss_pred CCCEEEEEEeChHHHH--HHHHHHHHHhcccCCEEEEEE
Confidence 4578888887776532 24788899999 899999883
Done!