BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015548
(405 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35
PE=1 SV=2
Length = 835
Score = 239 bits (609), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 158/374 (42%), Positives = 220/374 (58%), Gaps = 43/374 (11%)
Query: 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIP 75
+V VA+ G+ KS+Y V WA+EKF EG FKLLH+ P ITSVPTP +GN IP
Sbjct: 21 TVVVALSGSSKSKYVVTWAIEKFATEGNVGFKLLHIHPMITSVPTP--------MGNAIP 72
Query: 76 IEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCN 135
I +VRDDV AY+QE W+++ +L P+ + +R+V VEV VIESD+VA AIA+EV +
Sbjct: 73 ISEVRDDVVTAYRQEILWQSEEMLKPYTKLFVRRKVAVEVLVIESDNVAAAIAEEVTRDS 132
Query: 136 INKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVRPSDLGSIGSTK 195
I+++VIG S+ F+ +K ++ S IS +P+FCTVY V KGKLS VRPSD + +
Sbjct: 133 IDRIVIGGSSRSFFS---RKADICSVISALMPNFCTVYVVSKGKLSCVRPSDSDGNATIR 189
Query: 196 DDSSDTGCSNSSSSSHNSSSQTDLGSAVASYTHSSSPSLPTQRLQALSAV-NKTLLHLKP 254
+D S+ S+S SS S S + SA S S SLP +R+Q A+ + + ++
Sbjct: 190 EDGSERTNSSSGSSGPTSDSSDVMSSAHDS--QSRPLSLPVRRMQHFPAIAGQASVPMET 247
Query: 255 SSTEINHSRCQSFDVEEQKDASSSCLSG--------------PEVRQTVSRSSSYR---- 296
SS + +RC S D EE +D SS S E ++ +S SSS R
Sbjct: 248 SSVGSDETRCMSLDAEEARDVSSINRSSTDTTSRWTPRRRDYEERKEAMSSSSSNREYGN 307
Query: 297 ----------SMETENQDWSDQAST-TDVLPYDSSSESQVDVNFELEKLRIELRHVRGMY 345
++T + S QAS +D L S +++QV++NFE+EKLR ELRHV+ MY
Sbjct: 308 FGTRFSWSGMGVDTTHSRASQQASNMSDALSEQSYTDNQVNLNFEVEKLRAELRHVQEMY 367
Query: 346 AIAQNEANDASRKV 359
A+AQ E DASRK+
Sbjct: 368 AVAQTETFDASRKL 381
>sp|Q9FKG5|PUB51_ARATH U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51
PE=2 SV=2
Length = 796
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 138/356 (38%), Positives = 204/356 (57%), Gaps = 43/356 (12%)
Query: 14 ALSVAVAVKGNR-KSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGN 72
AL VAVA+KGN K++ V WAL++F + +FKLLHV+PR ++ + T
Sbjct: 5 ALIVAVAIKGNNSKTKGVVRWALQEFASQEHVVFKLLHVQPRDSNSVSTTR--------- 55
Query: 73 FIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVA 132
+D + YK++ KT +LLP R+M R V++++ V+ESDD+A AI+ V
Sbjct: 56 -------KDLTTSVYKKDVDRKTREMLLPSRDMFVHREVQLDIMVLESDDIADAISKAVQ 108
Query: 133 SCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVRPSDLGSIG 192
I++LVIGA S IF+WK K++NLSSRI+ P FC+V+ + KGKL +VR SD+ +
Sbjct: 109 DHGISELVIGASSSIIFSWKLKRSNLSSRIADATPRFCSVHVISKGKLLNVRKSDMDTET 168
Query: 193 STKDDSSDTGCSNSSSSSHNSSSQTDLGSAVASYTHSSSPSLPTQRLQALSAVNKTL--- 249
S DD S+ S SS SH+ + S+ +S+ SS+P L QR+QAL+ VN+ +
Sbjct: 169 SIADDRSE---SRFSSDSHSGTV-----SSTSSHQFSSTPLL-FQRIQALTTVNQKVGTN 219
Query: 250 ---LHLKPSSTEINHSRCQSFDVEEQKDASSSCLSGPEVRQTVSRS---SSYRSMETENQ 303
+ +P N R S DV+E K + SS+RS + E
Sbjct: 220 IGKQNNEPHHHHHN--RAGSLDVDESKLLNQKGFYRTSSSGIGYGGSDISSWRSSQME-- 275
Query: 304 DWSDQASTTDVLPYDSSSESQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKV 359
+AS++ +SS SQ+ +FELEKL+IELRH++GMYA+AQ+E DAS+K+
Sbjct: 276 ----EASSSSTYSDPTSSSSQIHKDFELEKLKIELRHIKGMYAVAQSEVIDASKKM 327
>sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52
PE=2 SV=1
Length = 845
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 140/387 (36%), Positives = 211/387 (54%), Gaps = 61/387 (15%)
Query: 17 VAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPI 76
VAVA+ G +KS+Y V WALEKFIPEG FKLL+VRP ++ +PTP +A+ +
Sbjct: 24 VAVAINGKKKSKYVVFWALEKFIPEGFTDFKLLYVRPPVSYIPTPMGIAVA--------V 75
Query: 77 EQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNI 136
++R+DV +AYKQE W + +L P++ M +R+V+VEV +++S + A AIA+E+A +
Sbjct: 76 SELREDVVSAYKQELDWSANEMLRPYKKMFERRKVQVEVLLLDSLEPAAAIAEEIAGTGV 135
Query: 137 NKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVRPSDLGSIGSTKD 196
KLVIG +G F+ +K ++SS I+ VP FCTVY + KGKL+SVRPS+ + GS +
Sbjct: 136 TKLVIGMSLRGFFS---RKIDMSSLIATAVPRFCTVYVISKGKLASVRPSESDASGSIRF 192
Query: 197 DSSDTGCSNSSSSSHNSSSQTDLGSAVASYTHSSSPSLPTQRLQALSAVNKTLLHLKPSS 256
+ S + ++ S Q D SAV+ SP P + S + + + SS
Sbjct: 193 ERSSSTSGSTDSPRLPPEYQ-DFLSAVSEAQSRVSPFSPALKH---SMGSNAVAQMDTSS 248
Query: 257 T-------------EINHSRCQSFDVEEQKDAS--SSCLSGPEVRQTVSRSSSYRSMETE 301
+ EI HS + ++ KD S +S G E ++S +S +R E
Sbjct: 249 SGTDQEEVSTGRGMEIVHSGIEG---KKNKDESFSASFPMGTEAYNSMSWTSKWRDHEDR 305
Query: 302 ---------------NQDW-----------SDQAS--TTDVLPYDSSSESQVDVNFELEK 333
N DW S AS + +L S +++QV++NFE+EK
Sbjct: 306 REMRSSSSSNNHDLVNMDWGAVVPENYSWVSHTASHMSDGLLSVHSITDNQVNLNFEIEK 365
Query: 334 LRIELRHVRGMYAIAQNEANDASRKVS 360
LR EL+HV+ MYA+AQ E AS+K++
Sbjct: 366 LRAELKHVQEMYAMAQTETVGASKKLT 392
>sp|Q9LU47|PUB53_ARATH Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana
GN=PUB53 PE=3 SV=1
Length = 819
Score = 142 bits (357), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 193/378 (51%), Gaps = 54/378 (14%)
Query: 10 PNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHP 69
P+ P ++VA+A+ G+ KS+ + WAL KF + FKL+H+ P+IT++PT +
Sbjct: 28 PSEP-MTVALAISGSIKSKNVIKWALNKFGSDKNVTFKLIHIHPKITTLPTAS------- 79
Query: 70 VGNFIPIEQVRDDVAAAYKQEEKWKTDRLLL-PFRNMCAQR--------------RVEVE 114
GN + I + ++VAAAY+Q+ +T LL PF+ MC ++ +V VE
Sbjct: 80 -GNIVSISEELEEVAAAYRQKVMQETKETLLKPFKKMCERKKLKIDETRFESSLTKVAVE 138
Query: 115 VKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYG 174
++V+ES+ VA AI EV I+ L+IG SQ + + ++++ IS V + CTVY
Sbjct: 139 LQVLESNSVAVAITKEVNQHLISNLIIGRSSQAASSRNY---DITASISASVSNLCTVYV 195
Query: 175 VEKGKLSSVRPSDLGSIGSTKDDSSDTGCSNSSSSS------HNSSSQTDLGSAVASYTH 228
V G + D+SDT +++S S + SS + S V S
Sbjct: 196 VSN-----------GGVHILAKDTSDTERNDTSIESGFERTSSSCSSGSGANSDVMSNAL 244
Query: 229 SSSP-SLPTQRLQALSAVNKTL-LHLKPSSTEINHSRCQSFDVEEQKDASSSCLSGPEVR 286
S+P +L +R+Q L + + + + ++ SSTE + ++ +S D E+ +S S PE
Sbjct: 245 KSNPHTLSNKRMQNLPTIVRGVSVPMETSSTESDETKKRSSDAAEE----ASKRSSPETS 300
Query: 287 QTVSRSSSYRSMETENQDWSDQASTTD----VLPYDSSSESQVDVNFELEKLRIELRHVR 342
++VS + +R + S +S + V P D E+ KLR ELRH
Sbjct: 301 RSVSWNPQFRDFDERKDAMSSMSSNFEYGNVVTPLGHYFTDNQDTLNEISKLRAELRHAH 360
Query: 343 GMYAIAQNEANDASRKVS 360
MYA+AQ E DASRK++
Sbjct: 361 EMYAVAQVETLDASRKLN 378
>sp|Q8GUH1|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33
PE=2 SV=2
Length = 834
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 26 KSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAA 85
KS+ ++WAL+ G L+HV +P +G P+ V+++
Sbjct: 57 KSKSTLIWALQN---TGGKKICLIHVHQPSQMIPL---------MGAKFPVGAVKEEEVR 104
Query: 86 AYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQS 145
++++E+ K +L + +C QR V E IE + + I ++ I KLV+GA +
Sbjct: 105 VFREKEREKVHMILDDYLRICQQRGVRAEKMFIEMESIENGIVQLISELGIRKLVMGAAA 164
Query: 146 QGIFTWKFKKNNLSSRISICV----PSFCTVYGVEKGKLSSVRPSDL 188
++ + +L SR +I V P+ C ++ KG L R + +
Sbjct: 165 DRHYSRRM--TDLKSRKAIFVRREAPTLCQIWFTCKGYLIHTREATM 209
>sp|Q8S8S7|PUB34_ARATH U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34
PE=3 SV=1
Length = 801
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 14/109 (12%)
Query: 15 LSVAVAVKG-------NRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIG 67
L VAVAVKG SR AV WA++ +P+ + F ++HV P ITS+PTP L +
Sbjct: 22 LFVAVAVKGLIGDKLGGAGSRRAVRWAVDNLLPKA-DKFVMIHVIPTITSIPTPNILILM 80
Query: 68 HP------VGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRR 110
G+ +P+E+V + V Y ++ K + + + +PF MC R
Sbjct: 81 FTRMWVVTAGDRLPVEEVEESVVEMYVRDVKKEYETVFVPFLKMCKSTR 129
>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana
GN=PUB55 PE=3 SV=1
Length = 568
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 40/219 (18%)
Query: 17 VAVAVKGN-RKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIP 75
V VAVK + R+SR +LWAL G +LHV T+ P L
Sbjct: 12 VHVAVKSDVRESRSTLLWALRNL---GAKKVCILHVYQPKTASPAARKL----------- 57
Query: 76 IEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRV---EVEVKVIESDDVAKAIADEVA 132
E++ A Y+ L + + C Q V ++ + IE +DV + I + +
Sbjct: 58 -EELE---AIMYE---------TLHDYFDFCQQEGVNEDDIYISCIEMNDVKQGILELIH 104
Query: 133 SCNINKLVIGAQSQGIFTWKFKKNNLSSRISICV----PSFCTVYGVEKGKLSSVRPSDL 188
I KLV+GA S ++ K +L SR + V PS C V + G L + ++L
Sbjct: 105 ESKIKKLVMGAASDHHYSEKM--FDLKSRKAKYVYQHAPSSCEVMFMCDGHLIYTKEANL 162
Query: 189 GS-IGSTKDDSSDTGCSNSSSSSHNSSSQTDLGSAVASY 226
+G T+ ++ + SS+S S+ +L SA+ +Y
Sbjct: 163 EDCMGETESEAGQSKPKLYSSASPKCSA--ELVSAIVAY 199
>sp|Q94A51|PUB32_ARATH U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32
PE=2 SV=1
Length = 805
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 15/173 (8%)
Query: 17 VAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPI 76
VAVA R S+ VLWA F + I L +H R S + + I
Sbjct: 19 VAVAEDVER-SKTTVLWAARNFSGKKICLL-YVHRTARAASWTHKKLVGGSFKKHDVKVI 76
Query: 77 EQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNI 136
E+V EK K D L+ + + ++ ++ + I ++ + I + +A I
Sbjct: 77 ERV-----------EKPKVDELMNSYLQLLSETEIQTDKLCIAGQNIEECIVELIARHKI 125
Query: 137 NKLVIGAQSQGIFTWKFKKNNLSSRISIC--VPSFCTVYGVEKGKLSSVRPSD 187
LV+GA S ++WK I +C P C ++ + KG L R S+
Sbjct: 126 KWLVMGAASDKHYSWKMTDLKSKKAIFVCKKAPDSCHIWFLCKGYLIFTRASN 178
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37
PE=2 SV=1
Length = 400
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 89 QEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGI 148
++EK KT ++L + C Q +V E+ I+ + V K I ++ N+ KLV+GA S
Sbjct: 53 RKEKEKTQKILDKYLQKCRQMQVCAEMIHIKMESVEKGIIQLISERNVKKLVMGAASDTR 112
Query: 149 FTWKFKKNNLSSRISICV----PSFCTVYGVEKGKLSSVRPSDLGS 190
++ + +L S +I + P+ C ++ KG L R S +G+
Sbjct: 113 YSMRM--ADLLSTKAIYIRQEAPATCCIWFTCKGYLVYKRESIMGN 156
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36
PE=2 SV=2
Length = 435
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 84/184 (45%), Gaps = 30/184 (16%)
Query: 1 MEVKDIVELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPT 60
+++ + +E+ + VAV K + +S+ +++WA++ G F ++HV P
Sbjct: 22 IDIPESMEINKKEKIYVAVTEK-DLESKSSLVWAIQN---SGGKEFCIVHVHQ-----PI 72
Query: 61 PTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIES 120
P + + + R + A+K EK + +C Q +V E+ IE+
Sbjct: 73 PGEMFHEQKLRLY------RKEKDKAHKNSEK---------YLQICRQMQVTAEIIYIET 117
Query: 121 DDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICV----PSFCTVYGVE 176
D V K I ++ + KLV+GA + ++ + + +L S+ +I + P+ C ++
Sbjct: 118 DSVEKGILQLISQRGVTKLVMGAAADRHYSMRMR--DLKSKKAIYIHREAPATCLIWFTC 175
Query: 177 KGKL 180
G L
Sbjct: 176 NGYL 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,542,785
Number of Sequences: 539616
Number of extensions: 5495747
Number of successful extensions: 28108
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 23085
Number of HSP's gapped (non-prelim): 2400
length of query: 405
length of database: 191,569,459
effective HSP length: 120
effective length of query: 285
effective length of database: 126,815,539
effective search space: 36142428615
effective search space used: 36142428615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)