Query 015548
Match_columns 405
No_of_seqs 165 out of 1223
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:20:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01989 STK_N The N-terminal d 99.9 6.1E-26 1.3E-30 198.5 18.2 146 16-178 1-146 (146)
2 PRK15456 universal stress prot 99.9 1E-21 2.2E-26 171.9 16.1 139 14-176 2-142 (142)
3 PRK15005 universal stress prot 99.9 3.7E-21 8E-26 167.6 15.7 141 14-176 2-144 (144)
4 PRK09982 universal stress prot 99.8 5.7E-20 1.2E-24 161.8 13.9 139 13-178 2-140 (142)
5 PRK15118 universal stress glob 99.8 5.9E-20 1.3E-24 160.7 13.6 138 13-177 2-139 (144)
6 PF00582 Usp: Universal stress 99.8 6.6E-19 1.4E-23 148.1 16.8 139 14-176 2-140 (140)
7 cd01988 Na_H_Antiporter_C The 99.8 1.2E-18 2.5E-23 148.4 16.3 132 16-176 1-132 (132)
8 cd01987 USP_OKCHK USP domain i 99.8 6.2E-19 1.3E-23 150.0 14.2 124 16-176 1-124 (124)
9 PRK10116 universal stress prot 99.8 2E-18 4.4E-23 150.2 15.3 138 13-177 2-139 (142)
10 PRK11175 universal stress prot 99.8 3.5E-18 7.6E-23 166.9 15.8 146 13-178 2-147 (305)
11 PRK11175 universal stress prot 99.7 8.5E-17 1.8E-21 157.2 15.2 145 13-180 151-303 (305)
12 cd00293 USP_Like Usp: Universa 99.7 1.4E-15 3E-20 126.8 15.6 130 16-175 1-130 (130)
13 COG0589 UspA Universal stress 99.7 7.8E-15 1.7E-19 126.9 17.7 148 12-178 3-153 (154)
14 PRK12652 putative monovalent c 99.4 5.7E-12 1.2E-16 127.8 14.9 110 11-147 2-125 (357)
15 PRK10490 sensor protein KdpD; 99.2 5E-10 1.1E-14 125.9 16.5 128 12-178 248-375 (895)
16 COG2205 KdpD Osmosensitive K+ 99.0 4.9E-09 1.1E-13 113.9 15.6 132 12-180 246-377 (890)
17 cd01984 AANH_like Adenine nucl 97.5 0.00054 1.2E-08 54.8 7.6 51 122-174 35-85 (86)
18 PLN03159 cation/H(+) antiporte 97.0 0.0077 1.7E-07 68.0 12.7 152 11-178 455-617 (832)
19 TIGR02432 lysidine_TilS_N tRNA 96.6 0.039 8.5E-07 50.5 12.1 95 16-147 1-111 (189)
20 cd01992 PP-ATPase N-terminal d 95.4 0.2 4.4E-06 45.3 11.0 95 16-147 1-108 (185)
21 PF01171 ATP_bind_3: PP-loop f 95.1 0.24 5.2E-06 45.4 10.8 93 16-145 1-106 (182)
22 cd01993 Alpha_ANH_like_II This 92.7 1.5 3.3E-05 39.4 11.0 95 16-146 1-117 (185)
23 PRK10696 tRNA 2-thiocytidine b 92.3 2.5 5.4E-05 41.1 12.6 97 11-146 26-142 (258)
24 PLN03159 cation/H(+) antiporte 91.8 5.1 0.00011 45.6 16.0 153 14-179 630-796 (832)
25 COG0037 MesJ tRNA(Ile)-lysidin 89.9 3.7 8E-05 40.1 11.2 39 14-55 21-59 (298)
26 TIGR00268 conserved hypothetic 87.0 7.5 0.00016 37.6 11.1 36 13-53 11-46 (252)
27 PRK13820 argininosuccinate syn 84.6 13 0.00028 38.8 12.0 38 13-53 1-38 (394)
28 PRK12342 hypothetical protein; 83.9 4.7 0.0001 39.6 8.0 88 21-147 31-121 (254)
29 PRK05253 sulfate adenylyltrans 83.2 12 0.00026 37.5 10.8 40 14-54 27-66 (301)
30 cd01990 Alpha_ANH_like_I This 81.9 16 0.00035 33.6 10.5 34 17-54 1-34 (202)
31 TIGR00342 thiazole biosynthesi 79.6 19 0.00041 37.1 11.1 43 6-53 164-206 (371)
32 PRK03359 putative electron tra 77.9 11 0.00024 37.0 8.3 103 22-162 33-138 (256)
33 PF09388 SpoOE-like: Spo0E lik 75.3 1.8 3.8E-05 31.1 1.5 34 326-359 1-34 (45)
34 PRK10660 tilS tRNA(Ile)-lysidi 73.6 22 0.00048 37.4 9.8 42 13-54 14-55 (436)
35 cd01712 ThiI ThiI is required 73.3 65 0.0014 29.0 11.7 34 16-54 1-34 (177)
36 cd01713 PAPS_reductase This do 72.8 52 0.0011 28.4 10.6 36 16-53 1-36 (173)
37 TIGR00591 phr2 photolyase PhrI 72.6 32 0.0007 36.1 10.8 86 27-144 37-122 (454)
38 PLN00200 argininosuccinate syn 70.5 60 0.0013 34.1 12.0 37 14-54 5-41 (404)
39 cd01995 ExsB ExsB is a transcr 69.8 59 0.0013 28.9 10.4 33 16-53 1-33 (169)
40 cd01996 Alpha_ANH_like_III Thi 69.5 64 0.0014 28.1 10.5 33 16-52 3-35 (154)
41 TIGR02039 CysD sulfate adenyly 68.0 71 0.0015 32.1 11.5 40 14-54 19-58 (294)
42 COG2086 FixA Electron transfer 67.5 26 0.00057 34.6 8.1 88 19-146 31-122 (260)
43 PF00875 DNA_photolyase: DNA p 66.7 27 0.00059 31.1 7.6 79 95-181 51-129 (165)
44 cd01986 Alpha_ANH_like Adenine 65.2 48 0.001 27.1 8.3 33 17-54 1-33 (103)
45 TIGR00032 argG argininosuccina 64.7 64 0.0014 33.7 10.8 34 16-54 1-34 (394)
46 PF02887 PK_C: Pyruvate kinase 63.7 13 0.00028 31.5 4.7 49 122-181 3-51 (117)
47 PRK00509 argininosuccinate syn 62.5 1.1E+02 0.0025 32.0 12.2 37 14-54 2-38 (399)
48 PRK14665 mnmA tRNA-specific 2- 62.0 1.1E+02 0.0024 31.5 11.9 37 12-53 3-39 (360)
49 PF12107 VEK-30: Plasminogen ( 60.0 7.6 0.00016 22.4 1.6 10 328-337 2-11 (17)
50 TIGR00289 conserved hypothetic 57.6 1.5E+02 0.0033 28.5 11.3 93 16-146 2-96 (222)
51 TIGR03556 photolyase_8HDF deox 56.7 92 0.002 33.1 10.6 46 96-144 54-99 (471)
52 cd01994 Alpha_ANH_like_IV This 56.6 92 0.002 29.0 9.4 34 16-54 1-34 (194)
53 PRK09722 allulose-6-phosphate 55.3 1.2E+02 0.0026 29.3 10.2 41 102-144 159-199 (229)
54 cd01985 ETF The electron trans 54.5 1.3E+02 0.0029 27.1 10.0 58 123-186 79-138 (181)
55 cd02067 B12-binding B12 bindin 54.4 65 0.0014 27.0 7.4 41 105-147 22-62 (119)
56 TIGR00884 guaA_Cterm GMP synth 53.7 2.3E+02 0.0049 28.6 12.3 36 15-54 17-52 (311)
57 PRK14664 tRNA-specific 2-thiou 52.6 2E+02 0.0043 29.8 11.8 35 13-52 4-38 (362)
58 PF02844 GARS_N: Phosphoribosy 52.2 13 0.00029 31.4 2.7 25 121-145 48-72 (100)
59 PRK04527 argininosuccinate syn 51.9 1.3E+02 0.0028 31.6 10.5 35 15-54 3-37 (400)
60 TIGR00273 iron-sulfur cluster- 51.9 42 0.00092 35.4 7.0 60 83-144 37-97 (432)
61 PRK08745 ribulose-phosphate 3- 51.1 1.3E+02 0.0028 28.9 9.7 39 104-144 163-201 (223)
62 TIGR02765 crypto_DASH cryptoch 51.1 1E+02 0.0022 32.0 9.7 47 95-144 59-105 (429)
63 TIGR01162 purE phosphoribosyla 50.9 70 0.0015 29.3 7.3 68 99-177 14-84 (156)
64 PF04822 Takusan: Takusan; In 50.5 20 0.00043 29.4 3.4 23 319-342 10-32 (84)
65 PRK14057 epimerase; Provisiona 50.3 1.5E+02 0.0032 29.2 10.0 40 104-145 185-224 (254)
66 COG1606 ATP-utilizing enzymes 49.6 2.2E+02 0.0047 28.4 10.8 36 15-54 18-53 (269)
67 COG2102 Predicted ATPases of P 47.8 2.2E+02 0.0048 27.6 10.5 93 16-145 2-96 (223)
68 PRK01269 tRNA s(4)U8 sulfurtra 47.7 2.4E+02 0.0052 30.1 12.0 44 6-54 169-212 (482)
69 cd01997 GMP_synthase_C The C-t 47.0 2.7E+02 0.0059 27.8 11.6 35 16-54 1-35 (295)
70 PRK05370 argininosuccinate syn 47.0 2.9E+02 0.0064 29.5 12.2 32 123-154 110-141 (447)
71 PF07795 DUF1635: Protein of u 46.8 19 0.00041 34.5 3.1 35 325-359 22-56 (214)
72 PF00731 AIRC: AIR carboxylase 46.0 74 0.0016 28.9 6.7 68 99-177 16-86 (150)
73 PF01012 ETF: Electron transfe 43.9 2.3E+02 0.005 25.0 10.2 112 25-185 15-136 (164)
74 PRK00919 GMP synthase subunit 42.7 3.2E+02 0.007 27.5 11.4 36 15-54 22-57 (307)
75 PRK14561 hypothetical protein; 42.5 2.7E+02 0.0059 25.8 10.2 32 15-52 1-32 (194)
76 TIGR03573 WbuX N-acetyl sugar 41.7 2.4E+02 0.0052 28.6 10.4 25 122-146 147-171 (343)
77 PRK01565 thiamine biosynthesis 41.5 4E+02 0.0086 27.6 12.2 43 6-53 168-210 (394)
78 PF05582 Peptidase_U57: YabG p 41.2 67 0.0015 32.2 6.1 49 97-145 116-164 (287)
79 TIGR02855 spore_yabG sporulati 40.9 74 0.0016 31.8 6.2 48 98-145 116-163 (283)
80 COG0041 PurE Phosphoribosylcar 40.8 1E+02 0.0022 28.3 6.6 48 102-149 21-71 (162)
81 TIGR00364 exsB protein. This p 40.2 3E+02 0.0064 25.3 10.5 31 17-52 1-31 (201)
82 PF04007 DUF354: Protein of un 40.1 50 0.0011 33.7 5.2 82 98-184 15-97 (335)
83 PRK00074 guaA GMP synthase; Re 39.6 2.3E+02 0.0049 30.6 10.4 36 15-54 216-251 (511)
84 PF00448 SRP54: SRP54-type pro 39.5 2.6E+02 0.0055 26.0 9.5 114 16-175 4-120 (196)
85 PRK11914 diacylglycerol kinase 39.3 1.5E+02 0.0033 29.1 8.5 65 104-178 33-97 (306)
86 PF08053 Tna_leader: Tryptopha 39.0 28 0.0006 21.4 1.9 20 382-401 1-22 (24)
87 PRK00143 mnmA tRNA-specific 2- 38.7 2.4E+02 0.0051 28.8 9.9 35 15-54 1-35 (346)
88 PRK08091 ribulose-phosphate 3- 37.2 70 0.0015 31.0 5.4 39 104-144 171-209 (228)
89 PF02310 B12-binding: B12 bind 36.8 2E+02 0.0044 23.6 7.7 39 105-145 23-61 (121)
90 PRK08576 hypothetical protein; 36.8 2.7E+02 0.0058 29.7 10.1 33 15-52 235-267 (438)
91 PRK02261 methylaspartate mutas 36.5 1.8E+02 0.0039 25.6 7.6 41 105-147 26-66 (137)
92 PRK12563 sulfate adenylyltrans 36.4 3.3E+02 0.0071 27.7 10.3 40 14-54 37-76 (312)
93 PRK09806 tryptophanase leader 36.3 34 0.00073 21.4 2.0 20 382-401 1-22 (26)
94 cd02071 MM_CoA_mut_B12_BD meth 35.9 1.6E+02 0.0035 25.0 7.0 40 105-146 22-61 (122)
95 PRK08349 hypothetical protein; 35.8 3.5E+02 0.0076 24.8 11.0 34 15-53 1-34 (198)
96 TIGR00640 acid_CoA_mut_C methy 35.6 97 0.0021 27.2 5.7 58 105-167 25-82 (132)
97 TIGR00290 MJ0570_dom MJ0570-re 35.5 4.1E+02 0.0089 25.5 10.9 35 16-55 2-36 (223)
98 TIGR03183 DNA_S_dndC putative 35.4 3.5E+02 0.0076 28.9 10.7 76 15-119 14-91 (447)
99 PRK11106 queuosine biosynthesi 34.8 2.5E+02 0.0054 27.1 8.9 35 15-54 2-36 (231)
100 PRK13054 lipid kinase; Reviewe 33.7 2.4E+02 0.0053 27.7 8.9 67 105-178 26-93 (300)
101 PRK13337 putative lipid kinase 33.4 1.9E+02 0.0041 28.5 8.0 68 103-178 25-92 (304)
102 TIGR00420 trmU tRNA (5-methyla 33.4 5.4E+02 0.012 26.3 11.8 33 15-52 1-33 (352)
103 cd01998 tRNA_Me_trans tRNA met 32.8 4.9E+02 0.011 26.5 11.1 34 16-54 1-34 (349)
104 PF03746 LamB_YcsF: LamB/YcsF 32.4 3.3E+02 0.0071 26.7 9.2 56 90-145 81-145 (242)
105 cd01999 Argininosuccinate_Synt 32.3 4.1E+02 0.0089 27.7 10.5 34 17-54 1-34 (385)
106 PRK00109 Holliday junction res 31.7 73 0.0016 28.2 4.3 22 123-144 42-63 (138)
107 PF13167 GTP-bdg_N: GTP-bindin 31.6 2.3E+02 0.0049 23.7 6.9 49 95-143 6-65 (95)
108 cd03364 TOPRIM_DnaG_primases T 30.5 1.1E+02 0.0023 23.9 4.7 30 14-43 43-72 (79)
109 KOG2991 Splicing regulator [RN 30.4 52 0.0011 32.6 3.3 27 326-352 174-200 (330)
110 PRK08384 thiamine biosynthesis 30.3 6.4E+02 0.014 26.2 11.9 42 6-52 172-213 (381)
111 TIGR00250 RNAse_H_YqgF RNAse H 30.1 1.4E+02 0.0029 26.2 5.7 53 121-177 34-91 (130)
112 COG1597 LCB5 Sphingosine kinas 29.8 1.3E+02 0.0028 30.0 6.2 74 96-178 19-92 (301)
113 COG0415 PhrB Deoxyribodipyrimi 29.1 3.5E+02 0.0075 29.1 9.4 47 96-145 54-100 (461)
114 COG0036 Rpe Pentose-5-phosphat 28.6 1.3E+02 0.0028 29.1 5.6 25 120-144 175-199 (220)
115 PRK13848 conjugal transfer pro 28.4 49 0.0011 27.7 2.4 17 325-341 6-22 (98)
116 KOG2749 mRNA cleavage and poly 28.2 4.2E+02 0.009 27.8 9.4 66 110-187 214-282 (415)
117 cd02072 Glm_B12_BD B12 binding 28.2 2E+02 0.0044 25.3 6.4 39 105-145 22-60 (128)
118 PF01902 ATP_bind_4: ATP-bindi 27.9 5.4E+02 0.012 24.6 10.0 93 16-146 2-96 (218)
119 PF11215 DUF3010: Protein of u 27.9 1.2E+02 0.0026 27.3 4.9 49 126-178 52-103 (138)
120 PF02601 Exonuc_VII_L: Exonucl 27.4 1.7E+02 0.0036 29.1 6.6 47 117-164 50-105 (319)
121 PRK10674 deoxyribodipyrimidine 26.5 5.1E+02 0.011 27.5 10.3 47 96-144 56-105 (472)
122 TIGR00511 ribulose_e2b2 ribose 26.4 2.3E+02 0.005 28.4 7.3 61 107-178 163-226 (301)
123 PRK13055 putative lipid kinase 26.1 3E+02 0.0065 27.6 8.1 72 99-178 22-94 (334)
124 PF01008 IF-2B: Initiation fac 26.0 1.3E+02 0.0027 29.3 5.3 61 108-178 156-219 (282)
125 TIGR01501 MthylAspMutase methy 26.0 2.2E+02 0.0048 25.2 6.3 69 105-180 24-92 (134)
126 PF06508 QueC: Queuosine biosy 25.4 4.1E+02 0.0089 25.0 8.5 34 16-54 1-34 (209)
127 PF00834 Ribul_P_3_epim: Ribul 25.3 40 0.00087 31.8 1.6 43 99-143 153-195 (201)
128 COG1365 Predicted ATPase (PP-l 25.2 1.5E+02 0.0032 28.9 5.2 24 121-144 140-163 (255)
129 PF02142 MGS: MGS-like domain 25.0 49 0.0011 26.9 1.8 40 106-145 26-70 (95)
130 COG0552 FtsY Signal recognitio 24.6 2.4E+02 0.0051 29.1 6.9 50 103-153 187-239 (340)
131 TIGR00147 lipid kinase, YegS/R 24.5 4.7E+02 0.01 25.3 9.0 69 101-178 23-92 (293)
132 KOG1467 Translation initiation 24.5 6.8E+02 0.015 27.3 10.4 68 107-184 407-476 (556)
133 cd08550 GlyDH-like Glycerol_de 24.1 2.1E+02 0.0047 28.8 6.7 42 100-142 39-85 (349)
134 PF14182 YgaB: YgaB-like prote 23.7 1.2E+02 0.0025 24.7 3.6 29 325-353 43-71 (79)
135 PF13362 Toprim_3: Toprim doma 22.8 1.6E+02 0.0034 23.7 4.4 32 12-43 39-72 (96)
136 cd01714 ETF_beta The electron 22.8 1.2E+02 0.0027 28.2 4.4 61 123-186 96-158 (202)
137 cd02070 corrinoid_protein_B12- 22.8 3.7E+02 0.008 24.9 7.5 42 105-148 105-146 (201)
138 COG1139 Uncharacterized conser 22.7 2.5E+02 0.0054 30.0 6.8 91 84-177 52-153 (459)
139 PRK06247 pyruvate kinase; Prov 22.7 1.2E+02 0.0026 32.6 4.6 49 122-181 356-404 (476)
140 PRK05406 LamB/YcsF family prot 22.5 2.3E+02 0.005 27.8 6.2 54 92-145 85-147 (246)
141 TIGR00524 eIF-2B_rel eIF-2B al 22.5 2.2E+02 0.0047 28.7 6.2 63 107-178 175-240 (303)
142 TIGR03702 lip_kinase_YegS lipi 22.4 5E+02 0.011 25.4 8.8 67 105-178 22-89 (293)
143 PF07820 TraC: TraC-like prote 22.4 74 0.0016 26.6 2.4 17 325-341 5-21 (92)
144 TIGR03679 arCOG00187 arCOG0018 22.4 6.6E+02 0.014 23.7 9.9 89 19-146 2-97 (218)
145 cd01422 MGS Methylglyoxal synt 22.1 1.4E+02 0.003 25.5 4.1 34 109-144 44-79 (115)
146 PTZ00323 NAD+ synthase; Provis 22.1 8.1E+02 0.017 24.5 12.2 43 12-54 44-86 (294)
147 PRK00861 putative lipid kinase 22.0 4.6E+02 0.01 25.6 8.5 58 111-178 33-90 (300)
148 COG0137 ArgG Argininosuccinate 21.8 9.6E+02 0.021 25.3 13.2 32 123-154 100-131 (403)
149 PRK09590 celB cellobiose phosp 21.5 1.9E+02 0.004 24.5 4.7 43 99-145 18-60 (104)
150 PRK08535 translation initiatio 21.5 3.1E+02 0.0066 27.6 7.1 61 107-178 168-231 (310)
151 PRK13010 purU formyltetrahydro 21.2 7.1E+02 0.015 24.8 9.6 86 12-145 91-179 (289)
152 smart00857 Resolvase Resolvase 21.1 5.2E+02 0.011 21.9 8.4 72 102-178 24-104 (148)
153 PRK12569 hypothetical protein; 20.8 2.6E+02 0.0056 27.5 6.2 54 92-145 88-150 (245)
154 TIGR01064 pyruv_kin pyruvate k 20.6 1.3E+02 0.0029 32.1 4.5 53 121-184 359-411 (473)
155 PF03358 FMN_red: NADPH-depend 20.5 2.6E+02 0.0057 24.0 5.7 50 96-147 17-82 (152)
156 cd01715 ETF_alpha The electron 20.5 2E+02 0.0043 25.7 5.1 56 123-185 71-126 (168)
157 PF10458 Val_tRNA-synt_C: Valy 20.3 1.4E+02 0.0031 22.8 3.5 23 326-348 1-23 (66)
158 COG5259 RSC8 RSC chromatin rem 20.2 1E+02 0.0022 33.0 3.4 28 325-352 425-452 (531)
159 TIGR02766 crypt_chrom_pln cryp 20.0 6.6E+02 0.014 26.5 9.6 48 95-144 49-96 (475)
160 TIGR00715 precor6x_red precorr 20.0 2.4E+02 0.0051 27.7 5.8 67 105-180 166-234 (256)
No 1
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.94 E-value=6.1e-26 Score=198.47 Aligned_cols=146 Identities=49% Similarity=0.768 Sum_probs=122.6
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHH
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~ 95 (405)
+||||+|+|+.|++|++||++++...+.. +++|||.++....++. .+. .+..+.+.++.+++.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~-l~ll~v~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~ 63 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQT-IVLVHVHPPITSIPSS--------SGK--------LEVASAYKQEEDKEA 63 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCc-EEEEEeccCcccCCCC--------ccc--------hHHHHHHHHHHHHHH
Confidence 59999999999999999999988777665 9999999875322110 010 112334555666778
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEE
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV 175 (405)
+++|+++.+.|...|++++..++++|+|++.|+++|+++++|+||||+||++++.++++|++|+.+|++++|.+|||+||
T Consensus 64 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv 143 (146)
T cd01989 64 KELLLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVV 143 (146)
T ss_pred HHHHHHHHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEE
Confidence 89999999999888999999988867999999999999999999999999999999999866999999999999999999
Q ss_pred eCC
Q 015548 176 EKG 178 (405)
Q Consensus 176 ~kg 178 (405)
++|
T Consensus 144 ~~~ 146 (146)
T cd01989 144 SKG 146 (146)
T ss_pred eCc
Confidence 987
No 2
>PRK15456 universal stress protein UspG; Provisional
Probab=99.88 E-value=1e-21 Score=171.89 Aligned_cols=139 Identities=15% Similarity=0.113 Sum_probs=109.2
Q ss_pred CCeEEEeecCC--HHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHH
Q 015548 14 ALSVAVAVKGN--RKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (405)
Q Consensus 14 ~~kILVAVDgS--~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~ 91 (405)
+++||||+||| +.+..|++||+.++.. .+ ++++|||.++..... .... . . ..+.+.+..
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~-~~-~l~llhv~~~~~~~~----------~~~~--~----~-~~~~~~~~~ 62 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQD-DG-VIHLLHVLPGSASLS----------LHRF--A----A-DVRRFEEHL 62 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhc-CC-eEEEEEEecCccccc----------cccc--c----c-chhhHHHHH
Confidence 68999999999 4899999999998754 45 599999998753110 0100 0 0 112344555
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCce
Q 015548 92 KWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCT 171 (405)
Q Consensus 92 ~~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~ 171 (405)
++..++.|+++.+.+...+++++..+.. |+|++.|+++|+++++||||||+||++ +.++++|| ++.+|+++++ ||
T Consensus 63 ~~~~~~~l~~~~~~~~~~~~~v~~~v~~-G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS-~a~~v~~~a~--~p 137 (142)
T PRK15456 63 QHEAEERLQTMVSHFTIDPSRIKQHVRF-GSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGS-NASSVIRHAN--LP 137 (142)
T ss_pred HHHHHHHHHHHHHHhCCCCcceEEEEcC-CChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCc-cHHHHHHcCC--CC
Confidence 6667777887777665567888877766 899999999999999999999999976 78899998 9999999998 99
Q ss_pred EEEEe
Q 015548 172 VYGVE 176 (405)
Q Consensus 172 VlVV~ 176 (405)
|+||+
T Consensus 138 VLvV~ 142 (142)
T PRK15456 138 VLVVR 142 (142)
T ss_pred EEEeC
Confidence 99984
No 3
>PRK15005 universal stress protein F; Provisional
Probab=99.87 E-value=3.7e-21 Score=167.58 Aligned_cols=141 Identities=12% Similarity=0.090 Sum_probs=105.0
Q ss_pred CCeEEEeecCCHH--HHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHH
Q 015548 14 ALSVAVAVKGNRK--SRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (405)
Q Consensus 14 ~~kILVAVDgS~~--S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~ 91 (405)
+++||||+|||+. +++|++||++.+...+. +++||||.++..... . .+... .... ... ++.
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~-~l~ll~v~~~~~~~~-~--------~~~~~-~~~~--~~~----~~~ 64 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDA-EVHFLTVIPSLPYYA-S--------LGLAY-SAEL--PAM----DDL 64 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCC-eEEEEEEEccCcccc-c--------ccccc-cccc--hHH----HHH
Confidence 6899999999997 58999999998876666 599999998643211 0 01000 0000 011 123
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCce
Q 015548 92 KWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCT 171 (405)
Q Consensus 92 ~~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~ 171 (405)
++..++.|..+.+.+...+++++..+.. |+|++.|+++|+++++|+||||+|+ +++.+.++|| ++.+|++++| ||
T Consensus 65 ~~~~~~~l~~~~~~~~~~~~~~~~~v~~-G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~llGS-~a~~vl~~a~--cp 139 (144)
T PRK15005 65 KAEAKSQLEEIIKKFKLPTDRVHVHVEE-GSPKDRILELAKKIPADMIIIASHR-PDITTYLLGS-NAAAVVRHAE--CS 139 (144)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEeC-CCHHHHHHHHHHHcCCCEEEEeCCC-CCchheeecc-hHHHHHHhCC--CC
Confidence 3444555666555555567778877766 9999999999999999999999994 6789999998 9999999998 99
Q ss_pred EEEEe
Q 015548 172 VYGVE 176 (405)
Q Consensus 172 VlVV~ 176 (405)
|+||+
T Consensus 140 VlvVr 144 (144)
T PRK15005 140 VLVVR 144 (144)
T ss_pred EEEeC
Confidence 99984
No 4
>PRK09982 universal stress protein UspD; Provisional
Probab=99.83 E-value=5.7e-20 Score=161.76 Aligned_cols=139 Identities=15% Similarity=0.157 Sum_probs=103.3
Q ss_pred CCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHH
Q 015548 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK 92 (405)
Q Consensus 13 ~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~ 92 (405)
-+++||||+|||+.|+.|+++|++++...++ +++||||.++..... .+.+.+. .+.+.+..+
T Consensus 2 ~~k~ILvavD~S~~s~~al~~A~~lA~~~~a-~l~llhV~~~~~~~~----------~~~~~~~-------~~~~~~~~~ 63 (142)
T PRK09982 2 AYKHIGVAISGNEEDALLVNKALELARHNDA-HLTLIHIDDGLSELY----------PGIYFPA-------TEDILQLLK 63 (142)
T ss_pred CceEEEEEecCCcchHHHHHHHHHHHHHhCC-eEEEEEEccCcchhc----------hhhhccc-------hHHHHHHHH
Confidence 3789999999999999999999999877666 599999997642111 0111110 112233444
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceE
Q 015548 93 WKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTV 172 (405)
Q Consensus 93 ~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~V 172 (405)
+..++.|.++.+.+.. ..++..+.. |+|++.|+++|++.++||||||+| ++++.+++ | ++.+|+++++ |||
T Consensus 64 ~~~~~~l~~~~~~~~~--~~~~~~v~~-G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~~-~--va~~V~~~s~--~pV 134 (142)
T PRK09982 64 NKSDNKLYKLTKNIQW--PKTKLRIER-GEMPETLLEIMQKEQCDLLVCGHH-HSFINRLM-P--AYRGMINKMS--ADL 134 (142)
T ss_pred HHHHHHHHHHHHhcCC--CcceEEEEe-cCHHHHHHHHHHHcCCCEEEEeCC-hhHHHHHH-H--HHHHHHhcCC--CCE
Confidence 5556667766655432 335555555 999999999999999999999986 88888888 5 9999999998 999
Q ss_pred EEEeCC
Q 015548 173 YGVEKG 178 (405)
Q Consensus 173 lVV~kg 178 (405)
+||+..
T Consensus 135 Lvv~~~ 140 (142)
T PRK09982 135 LIVPFI 140 (142)
T ss_pred EEecCC
Confidence 999764
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.83 E-value=5.9e-20 Score=160.66 Aligned_cols=138 Identities=14% Similarity=0.173 Sum_probs=98.0
Q ss_pred CCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHH
Q 015548 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK 92 (405)
Q Consensus 13 ~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~ 92 (405)
.+++||||+|+|+.+..||+||+.++...++ +++||||.++.... .....+. ....+.++..
T Consensus 2 ~~~~ILvavD~S~~s~~al~~a~~la~~~~a-~l~ll~v~~~~~~~-----------~~~~~~~------~~~~~~~~~~ 63 (144)
T PRK15118 2 AYKHILIAVDLSPESKVLVEKAVSMARPYNA-KVSLIHVDVNYSDL-----------YTGLIDV------NLGDMQKRIS 63 (144)
T ss_pred CceEEEEEccCChhHHHHHHHHHHHHHhhCC-EEEEEEEccChhhh-----------hhhhhhc------chHHHHHHHH
Confidence 5799999999999999999999998876665 59999995432110 0000000 0112223333
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceE
Q 015548 93 WKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTV 172 (405)
Q Consensus 93 ~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~V 172 (405)
+..++.|+. ++...|+.+...++..|+|++.|+++|+++++||||||+|| +++. . +|| ++.+|+++++ |||
T Consensus 64 ~~~~~~l~~---~~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~-~-lgS-va~~v~~~a~--~pV 134 (144)
T PRK15118 64 EETHHALTE---LSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ-DFWS-K-LMS-SARQLINTVH--VDM 134 (144)
T ss_pred HHHHHHHHH---HHHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc-cHHH-H-HHH-HHHHHHhhCC--CCE
Confidence 334444443 34456787655555559999999999999999999999996 3444 3 585 9999999998 999
Q ss_pred EEEeC
Q 015548 173 YGVEK 177 (405)
Q Consensus 173 lVV~k 177 (405)
+||+.
T Consensus 135 Lvv~~ 139 (144)
T PRK15118 135 LIVPL 139 (144)
T ss_pred EEecC
Confidence 99975
No 6
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.82 E-value=6.6e-19 Score=148.14 Aligned_cols=139 Identities=24% Similarity=0.256 Sum_probs=100.7
Q ss_pred CCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHH
Q 015548 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKW 93 (405)
Q Consensus 14 ~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~ 93 (405)
+++||||+|+++.++.|++||+.++...++ ++++|||.++....+ .............. +
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~-~i~~l~v~~~~~~~~----------------~~~~~~~~~~~~~~---~ 61 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGA-EITLLHVIPPPPQYS----------------FSAAEDEESEEEAE---E 61 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTC-EEEEEEEEESCHCHH----------------HHHHHHHHHHHHHH---H
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCC-eEEEEEeeccccccc----------------cccccccccccccc---h
Confidence 589999999999999999999999887666 599999999863211 00000000111111 1
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEE
Q 015548 94 KTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVY 173 (405)
Q Consensus 94 ~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~Vl 173 (405)
.... .......+...+.......+..|++++.|+++++++++|+||||+++++++.++++|+ ++.+|++++| |||+
T Consensus 62 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs-~~~~l~~~~~--~pVl 137 (140)
T PF00582_consen 62 EEQA-RQAEAEEAEAEGGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGS-VAEKLLRHAP--CPVL 137 (140)
T ss_dssp HHHH-HHHHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHH-HHHHHHHHTS--SEEE
T ss_pred hhhh-hhHHHHHHhhhccceeEEEEEeeccchhhhhccccccceeEEEeccCCCCccCCCcCC-HHHHHHHcCC--CCEE
Confidence 1111 1111033334455555555666999999999999999999999999999999999997 9999999998 9999
Q ss_pred EEe
Q 015548 174 GVE 176 (405)
Q Consensus 174 VV~ 176 (405)
||+
T Consensus 138 vv~ 140 (140)
T PF00582_consen 138 VVP 140 (140)
T ss_dssp EEE
T ss_pred EeC
Confidence 995
No 7
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.81 E-value=1.2e-18 Score=148.42 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=108.9
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHH
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~ 95 (405)
+||||+|+++.++.++++|..++...+. +++++||.++....+ . . . .....+..
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~-~v~ll~v~~~~~~~~----------~------~---~------~~~~~~~~ 54 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNG-EIIPLNVIEVPNHSS----------P------S---Q------LEVNVQRA 54 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCC-eEEEEEEEecCCCCC----------c------c---h------hHHHHHHH
Confidence 5999999999999999999998876555 599999998742110 0 0 0 01122445
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEE
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV 175 (405)
++.++.+.+.+.+.|++++..+..+|++.+.|+++++++++|+||||+++++++.++++|| ++.+|+++++ |||+||
T Consensus 55 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs-~~~~v~~~~~--~pvlvv 131 (132)
T cd01988 55 RKLLRQAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGG-VIDQVLESAP--CDVAVV 131 (132)
T ss_pred HHHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCc-hHHHHHhcCC--CCEEEe
Confidence 6777888888888899998887767899999999999999999999999999999999998 9999999998 999998
Q ss_pred e
Q 015548 176 E 176 (405)
Q Consensus 176 ~ 176 (405)
+
T Consensus 132 ~ 132 (132)
T cd01988 132 K 132 (132)
T ss_pred C
Confidence 4
No 8
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.81 E-value=6.2e-19 Score=150.00 Aligned_cols=124 Identities=19% Similarity=0.164 Sum_probs=100.5
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHH
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~ 95 (405)
+||||+|+++.+++|++||+.++...+.. +++|||.++.. .. . . ++.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~-l~ll~v~~~~~---------------~~--~---~------------~~~ 47 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAP-WYVVYVETPRL---------------NR--L---S------------EAE 47 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCC-EEEEEEecCcc---------------cc--C---C------------HHH
Confidence 59999999999999999999988776665 99999997631 00 0 0 123
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEE
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV 175 (405)
++.|+.+++.+++.++++ .++.+|+++++|+++++++++|+||||+++++++.++++|| ++.+|+++++ .|+|+|+
T Consensus 48 ~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs-~~~~v~~~a~-~~~v~v~ 123 (124)
T cd01987 48 RRRLAEALRLAEELGAEV--VTLPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGS-LVDRLLRRAG-NIDVHIV 123 (124)
T ss_pred HHHHHHHHHHHHHcCCEE--EEEeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhccc-HHHHHHHhCC-CCeEEEe
Confidence 445666666666666654 34556899999999999999999999999999999999998 9999999992 4999998
Q ss_pred e
Q 015548 176 E 176 (405)
Q Consensus 176 ~ 176 (405)
.
T Consensus 124 ~ 124 (124)
T cd01987 124 A 124 (124)
T ss_pred C
Confidence 3
No 9
>PRK10116 universal stress protein UspC; Provisional
Probab=99.79 E-value=2e-18 Score=150.21 Aligned_cols=138 Identities=12% Similarity=0.095 Sum_probs=105.2
Q ss_pred CCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHH
Q 015548 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK 92 (405)
Q Consensus 13 ~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~ 92 (405)
.+++||||+|+++.+..||++|++++...+. +++++||.++.... .+ + .....+.+.+..+
T Consensus 2 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a-~l~ll~v~~~~~~~-----------~~--~-----~~~~~~~~~~~~~ 62 (142)
T PRK10116 2 SYSNILVAVAVTPESQQLLAKAVSIARPVNG-KISLITLASDPEMY-----------NQ--F-----AAPMLEDLRSVMQ 62 (142)
T ss_pred CCceEEEEccCCcchHHHHHHHHHHHHHhCC-EEEEEEEccCcccc-----------hh--h-----hHHHHHHHHHHHH
Confidence 5899999999999999999999999876666 59999998764211 01 0 0112233444444
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceE
Q 015548 93 WKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTV 172 (405)
Q Consensus 93 ~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~V 172 (405)
++.+++|+.+ +...|++.+..++..|++.+.|+++|++.++||||||+|+++++.+.+ + ++.+|+++++ |||
T Consensus 63 ~~~~~~l~~~---~~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~--s-~a~~v~~~~~--~pV 134 (142)
T PRK10116 63 EETQSFLDKL---IQDADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRAS--C-SAKRVIASSE--VDV 134 (142)
T ss_pred HHHHHHHHHH---HHhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHHH--H-HHHHHHhcCC--CCE
Confidence 5555555554 345677765555566999999999999999999999999999888864 5 8999999998 999
Q ss_pred EEEeC
Q 015548 173 YGVEK 177 (405)
Q Consensus 173 lVV~k 177 (405)
|||+-
T Consensus 135 Lvv~~ 139 (142)
T PRK10116 135 LLVPL 139 (142)
T ss_pred EEEeC
Confidence 99974
No 10
>PRK11175 universal stress protein UspE; Provisional
Probab=99.78 E-value=3.5e-18 Score=166.93 Aligned_cols=146 Identities=14% Similarity=0.064 Sum_probs=114.9
Q ss_pred CCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHH
Q 015548 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK 92 (405)
Q Consensus 13 ~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~ 92 (405)
.+++||||+|+|+.+..|++||+.++...+.. +++|||.++... +.+ +.. ..+.....++...
T Consensus 2 ~~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~-l~ll~v~~~~~~-~~~---------~~~------~~~~~~~~~~~~~ 64 (305)
T PRK11175 2 KYQNILVVIDPNQDDQPALRRAVYLAQRNGGK-ITAFLPIYDFSY-EMT---------TLL------SPDEREAMRQGVI 64 (305)
T ss_pred CcceEEEEcCCCccccHHHHHHHHHHHhcCCC-EEEEEeccCchh-hhh---------ccc------chhHHHHHHHHHH
Confidence 47899999999999999999999988777665 999999865321 100 110 0111222333334
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceE
Q 015548 93 WKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTV 172 (405)
Q Consensus 93 ~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~V 172 (405)
++.++.|+.+...+...|++++..+...|++.++|+++|+++++|+||||++|++++.+.++|| ++.+|++++| |||
T Consensus 65 ~~~~~~l~~~~~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs-~~~~l~~~~~--~pv 141 (305)
T PRK11175 65 SQRTAWIREQAKPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTP-TDWHLLRKCP--CPV 141 (305)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccCh-hHHHHHhcCC--CCE
Confidence 4456677777777777899988877756999999999999999999999999999999999997 9999999998 999
Q ss_pred EEEeCC
Q 015548 173 YGVEKG 178 (405)
Q Consensus 173 lVV~kg 178 (405)
|||+.+
T Consensus 142 lvv~~~ 147 (305)
T PRK11175 142 LMVKDQ 147 (305)
T ss_pred EEeccc
Confidence 999874
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.72 E-value=8.5e-17 Score=157.20 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=103.3
Q ss_pred CCCeEEEeecCCHH-------HHHHHHHHHHHhccC-CCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHH
Q 015548 13 PALSVAVAVKGNRK-------SRYAVLWALEKFIPE-GINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVA 84 (405)
Q Consensus 13 ~~~kILVAVDgS~~-------S~~AL~wAl~~a~~~-g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~ 84 (405)
++++||||+|+++. +..|+++|++.+... +. +++||||.+...... ... ++. ...
T Consensus 151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a-~l~ll~v~~~~~~~~----------~~~-~~~--~~~--- 213 (305)
T PRK11175 151 EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHA-EVHLVNAYPVTPINI----------AIE-LPE--FDP--- 213 (305)
T ss_pred CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCC-ceEEEEEecCcchhc----------ccc-ccc--cch---
Confidence 57899999999865 368999999988766 55 499999987542100 000 110 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhh
Q 015548 85 AAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISI 164 (405)
Q Consensus 85 ~~~~~e~~~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk 164 (405)
..+.+..++...+.+..+ ++..++..+...+..|++.+.|+++|+++++|+||||++|++++.++|+|| ++.+|++
T Consensus 214 ~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS-~a~~v~~ 289 (305)
T PRK11175 214 SVYNDAIRGQHLLAMKAL---RQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGN-TAEHVID 289 (305)
T ss_pred hhHHHHHHHHHHHHHHHH---HHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecc-hHHHHHh
Confidence 122233333333344443 334466654334445999999999999999999999999999999999998 9999999
Q ss_pred hCCCCceEEEEeCCcc
Q 015548 165 CVPSFCTVYGVEKGKL 180 (405)
Q Consensus 165 ~ap~~C~VlVV~kgk~ 180 (405)
++| |||+||+..+.
T Consensus 290 ~~~--~pVLvv~~~~~ 303 (305)
T PRK11175 290 HLN--CDLLAIKPDGY 303 (305)
T ss_pred cCC--CCEEEEcCCCC
Confidence 998 99999976543
No 12
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.68 E-value=1.4e-15 Score=126.79 Aligned_cols=130 Identities=26% Similarity=0.322 Sum_probs=107.5
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHH
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~ 95 (405)
+||||+|+++.+..+++||.+.+...+. +++++||.++....+ . .+.+....+.
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~-~i~~l~v~~~~~~~~----------------~---------~~~~~~~~~~ 54 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGA-ELVLLHVVDPPPSSA----------------A---------ELAELLEEEA 54 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCC-EEEEEEEecCCCCcc----------------h---------hHHHHHHHHH
Confidence 5899999999999999999999987655 599999987642100 0 1122334556
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEE
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV 175 (405)
++.|+.+...|...|++++..+.. |+++++|.+++++.++|+||||+++++.+.+.+.|+ ++.++++.++ |||++|
T Consensus 55 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~-~~~~ll~~~~--~pvliv 130 (130)
T cd00293 55 RALLEALREALAEAGVKVETVVLE-GDPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGS-VAERVLRHAP--CPVLVV 130 (130)
T ss_pred HHHHHHHHHHHhcCCCceEEEEec-CCCHHHHHHHHHHcCCCEEEEcCCCCCccceeeecc-HHHHHHhCCC--CCEEeC
Confidence 778888888887789998888765 788999999999999999999999999999999997 9999999987 999975
No 13
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.65 E-value=7.8e-15 Score=126.85 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=114.3
Q ss_pred CCCCeEEEeec-CCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHH
Q 015548 12 SPALSVAVAVK-GNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQE 90 (405)
Q Consensus 12 ~~~~kILVAVD-gS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e 90 (405)
..+++|++++| +++.++.|+.+|+..+...+.. +.++||.+........ .... .. . ........
T Consensus 3 ~~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~-~~~~~v~~~~~~~~~~--------~~~~---~~--~-~~~~~~~~ 67 (154)
T COG0589 3 AMYKKILVAVDVGSEAAEKALEEAVALAKRLGAP-LILLVVIDPLEPTALV--------SVAL---AD--A-PIPLSEEE 67 (154)
T ss_pred cccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCe-EEEEEEeccccccccc--------cccc---cc--c-hhhhhHHH
Confidence 35789999999 9999999999999988776665 9999999876432211 0000 00 0 01112233
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcE-EEEEEecCCH-HHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCC
Q 015548 91 EKWKTDRLLLPFRNMCAQRRVEV-EVKVIESDDV-AKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPS 168 (405)
Q Consensus 91 ~~~~~~~~L~~~~~~~~~~gV~v-e~vvle~Gd~-aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~ 168 (405)
......+.+...++...+.|+.. +..+.+ |++ .+.|++++.+.++|+||||++|++++.+.++|| ++++|+++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGs-vs~~v~~~~~- 144 (154)
T COG0589 68 LEEEAEELLAEAKALAEAAGVPVVETEVVE-GSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGS-VAEKVLRHAP- 144 (154)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEEEec-CCCcHHHHHHHHHHhCCCEEEECCCCCccccceeeeh-hHHHHHhcCC-
Confidence 44566778888888888888884 666666 788 799999999999999999999999999999997 9999999998
Q ss_pred CceEEEEeCC
Q 015548 169 FCTVYGVEKG 178 (405)
Q Consensus 169 ~C~VlVV~kg 178 (405)
|||++|+..
T Consensus 145 -~pVlvv~~~ 153 (154)
T COG0589 145 -CPVLVVRSE 153 (154)
T ss_pred -CCEEEEccC
Confidence 999999753
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.39 E-value=5.7e-12 Score=127.82 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=79.7
Q ss_pred CCCCCeEEEeecCCHHHHHHHHHHHHHhccCC-CCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHH
Q 015548 11 NSPALSVAVAVKGNRKSRYAVLWALEKFIPEG-INLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQ 89 (405)
Q Consensus 11 ~~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g-~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~ 89 (405)
.+.+++||||+|||+.|++|+++|++++...+ +.++++|||.+.....+ + . .
T Consensus 2 ~~~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~-----------~----~----~-------- 54 (357)
T PRK12652 2 MMAANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP-----------E----G----Q-------- 54 (357)
T ss_pred CcccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc-----------c----h----h--------
Confidence 45789999999999999999999999987643 45699999998642110 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHhh------hcCCcEEEEEEec-------CCHHHHHHHHHHhCCCCEEEEccCCCC
Q 015548 90 EEKWKTDRLLLPFRNMCA------QRRVEVEVKVIES-------DDVAKAIADEVASCNINKLVIGAQSQG 147 (405)
Q Consensus 90 e~~~~~~~~L~~~~~~~~------~~gV~ve~vvle~-------Gd~aeaIvd~A~e~~aDlIVmGs~g~s 147 (405)
...+..+++++..++.++ ..|++++..++.+ |+|++.|+++|+++++|+||||-.-.-
T Consensus 55 ~~~~~~eelle~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~ 125 (357)
T PRK12652 55 DELAAAEELLERVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNP 125 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 011222333333333333 2699998887763 899999999999999999999988543
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=99.16 E-value=5e-10 Score=125.93 Aligned_cols=128 Identities=15% Similarity=0.135 Sum_probs=100.8
Q ss_pred CCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHH
Q 015548 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (405)
Q Consensus 12 ~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~ 91 (405)
...++|||||++++.+++++++|.++|...++. +++|||.++... . .+.
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~-~~~l~V~~~~~~--------------~------~~~---------- 296 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLAARLGSV-WHAVYVETPRLH--------------R------LPE---------- 296 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHHHhcCCC-EEEEEEecCCcC--------------c------CCH----------
Confidence 456889999999999999999999999887775 999999876310 0 000
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCce
Q 015548 92 KWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCT 171 (405)
Q Consensus 92 ~~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~ 171 (405)
..++.+..+.++|++.|.+ .+.+.++|++++|++||++++++.||||.++++.+ ++.|| ++.++++.++ ..+
T Consensus 297 --~~~~~l~~~~~lA~~lGa~--~~~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--~~~~s-~~~~l~r~~~-~id 368 (895)
T PRK10490 297 --KKRRAILSALRLAQELGAE--TATLSDPAEEKAVLRYAREHNLGKIIIGRRASRRW--WRRES-FADRLARLGP-DLD 368 (895)
T ss_pred --HHHHHHHHHHHHHHHcCCE--EEEEeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--ccCCC-HHHHHHHhCC-CCC
Confidence 1122344444578777866 44567789999999999999999999999999876 44676 9999999997 589
Q ss_pred EEEEeCC
Q 015548 172 VYGVEKG 178 (405)
Q Consensus 172 VlVV~kg 178 (405)
|+||+..
T Consensus 369 i~iv~~~ 375 (895)
T PRK10490 369 LVIVALD 375 (895)
T ss_pred EEEEeCC
Confidence 9999754
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.02 E-value=4.9e-09 Score=113.94 Aligned_cols=132 Identities=21% Similarity=0.151 Sum_probs=109.7
Q ss_pred CCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHH
Q 015548 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (405)
Q Consensus 12 ~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~ 91 (405)
....+|||||++++.+...+++|.+.|.+.+++ ++.|||..+... +.
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~-~~av~v~~~~~~-------------~~------------------- 292 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASRLHAK-WTAVYVETPELH-------------RL------------------- 292 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHHhCCC-eEEEEEeccccc-------------cc-------------------
Confidence 455899999999999999999999999888776 999999987531 10
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCce
Q 015548 92 KWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCT 171 (405)
Q Consensus 92 ~~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~ 171 (405)
.+..++.|....+++++-| ++.+.+.++|++++|++||+.++++.||||.+.++.+.+.|.|+ .+.++++..+ ..+
T Consensus 293 ~~~~~~~l~~~~~Lae~lG--ae~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~-l~~~L~~~~~-~id 368 (890)
T COG2205 293 SEKEARRLHENLRLAEELG--AEIVTLYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGS-LADRLAREAP-GID 368 (890)
T ss_pred cHHHHHHHHHHHHHHHHhC--CeEEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhccc-HHHHHHhcCC-Cce
Confidence 0122456777777888767 55566778999999999999999999999999999999999997 9999999987 589
Q ss_pred EEEEeCCcc
Q 015548 172 VYGVEKGKL 180 (405)
Q Consensus 172 VlVV~kgk~ 180 (405)
|++|+.+..
T Consensus 369 v~ii~~~~~ 377 (890)
T COG2205 369 VHIVALDAP 377 (890)
T ss_pred EEEeeCCCC
Confidence 999977544
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=97.46 E-value=0.00054 Score=54.79 Aligned_cols=51 Identities=6% Similarity=0.061 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEE
Q 015548 122 DVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYG 174 (405)
Q Consensus 122 d~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlV 174 (405)
...+.+.++++++++++|++|.++.......+.|.+++.++.+.++ |+|+.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~--~~vl~ 85 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRLGASANVLVVIKGAG--IPVLT 85 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCchhhhhhcccccC--CceeC
Confidence 4566777888889999999999998888887877227788888876 88763
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=96.95 E-value=0.0077 Score=67.99 Aligned_cols=152 Identities=14% Similarity=0.180 Sum_probs=89.7
Q ss_pred CCCCCeEEEeecCCHHHHHHHHHHHHHhc-cCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHH
Q 015548 11 NSPALSVAVAVKGNRKSRYAVLWALEKFI-PEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQ 89 (405)
Q Consensus 11 ~~~~~kILVAVDgS~~S~~AL~wAl~~a~-~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~ 89 (405)
.....|||+|+-..++-...+..+-.... ++....++++|.++..... .|. .+ ..+........+.
T Consensus 455 ~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~-~~~----------l~-~h~~~~~~~~~~~- 521 (832)
T PLN03159 455 HDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRA-SAM----------LI-VHNTRKSGRPALN- 521 (832)
T ss_pred CCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCC-ccc----------ee-eeecccccccccc-
Confidence 34456999999988887777766532111 2222359999999854211 010 00 0000000000000
Q ss_pred HHHHHHHHHHHHHHHHhhhc-CCcEEEEEE--ecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccc------cccchhhH
Q 015548 90 EEKWKTDRLLLPFRNMCAQR-RVEVEVKVI--ESDDVAKAIADEVASCNINKLVIGAQSQGIFTWK------FKKNNLSS 160 (405)
Q Consensus 90 e~~~~~~~~L~~~~~~~~~~-gV~ve~vvl--e~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~------~lGSsVs~ 160 (405)
+.....++++..++.+.++. +|.++.... ...+..+.||..|++.++++||+|-|.+..+... ..+ .+..
T Consensus 522 ~~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r-~~n~ 600 (832)
T PLN03159 522 RTQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFR-GVNQ 600 (832)
T ss_pred cccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHH-HHHH
Confidence 00112346666666666443 677765543 3358999999999999999999999976443332 233 2779
Q ss_pred HHhhhCCCCceE-EEEeCC
Q 015548 161 RISICVPSFCTV-YGVEKG 178 (405)
Q Consensus 161 ~Vvk~ap~~C~V-lVV~kg 178 (405)
+|+++|| |+| +.|-+|
T Consensus 601 ~VL~~Ap--CsVgIlVDRg 617 (832)
T PLN03159 601 NVLANAP--CSVGILVDRG 617 (832)
T ss_pred HHHccCC--CCEEEEEeCC
Confidence 9999999 887 344445
No 19
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=96.55 E-value=0.039 Score=50.47 Aligned_cols=95 Identities=14% Similarity=0.179 Sum_probs=65.0
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHH
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~ 95 (405)
+|+||+.|...|.-++.++.+.+...+.. +.++||-.... + ..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~-v~~v~vd~g~~--------------~----------------------~~ 43 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIR-LIAAHVDHGLR--------------P----------------------ES 43 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCC-EEEEEeCCCCC--------------h----------------------hH
Confidence 58999999999999998887765444443 88999754320 0 00
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecCC--------HH--------HHHHHHHHhCCCCEEEEccCCCC
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIESDD--------VA--------KAIADEVASCNINKLVIGAQSQG 147 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle~Gd--------~a--------eaIvd~A~e~~aDlIVmGs~g~s 147 (405)
.+..+..+.+|+..|++...+.+.... .. ..+.++|++++++.|+.|.+..-
T Consensus 44 ~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D 111 (189)
T TIGR02432 44 DEEAEFVQQFCKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADD 111 (189)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHH
Confidence 112344455677778887665543221 22 57888999999999999998753
No 20
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=95.36 E-value=0.2 Score=45.33 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=61.8
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHH
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~ 95 (405)
+|+||++|...|.-++.++.+.....+. ++.++|+-.... .. .
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~-~v~~v~id~~~~--------------~~----------------------~ 43 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGL-RLVAVHVDHGLR--------------PE----------------------S 43 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCC-cEEEEEecCCCC--------------ch----------------------H
Confidence 5899999999999999888775543333 499999753320 00 0
Q ss_pred HHHHHHHHHHhhhcCCcEEEE--EEecCC-----------HHHHHHHHHHhCCCCEEEEccCCCC
Q 015548 96 DRLLLPFRNMCAQRRVEVEVK--VIESDD-----------VAKAIADEVASCNINKLVIGAQSQG 147 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~v--vle~Gd-----------~aeaIvd~A~e~~aDlIVmGs~g~s 147 (405)
.+.++...++|+..|++.+.+ ....+. -...+.++|++++++.|+.|.+...
T Consensus 44 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD 108 (185)
T cd01992 44 DEEAAFVADLCAKLGIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADD 108 (185)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHH
Confidence 223334445666678877655 111111 1156778999999999999998653
No 21
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=95.14 E-value=0.24 Score=45.36 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=54.1
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHH
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~ 95 (405)
+|+||+.|.+.|...+....+..... ..++.++||-.... .. +
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~-~~~~~~~~vdh~~~--------------~~----s------------------ 43 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRN-GIKLIAVHVDHGLR--------------EE----S------------------ 43 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTT-TTEEEEEEEE-STS--------------CC----H------------------
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhc-CCCeEEEEEecCCC--------------cc----c------------------
Confidence 69999999999986666665544433 43699999986631 00 0
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEec-----CC---H-----HHHHHHHHHhCCCCEEEEccCC
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIES-----DD---V-----AKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle~-----Gd---~-----aeaIvd~A~e~~aDlIVmGs~g 145 (405)
.+.....+++|+..||+.....+.. .. . .+.+.++|.+++++.|++|-|.
T Consensus 44 ~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 44 DEEAEFVEEICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred chhHHHHHHHHHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 1112333456878888877666541 11 1 1466789999999999999885
No 22
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=92.73 E-value=1.5 Score=39.38 Aligned_cols=95 Identities=16% Similarity=0.086 Sum_probs=57.5
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCC-CCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHH
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEG-INLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWK 94 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g-~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~ 94 (405)
+|+|++.|...|-.++.++.+.....+ +-+++.+|+-.... +.. +
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~--------------~~~-------~------------- 46 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIP--------------GYR-------D------------- 46 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCC--------------CCc-------H-------------
Confidence 589999999999988877766443221 22488888775421 100 0
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEec---------------------CCHHHHHHHHHHhCCCCEEEEccCCC
Q 015548 95 TDRLLLPFRNMCAQRRVEVEVKVIES---------------------DDVAKAIADEVASCNINKLVIGAQSQ 146 (405)
Q Consensus 95 ~~~~L~~~~~~~~~~gV~ve~vvle~---------------------Gd~aeaIvd~A~e~~aDlIVmGs~g~ 146 (405)
+.....+++|...|++...+.... --....+.++|++++++.|+.|.+..
T Consensus 47 --~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~d 117 (185)
T cd01993 47 --ESLEVVERLAEELGIELEIVSFKEEYTDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLD 117 (185)
T ss_pred --HHHHHHHHHHHHcCCceEEEehhhhcchhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChH
Confidence 011222344555666655543320 01234567889999999999998863
No 23
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=92.32 E-value=2.5 Score=41.07 Aligned_cols=97 Identities=10% Similarity=0.100 Sum_probs=60.2
Q ss_pred CCCCCeEEEeecCCHHHHHHHHHHHHHhccCC-CCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHH
Q 015548 11 NSPALSVAVAVKGNRKSRYAVLWALEKFIPEG-INLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQ 89 (405)
Q Consensus 11 ~~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g-~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~ 89 (405)
-.+..+|+||+.|...|...+.++.+.....+ +-++..+||-.... + + ++
T Consensus 26 i~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~--------------~-~------~~-------- 76 (258)
T PRK10696 26 IEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQP--------------G-F------PE-------- 76 (258)
T ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCC--------------C-C------CH--------
Confidence 34678999999999999977777755332222 11477777643210 1 0 00
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEEEEEec----------CC---------HHHHHHHHHHhCCCCEEEEccCCC
Q 015548 90 EEKWKTDRLLLPFRNMCAQRRVEVEVKVIES----------DD---------VAKAIADEVASCNINKLVIGAQSQ 146 (405)
Q Consensus 90 e~~~~~~~~L~~~~~~~~~~gV~ve~vvle~----------Gd---------~aeaIvd~A~e~~aDlIVmGs~g~ 146 (405)
+. .+++|++.||+...+-++. +. -...+.++|++++++.|++|.+.-
T Consensus 77 -------~~---~~~~~~~lgI~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~d 142 (258)
T PRK10696 77 -------HV---LPEYLESLGVPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRD 142 (258)
T ss_pred -------HH---HHHHHHHhCCCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchH
Confidence 01 2457888888876543321 11 113556889999999999999864
No 24
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=91.78 E-value=5.1 Score=45.65 Aligned_cols=153 Identities=17% Similarity=0.163 Sum_probs=78.1
Q ss_pred CCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCC-CCCCcccccccchHHHHHHHHHHH
Q 015548 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGH-PVGNFIPIEQVRDDVAAAYKQEEK 92 (405)
Q Consensus 14 ~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~-~~G~~vp~s~~~~d~~~~~~~e~~ 92 (405)
..+|.+..=|.+.-|.||.+|.+++.. .+..++++|..+......+.. +..+ +-+...|. ..++ .+.++
T Consensus 630 ~~~v~~~F~GG~DDREALa~a~rma~~-p~v~lTVirf~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~-----~~~e~ 699 (832)
T PLN03159 630 SHHVAVLFFGGPDDREALAYAWRMSEH-PGITLTVMRFIPGEDAAPTAS--QPASSPSDPRIPT--VETD-----GKKER 699 (832)
T ss_pred ceeEEEEecCCcchHHHHHHHHHHhcC-CCeEEEEEEEEcccccccccc--ccccccccccccc--cccc-----chhHH
Confidence 458999998888899999999998854 455699999886532111000 0000 00000010 0000 01122
Q ss_pred HHHHHHHHHHHHHhh-hcCCcEEEEEEecCCHHHHHHHHHH-hCCCCEEEEccCCC--C----Cccccc----ccchhhH
Q 015548 93 WKTDRLLLPFRNMCA-QRRVEVEVKVIESDDVAKAIADEVA-SCNINKLVIGAQSQ--G----IFTWKF----KKNNLSS 160 (405)
Q Consensus 93 ~~~~~~L~~~~~~~~-~~gV~ve~vvle~Gd~aeaIvd~A~-e~~aDlIVmGs~g~--s----~l~r~~----lGSsVs~ 160 (405)
+.-++.+.+|+.... ...|.+.+.++. |..+.+...-. ..+.||+|+|++.. + |+.+|. +|- +-.
T Consensus 700 ~~D~~~~~ef~~~~~~~~~v~y~E~~V~--~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~-iGD 776 (832)
T PLN03159 700 QLDEEYINEFRARNAGNESIVYTEKVVS--NGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGA-IGD 776 (832)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEEecC--CHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccch-hhh
Confidence 233556777765443 245666666665 33443322211 22489999998643 2 334433 242 223
Q ss_pred HHhhh-CCCCceEEEEeCCc
Q 015548 161 RISIC-VPSFCTVYGVEKGK 179 (405)
Q Consensus 161 ~Vvk~-ap~~C~VlVV~kgk 179 (405)
.+.-. -.....|+||....
T Consensus 777 ~LaS~d~~~~~SVLVvQQ~~ 796 (832)
T PLN03159 777 LLASSDFAATVSVLVVQQYV 796 (832)
T ss_pred HHhcCCCCCceeEEEEEeec
Confidence 32211 11235689997655
No 25
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=89.88 E-value=3.7 Score=40.08 Aligned_cols=39 Identities=21% Similarity=0.125 Sum_probs=30.3
Q ss_pred CCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCC
Q 015548 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRI 55 (405)
Q Consensus 14 ~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~ 55 (405)
..+|+||+.|.+.|..+|....+... . ..+.++||-...
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~-~--~~~~a~~Vd~~~ 59 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGR-R--IEVEAVHVDHGL 59 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhcc-C--ceEEEEEecCCC
Confidence 58999999999999988776655432 2 359999998764
No 26
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=86.96 E-value=7.5 Score=37.62 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=28.1
Q ss_pred CCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEec
Q 015548 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (405)
Q Consensus 13 ~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (405)
...+|+||+.|...|-.++.++.+. +.. ++.+|+..
T Consensus 11 ~~~~vlVa~SGGvDSs~ll~la~~~----g~~-v~av~~~~ 46 (252)
T TIGR00268 11 EFKKVLIAYSGGVDSSLLAAVCSDA----GTE-VLAITVVS 46 (252)
T ss_pred hcCCEEEEecCcHHHHHHHHHHHHh----CCC-EEEEEecC
Confidence 3578999999999999888887653 443 88888853
No 27
>PRK13820 argininosuccinate synthase; Provisional
Probab=84.56 E-value=13 Score=38.80 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=29.0
Q ss_pred CCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEec
Q 015548 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (405)
Q Consensus 13 ~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (405)
+.++|+||+.|...|-.++.|+.+.+ +-.+++.+|+-.
T Consensus 1 ~~~kVvvA~SGGvDSsvll~lL~e~~---g~~~Viav~vd~ 38 (394)
T PRK13820 1 MMKKVVLAYSGGLDTSVCVPLLKEKY---GYDEVITVTVDV 38 (394)
T ss_pred CCCeEEEEEeCcHHHHHHHHHHHHhc---CCCEEEEEEEEC
Confidence 35799999999999999999986532 211488888863
No 28
>PRK12342 hypothetical protein; Provisional
Probab=83.86 E-value=4.7 Score=39.56 Aligned_cols=88 Identities=17% Similarity=0.087 Sum_probs=54.9
Q ss_pred ecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHH
Q 015548 21 VKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLL 100 (405)
Q Consensus 21 VDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~~~~L~ 100 (405)
...++..++||+-|+++- ..|. ++++|++-|+.. ...+++.
T Consensus 31 ~~iNp~D~~AlE~AlrLk-~~g~-~Vtvls~Gp~~a-------------------------------------~~~~l~r 71 (254)
T PRK12342 31 AKISQFDLNAIEAASQLA-TDGD-EIAALTVGGSLL-------------------------------------QNSKVRK 71 (254)
T ss_pred ccCChhhHHHHHHHHHHh-hcCC-EEEEEEeCCChH-------------------------------------hHHHHHH
Confidence 345788999999999865 5554 588888554410 0011223
Q ss_pred HHHHHhhhcCCcEEEEEEecCCH---HHHHHHHHHhCCCCEEEEccCCCC
Q 015548 101 PFRNMCAQRRVEVEVKVIESDDV---AKAIADEVASCNINKLVIGAQSQG 147 (405)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~Gd~---aeaIvd~A~e~~aDlIVmGs~g~s 147 (405)
.+..+-..+++.+......+.|+ +.+|..++++.++|+|+.|...--
T Consensus 72 ~alamGaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~D 121 (254)
T PRK12342 72 DVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGD 121 (254)
T ss_pred HHHHcCCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCccc
Confidence 33333333333333222234576 899999999999999999988743
No 29
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=83.18 E-value=12 Score=37.54 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=30.0
Q ss_pred CCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 14 ~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
+.+|+|++.|.+.|--.|..|.+.+...+-. +.+|||-..
T Consensus 27 f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~-~~vl~iDTG 66 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLARKAFYPGKLP-FPLLHVDTG 66 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhcccCCC-eeEEEEeCC
Confidence 5689999999999998888886654332333 889998654
No 30
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=81.86 E-value=16 Score=33.64 Aligned_cols=34 Identities=21% Similarity=0.099 Sum_probs=25.7
Q ss_pred EEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 17 VAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 17 ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
|+|++.|...|-.++.++.+... . +++.|||...
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~---~-~v~~v~vd~g 34 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALG---D-RVLAVTATSP 34 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhC---C-cEEEEEeCCC
Confidence 68999999999999888866431 2 3888887533
No 31
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=79.64 E-value=19 Score=37.05 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=33.4
Q ss_pred ccCCCCCCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEec
Q 015548 6 IVELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (405)
Q Consensus 6 ~~~~~~~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (405)
-|++|-....+++|++.|.-.|--|+.++.+ .|. +++.||+..
T Consensus 164 ~gGlP~g~~~kvlvllSGGiDS~vaa~ll~k----rG~-~V~av~~~~ 206 (371)
T TIGR00342 164 IGGLPVGTQGKVLALLSGGIDSPVAAFMMMK----RGC-RVVAVHFFN 206 (371)
T ss_pred CCCcCcCcCCeEEEEecCCchHHHHHHHHHH----cCC-eEEEEEEeC
Confidence 3456777889999999999999988877644 344 499999873
No 32
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=77.89 E-value=11 Score=37.02 Aligned_cols=103 Identities=12% Similarity=0.009 Sum_probs=58.4
Q ss_pred cCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 015548 22 KGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLP 101 (405)
Q Consensus 22 DgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~~~~L~~ 101 (405)
-.++..++||+.|+++-...++.++++|++-|+.. ...+.|..
T Consensus 33 ~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a-------------------------------------~~~~~lr~ 75 (256)
T PRK03359 33 KISQYDLNAIEAACQLKQQAAEAQVTALSVGGKAL-------------------------------------TNAKGRKD 75 (256)
T ss_pred ccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcch-------------------------------------hhHHHHHH
Confidence 35778899999999865444323588888655421 00123333
Q ss_pred HHHHhhhcCCcEEEEEEecC---CHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHH
Q 015548 102 FRNMCAQRRVEVEVKVIESD---DVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRI 162 (405)
Q Consensus 102 ~~~~~~~~gV~ve~vvle~G---d~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~V 162 (405)
+..+-..++|.+..-...+. ..+..|..++++.++|+|+.|....-+-.. ..|.-+|..+
T Consensus 76 aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~tg-qvg~~lAe~L 138 (256)
T PRK03359 76 VLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQ-QVGLLVGEIL 138 (256)
T ss_pred HHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCCC-cHHHHHHHHh
Confidence 33333233332221111112 257888999999999999999887543222 3343344443
No 33
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=75.29 E-value=1.8 Score=31.06 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHhhhhhccccch
Q 015548 326 DVNFELEKLRIELRHVRGMYAIAQNEANDASRKV 359 (405)
Q Consensus 326 ~~~~E~ekLrlELrh~~~my~~aq~E~~~As~k~ 359 (405)
.++.+||++|.+|-.+-+-|.....|.+..||++
T Consensus 1 ~L~~~Ie~~R~~L~~~~~~~~l~~~~vl~~Sq~L 34 (45)
T PF09388_consen 1 ELLEEIEELRQELNELAEKKGLTDPEVLELSQEL 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3678999999999999999999999999999998
No 34
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=73.62 E-value=22 Score=37.43 Aligned_cols=42 Identities=14% Similarity=0.092 Sum_probs=28.5
Q ss_pred CCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 13 ~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
+..+|+||+.|...|...+...........+-+++++||--.
T Consensus 14 ~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhg 55 (436)
T PRK10660 14 TSRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHG 55 (436)
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCC
Confidence 568999999999999866655544221222224999998643
No 35
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=73.35 E-value=65 Score=28.98 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=27.4
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
+|+|++.|...|-.++.|+.+ .|. +++.+|+-..
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~----~g~-~v~av~~d~g 34 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK----RGI-EVDALHFNSG 34 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH----cCC-eEEEEEEeCC
Confidence 589999999999989888866 244 4899998755
No 36
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=72.78 E-value=52 Score=28.35 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=25.5
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEec
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (405)
+|+|++.|.+.|-.++..+.+... ... .+.++|+-.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~-~~~-~~~~v~~dt 36 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALP-ELK-PVPVIFLDT 36 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcc-ccc-CceEEEeCC
Confidence 589999999999888877766432 212 377888643
No 37
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.64 E-value=32 Score=36.12 Aligned_cols=86 Identities=8% Similarity=0.027 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015548 27 SRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMC 106 (405)
Q Consensus 27 S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~~~~L~~~~~~~ 106 (405)
--.||..|++.+...+.+ ++.|+|.++.... .|. .-.+-+.+-|....+-+
T Consensus 37 DN~aL~~A~~~a~~~~~~-vl~vyi~dp~~~~-----------~~~-----------------~r~~Fl~esL~~L~~~L 87 (454)
T TIGR00591 37 DNWALIAAQTLALKKKLP-LHVCFCLVDFFLA-----------ATR-----------------RHYFFMLGGLDEVANEC 87 (454)
T ss_pred CCHHHHHHHHHHHHcCCC-EEEEEEeCCCccc-----------ccH-----------------HHHHHHHHHHHHHHHHH
Confidence 345676676644333455 9999999775210 010 01123344556666667
Q ss_pred hhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccC
Q 015548 107 AQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQ 144 (405)
Q Consensus 107 ~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~ 144 (405)
++.|+.. ++.. |++.+.|.+++++++|+.|+.-..
T Consensus 88 ~~~g~~L--~v~~-g~~~~~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 88 ERLIIPF--HLLD-GPPKELLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred HHcCCce--EEee-cChHHHHHHHHHHcCCCEEEEecc
Confidence 7778765 3334 999999999999999999998653
No 38
>PLN00200 argininosuccinate synthase; Provisional
Probab=70.50 E-value=60 Score=34.06 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=29.1
Q ss_pred CCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 14 ~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
.++|+||+.|.-.|-.++.|+.+.+ +. +++.+|+-..
T Consensus 5 ~~kVvva~SGGlDSsvla~~L~e~~---G~-eViav~id~G 41 (404)
T PLN00200 5 LNKVVLAYSGGLDTSVILKWLRENY---GC-EVVCFTADVG 41 (404)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHHhh---CC-eEEEEEEECC
Confidence 4699999999999999999987632 33 4888887643
No 39
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=69.75 E-value=59 Score=28.93 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=25.3
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEec
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (405)
+|+|++.|...|-.++.++.+ .+.. ++.+|+..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~----~~~~-v~~~~~~~ 33 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKK----EGYE-VHALSFDY 33 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHH----cCCc-EEEEEEEC
Confidence 589999999999988877754 2333 88888854
No 40
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=69.47 E-value=64 Score=28.10 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=24.9
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEe
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (405)
.++|++.|...|-.++.++.+... . .+..+|+-
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~---~-~v~~v~~~ 35 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYG---L-NPLAVTVD 35 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhC---C-ceEEEEeC
Confidence 689999999999999988866431 1 27777764
No 41
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=67.97 E-value=71 Score=32.07 Aligned_cols=40 Identities=23% Similarity=0.162 Sum_probs=28.7
Q ss_pred CCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 14 ~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
+.++++++.|.+.|--+|..|.+.+... ...+.+|||-..
T Consensus 19 f~~~vv~~SGGKDS~VlLhLa~kaf~~~-~~p~~vl~IDTG 58 (294)
T TIGR02039 19 FERPVMLYSIGKDSSVLLHLARKAFYPG-PLPFPLLHVDTG 58 (294)
T ss_pred cCCcEEEEecChHHHHHHHHHHHHhccc-CCCeEEEEEecC
Confidence 3456889999999998887776654332 334899998654
No 42
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=67.54 E-value=26 Score=34.57 Aligned_cols=88 Identities=23% Similarity=0.131 Sum_probs=52.9
Q ss_pred EeecCCHHHHHHHHHHHHHhc-cCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 015548 19 VAVKGNRKSRYAVLWALEKFI-PEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDR 97 (405)
Q Consensus 19 VAVDgS~~S~~AL~wAl~~a~-~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~~~ 97 (405)
++..-++..++|++.|+++-. ..+. +++.|++-|+. +++
T Consensus 31 v~~~in~~D~~AvEeAlrLke~~~~~-eV~vlt~Gp~~---------------------------------------a~~ 70 (260)
T COG2086 31 VPLSINPFDLNAVEEALRLKEKGYGG-EVTVLTMGPPQ---------------------------------------AEE 70 (260)
T ss_pred CCcccChhhHHHHHHHHHhhccCCCc-eEEEEEecchh---------------------------------------hHH
Confidence 344456788999999999665 2444 59999855442 111
Q ss_pred HHHHHHHHhhhcCCcEEEEEEec---CCHHHHHHHHHHhCCCCEEEEccCCC
Q 015548 98 LLLPFRNMCAQRRVEVEVKVIES---DDVAKAIADEVASCNINKLVIGAQSQ 146 (405)
Q Consensus 98 ~L~~~~~~~~~~gV~ve~vvle~---Gd~aeaIvd~A~e~~aDlIVmGs~g~ 146 (405)
.|..+..+-.++++.++....++ -..+.+|.+++++.+.|+|++|...-
T Consensus 71 ~lr~aLAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~ 122 (260)
T COG2086 71 ALREALAMGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAI 122 (260)
T ss_pred HHHHHHhcCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 22222222222222222111112 23688899999999999999998875
No 43
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=66.72 E-value=27 Score=31.10 Aligned_cols=79 Identities=6% Similarity=0.052 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEE
Q 015548 95 TDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYG 174 (405)
Q Consensus 95 ~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlV 174 (405)
..+-|...++-+.+.|+.. +++. |++.+.|.+++++++|+.|+.-.. .+...+...- .+...+-+ . .|.+..
T Consensus 51 l~~sL~~L~~~L~~~g~~L--~v~~-g~~~~~l~~l~~~~~~~~V~~~~~-~~~~~~~rd~-~v~~~l~~-~--~i~~~~ 122 (165)
T PF00875_consen 51 LLESLADLQESLRKLGIPL--LVLR-GDPEEVLPELAKEYGATAVYFNEE-YTPYERRRDE-RVRKALKK-H--GIKVHT 122 (165)
T ss_dssp HHHHHHHHHHHHHHTTS-E--EEEE-SSHHHHHHHHHHHHTESEEEEE----SHHHHHHHH-HHHHHHHH-T--TSEEEE
T ss_pred HHHHHHHHHHHHHhcCcce--EEEe-cchHHHHHHHHHhcCcCeeEeccc-cCHHHHHHHH-HHHHHHHh-c--ceEEEE
Confidence 3455666666677778764 4445 899999999999999999998644 3333332222 24444332 2 277777
Q ss_pred EeCCccc
Q 015548 175 VEKGKLS 181 (405)
Q Consensus 175 V~kgk~~ 181 (405)
+...-+.
T Consensus 123 ~~~~~L~ 129 (165)
T PF00875_consen 123 FDDHTLV 129 (165)
T ss_dssp E--SSSS
T ss_pred ECCcEEE
Confidence 7665444
No 44
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=65.24 E-value=48 Score=27.07 Aligned_cols=33 Identities=21% Similarity=0.085 Sum_probs=25.4
Q ss_pred EEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 17 VAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 17 ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
|+|++.|...|-..+.++.+. . . ++..+|+-..
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~-~---~-~~~~~~~~~~ 33 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL-G---Y-QVIAVTVDHG 33 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh-C---C-CEEEEEEcCC
Confidence 689999999998888777653 2 2 3889998655
No 45
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=64.67 E-value=64 Score=33.72 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=27.2
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
+|+||+.|.-.|-.++.|+.+. +. +++.+|+-..
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~-~V~av~id~G 34 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GY-EVIAYTADVG 34 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CC-EEEEEEEecC
Confidence 5899999999999999998663 44 4999998533
No 46
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=63.73 E-value=13 Score=31.49 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEeCCccc
Q 015548 122 DVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLS 181 (405)
Q Consensus 122 d~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kgk~~ 181 (405)
.++.+.++.|++.++..||+=+.+ |. ++..+.+.-| .|||+++...+..
T Consensus 3 aia~aa~~~A~~~~ak~Ivv~T~s---------G~-ta~~isk~RP-~~pIiavt~~~~~ 51 (117)
T PF02887_consen 3 AIARAAVELAEDLNAKAIVVFTES---------GR-TARLISKYRP-KVPIIAVTPNESV 51 (117)
T ss_dssp HHHHHHHHHHHHHTESEEEEE-SS---------SH-HHHHHHHT-T-SSEEEEEESSHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCC---------ch-HHHHHHhhCC-CCeEEEEcCcHHH
Confidence 367788999999999999986665 53 7888888887 5999999887554
No 47
>PRK00509 argininosuccinate synthase; Provisional
Probab=62.52 E-value=1.1e+02 Score=31.98 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=29.2
Q ss_pred CCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 14 ~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
..+|+||+.|.-.|--++.|+.+.+ +. +++.+|+.-.
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~l---G~-eViavt~d~G 38 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKETY---GC-EVIAFTADVG 38 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHhh---CC-eEEEEEEecC
Confidence 3689999999999999999987743 34 3888887644
No 48
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=62.01 E-value=1.1e+02 Score=31.48 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=27.4
Q ss_pred CCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEec
Q 015548 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (405)
Q Consensus 12 ~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (405)
.+..+|+||+.|...|--++.++.+ .+. +++.+|+.-
T Consensus 3 ~~~~kVlValSGGVDSsvaa~LL~~----~G~-~V~~v~~~~ 39 (360)
T PRK14665 3 EKNKRVLLGMSGGTDSSVAAMLLLE----AGY-EVTGVTFRF 39 (360)
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHH----cCC-eEEEEEEec
Confidence 3557999999999988887776654 233 388888763
No 49
>PF12107 VEK-30: Plasminogen (Pg) ligand in fibrinolytic pathway; InterPro: IPR021965 Pg is an important mediator of angiostatin production in the fibrinolytic pathway. Pg is made up of five subunit kringle molecules (Pg-K1 to Pg-K5), of which the first three make the protein angiostatin. VEK-30 is a domain of the group A streptococcal protein PAM. It binds to Pg-K2 of angiostatin and activates the molecule to mediate its anti-angiogenic effects. VEK-30 binds to angiostatin via a C-terminal lysine with argininyl and glutamyl side chain residues known as a 'through space isostere' [].; PDB: 2KJ4_B 2DOI_B 2DOH_C 1I5K_D.
Probab=60.00 E-value=7.6 Score=22.37 Aligned_cols=10 Identities=50% Similarity=0.667 Sum_probs=8.7
Q ss_pred HHHHHHHHHH
Q 015548 328 NFELEKLRIE 337 (405)
Q Consensus 328 ~~E~ekLrlE 337 (405)
++||+|||.|
T Consensus 2 ~aeLerLkne 11 (17)
T PF12107_consen 2 EAELERLKNE 11 (17)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHh
Confidence 5799999987
No 50
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=57.61 E-value=1.5e+02 Score=28.46 Aligned_cols=93 Identities=18% Similarity=0.142 Sum_probs=57.0
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHH
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~ 95 (405)
+++|...|.+.|-.|+-+|++. ... ..|+++.+...... +... .+.
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~----~~V-~~L~~~~~~~~~s~----------~~h~-----~~~-------------- 47 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE----HEV-ISLVGVFSENEESY----------MFHS-----PNL-------------- 47 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc----Cee-EEEEEEcCCCCCcc----------cccc-----CCH--------------
Confidence 6889999999999999999873 244 77777776532100 1000 011
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEec--CCHHHHHHHHHHhCCCCEEEEccCCC
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIES--DDVAKAIADEVASCNINKLVIGAQSQ 146 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle~--Gd~aeaIvd~A~e~~aDlIVmGs~g~ 146 (405)
+++ +..|+.-|++.......+ .+-.+.+.+..++.+++.||-|.=-.
T Consensus 48 -~~~---~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~s 96 (222)
T TIGR00289 48 -HLT---DLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIES 96 (222)
T ss_pred -HHH---HHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECcccc
Confidence 111 123445577765444332 44666677777888899999988764
No 51
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=56.69 E-value=92 Score=33.07 Aligned_cols=46 Identities=9% Similarity=0.074 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccC
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQ 144 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~ 144 (405)
.+-|....+-+.+.|+.. ++.. |++.+.|.+++++++|+.|+.-..
T Consensus 54 ~esL~~L~~~L~~~G~~L--~v~~-G~p~~vl~~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 54 IGCLQELQQRYQQAGSQL--LILQ-GDPVQLIPQLAQQLGAKAVYWNLD 99 (471)
T ss_pred HHHHHHHHHHHHHCCCCe--EEEE-CCHHHHHHHHHHHcCCCEEEEecc
Confidence 444555556666778765 3344 999999999999999999987444
No 52
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=56.57 E-value=92 Score=29.05 Aligned_cols=34 Identities=32% Similarity=0.350 Sum_probs=25.4
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
+++|++.|.+.|-.|+.+|.+ .|. ++..|++..+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~----~G~-~v~~l~~~~~ 34 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE----EGH-EVVALLNLTP 34 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCC-EEEEEEEEec
Confidence 578999999999999999977 233 3666665544
No 53
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=55.30 E-value=1.2e+02 Score=29.26 Aligned_cols=41 Identities=5% Similarity=0.306 Sum_probs=27.5
Q ss_pred HHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccC
Q 015548 102 FRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQ 144 (405)
Q Consensus 102 ~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~ 144 (405)
.+++..+++..+... +. |-+-..-+..+.+.++|.+|+|+.
T Consensus 159 lr~~~~~~~~~~~Ie-VD-GGI~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 159 LKALRERNGLEYLIE-VD-GSCNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred HHHHHHhcCCCeEEE-EE-CCCCHHHHHHHHHcCCCEEEEChH
Confidence 334444556554333 34 667776777777889999999976
No 54
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=54.49 E-value=1.3e+02 Score=27.10 Aligned_cols=58 Identities=26% Similarity=0.400 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEE--EeCCccccccCC
Q 015548 123 VAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYG--VEKGKLSSVRPS 186 (405)
Q Consensus 123 ~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlV--V~kgk~~~~r~~ 186 (405)
.+++|.+++++.++++|++|....+ +-+.+ .++.++ .++-.+.|.- +..|++...|+.
T Consensus 79 ~a~~l~~~i~~~~p~~Vl~g~t~~g---~~la~-rlA~~L--~~~~vsdv~~l~~~~~~~~~~r~~ 138 (181)
T cd01985 79 TAKALAALIKKEKPDLILAGATSIG---KQLAP-RVAALL--GVPQISDVTKLEIDGGDLTVTRPI 138 (181)
T ss_pred HHHHHHHHHHHhCCCEEEECCcccc---cCHHH-HHHHHh--CCCcceeEEEEEEeCCEEEEEEEc
Confidence 3688999999999999999999874 23333 355554 3332233333 334556666654
No 55
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=54.43 E-value=65 Score=26.96 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=31.6
Q ss_pred HhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCC
Q 015548 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQG 147 (405)
Q Consensus 105 ~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s 147 (405)
+++..|.++.. +...-+.+.+++.+.+.++|+|++......
T Consensus 22 ~l~~~G~~V~~--lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~ 62 (119)
T cd02067 22 ALRDAGFEVID--LGVDVPPEEIVEAAKEEDADAIGLSGLLTT 62 (119)
T ss_pred HHHHCCCEEEE--CCCCCCHHHHHHHHHHcCCCEEEEeccccc
Confidence 56678987733 344678889999999999999999877433
No 56
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=53.70 E-value=2.3e+02 Score=28.59 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=27.9
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
.+|+||+.|...|--++.++.+.+ |. +++.|||-..
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~~---G~-~v~av~vd~G 52 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRAI---GD-RLTCVFVDHG 52 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHHh---CC-CEEEEEEeCC
Confidence 789999999998888887775532 34 3999998754
No 57
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=52.58 E-value=2e+02 Score=29.77 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=24.9
Q ss_pred CCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEe
Q 015548 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (405)
Q Consensus 13 ~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (405)
+.++|+||+.|.-.|--++.+..+ .+. +++.||+.
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~~----~G~-eV~av~~~ 38 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQE----QGY-EIVGVTMR 38 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHH----cCC-cEEEEEec
Confidence 447999999999888776655432 344 38888874
No 58
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=52.19 E-value=13 Score=31.38 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHhCCCCEEEEccCC
Q 015548 121 DDVAKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 121 Gd~aeaIvd~A~e~~aDlIVmGs~g 145 (405)
-.-.+.|+++|+++++|++|+|.-.
T Consensus 48 ~~d~~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 48 ITDPEELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp TT-HHHHHHHHHHTTESEEEESSHH
T ss_pred CCCHHHHHHHHHHcCCCEEEECChH
Confidence 4557889999999999999999765
No 59
>PRK04527 argininosuccinate synthase; Provisional
Probab=51.93 E-value=1.3e+02 Score=31.59 Aligned_cols=35 Identities=11% Similarity=0.278 Sum_probs=27.4
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
++|+||..|.-.|--++.|+.+ .|. +++.|++.-.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e----~G~-~Viavt~d~g 37 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQE----RGY-AVHTVFADTG 37 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHH----cCC-cEEEEEEEeC
Confidence 6899999999988999999766 244 3888887544
No 60
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=51.93 E-value=42 Score=35.45 Aligned_cols=60 Identities=18% Similarity=0.110 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEec-CCHHHHHHHHHHhCCCCEEEEccC
Q 015548 83 VAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIES-DDVAKAIADEVASCNINKLVIGAQ 144 (405)
Q Consensus 83 ~~~~~~~e~~~~~~~~L~~~~~~~~~~gV~ve~vvle~-Gd~aeaIvd~A~e~~aDlIVmGs~ 144 (405)
...+++++.-+...++++.+.+.+++.|.+|.. .+. .+..+.|.++++++++..||.|.+
T Consensus 37 ~~~~ik~~~~~~ld~~l~~~~~~~~~~g~~v~~--a~t~~eA~~~v~~i~~~~~~~~vv~~kS 97 (432)
T TIGR00273 37 LVKEIKLKVLENLDFYLDQLKENVTQRGGHVYY--AKTAEEARKIIGKVAQEKNGKKVVKSKS 97 (432)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 344566666667788899998888888876644 333 567777889999999999999844
No 61
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=51.09 E-value=1.3e+02 Score=28.87 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=25.8
Q ss_pred HHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccC
Q 015548 104 NMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQ 144 (405)
Q Consensus 104 ~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~ 144 (405)
++..+++..+... +. |-+...-+..+.+.++|.+|+|+.
T Consensus 163 ~~~~~~~~~~~Ie-VD-GGI~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 163 KKIDALGKPIRLE-ID-GGVKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred HHHHhcCCCeeEE-EE-CCCCHHHHHHHHHcCCCEEEEChh
Confidence 3333445443332 34 667777777788899999999965
No 62
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=51.05 E-value=1e+02 Score=32.03 Aligned_cols=47 Identities=6% Similarity=0.082 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccC
Q 015548 95 TDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQ 144 (405)
Q Consensus 95 ~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~ 144 (405)
+.+-|...++-+++.|+.. ++.. |++.+.|.+++++++|+.|+.-..
T Consensus 59 l~esL~~L~~~L~~~g~~L--~v~~-G~~~~vl~~L~~~~~~~~V~~~~~ 105 (429)
T TIGR02765 59 LLESLKDLRTSLRKLGSDL--LVRS-GKPEDVLPELIKELGVRTVFLHQE 105 (429)
T ss_pred HHHHHHHHHHHHHHcCCCe--EEEe-CCHHHHHHHHHHHhCCCEEEEecc
Confidence 3455666666677778775 3334 899999999999999999988544
No 63
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=50.86 E-value=70 Score=29.28 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=42.9
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHH---HhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEE
Q 015548 99 LLPFRNMCAQRRVEVEVKVIESDDVAKAIADEV---ASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (405)
Q Consensus 99 L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A---~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV 175 (405)
+++....++..||+++..+..-..-.+.+.+++ ++.+++.||.++-+-.++...+-| ..+ .||+-|
T Consensus 14 ~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~---------~t~--~PVIgv 82 (156)
T TIGR01162 14 MKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAA---------LTP--LPVIGV 82 (156)
T ss_pred HHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHh---------ccC--CCEEEe
Confidence 344444556679999888875555555565555 556788888887775544433322 333 788888
Q ss_pred eC
Q 015548 176 EK 177 (405)
Q Consensus 176 ~k 177 (405)
+-
T Consensus 83 P~ 84 (156)
T TIGR01162 83 PV 84 (156)
T ss_pred cC
Confidence 65
No 64
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=50.47 E-value=20 Score=29.42 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=17.4
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHh
Q 015548 319 SSSESQVDVNFELEKLRIELRHVR 342 (405)
Q Consensus 319 ~~s~~q~~~~~E~ekLrlELrh~~ 342 (405)
.++..+...+ |+|+|+.||++++
T Consensus 10 ~ls~~e~~~k-~lE~L~~eL~~it 32 (84)
T PF04822_consen 10 NLSKKEKKMK-ELERLKFELQKIT 32 (84)
T ss_pred CccHHHHHHH-HHHHHHHHHHHHH
Confidence 3556666656 8999999999865
No 65
>PRK14057 epimerase; Provisional
Probab=50.34 E-value=1.5e+02 Score=29.25 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=26.8
Q ss_pred HHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCC
Q 015548 104 NMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 104 ~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g 145 (405)
++..+++..+... +. |.+...-+..+.+.++|.+|+|+.-
T Consensus 185 ~~~~~~~~~~~Ie-VD-GGI~~~ti~~l~~aGad~~V~GSal 224 (254)
T PRK14057 185 CLLGDKREGKIIV-ID-GSLTQDQLPSLIAQGIDRVVSGSAL 224 (254)
T ss_pred HHHHhcCCCceEE-EE-CCCCHHHHHHHHHCCCCEEEEChHh
Confidence 3344456544333 34 7777777777888999999999653
No 66
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=49.57 E-value=2.2e+02 Score=28.38 Aligned_cols=36 Identities=25% Similarity=0.166 Sum_probs=26.4
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
.+|+||..|...|-..+..|.+.+ |. .+..+.|..|
T Consensus 18 ~kv~vAfSGGvDSslLa~la~~~l---G~-~v~AvTv~sP 53 (269)
T COG1606 18 KKVVVAFSGGVDSSLLAKLAKEAL---GD-NVVAVTVDSP 53 (269)
T ss_pred CeEEEEecCCccHHHHHHHHHHHh---cc-ceEEEEEecC
Confidence 499999999988877776666644 23 3777777765
No 67
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=47.79 E-value=2.2e+02 Score=27.57 Aligned_cols=93 Identities=19% Similarity=0.255 Sum_probs=55.5
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHH
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~ 95 (405)
++++=+.|.+.|-+|+-||++. |..-..|+++.|...... |... | +-+
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~----G~eV~~Ll~~~p~~~dS~----------m~H~-~----n~~------------- 49 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEE----GHEVVYLLTVKPENGDSY----------MFHT-P----NLE------------- 49 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHc----CCeeEEEEEEecCCCCee----------eeec-c----chH-------------
Confidence 4567788999999999999763 222388888888753100 1111 1 000
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEe--cCCHHHHHHHHHHhCCCCEEEEccCC
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIE--SDDVAKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle--~Gd~aeaIvd~A~e~~aDlIVmGs~g 145 (405)
+.. -.++.-|++....... .++-.+.+.+..++.++|-||.|+=-
T Consensus 50 ---~~~--~~Ae~~gi~l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~GaI~ 96 (223)
T COG2102 50 ---LAE--LQAEAMGIPLVTFDTSGEEEREVEELKEALRRLKVDGIVAGAIA 96 (223)
T ss_pred ---HHH--HHHHhcCCceEEEecCccchhhHHHHHHHHHhCcccEEEEchhh
Confidence 001 1122346665444332 12466777788888889999998764
No 68
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=47.74 E-value=2.4e+02 Score=30.07 Aligned_cols=44 Identities=14% Similarity=0.097 Sum_probs=33.8
Q ss_pred ccCCCCCCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 6 IVELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 6 ~~~~~~~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
.|++|.....+++|.+.|...|--|+.|+.+ +|. +++.||+...
T Consensus 169 ~gGlP~g~~gk~lvllSGGiDS~va~~~~~k----rG~-~v~~l~f~~g 212 (482)
T PRK01269 169 LGGFPLGTQEDVLSLISGGFDSGVASYMLMR----RGS-RVHYCFFNLG 212 (482)
T ss_pred CCCCCccccCeEEEEEcCCchHHHHHHHHHH----cCC-EEEEEEEecC
Confidence 3456777788999999999999988877655 344 4999998643
No 69
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=47.01 E-value=2.7e+02 Score=27.85 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=26.2
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
+|+||+.|...|--++.++.+.+ |. +++.+||-..
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~l---G~-~v~aV~vd~g 35 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAI---GD-RLTCVFVDNG 35 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHh---CC-cEEEEEecCC
Confidence 58999999999988877775522 34 3899998544
No 70
>PRK05370 argininosuccinate synthase; Validated
Probab=47.00 E-value=2.9e+02 Score=29.49 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCCCcccccc
Q 015548 123 VAKAIADEVASCNINKLVIGAQSQGIFTWKFK 154 (405)
Q Consensus 123 ~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~l 154 (405)
+++.|+++|++.+++.|.=|+.|+|.-.-.|-
T Consensus 110 ia~~lv~~A~~~ga~aIAHG~TGKGNDQvRFE 141 (447)
T PRK05370 110 TGTMLVAAMKEDGVNIWGDGSTYKGNDIERFY 141 (447)
T ss_pred HHHHHHHHHHHhCCcEEEEcCCCCCCchHHHH
Confidence 78999999999999999999999887555554
No 71
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=46.78 E-value=19 Score=34.52 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHhhhhhccccch
Q 015548 325 VDVNFELEKLRIELRHVRGMYAIAQNEANDASRKV 359 (405)
Q Consensus 325 ~~~~~E~ekLrlELrh~~~my~~aq~E~~~As~k~ 359 (405)
...+.||||-+-+++|+.+|.+.|++|--+|..|+
T Consensus 22 ~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~ql 56 (214)
T PF07795_consen 22 MEANEELRKREEQIAHLKDLLKKAYQERDEAREQL 56 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888889999999999999999999999998
No 72
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=45.96 E-value=74 Score=28.87 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=38.7
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhC---CCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEE
Q 015548 99 LLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASC---NINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (405)
Q Consensus 99 L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~---~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV 175 (405)
.++.+..+++.|+.++..+..-..-.+.+.+++++. +++.+|.++-.-.++... |.-.++ +||+-|
T Consensus 16 ~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgv---------va~~t~--~PVIgv 84 (150)
T PF00731_consen 16 AEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGV---------VASLTT--LPVIGV 84 (150)
T ss_dssp HHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHH---------HHHHSS--S-EEEE
T ss_pred HHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhh---------heeccC--CCEEEe
Confidence 344445566678999888776566677777777664 578777766554443322 222333 788888
Q ss_pred eC
Q 015548 176 EK 177 (405)
Q Consensus 176 ~k 177 (405)
+.
T Consensus 85 P~ 86 (150)
T PF00731_consen 85 PV 86 (150)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 73
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=43.87 E-value=2.3e+02 Score=25.02 Aligned_cols=112 Identities=21% Similarity=0.157 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 015548 25 RKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRN 104 (405)
Q Consensus 25 ~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~~~~L~~~~~ 104 (405)
+.+..+|..|.+++...+. ++++|.+-+.. + . .+.+++
T Consensus 15 ~~~~e~l~~A~~La~~~g~-~v~av~~G~~~---------------~-------~------------~~~l~~------- 52 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGG-EVTAVVLGPAE---------------E-------A------------AEALRK------- 52 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTS-EEEEEEEETCC---------------C-------H------------HHHHHH-------
T ss_pred HHHHHHHHHHHHHHhhcCC-eEEEEEEecch---------------h-------h------------HHHHhh-------
Confidence 7899999999998866655 48888755211 0 0 011112
Q ss_pred HhhhcCCcEEEEEEecC--------CHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCC--CceEEE
Q 015548 105 MCAQRRVEVEVKVIESD--------DVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPS--FCTVYG 174 (405)
Q Consensus 105 ~~~~~gV~ve~vvle~G--------d~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~--~C~VlV 174 (405)
.+...|+.-... +.+. ..+++|.+++++.++|+|++|....+. -+.+ .++.++= +|. .|.=+-
T Consensus 53 ~l~~~G~d~v~~-~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~g~---~la~-~lA~~L~--~~~v~~v~~l~ 125 (164)
T PF01012_consen 53 ALAKYGADKVYH-IDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSFGR---DLAP-RLAARLG--APLVTDVTDLE 125 (164)
T ss_dssp HHHSTTESEEEE-EE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHHHH---HHHH-HHHHHHT---EEEEEEEEEE
T ss_pred hhhhcCCcEEEE-ecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCCCC---cHHH-HHHHHhC--CCccceEEEEE
Confidence 233356542222 2211 267789999999999999999876542 2333 3555552 221 122233
Q ss_pred EeCCccccccC
Q 015548 175 VEKGKLSSVRP 185 (405)
Q Consensus 175 V~kgk~~~~r~ 185 (405)
...|++...|+
T Consensus 126 ~~~~~~~~~r~ 136 (164)
T PF01012_consen 126 VEDGGLVVTRP 136 (164)
T ss_dssp EETTEEEEEEE
T ss_pred ECCCeEEEEEE
Confidence 44455555553
No 74
>PRK00919 GMP synthase subunit B; Validated
Probab=42.72 E-value=3.2e+02 Score=27.54 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=28.7
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
.+|+||+.|.-.|--++.++.+.. |. +++.||+-..
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~l---G~-~v~aV~vD~G 57 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRAI---GD-RLTPVFVDTG 57 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHHh---CC-eEEEEEEECC
Confidence 799999999999998888886632 34 4999998755
No 75
>PRK14561 hypothetical protein; Provisional
Probab=42.50 E-value=2.7e+02 Score=25.79 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=22.4
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEe
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (405)
.+|+|++.|...|-.++.++.+ + . ++.++|+.
T Consensus 1 mkV~ValSGG~DSslll~~l~~-~----~-~v~a~t~~ 32 (194)
T PRK14561 1 MKAGVLFSGGKDSSLAAILLER-F----Y-DVELVTVN 32 (194)
T ss_pred CEEEEEEechHHHHHHHHHHHh-c----C-CeEEEEEe
Confidence 3799999999988887776633 2 2 25666653
No 76
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=41.66 E-value=2.4e+02 Score=28.64 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHhCCCCEEEEccCCC
Q 015548 122 DVAKAIADEVASCNINKLVIGAQSQ 146 (405)
Q Consensus 122 d~aeaIvd~A~e~~aDlIVmGs~g~ 146 (405)
-....+.++|.++++.+|+-|.+..
T Consensus 147 ~~~~~l~~~A~~~gi~~Il~G~~~d 171 (343)
T TIGR03573 147 AIFASVYQVALKFNIPLIIWGENIA 171 (343)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCCHH
Confidence 3556778899999999999998874
No 77
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=41.52 E-value=4e+02 Score=27.62 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=33.2
Q ss_pred ccCCCCCCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEec
Q 015548 6 IVELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (405)
Q Consensus 6 ~~~~~~~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (405)
.+++|-....+++|++.|.-.|--|+.++.+ .|. .++.||...
T Consensus 168 ~GGlP~g~~gkvvvllSGGiDS~vaa~l~~k----~G~-~v~av~~~~ 210 (394)
T PRK01565 168 AGGLPVGTSGKALLLLSGGIDSPVAGYLAMK----RGV-EIEAVHFHS 210 (394)
T ss_pred CCCCccCCCCCEEEEECCChhHHHHHHHHHH----CCC-EEEEEEEeC
Confidence 3456777789999999999999988877654 344 489999854
No 78
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=41.23 E-value=67 Score=32.18 Aligned_cols=49 Identities=12% Similarity=0.059 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCC
Q 015548 97 RLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 97 ~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g 145 (405)
+.|+.+.+..++-||++.-..+....-.+.|.++.+++..|.||+-.|.
T Consensus 116 ~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 116 EYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred HHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCch
Confidence 3455555566677999998888778899999999999999999996664
No 79
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=40.88 E-value=74 Score=31.79 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCC
Q 015548 98 LLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 98 ~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g 145 (405)
.|+.+.+..++-||++.-..+....-.+.|.++.+++..|.||+-.|.
T Consensus 116 YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 116 YLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred HHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 455555556667899988888778899999999999999999996664
No 80
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=40.81 E-value=1e+02 Score=28.33 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=35.2
Q ss_pred HHHHhhhcCCcEEEEEEecCCHHHHHHHHH---HhCCCCEEEEccCCCCCc
Q 015548 102 FRNMCAQRRVEVEVKVIESDDVAKAIADEV---ASCNINKLVIGAQSQGIF 149 (405)
Q Consensus 102 ~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A---~e~~aDlIVmGs~g~s~l 149 (405)
..+.+++.||+.+..++.-+...+.+.+|| ++.++..||-|+-|--.+
T Consensus 21 Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHL 71 (162)
T COG0041 21 AAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHL 71 (162)
T ss_pred HHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhc
Confidence 334455669999999887667777666655 778899999999885443
No 81
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=40.25 E-value=3e+02 Score=25.28 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=22.6
Q ss_pred EEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEe
Q 015548 17 VAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (405)
Q Consensus 17 ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (405)
++|++.|...|-.++.++.+ .+. ++..+|+.
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~----~g~-~v~~~~~~ 31 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKD----EGY-EVHAITFD 31 (201)
T ss_pred CEEEeccHHHHHHHHHHHHH----cCC-cEEEEEEE
Confidence 47899999888888766644 234 38888875
No 82
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=40.06 E-value=50 Score=33.67 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccc-hhhHHHhhhCCCCceEEEEe
Q 015548 98 LLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKN-NLSSRISICVPSFCTVYGVE 176 (405)
Q Consensus 98 ~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGS-sVs~~Vvk~ap~~C~VlVV~ 176 (405)
++......++++|.++.....+. +.+.++.+.++++.+++|.+|.+ +..+++++ .=..++.+.+..+-|=++|+
T Consensus 15 fFk~~I~eL~~~GheV~it~R~~----~~~~~LL~~yg~~y~~iG~~g~~-~~~Kl~~~~~R~~~l~~~~~~~~pDv~is 89 (335)
T PF04007_consen 15 FFKNIIRELEKRGHEVLITARDK----DETEELLDLYGIDYIVIGKHGDS-LYGKLLESIERQYKLLKLIKKFKPDVAIS 89 (335)
T ss_pred HHHHHHHHHHhCCCEEEEEEecc----chHHHHHHHcCCCeEEEcCCCCC-HHHHHHHHHHHHHHHHHHHHhhCCCEEEe
Confidence 45555566777888876665542 45566777899999999999944 44444442 11122333333333445556
Q ss_pred CCcccccc
Q 015548 177 KGKLSSVR 184 (405)
Q Consensus 177 kgk~~~~r 184 (405)
.|.....|
T Consensus 90 ~~s~~a~~ 97 (335)
T PF04007_consen 90 FGSPEAAR 97 (335)
T ss_pred cCcHHHHH
Confidence 76655555
No 83
>PRK00074 guaA GMP synthase; Reviewed
Probab=39.63 E-value=2.3e+02 Score=30.58 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=27.3
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
++|+||+.|...|--++..+.+.+ +. +++.+|+-..
T Consensus 216 ~~vlva~SGGvDS~vll~ll~~~l---g~-~v~av~vd~g 251 (511)
T PRK00074 216 KKVILGLSGGVDSSVAAVLLHKAI---GD-QLTCVFVDHG 251 (511)
T ss_pred CcEEEEeCCCccHHHHHHHHHHHh---CC-ceEEEEEeCC
Confidence 799999999999887777765533 34 3899998543
No 84
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=39.49 E-value=2.6e+02 Score=26.04 Aligned_cols=114 Identities=15% Similarity=0.069 Sum_probs=62.1
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHH
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~ 95 (405)
-++|+--|.=+.--+.+.|...... +. ++.|+.. +... .| +
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-~~-~v~lis~-D~~R-------------~g-----------------------a 44 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-GK-KVALISA-DTYR-------------IG-----------------------A 44 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEEE-STSS-------------TH-----------------------H
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-cc-cceeecC-CCCC-------------cc-----------------------H
Confidence 4678888887777888888765543 44 3666653 1110 11 1
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecCCHHHHH---HHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceE
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAI---ADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTV 172 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaI---vd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~V 172 (405)
.+-|. .+++.-||++.....+ .++++.+ ++..++.++|+|++=+.|++......+.. +. .+.+... .+.+
T Consensus 45 ~eQL~---~~a~~l~vp~~~~~~~-~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~e-l~-~~~~~~~-~~~~ 117 (196)
T PF00448_consen 45 VEQLK---TYAEILGVPFYVARTE-SDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEE-LK-KLLEALN-PDEV 117 (196)
T ss_dssp HHHHH---HHHHHHTEEEEESSTT-SCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHH-HH-HHHHHHS-SSEE
T ss_pred HHHHH---HHHHHhccccchhhcc-hhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHH-HH-HHhhhcC-Cccc
Confidence 11222 2344446665443222 3566544 45556778999999999998765544432 32 2333332 2555
Q ss_pred EEE
Q 015548 173 YGV 175 (405)
Q Consensus 173 lVV 175 (405)
++|
T Consensus 118 ~LV 120 (196)
T PF00448_consen 118 HLV 120 (196)
T ss_dssp EEE
T ss_pred eEE
Confidence 555
No 85
>PRK11914 diacylglycerol kinase; Reviewed
Probab=39.32 E-value=1.5e+02 Score=29.08 Aligned_cols=65 Identities=14% Similarity=0.121 Sum_probs=37.4
Q ss_pred HHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEeCC
Q 015548 104 NMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (405)
Q Consensus 104 ~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kg 178 (405)
+.+++.|+++..+..+...-+..+++.+.+.++|.||+ .-|-|-+...+ ..+.. ...++-|++-|
T Consensus 33 ~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv-~GGDGTi~evv------~~l~~---~~~~lgiiP~G 97 (306)
T PRK11914 33 ARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVV-VGGDGVISNAL------QVLAG---TDIPLGIIPAG 97 (306)
T ss_pred HHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEE-ECCchHHHHHh------HHhcc---CCCcEEEEeCC
Confidence 34456677776665544344666776666778887765 33444444322 22322 23678888866
No 86
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=38.98 E-value=28 Score=21.39 Aligned_cols=20 Identities=45% Similarity=0.710 Sum_probs=14.2
Q ss_pred eeEEEEe--eeEEEEeCCceee
Q 015548 382 MLIVHFS--LSWIVIDNNKVDL 401 (405)
Q Consensus 382 ~~~~~~~--~~~~~~~~~~~~~ 401 (405)
|-|.|.. --|.-|||.-||-
T Consensus 1 mnilhicvtskwfnidnkivdh 22 (24)
T PF08053_consen 1 MNILHICVTSKWFNIDNKIVDH 22 (24)
T ss_pred CceEEEEEeeeeEeccCeeccc
Confidence 3456654 4699999988873
No 87
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=38.67 E-value=2.4e+02 Score=28.76 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=25.3
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
++|+||+.|...|--++..+.+ .+- +++.+|+...
T Consensus 1 ~kVlValSGGvDSsvla~lL~~----~G~-~V~~v~~~~~ 35 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE----QGY-EVIGVFMKLW 35 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH----cCC-cEEEEEEeCC
Confidence 4899999999988877655543 233 3888888743
No 88
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=37.20 E-value=70 Score=30.97 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=26.5
Q ss_pred HHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccC
Q 015548 104 NMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQ 144 (405)
Q Consensus 104 ~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~ 144 (405)
++.++++..+... +. |.+-..-+..+.+.++|.+|+|+.
T Consensus 171 ~~~~~~~~~~~Ie-VD-GGI~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 171 NRLGNRRVEKLIS-ID-GSMTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHhcCCCceEE-EE-CCCCHHHHHHHHHCCCCEEEEChh
Confidence 3344456554332 34 667777777788899999999965
No 89
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=36.83 E-value=2e+02 Score=23.58 Aligned_cols=39 Identities=8% Similarity=0.164 Sum_probs=27.9
Q ss_pred HhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCC
Q 015548 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 105 ~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g 145 (405)
+++++|.++.. +......+.+.+.+.+.++|+|.+...-
T Consensus 23 ~l~~~G~~v~~--~d~~~~~~~l~~~~~~~~pd~V~iS~~~ 61 (121)
T PF02310_consen 23 YLRKAGHEVDI--LDANVPPEELVEALRAERPDVVGISVSM 61 (121)
T ss_dssp HHHHTTBEEEE--EESSB-HHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHCCCeEEE--ECCCCCHHHHHHHHhcCCCcEEEEEccC
Confidence 44556876654 4433456999999999999999997743
No 90
>PRK08576 hypothetical protein; Provisional
Probab=36.78 E-value=2.7e+02 Score=29.66 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=25.1
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEe
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (405)
.+|+|++.|.+.|..++..+.+.. .. +.++|+-
T Consensus 235 ~rVvVafSGGKDStvLL~La~k~~----~~-V~aV~iD 267 (438)
T PRK08576 235 WTVIVPWSGGKDSTAALLLAKKAF----GD-VTAVYVD 267 (438)
T ss_pred CCEEEEEcChHHHHHHHHHHHHhC----CC-CEEEEeC
Confidence 389999999999998887776643 12 6777764
No 91
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=36.54 E-value=1.8e+02 Score=25.64 Aligned_cols=41 Identities=7% Similarity=0.076 Sum_probs=31.6
Q ss_pred HhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCC
Q 015548 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQG 147 (405)
Q Consensus 105 ~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s 147 (405)
+++.+|.++.. +-..-+.+.|++.|.++++|.|.+......
T Consensus 26 ~lr~~G~eVi~--LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~ 66 (137)
T PRK02261 26 ALTEAGFEVIN--LGVMTSQEEFIDAAIETDADAILVSSLYGH 66 (137)
T ss_pred HHHHCCCEEEE--CCCCCCHHHHHHHHHHcCCCEEEEcCcccc
Confidence 45678977654 333578999999999999999999766543
No 92
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=36.36 E-value=3.3e+02 Score=27.68 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=28.9
Q ss_pred CCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 14 ~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
+.+++|+..|.+.|--+|..|.+.+...+.. +-+|||-..
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~-~pvl~VDTG 76 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAFRPTRPP-FPLLHVDTT 76 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhhcccCCC-eeEEEeCCC
Confidence 4567899999999998887776655333333 889997543
No 93
>PRK09806 tryptophanase leader peptide; Provisional
Probab=36.27 E-value=34 Score=21.41 Aligned_cols=20 Identities=45% Similarity=0.710 Sum_probs=14.3
Q ss_pred eeEEEEe--eeEEEEeCCceee
Q 015548 382 MLIVHFS--LSWIVIDNNKVDL 401 (405)
Q Consensus 382 ~~~~~~~--~~~~~~~~~~~~~ 401 (405)
|-|.|.. --|.-|||.-||-
T Consensus 1 mnilhicvtskwfnidnkivdh 22 (26)
T PRK09806 1 MNILHICVTSKWFNIDNKIVDH 22 (26)
T ss_pred CcEEEEEEeeeEEeccCeeecc
Confidence 3456654 4699999988874
No 94
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=35.85 E-value=1.6e+02 Score=25.02 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=31.4
Q ss_pred HhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC
Q 015548 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ 146 (405)
Q Consensus 105 ~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~ 146 (405)
+++..|.++... ....+.+.+++.+.+.++|.|+|.....
T Consensus 22 ~l~~~G~~vi~l--G~~vp~e~~~~~a~~~~~d~V~iS~~~~ 61 (122)
T cd02071 22 ALRDAGFEVIYT--GLRQTPEEIVEAAIQEDVDVIGLSSLSG 61 (122)
T ss_pred HHHHCCCEEEEC--CCCCCHHHHHHHHHHcCCCEEEEcccch
Confidence 566789776553 4457889999999999999999977653
No 95
>PRK08349 hypothetical protein; Validated
Probab=35.84 E-value=3.5e+02 Score=24.84 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=25.8
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEec
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (405)
.+++|++.|...|--++.++.+ .|. +++.||+..
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~----~g~-~v~av~~d~ 34 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLR----RGV-EVYPVHFRQ 34 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHH----cCC-eEEEEEEeC
Confidence 3789999999999888865543 344 499999864
No 96
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=35.59 E-value=97 Score=27.16 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=36.7
Q ss_pred HhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCC
Q 015548 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVP 167 (405)
Q Consensus 105 ~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap 167 (405)
+++..|++|... ......+.+++.|.++++|.|+|.+.-.. ....+.. +...+-+..+
T Consensus 25 ~l~~~GfeVi~l--g~~~s~e~~v~aa~e~~adii~iSsl~~~-~~~~~~~--~~~~L~~~g~ 82 (132)
T TIGR00640 25 AYADLGFDVDVG--PLFQTPEEIARQAVEADVHVVGVSSLAGG-HLTLVPA--LRKELDKLGR 82 (132)
T ss_pred HHHhCCcEEEEC--CCCCCHHHHHHHHHHcCCCEEEEcCchhh-hHHHHHH--HHHHHHhcCC
Confidence 455678776554 32457789999999999999999665432 2233332 5555544443
No 97
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=35.47 E-value=4.1e+02 Score=25.54 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=28.6
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCC
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRI 55 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~ 55 (405)
++++-..|.+.|-+|+-+|.+. ... +.|+++.+..
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~----~~v-~~L~t~~~~~ 36 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE----HEV-ISLVNIMPEN 36 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh----Cee-EEEEEEecCC
Confidence 5678899999999999999885 244 8888888764
No 98
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=35.40 E-value=3.5e+02 Score=28.88 Aligned_cols=76 Identities=13% Similarity=0.056 Sum_probs=45.0
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhcc--CCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHH
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIP--EGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK 92 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~--~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~ 92 (405)
...+|+..|.+.|..+|..+.+.+.. .... ...+||+-..+ |--.| + ..
T Consensus 14 ~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~-~k~v~VI~~DT--------------gvE~P------e--------~~ 64 (447)
T TIGR03183 14 IPWVVGYSGGKDSTAVLQLIWNALAALPAEQR-TKKIHVISTDT--------------LVENP------I--------VA 64 (447)
T ss_pred CceEEEeCCCHHHHHHHHHHHHHHHhcccccc-CcceEEEECcC--------------CCccH------H--------HH
Confidence 55799999999999999877764321 1121 34566654432 21112 1 11
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEEe
Q 015548 93 WKTDRLLLPFRNMCAQRRVEVEVKVIE 119 (405)
Q Consensus 93 ~~~~~~L~~~~~~~~~~gV~ve~vvle 119 (405)
+..++.++..+.++++.|+++...++.
T Consensus 65 ~~v~~~l~~i~~~a~~~~lpi~~~~v~ 91 (447)
T TIGR03183 65 AWVNASLERMQEAAQDQGLPIEPHRLT 91 (447)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEecC
Confidence 334555666666777778877766554
No 99
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=34.80 E-value=2.5e+02 Score=27.08 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=27.2
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
++++|+..|.-.|--++.||.+. +. +++.|++.-.
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~----~~-~v~alt~dyg 36 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQ----YD-EVHCVTFDYG 36 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhc----CC-eEEEEEEEeC
Confidence 57999999999999999999652 23 3888887644
No 100
>PRK13054 lipid kinase; Reviewed
Probab=33.73 E-value=2.4e+02 Score=27.68 Aligned_cols=67 Identities=9% Similarity=0.090 Sum_probs=37.8
Q ss_pred HhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhC-CCCceEEEEeCC
Q 015548 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICV-PSFCTVYGVEKG 178 (405)
Q Consensus 105 ~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~a-p~~C~VlVV~kg 178 (405)
.+.+.|++++....+...-+..+++.+...++|.||+ .-|.|-+.. |...+.... ...|++-|++-|
T Consensus 26 ~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv-~GGDGTl~e------vv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 26 LLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIA-GGGDGTINE------VATALAQLEGDARPALGILPLG 93 (300)
T ss_pred HHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEE-ECCccHHHH------HHHHHHhhccCCCCcEEEEeCC
Confidence 3556777776655543333566666555667887765 344444444 333344321 123789999877
No 101
>PRK13337 putative lipid kinase; Reviewed
Probab=33.40 E-value=1.9e+02 Score=28.51 Aligned_cols=68 Identities=12% Similarity=0.034 Sum_probs=37.4
Q ss_pred HHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEeCC
Q 015548 103 RNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (405)
Q Consensus 103 ~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kg 178 (405)
...+.+.|++++....+...-++.+++.+.+.+.|.||+ .-|-|-+...+ ..+... +..+++-|++-|
T Consensus 25 ~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv-~GGDGTl~~vv------~gl~~~-~~~~~lgiiP~G 92 (304)
T PRK13337 25 LQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIA-AGGDGTLNEVV------NGIAEK-ENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEE-EcCCCHHHHHH------HHHhhC-CCCCcEEEECCc
Confidence 334556788777666554444555555555666787665 33444444433 223321 223578888876
No 102
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=33.38 E-value=5.4e+02 Score=26.30 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=25.6
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEe
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (405)
++|+|++.|...|--++.++.+ .+. +++.+|+.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~----~G~-~V~~v~~~ 33 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ----QGY-EVVGVFMK 33 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH----cCC-eEEEEEEE
Confidence 4799999999999888877655 233 48888885
No 103
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=32.77 E-value=4.9e+02 Score=26.50 Aligned_cols=34 Identities=24% Similarity=0.201 Sum_probs=24.2
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
+|+||+.|...|-.++.++.+ .+. +++.+|+...
T Consensus 1 kVlValSGGvDSsvla~lL~~----~g~-~v~~v~i~~~ 34 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE----QGY-EVIGVFMKNW 34 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCC-cEEEEEEecc
Confidence 589999999888877665543 233 3888887643
No 104
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=32.36 E-value=3.3e+02 Score=26.73 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEEEEEe---------cCCHHHHHHHHHHhCCCCEEEEccCC
Q 015548 90 EEKWKTDRLLLPFRNMCAQRRVEVEVKVIE---------SDDVAKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 90 e~~~~~~~~L~~~~~~~~~~gV~ve~vvle---------~Gd~aeaIvd~A~e~~aDlIVmGs~g 145 (405)
+++.....-+..+..+|...|+++..+--+ +...+++|++.+++++.++.++|-.+
T Consensus 81 el~~~v~yQigaL~~~a~~~g~~l~hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~ag 145 (242)
T PF03746_consen 81 ELRDSVLYQIGALQAIAAAEGVPLHHVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLAG 145 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--EEEE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeEEecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcCC
Confidence 334444555666777898899887655332 35689999999999999999998774
No 105
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=32.27 E-value=4.1e+02 Score=27.69 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=26.6
Q ss_pred EEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 17 VAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 17 ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
|+||+.|.-.|--++.|+.+.. +. +++.+|+--.
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~---~~-eV~av~~d~G 34 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKG---GY-EVIAVTADVG 34 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhC---CC-eEEEEEEECC
Confidence 6899999999999999997643 22 4888988644
No 106
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=31.67 E-value=73 Score=28.17 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCCCEEEEccC
Q 015548 123 VAKAIADEVASCNINKLVIGAQ 144 (405)
Q Consensus 123 ~aeaIvd~A~e~~aDlIVmGs~ 144 (405)
..+.|.+++++++++.||||-.
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP 63 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLP 63 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEecc
Confidence 4788999999999999999944
No 107
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=31.62 E-value=2.3e+02 Score=23.72 Aligned_cols=49 Identities=12% Similarity=0.185 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEe-----------cCCHHHHHHHHHHhCCCCEEEEcc
Q 015548 95 TDRLLLPFRNMCAQRRVEVEVKVIE-----------SDDVAKAIADEVASCNINKLVIGA 143 (405)
Q Consensus 95 ~~~~L~~~~~~~~~~gV~ve~vvle-----------~Gd~aeaIvd~A~e~~aDlIVmGs 143 (405)
.++.|++++..|...|+++...++. +.--.+.|.+.++.+++|+||.-.
T Consensus 6 ~~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~ 65 (95)
T PF13167_consen 6 FEESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDN 65 (95)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECC
Confidence 3556777777888888876544332 122467888999999999999964
No 108
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=30.46 E-value=1.1e+02 Score=23.86 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=25.4
Q ss_pred CCeEEEeecCCHHHHHHHHHHHHHhccCCC
Q 015548 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGI 43 (405)
Q Consensus 14 ~~kILVAVDgS~~S~~AL~wAl~~a~~~g~ 43 (405)
.++|.++.|.++.++.|.+-..+.+...+-
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~g~ 72 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKLGL 72 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHCCC
Confidence 489999999999999999888888866543
No 109
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=30.37 E-value=52 Score=32.56 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHhhhh
Q 015548 326 DVNFELEKLRIELRHVRGMYAIAQNEA 352 (405)
Q Consensus 326 ~~~~E~ekLrlELrh~~~my~~aq~E~ 352 (405)
-||.+.+|||-||+++.+.-+-+|+|-
T Consensus 174 Ainl~F~rlK~ele~tk~Klee~Qnel 200 (330)
T KOG2991|consen 174 AINLFFLRLKGELEQTKDKLEEAQNEL 200 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467778899999999999999999983
No 110
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=30.30 E-value=6.4e+02 Score=26.22 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=30.9
Q ss_pred ccCCCCCCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEe
Q 015548 6 IVELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (405)
Q Consensus 6 ~~~~~~~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (405)
.+++|.....+|+|++.|...|--|+.... .+|. ++..||+.
T Consensus 172 ~GGLPvGs~gkvlvllSGGiDSpVAa~ll~----krG~-~V~~v~f~ 213 (381)
T PRK08384 172 WGGLPIGTQGKVVALLSGGIDSPVAAFLMM----KRGV-EVIPVHIY 213 (381)
T ss_pred CCCCccCCCCcEEEEEeCChHHHHHHHHHH----HcCC-eEEEEEEE
Confidence 345677778999999999998886653332 2455 49999985
No 111
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=30.10 E-value=1.4e+02 Score=26.18 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHhCCCCEEEEccC-----CCCCcccccccchhhHHHhhhCCCCceEEEEeC
Q 015548 121 DDVAKAIADEVASCNINKLVIGAQ-----SQGIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (405)
Q Consensus 121 Gd~aeaIvd~A~e~~aDlIVmGs~-----g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~k 177 (405)
....+.|.+++++++++.||+|-. ..+...+... ..+..+.+.-+ .+|..+-.
T Consensus 34 ~~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~--~f~~~L~~~~~--~~v~~~DE 91 (130)
T TIGR00250 34 EPDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQ--KFANRLEGRFG--VPVVLWDE 91 (130)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHH--HHHHHHHHHhC--CCEEEEcC
Confidence 345788999999999999999933 2222222221 13444544333 67877744
No 112
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=29.79 E-value=1.3e+02 Score=30.00 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEE
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV 175 (405)
++.+....+.+++.|++....+.+...-+..+++.+...+.|.||.+.- -|-+.+ |+.-+...-. .+ +-+|
T Consensus 19 ~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GG-DGTv~e------vingl~~~~~-~~-Lgil 89 (301)
T COG1597 19 KKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGG-DGTVNE------VANGLAGTDD-PP-LGIL 89 (301)
T ss_pred hhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecC-cchHHH------HHHHHhcCCC-Cc-eEEe
Confidence 4455555556667888888887775556777888777779999988543 333332 4444544332 12 6677
Q ss_pred eCC
Q 015548 176 EKG 178 (405)
Q Consensus 176 ~kg 178 (405)
+-|
T Consensus 90 P~G 92 (301)
T COG1597 90 PGG 92 (301)
T ss_pred cCC
Confidence 776
No 113
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=29.11 E-value=3.5e+02 Score=29.07 Aligned_cols=47 Identities=9% Similarity=0.061 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCC
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g 145 (405)
.+-|....+-+.+.|++. ++. .|++...|.+++++.+++.|+-...-
T Consensus 54 ~~sL~~L~~~L~~~gi~L--~v~-~~~~~~~l~~~~~~~~~~~v~~n~~~ 100 (461)
T COG0415 54 LQSLQALQQSLAELGIPL--LVR-EGDPEQVLPELAKQLAATTVFWNRDY 100 (461)
T ss_pred HHHHHHHHHHHHHcCCce--EEE-eCCHHHHHHHHHHHhCcceEEeeeee
Confidence 344555555666678763 333 49999999999999998888765554
No 114
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=28.63 E-value=1.3e+02 Score=29.14 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHhCCCCEEEEccC
Q 015548 120 SDDVAKAIADEVASCNINKLVIGAQ 144 (405)
Q Consensus 120 ~Gd~aeaIvd~A~e~~aDlIVmGs~ 144 (405)
+|.+-..-+..+.+.++|.+|+|+-
T Consensus 175 DGGI~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 175 DGGINLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred eCCcCHHHHHHHHHcCCCEEEEEEE
Confidence 5778888888899999999999993
No 115
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=28.38 E-value=49 Score=27.73 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHHHH
Q 015548 325 VDVNFELEKLRIELRHV 341 (405)
Q Consensus 325 ~~~~~E~ekLrlELrh~ 341 (405)
-++..||+||+.+||++
T Consensus 6 s~I~~eI~kLqe~lk~~ 22 (98)
T PRK13848 6 SKIREEIAKLQEQLKQA 22 (98)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46888999999999985
No 116
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=28.18 E-value=4.2e+02 Score=27.84 Aligned_cols=66 Identities=11% Similarity=0.139 Sum_probs=39.1
Q ss_pred CCcEEEEEEecCCHHHHHHHHHHhCCCCEEEE-ccCCCCCcccccccchhhHHHhhhCC--CCceEEEEeCCccccccCC
Q 015548 110 RVEVEVKVIESDDVAKAIADEVASCNINKLVI-GAQSQGIFTWKFKKNNLSSRISICVP--SFCTVYGVEKGKLSSVRPS 186 (405)
Q Consensus 110 gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVm-Gs~g~s~l~r~~lGSsVs~~Vvk~ap--~~C~VlVV~kgk~~~~r~~ 186 (405)
|.-+++.-.-.|.=...|+.+|+.+++|.||+ |.-. +- ..+-+..| .+..|+.++|-.-+.-|+.
T Consensus 214 G~iInT~g~i~~egy~~llhai~~f~v~vviVLg~Er---Ly---------~~lkk~~~~~~~v~vv~lpKsgGv~~Rs~ 281 (415)
T KOG2749|consen 214 GCIINTCGWIEGEGYAALLHAIKAFEVDVVIVLGQER---LY---------SSLKKDLPPKKNVRVVKLPKSGGVVARSK 281 (415)
T ss_pred ceEEeccceeccccHHHHHHHHHHcCccEEEEeccHH---HH---------HHHHhhccccccceEEEecCCCCeEeehH
Confidence 54444332223778899999999999998765 4431 11 11222223 4577888888555555544
Q ss_pred C
Q 015548 187 D 187 (405)
Q Consensus 187 ~ 187 (405)
.
T Consensus 282 ~ 282 (415)
T KOG2749|consen 282 E 282 (415)
T ss_pred H
Confidence 3
No 117
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=28.15 E-value=2e+02 Score=25.29 Aligned_cols=39 Identities=5% Similarity=0.038 Sum_probs=29.4
Q ss_pred HhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCC
Q 015548 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 105 ~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g 145 (405)
+++..|.++..+ --.-+.+.+++.|.++++|.|.|.+--
T Consensus 22 ~L~~~GfeVidL--G~~v~~e~~v~aa~~~~adiVglS~L~ 60 (128)
T cd02072 22 AFTEAGFNVVNL--GVLSPQEEFIDAAIETDADAILVSSLY 60 (128)
T ss_pred HHHHCCCEEEEC--CCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 345678776554 335788999999999999999886543
No 118
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=27.92 E-value=5.4e+02 Score=24.57 Aligned_cols=93 Identities=14% Similarity=0.153 Sum_probs=46.6
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHH
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~ 95 (405)
|+++-..|.+.|-.|+.+|++. ... ..|++..+...... +--.++. +.++ .+
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~----~~v-~~L~t~~~~~~~s~----------~~H~~~~-----~~~~-------~q- 53 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ----HEV-VCLLTMVPEEEDSY----------MFHGVNI-----ELIE-------AQ- 53 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT-----EE-EEEEEEEESTTT-S----------SS-STTG-----TCHH-------HH-
T ss_pred cEEEEEcCcHHHHHHHHHHHHh----CCc-cEEEEeccCCCCcc----------cccccCH-----HHHH-------HH-
Confidence 5677789999999999999875 233 68888887643110 0001111 1110 11
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEe--cCCHHHHHHHHHHhCCCCEEEEccCCC
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIE--SDDVAKAIADEVASCNINKLVIGAQSQ 146 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle--~Gd~aeaIvd~A~e~~aDlIVmGs~g~ 146 (405)
++.-|++....-+. .++-.+.+.+..++.+++.+|-|.=-.
T Consensus 54 ----------A~algipl~~~~~~g~~~~~~~~l~~~l~~~~v~~vv~GdI~~ 96 (218)
T PF01902_consen 54 ----------AEALGIPLIEIPTSGDEEDYVEDLKEALKELKVEAVVFGDIDS 96 (218)
T ss_dssp ----------HHHHT--EEEEEE---CCCHHHHHHHHHCTC--SEEE--TTS-
T ss_pred ----------HHHCCCCEEEEEccCccchhhHHHHHHHHHcCCCEEEECcCCc
Confidence 11235554443333 245556677777888888888887643
No 119
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=27.88 E-value=1.2e+02 Score=27.28 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCCEEEEccCCCCCcccccccchhh---HHHhhhCCCCceEEEEeCC
Q 015548 126 AIADEVASCNINKLVIGAQSQGIFTWKFKKNNLS---SRISICVPSFCTVYGVEKG 178 (405)
Q Consensus 126 aIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs---~~Vvk~ap~~C~VlVV~kg 178 (405)
++..+.+++++|.||+=.|-..| +|.|+-++ +.+++..+ .|+|-+|+.-
T Consensus 52 ~f~kl~~dy~Vd~VvIk~R~~KG---KfAGga~~FKmEaaIQL~~-~~~V~lvs~~ 103 (138)
T PF11215_consen 52 TFAKLMEDYKVDKVVIKERATKG---KFAGGAVGFKMEAAIQLID-DVEVELVSPA 103 (138)
T ss_pred HHHHHHHHcCCCEEEEEecccCC---CccCCchhHHHHHHHHhcC-CCcEEEECHH
Confidence 44566677888888887776543 66666444 34455554 4889888653
No 120
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=27.45 E-value=1.7e+02 Score=29.10 Aligned_cols=47 Identities=9% Similarity=0.192 Sum_probs=27.4
Q ss_pred EEecCCHHHHHHHHHHhC-------CCCEEEEccCCCCCccccc-cc-chhhHHHhh
Q 015548 117 VIESDDVAKAIADEVASC-------NINKLVIGAQSQGIFTWKF-KK-NNLSSRISI 164 (405)
Q Consensus 117 vle~Gd~aeaIvd~A~e~-------~aDlIVmGs~g~s~l~r~~-lG-SsVs~~Vvk 164 (405)
.+.|.+.+..|++..+.. .+|+||+|+.|.+ +.... +. -.|+..|..
T Consensus 50 ~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs-~eDL~~FN~e~varai~~ 105 (319)
T PF02601_consen 50 SVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS-IEDLWAFNDEEVARAIAA 105 (319)
T ss_pred cccccchHHHHHHHHHHHHhccccccccEEEEecCCCC-hHHhcccChHHHHHHHHh
Confidence 345566677776554443 4899999877754 33322 21 136666653
No 121
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=26.46 E-value=5.1e+02 Score=27.49 Aligned_cols=47 Identities=11% Similarity=0.086 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEec---CCHHHHHHHHHHhCCCCEEEEccC
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIES---DDVAKAIADEVASCNINKLVIGAQ 144 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle~---Gd~aeaIvd~A~e~~aDlIVmGs~ 144 (405)
.+-|....+-+++.|+.. +++.+ |++.+.|.+++++++|+.|+.-..
T Consensus 56 ~esL~~L~~~L~~~g~~L--~v~~g~~~g~~~~vl~~l~~~~~i~~v~~~~~ 105 (472)
T PRK10674 56 NAQLNALQIALAEKGIPL--LFHEVDDFAASVEWLKQFCQQHQVTHLFYNYQ 105 (472)
T ss_pred HHHHHHHHHHHHHcCCce--EEEecCCcCCHHHHHHHHHHHcCCCEEEEecc
Confidence 344555555666677665 33442 689999999999999999988433
No 122
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=26.38 E-value=2.3e+02 Score=28.37 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=37.1
Q ss_pred hhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCcccccccchhhHHHhhhCCCCceEEEEeCC
Q 015548 107 AQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (405)
Q Consensus 107 ~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~---s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kg 178 (405)
.+.||++..+ . +...-.++. .+|++++|+.+- |++..+ .|+....-+.++.. .||||++.-
T Consensus 163 ~~~gI~vtlI--~-Dsa~~~~m~-----~vd~VivGad~v~~nG~v~nk-iGT~~lA~~Ak~~~--vPv~V~a~~ 226 (301)
T TIGR00511 163 RDYGIPVTLI--V-DSAVRYFMK-----EVDHVVVGADAITANGALINK-IGTSQLALAAREAR--VPFMVAAET 226 (301)
T ss_pred HHCCCCEEEE--e-hhHHHHHHH-----hCCEEEECccEEecCCCEEEH-HhHHHHHHHHHHhC--CCEEEEccc
Confidence 3568887654 3 233333332 299999999973 334433 37543344445543 899999875
No 123
>PRK13055 putative lipid kinase; Reviewed
Probab=26.07 E-value=3e+02 Score=27.64 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=38.8
Q ss_pred HHHHHHHhhhcCCcEEEEEEe-cCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEeC
Q 015548 99 LLPFRNMCAQRRVEVEVKVIE-SDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (405)
Q Consensus 99 L~~~~~~~~~~gV~ve~vvle-~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~k 177 (405)
+...+..+.+.|++++....+ .+.-++.+++.+.+.++|.||+. -|-|.+...+ ..+... ....++-|++-
T Consensus 22 ~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~-GGDGTl~evv------ngl~~~-~~~~~LgiiP~ 93 (334)
T PRK13055 22 VADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAA-GGDGTINEVV------NGIAPL-EKRPKMAIIPA 93 (334)
T ss_pred HHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEE-CCCCHHHHHH------HHHhhc-CCCCcEEEECC
Confidence 344445566678877765444 22345556665556678877764 3444444432 333321 22256777876
Q ss_pred C
Q 015548 178 G 178 (405)
Q Consensus 178 g 178 (405)
|
T Consensus 94 G 94 (334)
T PRK13055 94 G 94 (334)
T ss_pred C
Confidence 6
No 124
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=25.96 E-value=1.3e+02 Score=29.33 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=32.1
Q ss_pred hcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCcccccccchhhHHHhhhCCCCceEEEEeCC
Q 015548 108 QRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (405)
Q Consensus 108 ~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~---s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kg 178 (405)
+.|++|..+ .+. . +..+.++ ++|++++|+..- |++..+ .|+....-+++.- ..||||++.-
T Consensus 156 ~~gi~v~~i--~d~-~---~~~~m~~-~vd~VliGad~v~~nG~v~nk-~Gt~~~a~~Ak~~--~vPv~v~~~~ 219 (282)
T PF01008_consen 156 EAGIPVTLI--PDS-A---VGYVMPR-DVDKVLIGADAVLANGGVVNK-VGTLQLALAAKEF--NVPVYVLAES 219 (282)
T ss_dssp HTT-EEEEE---GG-G---HHHHHHC-TESEEEEE-SEEETTS-EEEE-TTHHHHHHHHHHT--T-EEEEE--G
T ss_pred hcceeEEEE--ech-H---HHHHHHH-hCCeeEEeeeEEecCCCEeeh-hhHHHHHHHHHhh--CCCEEEEccc
Confidence 468876554 322 2 2333344 799999999963 434443 3764444455554 4999999775
No 125
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=25.96 E-value=2.2e+02 Score=25.19 Aligned_cols=69 Identities=7% Similarity=-0.059 Sum_probs=41.7
Q ss_pred HhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEeCCcc
Q 015548 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKL 180 (405)
Q Consensus 105 ~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kgk~ 180 (405)
+++..|.++..+ --.-+.+.+++.|.++++|.|.|.+.-..... .+.. +...+-+.-... +.|+..|..
T Consensus 24 ~l~~~GfeVi~L--G~~v~~e~~v~aa~~~~adiVglS~l~~~~~~-~~~~--~~~~l~~~gl~~--~~vivGG~~ 92 (134)
T TIGR01501 24 AFTNAGFNVVNL--GVLSPQEEFIKAAIETKADAILVSSLYGHGEI-DCKG--LRQKCDEAGLEG--ILLYVGGNL 92 (134)
T ss_pred HHHHCCCEEEEC--CCCCCHHHHHHHHHHcCCCEEEEecccccCHH-HHHH--HHHHHHHCCCCC--CEEEecCCc
Confidence 345678876554 33578899999999999999988665433221 1222 444444433322 335556654
No 126
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=25.44 E-value=4.1e+02 Score=25.02 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=24.6
Q ss_pred eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
|++|.+.|.-.|--++-||.+.. . +++.||+.-.
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~~----~-~v~al~~~YG 34 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKEG----Y-EVYALTFDYG 34 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH-----S-EEEEEEEESS
T ss_pred CEEEEeCCCHHHHHHHHHHHHcC----C-eEEEEEEECC
Confidence 67899999999999999987743 3 4888887633
No 127
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=25.30 E-value=40 Score=31.80 Aligned_cols=43 Identities=9% Similarity=0.360 Sum_probs=27.5
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEcc
Q 015548 99 LLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGA 143 (405)
Q Consensus 99 L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs 143 (405)
+..++++..++|..++.. +. |.+-..-+..+.+.++|.+|+|+
T Consensus 153 I~~l~~~~~~~~~~~~I~-vD-GGI~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 153 IRELRKLIPENGLDFEIE-VD-GGINEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp HHHHHHHHHHHTCGSEEE-EE-SSESTTTHHHHHHHT--EEEESH
T ss_pred HHHHHHHHHhcCCceEEE-EE-CCCCHHHHHHHHHcCCCEEEECH
Confidence 344455555556555444 34 77777777778888999999996
No 128
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=25.23 E-value=1.5e+02 Score=28.92 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHhCCCCEEEEccC
Q 015548 121 DDVAKAIADEVASCNINKLVIGAQ 144 (405)
Q Consensus 121 Gd~aeaIvd~A~e~~aDlIVmGs~ 144 (405)
+-+..++.+.|++.++|.++.|--
T Consensus 140 ~~I~~~V~~k~re~di~~vafGDl 163 (255)
T COG1365 140 SMIENAVMDKARELDIDVVAFGDL 163 (255)
T ss_pred HHHHHHHHHHHHhcCCeEEEEccc
Confidence 557889999999999999998853
No 129
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=24.96 E-value=49 Score=26.93 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=23.3
Q ss_pred hhhcCCcEEEEEEecCCH-H-H---HHHHHHHhCCCCEEEEccCC
Q 015548 106 CAQRRVEVEVKVIESDDV-A-K---AIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 106 ~~~~gV~ve~vvle~Gd~-a-e---aIvd~A~e~~aDlIVmGs~g 145 (405)
++++||++..++-.-+.+ . . .|.+++++..+|+||.=...
T Consensus 26 L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~ 70 (95)
T PF02142_consen 26 LKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYP 70 (95)
T ss_dssp HHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--T
T ss_pred HHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCC
Confidence 346799855543322333 2 2 49999999999988874443
No 130
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=24.62 E-value=2.4e+02 Score=29.10 Aligned_cols=50 Identities=14% Similarity=0.033 Sum_probs=37.0
Q ss_pred HHHhhhcCCcEEEEEEecCCHHHHH---HHHHHhCCCCEEEEccCCCCCccccc
Q 015548 103 RNMCAQRRVEVEVKVIESDDVAKAI---ADEVASCNINKLVIGAQSQGIFTWKF 153 (405)
Q Consensus 103 ~~~~~~~gV~ve~vvle~Gd~aeaI---vd~A~e~~aDlIVmGs~g~s~l~r~~ 153 (405)
..+.++.|+++...- +++||+..+ +++|+..++|.|++=+.||-.-+.-+
T Consensus 187 ~~w~er~gv~vI~~~-~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nL 239 (340)
T COG0552 187 EVWGERLGVPVISGK-EGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNL 239 (340)
T ss_pred HHHHHHhCCeEEccC-CCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhH
Confidence 345666788876643 679999877 46788999999999999986544433
No 131
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=24.53 E-value=4.7e+02 Score=25.33 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=36.6
Q ss_pred HHHHHhhhcCCcEEEEEEec-CCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEeCC
Q 015548 101 PFRNMCAQRRVEVEVKVIES-DDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (405)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~-Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kg 178 (405)
...+.+.+.|+++.....+. |+.. .+++.+.+.++|.||+ .-|-|-+.+.+ ..+... ....++-+++-|
T Consensus 23 ~i~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~d~ivv-~GGDGTl~~v~------~~l~~~-~~~~~lgiiP~G 92 (293)
T TIGR00147 23 EVIMLLREEGMEIHVRVTWEKGDAA-RYVEEARKFGVDTVIA-GGGDGTINEVV------NALIQL-DDIPALGILPLG 92 (293)
T ss_pred HHHHHHHHCCCEEEEEEecCcccHH-HHHHHHHhcCCCEEEE-ECCCChHHHHH------HHHhcC-CCCCcEEEEcCc
Confidence 33445566788876655443 3444 4454455557887776 44545444432 333321 111357778876
No 132
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=24.49 E-value=6.8e+02 Score=27.25 Aligned_cols=68 Identities=13% Similarity=0.066 Sum_probs=44.5
Q ss_pred hhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC--CCcccccccchhhHHHhhhCCCCceEEEEeCCcccccc
Q 015548 107 AQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ--GIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVR 184 (405)
Q Consensus 107 ~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~--s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kgk~~~~r 184 (405)
..+||.|..+++. .+..|. ..++.|.+|+|.. +|..-.=.|. ..-.++.++. .+||+|+|..--++.|
T Consensus 407 v~~GinctYv~I~---a~syim-----~evtkvfLGahailsNG~vysR~GT-a~valvAna~-nVPVlVCCE~yKF~eR 476 (556)
T KOG1467|consen 407 VDRGINCTYVLIN---AASYIM-----LEVTKVFLGAHAILSNGAVYSRVGT-ACVALVANAF-NVPVLVCCEAYKFHER 476 (556)
T ss_pred HHcCCCeEEEEeh---hHHHHH-----HhcceeeechhhhhcCcchhhhcch-HHHHHHhccc-CCCEEEEechhhhhhh
Confidence 3579999998775 444444 3478999999974 2322112364 3344445553 5999999998766666
No 133
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=24.13 E-value=2.1e+02 Score=28.80 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=26.7
Q ss_pred HHHHHHhhhcCCcEEEEEEecCC----HHHHHHHHHHhCCCCEEE-Ec
Q 015548 100 LPFRNMCAQRRVEVEVKVIESDD----VAKAIADEVASCNINKLV-IG 142 (405)
Q Consensus 100 ~~~~~~~~~~gV~ve~vvle~Gd----~aeaIvd~A~e~~aDlIV-mG 142 (405)
++..+.+++.|+.++..+.. |+ ..+.+++.+++.++|.|| +|
T Consensus 39 ~~v~~~l~~~~i~~~~~~~~-~~p~~~~v~~~~~~~~~~~~d~IIavG 85 (349)
T cd08550 39 PRFEAALAKSIIVVDVIVFG-GECSTEEVVKALCGAEEQEADVIIGVG 85 (349)
T ss_pred HHHHHHHHhcCCeeEEEEcC-CCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 44444555567765555443 33 455677888899999887 55
No 134
>PF14182 YgaB: YgaB-like protein
Probab=23.68 E-value=1.2e+02 Score=24.74 Aligned_cols=29 Identities=14% Similarity=0.351 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHhhhhh
Q 015548 325 VDVNFELEKLRIELRHVRGMYAIAQNEAN 353 (405)
Q Consensus 325 ~~~~~E~ekLrlELrh~~~my~~aq~E~~ 353 (405)
.++-.||.++|.+|+.+++++.---.|.|
T Consensus 43 ~~i~~EI~~mkk~Lk~Iq~~Fe~QTeeVI 71 (79)
T PF14182_consen 43 HSIQEEISQMKKELKEIQRVFEKQTEEVI 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999975444443
No 135
>PF13362 Toprim_3: Toprim domain
Probab=22.82 E-value=1.6e+02 Score=23.71 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=26.5
Q ss_pred CCCCeEEEeecCCHH--HHHHHHHHHHHhccCCC
Q 015548 12 SPALSVAVAVKGNRK--SRYAVLWALEKFIPEGI 43 (405)
Q Consensus 12 ~~~~kILVAVDgS~~--S~~AL~wAl~~a~~~g~ 43 (405)
...++|+|+.|.+.. ++.+.+-+.+.+...+.
T Consensus 39 ~~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~ 72 (96)
T PF13362_consen 39 EPGRRVIIAADNDKANEGQKAAEKAAERLEAAGI 72 (96)
T ss_pred CCCCeEEEEECCCCchhhHHHHHHHHHHHHhCCC
Confidence 478999999999988 88888888888866543
No 136
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=22.80 E-value=1.2e+02 Score=28.24 Aligned_cols=61 Identities=25% Similarity=0.242 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEE--eCCccccccCC
Q 015548 123 VAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV--EKGKLSSVRPS 186 (405)
Q Consensus 123 ~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV--~kgk~~~~r~~ 186 (405)
.+++|.+++++.++|+|++|....++..|-+.+- ++.++ .++-...|.-+ ..|++...|+.
T Consensus 96 ~a~al~~~i~~~~p~lVL~~~t~~~~~grdlapr-lAarL--ga~lvsdv~~l~~~~~~~~~~r~~ 158 (202)
T cd01714 96 TAKALAAAIKKIGVDLILTGKQSIDGDTGQVGPL-LAELL--GWPQITYVSKIEIEGGKVTVEREL 158 (202)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHH-HHHHh--CCCccceEEEEEEeCCEEEEEEEc
Confidence 4667889999989999999998865444555553 66655 33433344433 35666666653
No 137
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=22.77 E-value=3.7e+02 Score=24.88 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=31.7
Q ss_pred HhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCC
Q 015548 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGI 148 (405)
Q Consensus 105 ~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~ 148 (405)
+++..|.++.. +..+-|.+.|++.+.++++|+|.+.......
T Consensus 105 ~l~~~G~~vi~--lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~ 146 (201)
T cd02070 105 MLEANGFEVID--LGRDVPPEEFVEAVKEHKPDILGLSALMTTT 146 (201)
T ss_pred HHHHCCCEEEE--CCCCCCHHHHHHHHHHcCCCEEEEecccccc
Confidence 56678877633 3335689999999999999999987755443
No 138
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=22.73 E-value=2.5e+02 Score=29.97 Aligned_cols=91 Identities=15% Similarity=0.032 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEec-CCHHHHHHHHHHhCCCCEEEEccCCCC---Cccccc------
Q 015548 84 AAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIES-DDVAKAIADEVASCNINKLVIGAQSQG---IFTWKF------ 153 (405)
Q Consensus 84 ~~~~~~e~~~~~~~~L~~~~~~~~~~gV~ve~vvle~-Gd~aeaIvd~A~e~~aDlIVmGs~g~s---~l~r~~------ 153 (405)
.++.+.+.-+....+|..+.+-+++.|.++-. .++ .|..+.|-+.+.+.+.+.||.+-+--+ ++..++
T Consensus 52 ~~eik~~~lenLd~~l~~~~~~v~~~Gg~vy~--A~~aedA~~ii~~iv~~k~~k~vVKsKSmvseEIgln~~Le~~G~e 129 (459)
T COG1139 52 AREIKLHVLENLDEYLEQLEENVTRNGGHVYF--AKDAEDAREIIGEIVGEKNGKKVVKSKSMVSEEIGLNHYLEEKGIE 129 (459)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHcCCEEEE--eCCHHHHHHHHHHHHhhccCcEEEEecchhHHHhhhHHHHHHcCCe
Confidence 34445555556667778888888888977643 333 456666678999999999999876322 233322
Q ss_pred -ccchhhHHHhhhCCCCceEEEEeC
Q 015548 154 -KKNNLSSRISICVPSFCTVYGVEK 177 (405)
Q Consensus 154 -lGSsVs~~Vvk~ap~~C~VlVV~k 177 (405)
..+++.++|++-+.+ -|.++|-+
T Consensus 130 v~ETDLGE~IlQl~~~-~PsHIV~P 153 (459)
T COG1139 130 VWETDLGELILQLAGE-PPSHIVAP 153 (459)
T ss_pred EEEccHHHHHHHhcCC-CCcceecc
Confidence 234677888888743 45555543
No 139
>PRK06247 pyruvate kinase; Provisional
Probab=22.66 E-value=1.2e+02 Score=32.63 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEeCCccc
Q 015548 122 DVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLS 181 (405)
Q Consensus 122 d~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kgk~~ 181 (405)
.++.+.++.|++.++.+||+-+.. |. ++..|.+.-| .|||+++...+.+
T Consensus 356 ~ia~sa~~~A~~l~a~~Iv~~T~s---------G~-ta~~isk~RP-~~pI~a~t~~~~~ 404 (476)
T PRK06247 356 AISYAARDIAERLDLAALVAYTSS---------GD-TALRAARERP-PLPILALTPNPET 404 (476)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCC---------cH-HHHHHHhhCC-CCCEEEECCCHHH
Confidence 466777789999999999996654 54 7788888777 5999999876554
No 140
>PRK05406 LamB/YcsF family protein; Provisional
Probab=22.53 E-value=2.3e+02 Score=27.84 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEEe---------cCCHHHHHHHHHHhCCCCEEEEccCC
Q 015548 92 KWKTDRLLLPFRNMCAQRRVEVEVKVIE---------SDDVAKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 92 ~~~~~~~L~~~~~~~~~~gV~ve~vvle---------~Gd~aeaIvd~A~e~~aDlIVmGs~g 145 (405)
+.....-+.....+|+..|.++..+--+ +...+++|++.++..+.+++++|-.+
T Consensus 85 ~~~v~yQigAL~~~a~~~g~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~~ 147 (246)
T PRK05406 85 YALVLYQIGALQAIARAAGGRVSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLAG 147 (246)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 3444455666777899999887655322 35689999999999999999998766
No 141
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=22.45 E-value=2.2e+02 Score=28.66 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=38.0
Q ss_pred hhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCcccccccchhhHHHhhhCCCCceEEEEeCC
Q 015548 107 AQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (405)
Q Consensus 107 ~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~---s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kg 178 (405)
.+.||++..+ . +...-.+. +...+|++++|+.+- |++..+ .|+....-+.+... .||||++.-
T Consensus 175 ~~~gI~vtlI--~-Dsa~~~~m---~~~~vd~VlvGAd~v~~nG~v~nk-~GT~~lA~~Ak~~~--vPv~V~a~s 240 (303)
T TIGR00524 175 MQDGIDVTLI--T-DSMAAYFM---QKGEIDAVIVGADRIARNGDVANK-IGTYQLAVLAKEFR--IPFFVAAPL 240 (303)
T ss_pred HHCCCCEEEE--C-hhHHHHHc---cccCCCEEEEcccEEecCCCEeEh-hhHHHHHHHHHHhC--CCEEEeccc
Confidence 3568887654 2 22333333 345799999999973 334443 37644344445543 899999874
No 142
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=22.45 E-value=5e+02 Score=25.37 Aligned_cols=67 Identities=9% Similarity=0.066 Sum_probs=36.9
Q ss_pred HhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhC-CCCceEEEEeCC
Q 015548 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICV-PSFCTVYGVEKG 178 (405)
Q Consensus 105 ~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~a-p~~C~VlVV~kg 178 (405)
.+.+.|++++....+...-+..+++.+.+.+.|.||+ .-|-|-+...+ ..+...- ...+++-+++-|
T Consensus 22 ~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~-~GGDGTi~ev~------ngl~~~~~~~~~~lgiiP~G 89 (293)
T TIGR03702 22 DLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIA-GGGDGTLREVA------TALAQIRDDAAPALGLLPLG 89 (293)
T ss_pred HHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEE-EcCChHHHHHH------HHHHhhCCCCCCcEEEEcCC
Confidence 3456788776665544334566666655666776654 44444444433 3333221 112578888876
No 143
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=22.38 E-value=74 Score=26.62 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHH
Q 015548 325 VDVNFELEKLRIELRHV 341 (405)
Q Consensus 325 ~~~~~E~ekLrlELrh~ 341 (405)
.++..||+||+-+||+.
T Consensus 5 s~I~~eIekLqe~lk~~ 21 (92)
T PF07820_consen 5 SKIREEIEKLQEQLKQA 21 (92)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57889999999999984
No 144
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=22.36 E-value=6.6e+02 Score=23.66 Aligned_cols=89 Identities=20% Similarity=0.255 Sum_probs=50.5
Q ss_pred EeecCCHHHHHHHHHHHHHhccCCCCEE-EEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 015548 19 VAVKGNRKSRYAVLWALEKFIPEGINLF-KLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDR 97 (405)
Q Consensus 19 VAVDgS~~S~~AL~wAl~~a~~~g~~~l-~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~~~ 97 (405)
|+..|...|-.|+.||.+ .|. ++ .++++.+.... .+. ....
T Consensus 2 vl~SGGkDS~~al~~a~~----~G~-~v~~l~~~~~~~~~--------------~~~-~~~~------------------ 43 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALE----EGH-EVRCLITVVPENEE--------------SYM-FHTP------------------ 43 (218)
T ss_pred eeecCcHHHHHHHHHHHH----cCC-EEEEEEEeccCCCC--------------ccc-cCCC------------------
Confidence 678899999999988876 233 35 57787755310 000 0000
Q ss_pred HHHHHHHHhhhcCCcEEEEEEec------CCHHHHHHHHHHhCCCCEEEEccCCC
Q 015548 98 LLLPFRNMCAQRRVEVEVKVIES------DDVAKAIADEVASCNINKLVIGAQSQ 146 (405)
Q Consensus 98 ~L~~~~~~~~~~gV~ve~vvle~------Gd~aeaIvd~A~e~~aDlIVmGs~g~ 146 (405)
-++..+..|+.-|++...+-+.. .+..+++.+++++ +++.||.|+-..
T Consensus 44 ~~~~~~~~A~~lgip~~~i~~~~~~~~~~~~l~~~l~~~~~~-g~~~vv~G~i~s 97 (218)
T TIGR03679 44 NIELTRLQAEALGIPLVKIETSGEKEKEVEDLKGALKELKRE-GVEGIVTGAIAS 97 (218)
T ss_pred CHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHHHHHHHHHc-CCCEEEECCccc
Confidence 01122334556677765443321 1144555555554 999999999874
No 145
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=22.11 E-value=1.4e+02 Score=25.47 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=25.8
Q ss_pred cCCcEEEEEE--ecCCHHHHHHHHHHhCCCCEEEEccC
Q 015548 109 RRVEVEVKVI--ESDDVAKAIADEVASCNINKLVIGAQ 144 (405)
Q Consensus 109 ~gV~ve~vvl--e~Gd~aeaIvd~A~e~~aDlIVmGs~ 144 (405)
.|++++.+-+ .+|+ ..|.+.+++..+|+||-=..
T Consensus 44 ~Gi~v~~vk~~~~~g~--~~i~~~i~~g~i~~VInt~~ 79 (115)
T cd01422 44 TGLTVNRMKSGPLGGD--QQIGALIAEGEIDAVIFFRD 79 (115)
T ss_pred hCCcEEEEecCCCCch--hHHHHHHHcCceeEEEEcCC
Confidence 5898887733 3455 66999999999999986544
No 146
>PTZ00323 NAD+ synthase; Provisional
Probab=22.06 E-value=8.1e+02 Score=24.54 Aligned_cols=43 Identities=9% Similarity=-0.009 Sum_probs=26.8
Q ss_pred CCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 12 ~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
.+.++++||+.|.-.|--++.-|.+-+.....+...++.+..|
T Consensus 44 ~g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P 86 (294)
T PTZ00323 44 CGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQP 86 (294)
T ss_pred cCCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECC
Confidence 3468999999999877777766766443322221444444444
No 147
>PRK00861 putative lipid kinase; Reviewed
Probab=21.99 E-value=4.6e+02 Score=25.60 Aligned_cols=58 Identities=9% Similarity=0.130 Sum_probs=33.9
Q ss_pred CcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEeCC
Q 015548 111 VEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (405)
Q Consensus 111 V~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kg 178 (405)
++++....+...-+..+++.+.+.+.|+||+ .-|-|-+... ...+... .+++-|++-|
T Consensus 33 ~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~-~GGDGTl~ev------v~~l~~~---~~~lgviP~G 90 (300)
T PRK00861 33 MDLDIYLTTPEIGADQLAQEAIERGAELIIA-SGGDGTLSAV------AGALIGT---DIPLGIIPRG 90 (300)
T ss_pred CceEEEEccCCCCHHHHHHHHHhcCCCEEEE-ECChHHHHHH------HHHHhcC---CCcEEEEcCC
Confidence 5566555554555677777776777887765 3344434442 3333322 2678888777
No 148
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=21.83 E-value=9.6e+02 Score=25.33 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCCCcccccc
Q 015548 123 VAKAIADEVASCNINKLVIGAQSQGIFTWKFK 154 (405)
Q Consensus 123 ~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~l 154 (405)
+++.++++|++.+++.|.=|..|+|.-.-.|-
T Consensus 100 Iak~lVe~A~k~ga~avaHGcTGKGNDQvRFe 131 (403)
T COG0137 100 IAKKLVEAAKKEGADAVAHGCTGKGNDQVRFE 131 (403)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCCCceeeee
Confidence 68899999999999999999999987554453
No 149
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=21.54 E-value=1.9e+02 Score=24.48 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=27.5
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCC
Q 015548 99 LLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 99 L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g 145 (405)
....++.|+++|++++.... ++. .+-++....++|+|++|.+=
T Consensus 18 a~k~k~~~~e~gi~~~i~a~---~~~-e~~~~~~~~~~DvIll~PQi 60 (104)
T PRK09590 18 AKKTTEYLKEQGKDIEVDAI---TAT-EGEKAIAAAEYDLYLVSPQT 60 (104)
T ss_pred HHHHHHHHHHCCCceEEEEe---cHH-HHHHhhccCCCCEEEEChHH
Confidence 34445667788998765432 233 34455555678999998775
No 150
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=21.47 E-value=3.1e+02 Score=27.59 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=36.5
Q ss_pred hhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCcccccccchhhHHHhhhCCCCceEEEEeCC
Q 015548 107 AQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (405)
Q Consensus 107 ~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~---s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kg 178 (405)
.+.||++..+ .+. ..-.+. .+ +|++++|+.+- |++..+ .|+....-+++.- ..||||++.-
T Consensus 168 ~~~GI~vtlI--~Ds-av~~~m---~~--vd~VivGAd~v~~nG~v~nk-iGT~~~A~~Ak~~--~vPv~V~a~~ 231 (310)
T PRK08535 168 AEYGIPVTLI--VDS-AVRYFM---KD--VDKVVVGADAITANGAVINK-IGTSQIALAAHEA--RVPFMVAAET 231 (310)
T ss_pred HHCCCCEEEE--ehh-HHHHHH---Hh--CCEEEECccEEecCCCEEeH-HhHHHHHHHHHHh--CCCEEEeccc
Confidence 3568887654 323 333333 22 99999999973 334433 3754334444544 3899999774
No 151
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=21.20 E-value=7.1e+02 Score=24.83 Aligned_cols=86 Identities=9% Similarity=0.081 Sum_probs=51.6
Q ss_pred CCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHH
Q 015548 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (405)
Q Consensus 12 ~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~ 91 (405)
....||+|-+.|+-++..||-+|.+.- .- + .-++-|+... ++
T Consensus 91 ~~~~kiavl~Sg~g~nl~al~~~~~~~-~l-~--~~i~~visn~-------------------------~~--------- 132 (289)
T PRK13010 91 GQRPKVVIMVSKFDHCLNDLLYRWRMG-EL-D--MDIVGIISNH-------------------------PD--------- 132 (289)
T ss_pred CCCeEEEEEEeCCCccHHHHHHHHHCC-CC-C--cEEEEEEECC-------------------------hh---------
Confidence 345688999999988888888886522 11 1 2233333221 00
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEEec---CCHHHHHHHHHHhCCCCEEEEccCC
Q 015548 92 KWKTDRLLLPFRNMCAQRRVEVEVKVIES---DDVAKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 92 ~~~~~~~L~~~~~~~~~~gV~ve~vvle~---Gd~aeaIvd~A~e~~aDlIVmGs~g 145 (405)
+ .+.+++.||++..+-... .+....+++..+++++|+||+..-.
T Consensus 133 ---~-------~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagym 179 (289)
T PRK13010 133 ---L-------QPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYM 179 (289)
T ss_pred ---H-------HHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehhh
Confidence 0 134566788875432111 2235578899999999999995433
No 152
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=21.06 E-value=5.2e+02 Score=21.93 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=42.7
Q ss_pred HHHHhhhcCCcEEEEEEecC--------CHHHHHHHHHHhCCCCEEEEccCCCCCcccccccc-hhhHHHhhhCCCCceE
Q 015548 102 FRNMCAQRRVEVEVKVIESD--------DVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKN-NLSSRISICVPSFCTV 172 (405)
Q Consensus 102 ~~~~~~~~gV~ve~vvle~G--------d~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGS-sVs~~Vvk~ap~~C~V 172 (405)
.+++|.++|..+..+..+.| .--..+++.+++..+|.||+-...+ |.|-.... .+- ..++... +.|
T Consensus 24 ~~~~a~~~g~~i~~~~~d~~~Sg~~~~Rp~l~~ll~~~~~g~~~~ivv~~~~R--l~R~~~~~~~~~-~~l~~~g--i~l 98 (148)
T smart00857 24 LRAYAKANGWEVVRIYEDEGVSGKKADRPGLQRLLADLRAGDIDVLVVYKLDR--LGRSLRDLLALL-ELLEKKG--VRL 98 (148)
T ss_pred HHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHcCCCCEEEEeccch--hhCcHHHHHHHH-HHHHHCC--CEE
Confidence 44567788887655544432 3467788889999999999977765 23322210 011 2333333 777
Q ss_pred EEEeCC
Q 015548 173 YGVEKG 178 (405)
Q Consensus 173 lVV~kg 178 (405)
+++..|
T Consensus 99 ~~~~~~ 104 (148)
T smart00857 99 VSVTEG 104 (148)
T ss_pred EECcCC
Confidence 777543
No 153
>PRK12569 hypothetical protein; Provisional
Probab=20.82 E-value=2.6e+02 Score=27.49 Aligned_cols=54 Identities=9% Similarity=0.062 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEE---------ecCCHHHHHHHHHHhCCCCEEEEccCC
Q 015548 92 KWKTDRLLLPFRNMCAQRRVEVEVKVI---------ESDDVAKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 92 ~~~~~~~L~~~~~~~~~~gV~ve~vvl---------e~Gd~aeaIvd~A~e~~aDlIVmGs~g 145 (405)
++....-+..+..+|...|.++..+-- .+...+++|++.+++.+.+++++|..+
T Consensus 88 ~~~v~yQigaL~~~~~~~g~~l~hVKPHGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~~~ 150 (245)
T PRK12569 88 VNDVLYQLGALREFARAHGVRLQHVKPHGALYMHAARDEALARLLVEALARLDPLLILYCMDG 150 (245)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeEEecCCHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 344444566677789999988765532 245689999999999999999998665
No 154
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=20.60 E-value=1.3e+02 Score=32.11 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEeCCcccccc
Q 015548 121 DDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVR 184 (405)
Q Consensus 121 Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kgk~~~~r 184 (405)
..++.+.++.|+..++++||+=+.. |. ++..|.+.=| .|||+++++.+.+..+
T Consensus 359 ~~ia~~a~~~a~~~~akaIVv~T~S---------G~-TA~~vSr~rp-~~PIiAvT~~~~v~R~ 411 (473)
T TIGR01064 359 EAIALSAVEAAEKLDAKAIVVLTES---------GR-TARLLSKYRP-NAPIIAVTPNERVARQ 411 (473)
T ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC---------hH-HHHHHHhhCC-CCCEEEEcCCHHHHHH
Confidence 3567777889999999999986554 54 7788888876 5999999887655433
No 155
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=20.49 E-value=2.6e+02 Score=23.97 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEec----------------CCHHHHHHHHHHhCCCCEEEEccCCCC
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIES----------------DDVAKAIADEVASCNINKLVIGAQSQG 147 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle~----------------Gd~aeaIvd~A~e~~aDlIVmGs~g~s 147 (405)
+.+++.+.+.+++.|++++.+-+.+ .|-.+.|.+...+ +|.||+|+.-..
T Consensus 17 ~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~--aD~iI~~sP~y~ 82 (152)
T PF03358_consen 17 RKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKE--ADGIIFASPVYN 82 (152)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHH--SSEEEEEEEEBT
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceec--CCeEEEeecEEc
Confidence 3445555555666687777775543 2334455555554 799999998653
No 156
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=20.48 E-value=2e+02 Score=25.72 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEeCCccccccC
Q 015548 123 VAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVRP 185 (405)
Q Consensus 123 ~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kgk~~~~r~ 185 (405)
.+++|.++++++++++|++|....+. -+.+ .++.++ .++--..+.-+.. +....|+
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~g~---~la~-rlAa~L--~~~~vtdv~~l~~-~~~~~r~ 126 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSFGK---DLAP-RVAAKL--DVGLISDVTALED-DLTFTRP 126 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCcccc---chHH-HHHHHh--CCCceeeEEEEcc-CcEEEcc
Confidence 57788999999999999999998643 3333 355554 3343344555533 3444554
No 157
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=20.31 E-value=1.4e+02 Score=22.81 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHH
Q 015548 326 DVNFELEKLRIELRHVRGMYAIA 348 (405)
Q Consensus 326 ~~~~E~ekLrlELrh~~~my~~a 348 (405)
|++.|++||.-||..++......
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~ 23 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERL 23 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999988888877665544
No 158
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=20.17 E-value=1e+02 Score=33.04 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHhhhh
Q 015548 325 VDVNFELEKLRIELRHVRGMYAIAQNEA 352 (405)
Q Consensus 325 ~~~~~E~ekLrlELrh~~~my~~aq~E~ 352 (405)
+-++++||||+.+|.|...+|..-+-|.
T Consensus 425 ~~iq~qleKlk~Kl~~~k~L~~~~~L~r 452 (531)
T COG5259 425 VLIQAQLEKLKMKLGHLKELEKSTSLER 452 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999888663
No 159
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=20.03 E-value=6.6e+02 Score=26.49 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccC
Q 015548 95 TDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQ 144 (405)
Q Consensus 95 ~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~ 144 (405)
..+-|..+.+.+++.|+.... +..|++.+.|.+++++++|+.|..-..
T Consensus 49 l~~sL~~L~~~L~~~G~~L~v--~~~g~~~~~l~~l~~~~~i~~v~~~~~ 96 (475)
T TIGR02766 49 LKQSLAHLDQSLRSLGTCLVT--IRSTDTVAALLDCVRSTGATRLFFNHL 96 (475)
T ss_pred HHHHHHHHHHHHHHcCCceEE--EeCCCHHHHHHHHHHHcCCCEEEEecc
Confidence 344566666666667876543 335899999999999999999987555
No 160
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=20.00 E-value=2.4e+02 Score=27.66 Aligned_cols=67 Identities=9% Similarity=0.042 Sum_probs=43.3
Q ss_pred HhhhcCCcEEEEEEecCCHHHHH-HHHHHhCCCCEEEEccCCCC-CcccccccchhhHHHhhhCCCCceEEEEeCCcc
Q 015548 105 MCAQRRVEVEVKVIESDDVAKAI-ADEVASCNINKLVIGAQSQG-IFTWKFKKNNLSSRISICVPSFCTVYGVEKGKL 180 (405)
Q Consensus 105 ~~~~~gV~ve~vvle~Gd~aeaI-vd~A~e~~aDlIVmGs~g~s-~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kgk~ 180 (405)
.|.+.|+..+.++..-|.-...+ .++.++++||.||.=.+|.. ++..++. .|. ... ++|++|.+..+
T Consensus 166 ~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~---AA~----~lg--i~vivI~RP~~ 234 (256)
T TIGR00715 166 QALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVK---AAE----ALG--INVIRIARPQT 234 (256)
T ss_pred HHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHH---HHH----HcC--CcEEEEeCCCC
Confidence 45555666555544435444444 46789999999999999875 6666653 222 222 88999977654
Done!