Query 015548
Match_columns 405
No_of_seqs 165 out of 1223
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 14:32:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mjh_A Protein (ATP-binding do 99.9 1.1E-22 3.8E-27 178.1 18.4 149 13-179 4-161 (162)
2 3s3t_A Nucleotide-binding prot 99.9 1.1E-22 3.7E-27 174.7 17.3 142 12-176 3-146 (146)
3 3fg9_A Protein of universal st 99.9 5.1E-22 1.7E-26 173.2 16.1 142 10-176 11-156 (156)
4 3idf_A USP-like protein; unive 99.9 8.3E-22 2.8E-26 167.9 15.9 136 14-176 1-138 (138)
5 3hgm_A Universal stress protei 99.9 8.1E-23 2.8E-27 175.4 8.4 143 14-175 2-147 (147)
6 2gm3_A Unknown protein; AT3G01 99.9 1.5E-21 5E-26 173.7 16.1 152 12-179 3-165 (175)
7 2dum_A Hypothetical protein PH 99.9 1.6E-21 5.6E-26 172.3 16.1 149 13-179 4-158 (170)
8 1tq8_A Hypothetical protein RV 99.9 8.5E-22 2.9E-26 175.0 13.9 145 9-178 12-159 (163)
9 3dlo_A Universal stress protei 99.9 6.4E-21 2.2E-25 168.0 16.0 134 10-176 20-155 (155)
10 3tnj_A Universal stress protei 99.9 4.4E-21 1.5E-25 165.6 14.0 145 11-178 3-148 (150)
11 2z08_A Universal stress protei 99.9 4.6E-21 1.6E-25 163.6 13.3 135 14-176 2-137 (137)
12 3fdx_A Putative filament prote 99.8 1.6E-20 5.3E-25 160.6 11.4 138 14-176 1-143 (143)
13 1jmv_A USPA, universal stress 99.8 2.1E-19 7.2E-24 153.5 9.5 137 14-179 2-140 (141)
14 3olq_A Universal stress protei 99.8 9.1E-19 3.1E-23 169.1 14.7 148 12-179 5-152 (319)
15 3ab8_A Putative uncharacterize 99.8 1.1E-18 3.8E-23 164.7 12.2 149 15-178 1-150 (268)
16 3cis_A Uncharacterized protein 99.8 1E-17 3.5E-22 161.9 16.2 143 11-179 16-163 (309)
17 3mt0_A Uncharacterized protein 99.7 5.8E-18 2E-22 162.2 13.2 138 13-179 133-278 (290)
18 3loq_A Universal stress protei 99.7 2.3E-18 7.9E-23 165.1 10.4 146 10-179 18-164 (294)
19 1q77_A Hypothetical protein AQ 99.7 1.7E-17 5.8E-22 141.3 13.1 131 13-176 3-138 (138)
20 3olq_A Universal stress protei 99.7 1.4E-17 4.9E-22 160.6 13.0 145 12-180 154-308 (319)
21 3cis_A Uncharacterized protein 99.7 6.7E-17 2.3E-21 156.2 16.4 136 12-177 169-306 (309)
22 3loq_A Universal stress protei 99.7 9E-17 3.1E-21 154.0 14.7 124 12-178 168-291 (294)
23 3mt0_A Uncharacterized protein 99.7 2.7E-17 9.1E-22 157.6 10.9 125 12-178 5-129 (290)
24 3ab8_A Putative uncharacterize 99.6 4E-15 1.4E-19 140.2 12.6 116 13-176 153-268 (268)
25 3a2k_A TRNA(Ile)-lysidine synt 92.3 0.81 2.8E-05 46.8 11.4 99 12-146 16-130 (464)
26 1wy5_A TILS, hypothetical UPF0 91.0 2.8 9.6E-05 40.3 13.0 97 12-145 22-135 (317)
27 2iel_A Hypothetical protein TT 83.4 6.7 0.00023 33.8 9.2 80 91-176 52-134 (138)
28 1zun_A Sulfate adenylyltransfe 79.6 9.6 0.00033 37.0 10.2 39 14-53 46-84 (325)
29 1ni5_A Putative cell cycle pro 78.9 3.4 0.00012 41.8 6.9 41 13-54 12-53 (433)
30 1k92_A Argininosuccinate synth 77.7 5.2 0.00018 41.0 7.8 38 12-54 8-45 (455)
31 2bzb_A Conserved domain protei 73.0 2.1 7.2E-05 32.0 2.6 36 324-359 3-38 (62)
32 1sur_A PAPS reductase; assimil 71.8 34 0.0012 30.3 11.1 35 15-54 45-79 (215)
33 3bl5_A Queuosine biosynthesis 68.1 47 0.0016 29.1 11.0 36 14-54 3-38 (219)
34 4grd_A N5-CAIR mutase, phospho 66.6 15 0.00052 32.8 7.2 67 100-177 29-98 (173)
35 2c0s_A Conserved domain protei 65.6 2.9 0.0001 31.4 2.0 36 324-359 3-38 (64)
36 2xry_A Deoxyribodipyrimidine p 63.9 29 0.001 35.2 9.9 113 28-180 52-164 (482)
37 4b4k_A N5-carboxyaminoimidazol 62.7 24 0.00082 31.7 7.7 68 99-177 38-108 (181)
38 2ywx_A Phosphoribosylaminoimid 62.3 23 0.00079 31.1 7.5 66 101-177 17-82 (157)
39 2c5s_A THII, probable thiamine 62.1 46 0.0016 33.2 10.7 40 9-53 182-221 (413)
40 1kor_A Argininosuccinate synth 61.6 28 0.00095 34.8 9.0 36 15-54 1-36 (400)
41 2nz2_A Argininosuccinate synth 60.8 18 0.00063 36.3 7.5 36 14-54 5-40 (413)
42 2pg3_A Queuosine biosynthesis 60.2 83 0.0028 28.1 11.3 34 15-53 3-36 (232)
43 3kuu_A Phosphoribosylaminoimid 59.8 24 0.0008 31.6 7.1 67 100-177 29-98 (174)
44 1xmp_A PURE, phosphoribosylami 59.6 27 0.00092 31.1 7.5 66 101-177 29-97 (170)
45 3oow_A Phosphoribosylaminoimid 58.6 28 0.00096 30.9 7.4 67 100-177 22-91 (166)
46 3trh_A Phosphoribosylaminoimid 58.1 21 0.00073 31.7 6.5 67 100-177 23-92 (169)
47 2wsi_A FAD synthetase; transfe 57.5 57 0.0019 31.1 10.1 99 15-151 54-173 (306)
48 1u11_A PURE (N5-carboxyaminoim 56.8 28 0.00094 31.4 7.1 67 100-177 38-107 (182)
49 3ors_A N5-carboxyaminoimidazol 56.5 29 0.001 30.6 7.1 67 100-177 20-89 (163)
50 2oq2_A Phosphoadenosine phosph 56.0 64 0.0022 29.8 10.0 37 14-52 41-77 (261)
51 2hma_A Probable tRNA (5-methyl 54.5 38 0.0013 33.4 8.5 37 13-54 8-44 (376)
52 3umv_A Deoxyribodipyrimidine p 53.9 38 0.0013 34.9 8.7 83 28-141 53-135 (506)
53 1o4v_A Phosphoribosylaminoimid 53.0 33 0.0011 30.9 7.0 67 100-177 30-99 (183)
54 2ywb_A GMP synthase [glutamine 52.5 69 0.0023 32.7 10.3 35 15-54 210-244 (503)
55 1vbk_A Hypothetical protein PH 52.3 69 0.0023 30.6 9.7 40 7-52 172-211 (307)
56 3lp6_A Phosphoribosylaminoimid 52.0 29 0.00099 31.0 6.4 67 100-177 24-93 (174)
57 3rg8_A Phosphoribosylaminoimid 50.0 34 0.0012 30.1 6.5 67 100-177 19-89 (159)
58 1efv_B Electron transfer flavo 49.3 25 0.00086 33.0 5.9 62 123-187 104-167 (255)
59 1efp_B ETF, protein (electron 48.3 24 0.00083 32.9 5.6 62 123-187 101-164 (252)
60 2l69_A Rossmann 2X3 fold prote 47.7 13 0.00045 30.2 3.1 48 97-145 13-60 (134)
61 2dpl_A GMP synthetase, GMP syn 47.7 92 0.0032 29.6 9.8 36 15-54 21-56 (308)
62 1iv0_A Hypothetical protein; r 46.6 29 0.00099 27.8 5.1 50 122-176 38-92 (98)
63 1o97_C Electron transferring f 46.1 9.5 0.00033 36.0 2.4 39 123-162 100-138 (264)
64 3k32_A Uncharacterized protein 41.6 68 0.0023 28.4 7.3 37 13-54 5-41 (203)
65 3tqi_A GMP synthase [glutamine 38.1 70 0.0024 32.9 7.7 35 15-53 231-265 (527)
66 2wq7_A RE11660P; lyase-DNA com 37.9 1E+02 0.0034 31.9 8.9 131 16-180 30-164 (543)
67 3g40_A Na-K-CL cotransporter; 37.6 64 0.0022 31.1 6.8 96 15-147 21-121 (294)
68 2o8v_A Phosphoadenosine phosph 37.3 2.1E+02 0.007 26.1 10.2 33 15-52 46-78 (252)
69 1ccw_A Protein (glutamate muta 37.1 99 0.0034 25.6 7.3 40 105-146 26-65 (137)
70 2der_A TRNA-specific 2-thiouri 36.9 1.2E+02 0.0042 29.7 9.0 39 10-53 13-51 (380)
71 2qv7_A Diacylglycerol kinase D 34.2 1.2E+02 0.0041 28.8 8.3 73 99-179 44-116 (337)
72 1np7_A DNA photolyase; protein 33.4 1.5E+02 0.005 30.0 9.2 78 96-181 64-141 (489)
73 2yxb_A Coenzyme B12-dependent 32.7 80 0.0027 27.1 6.1 40 105-146 41-80 (161)
74 3fy4_A 6-4 photolyase; DNA rep 32.3 69 0.0024 33.2 6.6 45 96-143 67-111 (537)
75 2j4d_A Cryptochrome 3, cryptoc 32.2 1.6E+02 0.0054 30.2 9.3 77 96-178 99-175 (525)
76 2amj_A Modulator of drug activ 31.9 75 0.0026 28.1 6.0 50 96-147 33-82 (204)
77 1gpm_A GMP synthetase, XMP ami 31.8 1.6E+02 0.0055 30.1 9.2 36 15-54 228-263 (525)
78 1vl2_A Argininosuccinate synth 30.8 1.8E+02 0.0062 29.2 9.2 35 13-52 13-47 (421)
79 3s40_A Diacylglycerol kinase; 30.5 1.6E+02 0.0053 27.6 8.3 70 101-179 30-99 (304)
80 2i2x_B MTAC, methyltransferase 30.4 1.2E+02 0.0043 27.8 7.4 65 105-175 146-210 (258)
81 1vhx_A Putative holliday junct 30.0 22 0.00077 30.5 2.0 53 121-177 41-98 (150)
82 1wmi_B RELB, hypothetical prot 29.5 37 0.0013 25.1 2.8 20 327-346 9-28 (67)
83 4dad_A Putative pilus assembly 28.8 1.6E+02 0.0055 23.0 7.1 52 121-178 52-104 (146)
84 3twe_A Alpha4H; unknown functi 28.4 39 0.0013 20.4 2.2 19 324-342 3-21 (27)
85 3ih5_A Electron transfer flavo 27.7 21 0.00073 32.5 1.5 125 14-188 3-151 (217)
86 3tvs_A Cryptochrome-1; circadi 26.9 1.1E+02 0.0037 31.7 6.9 50 96-149 60-112 (538)
87 2h31_A Multifunctional protein 26.7 1E+02 0.0034 31.3 6.4 68 99-177 281-352 (425)
88 3vem_A Helicase protein MOM1; 25.1 45 0.0015 27.8 2.8 29 318-346 28-56 (115)
89 3bvp_A INT, TP901-1 integrase; 24.3 1.4E+02 0.0047 24.4 5.9 45 101-145 29-81 (138)
90 3fni_A Putative diflavin flavo 23.4 1.4E+02 0.0047 25.1 5.9 40 106-148 29-69 (159)
91 1nu0_A Hypothetical protein YQ 23.1 54 0.0018 27.8 3.1 23 122-144 40-62 (138)
92 1i4n_A Indole-3-glycerol phosp 22.8 4E+02 0.014 24.6 9.4 76 97-182 137-213 (251)
93 3kcq_A Phosphoribosylglycinami 22.8 4.2E+02 0.014 23.8 9.4 87 12-145 6-92 (215)
94 2bon_A Lipid kinase; DAG kinas 22.5 1.8E+02 0.0061 27.6 7.1 71 103-180 50-121 (332)
95 2j07_A Deoxyribodipyrimidine p 21.5 1.8E+02 0.0063 28.7 7.2 75 96-181 51-125 (420)
96 2yy0_A C-MYC-binding protein; 21.4 69 0.0023 22.9 2.9 30 330-359 20-49 (53)
97 1vb5_A Translation initiation 21.2 1.9E+02 0.0066 27.0 6.9 60 109-179 159-221 (276)
98 3hly_A Flavodoxin-like domain; 21.1 1.9E+02 0.0065 24.1 6.3 40 106-148 25-64 (161)
99 3rjz_A N-type ATP pyrophosphat 20.9 2.1E+02 0.0071 26.4 6.9 95 15-146 5-101 (237)
100 3n0v_A Formyltetrahydrofolate 20.5 5.3E+02 0.018 24.2 9.9 87 11-145 87-176 (286)
101 1y80_A Predicted cobalamin bin 20.3 1.7E+02 0.0058 25.7 6.0 39 105-145 111-149 (210)
102 1v6t_A Hypothetical UPF0271 pr 20.0 1.2E+02 0.0041 28.6 5.1 51 95-145 87-146 (255)
No 1
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.90 E-value=1.1e-22 Score=178.15 Aligned_cols=149 Identities=7% Similarity=0.006 Sum_probs=119.0
Q ss_pred CCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCC-----CCCCCCCccccCCCCC-Cc--c-cccccchHH
Q 015548 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRI-----TSVPTPTSLAIGHPVG-NF--I-PIEQVRDDV 83 (405)
Q Consensus 13 ~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~-----~~~ptp~~~~~~~~~G-~~--v-p~s~~~~d~ 83 (405)
.+++||||+|+|+.+..|++||++++...+. ++++|||.++. .... .+ .. + |. ..+.
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a-~l~ll~v~~~~~~~~~~~~~----------~~~~~~~~~~~---~~~~ 69 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAE-EVILLHVIDEREIKKRDIFS----------LLLGVAGLNKS---VEEF 69 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCC-EEEEEEEEEGGGTC------------------------------CHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCC-eEEEEEEecCcccccccccc----------ccccccccccc---hhhh
Confidence 5799999999999999999999998876666 59999999864 1100 11 00 1 11 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHh
Q 015548 84 AAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRIS 163 (405)
Q Consensus 84 ~~~~~~e~~~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vv 163 (405)
.+.+.++.++..++.|+.+.+.+...|++++..+.. |+++++|+++|+++++|+||||++|++++.++++|| ++.+|+
T Consensus 70 ~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~-G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GS-v~~~vl 147 (162)
T 1mjh_A 70 ENELKNKLTEEAKNKMENIKKELEDVGFKVKDIIVV-GIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGS-VTENVI 147 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEcC-CCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecc-hHHHHH
Confidence 234555666778888999998898899999888766 899999999999999999999999999999999997 999999
Q ss_pred hhCCCCceEEEEeCCc
Q 015548 164 ICVPSFCTVYGVEKGK 179 (405)
Q Consensus 164 k~ap~~C~VlVV~kgk 179 (405)
++++ |||+||+.+.
T Consensus 148 ~~~~--~pVlvv~~~~ 161 (162)
T 1mjh_A 148 KKSN--KPVLVVKRKN 161 (162)
T ss_dssp HHCC--SCEEEECCCC
T ss_pred HhCC--CCEEEEeCCC
Confidence 9998 9999997653
No 2
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.90 E-value=1.1e-22 Score=174.67 Aligned_cols=142 Identities=14% Similarity=0.083 Sum_probs=119.8
Q ss_pred CCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHH
Q 015548 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (405)
Q Consensus 12 ~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~ 91 (405)
..+++||||+|+|+.+..|++||++++...+. ++++|||.++....+ .+. ......+.++.
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a-~l~ll~v~~~~~~~~----------~~~--------~~~~~~~~~~~ 63 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQA-NLTALYVVDDSAYHT----------PAL--------DPVLSELLDAE 63 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHHTC-EEEEEEEEECCCCCC----------GGG--------HHHHHHHHHHH
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHHHHhcCC-EEEEEEEecCccccc----------ccc--------ccccHHHHHHH
Confidence 46899999999999999999999999977666 599999998853211 000 00223455566
Q ss_pred HHHHHHHHHHHHHHhhhcCC-cEEEEEEecCCHHHHHHH-HHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCC
Q 015548 92 KWKTDRLLLPFRNMCAQRRV-EVEVKVIESDDVAKAIAD-EVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSF 169 (405)
Q Consensus 92 ~~~~~~~L~~~~~~~~~~gV-~ve~vvle~Gd~aeaIvd-~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~ 169 (405)
++..++.|+.+.+.+...|+ +++..+.. |++++.|++ +|++.++|+||||++|++++.++++|| ++.+|+++++
T Consensus 64 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~-g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs-~~~~vl~~~~-- 139 (146)
T 3s3t_A 64 AAHAKDAMRQRQQFVATTSAPNLKTEISY-GIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGS-TTSYVVDHAP-- 139 (146)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCCEEEEEE-ECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCH-HHHHHHHHCS--
T ss_pred HHHHHHHHHHHHHHHHhcCCcceEEEEec-CChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcc-hHHHHhccCC--
Confidence 77888899999999988899 88888776 899999999 999999999999999999999999998 9999999998
Q ss_pred ceEEEEe
Q 015548 170 CTVYGVE 176 (405)
Q Consensus 170 C~VlVV~ 176 (405)
|||+||+
T Consensus 140 ~pVlvV~ 146 (146)
T 3s3t_A 140 CNVIVIR 146 (146)
T ss_dssp SEEEEEC
T ss_pred CCEEEeC
Confidence 9999985
No 3
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.88 E-value=5.1e-22 Score=173.19 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=116.0
Q ss_pred CCCCCCeEEEeec--CCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHH
Q 015548 10 PNSPALSVAVAVK--GNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAY 87 (405)
Q Consensus 10 ~~~~~~kILVAVD--gS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~ 87 (405)
....+++||||+| +|+.+..|++||++++...++. +++|||.++..... .+. ..+ .+
T Consensus 11 ~~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~-l~ll~v~~~~~~~~----------~~~------~~~----~~ 69 (156)
T 3fg9_A 11 EPLVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVP-LGICSVLESEDINI----------FDS------LTP----SK 69 (156)
T ss_dssp SCCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCC-EEEEEEECCCCTTC----------CCS------SHH----HH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCE-EEEEEEEeCCCccc----------ccc------CCH----HH
Confidence 4567899999999 9999999999999998777665 99999998753211 111 111 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCc-EEEEEEecCCHHHHHHHH-HHhCCCCEEEEccCCCCCcccccccchhhHHHhhh
Q 015548 88 KQEEKWKTDRLLLPFRNMCAQRRVE-VEVKVIESDDVAKAIADE-VASCNINKLVIGAQSQGIFTWKFKKNNLSSRISIC 165 (405)
Q Consensus 88 ~~e~~~~~~~~L~~~~~~~~~~gV~-ve~vvle~Gd~aeaIvd~-A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ 165 (405)
.++.++..++.|+.+.+.+...|++ ++..+..+|+++++|+++ |+++++|+||||++|++++.+ ++|| ++.+|+++
T Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~~-~~Gs-~~~~vl~~ 147 (156)
T 3fg9_A 70 IQAKRKHVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHSK-IAGA-IGPRLARK 147 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTSS-SCSC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccce-eecc-hHHHHHHh
Confidence 4455667788888888888888994 887776669999999999 999999999999999999974 8998 99999999
Q ss_pred CCCCceEEEEe
Q 015548 166 VPSFCTVYGVE 176 (405)
Q Consensus 166 ap~~C~VlVV~ 176 (405)
++ |||+||+
T Consensus 148 a~--~PVlvV~ 156 (156)
T 3fg9_A 148 AP--ISVIVVR 156 (156)
T ss_dssp CS--SEEEEEC
T ss_pred CC--CCEEEeC
Confidence 98 9999985
No 4
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.88 E-value=8.3e-22 Score=167.90 Aligned_cols=136 Identities=18% Similarity=0.230 Sum_probs=113.0
Q ss_pred CCeEEEeecCCHHHHHHHHHHHHHh-ccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHH
Q 015548 14 ALSVAVAVKGNRKSRYAVLWALEKF-IPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK 92 (405)
Q Consensus 14 ~~kILVAVDgS~~S~~AL~wAl~~a-~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~ 92 (405)
+++||||+|+|+.+..|++||++++ ...+. ++++|||.++.... +.. ......+.++.+
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a-~l~ll~v~~~~~~~------------~~~-------~~~~~~~~~~~~ 60 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADC-TLTLIHVKPEFMLY------------GEA-------VLAAYDEIEMKE 60 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTE-EEEEEEEECCCCCC------------HHH-------HHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCC-EEEEEEEecCCCcc------------ccc-------ccCcHHHHHHHH
Confidence 4799999999999999999999999 76665 59999999875311 000 001122344555
Q ss_pred -HHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCce
Q 015548 93 -WKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCT 171 (405)
Q Consensus 93 -~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~ 171 (405)
+..++.|+.+.+.+...|++++..+.. |++++.|+++++ ++|+||||++|++++.+++ || ++.+|+++++ ||
T Consensus 61 ~~~~~~~l~~~~~~~~~~g~~~~~~v~~-g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs-~~~~vl~~~~--~p 133 (138)
T 3idf_A 61 EEKAKLLTQKFSTFFTEKGINPFVVIKE-GEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-AS-HQDDFIQKAP--IP 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCEEEEEE-SCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CC-TTCHHHHHCS--SC
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEEec-CChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-Cc-HHHHHHhcCC--CC
Confidence 777889999999998899999888776 899999999999 9999999999999999999 98 9999999998 99
Q ss_pred EEEEe
Q 015548 172 VYGVE 176 (405)
Q Consensus 172 VlVV~ 176 (405)
|+||+
T Consensus 134 Vlvv~ 138 (138)
T 3idf_A 134 VLIVK 138 (138)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 5
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.87 E-value=8.1e-23 Score=175.36 Aligned_cols=143 Identities=15% Similarity=0.086 Sum_probs=113.3
Q ss_pred CCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHH
Q 015548 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKW 93 (405)
Q Consensus 14 ~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~ 93 (405)
+++||||+|+|+.+..|++||++++...++ ++++|||.++....... .+ ..+... .+.+.+..++
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a-~l~ll~v~~~~~~~~~~--------~~-~~~~~~-----~~~~~~~~~~ 66 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGA-ELYILCVFKHHSLLEAS--------LS-MARPEQ-----LDIPDDALKD 66 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCC-EEEEEEEECCHHHHHHT--------BS-SCCCGG-----GCCCTTHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCC-EEEEEEEecCccccccc--------cc-ccChhh-----hhhHHHHHHH
Confidence 689999999999999999999999877766 59999999874210000 00 001100 0011223456
Q ss_pred HHHHHHHHHHHHhhhcCCcE---EEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCc
Q 015548 94 KTDRLLLPFRNMCAQRRVEV---EVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFC 170 (405)
Q Consensus 94 ~~~~~L~~~~~~~~~~gV~v---e~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C 170 (405)
..++.++.+.+.+...|+++ +..+.. |++++.|+++|+++++|+||||++|++++.++++|| ++.+|+++++ |
T Consensus 67 ~~~~~l~~~~~~~~~~g~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs-~~~~vl~~~~--~ 142 (147)
T 3hgm_A 67 YATEIAVQAKTRATELGVPADKVRAFVKG-GRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGS-VAQRVAGSAH--C 142 (147)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEEE-SCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCH-HHHHHHHHCS--S
T ss_pred HHHHHHHHHHHHHHhcCCCccceEEEEec-CCHHHHHHHHHHHhCCCEEEEeCCCCccccceeecc-HHHHHHhhCC--C
Confidence 67788888888898889888 877666 899999999999999999999999999999999998 9999999998 9
Q ss_pred eEEEE
Q 015548 171 TVYGV 175 (405)
Q Consensus 171 ~VlVV 175 (405)
||+||
T Consensus 143 pVlvV 147 (147)
T 3hgm_A 143 PVLVV 147 (147)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 99986
No 6
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.87 E-value=1.5e-21 Score=173.65 Aligned_cols=152 Identities=25% Similarity=0.270 Sum_probs=106.9
Q ss_pred CCCCeEEEeecCCH---------HHHHHHHHHHHHhccC--CCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccc
Q 015548 12 SPALSVAVAVKGNR---------KSRYAVLWALEKFIPE--GINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVR 80 (405)
Q Consensus 12 ~~~~kILVAVDgS~---------~S~~AL~wAl~~a~~~--g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~ 80 (405)
..+++||||+|+++ .+..|++||++++... .+.+|++|||.++..... . . .+... ..
T Consensus 3 ~~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~-~---~----~~~~~----~~ 70 (175)
T 2gm3_A 3 SEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGF-D---D----VDSIY----AS 70 (175)
T ss_dssp --CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC------------------CCC----CS
T ss_pred CCccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccc-c---c----ccccc----CC
Confidence 35789999999999 9999999999987543 234699999986532100 0 0 00000 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhH
Q 015548 81 DDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSS 160 (405)
Q Consensus 81 ~d~~~~~~~e~~~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~ 160 (405)
++..+.+.++.++..++.|+.+.+.+...|++++..+.. |++++.|+++|+++++|+||||++|++++.++++|| ++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~-G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gs-va~ 148 (175)
T 2gm3_A 71 PEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKT-GDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGT-VSA 148 (175)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHHHHHTCEEEEEEEE-SCHHHHHHHHHHHHCCSEEEEEECCCC--------C-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEEec-CCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCc-hHH
Confidence 222333334445566778888888888889999887776 899999999999999999999999999999999998 999
Q ss_pred HHhhhCCCCceEEEEeCCc
Q 015548 161 RISICVPSFCTVYGVEKGK 179 (405)
Q Consensus 161 ~Vvk~ap~~C~VlVV~kgk 179 (405)
+|+++++ |||+||+.+.
T Consensus 149 ~vl~~a~--~pVlvv~~~~ 165 (175)
T 2gm3_A 149 FCVKHAE--CPVMTIKRNA 165 (175)
T ss_dssp HHHHHCS--SCEEEEECCG
T ss_pred HHHhCCC--CCEEEEcCCc
Confidence 9999998 9999998754
No 7
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.87 E-value=1.6e-21 Score=172.29 Aligned_cols=149 Identities=13% Similarity=-0.046 Sum_probs=112.9
Q ss_pred CCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccc----cccchHHHHHHH
Q 015548 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPI----EQVRDDVAAAYK 88 (405)
Q Consensus 13 ~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~----s~~~~d~~~~~~ 88 (405)
.+++||||+|+++.+..|++||++++...++ +|++|||.++..... .+..++. ..... +.+.
T Consensus 4 m~~~ILv~vD~s~~s~~al~~A~~la~~~~a-~l~ll~v~~~~~~~~----------~~~~~~~~~~~~~~~~---~~~~ 69 (170)
T 2dum_A 4 MFRKVLFPTDFSEGAYRAVEVFEKRNKMEVG-EVILLHVIDEGTLEE----------LMDGYSFFYDNAEIEL---KDIK 69 (170)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHCCSCCS-EEEEEEEEETTGGGC----------CC------------CC---TTSH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHHHHhcCC-EEEEEEEecCccccc----------cccccccccccccccH---HHHH
Confidence 5799999999999999999999998877665 599999998642100 0000000 00000 0122
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcEEE--EEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhC
Q 015548 89 QEEKWKTDRLLLPFRNMCAQRRVEVEV--KVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICV 166 (405)
Q Consensus 89 ~e~~~~~~~~L~~~~~~~~~~gV~ve~--vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~a 166 (405)
++.++..++.|+.+.+.+...|++++. .+.. |++++.|+++|+++++|+||||++|++++.++++|| ++.+|++++
T Consensus 70 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~-g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gs-v~~~vl~~~ 147 (170)
T 2dum_A 70 EKLKEEASRKLQEKAEEVKRAFRAKNVRTIIRF-GIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGS-TVMRVLRKT 147 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEE-ECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCH-HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeeeeEEec-CChHHHHHHHHHHcCCCEEEECCCCCCccccceech-HHHHHHHhC
Confidence 334556677888888888778998887 6665 899999999999999999999999999999999997 999999999
Q ss_pred CCCceEEEEeCCc
Q 015548 167 PSFCTVYGVEKGK 179 (405)
Q Consensus 167 p~~C~VlVV~kgk 179 (405)
+ |||+||+.+.
T Consensus 148 ~--~PVlvv~~~~ 158 (170)
T 2dum_A 148 K--KPVLIIKEVD 158 (170)
T ss_dssp S--SCEEEECCCC
T ss_pred C--CCEEEEccCC
Confidence 8 9999998654
No 8
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.87 E-value=8.5e-22 Score=174.97 Aligned_cols=145 Identities=14% Similarity=0.100 Sum_probs=111.3
Q ss_pred CCCCCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEE--EEecCCCCCCCCCccccCCCCCCcccccccchHHHHH
Q 015548 9 LPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLL--HVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAA 86 (405)
Q Consensus 9 ~~~~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LL--HV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~ 86 (405)
.....+++||||+|+|+.+..|++||++++. .+. +++|| ||.++..... +...+ ...
T Consensus 12 ~~~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a-~l~ll~a~v~~~~~~~~-----------~~~~~--------~~~ 70 (163)
T 1tq8_A 12 MSLSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADA-KLIIASAYLPQHEDARA-----------ADILK--------DES 70 (163)
T ss_dssp -CCCCCCEEEEECCSSHHHHHHHHHHHHHHT-TTS-EEEEEEECCC----------------------------------
T ss_pred cccccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCC-EEEEEEeeeccCccccc-----------ccccc--------cHH
Confidence 3556789999999999999999999999998 665 59999 8876542100 00000 011
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCc-EEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhh
Q 015548 87 YKQEEKWKTDRLLLPFRNMCAQRRVE-VEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISIC 165 (405)
Q Consensus 87 ~~~e~~~~~~~~L~~~~~~~~~~gV~-ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ 165 (405)
+.++.++..++.|+.+.+.+...|++ ++..+.. |+|+++|+++|++.++|+||||++|++++.++++|| ++.+|+++
T Consensus 71 ~~~~~~~~~~~~l~~~~~~~~~~gv~~v~~~v~~-G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGS-va~~vl~~ 148 (163)
T 1tq8_A 71 YKVTGTAPIYEILHDAKERAHNAGAKNVEERPIV-GAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGS-VPANVSRR 148 (163)
T ss_dssp -----CCTHHHHHHHHHHHHHTTTCCEEEEEEEC-SSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBB-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEec-CCHHHHHHHHHHhcCCCEEEECCCCCCcccceeecc-HHHHHHHh
Confidence 22233455677888888888888998 8888766 899999999999999999999999999999999998 99999999
Q ss_pred CCCCceEEEEeCC
Q 015548 166 VPSFCTVYGVEKG 178 (405)
Q Consensus 166 ap~~C~VlVV~kg 178 (405)
++ |||+||+..
T Consensus 149 a~--~PVlvV~~~ 159 (163)
T 1tq8_A 149 AK--VDVLIVHTT 159 (163)
T ss_dssp TT--CEEEEECCC
T ss_pred CC--CCEEEEeCC
Confidence 98 999999754
No 9
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.86 E-value=6.4e-21 Score=167.96 Aligned_cols=134 Identities=13% Similarity=0.137 Sum_probs=111.3
Q ss_pred CCCCCCeEEEeecC-CHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHH
Q 015548 10 PNSPALSVAVAVKG-NRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYK 88 (405)
Q Consensus 10 ~~~~~~kILVAVDg-S~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~ 88 (405)
....+++||||+|+ ++.+..|++||++++...++. +++|||.++.. + . .
T Consensus 20 ~~mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~-l~llhV~~~~~----~--------------~---~-------- 69 (155)
T 3dlo_A 20 QGMIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVP-VYVVHSLPGGG----R--------------T---K-------- 69 (155)
T ss_dssp --CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCC-EEEEEEECCST----T--------------S---C--------
T ss_pred cccccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCE-EEEEEEEcCCC----c--------------c---c--------
Confidence 34568999999999 999999999999999877675 99999998631 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcEEEEE-EecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCC
Q 015548 89 QEEKWKTDRLLLPFRNMCAQRRVEVEVKV-IESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVP 167 (405)
Q Consensus 89 ~e~~~~~~~~L~~~~~~~~~~gV~ve~vv-le~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap 167 (405)
+...+..++.|+.+.+.+.+.|+.++..+ +..|+|+++|+++|+++++|+||||++|++++.++++|| ++.+|+++++
T Consensus 70 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGS-v~~~vl~~a~ 148 (155)
T 3dlo_A 70 DEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGS-VARDVILKAN 148 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCH-HHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEecc-HHHHHHHhCC
Confidence 12234566778888888888888877643 456999999999999999999999999999999999997 9999999998
Q ss_pred CCceEEEEe
Q 015548 168 SFCTVYGVE 176 (405)
Q Consensus 168 ~~C~VlVV~ 176 (405)
|||+||+
T Consensus 149 --~PVLvVr 155 (155)
T 3dlo_A 149 --KPVICIK 155 (155)
T ss_dssp --SCEEEEC
T ss_pred --CCEEEeC
Confidence 9999984
No 10
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.86 E-value=4.4e-21 Score=165.64 Aligned_cols=145 Identities=14% Similarity=0.130 Sum_probs=97.2
Q ss_pred CCCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHH
Q 015548 11 NSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQE 90 (405)
Q Consensus 11 ~~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e 90 (405)
++.+++||||+|+|+.+..|++||++++...++ ++++|||.++..... + . .+...|... + .+.++
T Consensus 3 m~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a-~l~ll~v~~~~~~~~-~---~----~~~~~~~~~--~----~~~~~ 67 (150)
T 3tnj_A 3 MSVYHHILLAVDFSSEDSQVVQKVRNLASQIGA-RLSLIHVLDNIPMPD-T---P----YGTAIPLDT--E----TTYDA 67 (150)
T ss_dssp -CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTC-EEEEEEEEC----------------CTTCCCSSS--C----CCHHH
T ss_pred CCccceEEEEeCCCHHHHHHHHHHHHHHhhcCC-EEEEEEEEcCccccc-c---c----cccccCcCH--H----HHHHH
Confidence 457899999999999999999999999977666 599999998753210 0 0 111112110 0 11223
Q ss_pred HHHHHHHHHHHHHHHhhhcCCc-EEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCC
Q 015548 91 EKWKTDRLLLPFRNMCAQRRVE-VEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSF 169 (405)
Q Consensus 91 ~~~~~~~~L~~~~~~~~~~gV~-ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~ 169 (405)
.++.+++.|+.+.+ +.|+. ++..+.. |+++++|+++|+++++|+||||++|++++. +++|| ++.+|+++++
T Consensus 68 ~~~~~~~~l~~~~~---~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs-~~~~vl~~~~-- 139 (150)
T 3tnj_A 68 MLDVEKQKLSQIGN---TLGIDPAHRWLVW-GEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGS-TANSVLHYAK-- 139 (150)
T ss_dssp HHHHHHHHHHHHHH---HHTCCGGGEEEEE-SCHHHHHHHHHHHTTCSEEEEEEC---------CCC-HHHHHHHHCS--
T ss_pred HHHHHHHHHHHHHH---HcCCCcceEEEec-CCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecc-hHHHHHHhCC--
Confidence 33445555555433 33666 3455455 999999999999999999999999999999 99998 9999999998
Q ss_pred ceEEEEeCC
Q 015548 170 CTVYGVEKG 178 (405)
Q Consensus 170 C~VlVV~kg 178 (405)
|||+||+..
T Consensus 140 ~pVlvv~~~ 148 (150)
T 3tnj_A 140 CDVLAVRLR 148 (150)
T ss_dssp SEEEEEECC
T ss_pred CCEEEEeCC
Confidence 999999864
No 11
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.85 E-value=4.6e-21 Score=163.61 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=103.6
Q ss_pred CCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHH
Q 015548 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKW 93 (405)
Q Consensus 14 ~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~ 93 (405)
+++||||+|+++.+..|++||++++...+. ++++|||.++... . .+...| + .+.++.++
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a-~l~ll~v~~~~~~-~----------~~~~~~-----~----~~~~~~~~ 60 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGA-RLIVVHAYEPVPD-Y----------LGEPFF-----E----EALRRRLE 60 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTC-EEEEEEEECC----------------------------------CHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCC-EEEEEEEecCCCc-c----------ccccch-----H----HHHHHHHH
Confidence 689999999999999999999999876666 5999999975321 0 110000 0 12223344
Q ss_pred HHHHHHHHHHHHhhhcCC-cEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceE
Q 015548 94 KTDRLLLPFRNMCAQRRV-EVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTV 172 (405)
Q Consensus 94 ~~~~~L~~~~~~~~~~gV-~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~V 172 (405)
..++.|+.+.+. .|+ +++..+.. |+++++|+++|+++++|+||||++|++++.+.++|| ++.+|+++++ |||
T Consensus 61 ~~~~~l~~~~~~---~g~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs-~~~~vl~~~~--~pV 133 (137)
T 2z08_A 61 RAEGVLEEARAL---TGVPKEDALLLE-GVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGS-QSQRVVAEAP--CPV 133 (137)
T ss_dssp HHHHHHHHHHHH---HCCCGGGEEEEE-SSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCH-HHHHHHHHCS--SCE
T ss_pred HHHHHHHHHHHH---cCCCccEEEEEe-cCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhcc-HHHHHHhcCC--CCE
Confidence 556666665443 578 77776665 899999999999999999999999999999999997 9999999998 999
Q ss_pred EEEe
Q 015548 173 YGVE 176 (405)
Q Consensus 173 lVV~ 176 (405)
+||+
T Consensus 134 lvv~ 137 (137)
T 2z08_A 134 LLVR 137 (137)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.83 E-value=1.6e-20 Score=160.62 Aligned_cols=138 Identities=11% Similarity=0.076 Sum_probs=101.1
Q ss_pred CCeEEEeecCCHH--HHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHH
Q 015548 14 ALSVAVAVKGNRK--SRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (405)
Q Consensus 14 ~~kILVAVDgS~~--S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~ 91 (405)
.++||||+|+|+. +..|++||+.++...++ ++++|||.++....+. .+...+. + .+..
T Consensus 1 ~k~ILv~vD~s~~~~s~~al~~a~~la~~~~a-~l~ll~v~~~~~~~~~---------~~~~~~~-----~-----~~~~ 60 (143)
T 3fdx_A 1 SNAILVPIDISDKEFTERIISHVESEARIDDA-EVHFLTVIPSLPYYAS---------LGMAYTA-----E-----LPGM 60 (143)
T ss_dssp CCEEEEECCTTCSSCCTTHHHHHHHHHHHHTC-EEEEEEEECC-----------------------------------CH
T ss_pred CCEEEEEecCChHhhHHHHHHHHHHHHHhcCC-eEEEEEEecCCccccc---------ccccccc-----h-----hhhH
Confidence 3799999999999 99999999999876666 5999999987532210 1111000 0 0111
Q ss_pred HHHHHHHHHHHHHHhhhcC---CcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCC
Q 015548 92 KWKTDRLLLPFRNMCAQRR---VEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPS 168 (405)
Q Consensus 92 ~~~~~~~L~~~~~~~~~~g---V~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~ 168 (405)
++..++.++.+.+++++.+ +.++..+.. |++++.|+++|+++++|+||||+++ +++.++++|| ++.+|+++++
T Consensus 61 ~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs-~~~~v~~~~~- 136 (143)
T 3fdx_A 61 DELREGSETQLKEIAKKFSIPEDRMHFHVAE-GSPKDKILALAKSLPADLVIIASHR-PDITTYLLGS-NAAAVVRHAE- 136 (143)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCGGGEEEEEEE-SCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCH-HHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEEEe-cChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeecc-HHHHHHHhCC-
Confidence 2233444555555666654 456777666 8999999999999999999999996 8899999998 9999999998
Q ss_pred CceEEEEe
Q 015548 169 FCTVYGVE 176 (405)
Q Consensus 169 ~C~VlVV~ 176 (405)
|||+||+
T Consensus 137 -~pVlvv~ 143 (143)
T 3fdx_A 137 -CSVLVVR 143 (143)
T ss_dssp -SEEEEEC
T ss_pred -CCEEEeC
Confidence 9999985
No 13
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.79 E-value=2.1e-19 Score=153.49 Aligned_cols=137 Identities=16% Similarity=0.188 Sum_probs=99.5
Q ss_pred CCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCC-CCCCCCccccCCCCCCcccccccchHHHHHHHHHHH
Q 015548 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRIT-SVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK 92 (405)
Q Consensus 14 ~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~-~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~ 92 (405)
+++||||+|+|+.+..|++||+.++...+. ++++|||.++.. ..+ + .. ....+.+.++.+
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a-~l~ll~v~~~~~~~~~-----------~-~~------~~~~~~~~~~~~ 62 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDA-KLSIIHVDVNFSDLYT-----------G-LI------DVNMSSMQDRIS 62 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTC-EEEEEEEEECCGGGCC-----------C-CE------EHHHHHHTTCCC
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCC-EEEEEEEecCchhhhc-----------c-cc------ccchHHHHHHHH
Confidence 689999999999999999999999876666 599999995421 111 1 00 001111211222
Q ss_pred HHHHHHHHHHHHHhhhcCCcE-EEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCce
Q 015548 93 WKTDRLLLPFRNMCAQRRVEV-EVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCT 171 (405)
Q Consensus 93 ~~~~~~L~~~~~~~~~~gV~v-e~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~ 171 (405)
+..++.|+.+ +++.|+++ +..+. .|++++.|+++|+++++|+||||++ ++++.+ + || ++.+|+++++ ||
T Consensus 63 ~~~~~~l~~~---~~~~~~~~~~~~~~-~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~-l-gs-~~~~vl~~~~--~p 132 (141)
T 1jmv_A 63 TETQKALLDL---AESVDYPISEKLSG-SGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK-L-MS-STRQVMNTIK--ID 132 (141)
T ss_dssp CHHHHHHHHH---HHHSSSCCCCEEEE-EECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH-H-HH-HHHHHHTTCC--SE
T ss_pred HHHHHHHHHH---HHHcCCCceEEEEe-cCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh-h-cc-hHHHHHhcCC--CC
Confidence 3344455543 33457776 34444 4899999999999999999999999 888887 3 86 9999999998 99
Q ss_pred EEEEeCCc
Q 015548 172 VYGVEKGK 179 (405)
Q Consensus 172 VlVV~kgk 179 (405)
|+||+.+.
T Consensus 133 Vlvv~~~~ 140 (141)
T 1jmv_A 133 MLVVPLRD 140 (141)
T ss_dssp EEEEECCC
T ss_pred EEEeeCCC
Confidence 99998753
No 14
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.79 E-value=9.1e-19 Score=169.05 Aligned_cols=148 Identities=14% Similarity=0.100 Sum_probs=118.6
Q ss_pred CCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHH
Q 015548 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (405)
Q Consensus 12 ~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~ 91 (405)
..+++||||+|+|+.+..|++||+.++...+. .|++|||.++.... .... ...+..+.+.+..
T Consensus 5 ~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a-~l~ll~v~~~~~~~-----------~~~~-----~~~~~~~~~~~~~ 67 (319)
T 3olq_A 5 EKYQNLLVVIDPNQDDQPALRRAVYIVQRNGG-RIKAFLPVYDLSYD-----------MTTL-----LSPDERNAMRKGV 67 (319)
T ss_dssp CCSCEEEEECCTTCSCCHHHHHHHHHHHHHCC-EEEEEEEECCGGGG-----------CTTT-----SCHHHHHHHHHHH
T ss_pred cccceEEEEECCCcccHHHHHHHHHHHHHcCC-eEEEEEEecccchh-----------hccc-----cChhhHHHHHHHH
Confidence 46799999999999999999999999987766 59999998753210 1111 1122334445555
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCce
Q 015548 92 KWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCT 171 (405)
Q Consensus 92 ~~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~ 171 (405)
.+.+++.|+.+.+.+...|++++..+...|++++.|++++++.++|+||||++|++++.+.++|| ++.+|+++++ ||
T Consensus 68 ~~~~~~~l~~~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs-~~~~vl~~~~--~P 144 (319)
T 3olq_A 68 INQKTAWIKQQARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTP-LDWQLLRKCP--AP 144 (319)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCH-HHHHHHHHCS--SC
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccc-cHHHHHhcCC--CC
Confidence 56777888888888888899999888735999999999999999999999999999999999998 8999999998 99
Q ss_pred EEEEeCCc
Q 015548 172 VYGVEKGK 179 (405)
Q Consensus 172 VlVV~kgk 179 (405)
|+||+.+.
T Consensus 145 Vlvv~~~~ 152 (319)
T 3olq_A 145 VWMVKDKE 152 (319)
T ss_dssp EEEEESSC
T ss_pred EEEecCcc
Confidence 99998753
No 15
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.77 E-value=1.1e-18 Score=164.68 Aligned_cols=149 Identities=15% Similarity=0.074 Sum_probs=113.3
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHH
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWK 94 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~ 94 (405)
++||||+|+|+.+..|++||+.++...+.. ++++||.++..... . .. .+......+. .+..+.+.+..++.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~-l~ll~v~~~~~~~~-~---~~---~~~~~~~~~~-~~~~~~~~~~~~~~ 71 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAP-LTVLFVVDTRLARI-P---EL---LDFGALTVPV-PVLRTELERALALR 71 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCC-EEEEEEEEHHHHTH-H---HH---C-------CH-HHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCc-EEEEEEeccCCccc-c---cc---cCchHHHHHH-HHHHHHHHHHHHHH
Confidence 589999999999999999999999877665 99999997532100 0 00 0100000000 01111224455667
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCC-CcccccccchhhHHHhhhCCCCceEE
Q 015548 95 TDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQG-IFTWKFKKNNLSSRISICVPSFCTVY 173 (405)
Q Consensus 95 ~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s-~l~r~~lGSsVs~~Vvk~ap~~C~Vl 173 (405)
.++.|+.+.+.+...|++++..+.. |++++.|+++ +.++|+||||++|++ ++.+.++|| ++.+|+++++ |||+
T Consensus 72 ~~~~l~~~~~~~~~~g~~~~~~~~~-g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs-~~~~v~~~a~--~PVl 145 (268)
T 3ab8_A 72 GEAVLERVRQSALAAGVAVEAVLEE-GVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGS-TADRVLRASP--VPVL 145 (268)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEE-ECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCH-HHHHHHHHCS--SCEE
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEec-CCHHHHHHhh--ccCCCEEEEeccCCCccccccccch-hHHHHHHhCC--CCEE
Confidence 7888999999998889999888776 8999999999 889999999999999 999999997 9999999998 9999
Q ss_pred EEeCC
Q 015548 174 GVEKG 178 (405)
Q Consensus 174 VV~kg 178 (405)
||+.+
T Consensus 146 vv~~~ 150 (268)
T 3ab8_A 146 LAPGE 150 (268)
T ss_dssp EECSS
T ss_pred EECCC
Confidence 99764
No 16
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.76 E-value=1e-17 Score=161.93 Aligned_cols=143 Identities=14% Similarity=0.164 Sum_probs=111.7
Q ss_pred CCCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHH
Q 015548 11 NSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQE 90 (405)
Q Consensus 11 ~~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e 90 (405)
...+++||||+|+|+.++.|++||+.++...+.. +++|||.++... +.+ .+. .+.+ +.+.
T Consensus 16 ~~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~-l~ll~v~~~~~~-~~~--------~~~------~~~~----~~~~ 75 (309)
T 3cis_A 16 GNSSLGIIVGIDDSPAAQVAVRWAARDAELRKIP-LTLVHAVSPEVA-TWL--------EVP------LPPG----VLRW 75 (309)
T ss_dssp --CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCC-EEEEEECCCCCC-CTT--------CCC------CCHH----HHHH
T ss_pred cCCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCc-EEEEEEecCccc-ccc--------cCC------CCch----hhHH
Confidence 4467999999999999999999999999877665 999999974321 100 011 1111 2233
Q ss_pred HHHHHHHHHHHHHHHhhhc-----CCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhh
Q 015548 91 EKWKTDRLLLPFRNMCAQR-----RVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISIC 165 (405)
Q Consensus 91 ~~~~~~~~L~~~~~~~~~~-----gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ 165 (405)
.++..++.|+.+.+.+... |++++..+.. |++++.|+++++ ++|+||||++|++++.+.++|| ++.+|+++
T Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs-~~~~vl~~ 151 (309)
T 3cis_A 76 QQDHGRHLIDDALKVVEQASLRAGPPTVHSEIVP-AAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGS-VSSGLLRH 151 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSCCSCEEEEEES-SCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCceEEEEEec-CCHHHHHHHHhc--CCCEEEECCCCCccccccccCc-HHHHHHHh
Confidence 4455667777777777665 8999888765 899999999997 7999999999999999999997 99999999
Q ss_pred CCCCceEEEEeCCc
Q 015548 166 VPSFCTVYGVEKGK 179 (405)
Q Consensus 166 ap~~C~VlVV~kgk 179 (405)
++ |||+||+.+.
T Consensus 152 ~~--~PVlvv~~~~ 163 (309)
T 3cis_A 152 AH--CPVVIIHDED 163 (309)
T ss_dssp CS--SCEEEECTTC
T ss_pred CC--CCEEEEcCCc
Confidence 97 9999997653
No 17
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.75 E-value=5.8e-18 Score=162.23 Aligned_cols=138 Identities=10% Similarity=0.030 Sum_probs=103.6
Q ss_pred CCCeEEEeecCCHH-------HHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHH
Q 015548 13 PALSVAVAVKGNRK-------SRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAA 85 (405)
Q Consensus 13 ~~~kILVAVDgS~~-------S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~ 85 (405)
++++||||+|+|+. +..|++||++++...+. +++||||.++... +...| + .
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a-~l~ll~v~~~~~~-------------~~~~~-----~-~-- 190 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKA-TLHVISAHPSPML-------------SSADP-----T-F-- 190 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTC-EEEEEEEEC---------------------------C-H--
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCC-eEEEEEEecCccc-------------cccCc-----h-h--
Confidence 78999999999998 99999999999877766 5999999987531 10011 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCc-EEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhh
Q 015548 86 AYKQEEKWKTDRLLLPFRNMCAQRRVE-VEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISI 164 (405)
Q Consensus 86 ~~~~e~~~~~~~~L~~~~~~~~~~gV~-ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk 164 (405)
.+.++.++..++.|..+ +++.|++ ++..+.. |+++++|+++|+++++|+||||++|++++.++++|| ++.+|++
T Consensus 191 ~~~~~~~~~~~~~l~~~---~~~~g~~~~~~~v~~-g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gs-v~~~vl~ 265 (290)
T 3mt0_A 191 QLSETIEARYREACRTF---QAEYGFSDEQLHIEE-GPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGN-TAEVVLD 265 (290)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHTCCTTTEEEEE-SCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCH-HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH---HHHcCCCcceEEEec-cCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecch-HHHHHHh
Confidence 22233334444555543 3344664 4445455 899999999999999999999999999999999998 9999999
Q ss_pred hCCCCceEEEEeCCc
Q 015548 165 CVPSFCTVYGVEKGK 179 (405)
Q Consensus 165 ~ap~~C~VlVV~kgk 179 (405)
+++ |||+||+...
T Consensus 266 ~~~--~pVLvv~~~~ 278 (290)
T 3mt0_A 266 TLE--SDVLVLKPDD 278 (290)
T ss_dssp TCS--SEEEEECCHH
T ss_pred cCC--CCEEEECCCC
Confidence 998 9999997643
No 18
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.75 E-value=2.3e-18 Score=165.10 Aligned_cols=146 Identities=15% Similarity=0.035 Sum_probs=117.0
Q ss_pred CCCCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHH
Q 015548 10 PNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQ 89 (405)
Q Consensus 10 ~~~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~ 89 (405)
....+++||||+|+|+.+..|++||+.++...+. .|++|||.++..... . . .+. ..+ .+.+
T Consensus 18 ~m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a-~l~ll~v~~~~~~~~-~-----~--~~~------~~~----~~~~ 78 (294)
T 3loq_A 18 LYFQSNAMLLPTDLSENSFKVLEYLGDFKKVGVE-EIGVLFVINLTKLST-V-----S--GGI------DID----HYID 78 (294)
T ss_dssp CSSTTCEEEEECCSCTGGGGGGGGHHHHHHTTCC-EEEEECCEECTTC-------------CC------CTT----HHHH
T ss_pred HHHhhccEEEecCCCHHHHHHHHHHHHHHhhcCC-EEEEEEEecCccccc-c-----c--ccc------cHH----HHHH
Confidence 3456899999999999999999999999877666 599999998753211 0 0 011 111 2334
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEE-EEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCC
Q 015548 90 EEKWKTDRLLLPFRNMCAQRRVEVEV-KVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPS 168 (405)
Q Consensus 90 e~~~~~~~~L~~~~~~~~~~gV~ve~-vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~ 168 (405)
..++.+++.|+.+.+.+...|++++. .+...|+++++| ++++.++|+||||++|++++.+.++|| ++.+|+++++
T Consensus 79 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs-~~~~vl~~~~- 154 (294)
T 3loq_A 79 EMSEKAEEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGS-VSEGVLHDSK- 154 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCC-HHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeecc-HHHHHHhcCC-
Confidence 45567788889998889889999988 555249999999 999999999999999999999999998 9999999998
Q ss_pred CceEEEEeCCc
Q 015548 169 FCTVYGVEKGK 179 (405)
Q Consensus 169 ~C~VlVV~kgk 179 (405)
|||+||+.+.
T Consensus 155 -~PVlvv~~~~ 164 (294)
T 3loq_A 155 -VPVYIFKHDM 164 (294)
T ss_dssp -SCEEEECCCT
T ss_pred -CCEEEecCcc
Confidence 9999997753
No 19
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.74 E-value=1.7e-17 Score=141.30 Aligned_cols=131 Identities=12% Similarity=0.027 Sum_probs=97.1
Q ss_pred CCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEe-cC-CCCCCCCCccccCCCCCC-cccccccchHHHHHHHH
Q 015548 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR-PR-ITSVPTPTSLAIGHPVGN-FIPIEQVRDDVAAAYKQ 89 (405)
Q Consensus 13 ~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~-~~-~~~~ptp~~~~~~~~~G~-~vp~s~~~~d~~~~~~~ 89 (405)
.+++||||+|+|+.+..|++||++++...+. ++++|||. +. +.. + . .+. .+|.. ++ +.+
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a-~l~ll~v~~~~~~~~-~-~--------~~~~~~~~~---~~----~~~ 64 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGA-ELDILAVLEDVYNLE-R-A--------NVTFGLPFP---PE----IKE 64 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCC-EEEEEEECHHHHHHH-H-H--------HHHHCCCCC---TH----HHH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCC-eEEEEEEeccccccc-c-c--------ccccCCCCC---hH----HHH
Confidence 5789999999999999999999999976666 59999999 63 100 0 0 000 01111 11 223
Q ss_pred HHHHHHHHHHHHHHHHh--hhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCC
Q 015548 90 EEKWKTDRLLLPFRNMC--AQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVP 167 (405)
Q Consensus 90 e~~~~~~~~L~~~~~~~--~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap 167 (405)
+.++..++.|+.+ +.+ ...| +++..+.. |++++.|+++|+++++|+||||++|+ | ++.+|+++++
T Consensus 65 ~~~~~~~~~l~~~-~~~~~~~~~-~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~g~---------s-v~~~vl~~a~ 131 (138)
T 1q77_A 65 ESKKRIERRLREV-WEKLTGSTE-IPGVEYRI-GPLSEEVKKFVEGKGYELVVWACYPS---------A-YLCKVIDGLN 131 (138)
T ss_dssp HHHHHHHHHHHHH-HHHHHSCCC-CCCEEEEC-SCHHHHHHHHHTTSCCSEEEECSCCG---------G-GTHHHHHHSS
T ss_pred HHHHHHHHHHHHH-HHHhhccCC-cceEEEEc-CCHHHHHHHHHHhcCCCEEEEeCCCC---------c-hHHHHHHhCC
Confidence 3445566677777 653 4556 67666555 99999999999999999999999986 4 9999999998
Q ss_pred CCceEEEEe
Q 015548 168 SFCTVYGVE 176 (405)
Q Consensus 168 ~~C~VlVV~ 176 (405)
|||+||+
T Consensus 132 --~PVlvv~ 138 (138)
T 1q77_A 132 --LASLIVK 138 (138)
T ss_dssp --SEEEECC
T ss_pred --CceEeeC
Confidence 9999984
No 20
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.73 E-value=1.4e-17 Score=160.61 Aligned_cols=145 Identities=12% Similarity=0.061 Sum_probs=108.8
Q ss_pred CCCCeEEEeecCCH-------HHHHHHHHHHHHhccC--CCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchH
Q 015548 12 SPALSVAVAVKGNR-------KSRYAVLWALEKFIPE--GINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDD 82 (405)
Q Consensus 12 ~~~~kILVAVDgS~-------~S~~AL~wAl~~a~~~--g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d 82 (405)
..+++||||+|+++ .+..|++||+.++... +.. ++||||.++..... +...|..
T Consensus 154 ~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~-l~ll~v~~~~~~~~-----------~~~~~~~----- 216 (319)
T 3olq_A 154 PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPD-VHLLSAYPVAPINI-----------AIELPDF----- 216 (319)
T ss_dssp CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCC-EEEEEEECCCSCSC-----------CTTCTTC-----
T ss_pred ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCe-EEEEEeecCcchhh-----------hccCCcc-----
Confidence 36899999999998 6799999999988766 665 99999998753211 0111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-EEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHH
Q 015548 83 VAAAYKQEEKWKTDRLLLPFRNMCAQRRVE-VEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSR 161 (405)
Q Consensus 83 ~~~~~~~e~~~~~~~~L~~~~~~~~~~gV~-ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~ 161 (405)
....+.++.++..++.|..+. ++.|+. ++..+.. |+++++|+++++++++|+||||++|++++.++++|| ++.+
T Consensus 217 ~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gs-v~~~ 291 (319)
T 3olq_A 217 DPNLYNNALRGQHLIAMKELR---QKFSIPEEKTHVKE-GLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGN-TAEQ 291 (319)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH---HHTTCCGGGEEEEE-SCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHH-HHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH---HHhCCCcccEEEec-CCcHHHHHHHHHHhCCCEEEEeccCccCCccccccH-HHHH
Confidence 122334444455555665543 445553 3444444 899999999999999999999999999999999997 9999
Q ss_pred HhhhCCCCceEEEEeCCcc
Q 015548 162 ISICVPSFCTVYGVEKGKL 180 (405)
Q Consensus 162 Vvk~ap~~C~VlVV~kgk~ 180 (405)
|+++++ |||+||+....
T Consensus 292 vl~~~~--~pVLvv~~~~~ 308 (319)
T 3olq_A 292 LIDHIK--CDLLAIKPDGF 308 (319)
T ss_dssp HHTTCC--SEEEEECCTTC
T ss_pred HHhhCC--CCEEEECCCCC
Confidence 999998 99999987653
No 21
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.72 E-value=6.7e-17 Score=156.19 Aligned_cols=136 Identities=15% Similarity=0.194 Sum_probs=103.4
Q ss_pred CCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHH
Q 015548 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (405)
Q Consensus 12 ~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~ 91 (405)
..+++|+||+|+++.+..|++||+.++...+.. +++|||.++....+ .+. .. .+.+.
T Consensus 169 ~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~-l~ll~v~~~~~~~~--------------~~~--~~---~~~~~--- 225 (309)
T 3cis_A 169 PQQAPVLVGVDGSSASELATAIAFDEASRRNVD-LVALHAWSDVDVSE--------------WPG--ID---WPATQ--- 225 (309)
T ss_dssp SCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCC-EEEEEESCSSCCTT--------------CSS--CC---HHHHH---
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCE-EEEEEEeecccccC--------------CCc--cc---HHHHH---
Confidence 457899999999999999999999998777665 99999987642110 000 01 11122
Q ss_pred HHHHHHHHHHHHHHhhh--cCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCC
Q 015548 92 KWKTDRLLLPFRNMCAQ--RRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSF 169 (405)
Q Consensus 92 ~~~~~~~L~~~~~~~~~--~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~ 169 (405)
++.++.++.+.+.+.. .|++++..+.. |+++++|+++++ ++|+||||++|++++.++++|| ++.+|+++++
T Consensus 226 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gs-v~~~vl~~~~-- 298 (309)
T 3cis_A 226 -SMAEQVLAERLAGWQERYPNVAITRVVVR-DQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGS-VGETVAQLAR-- 298 (309)
T ss_dssp -HHHHHHHHHHHTTHHHHCTTSCEEEEEES-SCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCH-HHHHHHHHCS--
T ss_pred -HHHHHHHHHHHHHHHhhCCCCcEEEEEEc-CCHHHHHHHhhC--CCCEEEECCCCCCCccccccCc-HHHHHHhcCC--
Confidence 2233334333333322 48888887665 899999999997 8999999999999999999997 9999999998
Q ss_pred ceEEEEeC
Q 015548 170 CTVYGVEK 177 (405)
Q Consensus 170 C~VlVV~k 177 (405)
|||+||+.
T Consensus 299 ~pVlvv~~ 306 (309)
T 3cis_A 299 TPVIVARE 306 (309)
T ss_dssp SCEEEECC
T ss_pred CCEEEeCC
Confidence 99999975
No 22
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.71 E-value=9e-17 Score=153.99 Aligned_cols=124 Identities=19% Similarity=0.157 Sum_probs=105.2
Q ss_pred CCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHH
Q 015548 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (405)
Q Consensus 12 ~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~ 91 (405)
..+++|+||+|+++.+..|++||+.++...+. ++++|||.++..
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~-~l~ll~v~~~~~----------------------------------- 211 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKKTGG-ELHIIHVSEDGD----------------------------------- 211 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHHHTC-EEEEEEECSSSC-----------------------------------
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhhcCC-EEEEEEEccCch-----------------------------------
Confidence 56799999999999999999999998876666 499999986620
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCce
Q 015548 92 KWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCT 171 (405)
Q Consensus 92 ~~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~ 171 (405)
.++.++.+.+.+.+.|++++..+.. |+++++|++++++.++|+||||++|++++.++++|| ++.+|+++++ ||
T Consensus 212 ---~~~~l~~~~~~l~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs-~~~~vl~~~~--~p 284 (294)
T 3loq_A 212 ---KTADLRVMEEVIGAEGIEVHVHIES-GTPHKAILAKREEINATTIFMGSRGAGSVMTMILGS-TSESVIRRSP--VP 284 (294)
T ss_dssp ---CHHHHHHHHHHHHHTTCCEEEEEEC-SCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHC-HHHHHHHHCS--SC
T ss_pred ---HHHHHHHHHHHHHHcCCcEEEEEec-CCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCc-HHHHHHhcCC--CC
Confidence 0123344445555678988887665 899999999999999999999999999999999998 9999999998 99
Q ss_pred EEEEeCC
Q 015548 172 VYGVEKG 178 (405)
Q Consensus 172 VlVV~kg 178 (405)
|+||+.+
T Consensus 285 vLvv~~~ 291 (294)
T 3loq_A 285 VFVCKRG 291 (294)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9999875
No 23
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.71 E-value=2.7e-17 Score=157.61 Aligned_cols=125 Identities=12% Similarity=0.032 Sum_probs=105.1
Q ss_pred CCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHH
Q 015548 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (405)
Q Consensus 12 ~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~ 91 (405)
..+++||||+|+|+.+..|++||+.++...+. .+++|||.++. ..
T Consensus 5 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a-~l~ll~v~~~~--------------~~-------------------- 49 (290)
T 3mt0_A 5 QAIRSILVVIEPDQLEGLALKRAQLIAGVTQS-HLHLLVCEKRR--------------DH-------------------- 49 (290)
T ss_dssp TTCCEEEEECCSSCSCCHHHHHHHHHHHHHCC-EEEEEEECSSS--------------CC--------------------
T ss_pred hhhceEEEEeCCCccchHHHHHHHHHHHhcCC-eEEEEEeeCcH--------------HH--------------------
Confidence 45799999999999999999999999987766 59999998631 01
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCce
Q 015548 92 KWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCT 171 (405)
Q Consensus 92 ~~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~ 171 (405)
++.|+.+.+.+...|++++..+..+|++++.|++++++.++|+||||++|++++.+.++|+ ++.+|+++++ ||
T Consensus 50 ----~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs-~~~~vl~~~~--~P 122 (290)
T 3mt0_A 50 ----SAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTP-DDWKLLRFAP--CP 122 (290)
T ss_dssp ----HHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCH-HHHHHHHHCS--SC
T ss_pred ----HHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCH-HHHHHHhcCC--CC
Confidence 1123333334456799999888766899999999999999999999999999999999998 9999999998 99
Q ss_pred EEEEeCC
Q 015548 172 VYGVEKG 178 (405)
Q Consensus 172 VlVV~kg 178 (405)
|+||+.+
T Consensus 123 Vlvv~~~ 129 (290)
T 3mt0_A 123 VLMTKTA 129 (290)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 9999854
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.60 E-value=4e-15 Score=140.23 Aligned_cols=116 Identities=12% Similarity=0.062 Sum_probs=96.0
Q ss_pred CCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHH
Q 015548 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK 92 (405)
Q Consensus 13 ~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~ 92 (405)
++++|+||+|+++.+..|++||.+++...+.. ++++||.++.
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~-l~ll~v~~~~------------------------------------- 194 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALGLG-VRVVSVHEDP------------------------------------- 194 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCC-EEEEEECSSH-------------------------------------
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCE-EEEEEEcCcH-------------------------------------
Confidence 67899999999999999999999988766665 9999997541
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceE
Q 015548 93 WKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTV 172 (405)
Q Consensus 93 ~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~V 172 (405)
+..++.++.+.+.+.+.|++++..+.. |+++++|+++++++ |+||||+ ++.++++|| ++.+|+++++ |||
T Consensus 195 ~~~~~~l~~~~~~l~~~~~~~~~~~~~-g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs-~~~~vl~~~~--~pv 264 (268)
T 3ab8_A 195 ARAEAWALEAEAYLRDHGVEASALVLG-GDAADHLLRLQGPG--DLLALGA----PVRRLVFGS-TAERVIRNAQ--GPV 264 (268)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEC-SCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCC-HHHHHHHHCS--SCE
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEeC-CChHHHHHHHHHhC--CEEEECC----cccccEecc-HHHHHHhcCC--CCE
Confidence 011233444555566678998887665 89999999999998 9999999 688999998 9999999998 999
Q ss_pred EEEe
Q 015548 173 YGVE 176 (405)
Q Consensus 173 lVV~ 176 (405)
+||+
T Consensus 265 lvv~ 268 (268)
T 3ab8_A 265 LTAR 268 (268)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9984
No 25
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=92.34 E-value=0.81 Score=46.76 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=65.2
Q ss_pred CCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHH
Q 015548 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (405)
Q Consensus 12 ~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~ 91 (405)
.+..+|+||+.|...|..++.++.+.....+- ++..+||.... .|.
T Consensus 16 ~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~-~v~avhvdhgl--------------rg~------------------- 61 (464)
T 3a2k_A 16 SEGAAVIVGVSGGPDSLALLHVFLSLRDEWKL-QVIAAHVDHMF--------------RGR------------------- 61 (464)
T ss_dssp SCSSBEEEECCSSHHHHHHHHHHHHHHHTTTC-BCEEEEEECTT--------------CTH-------------------
T ss_pred CCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCC-eEEEEEEECCC--------------Ccc-------------------
Confidence 45689999999999999888777665433444 49999986432 010
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEEec-------C-CH--------HHHHHHHHHhCCCCEEEEccCCC
Q 015548 92 KWKTDRLLLPFRNMCAQRRVEVEVKVIES-------D-DV--------AKAIADEVASCNINKLVIGAQSQ 146 (405)
Q Consensus 92 ~~~~~~~L~~~~~~~~~~gV~ve~vvle~-------G-d~--------aeaIvd~A~e~~aDlIVmGs~g~ 146 (405)
...+..+..+++|+..||++..+-+.. + ++ ...+.++|++++++.|++|.|..
T Consensus 62 --~s~~~~~~v~~~~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~d 130 (464)
T 3a2k_A 62 --ESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGD 130 (464)
T ss_dssp --HHHHHHHHHHHHHHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHH
T ss_pred --ccHHHHHHHHHHHHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChH
Confidence 011123345567888899876665431 1 11 24566788999999999998753
No 26
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=90.96 E-value=2.8 Score=40.31 Aligned_cols=97 Identities=13% Similarity=0.027 Sum_probs=61.0
Q ss_pred CCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCE-EEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHH
Q 015548 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINL-FKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQE 90 (405)
Q Consensus 12 ~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~-l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e 90 (405)
.+.++|+||+.|...|-.++.++.+.....+ .+ +..+||-.... +.
T Consensus 22 ~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g-~~~v~av~vd~g~r------------------~~-------------- 68 (317)
T 1wy5_A 22 SGERRVLIAFSGGVDSVVLTDVLLKLKNYFS-LKEVALAHFNHMLR------------------ES-------------- 68 (317)
T ss_dssp SSCCEEEEECCSSHHHHHHHHHHHHSTTTTT-CSEEEEEEEECCSS------------------TH--------------
T ss_pred CCCCEEEEEecchHHHHHHHHHHHHHHHHcC-CCEEEEEEEECCCC------------------cc--------------
Confidence 4568999999999999988877665433223 35 88899853310 00
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEEEEe--------cCCHH--------HHHHHHHHhCCCCEEEEccCC
Q 015548 91 EKWKTDRLLLPFRNMCAQRRVEVEVKVIE--------SDDVA--------KAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 91 ~~~~~~~~L~~~~~~~~~~gV~ve~vvle--------~Gd~a--------eaIvd~A~e~~aDlIVmGs~g 145 (405)
..+..+..+++|+..||+...+-+. +.++. ..+.+++++++++.|++|.+.
T Consensus 69 ----s~~~~~~v~~~a~~lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~ 135 (317)
T 1wy5_A 69 ----AERDEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHL 135 (317)
T ss_dssp ----HHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCH
T ss_pred ----cHHHHHHHHHHHHHcCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 0112233445677778887665432 01111 245678899999999999875
No 27
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=83.44 E-value=6.7 Score=33.85 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEE-EEEEecCCHHHHHHHHHHhCC--CCEEEEccCCCCCcccccccchhhHHHhhhCC
Q 015548 91 EKWKTDRLLLPFRNMCAQRRVEVE-VKVIESDDVAKAIADEVASCN--INKLVIGAQSQGIFTWKFKKNNLSSRISICVP 167 (405)
Q Consensus 91 ~~~~~~~~L~~~~~~~~~~gV~ve-~vvle~Gd~aeaIvd~A~e~~--aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap 167 (405)
.++.+++.|......++..|+.++ -.+.+ ++|..+|.+.+.+.+ +|-||+-+.-+ .+.++|-- +++++.-+ ..
T Consensus 52 a~~~A~~~l~~sl~aL~~~G~~a~~G~v~d-~~Pl~AL~~~v~~~~~~~deiIV~T~Ph-~vs~~fh~-DwasrAr~-~g 127 (138)
T 2iel_A 52 VRRRAEEEAAAAKRALEAQGIPVEEAKAGD-ISPLLAIEEELLAHPGAYQGIVLSTLPP-GLSRWLRL-DVHTQAER-FG 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCSEEEEEE-SSHHHHHHHHHHHSTTSCSEEEEEECCT-TTCHHHHT-THHHHGGG-GS
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccccccCC-CChHHHHHHHHHhcCCCCceEEEEcCCc-hHHHHHhc-cHHHHHHh-cC
Confidence 345566777777777888999998 77776 899999999999999 99999977764 46676654 58888766 53
Q ss_pred CCceEEEEe
Q 015548 168 SFCTVYGVE 176 (405)
Q Consensus 168 ~~C~VlVV~ 176 (405)
.||+-+-
T Consensus 128 --vPVlhl~ 134 (138)
T 2iel_A 128 --LPVIHVI 134 (138)
T ss_dssp --SCEEEEE
T ss_pred --CCEEEEe
Confidence 7786653
No 28
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=79.62 E-value=9.6 Score=37.01 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=29.1
Q ss_pred CCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEec
Q 015548 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (405)
Q Consensus 14 ~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (405)
+.+|+|++.|.+.|.-.|..+.+.+...+-. +.++|+-.
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~-i~vv~vDt 84 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLP-FPVMHVDT 84 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCS-SCEEEECC
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCC-EEEEEEEC
Confidence 4689999999999998888887765432333 88888753
No 29
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=78.92 E-value=3.4 Score=41.77 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=30.7
Q ss_pred CCCeEEEeecCCHHHHHHHHHHHHHhcc-CCCCEEEEEEEecC
Q 015548 13 PALSVAVAVKGNRKSRYAVLWALEKFIP-EGINLFKLLHVRPR 54 (405)
Q Consensus 13 ~~~kILVAVDgS~~S~~AL~wAl~~a~~-~g~~~l~LLHV~~~ 54 (405)
+..+|+||+.|...|..++.++.+.... .+- +++++||...
T Consensus 12 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~-~v~avhvdhg 53 (433)
T 1ni5_A 12 TSRQILVAFSGGLDSTVLLHQLVQWRTENPGV-ALRAIHVHHG 53 (433)
T ss_dssp TCSEEEEECCSBHHHHHHHHHHHHHHTTSTTC-EEEEEEECCS
T ss_pred CCCEEEEEEcchHHHHHHHHHHHHHHHhcCCC-eEEEEEEECC
Confidence 4579999999999999888777664433 333 5999998643
No 30
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=77.67 E-value=5.2 Score=41.05 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=30.7
Q ss_pred CCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 12 ~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
.+.++|+||+.|...|-.++.|+.+. +. +++.+|+--.
T Consensus 8 ~~~~KVvVA~SGGlDSSvll~~L~e~----G~-eViavtvd~G 45 (455)
T 1k92_A 8 PVGQRIGIAFSGGLDTSAALLWMRQK----GA-VPYAYTANLG 45 (455)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHT----TC-EEEEEEEECC
T ss_pred cCCCeEEEEEcChHHHHHHHHHHHHc----CC-EEEEEEEEcC
Confidence 35689999999999999999998762 44 5889998644
No 31
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=72.98 E-value=2.1 Score=32.01 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=33.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHhhhhhccccch
Q 015548 324 QVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKV 359 (405)
Q Consensus 324 q~~~~~E~ekLrlELrh~~~my~~aq~E~~~As~k~ 359 (405)
...+..+||++|-||-.+-.-|...-.|+|..||.|
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeL 38 (62)
T 2bzb_A 3 MGQLKNKIENKKKELIQLVARHGLDHDKVLLFSRDL 38 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 467889999999999999999999999999999998
No 32
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=71.82 E-value=34 Score=30.33 Aligned_cols=35 Identities=0% Similarity=-0.095 Sum_probs=26.5
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
.+|+||+.|.+.|.-+|..+.+ +. .. +.++|+-..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~-~~---~~-v~~v~vd~g 79 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQ-IR---PD-IPVILTDTG 79 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHH-HS---TT-CEEEEEECS
T ss_pred CCEEEEecCCHHHHHHHHHHHH-hC---CC-CeEEEeeCC
Confidence 5899999999999877776655 32 23 888887644
No 33
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=68.10 E-value=47 Score=29.08 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=27.7
Q ss_pred CCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 14 ~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
.++|+|++.|...|-.++.++.+. +. +++.+|+...
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~----~~-~v~~~~~~~~ 38 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE----FE-EVETVTFHYN 38 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----CS-EEEEEEEESS
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc----CC-ceEEEEEeCC
Confidence 368999999999999888877653 23 4888888744
No 34
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=66.58 E-value=15 Score=32.78 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=44.9
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHH---hCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEe
Q 015548 100 LPFRNMCAQRRVEVEVKVIESDDVAKAIADEVA---SCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (405)
Q Consensus 100 ~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~---e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~ 176 (405)
++....+++.||+++..+..-+...+.+.+|++ +.+++.||.|+-+-..+...+-| ..+ +||+-|+
T Consensus 29 ~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~---------~t~--~PVIgVP 97 (173)
T 4grd_A 29 KHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAA---------KTT--VPVLGVP 97 (173)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHH---------HCC--SCEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhhee---------cCC--CCEEEEE
Confidence 333445566789999888765666666666654 47899999998886654443322 334 8899986
Q ss_pred C
Q 015548 177 K 177 (405)
Q Consensus 177 k 177 (405)
-
T Consensus 98 v 98 (173)
T 4grd_A 98 V 98 (173)
T ss_dssp E
T ss_pred c
Confidence 4
No 35
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=65.59 E-value=2.9 Score=31.42 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=33.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHhhhhhccccch
Q 015548 324 QVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKV 359 (405)
Q Consensus 324 q~~~~~E~ekLrlELrh~~~my~~aq~E~~~As~k~ 359 (405)
.+.++.+||++|-||-.+-.-|...-.|+|..||.|
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeL 38 (64)
T 2c0s_A 3 VTKLNDRIEAKKKELIYLVEKYGFTHHKVISFSQEL 38 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 367889999999999999999999999999999998
No 36
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=63.94 E-value=29 Score=35.19 Aligned_cols=113 Identities=10% Similarity=0.063 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015548 28 RYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCA 107 (405)
Q Consensus 28 ~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~~~~L~~~~~~~~ 107 (405)
..||..|++.+...+.+ ++.|.|.++... . .| . .-..-..+-|..+.+.++
T Consensus 52 N~aL~~A~~~a~~~~~~-v~~vfi~dp~~~-~----------~~---------~--------~r~~Fl~~sL~~L~~~L~ 102 (482)
T 2xry_A 52 NWALLFSRAIAKEANVP-VVVVFCLTDEFL-E----------AG---------I--------RQYEFMLKGLQELEVSLS 102 (482)
T ss_dssp CHHHHHHHHHHHHHTSC-EEEEEEECTTGG-G----------SC---------H--------HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCc-EEEEEEeChhhh-c----------cC---------H--------HHHHHHHHHHHHHHHHHH
Confidence 45677777655334455 999999987421 0 11 0 001223445566666677
Q ss_pred hcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEeCCcc
Q 015548 108 QRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKL 180 (405)
Q Consensus 108 ~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kgk~ 180 (405)
+.|+.... +. |++.+.|.+++++++|+.|+.-... ....+. .-..|.+... |++..+...-+
T Consensus 103 ~~G~~L~v--~~-g~~~~~l~~l~~~~~~~~V~~~~~~-~~~~~~-----~~~~v~~~lg--i~~~~~~~~~l 164 (482)
T 2xry_A 103 RKKIPSFF--LR-GDPGEKISRFVKDYNAGTLVTDFSP-LRIKNQ-----WIEKVISGIS--IPFFEVDAHNV 164 (482)
T ss_dssp HTTCCEEE--EE-SCHHHHHHHHHHHTTCSEEEEECCC-SHHHHH-----HHHHHHHHCC--SCEEEECCSSS
T ss_pred HcCCcEEE--Ee-CCHHHHHHHHHHHcCCCEEEEeccc-chhHHH-----HHHHHHHHcC--CEEEEEeCCEE
Confidence 77887543 44 8999999999999999999985433 211111 1233333333 77777755433
No 37
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=62.75 E-value=24 Score=31.73 Aligned_cols=68 Identities=12% Similarity=0.112 Sum_probs=46.3
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHH---hCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEE
Q 015548 99 LLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVA---SCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (405)
Q Consensus 99 L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~---e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV 175 (405)
+++..+.+++.||+++..++.-..-.+.+.+|++ +.+++.||.|+-+-..+...+-+ ..+ .||+-|
T Consensus 38 ~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvAa---------~T~--~PVIGV 106 (181)
T 4b4k_A 38 MKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAA---------KTN--LPVIGV 106 (181)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHT---------TCC--SCEEEE
T ss_pred HHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhHHh---------cCC--CCEEEE
Confidence 3344445666799999988866676677777765 46789999998876654443322 333 789988
Q ss_pred eC
Q 015548 176 EK 177 (405)
Q Consensus 176 ~k 177 (405)
+-
T Consensus 107 Pv 108 (181)
T 4b4k_A 107 PV 108 (181)
T ss_dssp EC
T ss_pred ec
Confidence 65
No 38
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=62.35 E-value=23 Score=31.13 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=48.4
Q ss_pred HHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEeC
Q 015548 101 PFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (405)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~k 177 (405)
+....++..|++++..+..-..-.+.+.+++++...+.||.|+-+-.++...+-| ..+ +||+-|+.
T Consensus 17 ~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpgvva~---------~t~--~PVIgVP~ 82 (157)
T 2ywx_A 17 KAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGVVAS---------LTT--KPVIAVPV 82 (157)
T ss_dssp HHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHHHHHT---------TCS--SCEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHHHHHh---------ccC--CCEEEecC
Confidence 3444555679999988876678888999999987778999888876665544333 334 88998876
No 39
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=62.15 E-value=46 Score=33.16 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=30.5
Q ss_pred CCCCCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEec
Q 015548 9 LPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (405)
Q Consensus 9 ~~~~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (405)
++.....+|+|++.|...|-.++.++.+ .|. +++.||+..
T Consensus 182 lpi~~~~kvlvalSGGvDS~vll~ll~~----~G~-~v~av~v~~ 221 (413)
T 2c5s_A 182 LPVGVGGKVMVLLSGGIDSPVAAYLTMK----RGV-SVEAVHFHS 221 (413)
T ss_dssp BCTTTTEEEEEECCSSSHHHHHHHHHHH----BTE-EEEEEEEEC
T ss_pred CccCCCCeEEEEeCCCChHHHHHHHHHH----cCC-cEEEEEEeC
Confidence 3455578999999999999888877754 244 489999874
No 40
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=61.65 E-value=28 Score=34.80 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=28.8
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
++|+|++.|...|-.++.|+.+.+ +. +++.+||-..
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~---g~-~V~av~vd~g 36 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETY---RA-EVIAFTADIG 36 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH---TC-EEEEEEEESS
T ss_pred CcEEEEEeChHHHHHHHHHHHHhh---CC-cEEEEEEeCC
Confidence 479999999999999999987754 23 4888898644
No 41
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=60.83 E-value=18 Score=36.32 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=28.6
Q ss_pred CCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 14 ~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
.++|+|++.|...|-.++.|+.+. +. +++.+|+...
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~----G~-eV~av~vd~g 40 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ----GY-DVIAYLANIG 40 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT----TE-EEEEEEEESS
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----CC-EEEEEEEECC
Confidence 468999999999999999998663 33 4888887643
No 42
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=60.23 E-value=83 Score=28.06 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=27.3
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEec
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (405)
++|+|++.|...|--++.|+.+.. . +++.+|+..
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~~----~-~v~av~~~~ 36 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQDY----D-DVHCITFDY 36 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHC----S-EEEEEEEES
T ss_pred CCEEEEecCcHHHHHHHHHHHHcC----C-CEEEEEEEC
Confidence 689999999999999998887642 3 488888753
No 43
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=59.78 E-value=24 Score=31.59 Aligned_cols=67 Identities=10% Similarity=0.102 Sum_probs=46.2
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHh---CCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEe
Q 015548 100 LPFRNMCAQRRVEVEVKVIESDDVAKAIADEVAS---CNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (405)
Q Consensus 100 ~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e---~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~ 176 (405)
++....++..|++++..+..-..-.+.+.+++++ .+++.||.|+-+-.++...+-| ..+ +||+-|+
T Consensus 29 ~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~---------~t~--~PVIgVP 97 (174)
T 3kuu_A 29 QFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAA---------KTL--VPVLGVP 97 (174)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHH---------TCS--SCEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHh---------ccC--CCEEEee
Confidence 3444456667999998887666777777777654 6789999988876654443322 334 8898886
Q ss_pred C
Q 015548 177 K 177 (405)
Q Consensus 177 k 177 (405)
.
T Consensus 98 ~ 98 (174)
T 3kuu_A 98 V 98 (174)
T ss_dssp E
T ss_pred C
Confidence 5
No 44
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=59.59 E-value=27 Score=31.09 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=45.8
Q ss_pred HHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHh---CCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEeC
Q 015548 101 PFRNMCAQRRVEVEVKVIESDDVAKAIADEVAS---CNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (405)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e---~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~k 177 (405)
+....|+..|++++..+..-....+.+.+++++ .+++.||.|+-+-..+...+-| .++ +||+-|+.
T Consensus 29 ~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~---------~t~--~PVIgVP~ 97 (170)
T 1xmp_A 29 YACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAA---------KTN--LPVIGVPV 97 (170)
T ss_dssp HHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHT---------TCC--SCEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHh---------ccC--CCEEEeeC
Confidence 344455567999998887656677777787764 5689999888876665544333 334 88998865
No 45
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=58.58 E-value=28 Score=30.86 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=46.0
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHh---CCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEe
Q 015548 100 LPFRNMCAQRRVEVEVKVIESDDVAKAIADEVAS---CNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (405)
Q Consensus 100 ~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e---~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~ 176 (405)
++....++..|+.++..+..-..-.+.+.+++++ .+++.||.|+-+-.++...+-| ..+ +||+-|+
T Consensus 22 ~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~---------~t~--~PVIgVP 90 (166)
T 3oow_A 22 KECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAA---------KTT--LPVLGVP 90 (166)
T ss_dssp HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHH---------TCS--SCEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHh---------ccC--CCEEEee
Confidence 3344455667999998887666777778887764 4689999988876654443322 334 8899886
Q ss_pred C
Q 015548 177 K 177 (405)
Q Consensus 177 k 177 (405)
.
T Consensus 91 ~ 91 (166)
T 3oow_A 91 V 91 (166)
T ss_dssp C
T ss_pred c
Confidence 5
No 46
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=58.11 E-value=21 Score=31.73 Aligned_cols=67 Identities=10% Similarity=0.033 Sum_probs=44.9
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCHHHHHHHHH---HhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEe
Q 015548 100 LPFRNMCAQRRVEVEVKVIESDDVAKAIADEV---ASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (405)
Q Consensus 100 ~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A---~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~ 176 (405)
++....|+..|++++..+..-..-.+.+.+++ ++.+++.||.|+-+-.++...+-| ..+ +||+-|+
T Consensus 23 ~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~---------~t~--~PVIgVP 91 (169)
T 3trh_A 23 ETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTIAA---------HTL--KPVIGVP 91 (169)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHHHH---------TCS--SCEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHh---------cCC--CCEEEee
Confidence 33444566679999988776566666666665 457899998888776654443322 334 8899886
Q ss_pred C
Q 015548 177 K 177 (405)
Q Consensus 177 k 177 (405)
.
T Consensus 92 ~ 92 (169)
T 3trh_A 92 M 92 (169)
T ss_dssp C
T ss_pred c
Confidence 5
No 47
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=57.54 E-value=57 Score=31.14 Aligned_cols=99 Identities=12% Similarity=0.157 Sum_probs=56.9
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccC-----------------CCCEEEEEEEecCCCCCCCCCccccCCCCCCccccc
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPE-----------------GINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIE 77 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~-----------------g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s 77 (405)
.+|+|+..|.+.|.-.|..+.+.+... ....+.+||+-... .+
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~-----------------~f--- 113 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEE-----------------TF--- 113 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTT-----------------CC---
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCC-----------------CC---
Confidence 589999999999988887776543110 11237788865332 11
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEe---cCCHHHHHHHHHHhC-CCCEEEEccCCCCCccc
Q 015548 78 QVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIE---SDDVAKAIADEVASC-NINKLVIGAQSQGIFTW 151 (405)
Q Consensus 78 ~~~~d~~~~~~~e~~~~~~~~L~~~~~~~~~~gV~ve~vvle---~Gd~aeaIvd~A~e~-~aDlIVmGs~g~s~l~r 151 (405)
++. .++.+ +++++.|+++..+... .....+++.++++.. .++.|++|.+..-...+
T Consensus 114 ---pet------------~~fv~---~~~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdds~~r 173 (306)
T 2wsi_A 114 ---PTL------------ENFVL---ETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTDPFGE 173 (306)
T ss_dssp ---HHH------------HHHHH---HHHHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCSSSCC
T ss_pred ---HHH------------HHHHH---HHHHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccccccc
Confidence 111 11111 2334456665333111 134667777887774 68899999998655444
No 48
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=56.78 E-value=28 Score=31.36 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=46.1
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHh---CCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEe
Q 015548 100 LPFRNMCAQRRVEVEVKVIESDDVAKAIADEVAS---CNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (405)
Q Consensus 100 ~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e---~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~ 176 (405)
++....|+..||+++..+..-..-.+.+.+++++ .+++.||.|+-+-.++...+-| ..+ +||+-|+
T Consensus 38 ~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~---------~t~--~PVIgVP 106 (182)
T 1u11_A 38 RHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAA---------WTR--LPVLGVP 106 (182)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHH---------HCS--SCEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHh---------ccC--CCEEEee
Confidence 3344455667999998887667777888888764 4689998888876654443322 334 8899886
Q ss_pred C
Q 015548 177 K 177 (405)
Q Consensus 177 k 177 (405)
.
T Consensus 107 ~ 107 (182)
T 1u11_A 107 V 107 (182)
T ss_dssp E
T ss_pred C
Confidence 5
No 49
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=56.46 E-value=29 Score=30.65 Aligned_cols=67 Identities=18% Similarity=0.154 Sum_probs=45.4
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHH---hCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEe
Q 015548 100 LPFRNMCAQRRVEVEVKVIESDDVAKAIADEVA---SCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (405)
Q Consensus 100 ~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~---e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~ 176 (405)
++....++..|++++..+..-..-.+.+.++++ +.+++.||.|+-+-.++...+-| ..+ +||+-|+
T Consensus 20 ~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~---------~t~--~PVIgVP 88 (163)
T 3ors_A 20 QESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVAS---------LTT--LPVIGVP 88 (163)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHH---------HCS--SCEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHh---------ccC--CCEEEee
Confidence 334445566799999888766677777777765 45789999888876654443322 334 8898885
Q ss_pred C
Q 015548 177 K 177 (405)
Q Consensus 177 k 177 (405)
.
T Consensus 89 ~ 89 (163)
T 3ors_A 89 I 89 (163)
T ss_dssp E
T ss_pred C
Confidence 4
No 50
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=56.04 E-value=64 Score=29.81 Aligned_cols=37 Identities=5% Similarity=-0.193 Sum_probs=26.8
Q ss_pred CCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEe
Q 015548 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (405)
Q Consensus 14 ~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (405)
+.+|+|++.|.+.|.-.|..+.+.... +. .+.++|+-
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~-~i~vv~iD 77 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YY-MPELLFID 77 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SC-CCEEEEEC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CC-CeeEEEec
Confidence 347999999999998777777664432 23 38888874
No 51
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=54.49 E-value=38 Score=33.42 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=27.9
Q ss_pred CCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 13 ~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
+.++|+|++.|...|--++.++.+ . +- +++.||+...
T Consensus 8 ~~~kVlVa~SGGvDSsv~a~lL~~-~---G~-~V~~v~~~~~ 44 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKE-Q---GY-DVIGIFMKNW 44 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHH-T---TC-EEEEEEEECC
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHH-c---CC-cEEEEEEECC
Confidence 457999999999999888766654 2 34 4888888654
No 52
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=53.89 E-value=38 Score=34.92 Aligned_cols=83 Identities=13% Similarity=-0.008 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015548 28 RYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCA 107 (405)
Q Consensus 28 ~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~~~~L~~~~~~~~ 107 (405)
-.||..|++.+...+.+ |+.|+|.++....+ . .|. .-.+-+.+-|....+-++
T Consensus 53 N~AL~~A~~~a~~~~~p-Vl~vfildp~~~~~-~--------~~~-----------------~r~~FL~~sL~dL~~~L~ 105 (506)
T 3umv_A 53 NWALLHAAGLAAASASP-LAVAFALFPRPFLL-S--------ARR-----------------RQLGFLLRGLRRLAADAA 105 (506)
T ss_dssp CHHHHHHHHHHHHHTCC-EEEEEECCCTTCGG-G--------CCH-----------------HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhhhcCCC-EEEEEeccchhhcc-C--------CCH-----------------HHHHHHHHHHHHHHHHHH
Confidence 45777787766444555 99999998753211 0 110 001223344555555666
Q ss_pred hcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEE
Q 015548 108 QRRVEVEVKVIESDDVAKAIADEVASCNINKLVI 141 (405)
Q Consensus 108 ~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVm 141 (405)
+.|+.. +++. |++.+. .+++++++|+.|+.
T Consensus 106 ~lG~~L--~v~~-G~p~~v-~~L~~~~~a~~V~~ 135 (506)
T 3umv_A 106 ARHLPF--FLFT-GGPAEI-PALVQRLGASTLVA 135 (506)
T ss_dssp HTTCCE--EEES-SCTTHH-HHHHHHTTCSEEEE
T ss_pred HcCCce--EEEe-cChHHH-HHHHHhcCCCEEEe
Confidence 678764 3344 999999 99999999999997
No 53
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=53.05 E-value=33 Score=30.88 Aligned_cols=67 Identities=10% Similarity=0.151 Sum_probs=45.0
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHH---hCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEe
Q 015548 100 LPFRNMCAQRRVEVEVKVIESDDVAKAIADEVA---SCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (405)
Q Consensus 100 ~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~---e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~ 176 (405)
++....++..|++++..+..-....+.+.++++ +.+++.||.|+-+-..+...+-| ..+ +||+-|+
T Consensus 30 ~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~---------~t~--~PVIgVP 98 (183)
T 1o4v_A 30 KQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVAS---------ITH--LPVIGVP 98 (183)
T ss_dssp HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHH---------HCS--SCEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHh---------ccC--CCEEEee
Confidence 334445556799999888765666677777765 45689998888876654443322 334 8899886
Q ss_pred C
Q 015548 177 K 177 (405)
Q Consensus 177 k 177 (405)
.
T Consensus 99 ~ 99 (183)
T 1o4v_A 99 V 99 (183)
T ss_dssp E
T ss_pred C
Confidence 5
No 54
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=52.49 E-value=69 Score=32.71 Aligned_cols=35 Identities=23% Similarity=0.145 Sum_probs=27.7
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
.+|+||+.|...|--++.++.+ + +. +++.+||-..
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~-~---g~-~v~av~vd~g 244 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAK-A---GV-DHLAVFVDHG 244 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHH-H---TC-EEEEEEEECS
T ss_pred ccEEEEecCCcchHHHHHHHHH-c---CC-eEEEEEEeCC
Confidence 7899999999999988877765 3 44 4999998543
No 55
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=52.31 E-value=69 Score=30.58 Aligned_cols=40 Identities=13% Similarity=0.123 Sum_probs=28.6
Q ss_pred cCCCCCCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEe
Q 015548 7 VELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (405)
Q Consensus 7 ~~~~~~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (405)
+++|.....+++|++.| -.|--|+.++.+ .|. +++.+|..
T Consensus 172 GGlP~g~~~kvlvllSG-vDS~vaa~ll~~----~G~-~v~~v~~~ 211 (307)
T 1vbk_A 172 GGLPIGTEGRMIGILHD-ELSALAIFLMMK----RGV-EVIPVYIG 211 (307)
T ss_dssp CSBCTTTTCEEEEECSS-HHHHHHHHHHHH----BTC-EEEEEEES
T ss_pred CCCCcCCCCcEEEEEeC-CcHHHHHHHHHh----CCC-eEEEEEEE
Confidence 44566666899999999 988766544433 455 49999976
No 56
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=52.04 E-value=29 Score=31.01 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=44.1
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCHHHHHHHH---HHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEe
Q 015548 100 LPFRNMCAQRRVEVEVKVIESDDVAKAIADE---VASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (405)
Q Consensus 100 ~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~---A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~ 176 (405)
++....++..|++++..+..-..-.+.+.++ +++.+++.||.|+-+-.++...+- -..+ +||+-|+
T Consensus 24 ~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA---------~~t~--~PVIgVP 92 (174)
T 3lp6_A 24 ADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVA---------AATP--LPVIGVP 92 (174)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHH---------HHCS--SCEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHH---------hccC--CCEEEee
Confidence 3344455667999988877555666666666 455789999998887665444332 2334 8898885
Q ss_pred C
Q 015548 177 K 177 (405)
Q Consensus 177 k 177 (405)
.
T Consensus 93 ~ 93 (174)
T 3lp6_A 93 V 93 (174)
T ss_dssp E
T ss_pred C
Confidence 4
No 57
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=50.00 E-value=34 Score=30.09 Aligned_cols=67 Identities=6% Similarity=-0.012 Sum_probs=44.6
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHh---C-CCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEE
Q 015548 100 LPFRNMCAQRRVEVEVKVIESDDVAKAIADEVAS---C-NINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (405)
Q Consensus 100 ~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e---~-~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV 175 (405)
++....++..|++++..+..-..-.+.+.+++++ . +++.||.|+-+-.++...+-| ..+ +||+-|
T Consensus 19 ~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~---------~t~--~PVIgV 87 (159)
T 3rg8_A 19 EKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDG---------FVK--GATIAC 87 (159)
T ss_dssp HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHH---------HSS--SCEEEC
T ss_pred HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHh---------ccC--CCEEEe
Confidence 3344455667999998887656677777777643 2 689999988876654443322 334 888888
Q ss_pred eC
Q 015548 176 EK 177 (405)
Q Consensus 176 ~k 177 (405)
+.
T Consensus 88 P~ 89 (159)
T 3rg8_A 88 PP 89 (159)
T ss_dssp CC
T ss_pred eC
Confidence 54
No 58
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=49.32 E-value=25 Score=32.96 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCC--CceEEEEeCCccccccCCC
Q 015548 123 VAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPS--FCTVYGVEKGKLSSVRPSD 187 (405)
Q Consensus 123 ~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~--~C~VlVV~kgk~~~~r~~~ 187 (405)
.++.|.+++++.++|+|++|....++..+-+ |..+|.++ ..|. +|.=+-+..|++...|+-.
T Consensus 104 ~A~~La~~i~~~~~dlVl~G~~s~d~d~~~v-~p~lA~~L--~~~~vt~v~~l~~~~~~~~v~R~i~ 167 (255)
T 1efv_B 104 VARVLAKLAEKEKVDLVLLGKQAIDDDCNQT-GQMTAGFL--DWPQGTFASQVTLEGDKLKVEREID 167 (255)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCCTTTCCCCH-HHHHHHHH--TCCEEEEEEEEEEETTEEEEEEEET
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccCCchhhH-HHHHHHHh--CCCcccceEEEEEcCCeEEEEEEcC
Confidence 4567888998889999999999876544434 33366655 3331 1222334456667777544
No 59
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=48.31 E-value=24 Score=32.94 Aligned_cols=62 Identities=19% Similarity=0.152 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCC--CceEEEEeCCccccccCCC
Q 015548 123 VAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPS--FCTVYGVEKGKLSSVRPSD 187 (405)
Q Consensus 123 ~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~--~C~VlVV~kgk~~~~r~~~ 187 (405)
.++.|.+++++.++|+|++|....++..+-+-+ .+|.++ ..|. +|.=+-+..|++...|+-.
T Consensus 101 ~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p-~lA~~L--~~~~vt~v~~l~~~~~~~~v~R~i~ 164 (252)
T 1efp_B 101 VAKILAAVARAEGTELIIAGKQAIDNDMNATGQ-MLAAIL--GWAQATFASKVEIEGAKAKVTREVD 164 (252)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHH-HHHHHH--TCEEEEEEEEEEECSSEEEEEEEET
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCchhhHHH-HHHHHh--CCCccccEEEEEEcCCeEEEEEEcC
Confidence 566888899888999999999987654443433 366655 2231 1222234455666667544
No 60
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=47.70 E-value=13 Score=30.17 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCC
Q 015548 97 RLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 97 ~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g 145 (405)
+.|.+|+++....|.++.++--. ....+.|-++++++++..+|+---.
T Consensus 13 etlrkfkdiikkngfkvrtvrsp-qelkdsieelvkkynativvvvvdd 60 (134)
T 2l69_A 13 ETLRKFKDIIKKNGFKVRTVRSP-QELKDSIEELVKKYNATIVVVVVDD 60 (134)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSH-HHHHHHHHHHTTCCCCEEEEEECSS
T ss_pred HHHHHHHHHHHhcCceEEEecCH-HHHHHHHHHHHHHhCCeEEEEEEcc
Confidence 45677788888899988776432 4567889999999999998885544
No 61
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=47.69 E-value=92 Score=29.58 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=27.9
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
.+|+|++.|...|--++.++.+.+ |. +++.+|+-..
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~~---g~-~v~av~vd~g 56 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKAI---GD-RLHAVFVNTG 56 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHHH---GG-GEEEEEEECS
T ss_pred CCEEEEEeChHHHHHHHHHHHHhh---CC-CEEEEEEcCC
Confidence 689999999999988887776643 23 3888998644
No 62
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=46.60 E-value=29 Score=27.76 Aligned_cols=50 Identities=20% Similarity=0.125 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHhCCCCEEEEccCC-----CCCcccccccchhhHHHhhhCCCCceEEEEe
Q 015548 122 DVAKAIADEVASCNINKLVIGAQS-----QGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (405)
Q Consensus 122 d~aeaIvd~A~e~~aDlIVmGs~g-----~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~ 176 (405)
...+.|.+++++++++.||+|-.- .+...+... ..+.++.+. + .||..+-
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~--~f~~~L~~~-~--lpV~~~D 92 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVL--PLVEALRAR-G--VEVELWD 92 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTH--HHHHHHHHT-T--CEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHH--HHHHHHhcC-C--CCEEEEC
Confidence 456788999999999999999432 222222222 134555554 3 7888773
No 63
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=46.07 E-value=9.5 Score=36.02 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHH
Q 015548 123 VAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRI 162 (405)
Q Consensus 123 ~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~V 162 (405)
.+..|.+++++.+.|+|++|....++..+-+ |..+|.++
T Consensus 100 ~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v-~p~lA~~L 138 (264)
T 1o97_C 100 VGRILTEVIKKEAPDMVFAGVQSSDQAYAST-GISVASYL 138 (264)
T ss_dssp HHHHHHHHHHHHCCSEEEEESCCTTTCCCCH-HHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCchhhH-HHHHHHHh
Confidence 4568888999989999999999876544434 33366665
No 64
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=41.55 E-value=68 Score=28.36 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=26.7
Q ss_pred CCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 13 ~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
..++|+|++.|...|-.++.++.+ .+. ++..+|+...
T Consensus 5 ~~~kv~v~~SGG~DS~~ll~ll~~----~g~-~v~~~~v~~~ 41 (203)
T 3k32_A 5 KLMDVHVLFSGGKDSSLSAVILKK----LGY-NPHLITINFG 41 (203)
T ss_dssp -CEEEEEECCCSHHHHHHHHHHHH----TTE-EEEEEEEECS
T ss_pred cCCeEEEEEECcHHHHHHHHHHHH----cCC-CeEEEEEeCC
Confidence 347899999999999888766543 233 4888887644
No 65
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=38.13 E-value=70 Score=32.90 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=27.5
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEec
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (405)
++|+||+.|...|--++.++.+.+ |. +++.+||..
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~~---G~-~v~av~vd~ 265 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKAI---GD-QLVCVLVDT 265 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHHH---GG-GEEEEEECC
T ss_pred CeEEEEEecCcCHHHHHHHHHHHh---CC-eEEEEEecc
Confidence 789999999999988887776643 23 399999854
No 66
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=37.91 E-value=1e+02 Score=31.86 Aligned_cols=131 Identities=8% Similarity=-0.023 Sum_probs=72.1
Q ss_pred eEEEeecCC--HHHHHHHHHHHHHhcc--CCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHH
Q 015548 16 SVAVAVKGN--RKSRYAVLWALEKFIP--EGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (405)
Q Consensus 16 kILVAVDgS--~~S~~AL~wAl~~a~~--~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~ 91 (405)
.|||=+-.+ -.-..||..|++.... .+.+ ++.|+|.++...-... .| .. -
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~p-v~~vfi~dp~~~~~~~--------~~---------~~--------r 83 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYF-VRPIFILDPGILDWMQ--------VG---------AN--------R 83 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEE-EEEEEEECTTGGGCTT--------SC---------HH--------H
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCCCe-EEEEEEECchhhcccC--------CC---------HH--------H
Confidence 335544433 2334577777765533 2333 8889999875210000 11 00 0
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCce
Q 015548 92 KWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCT 171 (405)
Q Consensus 92 ~~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~ 171 (405)
..-..+-|..+.+.+++.|+.... +. |++.+.|.+++++++++.|+.-.. .....+..... + ...++... |+
T Consensus 84 ~~Fl~~sL~~L~~~L~~~G~~L~v--~~-g~~~~~l~~l~~~~~~~~v~~~~~-~~p~~~~rd~~-v-~~~~~~~g--i~ 155 (543)
T 2wq7_A 84 WRFLQQTLEDLDNQLRKLNSRLFV--VR-GKPAEVFPRIFKSWRVEMLTFETD-IEPYSVTRDAA-V-QKLAKAEG--VR 155 (543)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEE--EE-SCHHHHHHHHHHHTTEEEEEEECC-CSHHHHHHHHH-H-HHHHHHHT--CE
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEE--Ee-CCHHHHHHHHHHHcCCCEEEEecC-cCHHHHHHHHH-H-HHHHHHcC--CE
Confidence 122344556666666677877533 44 899999999999999999988433 23333222221 2 22333333 77
Q ss_pred EEEEeCCcc
Q 015548 172 VYGVEKGKL 180 (405)
Q Consensus 172 VlVV~kgk~ 180 (405)
+..+...-+
T Consensus 156 ~~~~~~~~l 164 (543)
T 2wq7_A 156 VETHCSHTI 164 (543)
T ss_dssp EEEECCSSS
T ss_pred EEEecCCEE
Confidence 777765533
No 67
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=37.65 E-value=64 Score=31.09 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=62.7
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHH
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWK 94 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~ 94 (405)
-+|||+++.-......++.|...-..+| -+.+++|.+... .+. + .++
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~~~G--~ltv~~i~p~~~--------------~~~-----l------------~~q 67 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITYPKG--SVKLLGLAGNTD--------------KEN-----L------------LSQ 67 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHTTTC--EEEEEECC---C--------------TTC-----H------------HHH
T ss_pred CcEEEecCCchhhhhHHHHHHHhccCce--eEEEEEEccCCC--------------ccH-----H------------HHH
Confidence 3799999887788889999987665554 499999865531 000 0 011
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCC-----CCEEEEccCCCC
Q 015548 95 TDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCN-----INKLVIGAQSQG 147 (405)
Q Consensus 95 ~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~-----aDlIVmGs~g~s 147 (405)
+...+++++++||.+-..++...|+..++...++.++ ...|+||-....
T Consensus 68 ----l~~l~~~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~ 121 (294)
T 3g40_A 68 ----LPSISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENR 121 (294)
T ss_dssp ----HHHHHHHHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSG
T ss_pred ----HHHHHHHHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCCh
Confidence 2444667888999988888877899999999888765 467888776543
No 68
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=37.34 E-value=2.1e+02 Score=26.07 Aligned_cols=33 Identities=0% Similarity=-0.131 Sum_probs=24.3
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEe
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (405)
.+|+|++.|...|.-+|..+.+.. .. +.++|+-
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----~~-v~vv~id 78 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----PD-IPVILTD 78 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----TT-CEEEECC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----CC-CeEEEec
Confidence 589999999999987777665532 22 7777754
No 69
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=37.13 E-value=99 Score=25.61 Aligned_cols=40 Identities=3% Similarity=-0.023 Sum_probs=31.0
Q ss_pred HhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC
Q 015548 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ 146 (405)
Q Consensus 105 ~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~ 146 (405)
+++..|.++..+-. .-+.+.|++.+.++++|+|.+.+.-.
T Consensus 26 ~l~~~G~~Vi~lG~--~~p~e~~v~~a~~~~~d~v~lS~~~~ 65 (137)
T 1ccw_A 26 AFTNAGFNVVNIGV--LSPQELFIKAAIETKADAILVSSLYG 65 (137)
T ss_dssp HHHHTTCEEEEEEE--EECHHHHHHHHHHHTCSEEEEEECSS
T ss_pred HHHHCCCEEEECCC--CCCHHHHHHHHHhcCCCEEEEEecCc
Confidence 45567987765432 47899999999999999999977653
No 70
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=36.91 E-value=1.2e+02 Score=29.75 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=26.4
Q ss_pred CCCCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEec
Q 015548 10 PNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (405)
Q Consensus 10 ~~~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (405)
++.+..+|+|++.|...|--++.++.+ .+- +++.||+..
T Consensus 13 ~~~~~~kVvVa~SGGvDSsv~a~lL~~----~G~-~V~~v~~~~ 51 (380)
T 2der_A 13 MSETAKKVIVGMSGGVDSSVSAWLLQQ----QGY-QVEGLFMKN 51 (380)
T ss_dssp ----CCEEEEECCSCSTTHHHHHHHHT----TCC-EEEEEEEEC
T ss_pred CCCCCCEEEEEEEChHHHHHHHHHHHH----cCC-eEEEEEEEc
Confidence 344568999999999888877766543 244 488888763
No 71
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=34.21 E-value=1.2e+02 Score=28.76 Aligned_cols=73 Identities=15% Similarity=0.045 Sum_probs=40.7
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEeCC
Q 015548 99 LLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (405)
Q Consensus 99 L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kg 178 (405)
+......+++.|++++....+...-+..+++.+...++|+||+. -|-|-+.+ ++..+.+ .+..+|+.+|+-|
T Consensus 44 ~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~-GGDGTv~~------v~~~l~~-~~~~~pl~iIP~G 115 (337)
T 2qv7_A 44 LPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAA-GGDGTLNE------VVNGIAE-KPNRPKLGVIPMG 115 (337)
T ss_dssp HHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEE-ECHHHHHH------HHHHHTT-CSSCCEEEEEECS
T ss_pred HHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEE-cCchHHHH------HHHHHHh-CCCCCcEEEecCC
Confidence 34444556667877766654433355566655555678877663 23232222 3444432 2334789999888
Q ss_pred c
Q 015548 179 K 179 (405)
Q Consensus 179 k 179 (405)
.
T Consensus 116 T 116 (337)
T 2qv7_A 116 T 116 (337)
T ss_dssp S
T ss_pred c
Confidence 3
No 72
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=33.37 E-value=1.5e+02 Score=30.00 Aligned_cols=78 Identities=9% Similarity=0.032 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEE
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV 175 (405)
.+-|..+.+.+++.|+.... +. |++.+.|.+++++++++.|+.- +......+..... |...+ +... |++..+
T Consensus 64 ~~sL~~L~~~L~~~G~~L~v--~~-g~~~~~l~~l~~~~~~~~V~~~-~~~~~~~~~rd~~-v~~~l-~~~g--i~~~~~ 135 (489)
T 1np7_A 64 QQSVQNLAESLQKVGNKLLV--TT-GLPEQVIPQIAKQINAKTIYYH-REVTQEELDVERN-LVKQL-TILG--IEAKGY 135 (489)
T ss_dssp HHHHHHHHHHHHHTTCCEEE--EE-SCHHHHHHHHHHHTTEEEEEEE-CCCSHHHHHHHHH-HHHHH-HHHT--CEEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEE--EE-CCHHHHHHHHHHHcCCCEEEEe-cccCHHHHHHHHH-HHHHH-HhcC--CeEEEe
Confidence 44556666666777877543 44 8999999999999999998874 3333333323221 33333 2222 777777
Q ss_pred eCCccc
Q 015548 176 EKGKLS 181 (405)
Q Consensus 176 ~kgk~~ 181 (405)
....+.
T Consensus 136 ~~~~l~ 141 (489)
T 1np7_A 136 WGSTLC 141 (489)
T ss_dssp CCSSSS
T ss_pred cCCeee
Confidence 555443
No 73
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=32.70 E-value=80 Score=27.07 Aligned_cols=40 Identities=8% Similarity=0.046 Sum_probs=29.7
Q ss_pred HhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC
Q 015548 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ 146 (405)
Q Consensus 105 ~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~ 146 (405)
+++..|.++.. +...-+.+.|++.+.++++|+|.+.+...
T Consensus 41 ~l~~~G~eVi~--lG~~~p~e~lv~aa~~~~~diV~lS~~~~ 80 (161)
T 2yxb_A 41 ALRDAGFEVVY--TGLRQTPEQVAMAAVQEDVDVIGVSILNG 80 (161)
T ss_dssp HHHHTTCEEEC--CCSBCCHHHHHHHHHHTTCSEEEEEESSS
T ss_pred HHHHCCCEEEE--CCCCCCHHHHHHHHHhcCCCEEEEEeech
Confidence 35567876544 33346889999999999999999976643
No 74
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=32.32 E-value=69 Score=33.21 Aligned_cols=45 Identities=7% Similarity=0.079 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEcc
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGA 143 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs 143 (405)
.+-|....+-+++.|+.. +++. |++.+.|.+++++++|+.|+.-.
T Consensus 67 ~~sL~~L~~~L~~~G~~L--~v~~-G~~~~vl~~L~~~~~~~~V~~n~ 111 (537)
T 3fy4_A 67 LESLKDLDSSLKKLGSRL--LVFK-GEPGEVLVRCLQEWKVKRLCFEY 111 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC--EEEE-SCHHHHHHHHHTTSCEEEEEECC
T ss_pred HHHHHHHHHHHHHcCCce--EEEE-CCHHHHHHHHHHHcCCCEEEEec
Confidence 344555555666678764 3344 89999999999999999998844
No 75
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=32.17 E-value=1.6e+02 Score=30.19 Aligned_cols=77 Identities=5% Similarity=-0.021 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEE
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV 175 (405)
.+-|..+.+.+++.|+.... +. |++.+.|.+++++++++.|+.-. ......+..... |...+ +...-.|++..+
T Consensus 99 ~~sL~~L~~~L~~~G~~L~v--~~-g~~~~~l~~l~~~~~~~~V~~~~-~~~p~~~~rd~~-v~~~l-~~~gv~i~~~~~ 172 (525)
T 2j4d_A 99 MECLVDLRKNLMKRGLNLLI--RS-GKPEEILPSLAKDFGARTVFAHK-ETCSEEVDVERL-VNQGL-KRVGNSTKLELI 172 (525)
T ss_dssp HHHHHHHHHHHHHTTCCCEE--EE-SCHHHHHHHHHHHHTCSEEEEEC-CCSHHHHHHHHH-HHHHH-HTTCSSCEEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEE--Ee-CCHHHHHHHHHHHcCCCEEEEec-cCCHHHHHHHHH-HHHHH-HhcCCceEEEEe
Confidence 44556666666677877533 44 89999999999999999998843 333333333221 33333 221101577666
Q ss_pred eCC
Q 015548 176 EKG 178 (405)
Q Consensus 176 ~kg 178 (405)
...
T Consensus 173 ~~~ 175 (525)
T 2j4d_A 173 WGS 175 (525)
T ss_dssp CCS
T ss_pred cCC
Confidence 555
No 76
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=31.88 E-value=75 Score=28.08 Aligned_cols=50 Identities=14% Similarity=-0.014 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCC
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQG 147 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s 147 (405)
+.+++.+.+.+++.|.+++.+-+..++-.+.+.+...+ +|.||+++.-..
T Consensus 33 ~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~--AD~iV~~~P~y~ 82 (204)
T 2amj_A 33 DTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLW--ADVVIWQMPGWW 82 (204)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHH--CSEEEEEEECBT
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHh--CCEEEEECCccc
Confidence 34555555556666888887777555555666666666 799999998753
No 77
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=31.77 E-value=1.6e+02 Score=30.13 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=28.2
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (405)
++|+|++.|...|--++.++.+.+ |. +++.+|+...
T Consensus 228 ~~vvvalSGGvDSsv~a~ll~~a~---G~-~v~av~v~~g 263 (525)
T 1gpm_A 228 DKVILGLSGGVDSSVTAMLLHRAI---GK-NLTCVFVDNG 263 (525)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH---GG-GEEEEEEECS
T ss_pred cceEEEecCCCCHHHHHHHHHHHh---CC-CEEEEEEeCC
Confidence 689999999999998888877643 23 3888898643
No 78
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=30.85 E-value=1.8e+02 Score=29.24 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=27.2
Q ss_pred CCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEe
Q 015548 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (405)
Q Consensus 13 ~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (405)
...+|+||+.|.-.|--++.|+.+. |. +++-+++.
T Consensus 13 ~~~KVVVA~SGGlDSSv~a~~Lke~----G~-eViavt~d 47 (421)
T 1vl2_A 13 MKEKVVLAYSGGLDTSVILKWLCEK----GF-DVIAYVAN 47 (421)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHHT----TC-EEEEEEEE
T ss_pred ccCCEEEEeCCcHHHHHHHHHHHHC----CC-eEEEEEEE
Confidence 4578999999999888899998662 34 48878865
No 79
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=30.51 E-value=1.6e+02 Score=27.62 Aligned_cols=70 Identities=11% Similarity=0.044 Sum_probs=40.1
Q ss_pred HHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEeCCc
Q 015548 101 PFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGK 179 (405)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kgk 179 (405)
.....+++.|++++....+...-+..+++.+.+ ++|.||+. -|-|-+.+ +...+... +..+++.+|+-|.
T Consensus 30 ~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~-GGDGTl~~------v~~~l~~~-~~~~~l~iiP~Gt 99 (304)
T 3s40_A 30 KIVPPLAAAFPDLHILHTKEQGDATKYCQEFAS-KVDLIIVF-GGDGTVFE------CTNGLAPL-EIRPTLAIIPGGT 99 (304)
T ss_dssp HHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEE-ECHHHHHH------HHHHHTTC-SSCCEEEEEECSS
T ss_pred HHHHHHHHcCCeEEEEEccCcchHHHHHHHhhc-CCCEEEEE-ccchHHHH------HHHHHhhC-CCCCcEEEecCCc
Confidence 344455566888877766655566667766544 78877663 23332222 33333332 1347898998873
No 80
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=30.39 E-value=1.2e+02 Score=27.81 Aligned_cols=65 Identities=12% Similarity=-0.100 Sum_probs=40.6
Q ss_pred HhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEE
Q 015548 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (405)
Q Consensus 105 ~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV 175 (405)
++..+|.++..+-. +-|.+.|++.++++++|+|.+.+....... .+. .+...+-+..+. |+|+|-
T Consensus 146 ~L~~~G~~Vi~LG~--~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~-~~~--~~i~~l~~~~~~-~~v~vG 210 (258)
T 2i2x_B 146 LLRANGYNVVDLGR--DVPAEEVLAAVQKEKPIMLTGTALMTTTMY-AFK--EVNDMLLENGIK-IPFACG 210 (258)
T ss_dssp HHHHTTCEEEEEEE--ECCSHHHHHHHHHHCCSEEEEECCCTTTTT-HHH--HHHHHHHTTTCC-CCEEEE
T ss_pred HHHHCCCEEEECCC--CCCHHHHHHHHHHcCCCEEEEEeeccCCHH-HHH--HHHHHHHhcCCC-CcEEEE
Confidence 35567887755433 468999999999999999999775443322 121 134444444343 666654
No 81
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=30.03 E-value=22 Score=30.55 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHhCCCCEEEEccCC-----CCCcccccccchhhHHHhhhCCCCceEEEEeC
Q 015548 121 DDVAKAIADEVASCNINKLVIGAQS-----QGIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (405)
Q Consensus 121 Gd~aeaIvd~A~e~~aDlIVmGs~g-----~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~k 177 (405)
....+.|.+++++++++.||||-.- .+.-.....+ ++..+.+..+ +||+.|..
T Consensus 41 ~~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~--f~~~L~~~~~--lpV~~vDE 98 (150)
T 1vhx_A 41 DYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQT--FAKVLETTYN--VPVVLWDE 98 (150)
T ss_dssp BCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHH--HHHHHHHHHC--SCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHH--HHHHHHHhhC--CCEEEecC
Confidence 4578999999999999999999441 1111111122 3444444333 78888743
No 82
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=29.54 E-value=37 Score=25.09 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHhhhHH
Q 015548 327 VNFELEKLRIELRHVRGMYA 346 (405)
Q Consensus 327 ~~~E~ekLrlELrh~~~my~ 346 (405)
+=.|++|||.|+..+-.|.-
T Consensus 9 vl~ELeRlkveiQRLE~ml~ 28 (67)
T 1wmi_B 9 VLKELERLKVEIQRLEAMLM 28 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 66799999999998877753
No 83
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=28.77 E-value=1.6e+02 Score=23.01 Aligned_cols=52 Identities=15% Similarity=0.044 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHh-CCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEEeCC
Q 015548 121 DDVAKAIADEVAS-CNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (405)
Q Consensus 121 Gd~aeaIvd~A~e-~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kg 178 (405)
.+..+++..+.+. ..+|+||+.-.-.+ .-|-.+...+.+..| .++|+++...
T Consensus 52 ~~~~~~~~~~~~~~~~~dlvi~D~~l~~-----~~g~~~~~~l~~~~~-~~~ii~lt~~ 104 (146)
T 4dad_A 52 VGRAAQIVQRTDGLDAFDILMIDGAALD-----TAELAAIEKLSRLHP-GLTCLLVTTD 104 (146)
T ss_dssp CCCHHHHTTCHHHHTTCSEEEEECTTCC-----HHHHHHHHHHHHHCT-TCEEEEEESC
T ss_pred CCHHHHHHHHHhcCCCCCEEEEeCCCCC-----ccHHHHHHHHHHhCC-CCcEEEEeCC
Confidence 5677788777777 88999999876432 223335555555544 5888888653
No 84
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=28.39 E-value=39 Score=20.44 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=9.9
Q ss_pred hhhhHHHHHHHHHHHHHHh
Q 015548 324 QVDVNFELEKLRIELRHVR 342 (405)
Q Consensus 324 q~~~~~E~ekLrlELrh~~ 342 (405)
.|.+-.|+|.|.-.||.+.
T Consensus 3 adelykeledlqerlrklr 21 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555443
No 85
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=27.75 E-value=21 Score=32.50 Aligned_cols=125 Identities=12% Similarity=0.033 Sum_probs=70.5
Q ss_pred CCeEEEeecC-----CHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHH
Q 015548 14 ALSVAVAVKG-----NRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYK 88 (405)
Q Consensus 14 ~~kILVAVDg-----S~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~ 88 (405)
++.|+|-++- .+.+..+|..|.+++...+.. +++|-+-+.. ..
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~-v~av~~G~~~---------------~~---------------- 50 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQ-LEAVVAGTGL---------------KE---------------- 50 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCC-EEEEEEESCC---------------TT----------------
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCe-EEEEEECCCH---------------HH----------------
Confidence 3567777763 478999999998876544554 7766543321 00
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcEEEEEEec--------CCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhH
Q 015548 89 QEEKWKTDRLLLPFRNMCAQRRVEVEVKVIES--------DDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSS 160 (405)
Q Consensus 89 ~e~~~~~~~~L~~~~~~~~~~gV~ve~vvle~--------Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~ 160 (405)
.+++ +...|+.-.. ++++ ...++.|.++++++++|+|++|+...+ +-+.+ .++.
T Consensus 51 -----~~~~--------~~~~Gad~v~-~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~~G---~~lap-rlAa 112 (217)
T 3ih5_A 51 -----IEKQ--------ILPYGVDKLH-VFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATVIG---RDLGP-RVSS 112 (217)
T ss_dssp -----THHH--------HGGGTCSEEE-EEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSHHH---HHHHH-HHHH
T ss_pred -----HHHH--------HHhcCCCEEE-EecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcch---hhHHH-HHHH
Confidence 0011 1123554222 2331 125778999999999999999987643 33333 3655
Q ss_pred HHhhhCCCCceEEEEeCC-----------ccccccCCCC
Q 015548 161 RISICVPSFCTVYGVEKG-----------KLSSVRPSDL 188 (405)
Q Consensus 161 ~Vvk~ap~~C~VlVV~kg-----------k~~~~r~~~~ 188 (405)
++--..-..|.=+-+..+ ++..+|+.--
T Consensus 113 ~L~~~~~sdv~~l~~~~~~~~~~~~~~~~~l~~~Rp~~g 151 (217)
T 3ih5_A 113 ALTSGLTADCTSLEIGDHEDKKEGKVYKNLLYQIRPAFG 151 (217)
T ss_dssp HTTCCCBCSCSEEEEEEEEETTTTEEEEEEEEEEEESSS
T ss_pred HhCCCccceEEEEEecCCccccccccccccEEEEEECCC
Confidence 542221133544544332 3677776543
No 86
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=26.91 E-value=1.1e+02 Score=31.73 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhc---CCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCc
Q 015548 96 DRLLLPFRNMCAQR---RVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIF 149 (405)
Q Consensus 96 ~~~L~~~~~~~~~~---gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l 149 (405)
.+-|....+-+++. |+.. ++.. |++.+.|.+++++++|+.|+. .+.....
T Consensus 60 ~~sL~~L~~~L~~~~~~G~~L--~v~~-G~~~~vl~~L~~~~~a~~V~~-n~~~~~~ 112 (538)
T 3tvs_A 60 LDSLQDIDDQLQAATDGRGRL--LVFE-GEPAYIFRRLHEQVRLHRICI-EQDCEPI 112 (538)
T ss_dssp HHHHHHHHHHGGGSCSSSSCC--EEEE-SCHHHHHHHHHHHHCEEEECE-ECCCCGG
T ss_pred HHHHHHHHHHHHHhhcCCCeE--EEEe-CCHHHHHHHHHHHcCCCEEEE-ccCCCHH
Confidence 44555666666667 7764 3344 999999999999999999986 4444443
No 87
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=26.73 E-value=1e+02 Score=31.26 Aligned_cols=68 Identities=10% Similarity=0.042 Sum_probs=41.4
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHH---HhCCC-CEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEE
Q 015548 99 LLPFRNMCAQRRVEVEVKVIESDDVAKAIADEV---ASCNI-NKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYG 174 (405)
Q Consensus 99 L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A---~e~~a-DlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlV 174 (405)
+++....|+..|++++..+..-+...+.+.+++ ++.++ +.||.|+-+-+++...+-| .++ +||+-
T Consensus 281 ~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgvva~---------~t~--~PVIg 349 (425)
T 2h31_A 281 CEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMSG---------NTA--YPVIS 349 (425)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHHHHH---------HCS--SCEEE
T ss_pred HHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhHHhc---------cCC--CCEEE
Confidence 444555666678888887765445555555544 45677 5777777665554433322 334 88888
Q ss_pred EeC
Q 015548 175 VEK 177 (405)
Q Consensus 175 V~k 177 (405)
|+.
T Consensus 350 vP~ 352 (425)
T 2h31_A 350 CPP 352 (425)
T ss_dssp CCC
T ss_pred eeC
Confidence 865
No 88
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=25.13 E-value=45 Score=27.77 Aligned_cols=29 Identities=24% Similarity=0.146 Sum_probs=21.0
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHhhhHH
Q 015548 318 DSSSESQVDVNFELEKLRIELRHVRGMYA 346 (405)
Q Consensus 318 ~~~s~~q~~~~~E~ekLrlELrh~~~my~ 346 (405)
..++-..|-+.-||||||.|--++.++|+
T Consensus 28 ~~~~~~sDPL~~ELeRLr~~~d~~~K~HE 56 (115)
T 3vem_A 28 IPFPVFNDPFLHELEKLRRESENSKKTFE 56 (115)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccchHHHHHHHHHHHHHHHHHHHH
Confidence 33566778899999999999888888875
No 89
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=24.30 E-value=1.4e+02 Score=24.43 Aligned_cols=45 Identities=2% Similarity=0.099 Sum_probs=31.0
Q ss_pred HHHHHhhhcCCcEEEEEEecC--------CHHHHHHHHHHhCCCCEEEEccCC
Q 015548 101 PFRNMCAQRRVEVEVKVIESD--------DVAKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~G--------d~aeaIvd~A~e~~aDlIVmGs~g 145 (405)
..+++|.++|..+..+..+.| .--..+++.+++..+|.||+-.-.
T Consensus 29 ~l~~~a~~~g~~~~~~~~D~g~Sg~~~~Rp~l~~ll~~~~~g~~d~lvv~~ld 81 (138)
T 3bvp_A 29 RLTKYAEAMGWQVSDTYTDAGFSGAKLERPAMQRLINDIENKAFDTVLVYKLD 81 (138)
T ss_dssp HHHHHHHHTTCEEEEEEEEETCCSSSSCCHHHHHHHHGGGGTSCSEEEESSHH
T ss_pred HHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 344567788988766555433 234677888888899999996644
No 90
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=23.44 E-value=1.4e+02 Score=25.14 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=24.7
Q ss_pred hhhcCCcEEEEEEecC-CHHHHHHHHHHhCCCCEEEEccCCCCC
Q 015548 106 CAQRRVEVEVKVIESD-DVAKAIADEVASCNINKLVIGAQSQGI 148 (405)
Q Consensus 106 ~~~~gV~ve~vvle~G-d~aeaIvd~A~e~~aDlIVmGs~g~s~ 148 (405)
+...|++++..-+... ++.+ +.+.+. .+|.||+|+.-.++
T Consensus 29 l~~~g~~v~~~~~~~~~~~~~-~~~~~~--~~d~ii~Gspty~g 69 (159)
T 3fni_A 29 ITKTGVGVDVVDLGAAVDLQE-LRELVG--RCTGLVIGMSPAAS 69 (159)
T ss_dssp HHHTTCEEEEEESSSCCCHHH-HHHHHH--TEEEEEEECCBTTS
T ss_pred HHHCCCeEEEEECcCcCCHHH-HHHHHH--hCCEEEEEcCcCCC
Confidence 3446887766555433 4444 333333 36999999998765
No 91
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=23.08 E-value=54 Score=27.82 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHhCCCCEEEEccC
Q 015548 122 DVAKAIADEVASCNINKLVIGAQ 144 (405)
Q Consensus 122 d~aeaIvd~A~e~~aDlIVmGs~ 144 (405)
...+.|.+++++++++.||||-.
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP 62 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLP 62 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCEEEEecc
Confidence 35789999999999999999943
No 92
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=22.83 E-value=4e+02 Score=24.59 Aligned_cols=76 Identities=13% Similarity=0.109 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhC-CCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEE
Q 015548 97 RLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASC-NINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (405)
Q Consensus 97 ~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~-~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV 175 (405)
+-|..+.+.|.+.|..+-.. -.+..+ ++.|.+. ++|+|-+=.++...|.--+ ..+..+++..|. .+.+|
T Consensus 137 ~~l~~l~~~a~~lGl~~lvE---v~~~eE--~~~A~~l~g~~iIGinnr~l~t~~~d~---~~~~~l~~~ip~--~~~vI 206 (251)
T 1i4n_A 137 EQIKEIYEAAEELGMDSLVE---VHSRED--LEKVFSVIRPKIIGINTRDLDTFEIKK---NVLWELLPLVPD--DTVVV 206 (251)
T ss_dssp HHHHHHHHHHHTTTCEEEEE---ECSHHH--HHHHHTTCCCSEEEEECBCTTTCCBCT---THHHHHGGGSCT--TSEEE
T ss_pred HHHHHHHHHHHHcCCeEEEE---eCCHHH--HHHHHhcCCCCEEEEeCcccccCCCCH---HHHHHHHHhCCC--CCEEE
Confidence 34566666777777664332 256777 5667778 9999877777665543322 256788888874 46688
Q ss_pred eCCcccc
Q 015548 176 EKGKLSS 182 (405)
Q Consensus 176 ~kgk~~~ 182 (405)
+.|++.+
T Consensus 207 aEsGI~t 213 (251)
T 1i4n_A 207 AESGIKD 213 (251)
T ss_dssp EESCCCC
T ss_pred EeCCCCC
Confidence 8887754
No 93
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=22.78 E-value=4.2e+02 Score=23.83 Aligned_cols=87 Identities=11% Similarity=0.031 Sum_probs=53.1
Q ss_pred CCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHH
Q 015548 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (405)
Q Consensus 12 ~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~ 91 (405)
.+..||+|=+.|+.+...++-.++. ...-. .-++-|+.... ...
T Consensus 6 ~~~~ri~vl~SG~gsnl~all~~~~---~~~~~-~~I~~Vis~~~--------------~a~------------------ 49 (215)
T 3kcq_A 6 KKELRVGVLISGRGSNLEALAKAFS---TEESS-VVISCVISNNA--------------EAR------------------ 49 (215)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHTC---CC-CS-EEEEEEEESCT--------------TCT------------------
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHH---cCCCC-cEEEEEEeCCc--------------chH------------------
Confidence 4567899999999888777766642 22112 45555665421 000
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCC
Q 015548 92 KWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 92 ~~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g 145 (405)
. .+.|++.||++...-.. .-..+.+++..+++++|+||+-.-+
T Consensus 50 ---~-------l~~A~~~gIp~~~~~~~-~~~~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 50 ---G-------LLIAQSYGIPTFVVKRK-PLDIEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp ---H-------HHHHHHTTCCEEECCBT-TBCHHHHHHHHHHTTCSEEEESSCC
T ss_pred ---H-------HHHHHHcCCCEEEeCcc-cCChHHHHHHHHHhCCCEEEEeCCc
Confidence 0 13466789886543111 1123789999999999999996554
No 94
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=22.45 E-value=1.8e+02 Score=27.56 Aligned_cols=71 Identities=13% Similarity=0.180 Sum_probs=37.4
Q ss_pred HHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhC-CCCceEEEEeCCcc
Q 015548 103 RNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICV-PSFCTVYGVEKGKL 180 (405)
Q Consensus 103 ~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~a-p~~C~VlVV~kgk~ 180 (405)
.+.+.+.|+++.....+...-+..+++.+...++|+||+. -|-|-+.+ ++..+.+.. ...+|+.+|+-|..
T Consensus 50 ~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~-GGDGTl~~------v~~~l~~~~~~~~~plgiiP~Gt~ 121 (332)
T 2bon_A 50 IMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAG-GGDGTINE------VSTALIQCEGDDIPALGILPLGTA 121 (332)
T ss_dssp HHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEE-ESHHHHHH------HHHHHHHCCSSCCCEEEEEECSSS
T ss_pred HHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEE-ccchHHHH------HHHHHhhcccCCCCeEEEecCcCH
Confidence 3445667888766654423334444444444468877652 23232222 445555321 23478899988853
No 95
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=21.52 E-value=1.8e+02 Score=28.75 Aligned_cols=75 Identities=9% Similarity=-0.012 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEE
Q 015548 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (405)
Q Consensus 96 ~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV 175 (405)
.+-|..+.+.+++.|+.... +. |++.+.|.+++++++++.|+.-. ......+... ..|.+.. .|++..+
T Consensus 51 ~~sL~~l~~~L~~~g~~l~~--~~-g~~~~~l~~l~~~~~~~~v~~~~-~~~~~~~~rd-----~~v~~~l--~i~~~~~ 119 (420)
T 2j07_A 51 LENVRALREAYRARGGALWV--LE-GLPWEKVPEAARRLKAKAVYALT-SHTPYGRYRD-----GRVREAL--PVPLHLL 119 (420)
T ss_dssp HHHHHHHHHHHHHTTCCEEE--EE-SCHHHHHHHHHHHTTCSEEEEEC-CCSHHHHHHH-----HHHHHHC--SSCEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEE--Ee-CCHHHHHHHHHHHcCCCEEEEec-ccChhHHHHH-----HHHHHHc--CCeEEEe
Confidence 44556666667777887533 44 89999999999999999998833 3333322222 2232222 3777777
Q ss_pred eCCccc
Q 015548 176 EKGKLS 181 (405)
Q Consensus 176 ~kgk~~ 181 (405)
....++
T Consensus 120 ~~~~l~ 125 (420)
T 2j07_A 120 PAPHLL 125 (420)
T ss_dssp CCCCSS
T ss_pred CCCEEE
Confidence 555543
No 96
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.39 E-value=69 Score=22.88 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhhhccccch
Q 015548 330 ELEKLRIELRHVRGMYAIAQNEANDASRKV 359 (405)
Q Consensus 330 E~ekLrlELrh~~~my~~aq~E~~~As~k~ 359 (405)
|+|+||.|+..++..|+.-..+--.-++|+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666665555544444443
No 97
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=21.25 E-value=1.9e+02 Score=27.02 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=38.0
Q ss_pred cCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCcccccccchhhHHHhhhCCCCceEEEEeCCc
Q 015548 109 RRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRISICVPSFCTVYGVEKGK 179 (405)
Q Consensus 109 ~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~---s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV~kgk 179 (405)
.||++..+ . +...-.++ .++|++++|+.+- |++..+ .|+..-..+.++.. .|+||+.+-.
T Consensus 159 ~gI~vtli--~-dsa~~~~m-----~~vd~vivGAd~i~~nG~v~nk-iGt~~iA~~A~~~~--vp~~V~a~~~ 221 (276)
T 1vb5_A 159 SGIEFEVI--T-DAQMGLFC-----REASIAIVGADMITKDGYVVNK-AGTYLLALACHENA--IPFYVAAETY 221 (276)
T ss_dssp TTCCEEEE--C-GGGHHHHH-----TTCSEEEECCSEECTTSCEEEE-TTHHHHHHHHHHTT--CCEEEECCGG
T ss_pred CCCCEEEE--c-HHHHHHHH-----ccCCEEEEcccEEecCCCEeec-hhHHHHHHHHHHcC--CCEEEecccc
Confidence 58887654 3 23333333 2699999999973 456666 68643344455543 8999998753
No 98
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=21.08 E-value=1.9e+02 Score=24.15 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=24.5
Q ss_pred hhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCC
Q 015548 106 CAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGI 148 (405)
Q Consensus 106 ~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~ 148 (405)
+...|++++..-+...++.+ +...+.+ +|.||+|+.-.++
T Consensus 25 l~~~g~~v~~~~~~~~~~~~-~~~~~~~--~d~ii~Gspty~g 64 (161)
T 3hly_A 25 LVKTGVAVEMVDLRAVDPQE-LIEAVSS--ARGIVLGTPPSQP 64 (161)
T ss_dssp HHHTTCCEEEEETTTCCHHH-HHHHHHH--CSEEEEECCBSSC
T ss_pred HHhCCCeEEEEECCCCCHHH-HHHHHHh--CCEEEEEcCCcCC
Confidence 33468877666554334443 4333333 6999999998754
No 99
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=20.93 E-value=2.1e+02 Score=26.38 Aligned_cols=95 Identities=16% Similarity=0.249 Sum_probs=51.3
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHH
Q 015548 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWK 94 (405)
Q Consensus 15 ~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~ 94 (405)
.+++|++.|...|-.|+.++.+ .|- +++-|+..-+... ..+. .....
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~----~G~-eV~~L~~~~~~~~-------------~s~~-~h~~~-------------- 51 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIK----NRF-SVKFLVTMVSENE-------------ESYM-YHTIN-------------- 51 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHH----TTC-EEEEEEEEECC----------------------CCS--------------
T ss_pred CEEEEEecCcHHHHHHHHHHHH----cCC-eEEEEEEEcCCCC-------------Cccc-cCCcc--------------
Confidence 5899999999999999887765 333 3655544322210 0000 00000
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEec--CCHHHHHHHHHHhCCCCEEEEccCCC
Q 015548 95 TDRLLLPFRNMCAQRRVEVEVKVIES--DDVAKAIADEVASCNINKLVIGAQSQ 146 (405)
Q Consensus 95 ~~~~L~~~~~~~~~~gV~ve~vvle~--Gd~aeaIvd~A~e~~aDlIVmGs~g~ 146 (405)
++..+..|+.-||+...+-+.+ ++-.+.+.+..++.+++.+|.|.--.
T Consensus 52 ----~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi~s 101 (237)
T 3rjz_A 52 ----ANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGALAS 101 (237)
T ss_dssp ----SSHHHHHHHHHTCCEEEEEC------CHHHHHHHHTTSCCSEEECC---C
T ss_pred ----HHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCcch
Confidence 0112224555688766554441 23456677777888999999998753
No 100
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=20.51 E-value=5.3e+02 Score=24.15 Aligned_cols=87 Identities=6% Similarity=0.058 Sum_probs=53.6
Q ss_pred CCCCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHH
Q 015548 11 NSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQE 90 (405)
Q Consensus 11 ~~~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e 90 (405)
.....||+|-+.|+-++..+|-++.+.- .. . .-++-|+.... +
T Consensus 87 ~~~~~ri~vl~Sg~g~~l~~ll~~~~~g-~l-~--~~i~~Visn~~--------------~------------------- 129 (286)
T 3n0v_A 87 PNHRPKVVIMVSKADHCLNDLLYRQRIG-QL-G--MDVVAVVSNHP--------------D------------------- 129 (286)
T ss_dssp TTCCCEEEEEESSCCHHHHHHHHHHHTT-SS-C--CEEEEEEESSS--------------T-------------------
T ss_pred CCCCcEEEEEEeCCCCCHHHHHHHHHCC-CC-C--cEEEEEEeCcH--------------H-------------------
Confidence 3456789999999999999998886521 11 2 23334443320 0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEEEEecCCH---HHHHHHHHHhCCCCEEEEccCC
Q 015548 91 EKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDV---AKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 91 ~~~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~---aeaIvd~A~e~~aDlIVmGs~g 145 (405)
+. .+|++.||++..+-....+- .+.+++..+++++|+||+-.-+
T Consensus 130 ----~~-------~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 130 ----LE-------PLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp ----TH-------HHHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ----HH-------HHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 01 12556798875432111221 3478999999999999996544
No 101
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=20.26 E-value=1.7e+02 Score=25.69 Aligned_cols=39 Identities=13% Similarity=0.028 Sum_probs=29.4
Q ss_pred HhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCC
Q 015548 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 105 ~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g 145 (405)
+++.+|.++.. +..+-|.+.|++.++++++|+|.+...-
T Consensus 111 ~l~~~G~~v~~--LG~~vp~~~l~~~~~~~~~d~v~lS~~~ 149 (210)
T 1y80_A 111 MLESGGFTVYN--LGVDIEPGKFVEAVKKYQPDIVGMSALL 149 (210)
T ss_dssp HHHHTTCEEEE--CCSSBCHHHHHHHHHHHCCSEEEEECCS
T ss_pred HHHHCCCEEEE--CCCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 34467876544 3446789999999999999999987653
No 102
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=20.05 E-value=1.2e+02 Score=28.58 Aligned_cols=51 Identities=8% Similarity=0.141 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEe---------cCCHHHHHHHHHHhCCCCEEEEccCC
Q 015548 95 TDRLLLPFRNMCAQRRVEVEVKVIE---------SDDVAKAIADEVASCNINKLVIGAQS 145 (405)
Q Consensus 95 ~~~~L~~~~~~~~~~gV~ve~vvle---------~Gd~aeaIvd~A~e~~aDlIVmGs~g 145 (405)
...-+-....+|+..|.++..+--+ +...+++|++.+...+.+++++|-.+
T Consensus 87 v~YQiGAL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~g 146 (255)
T 1v6t_A 87 ILYQVGALYAFAKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSN 146 (255)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEETT
T ss_pred HHHHHHHHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 3444566677899999887665322 35689999999999999999999655
Done!