Query 015549
Match_columns 405
No_of_seqs 186 out of 550
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 07:21:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1327 Copine [Signal transdu 100.0 5.5E-77 1.2E-81 615.6 23.6 255 69-339 254-524 (529)
2 cd01459 vWA_copine_like VWA Co 100.0 1.1E-70 2.5E-75 530.0 20.5 223 82-329 19-254 (254)
3 PF07002 Copine: Copine; Inte 100.0 1.5E-47 3.2E-52 342.6 14.9 137 125-273 1-146 (146)
4 PF10138 vWA-TerF-like: vWA fo 100.0 5.9E-35 1.3E-39 273.3 17.5 197 101-338 2-200 (200)
5 cd01457 vWA_ORF176_type VWA OR 99.8 7.4E-20 1.6E-24 168.1 12.3 169 102-306 4-187 (199)
6 smart00327 VWA von Willebrand 98.9 1.6E-08 3.4E-13 87.6 11.2 150 101-289 2-160 (177)
7 cd01461 vWA_interalpha_trypsin 98.8 3.8E-08 8.2E-13 86.2 11.9 147 101-285 3-150 (171)
8 cd01463 vWA_VGCC_like VWA Volt 98.7 1E-07 2.2E-12 86.9 11.3 147 101-284 14-176 (190)
9 cd01471 vWA_micronemal_protein 98.7 1.7E-07 3.7E-12 84.6 11.9 169 101-304 1-179 (186)
10 cd00198 vWFA Von Willebrand fa 98.7 3.5E-07 7.5E-12 76.5 12.5 146 102-285 2-153 (161)
11 cd01464 vWA_subfamily VWA subf 98.6 1.6E-07 3.5E-12 84.4 9.6 144 100-285 3-159 (176)
12 cd01450 vWFA_subfamily_ECM Von 98.5 5.6E-07 1.2E-11 77.1 9.8 147 102-285 2-153 (161)
13 cd01465 vWA_subgroup VWA subgr 98.5 2E-06 4.4E-11 75.4 12.4 147 101-284 1-150 (170)
14 cd01466 vWA_C3HC4_type VWA C3H 98.5 9E-07 2E-11 78.5 10.1 140 102-284 2-144 (155)
15 cd01454 vWA_norD_type norD typ 98.5 3.4E-06 7.3E-11 75.7 13.3 151 102-277 2-155 (174)
16 PF13519 VWA_2: von Willebrand 98.5 1.5E-06 3.2E-11 74.9 10.6 145 102-283 1-147 (172)
17 cd01456 vWA_ywmD_type VWA ywmD 98.4 1.7E-06 3.8E-11 79.8 10.0 160 101-283 21-188 (206)
18 cd01482 vWA_collagen_alphaI-XI 98.3 1.2E-05 2.6E-10 71.5 11.6 142 102-285 2-151 (164)
19 cd01470 vWA_complement_factors 98.2 1.2E-05 2.5E-10 73.7 11.7 156 101-285 1-176 (198)
20 cd01473 vWA_CTRP CTRP for CS 98.2 2.8E-05 6E-10 72.2 14.2 151 102-285 2-160 (192)
21 cd01472 vWA_collagen von Wille 98.2 1.5E-05 3.2E-10 70.6 11.2 141 102-285 2-151 (164)
22 cd01467 vWA_BatA_type VWA BatA 98.2 2.1E-05 4.5E-10 70.1 11.9 140 101-274 3-142 (180)
23 TIGR03788 marine_srt_targ mari 98.2 1.1E-05 2.3E-10 86.6 11.8 145 101-284 272-418 (596)
24 cd01476 VWA_integrin_invertebr 98.1 5.6E-05 1.2E-09 66.4 12.7 135 101-276 1-143 (163)
25 PF13768 VWA_3: von Willebrand 98.1 2.2E-05 4.9E-10 68.7 9.6 143 102-284 2-146 (155)
26 cd01480 vWA_collagen_alpha_1-V 98.0 6.4E-05 1.4E-09 68.6 10.8 146 101-284 3-160 (186)
27 PTZ00441 sporozoite surface pr 97.9 0.00015 3.3E-09 78.0 14.5 141 101-275 43-189 (576)
28 cd01462 VWA_YIEM_type VWA YIEM 97.9 0.00026 5.7E-09 61.7 13.5 133 102-275 2-135 (152)
29 cd01453 vWA_transcription_fact 97.9 0.00017 3.6E-09 66.5 11.8 139 101-275 4-147 (183)
30 PF00092 VWA: von Willebrand f 97.9 7.3E-05 1.6E-09 65.2 8.6 148 102-284 1-153 (178)
31 cd01474 vWA_ATR ATR (Anthrax T 97.8 0.00014 3.1E-09 66.0 9.8 146 101-285 5-155 (185)
32 cd01475 vWA_Matrilin VWA_Matri 97.8 0.00022 4.9E-09 67.0 11.2 142 101-284 3-155 (224)
33 cd01451 vWA_Magnesium_chelatas 97.8 0.00046 1E-08 62.4 12.5 145 103-283 3-153 (178)
34 PRK13685 hypothetical protein; 97.8 0.00027 5.9E-09 70.6 11.8 143 101-275 89-239 (326)
35 cd01477 vWA_F09G8-8_type VWA F 97.7 0.00061 1.3E-08 63.7 11.8 147 101-283 20-181 (193)
36 PF09967 DUF2201: VWA-like dom 97.6 0.00026 5.6E-09 62.1 8.4 121 103-283 1-125 (126)
37 cd01469 vWA_integrins_alpha_su 97.6 0.00065 1.4E-08 61.6 11.3 135 101-275 1-143 (177)
38 cd01460 vWA_midasin VWA_Midasi 97.6 0.0008 1.7E-08 66.5 12.6 138 101-275 61-205 (266)
39 cd01458 vWA_ku Ku70/Ku80 N-ter 97.4 0.0057 1.2E-07 57.3 14.3 162 102-283 3-183 (218)
40 PRK13406 bchD magnesium chelat 97.3 0.0026 5.7E-08 69.0 13.4 159 101-290 402-563 (584)
41 TIGR02031 BchD-ChlD magnesium 97.3 0.0031 6.7E-08 68.3 13.8 158 101-288 408-574 (589)
42 cd01481 vWA_collagen_alpha3-VI 97.2 0.0044 9.5E-08 56.2 11.2 141 102-284 2-153 (165)
43 cd01452 VWA_26S_proteasome_sub 97.1 0.0051 1.1E-07 57.8 11.3 161 103-302 6-174 (187)
44 TIGR03436 acidobact_VWFA VWFA- 97.1 0.006 1.3E-07 59.4 11.9 134 101-274 54-204 (296)
45 cd01455 vWA_F11C1-5a_type Von 97.0 0.0039 8.4E-08 59.1 9.6 158 102-284 2-162 (191)
46 TIGR02442 Cob-chelat-sub cobal 96.9 0.015 3.2E-07 63.6 14.0 141 101-275 466-611 (633)
47 PF05762 VWA_CoxE: VWA domain 96.5 0.023 5E-07 54.0 10.8 121 101-261 58-179 (222)
48 TIGR00868 hCaCC calcium-activa 96.4 0.029 6.2E-07 63.6 11.7 142 102-283 306-449 (863)
49 PRK10997 yieM hypothetical pro 96.3 0.071 1.5E-06 57.0 13.6 144 101-284 324-468 (487)
50 COG2425 Uncharacterized protei 93.2 0.94 2E-05 48.1 11.5 130 102-271 274-405 (437)
51 COG1240 ChlD Mg-chelatase subu 92.6 1.4 3.1E-05 43.8 11.2 144 97-276 75-224 (261)
52 PF03731 Ku_N: Ku70/Ku80 N-ter 87.1 8.6 0.00019 35.8 11.2 149 103-273 2-173 (224)
53 COG4245 TerY Uncharacterized p 85.6 5.5 0.00012 38.4 8.9 136 102-284 5-159 (207)
54 COG4548 NorD Nitric oxide redu 73.6 13 0.00028 40.9 7.9 93 198-299 527-619 (637)
55 PF11775 CobT_C: Cobalamin bio 70.2 13 0.00028 36.3 6.5 64 209-274 121-187 (219)
56 KOG2353 L-type voltage-depende 67.5 54 0.0012 39.1 11.8 147 101-281 226-382 (1104)
57 TIGR00578 ku70 ATP-dependent D 65.0 73 0.0016 35.1 11.7 166 102-284 12-194 (584)
58 KOG4465 Uncharacterized conser 54.1 1.5E+02 0.0033 31.6 11.1 142 101-281 428-570 (598)
59 PF04131 NanE: Putative N-acet 52.7 1.4E+02 0.003 28.8 9.8 97 85-237 53-155 (192)
60 COG3864 Uncharacterized protei 52.0 56 0.0012 34.0 7.5 52 199-274 323-374 (396)
61 PF00113 Enolase_C: Enolase, C 49.7 41 0.00088 34.1 6.1 156 79-270 76-234 (295)
62 cd03313 enolase Enolase: Enola 47.9 1.5E+02 0.0032 31.1 10.2 64 82-151 212-278 (408)
63 PF02601 Exonuc_VII_L: Exonucl 46.5 64 0.0014 32.1 7.0 85 182-278 26-121 (319)
64 PF07466 DUF1517: Protein of u 46.2 32 0.0007 34.7 4.8 15 221-235 216-232 (289)
65 PF06415 iPGM_N: BPG-independe 45.2 41 0.00088 32.9 5.2 56 208-274 14-72 (223)
66 COG1488 PncB Nicotinic acid ph 42.5 98 0.0021 32.8 7.9 62 195-275 264-325 (405)
67 TIGR01651 CobT cobaltochelatas 41.6 57 0.0012 36.3 6.1 64 208-275 500-568 (600)
68 PLN00191 enolase 39.6 2.8E+02 0.0061 29.8 10.9 70 81-151 241-312 (457)
69 PF04811 Sec23_trunk: Sec23/Se 38.9 97 0.0021 29.5 6.7 162 102-283 5-212 (243)
70 PRK00286 xseA exodeoxyribonucl 37.3 84 0.0018 32.8 6.5 35 251-285 179-213 (438)
71 PF11443 DUF2828: Domain of un 35.8 1.9E+02 0.0042 31.9 9.0 113 91-237 332-450 (534)
72 COG3552 CoxE Protein containin 35.2 1.7E+02 0.0038 31.0 8.2 105 102-237 220-325 (395)
73 PF02601 Exonuc_VII_L: Exonucl 35.2 1.6E+02 0.0035 29.2 7.8 54 207-273 25-84 (319)
74 PRK15458 tagatose 6-phosphate 34.8 4.6E+02 0.01 28.3 11.3 69 207-278 27-98 (426)
75 PTZ00081 enolase; Provisional 33.7 3.9E+02 0.0085 28.6 10.8 67 81-151 226-298 (439)
76 PRK00077 eno enolase; Provisio 33.0 4.6E+02 0.0099 27.7 11.1 63 82-151 215-278 (425)
77 COG4573 GatZ Predicted tagatos 32.0 2.9E+02 0.0064 29.3 9.1 109 207-354 27-142 (426)
78 TIGR00696 wecB_tagA_cpsF bacte 31.7 3.9E+02 0.0085 24.9 9.3 61 197-275 50-111 (177)
79 TIGR00237 xseA exodeoxyribonuc 31.4 1.2E+02 0.0026 32.1 6.5 67 207-286 140-209 (432)
80 KOG1552 Predicted alpha/beta h 31.3 1.1E+02 0.0024 30.8 5.8 67 86-164 73-140 (258)
81 cd01468 trunk_domain trunk dom 30.9 3.1E+02 0.0068 26.1 8.7 161 102-283 5-210 (239)
82 TIGR02836 spore_IV_A stage IV 29.2 57 0.0012 35.4 3.6 41 225-269 146-187 (492)
83 PRK15052 D-tagatose-1,6-bispho 28.0 6.8E+02 0.015 27.0 11.2 71 207-280 24-97 (421)
84 TIGR02810 agaZ_gatZ D-tagatose 27.3 5.8E+02 0.012 27.6 10.5 69 207-278 23-94 (420)
85 cd01567 NAPRTase_PncB Nicotina 26.4 3E+02 0.0065 28.0 8.1 76 183-275 247-328 (343)
86 TIGR02493 PFLA pyruvate format 23.1 4.6E+02 0.01 24.4 8.3 38 196-236 67-106 (235)
87 PRK00979 tetrahydromethanopter 22.4 1.7E+02 0.0036 30.2 5.4 47 207-267 55-101 (308)
88 COG4822 CbiK Cobalamin biosynt 22.2 3.7E+02 0.008 26.9 7.4 172 82-275 58-242 (265)
89 COG4867 Uncharacterized protei 21.9 3.5E+02 0.0076 29.6 7.7 137 103-274 466-611 (652)
90 PF13401 AAA_22: AAA domain; P 21.8 3.1E+02 0.0068 22.5 6.2 56 203-273 69-125 (131)
91 KOG2807 RNA polymerase II tran 21.7 3.7E+02 0.008 28.3 7.6 145 95-274 56-203 (378)
92 COG1436 NtpG Archaeal/vacuolar 21.0 1.3E+02 0.0027 26.2 3.6 57 209-280 34-90 (104)
93 cd08195 DHQS Dehydroquinate sy 20.5 3.8E+02 0.0083 27.0 7.6 65 199-275 29-95 (345)
No 1
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-77 Score=615.64 Aligned_cols=255 Identities=46% Similarity=0.697 Sum_probs=237.8
Q ss_pred cccccccccccccccccHHHHHHHHHHcCcceeceEEEEecCCCCCcCCCCCCCCCCccccCC-CCCHHHHHHHHHhhhc
Q 015549 69 TRKLDRRYSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAISIIGKTL 147 (405)
Q Consensus 69 ~~~~~~~~~~i~~~ys~ld~V~~aL~~~Gle~~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~-~~N~YqqAI~~Ig~vl 147 (405)
+++.+.++..+.+.|+++++++.++..+|++++||+||||||+||+|++. +.||||+++ .+|+||+||++||++|
T Consensus 254 ~k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~----~sSLHyi~p~~~N~Y~~Ai~~vG~~l 329 (529)
T KOG1327|consen 254 KKSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRN----PSSLHYIDPHQPNPYEQAIRSVGETL 329 (529)
T ss_pred hhcccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCC----CCcceecCCCCCCHHHHHHHHHhhhh
Confidence 34567789999999999999999999999999999999999999999865 459999996 7899999999999999
Q ss_pred cccCCCCccceEeecCCCCC---CCC--cccccCCCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC-
Q 015549 148 AVFDEDNLIPCYGFGDASTH---DQD--VFSFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG- 221 (405)
Q Consensus 148 ~~yD~D~~ip~yGFGa~~~~---~~~--vF~f~~~~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~- 221 (405)
+.||+|++||||||||+.+. .++ +|+|+|++++|+|++|||+||++++|+|+|+|||+|+|||++|+++++++.
T Consensus 330 q~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~ 409 (529)
T KOG1327|consen 330 QDYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGN 409 (529)
T ss_pred cccCCCCccccccccccCCCCcccccceeecCCCCCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhcc
Confidence 99999999999999999765 344 456678999999999999999999999999999999999999999999886
Q ss_pred --CccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccCCCcccccccCCCCCC-------ccc
Q 015549 222 --GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPA-------RAF 292 (405)
Q Consensus 222 --~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS~lPLSIIiVGVGd~~F~~M~~LDd~l~~-------R~r 292 (405)
++||||||||||+||| |++|++|||.||+||||||||||||+||++|++||++.+. |.|
T Consensus 410 ~~~qY~VLlIitDG~vTd------------m~~T~~AIV~AS~lPlSIIiVGVGd~df~~M~~lD~d~~~l~~~gr~~~r 477 (529)
T KOG1327|consen 410 TAGQYHVLLIITDGVVTD------------MKETRDAIVSASDLPLSIIIVGVGDADFDMMRELDGDDPKLRSPGRIAER 477 (529)
T ss_pred CCcceEEEEEEeCCcccc------------HHHHHHHHHhhccCCeEEEEEEeCCCCHHHHHHhhcCCcccccccccccc
Confidence 8999999999999998 9999999999999999999999999999999999988776 789
Q ss_pred cceecccchhhhcccCCcchhHHHHHHHHHHHhHHHHHHHHHhcccC
Q 015549 293 DNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNILG 339 (405)
Q Consensus 293 DNvQFV~f~di~~k~~~~~~~d~~LA~~~L~EIP~Ql~ay~~l~iL~ 339 (405)
||||||+|+||+.++.+.+.++++||+++|+|||+||++||+++.|.
T Consensus 478 D~vQFV~f~~~~~~~~~~~~~~~~lA~~vL~EIP~Q~~~y~~~~~~~ 524 (529)
T KOG1327|consen 478 DNVQFVPFRDIMNGAENPSDKEAALALAVLAEIPQQYVQYMRLRGIL 524 (529)
T ss_pred cceEeecHHHHhhcCCcccchhHHHHHHHHHHhhHHHHHHHHhcCCC
Confidence 99999999999998888888999999999999999999999996554
No 2
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=100.00 E-value=1.1e-70 Score=530.04 Aligned_cols=223 Identities=56% Similarity=0.894 Sum_probs=203.6
Q ss_pred ccccHHHHHHHHHHcCcceeceEEEEecCCCCCcCCCCCCCCCCccccCC-CCCHHHHHHHHHhhhccccCCCCccceEe
Q 015549 82 DYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAISIIGKTLAVFDEDNLIPCYG 160 (405)
Q Consensus 82 ~ys~ld~V~~aL~~~Gle~~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~-~~N~YqqAI~~Ig~vl~~yD~D~~ip~yG 160 (405)
.|+||||+ ++|+| +||+||||||+||+|+++ ++||||+++ .+|+||+||++||+||+.||+|++|||||
T Consensus 19 ~~tFldy~-----~~G~~-~nl~vaIDfT~SNg~p~~----~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~G 88 (254)
T cd01459 19 QPTFLDYR-----SAGLE-SNLIVAIDFTKSNGWPGE----KRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFG 88 (254)
T ss_pred CCCHHHHH-----hCCCe-eeEEEEEEeCCCCCCCCC----CCCcccCCCCCccHHHHHHHHHHHHHHhcCCCCceeeEe
Confidence 89999999 99999 599999999999999864 589999976 68999999999999999999999999999
Q ss_pred ecCCCCCCCCcccc---cCCCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCC--ccEEEEEEeCCcc
Q 015549 161 FGDASTHDQDVFSF---YSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGG--QYHVLLIIADGQV 235 (405)
Q Consensus 161 FGa~~~~~~~vF~f---~~~~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~--~Y~VLLIITDG~I 235 (405)
||++.+++..++++ ++++|+|.|++||+++|++++++|+|+|||+|+|||++|+++++++.. +|+||||||||+|
T Consensus 89 FGa~~~~~~~v~~~f~~~~~~p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i 168 (254)
T cd01459 89 FGAIVTKDQSVFSFFPGYSESPECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEI 168 (254)
T ss_pred ecccCCCCCccccccCCCCCCCcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCc
Confidence 99998766555444 588999999999999999999999999999999999999999987643 4999999999999
Q ss_pred ccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccCCCcccccccCC-------CCCCccccceecccchhhhcccC
Q 015549 236 TRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDD-------NIPARAFDNFQFVNFTEIMSKNH 308 (405)
Q Consensus 236 tds~d~~~~~~~~d~~eTi~aIv~AS~lPLSIIiVGVGd~~F~~M~~LDd-------~l~~R~rDNvQFV~f~di~~k~~ 308 (405)
+| +++|+++|++||++||||||||||+++|+.|++||+ +++.|.|||||||+|++++...
T Consensus 169 ~D------------~~~t~~aIv~AS~~PlSIiiVGVGd~~F~~M~~LD~d~~l~~~~~~~~~rDnvqFV~f~~~~~~~- 235 (254)
T cd01459 169 TD------------MNETIKAIVEASKYPLSIVIVGVGDGPFDAMERLDDDDGLESSDGRIATRDIVQFVPFTEFMSNA- 235 (254)
T ss_pred cc------------HHHHHHHHHHHhcCCeEEEEEEeCCCChHHHHHhcCccccccccCCcceecceeeecchhhcccc-
Confidence 97 899999999999999999999999999999999997 4677899999999999997431
Q ss_pred CcchhHHHHHHHHHHHhHHHH
Q 015549 309 DQTRKETEFALSALMEIPSQY 329 (405)
Q Consensus 309 ~~~~~d~~LA~~~L~EIP~Ql 329 (405)
..++++||+++|+|||+||
T Consensus 236 --~~~~~~La~~~L~EiP~Q~ 254 (254)
T cd01459 236 --GNPEAALATAALAEIPSQL 254 (254)
T ss_pred --cccHHHHHHHHHHhccccC
Confidence 1358899999999999996
No 3
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=100.00 E-value=1.5e-47 Score=342.63 Aligned_cols=137 Identities=49% Similarity=0.883 Sum_probs=129.0
Q ss_pred CccccCC-CCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCC---CCccccc--CCCCccCCHHHHHHHHHhhCCce
Q 015549 125 SLHYIGD-GLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHD---QDVFSFY--SGGRFCYGFEEVLSRYREIVPNL 198 (405)
Q Consensus 125 SLH~i~~-~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~---~~vF~f~--~~~p~~~G~egVl~aYr~~l~~v 198 (405)
||||+++ .+|+||+||++||++|+.||+|++||+|||||+.+++ ++||+|+ +++++|.|++|||++|++++++|
T Consensus 1 SLH~~~~~~~N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v 80 (146)
T PF07002_consen 1 SLHYISPNQPNPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKV 80 (146)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhhe
Confidence 8999998 4899999999999999999999999999999998765 4568776 67899999999999999999999
Q ss_pred eecCCCChHHHHHHHHHHHHh---cCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecc
Q 015549 199 KLAGPTSFAPVIEMAMSIVEQ---SGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVG 273 (405)
Q Consensus 199 ~LsGPT~FaPVI~~ai~i~~~---s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS~lPLSIIiVGVG 273 (405)
+|+|||+|+|||++|++++++ .+++|+||||||||+|+| |++|++||++||++||||||||||
T Consensus 81 ~l~GPT~fapiI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D------------~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 81 QLSGPTNFAPIINHAAKIAKQSNQNGQQYFILLILTDGQITD------------MEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred EECCCccHHHHHHHHHHHHhhhccCCceEEEEEEeccccccc------------HHHHHHHHHHHccCCeEEEEEEeC
Confidence 999999999999999999984 567999999999999997 899999999999999999999998
No 4
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=100.00 E-value=5.9e-35 Score=273.26 Aligned_cols=197 Identities=24% Similarity=0.327 Sum_probs=163.8
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCc
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~ 180 (405)
.++.++||.|+||. .++.. ...|++++++..++..||+|+.|+||.|+.+..+..+| .
T Consensus 2 ArV~LVLD~SGSM~----------~~yk~----G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~~v--------t 59 (200)
T PF10138_consen 2 ARVYLVLDISGSMR----------PLYKD----GTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLPDV--------T 59 (200)
T ss_pred cEEEEEEeCCCCCc----------hhhhC----ccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCCCc--------C
Confidence 36899999999995 33333 34799999999999999999999999999987765544 1
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc-CCc-cEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 015549 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS-GGQ-YHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 258 (405)
Q Consensus 181 ~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s-~~~-Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv 258 (405)
...+++.++.....++.+...|.|+++|||++|++++.++ +.. ...+||||||++++ .+++.++|+
T Consensus 60 ~~~~~~~v~~~~~~~~~~~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~------------~~~~~~~i~ 127 (200)
T PF10138_consen 60 LDNYEGYVDELHAGLPDWGRMGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDD------------RRAIEKLIR 127 (200)
T ss_pred HHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccc------------hHHHHHHHH
Confidence 2345555543333333445557799999999999998754 233 45558999999987 789999999
Q ss_pred HhcCCCcEEEEEeccCCCcccccccCCCCCCccccceecccchhhhcccCCcchhHHHHHHHHHHHhHHHHHHHHHhccc
Q 015549 259 KASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNIL 338 (405)
Q Consensus 259 ~AS~lPLSIIiVGVGd~~F~~M~~LDd~l~~R~rDNvQFV~f~di~~k~~~~~~~d~~LA~~~L~EIP~Ql~ay~~l~iL 338 (405)
+||++||+|+|||||+.+|+.|++||+ |.+|.+||+.||.+.++.. ++|++|++.+|.|+|.|+++++++|||
T Consensus 128 ~as~~pifwqFVgiG~~~f~fL~kLD~-l~gR~vDNa~Ff~~~d~~~------lsD~eLy~~LL~Efp~Wl~~ar~~gi~ 200 (200)
T PF10138_consen 128 EASDEPIFWQFVGIGDSNFGFLEKLDD-LAGRVVDNAGFFAIDDIDE------LSDEELYDRLLAEFPDWLKAARAKGIL 200 (200)
T ss_pred hccCCCeeEEEEEecCCcchHHHHhhc-cCCcccCCcCeEecCCccc------CCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999997 9999999999999999852 589999999999999999999999987
No 5
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.82 E-value=7.4e-20 Score=168.06 Aligned_cols=169 Identities=18% Similarity=0.241 Sum_probs=126.7
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCcc
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~~ 181 (405)
.++++||.|+||.+.. .+.++| ..+.+++++.+|+.++..||.|+...+|+|+.... ++..
T Consensus 4 dvv~~ID~SgSM~~~~----~~~~~~----k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~----~~~~------- 64 (199)
T cd01457 4 DYTLLIDKSGSMAEAD----EAKERS----RWEEAQESTRALARKCEEYDSDGITVYLFSGDFRR----YDNV------- 64 (199)
T ss_pred CEEEEEECCCcCCCCC----CCCCch----HHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccc----cCCc-------
Confidence 6899999999998542 112333 24789999999999999999999776666665321 1111
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHH-Hhc-C---C-ccEEEEEEeCCccccccccccCCCChhHHHHHH
Q 015549 182 YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIV-EQS-G---G-QYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVD 255 (405)
Q Consensus 182 ~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~-~~s-~---~-~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~ 255 (405)
. .+++.+.+.+.. ..|+|++.+.|+.+++.. +.. . . .+.++||||||..++ .+.+.+
T Consensus 65 ~-~~~v~~~~~~~~----p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d------------~~~~~~ 127 (199)
T cd01457 65 N-SSKVDQLFAENS----PDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDD------------KDAVER 127 (199)
T ss_pred C-HHHHHHHHhcCC----CCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCc------------HHHHHH
Confidence 1 566666665443 459999999999998543 221 1 1 278889999999876 678899
Q ss_pred HHHHhcCC-----CcEEEEEeccCC--CcccccccCCCC--CCccccceecccchhhhcc
Q 015549 256 AIVKASEL-----PLSIVLVGVGDG--PWDMMKEFDDNI--PARAFDNFQFVNFTEIMSK 306 (405)
Q Consensus 256 aIv~AS~l-----PLSIIiVGVGd~--~F~~M~~LDd~l--~~R~rDNvQFV~f~di~~k 306 (405)
+|++|++. +|.|.|||||++ .|..|++||+.+ .++.||||+||+|+++...
T Consensus 128 ~i~~a~~~l~~~~~i~i~~v~vG~~~~~~~~L~~ld~~~~~~~~~~d~vd~~~~~~~~~~ 187 (199)
T cd01457 128 VIIKASDELDADNELAISFLQIGRDPAATAFLKALDDQLQEVGAKFDIVDTVTWDDMERL 187 (199)
T ss_pred HHHHHHHhhccccCceEEEEEeCCcHHHHHHHHHHhHHHHhcCCcccceeeeeHHhhhcC
Confidence 99999873 899999999985 899999999753 3467899999999998653
No 6
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=98.90 E-value=1.6e-08 Score=87.61 Aligned_cols=150 Identities=19% Similarity=0.280 Sum_probs=106.5
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCC---CCccceEeecCCCCCCCCcccccCC
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDASTHDQDVFSFYSG 177 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~---D~~ip~yGFGa~~~~~~~vF~f~~~ 177 (405)
.++++.||.|.||.. .....+...+..++..+.. +..|-+++|++.... .+++.
T Consensus 2 ~~v~l~vD~S~SM~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~---~~~~~-- 58 (177)
T smart00327 2 LDVVFLLDGSGSMGP------------------NRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATV---LFPLN-- 58 (177)
T ss_pred ccEEEEEeCCCccch------------------HHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceE---EEccc--
Confidence 478999999999941 1234444445555555544 889999999985322 22221
Q ss_pred CCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc--C---CccEEEEEEeCCccccccccccCCCChhHHH
Q 015549 178 GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS--G---GQYHVLLIIADGQVTRSVDTVRGCLSPQEQK 252 (405)
Q Consensus 178 ~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s--~---~~Y~VLLIITDG~Itds~d~~~~~~~~d~~e 252 (405)
.+.+.+.+++......+. ..|.|++...|+.+++.+++. . +...+|+|||||...+. +.
T Consensus 59 --~~~~~~~~~~~i~~~~~~--~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~------------~~ 122 (177)
T smart00327 59 --DSRSKDALLEALASLSYK--LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDG------------GD 122 (177)
T ss_pred --ccCCHHHHHHHHHhcCCC--CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCC------------cc
Confidence 345677777666655443 568899999999999987521 1 12578899999998751 45
Q ss_pred HHHHHHHhcCCCcEEEEEeccCC-CcccccccCCCCCC
Q 015549 253 TVDAIVKASELPLSIVLVGVGDG-PWDMMKEFDDNIPA 289 (405)
Q Consensus 253 Ti~aIv~AS~lPLSIIiVGVGd~-~F~~M~~LDd~l~~ 289 (405)
+.+++.++.+..+.|++||+|+. +.+.|+.|.....+
T Consensus 123 ~~~~~~~~~~~~i~i~~i~~~~~~~~~~l~~~~~~~~~ 160 (177)
T smart00327 123 LLKAAKELKRSGVKVFVVGVGNDVDEEELKKLASAPGG 160 (177)
T ss_pred HHHHHHHHHHCCCEEEEEEccCccCHHHHHHHhCCCcc
Confidence 67777777788899999999998 89999999864443
No 7
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.84 E-value=3.8e-08 Score=86.21 Aligned_cols=147 Identities=19% Similarity=0.259 Sum_probs=102.5
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCc
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~ 180 (405)
.++++++|.|+||.. ...+.|...+..++..+..+..|-+++|+....... .. ..
T Consensus 3 ~~v~~vlD~S~SM~~------------------~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~---~~----~~ 57 (171)
T cd01461 3 KEVVFVIDTSGSMSG------------------TKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFS---PS----SV 57 (171)
T ss_pred ceEEEEEECCCCCCC------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceeec---Cc----ce
Confidence 479999999999951 124677777777788888888899999998643211 10 01
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHh
Q 015549 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKA 260 (405)
Q Consensus 181 ~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~A 260 (405)
..+.+.+ +...+.+..+...|-|++...|+.+.+..+...+.--++|+||||...+ .+++.+++.++
T Consensus 58 ~~~~~~~-~~~~~~l~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~~ 124 (171)
T cd01461 58 SATAENV-AAAIEYVNRLQALGGTNMNDALEAALELLNSSPGSVPQIILLTDGEVTN------------ESQILKNVREA 124 (171)
T ss_pred eCCHHHH-HHHHHHHHhcCCCCCcCHHHHHHHHHHhhccCCCCccEEEEEeCCCCCC------------HHHHHHHHHHh
Confidence 1222222 2223344455568999999999999888765333446789999999764 46777888888
Q ss_pred cCCCcEEEEEeccC-CCcccccccCC
Q 015549 261 SELPLSIVLVGVGD-GPWDMMKEFDD 285 (405)
Q Consensus 261 S~lPLSIIiVGVGd-~~F~~M~~LDd 285 (405)
.+..+-|..||+|. .+...|+.+-+
T Consensus 125 ~~~~i~i~~i~~g~~~~~~~l~~ia~ 150 (171)
T cd01461 125 LSGRIRLFTFGIGSDVNTYLLERLAR 150 (171)
T ss_pred cCCCceEEEEEeCCccCHHHHHHHHH
Confidence 77789999999996 46666776653
No 8
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.73 E-value=1e-07 Score=86.91 Aligned_cols=147 Identities=14% Similarity=0.244 Sum_probs=97.3
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCC--
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGG-- 178 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~-- 178 (405)
.++++.||.|+||.. +..+.|-..+..++..+..+..|-++.|+..... ++.+....
T Consensus 14 ~~vv~llD~SgSM~~------------------~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~---~~~~~~~~~~ 72 (190)
T cd01463 14 KDIVILLDVSGSMTG------------------QRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNP---VVPCFNDTLV 72 (190)
T ss_pred ceEEEEEECCCCCCc------------------HHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeE---EeeecccceE
Confidence 689999999999951 1345566666666777787789999999987542 22221110
Q ss_pred -CccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHh---c------CCccEEEEEEeCCccccccccccCCCCh
Q 015549 179 -RFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQ---S------GGQYHVLLIIADGQVTRSVDTVRGCLSP 248 (405)
Q Consensus 179 -p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~---s------~~~Y~VLLIITDG~Itds~d~~~~~~~~ 248 (405)
......+.+ .+.+..++..|.|++...|+.+.+..++ . ...-.++++||||..++
T Consensus 73 ~~~~~~~~~~----~~~l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~----------- 137 (190)
T cd01463 73 QATTSNKKVL----KEALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPEN----------- 137 (190)
T ss_pred ecCHHHHHHH----HHHHhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCc-----------
Confidence 001123333 3345566778999999999999887765 1 12235789999998764
Q ss_pred hHHHHHHHHHHh--cCCCcEEEEEeccCC--CcccccccC
Q 015549 249 QEQKTVDAIVKA--SELPLSIVLVGVGDG--PWDMMKEFD 284 (405)
Q Consensus 249 d~~eTi~aIv~A--S~lPLSIIiVGVGd~--~F~~M~~LD 284 (405)
..+.++++... .+.++-|..||||.+ +...|++|=
T Consensus 138 -~~~~~~~~~~~~~~~~~v~i~tigiG~~~~d~~~L~~lA 176 (190)
T cd01463 138 -YKEIFDKYNWDKNSEIPVRVFTYLIGREVTDRREIQWMA 176 (190)
T ss_pred -HhHHHHHhcccccCCCcEEEEEEecCCccccchHHHHHH
Confidence 34445554422 235899999999975 677777764
No 9
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.71 E-value=1.7e-07 Score=84.58 Aligned_cols=169 Identities=12% Similarity=0.165 Sum_probs=106.2
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccC---CCCccceEeecCCCCCCCCcccccCC
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDASTHDQDVFSFYSG 177 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---~D~~ip~yGFGa~~~~~~~vF~f~~~ 177 (405)
+.+++.||-|+|++.. |-+.++...+..+++.+. ++-.+-++.|+.... .++.|...
T Consensus 1 ~Dv~~vlD~SgSm~~~-----------------~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~---~~~~l~~~ 60 (186)
T cd01471 1 LDLYLLVDGSGSIGYS-----------------NWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAK---ELIRLSSP 60 (186)
T ss_pred CcEEEEEeCCCCccch-----------------hhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCce---EEEECCCc
Confidence 3689999999999621 124566666666666664 455899999997543 23344321
Q ss_pred CCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc----CCccEEEEEEeCCccccccccccCCCChhHHHH
Q 015549 178 GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKT 253 (405)
Q Consensus 178 ~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s----~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eT 253 (405)
. ....+.+++.-+.+......+|.|+++..|+.|.+...+. ...-.+++|||||..++ ..++
T Consensus 61 ~--~~~~~~~~~~i~~l~~~~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~------------~~~~ 126 (186)
T cd01471 61 N--STNKDLALNAIRALLSLYYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDS------------KFRT 126 (186)
T ss_pred c--ccchHHHHHHHHHHHhCcCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCC------------Ccch
Confidence 1 1122232222222233334578999999999999887652 12235779999998765 2334
Q ss_pred HHHHHHhcCCCcEEEEEeccC-CCcccccccCCCCCCc--cccceecccchhhh
Q 015549 254 VDAIVKASELPLSIVLVGVGD-GPWDMMKEFDDNIPAR--AFDNFQFVNFTEIM 304 (405)
Q Consensus 254 i~aIv~AS~lPLSIIiVGVGd-~~F~~M~~LDd~l~~R--~rDNvQFV~f~di~ 304 (405)
.++..++-+..+-|.+||||. .+.+.|+.|-+ .+.. ..+++-+..|+++.
T Consensus 127 ~~~a~~l~~~gv~v~~igiG~~~d~~~l~~ia~-~~~~~~~~~~~~~~~~~~~~ 179 (186)
T cd01471 127 LKEARKLRERGVIIAVLGVGQGVNHEENRSLVG-CDPDDSPCPLYLQSSWSEVQ 179 (186)
T ss_pred hHHHHHHHHCCCEEEEEEeehhhCHHHHHHhcC-CCCCCCCCCeeecCCHHHHH
Confidence 445555556789999999997 47788888764 2222 24677777777664
No 10
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.69 E-value=3.5e-07 Score=76.51 Aligned_cols=146 Identities=16% Similarity=0.313 Sum_probs=97.5
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCC---CCccceEeecCCCCCCCCcccccCCC
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDASTHDQDVFSFYSGG 178 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~---D~~ip~yGFGa~~~~~~~vF~f~~~~ 178 (405)
+++++||.|+|+. ....+++...+..++..+.. ...+-+++|+..... ++.++.
T Consensus 2 ~v~~viD~S~Sm~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~---~~~~~~-- 58 (161)
T cd00198 2 DIVFLLDVSGSMG------------------GEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARV---VLPLTT-- 58 (161)
T ss_pred cEEEEEeCCCCcC------------------cchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccce---eecccc--
Confidence 6899999999983 12345556666666666665 788999999974321 222221
Q ss_pred CccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc--CCccEEEEEEeCCccccccccccCCCChhHHHHHHH
Q 015549 179 RFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS--GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDA 256 (405)
Q Consensus 179 p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s--~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~a 256 (405)
....+.+.+.-.. +.. ...|.|++...++.+.+...+. .....+|++||||..++. .....+.
T Consensus 59 --~~~~~~~~~~~~~-~~~-~~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~-----------~~~~~~~ 123 (161)
T cd00198 59 --DTDKADLLEAIDA-LKK-GLGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDG-----------PELLAEA 123 (161)
T ss_pred --cCCHHHHHHHHHh-ccc-CCCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCC-----------cchhHHH
Confidence 1223333322222 211 3678999999999999998763 456788999999987752 1244556
Q ss_pred HHHhcCCCcEEEEEeccC-CCcccccccCC
Q 015549 257 IVKASELPLSIVLVGVGD-GPWDMMKEFDD 285 (405)
Q Consensus 257 Iv~AS~lPLSIIiVGVGd-~~F~~M~~LDd 285 (405)
+..+....+.|.+||+|+ .+-..|+.|+.
T Consensus 124 ~~~~~~~~v~v~~v~~g~~~~~~~l~~l~~ 153 (161)
T cd00198 124 ARELRKLGITVYTIGIGDDANEDELKEIAD 153 (161)
T ss_pred HHHHHHcCCEEEEEEcCCCCCHHHHHHHhc
Confidence 666677799999999998 66777777764
No 11
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.64 E-value=1.6e-07 Score=84.44 Aligned_cols=144 Identities=19% Similarity=0.274 Sum_probs=96.3
Q ss_pred eeceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccC---CCCccceEeecCCCCCCCCcccccC
Q 015549 100 SSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDASTHDQDVFSFYS 176 (405)
Q Consensus 100 ~~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---~D~~ip~yGFGa~~~~~~~vF~f~~ 176 (405)
.+++++.||.|+||... .+ ..-++|+..+...+...+ ++..+-++.|+.... .++++..
T Consensus 3 ~~~v~~llD~SgSM~~~--------~~-------~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~---~~~~l~~ 64 (176)
T cd01464 3 RLPIYLLLDTSGSMAGE--------PI-------EALNQGLQMLQSELRQDPYALESVEISVITFDSAAR---VIVPLTP 64 (176)
T ss_pred CCCEEEEEECCCCCCCh--------HH-------HHHHHHHHHHHHHHhcChhhccccEEEEEEecCCce---EecCCcc
Confidence 36789999999999521 11 123566666665555432 345799999998542 2333321
Q ss_pred CCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCc---------cEEEEEEeCCccccccccccCCCC
Q 015549 177 GGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQ---------YHVLLIIADGQVTRSVDTVRGCLS 247 (405)
Q Consensus 177 ~~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~~---------Y~VLLIITDG~Itds~d~~~~~~~ 247 (405)
+.. .....+...|-|++...|+++.+........ -.++++||||..++
T Consensus 65 -------~~~------~~~~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~---------- 121 (176)
T cd01464 65 -------LES------FQPPRLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTD---------- 121 (176)
T ss_pred -------HHh------cCCCcccCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCc----------
Confidence 111 1234566789999999999999887542111 24679999999775
Q ss_pred hhHHHHHHHHHHhcCCCcEEEEEeccC-CCcccccccCC
Q 015549 248 PQEQKTVDAIVKASELPLSIVLVGVGD-GPWDMMKEFDD 285 (405)
Q Consensus 248 ~d~~eTi~aIv~AS~lPLSIIiVGVGd-~~F~~M~~LDd 285 (405)
+.....+++.++-...+-|..||||. .+.+.|++|-+
T Consensus 122 -~~~~~~~~~~~~~~~~~~i~~igiG~~~~~~~L~~ia~ 159 (176)
T cd01464 122 -DLTAAIERIKEARDSKGRIVACAVGPKADLDTLKQITE 159 (176)
T ss_pred -hHHHHHHHHHhhcccCCcEEEEEeccccCHHHHHHHHC
Confidence 23444577887777789999999995 67888888764
No 12
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.54 E-value=5.6e-07 Score=77.14 Aligned_cols=147 Identities=15% Similarity=0.229 Sum_probs=96.1
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCcc
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~~ 181 (405)
++++.+|.|+|+... .. ....+++..+...+...+.+-.+-++.|++.... ++.+....
T Consensus 2 di~~llD~S~Sm~~~-----------~~----~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~---~~~~~~~~--- 60 (161)
T cd01450 2 DIVFLLDGSESVGPE-----------NF----EKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRV---EFSLNDYK--- 60 (161)
T ss_pred cEEEEEeCCCCcCHH-----------HH----HHHHHHHHHHHHheeeCCCceEEEEEEEcCCceE---EEECCCCC---
Confidence 678999999999520 01 1124445555555555556889999999986432 23332211
Q ss_pred CCHHHHHHHHHhhCCceeec-CCCChHHHHHHHHHHHHhcC----CccEEEEEEeCCccccccccccCCCChhHHHHHHH
Q 015549 182 YGFEEVLSRYREIVPNLKLA-GPTSFAPVIEMAMSIVEQSG----GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDA 256 (405)
Q Consensus 182 ~G~egVl~aYr~~l~~v~Ls-GPT~FaPVI~~ai~i~~~s~----~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~a 256 (405)
..+.+++....... .. |-|++...|+.+.+...+.. ..-.++++||||..++. .+..++
T Consensus 61 -~~~~~~~~i~~~~~---~~~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~------------~~~~~~ 124 (161)
T cd01450 61 -SKDDLLKAVKNLKY---LGGGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDG------------GDPKEA 124 (161)
T ss_pred -CHHHHHHHHHhccc---CCCCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCC------------cchHHH
Confidence 34555544443221 12 47999999999999887653 45678899999987751 134445
Q ss_pred HHHhcCCCcEEEEEeccCCCcccccccCC
Q 015549 257 IVKASELPLSIVLVGVGDGPWDMMKEFDD 285 (405)
Q Consensus 257 Iv~AS~lPLSIIiVGVGd~~F~~M~~LDd 285 (405)
+.+..+..+-|++||||..+.+.|++|-+
T Consensus 125 ~~~~~~~~v~v~~i~~g~~~~~~l~~la~ 153 (161)
T cd01450 125 AAKLKDEGIKVFVVGVGPADEEELREIAS 153 (161)
T ss_pred HHHHHHCCCEEEEEeccccCHHHHHHHhC
Confidence 55555668999999999988888888753
No 13
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.50 E-value=2e-06 Score=75.39 Aligned_cols=147 Identities=16% Similarity=0.209 Sum_probs=97.1
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCc
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~ 180 (405)
+++++.+|.|+||.. ...+.|...+..++..+..+..+-++.|+..... ++.+.+.
T Consensus 1 ~~~~~vlD~S~SM~~------------------~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~~---~~~~~~~--- 56 (170)
T cd01465 1 LNLVFVIDRSGSMDG------------------PKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAET---VLPATPV--- 56 (170)
T ss_pred CcEEEEEECCCCCCC------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEecCCccE---EecCccc---
Confidence 479999999999951 0146667777778888878789999999986432 2222211
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC--CccEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 015549 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG--GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 258 (405)
Q Consensus 181 ~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~--~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv 258 (405)
...+.+. +.+.+++..|.|++...++.+.+.+++.. ..--.+++||||..++.. .+.+...+++.
T Consensus 57 -~~~~~l~----~~l~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~--------~~~~~~~~~~~ 123 (170)
T cd01465 57 -RDKAAIL----AAIDRLTAGGSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGE--------TDPDELARLVA 123 (170)
T ss_pred -chHHHHH----HHHHcCCCCCCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCC--------CCHHHHHHHHH
Confidence 1223333 23334556789999999999999886542 222557899999865411 12345566666
Q ss_pred HhcCCCcEEEEEeccCC-CcccccccC
Q 015549 259 KASELPLSIVLVGVGDG-PWDMMKEFD 284 (405)
Q Consensus 259 ~AS~lPLSIIiVGVGd~-~F~~M~~LD 284 (405)
++.+..+-|..||||.. +...|+++=
T Consensus 124 ~~~~~~v~i~~i~~g~~~~~~~l~~ia 150 (170)
T cd01465 124 QKRESGITLSTLGFGDNYNEDLMEAIA 150 (170)
T ss_pred HhhcCCeEEEEEEeCCCcCHHHHHHHH
Confidence 66677889999999943 455566553
No 14
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=98.49 E-value=9e-07 Score=78.49 Aligned_cols=140 Identities=13% Similarity=0.246 Sum_probs=91.7
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCcc
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~~ 181 (405)
+++++||.|+||.. +..++|-..+..++..+.++..+-+++|+..... ++++.+...
T Consensus 2 ~v~~vlD~S~SM~~------------------~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~---~~~~~~~~~-- 58 (155)
T cd01466 2 DLVAVLDVSGSMAG------------------DKLQLVKHALRFVISSLGDADRLSIVTFSTSAKR---LSPLRRMTA-- 58 (155)
T ss_pred cEEEEEECCCCCCc------------------HHHHHHHHHHHHHHHhCCCcceEEEEEecCCccc---cCCCcccCH--
Confidence 68899999999951 1234455555555666656667999999986432 223322111
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC--CccEEEEEEeCCccccccccccCCCChhHHHHHHHHHH
Q 015549 182 YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG--GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVK 259 (405)
Q Consensus 182 ~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~--~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~ 259 (405)
.+.+.+ ++.+..+...|-|+...-|+.+.+..++.. +.-.++++||||..++ . .++.+
T Consensus 59 ~~~~~~----~~~i~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~------------~----~~~~~ 118 (155)
T cd01466 59 KGKRSA----KRVVDGLQAGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNH------------G----AVVLR 118 (155)
T ss_pred HHHHHH----HHHHHhccCCCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCc------------c----hhhhc
Confidence 112222 333444667889999999999999886542 2346789999998653 1 22344
Q ss_pred hcCCCcEEEEEeccC-CCcccccccC
Q 015549 260 ASELPLSIVLVGVGD-GPWDMMKEFD 284 (405)
Q Consensus 260 AS~lPLSIIiVGVGd-~~F~~M~~LD 284 (405)
+.+.++-|..||+|. .+...|++|=
T Consensus 119 ~~~~~v~v~~igig~~~~~~~l~~iA 144 (155)
T cd01466 119 ADNAPIPIHTFGLGASHDPALLAFIA 144 (155)
T ss_pred ccCCCceEEEEecCCCCCHHHHHHHH
Confidence 566899999999994 5667777664
No 15
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=98.47 E-value=3.4e-06 Score=75.66 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=92.1
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCC-CCccceEeecCCCCCCC--CcccccCCC
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE-DNLIPCYGFGDASTHDQ--DVFSFYSGG 178 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~-D~~ip~yGFGa~~~~~~--~vF~f~~~~ 178 (405)
.+.+.||.|+||... +..+.|-..+..++..... +-.+-+|+|+...+... .++...+-+
T Consensus 2 ~v~~llD~SgSM~~~-----------------~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~~~~~ 64 (174)
T cd01454 2 AVTLLLDLSGSMRSD-----------------RRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKIKDFD 64 (174)
T ss_pred EEEEEEECCCCCCCC-----------------cHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEecCcc
Confidence 578999999999621 2234444444444444442 55799999987631111 121110000
Q ss_pred CccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 015549 179 RFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 258 (405)
Q Consensus 179 p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv 258 (405)
. . +..+.++.+..+...|.|.+...|+.+.+...+....--++++||||.-++. ++..+.+. ..++.++++.
T Consensus 65 ~---~---~~~~~~~~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~-~~~~~~~~-~~~~~~~~~~ 136 (174)
T cd01454 65 E---S---LHERARKRLAALSPGGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDL-DYYEGNVF-ATEDALRAVI 136 (174)
T ss_pred c---c---cchhHHHHHHccCCCCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcc-cccCcchh-HHHHHHHHHH
Confidence 0 0 0112233344455678899999999999988765444567899999987753 22222221 2345566688
Q ss_pred HhcCCCcEEEEEeccCCCc
Q 015549 259 KASELPLSIVLVGVGDGPW 277 (405)
Q Consensus 259 ~AS~lPLSIIiVGVGd~~F 277 (405)
+|-+..+.+..||||+...
T Consensus 137 ~~~~~gi~v~~igig~~~~ 155 (174)
T cd01454 137 EARKLGIEVFGITIDRDAT 155 (174)
T ss_pred HHHhCCcEEEEEEecCccc
Confidence 8888899999999998653
No 16
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=98.46 E-value=1.5e-06 Score=74.95 Aligned_cols=145 Identities=17% Similarity=0.258 Sum_probs=96.8
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCcc
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~~ 181 (405)
+++++||.|+||.+.+ ...+..+++...+..++..+..+ .|-++.|+.... .++.+ .
T Consensus 1 dvv~v~D~SgSM~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~-~v~l~~f~~~~~---~~~~~------t 57 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYD-------------GNRTRIDQAKDALNELLANLPGD-RVGLVSFSDSSR---TLSPL------T 57 (172)
T ss_dssp EEEEEEE-SGGGGTTT-------------SSS-HHHHHHHHHHHHHHHHTTS-EEEEEEESTSCE---EEEEE------E
T ss_pred CEEEEEECCcccCCCC-------------CCCcHHHHHHHHHHHHHHHCCCC-EEEEEEeccccc---ccccc------c
Confidence 5799999999996421 12467788888888889888755 999999998531 12233 2
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhc
Q 015549 182 YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKAS 261 (405)
Q Consensus 182 ~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS 261 (405)
.+.+.+.++-.+..+.....|.|.+...|+.+.++.......=-++|+||||.-+. ...+++..+.
T Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~--------------~~~~~~~~~~ 123 (172)
T PF13519_consen 58 SDKDELKNALNKLSPQGMPGGGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNS--------------SDIEAAKALK 123 (172)
T ss_dssp SSHHHHHHHHHTHHHHG--SSS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHC--------------HHHHHHHHHH
T ss_pred ccHHHHHHHhhcccccccCccCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCc--------------chhHHHHHHH
Confidence 46667776666665555667889999999999999876643345568899997553 2224666677
Q ss_pred CCCcEEEEEeccCCCcc--ccccc
Q 015549 262 ELPLSIVLVGVGDGPWD--MMKEF 283 (405)
Q Consensus 262 ~lPLSIIiVGVGd~~F~--~M~~L 283 (405)
+..+.|.+||+|...-. .|++|
T Consensus 124 ~~~i~i~~v~~~~~~~~~~~l~~l 147 (172)
T PF13519_consen 124 QQGITIYTVGIGSDSDANEFLQRL 147 (172)
T ss_dssp CTTEEEEEEEES-TT-EHHHHHHH
T ss_pred HcCCeEEEEEECCCccHHHHHHHH
Confidence 88899999999986543 44444
No 17
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.40 E-value=1.7e-06 Score=79.79 Aligned_cols=160 Identities=16% Similarity=0.221 Sum_probs=95.6
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCC--C-cccccCC
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQ--D-VFSFYSG 177 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~--~-vF~f~~~ 177 (405)
.++++.||.|+||... -....+..+.|...+..++..+.++..|-+|.|+....... . +++..+-
T Consensus 21 ~~vv~vlD~SgSM~~~------------~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~ 88 (206)
T cd01456 21 PNVAIVLDNSGSMREV------------DGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCL 88 (206)
T ss_pred CcEEEEEeCCCCCcCC------------CCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCcccccccccccc
Confidence 5899999999999631 00123456677777777777787788999999998543211 1 1111010
Q ss_pred CCccCCHH-HHHHHHHhhCCcee-ecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHH
Q 015549 178 GRFCYGFE-EVLSRYREIVPNLK-LAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVD 255 (405)
Q Consensus 178 ~p~~~G~e-gVl~aYr~~l~~v~-LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~ 255 (405)
-..+.+.. .-.+...+.+..++ ..|-|+....|+.+.+..+ .+.-.++|+||||.-++. . +..+...
T Consensus 89 ~~~~~~~~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~--~~~~~~iillTDG~~~~~------~---~~~~~~~ 157 (206)
T cd01456 89 TAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD--PGRVNVVVLITDGEDTCG------P---DPCEVAR 157 (206)
T ss_pred ccccCCCCcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC--CCCcceEEEEcCCCccCC------C---CHHHHHH
Confidence 00111210 01122234455555 6789999999999988876 233357799999987641 0 1223334
Q ss_pred HHHHh--cCCCcEEEEEeccCC-Cccccccc
Q 015549 256 AIVKA--SELPLSIVLVGVGDG-PWDMMKEF 283 (405)
Q Consensus 256 aIv~A--S~lPLSIIiVGVGd~-~F~~M~~L 283 (405)
.+.+. ..-++.|.+||||.. +...|+++
T Consensus 158 ~~~~~~~~~~~i~i~~igiG~~~~~~~l~~i 188 (206)
T cd01456 158 ELAKRRTPAPPIKVNVIDFGGDADRAELEAI 188 (206)
T ss_pred HHHHhcCCCCCceEEEEEecCcccHHHHHHH
Confidence 44433 124788999999975 34445544
No 18
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.25 E-value=1.2e-05 Score=71.53 Aligned_cols=142 Identities=15% Similarity=0.215 Sum_probs=91.7
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhcccc---CCCCccceEeecCCCCCCCCcccccCCC
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVF---DEDNLIPCYGFGDASTHDQDVFSFYSGG 178 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~y---D~D~~ip~yGFGa~~~~~~~vF~f~~~~ 178 (405)
++++.+|-|+|++. ..++++...+-.++..+ .++-.|-++.|+..... +|.|+.
T Consensus 2 Dv~~vlD~S~Sm~~------------------~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~---~~~l~~-- 58 (164)
T cd01482 2 DIVFLVDGSWSIGR------------------SNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRT---EFDLNA-- 58 (164)
T ss_pred CEEEEEeCCCCcCh------------------hhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeE---EEecCC--
Confidence 68899999999952 12344555444445444 35678999999987432 344431
Q ss_pred CccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc-----CCccEEEEEEeCCccccccccccCCCChhHHHH
Q 015549 179 RFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS-----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKT 253 (405)
Q Consensus 179 p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s-----~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eT 253 (405)
....+.+++...++- ...|.|+....|+.+.+...+. ...-.++||||||.-++ +.++.
T Consensus 59 --~~~~~~l~~~l~~~~---~~~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~-----------~~~~~ 122 (164)
T cd01482 59 --YTSKEDVLAAIKNLP---YKGGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQD-----------DVELP 122 (164)
T ss_pred --CCCHHHHHHHHHhCc---CCCCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCc-----------hHHHH
Confidence 234556655544331 1478899999999888754221 23457889999998654 23344
Q ss_pred HHHHHHhcCCCcEEEEEeccCCCcccccccCC
Q 015549 254 VDAIVKASELPLSIVLVGVGDGPWDMMKEFDD 285 (405)
Q Consensus 254 i~aIv~AS~lPLSIIiVGVGd~~F~~M~~LDd 285 (405)
.+.+. +..+-|..||+|+.+-..|++|-+
T Consensus 123 a~~lk---~~gi~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01482 123 ARVLR---NLGVNVFAVGVKDADESELKMIAS 151 (164)
T ss_pred HHHHH---HCCCEEEEEecCcCCHHHHHHHhC
Confidence 44444 468899999999987777776654
No 19
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=98.25 E-value=1.2e-05 Score=73.74 Aligned_cols=156 Identities=17% Similarity=0.233 Sum_probs=90.8
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCc
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~ 180 (405)
+++++.||.|+||+.. . .+.-.+++..+...|..+..+-.+-++.|+..... +|.+.. ..
T Consensus 1 ~di~~vlD~SgSM~~~--------~-------~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~---~~~~~~--~~ 60 (198)
T cd01470 1 LNIYIALDASDSIGEE--------D-------FDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKE---IVSIRD--FN 60 (198)
T ss_pred CcEEEEEECCCCccHH--------H-------HHHHHHHHHHHHHHccccCCCceEEEEEecCCceE---EEeccc--CC
Confidence 4789999999999521 0 11224455555444444444567999999986432 344421 11
Q ss_pred cCCHHHHHHHHHhhCCcee-ecCCCChHHHHHHHHHHHHhc----C----CccEEEEEEeCCccccccccccCCCChhHH
Q 015549 181 CYGFEEVLSRYREIVPNLK-LAGPTSFAPVIEMAMSIVEQS----G----GQYHVLLIIADGQVTRSVDTVRGCLSPQEQ 251 (405)
Q Consensus 181 ~~G~egVl~aYr~~l~~v~-LsGPT~FaPVI~~ai~i~~~s----~----~~Y~VLLIITDG~Itds~d~~~~~~~~d~~ 251 (405)
-...+.++++-...-.... ..|-|+....|+++.+..... . ..-.++++||||+-++- .++ .
T Consensus 61 ~~~~~~~~~~l~~~~~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g-------~~~--~ 131 (198)
T cd01470 61 SNDADDVIKRLEDFNYDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMG-------GSP--L 131 (198)
T ss_pred CCCHHHHHHHHHhCCcccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCC-------CCh--h
Confidence 1223444443333222111 346799999999887764211 1 12378899999987641 112 3
Q ss_pred HHHHHHHHh----------cCCCcEEEEEeccCC-CcccccccCC
Q 015549 252 KTVDAIVKA----------SELPLSIVLVGVGDG-PWDMMKEFDD 285 (405)
Q Consensus 252 eTi~aIv~A----------S~lPLSIIiVGVGd~-~F~~M~~LDd 285 (405)
+.++.|.++ ....+.|..||||+. +.+.|+++=.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~i~~iGvG~~~~~~~L~~iA~ 176 (198)
T cd01470 132 PTVDKIKNLVYKNNKSDNPREDYLDVYVFGVGDDVNKEELNDLAS 176 (198)
T ss_pred HHHHHHHHHHhcccccccchhcceeEEEEecCcccCHHHHHHHhc
Confidence 334444443 334689999999974 7788887753
No 20
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=98.25 E-value=2.8e-05 Score=72.19 Aligned_cols=151 Identities=17% Similarity=0.279 Sum_probs=99.2
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHH-HHHHHHhhhccccCC---CCccceEeecCCCCCCCCcccccCC
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYE-QAISIIGKTLAVFDE---DNLIPCYGFGDASTHDQDVFSFYSG 177 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq-qAI~~Ig~vl~~yD~---D~~ip~yGFGa~~~~~~~vF~f~~~ 177 (405)
.+++.||-|.|.+. ..++ .++..+-.++..|+- +-.+-+.=|++... ..+.|+.+
T Consensus 2 Di~fllD~S~Si~~------------------~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~---~~~~~~~~ 60 (192)
T cd01473 2 DLTLILDESASIGY------------------SNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNR---DVVPFSDE 60 (192)
T ss_pred cEEEEEeCCCcccH------------------HHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCce---eEEecCcc
Confidence 47899999999852 1233 345556666666664 45788888887642 23444321
Q ss_pred CCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC----CccEEEEEEeCCccccccccccCCCChhHHHH
Q 015549 178 GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG----GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKT 253 (405)
Q Consensus 178 ~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~----~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eT 253 (405)
.-..-++++++-++..+....+|.|+....|+.+.+...... ..--|||+||||.-++. +....
T Consensus 61 --~~~~~~~l~~~i~~l~~~~~~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~----------~~~~~ 128 (192)
T cd01473 61 --ERYDKNELLKKINDLKNSYRSGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSA----------SKKEL 128 (192)
T ss_pred --cccCHHHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCc----------chhhH
Confidence 112345555554444333334688999999999988764322 12578999999987751 13445
Q ss_pred HHHHHHhcCCCcEEEEEeccCCCcccccccCC
Q 015549 254 VDAIVKASELPLSIVLVGVGDGPWDMMKEFDD 285 (405)
Q Consensus 254 i~aIv~AS~lPLSIIiVGVGd~~F~~M~~LDd 285 (405)
.++...+-+.-+-|..||||..+-..|+.+-+
T Consensus 129 ~~~a~~lk~~gV~i~~vGiG~~~~~el~~ia~ 160 (192)
T cd01473 129 QDISLLYKEENVKLLVVGVGAASENKLKLLAG 160 (192)
T ss_pred HHHHHHHHHCCCEEEEEEeccccHHHHHHhcC
Confidence 56677778899999999999987666665543
No 21
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=98.22 E-value=1.5e-05 Score=70.62 Aligned_cols=141 Identities=16% Similarity=0.282 Sum_probs=89.5
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccC---CCCccceEeecCCCCCCCCcccccCCC
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDASTHDQDVFSFYSGG 178 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---~D~~ip~yGFGa~~~~~~~vF~f~~~~ 178 (405)
++++.||-|+|+.. ..++.+...+..++..|+ .+-.+-++-|+..... ++.+..
T Consensus 2 Dvv~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~---~~~~~~-- 58 (164)
T cd01472 2 DIVFLVDGSESIGL------------------SNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRT---EFYLNT-- 58 (164)
T ss_pred CEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeE---EEecCC--
Confidence 68999999999952 123444444555555554 3458999999976432 233321
Q ss_pred CccCCHHHHHHHHHhhCCceee-cCCCChHHHHHHHHHHHHhc-----CCccEEEEEEeCCccccccccccCCCChhHHH
Q 015549 179 RFCYGFEEVLSRYREIVPNLKL-AGPTSFAPVIEMAMSIVEQS-----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQK 252 (405)
Q Consensus 179 p~~~G~egVl~aYr~~l~~v~L-sGPT~FaPVI~~ai~i~~~s-----~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~e 252 (405)
....+.+.+. +..++. +|.|+....++.|.+..... ...-.++++||||.-++ +..+
T Consensus 59 --~~~~~~~~~~----l~~l~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~-----------~~~~ 121 (164)
T cd01472 59 --YRSKDDVLEA----VKNLRYIGGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQD-----------DVEE 121 (164)
T ss_pred --CCCHHHHHHH----HHhCcCCCCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCc-----------hHHH
Confidence 1233444433 333333 78899999999999887642 23346789999996553 1222
Q ss_pred HHHHHHHhcCCCcEEEEEeccCCCcccccccCC
Q 015549 253 TVDAIVKASELPLSIVLVGVGDGPWDMMKEFDD 285 (405)
Q Consensus 253 Ti~aIv~AS~lPLSIIiVGVGd~~F~~M~~LDd 285 (405)
+..+..+..+.|..||+|+.+.+.|+.+=+
T Consensus 122 ---~~~~l~~~gv~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01472 122 ---PAVELKQAGIEVFAVGVKNADEEELKQIAS 151 (164)
T ss_pred ---HHHHHHHCCCEEEEEECCcCCHHHHHHHHC
Confidence 233333478899999999988888877643
No 22
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.20 E-value=2.1e-05 Score=70.07 Aligned_cols=140 Identities=17% Similarity=0.213 Sum_probs=83.4
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCc
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~ 180 (405)
.+++++||.|.||.... + + ..+..+.|...+..++...+ +..+-++.|++.... ++.+.
T Consensus 3 ~~vv~vlD~S~SM~~~~---~--------~-~~~r~~~a~~~~~~~~~~~~-~~~v~lv~f~~~~~~---~~~~~----- 61 (180)
T cd01467 3 RDIMIALDVSGSMLAQD---F--------V-KPSRLEAAKEVLSDFIDRRE-NDRIGLVVFAGAAFT---QAPLT----- 61 (180)
T ss_pred ceEEEEEECCccccccc---C--------C-CCCHHHHHHHHHHHHHHhCC-CCeEEEEEEcCCeee---ccCCC-----
Confidence 57999999999996421 1 0 12334555555556665554 458999999875431 22221
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHh
Q 015549 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKA 260 (405)
Q Consensus 181 ~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~A 260 (405)
.+...+.+. -+.+......|.|+...-|+.+.+...+....-.+++|||||.-+. +..++ .+.. ..+
T Consensus 62 -~~~~~~~~~-l~~l~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~------g~~~~--~~~~---~~~ 128 (180)
T cd01467 62 -LDRESLKEL-LEDIKIGLAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNA------GEIDP--ATAA---ELA 128 (180)
T ss_pred -ccHHHHHHH-HHHhhhcccCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC------CCCCH--HHHH---HHH
Confidence 122222221 1222223357889999889999888766544457889999997553 11211 2222 233
Q ss_pred cCCCcEEEEEeccC
Q 015549 261 SELPLSIVLVGVGD 274 (405)
Q Consensus 261 S~lPLSIIiVGVGd 274 (405)
.+..+-|..||||.
T Consensus 129 ~~~gi~i~~i~ig~ 142 (180)
T cd01467 129 KNKGVRIYTIGVGK 142 (180)
T ss_pred HHCCCEEEEEEecC
Confidence 45678888888887
No 23
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=98.19 E-value=1.1e-05 Score=86.64 Aligned_cols=145 Identities=21% Similarity=0.218 Sum_probs=95.2
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCc
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~ 180 (405)
.++++.||.|+||. | +..++|-..+..+|....++-.|-++.|+....... .. ..
T Consensus 272 ~~vvfvlD~SgSM~--g----------------~~i~~ak~al~~~l~~L~~~d~~~ii~F~~~~~~~~---~~----~~ 326 (596)
T TIGR03788 272 RELVFVIDTSGSMA--G----------------ESIEQAKSALLLALDQLRPGDRFNIIQFDSDVTLLF---PV----PV 326 (596)
T ss_pred ceEEEEEECCCCCC--C----------------ccHHHHHHHHHHHHHhCCCCCEEEEEEECCcceEec---cc----cc
Confidence 47999999999995 1 124666677777778888888999999998754221 11 00
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc-CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHH
Q 015549 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS-GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVK 259 (405)
Q Consensus 181 ~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s-~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~ 259 (405)
..+ ++-++...+.+..++..|.|++...|+.+.+..... .+.--.+++||||.+.+ +.++++.+..
T Consensus 327 ~~~-~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~ 393 (596)
T TIGR03788 327 PAT-AHNLARARQFVAGLQADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGN------------EDALFQLIRT 393 (596)
T ss_pred cCC-HHHHHHHHHHHhhCCCCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCC------------HHHHHHHHHH
Confidence 011 111223334455566679999999999998764222 22234568899999875 5677777765
Q ss_pred hcCCCcEEEEEeccCC-CcccccccC
Q 015549 260 ASELPLSIVLVGVGDG-PWDMMKEFD 284 (405)
Q Consensus 260 AS~lPLSIIiVGVGd~-~F~~M~~LD 284 (405)
+. -..-|..||||+. +...|+.|-
T Consensus 394 ~~-~~~ri~tvGiG~~~n~~lL~~lA 418 (596)
T TIGR03788 394 KL-GDSRLFTVGIGSAPNSYFMRKAA 418 (596)
T ss_pred hc-CCceEEEEEeCCCcCHHHHHHHH
Confidence 43 2456778899985 666676664
No 24
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=98.11 E-value=5.6e-05 Score=66.44 Aligned_cols=135 Identities=19% Similarity=0.284 Sum_probs=87.0
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCC---CCccceEeecCCCCCCCCcccccCC
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDASTHDQDVFSFYSG 177 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~---D~~ip~yGFGa~~~~~~~vF~f~~~ 177 (405)
+++++.+|.|+|+.. .++++...+..++..+.. .-.+-+..|+..... .-.|.+...
T Consensus 1 ldv~~llD~S~Sm~~-------------------~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~-~~~~~l~~~ 60 (163)
T cd01476 1 LDLLFVLDSSGSVRG-------------------KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQ-RVRFNLPKH 60 (163)
T ss_pred CCEEEEEeCCcchhh-------------------hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCce-EEEecCCCC
Confidence 468999999999841 135555556666666654 678999999885321 113344321
Q ss_pred CCccCCHHHHHHHHHhhCCcee-ecCCCChHHHHHHHHHHHHhc----CCccEEEEEEeCCccccccccccCCCChhHHH
Q 015549 178 GRFCYGFEEVLSRYREIVPNLK-LAGPTSFAPVIEMAMSIVEQS----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQK 252 (405)
Q Consensus 178 ~p~~~G~egVl~aYr~~l~~v~-LsGPT~FaPVI~~ai~i~~~s----~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~e 252 (405)
...+.++++-.. ++ .+|.|+....|+.+.+...+. .+...++++||||..++ +..+
T Consensus 61 ----~~~~~l~~~i~~----l~~~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~-----------~~~~ 121 (163)
T cd01476 61 ----NDGEELLEKVDN----LRFIGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHD-----------DPEK 121 (163)
T ss_pred ----CCHHHHHHHHHh----CccCCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCC-----------chHH
Confidence 223444443332 33 467899999999999887521 12237889999998764 1334
Q ss_pred HHHHHHHhcCCCcEEEEEeccCCC
Q 015549 253 TVDAIVKASELPLSIVLVGVGDGP 276 (405)
Q Consensus 253 Ti~aIv~AS~lPLSIIiVGVGd~~ 276 (405)
..+.+.+ ..-+.|+.||+|+..
T Consensus 122 ~~~~l~~--~~~v~v~~vg~g~~~ 143 (163)
T cd01476 122 QARILRA--VPNIETFAVGTGDPG 143 (163)
T ss_pred HHHHHhh--cCCCEEEEEECCCcc
Confidence 4556655 466889999999863
No 25
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=98.09 E-value=2.2e-05 Score=68.67 Aligned_cols=143 Identities=17% Similarity=0.277 Sum_probs=89.7
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCcc
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~~ 181 (405)
++++.||.|+||... ...-.+||+.+ ++...+...|-++.||......... + ....-
T Consensus 2 ~vvilvD~S~Sm~g~----------------~~~~k~al~~~---l~~L~~~d~fnii~f~~~~~~~~~~--~--~~~~~ 58 (155)
T PF13768_consen 2 DVVILVDTSGSMSGE----------------KELVKDALRAI---LRSLPPGDRFNIIAFGSSVRPLFPG--L--VPATE 58 (155)
T ss_pred eEEEEEeCCCCCCCc----------------HHHHHHHHHHH---HHhCCCCCEEEEEEeCCEeeEcchh--H--HHHhH
Confidence 689999999999521 12235555555 4555566699999999854321110 0 00001
Q ss_pred CCHHHHHHHHHhhCCceee-cCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHh
Q 015549 182 YGFEEVLSRYREIVPNLKL-AGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKA 260 (405)
Q Consensus 182 ~G~egVl~aYr~~l~~v~L-sGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~A 260 (405)
.+++.++ +.+..+.. .|.|+....++.|++... ..+.-..+++||||..+. ..+++.+.+.++
T Consensus 59 ~~~~~a~----~~I~~~~~~~G~t~l~~aL~~a~~~~~-~~~~~~~IilltDG~~~~-----------~~~~i~~~v~~~ 122 (155)
T PF13768_consen 59 ENRQEAL----QWIKSLEANSGGTDLLAALRAALALLQ-RPGCVRAIILLTDGQPVS-----------GEEEILDLVRRA 122 (155)
T ss_pred HHHHHHH----HHHHHhcccCCCccHHHHHHHHHHhcc-cCCCccEEEEEEeccCCC-----------CHHHHHHHHHhc
Confidence 1233332 33344566 899999999999887652 223445668999999643 246777777654
Q ss_pred cCCCcEEEEEeccC-CCcccccccC
Q 015549 261 SELPLSIVLVGVGD-GPWDMMKEFD 284 (405)
Q Consensus 261 S~lPLSIIiVGVGd-~~F~~M~~LD 284 (405)
. -.+-|..+|+|. .+...|++|=
T Consensus 123 ~-~~~~i~~~~~g~~~~~~~L~~LA 146 (155)
T PF13768_consen 123 R-GHIRIFTFGIGSDADADFLRELA 146 (155)
T ss_pred C-CCceEEEEEECChhHHHHHHHHH
Confidence 4 558888899998 5667777663
No 26
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.98 E-value=6.4e-05 Score=68.61 Aligned_cols=146 Identities=17% Similarity=0.240 Sum_probs=92.4
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhcccc---------CCCCccceEeecCCCCCCCCc
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVF---------DEDNLIPCYGFGDASTHDQDV 171 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~y---------D~D~~ip~yGFGa~~~~~~~v 171 (405)
+++++.||-|+|++. ..++.+...+-.++..+ ..+-.+-++.|+..... +
T Consensus 3 ~dvv~vlD~S~Sm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~---~ 61 (186)
T cd01480 3 VDITFVLDSSESVGL------------------QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEV---E 61 (186)
T ss_pred eeEEEEEeCCCccch------------------hhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCcee---e
Confidence 589999999999962 12344444444444444 22457899999976432 3
Q ss_pred ccccCCCCccCCHHHHHHHHHhhCCcee-ecCCCChHHHHHHHHHHHHh--cCCccEEEEEEeCCccccccccccCCCCh
Q 015549 172 FSFYSGGRFCYGFEEVLSRYREIVPNLK-LAGPTSFAPVIEMAMSIVEQ--SGGQYHVLLIIADGQVTRSVDTVRGCLSP 248 (405)
Q Consensus 172 F~f~~~~p~~~G~egVl~aYr~~l~~v~-LsGPT~FaPVI~~ai~i~~~--s~~~Y~VLLIITDG~Itds~d~~~~~~~~ 248 (405)
|.+... ....+.++ +.+..++ ..|.|+....|+.+.+.... ..+.-.++++||||.-++..
T Consensus 62 ~~l~~~---~~~~~~l~----~~i~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~--------- 125 (186)
T cd01480 62 AGFLRD---IRNYTSLK----EAVDNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSP--------- 125 (186)
T ss_pred Eecccc---cCCHHHHH----HHHHhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCc---------
Confidence 444321 12344443 3334444 47899999999999988764 22334788999999864310
Q ss_pred hHHHHHHHHHHhcCCCcEEEEEeccCCCcccccccC
Q 015549 249 QEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFD 284 (405)
Q Consensus 249 d~~eTi~aIv~AS~lPLSIIiVGVGd~~F~~M~~LD 284 (405)
.....+++.++.+..+.|..||||..+-..|+++-
T Consensus 126 -~~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA 160 (186)
T cd01480 126 -DGGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIA 160 (186)
T ss_pred -chhHHHHHHHHHHCCCEEEEEecCccchHHHHHHH
Confidence 12334555666688999999999986655555553
No 27
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.94 E-value=0.00015 Score=78.02 Aligned_cols=141 Identities=13% Similarity=0.203 Sum_probs=92.9
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCC---CccceEeecCCCCCCCCcccccCC
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDED---NLIPCYGFGDASTHDQDVFSFYSG 177 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D---~~ip~yGFGa~~~~~~~vF~f~~~ 177 (405)
+.+++.||-|+|++. .|-.++|+..+..++..++.. -.+-+..|+.... .+|.|...
T Consensus 43 lDIvFLLD~SgSMg~-----------------~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r---~vfpL~s~ 102 (576)
T PTZ00441 43 VDLYLLVDGSGSIGY-----------------HNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTT---ELIRLGSG 102 (576)
T ss_pred ceEEEEEeCCCccCC-----------------ccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCce---EEEecCCC
Confidence 679999999999962 133467777777777777542 2333467877543 24455321
Q ss_pred CCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC---CccEEEEEEeCCccccccccccCCCChhHHHHH
Q 015549 178 GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG---GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTV 254 (405)
Q Consensus 178 ~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~---~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi 254 (405)
. -...+.++.+-.++...+...|-|++...|+.+.+...+.+ ..--|+|+||||.-++ ..+++
T Consensus 103 ~--s~Dk~~aL~~I~sL~~~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns------------~~dvl 168 (576)
T PTZ00441 103 A--SKDKEQALIIVKSLRKTYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNS------------KYRAL 168 (576)
T ss_pred c--cccHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCC------------cccHH
Confidence 1 12334555555555555666799999999999988775431 2236889999998653 13455
Q ss_pred HHHHHhcCCCcEEEEEeccCC
Q 015549 255 DAIVKASELPLSIVLVGVGDG 275 (405)
Q Consensus 255 ~aIv~AS~lPLSIIiVGVGd~ 275 (405)
+++......-+-|..||||.+
T Consensus 169 eaAq~LR~~GVeI~vIGVG~g 189 (576)
T PTZ00441 169 EESRKLKDRNVKLAVIGIGQG 189 (576)
T ss_pred HHHHHHHHCCCEEEEEEeCCC
Confidence 555566677899999999974
No 28
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.94 E-value=0.00026 Score=61.72 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=78.1
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCcc
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~~ 181 (405)
.++++||.|+||... -+ -....++..++..+.. .+..+-++.|+... . ...+. .-
T Consensus 2 ~v~illD~SgSM~~~--------k~-------~~a~~~~~~l~~~~~~--~~~~v~li~F~~~~--~--~~~~~----~~ 56 (152)
T cd01462 2 PVILLVDQSGSMYGA--------PE-------EVAKAVALALLRIALA--ENRDTYLILFDSEF--Q--TKIVD----KT 56 (152)
T ss_pred CEEEEEECCCCCCCC--------HH-------HHHHHHHHHHHHHHHH--cCCcEEEEEeCCCc--e--EEecC----Cc
Confidence 478999999999521 01 1124444445554444 24478999998871 1 11111 11
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCc-cccccccccCCCChhHHHHHHHHHHh
Q 015549 182 YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQ-VTRSVDTVRGCLSPQEQKTVDAIVKA 260 (405)
Q Consensus 182 ~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~-Itds~d~~~~~~~~d~~eTi~aIv~A 260 (405)
..+..+++. +..+...|.|++.+.|+.+.+..++....=.+++|||||. -.+ ..+..++...+
T Consensus 57 ~~~~~~~~~----l~~~~~~ggT~l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~------------~~~~~~~~~~~ 120 (152)
T cd01462 57 DDLEEPVEF----LSGVQLGGGTDINKALRYALELIERRDPRKADIVLITDGYEGGV------------SDELLREVELK 120 (152)
T ss_pred ccHHHHHHH----HhcCCCCCCcCHHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC------------CHHHHHHHHHH
Confidence 234454443 3344567999999999999998876533335789999995 222 12332223333
Q ss_pred cCCCcEEEEEeccCC
Q 015549 261 SELPLSIVLVGVGDG 275 (405)
Q Consensus 261 S~lPLSIIiVGVGd~ 275 (405)
....+=|..||||+.
T Consensus 121 ~~~~~~v~~~~~g~~ 135 (152)
T cd01462 121 RSRVARFVALALGDH 135 (152)
T ss_pred HhcCcEEEEEEecCC
Confidence 344566777777763
No 29
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=97.88 E-value=0.00017 Score=66.50 Aligned_cols=139 Identities=13% Similarity=0.173 Sum_probs=89.6
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCC---CCccceEeecCCCCCCCCcccccCC
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDASTHDQDVFSFYSG 177 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~---D~~ip~yGFGa~~~~~~~vF~f~~~ 177 (405)
.+++|+||.|.||... +-.+|-.++|-..+..++..+.+ ...+-++.|++...+. +.+|+.+
T Consensus 4 r~ivi~lD~S~SM~a~-------------D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~--~~PlT~D 68 (183)
T cd01453 4 RHLIIVIDCSRSMEEQ-------------DLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEK--LTDLTGN 68 (183)
T ss_pred eEEEEEEECcHHHhcC-------------CCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEE--EECCCCC
Confidence 4799999999999632 11368889999999999987733 4578899996544332 2233221
Q ss_pred CCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCC--ccEEEEEEeCCccccccccccCCCChhHHHHHH
Q 015549 178 GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGG--QYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVD 255 (405)
Q Consensus 178 ~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~--~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~ 255 (405)
.+.++..-+.. +...|-|++...|+.|.+..++... +=.||||++||.-.+ ..+..+
T Consensus 69 ------~~~~~~~L~~~---~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~------------~~~~~~ 127 (183)
T cd01453 69 ------PRKHIQALKTA---RECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCD------------PGNIYE 127 (183)
T ss_pred ------HHHHHHHhhcc---cCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCC------------hhhHHH
Confidence 22333332222 2345779999999999988865322 224788899986543 112223
Q ss_pred HHHHhcCCCcEEEEEeccCC
Q 015549 256 AIVKASELPLSIVLVGVGDG 275 (405)
Q Consensus 256 aIv~AS~lPLSIIiVGVGd~ 275 (405)
++..+.+..+-|-+||||.+
T Consensus 128 ~~~~l~~~~I~v~~IgiG~~ 147 (183)
T cd01453 128 TIDKLKKENIRVSVIGLSAE 147 (183)
T ss_pred HHHHHHHcCcEEEEEEechH
Confidence 44455566788888999853
No 30
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.86 E-value=7.3e-05 Score=65.23 Aligned_cols=148 Identities=15% Similarity=0.220 Sum_probs=87.9
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCcc
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~~ 181 (405)
++++.||-|+|++.. ..+...++|..+..-+...+..-.+-+.-||.... .+|+|+..
T Consensus 1 DivflvD~S~sm~~~---------------~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~---~~~~~~~~---- 58 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGD---------------NFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSAR---VLFSLTDY---- 58 (178)
T ss_dssp EEEEEEE-STTSCHH---------------HHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEE---EEEETTSH----
T ss_pred CEEEEEeCCCCCchH---------------HHHHHHHHHHHHHHhhhccccccccceeeeecccc---cccccccc----
Confidence 478999999999631 01223444555544444667778899999998654 34455321
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc-----CCccEEEEEEeCCccccccccccCCCChhHHHHHHH
Q 015549 182 YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS-----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDA 256 (405)
Q Consensus 182 ~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s-----~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~a 256 (405)
...+.+++.- ........|.|+.+..|+.|.+..... .....||++||||..++.. ........
T Consensus 59 ~~~~~~~~~i--~~~~~~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~---------~~~~~~~~ 127 (178)
T PF00092_consen 59 QSKNDLLNAI--NDSIPSSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSD---------SPSEEAAN 127 (178)
T ss_dssp SSHHHHHHHH--HTTGGCCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHS---------GHHHHHHH
T ss_pred cccccccccc--cccccccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCc---------chHHHHHH
Confidence 2344444432 123345679999999999999986543 4567899999999988631 12222333
Q ss_pred HHHhcCCCcEEEEEeccCCCcccccccC
Q 015549 257 IVKASELPLSIVLVGVGDGPWDMMKEFD 284 (405)
Q Consensus 257 Iv~AS~lPLSIIiVGVGd~~F~~M~~LD 284 (405)
+.+. .-+.++.||++..+-..|+.|-
T Consensus 128 ~~~~--~~i~~~~ig~~~~~~~~l~~la 153 (178)
T PF00092_consen 128 LKKS--NGIKVIAIGIDNADNEELRELA 153 (178)
T ss_dssp HHHH--CTEEEEEEEESCCHHHHHHHHS
T ss_pred HHHh--cCcEEEEEecCcCCHHHHHHHh
Confidence 3322 4555555555345555555553
No 31
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=97.80 E-value=0.00014 Score=66.05 Aligned_cols=146 Identities=15% Similarity=0.197 Sum_probs=87.6
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccC-CCCccceEeecCCCCCCCCcccccCCCC
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD-EDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD-~D~~ip~yGFGa~~~~~~~vF~f~~~~p 179 (405)
+++++.||-|+|++.. +.+++..+-.++..|+ .+-.+-++.|+.... .+|+|+...
T Consensus 5 ~Dvv~llD~SgSm~~~-------------------~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~---~~~~l~~~~- 61 (185)
T cd01474 5 FDLYFVLDKSGSVAAN-------------------WIEIYDFVEQLVDRFNSPGLRFSFITFSTRAT---KILPLTDDS- 61 (185)
T ss_pred eeEEEEEeCcCchhhh-------------------HHHHHHHHHHHHHHcCCCCcEEEEEEecCCce---EEEeccccH-
Confidence 5799999999999521 1122233333333443 356899999987642 245554221
Q ss_pred ccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHh--cCCcc--EEEEEEeCCccccccccccCCCChhHHHHHH
Q 015549 180 FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQ--SGGQY--HVLLIIADGQVTRSVDTVRGCLSPQEQKTVD 255 (405)
Q Consensus 180 ~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~--s~~~Y--~VLLIITDG~Itds~d~~~~~~~~d~~eTi~ 255 (405)
+.+.++.. .+..+...|.|+...-|+.|.+.+.. .++.. .++++||||.-++.. ...+.+
T Consensus 62 -----~~~~~~l~-~l~~~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~----------~~~~~~ 125 (185)
T cd01474 62 -----SAIIKGLE-VLKKVTPSGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNG----------HKYPEH 125 (185)
T ss_pred -----HHHHHHHH-HHhccCCCCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCC----------CcchHH
Confidence 12222211 13444456899999999999877632 22222 678999999875310 112233
Q ss_pred HHHHhcCCCcEEEEEeccCCCcccccccCC
Q 015549 256 AIVKASELPLSIVLVGVGDGPWDMMKEFDD 285 (405)
Q Consensus 256 aIv~AS~lPLSIIiVGVGd~~F~~M~~LDd 285 (405)
+...+-+.-+-|..||||+.+...|+.+=+
T Consensus 126 ~a~~l~~~gv~i~~vgv~~~~~~~L~~iA~ 155 (185)
T cd01474 126 EAKLSRKLGAIVYCVGVTDFLKSQLINIAD 155 (185)
T ss_pred HHHHHHHcCCEEEEEeechhhHHHHHHHhC
Confidence 333444567889999998888777777743
No 32
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.78 E-value=0.00022 Score=66.99 Aligned_cols=142 Identities=16% Similarity=0.231 Sum_probs=91.5
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCC---CCccceEeecCCCCCCCCcccccCC
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDASTHDQDVFSFYSG 177 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~---D~~ip~yGFGa~~~~~~~vF~f~~~ 177 (405)
+.+++.||-|+|++ ...++++...+..++..++. .-.+-++.|+.... .+|.|+.
T Consensus 3 ~DlvfllD~S~Sm~------------------~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~---~~~~l~~- 60 (224)
T cd01475 3 TDLVFLIDSSRSVR------------------PENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVK---QEFPLGR- 60 (224)
T ss_pred ccEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCcee---EEecccc-
Confidence 47899999999985 12467777778878887764 34899999998753 2456642
Q ss_pred CCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHH-h-c---CCc---cEEEEEEeCCccccccccccCCCChh
Q 015549 178 GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVE-Q-S---GGQ---YHVLLIIADGQVTRSVDTVRGCLSPQ 249 (405)
Q Consensus 178 ~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~-~-s---~~~---Y~VLLIITDG~Itds~d~~~~~~~~d 249 (405)
....+++.++-..+ .. +.|.|+-...|+.+.+.+- + . .+. -.|+|+||||.-.+ +
T Consensus 61 ---~~~~~~l~~~i~~i-~~--~~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~-----------~ 123 (224)
T cd01475 61 ---FKSKADLKRAVRRM-EY--LETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQD-----------D 123 (224)
T ss_pred ---cCCHHHHHHHHHhC-cC--CCCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcc-----------c
Confidence 12234554443322 21 3567877777777776531 1 1 111 47889999998654 2
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeccCCCcccccccC
Q 015549 250 EQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFD 284 (405)
Q Consensus 250 ~~eTi~aIv~AS~lPLSIIiVGVGd~~F~~M~~LD 284 (405)
..+..+.+ -..-+.|..||||+.+...|+++=
T Consensus 124 ~~~~a~~l---k~~gv~i~~VgvG~~~~~~L~~ia 155 (224)
T cd01475 124 VSEVAAKA---RALGIEMFAVGVGRADEEELREIA 155 (224)
T ss_pred HHHHHHHH---HHCCcEEEEEeCCcCCHHHHHHHh
Confidence 33434443 356789999999997766666553
No 33
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=97.77 E-value=0.00046 Score=62.45 Aligned_cols=145 Identities=17% Similarity=0.232 Sum_probs=88.7
Q ss_pred eEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhcc-ccCCCCccceEeecCCCCCCCCcccccCCCCcc
Q 015549 103 LIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLA-VFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (405)
Q Consensus 103 liVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~-~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~~ 181 (405)
+++.||.|+||.. .+..+.|...+..++. .+..+..+-++.|.....+ .++.+ .
T Consensus 3 v~lvlD~SgSM~~-----------------~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~--~~~~~------t 57 (178)
T cd01451 3 VIFVVDASGSMAA-----------------RHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAE--VLLPP------T 57 (178)
T ss_pred EEEEEECCccCCC-----------------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCce--EEeCC------C
Confidence 5789999999951 1234566666555553 3445668999999764211 12222 1
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHH-hc--CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 015549 182 YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVE-QS--GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 258 (405)
Q Consensus 182 ~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~-~s--~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv 258 (405)
.+.+.+. +.+..+...|-|++..-|+.+.+..+ +. .+.-.++++||||.-+... ++......+++.
T Consensus 58 ~~~~~~~----~~l~~l~~~G~T~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~-------~~~~~~~~~~~~ 126 (178)
T cd01451 58 RSVELAK----RRLARLPTGGGTPLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGP-------DPTADRALAAAR 126 (178)
T ss_pred CCHHHHH----HHHHhCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCC-------CchhHHHHHHHH
Confidence 2334443 23444567899999999999998872 22 1223678999999866311 111112245555
Q ss_pred HhcCCCcEEEEEeccCCC--ccccccc
Q 015549 259 KASELPLSIVLVGVGDGP--WDMMKEF 283 (405)
Q Consensus 259 ~AS~lPLSIIiVGVGd~~--F~~M~~L 283 (405)
++....+.|+.||+|... -+.|++|
T Consensus 127 ~l~~~gi~v~~I~~~~~~~~~~~l~~i 153 (178)
T cd01451 127 KLRARGISALVIDTEGRPVRRGLAKDL 153 (178)
T ss_pred HHHhcCCcEEEEeCCCCccCccHHHHH
Confidence 666778889999998753 3345555
No 34
>PRK13685 hypothetical protein; Provisional
Probab=97.75 E-value=0.00027 Score=70.59 Aligned_cols=143 Identities=16% Similarity=0.148 Sum_probs=92.3
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCc
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~ 180 (405)
.+++++||.|+||... +..+|..+.|-..+..++..+.++..+-++.|++...- +..+.
T Consensus 89 ~~vvlvlD~S~SM~~~-------------D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~---~~p~t----- 147 (326)
T PRK13685 89 AVVMLVIDVSQSMRAT-------------DVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATV---LVSPT----- 147 (326)
T ss_pred ceEEEEEECCccccCC-------------CCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceee---cCCCC-----
Confidence 4689999999999632 11357788888888888988877778999999986431 11221
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHh--------cCCccEEEEEEeCCccccccccccCCCChhHHH
Q 015549 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQ--------SGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQK 252 (405)
Q Consensus 181 ~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~--------s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~e 252 (405)
...+.+ +..+..+...+-|+...-|..+.+.+++ .+..--++|+||||.-+...+ +.+...
T Consensus 148 -~d~~~l----~~~l~~l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~------~~~~~~ 216 (326)
T PRK13685 148 -TNREAT----KNAIDKLQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTN------PDNPRG 216 (326)
T ss_pred -CCHHHH----HHHHHhCCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCC------CCCccc
Confidence 223332 2334445566778888888888887653 111234568999997553110 000111
Q ss_pred HHHHHHHhcCCCcEEEEEeccCC
Q 015549 253 TVDAIVKASELPLSIVLVGVGDG 275 (405)
Q Consensus 253 Ti~aIv~AS~lPLSIIiVGVGd~ 275 (405)
..++...|.+..+.|-.||||..
T Consensus 217 ~~~aa~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 217 AYTAARTAKDQGVPISTISFGTP 239 (326)
T ss_pred HHHHHHHHHHcCCeEEEEEECCC
Confidence 23455666777888888999873
No 35
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=97.65 E-value=0.00061 Score=63.70 Aligned_cols=147 Identities=9% Similarity=0.140 Sum_probs=97.5
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCC---------CCccceEeecCCCCCCCCc
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---------DNLIPCYGFGDASTHDQDV 171 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~---------D~~ip~yGFGa~~~~~~~v 171 (405)
+.++++||-|+|++. +.++++..-|..++..++. .-.+-+.-|+..... .
T Consensus 20 ~DivfvlD~S~Sm~~------------------~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~---~ 78 (193)
T cd01477 20 LDIVFVVDNSKGMTQ------------------GGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATV---V 78 (193)
T ss_pred eeEEEEEeCCCCcch------------------hhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEE---E
Confidence 568999999999951 2367777777777777665 257888888875432 3
Q ss_pred ccccCCCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc-----CCccEEEEEEeCCccccccccccCCC
Q 015549 172 FSFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS-----GGQYHVLLIIADGQVTRSVDTVRGCL 246 (405)
Q Consensus 172 F~f~~~~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s-----~~~Y~VLLIITDG~Itds~d~~~~~~ 246 (405)
|.|+ .....++++++....+..+...|.|+...-|+.|.+..... .+.--|+++||||.-...
T Consensus 79 ~~L~----d~~~~~~~~~ai~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~-------- 146 (193)
T cd01477 79 ADLN----DLQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEG-------- 146 (193)
T ss_pred Eecc----cccCHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCC--------
Confidence 4552 23456778777776555555567899999999998887642 123577899999854321
Q ss_pred ChhHHHHHHHHHHhcCCCcEEEEEeccCC-Cccccccc
Q 015549 247 SPQEQKTVDAIVKASELPLSIVLVGVGDG-PWDMMKEF 283 (405)
Q Consensus 247 ~~d~~eTi~aIv~AS~lPLSIIiVGVGd~-~F~~M~~L 283 (405)
.....++..++.+..+-|.-||||.+ +=..|++|
T Consensus 147 ---~~~~~~~a~~l~~~GI~i~tVGiG~~~d~~~~~~L 181 (193)
T cd01477 147 ---SNDPRPIAARLKSTGIAIITVAFTQDESSNLLDKL 181 (193)
T ss_pred ---CCCHHHHHHHHHHCCCEEEEEEeCCCCCHHHHHHH
Confidence 01122334445577999999999984 22235555
No 36
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=97.63 E-value=0.00026 Score=62.08 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=79.8
Q ss_pred eEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCccC
Q 015549 103 LIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFCY 182 (405)
Q Consensus 103 liVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~~~ 182 (405)
++||||-|+|+.. ....+++..|..+++.+ ...+-++=|-++......+ .
T Consensus 1 i~vaiDtSGSis~------------------~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~----------~ 50 (126)
T PF09967_consen 1 IVVAIDTSGSISD------------------EELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVF----------R 50 (126)
T ss_pred CEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEE----------e
Confidence 5799999999942 35688899999999999 4458888887766533222 1
Q ss_pred CHHHHHHHHHhhCCcee--ecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHh
Q 015549 183 GFEEVLSRYREIVPNLK--LAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKA 260 (405)
Q Consensus 183 G~egVl~aYr~~l~~v~--LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~A 260 (405)
.. ...+..++ =.|.|+|.|+++.+.+. .....++++||||..... ..+
T Consensus 51 ~~-------~~~~~~~~~~GgGGTdf~pvf~~~~~~----~~~~~~vi~fTDg~~~~~-------------------~~~ 100 (126)
T PF09967_consen 51 SL-------EDELRDIKLKGGGGTDFRPVFEYLEEN----RPRPSVVIYFTDGEGWPP-------------------EEA 100 (126)
T ss_pred cc-------cccccccccCCCCCCcchHHHHHHHhc----CCCCCEEEEEeCCCCCCC-------------------CCC
Confidence 10 11122222 24789999999998654 334577889999987531 112
Q ss_pred cCCCcEEEEEe--ccCCCccccccc
Q 015549 261 SELPLSIVLVG--VGDGPWDMMKEF 283 (405)
Q Consensus 261 S~lPLSIIiVG--VGd~~F~~M~~L 283 (405)
=.+|+=|++.| -...||+..-+|
T Consensus 101 P~~~vlWvl~~~~~~~~P~G~vv~l 125 (126)
T PF09967_consen 101 PPYPVLWVLPGNRNPKAPFGRVVRL 125 (126)
T ss_pred CCCcEEEEEeCCCCCCCCCEEEEEe
Confidence 37899999999 223456655444
No 37
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=97.62 E-value=0.00065 Score=61.64 Aligned_cols=135 Identities=19% Similarity=0.250 Sum_probs=91.2
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCC---CCccceEeecCCCCCCCCcccccCC
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDASTHDQDVFSFYSG 177 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~---D~~ip~yGFGa~~~~~~~vF~f~~~ 177 (405)
+.+++.||-|+|.+ +..++++..-+..++..++. .-.+-+..|+.... ..|.|.
T Consensus 1 ~Di~fvlD~S~S~~------------------~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~---~~~~l~-- 57 (177)
T cd01469 1 MDIVFVLDGSGSIY------------------PDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFR---TEFTLN-- 57 (177)
T ss_pred CcEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCcee---EEEecC--
Confidence 35889999999984 23467788888888888876 45888999988642 234553
Q ss_pred CCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHH--Hhc---CCccEEEEEEeCCccccccccccCCCChhHHH
Q 015549 178 GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIV--EQS---GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQK 252 (405)
Q Consensus 178 ~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~--~~s---~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~e 252 (405)
+ ....+.++++=+. ++ .+.|.|+....|+.|.+.. ... .+.-.|+|+||||.-++.. .
T Consensus 58 ~--~~~~~~~~~~i~~-~~--~~~g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~------------~ 120 (177)
T cd01469 58 E--YRTKEEPLSLVKH-IS--QLLGLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDP------------L 120 (177)
T ss_pred c--cCCHHHHHHHHHh-Cc--cCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCcc------------c
Confidence 1 2234455544332 22 2567899999999998875 222 1345788999999987631 1
Q ss_pred HHHHHHHhcCCCcEEEEEeccCC
Q 015549 253 TVDAIVKASELPLSIVLVGVGDG 275 (405)
Q Consensus 253 Ti~aIv~AS~lPLSIIiVGVGd~ 275 (405)
+.+++..+-..-+-|.-||||+.
T Consensus 121 ~~~~~~~~k~~gv~v~~Vgvg~~ 143 (177)
T cd01469 121 LKDVIPQAEREGIIRYAIGVGGH 143 (177)
T ss_pred cHHHHHHHHHCCcEEEEEEeccc
Confidence 23445555568899999999984
No 38
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=97.62 E-value=0.0008 Score=66.47 Aligned_cols=138 Identities=20% Similarity=0.312 Sum_probs=90.7
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCc
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~ 180 (405)
.++++|||-|+||...+ ..++..+ |+..|.+.+..... +.+-+.+||.... .+.+|+ ++
T Consensus 61 ~qIvlaID~S~SM~~~~-------------~~~~ale-ak~lIs~al~~Le~-g~vgVv~Fg~~~~---~v~Plt--~d- 119 (266)
T cd01460 61 YQILIAIDDSKSMSENN-------------SKKLALE-SLCLVSKALTLLEV-GQLGVCSFGEDVQ---ILHPFD--EQ- 119 (266)
T ss_pred ceEEEEEecchhccccc-------------ccccHHH-HHHHHHHHHHhCcC-CcEEEEEeCCCce---EeCCCC--CC-
Confidence 56899999999996421 1245555 88888888877775 6899999998642 122332 11
Q ss_pred cCCHHHHHHHHHhhCCceeec-CCCChHHHHHHHHHHHHhcC-----C-ccEEEEEEeCCccccccccccCCCChhHHHH
Q 015549 181 CYGFEEVLSRYREIVPNLKLA-GPTSFAPVIEMAMSIVEQSG-----G-QYHVLLIIADGQVTRSVDTVRGCLSPQEQKT 253 (405)
Q Consensus 181 ~~G~egVl~aYr~~l~~v~Ls-GPT~FaPVI~~ai~i~~~s~-----~-~Y~VLLIITDG~Itds~d~~~~~~~~d~~eT 253 (405)
... + +.-+++....+. +-|+.+..|+.+++..++.. + .--++|||+||.-.+. +...
T Consensus 120 ~~~-~----a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~-----------e~~~ 183 (266)
T cd01460 120 FSS-Q----SGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFS-----------EGAQ 183 (266)
T ss_pred chh-h----HHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccC-----------ccHH
Confidence 111 1 112233322222 45999999999999876541 1 1278899999983321 2333
Q ss_pred HHHHHHhcCCCcEEEEEeccCC
Q 015549 254 VDAIVKASELPLSIVLVGVGDG 275 (405)
Q Consensus 254 i~aIv~AS~lPLSIIiVGVGd~ 275 (405)
..++.+|.+..+.+++|||=+.
T Consensus 184 ~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 184 KVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred HHHHHHHHHcCCeEEEEEEcCC
Confidence 3558888899999999999765
No 39
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=97.37 E-value=0.0057 Score=57.29 Aligned_cols=162 Identities=12% Similarity=0.212 Sum_probs=99.9
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccc---cCCCCccceEeecCCCCCC----CCcccc
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV---FDEDNLIPCYGFGDASTHD----QDVFSF 174 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~---yD~D~~ip~yGFGa~~~~~----~~vF~f 174 (405)
.++++||.|.||... - .+..++..+.|+..+..+++. ......+-++.||...+.. .+|+.+
T Consensus 3 ~ivf~iDvS~SM~~~----~-------~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~ 71 (218)
T cd01458 3 SVVFLVDVSPSMFES----K-------DGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVL 71 (218)
T ss_pred EEEEEEeCCHHHcCC----C-------CCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEe
Confidence 478999999999621 0 011257889999999999997 6666799999999875432 234333
Q ss_pred cCCCCccCCHHHHHHHHHhhCCcee--------ecCCCChHHHHHHHHHHHHhcC-Ccc-EEEEEEeCCccccccccccC
Q 015549 175 YSGGRFCYGFEEVLSRYREIVPNLK--------LAGPTSFAPVIEMAMSIVEQSG-GQY-HVLLIIADGQVTRSVDTVRG 244 (405)
Q Consensus 175 ~~~~p~~~G~egVl~aYr~~l~~v~--------LsGPT~FaPVI~~ai~i~~~s~-~~Y-~VLLIITDG~Itds~d~~~~ 244 (405)
.|-+ .... +.++...+.+..-. -.+.|.+..+|..+.++..+.. ... -.+++||||.=.- +
T Consensus 72 ~~l~--~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~------~ 142 (218)
T cd01458 72 LDLD--TPGA-ERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPH------G 142 (218)
T ss_pred ecCC--CCCH-HHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCC------C
Confidence 3211 1122 23334444332211 2457899999999998877521 112 4578999996320 0
Q ss_pred CCChhHHHHHHHHHHhcCCCcEEEEEeccCCC--ccccccc
Q 015549 245 CLSPQEQKTVDAIVKASELPLSIVLVGVGDGP--WDMMKEF 283 (405)
Q Consensus 245 ~~~~d~~eTi~aIv~AS~lPLSIIiVGVGd~~--F~~M~~L 283 (405)
.=.....+..+.+.+..+.-+.|.+||||..+ |+..+..
T Consensus 143 ~~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~~~~f~~~~fy 183 (218)
T cd01458 143 GDSIKDSQAAVKAEDLKDKGIELELFPLSSPGKKFDVSKFY 183 (218)
T ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCCCCCCChhHHH
Confidence 00001344456666677778999999998754 5544433
No 40
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.34 E-value=0.0026 Score=68.99 Aligned_cols=159 Identities=14% Similarity=0.211 Sum_probs=100.3
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhc-cccCCCCccceEeecCCCCCCCCcccccCCCC
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTL-AVFDEDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl-~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p 179 (405)
..++++||.|+||.- +....|-..+..+| ..|-..-.+-++.|+..... .++.. .
T Consensus 402 ~~vvfvvD~SGSM~~------------------~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~--~~lpp--T-- 457 (584)
T PRK13406 402 TTTIFVVDASGSAAL------------------HRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAE--LLLPP--T-- 457 (584)
T ss_pred ccEEEEEECCCCCcH------------------hHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCcee--EEcCC--C--
Confidence 568999999999931 22344445555545 34666668999999654221 11121 1
Q ss_pred ccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc--CCccEEEEEEeCCccccccccccCCCChhHHHHHHHH
Q 015549 180 FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS--GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAI 257 (405)
Q Consensus 180 ~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s--~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aI 257 (405)
..++.+ ++.+..+.-+|-|.++.-|..+.+.+++. .+.-.++|+||||..+...+...|. .....+...+.
T Consensus 458 --~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~-~~~~~~~~~~a 530 (584)
T PRK13406 458 --RSLVRA----KRSLAGLPGGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGR-AQAEEDALAAA 530 (584)
T ss_pred --cCHHHH----HHHHhcCCCCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccc-cchhhHHHHHH
Confidence 234443 34455667789999999999999887654 2334678999999976432211111 11234455666
Q ss_pred HHhcCCCcEEEEEeccCCCcccccccCCCCCCc
Q 015549 258 VKASELPLSIVLVGVGDGPWDMMKEFDDNIPAR 290 (405)
Q Consensus 258 v~AS~lPLSIIiVGVGd~~F~~M~~LDd~l~~R 290 (405)
..+...-+.+++|++|......|++|=+.+.++
T Consensus 531 ~~~~~~gi~~~vId~g~~~~~~~~~LA~~~gg~ 563 (584)
T PRK13406 531 RALRAAGLPALVIDTSPRPQPQARALAEAMGAR 563 (584)
T ss_pred HHHHhcCCeEEEEecCCCCcHHHHHHHHhcCCe
Confidence 666677789999999988777777775444333
No 41
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.33 E-value=0.0031 Score=68.34 Aligned_cols=158 Identities=14% Similarity=0.166 Sum_probs=93.1
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccc-cCCCCccceEeecCCCCCCCCcccccCCCC
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV-FDEDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~-yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p 179 (405)
..++++||.|+||.. +..+.|-..+..++.. |-....+-++.|+..... .++.+
T Consensus 408 ~~v~fvvD~SGSM~~------------------~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~--~~lp~----- 462 (589)
T TIGR02031 408 RLLIFVVDASGSAAV------------------ARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAE--VLLPP----- 462 (589)
T ss_pred ceEEEEEECCCCCCh------------------HHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCce--EECCC-----
Confidence 347899999999941 2345555566665543 433347999999754311 12222
Q ss_pred ccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC--CccEEEEEEeCCccccccccccCCCCh---hH-HHH
Q 015549 180 FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG--GQYHVLLIIADGQVTRSVDTVRGCLSP---QE-QKT 253 (405)
Q Consensus 180 ~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~--~~Y~VLLIITDG~Itds~d~~~~~~~~---d~-~eT 253 (405)
-.+.+.+ ++.+..+..+|.|.++.-|..+.+.+++.. +.-.++|+||||.-+-.++.......+ +. ++.
T Consensus 463 -t~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~ 537 (589)
T TIGR02031 463 -SRSVEQA----KRRLDVLPGGGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEA 537 (589)
T ss_pred -CCCHHHH----HHHHhcCCCCCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHH
Confidence 2244443 345667778999999999999999886532 223577999999865322110000010 01 122
Q ss_pred HHHHHHhcCCCcEEEEEeccCCCc--ccccccCCCCC
Q 015549 254 VDAIVKASELPLSIVLVGVGDGPW--DMMKEFDDNIP 288 (405)
Q Consensus 254 i~aIv~AS~lPLSIIiVGVGd~~F--~~M~~LDd~l~ 288 (405)
..+..+..+..+.+++||+|.+.. +.|++|=+.+.
T Consensus 538 ~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA~~~~ 574 (589)
T TIGR02031 538 LALARKIREAGMPALVIDTAMRFVSTGFAQKLARKMG 574 (589)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCCccchHHHHHHHhcC
Confidence 222333345678999999998643 33666644333
No 42
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.20 E-value=0.0044 Score=56.16 Aligned_cols=141 Identities=13% Similarity=0.216 Sum_probs=90.4
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccC---CCCccceEeecCCCCCCCCcccccCCC
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDASTHDQDVFSFYSGG 178 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---~D~~ip~yGFGa~~~~~~~vF~f~~~~ 178 (405)
.+++.||-|+|.+ ...++++..-|..++..|+ +.-.+-+.-|+.... ..|.|+-
T Consensus 2 DivfllD~S~Si~------------------~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~---~~~~l~~-- 58 (165)
T cd01481 2 DIVFLIDGSDNVG------------------SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPR---PEFYLNT-- 58 (165)
T ss_pred CEEEEEeCCCCcC------------------HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCee---EEEeccc--
Confidence 4788999998875 2346777777778888777 456788888987643 2455542
Q ss_pred CccCCHHHHHHHHHhhCCceeecC-CCChHHHHHHHHHHHH-hc------CCccEEEEEEeCCccccccccccCCCChhH
Q 015549 179 RFCYGFEEVLSRYREIVPNLKLAG-PTSFAPVIEMAMSIVE-QS------GGQYHVLLIIADGQVTRSVDTVRGCLSPQE 250 (405)
Q Consensus 179 p~~~G~egVl~aYr~~l~~v~LsG-PT~FaPVI~~ai~i~~-~s------~~~Y~VLLIITDG~Itds~d~~~~~~~~d~ 250 (405)
....++++++-.++ +. ..| .|+-...|+.+.+.+- .. .+--.||++||||.-+| +.
T Consensus 59 --~~~~~~l~~~i~~i-~~--~~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d-----------~~ 122 (165)
T cd01481 59 --HSTKADVLGAVRRL-RL--RGGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQD-----------DV 122 (165)
T ss_pred --cCCHHHHHHHHHhc-cc--CCCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcc-----------hH
Confidence 12355666554432 21 245 4788888888876642 11 12357899999998765 23
Q ss_pred HHHHHHHHHhcCCCcEEEEEeccCCCcccccccC
Q 015549 251 QKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFD 284 (405)
Q Consensus 251 ~eTi~aIv~AS~lPLSIIiVGVGd~~F~~M~~LD 284 (405)
.+..+.+.+ .-+-|+.||+|..+.+.|+.+-
T Consensus 123 ~~~a~~lr~---~gv~i~~vG~~~~~~~eL~~ia 153 (165)
T cd01481 123 ERPAVALKR---AGIVPFAIGARNADLAELQQIA 153 (165)
T ss_pred HHHHHHHHH---CCcEEEEEeCCcCCHHHHHHHh
Confidence 444455554 4577888888866666555554
No 43
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=97.14 E-value=0.0051 Score=57.84 Aligned_cols=161 Identities=11% Similarity=0.150 Sum_probs=103.1
Q ss_pred eEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCC---CCccceEeecCCCCCCCCcccccCCCC
Q 015549 103 LIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDASTHDQDVFSFYSGGR 179 (405)
Q Consensus 103 liVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~---D~~ip~yGFGa~~~~~~~vF~f~~~~p 179 (405)
.+|+||.|.||... +-.+|-++.+...+..++..|-+ ...+-+..|+++.... +.+++.
T Consensus 6 ~vi~lD~S~sM~a~-------------D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v--~~plT~--- 67 (187)
T cd01452 6 TMICIDNSEYMRNG-------------DYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEV--LVTLTN--- 67 (187)
T ss_pred EEEEEECCHHHHcC-------------CCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEE--EECCCC---
Confidence 78999999999532 12478999999998888744433 4578888888844321 112221
Q ss_pred ccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC---CccEEEEEEeCCccccccccccCCCChhHHHHHHH
Q 015549 180 FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG---GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDA 256 (405)
Q Consensus 180 ~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~---~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~a 256 (405)
....++. .+..+.+.|.+++...|+.|....+... ..=-|++|++++.-.| .....++
T Consensus 68 ---D~~~~~~----~L~~i~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d------------~~~i~~~ 128 (187)
T cd01452 68 ---DQGKILS----KLHDVQPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEED------------EKDLVKL 128 (187)
T ss_pred ---CHHHHHH----HHHhCCCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCC------------HHHHHHH
Confidence 2333433 3334556799999999999988775432 2225567776664443 4556677
Q ss_pred HHHhcCCCcEEEEEeccCC--CcccccccCCCCCCccccceecccchh
Q 015549 257 IVKASELPLSIVLVGVGDG--PWDMMKEFDDNIPARAFDNFQFVNFTE 302 (405)
Q Consensus 257 Iv~AS~lPLSIIiVGVGd~--~F~~M~~LDd~l~~R~rDNvQFV~f~d 302 (405)
+.++.+..+.|-+||+|+. +=+.|+.|-+.+.. -||-+||....
T Consensus 129 ~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~--~~~s~~~~~~~ 174 (187)
T cd01452 129 AKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNG--KDGSHLVSVPP 174 (187)
T ss_pred HHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcC--CCCceEEEeCC
Confidence 7778888999999999975 33444444333322 37788876543
No 44
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=97.10 E-value=0.006 Score=59.41 Aligned_cols=134 Identities=17% Similarity=0.170 Sum_probs=78.4
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccc-cCCCCccceEeecCCCCCCCCcccccCCCC
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV-FDEDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~-yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p 179 (405)
+++++.||.|+||.. ..+.+...+..++.. +..+..+-++.|+..... ++.|.
T Consensus 54 ~~vvlvlD~SgSM~~-------------------~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~---~~~~t---- 107 (296)
T TIGR03436 54 LTVGLVIDTSGSMRN-------------------DLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRL---LQDFT---- 107 (296)
T ss_pred ceEEEEEECCCCchH-------------------HHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeE---eecCC----
Confidence 689999999999941 135556666666655 566789999999986432 22232
Q ss_pred ccCCHHHHHHHHHhhCC-----------ceeecCCCChHHHHHHHH-HHHHhcC----CccEEEEEEeCCcccccccccc
Q 015549 180 FCYGFEEVLSRYREIVP-----------NLKLAGPTSFAPVIEMAM-SIVEQSG----GQYHVLLIIADGQVTRSVDTVR 243 (405)
Q Consensus 180 ~~~G~egVl~aYr~~l~-----------~v~LsGPT~FaPVI~~ai-~i~~~s~----~~Y~VLLIITDG~Itds~d~~~ 243 (405)
...+.+.++-.+.-+ .+...|.|+...-|..++ +...+.. +. -++|+||||.-+.+
T Consensus 108 --~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~r-k~iIllTDG~~~~~----- 179 (296)
T TIGR03436 108 --SDPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGR-KALIVISDGGDNRS----- 179 (296)
T ss_pred --CCHHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCC-eEEEEEecCCCcch-----
Confidence 123444444333222 123367788777765554 3333221 22 57899999965431
Q ss_pred CCCChhHHHHHHHHHHhcCCCcEEEEEeccC
Q 015549 244 GCLSPQEQKTVDAIVKASELPLSIVLVGVGD 274 (405)
Q Consensus 244 ~~~~~d~~eTi~aIv~AS~lPLSIIiVGVGd 274 (405)
.....+++..+.+.-+.|..||+|+
T Consensus 180 ------~~~~~~~~~~~~~~~v~vy~I~~~~ 204 (296)
T TIGR03436 180 ------RDTLERAIDAAQRADVAIYSIDARG 204 (296)
T ss_pred ------HHHHHHHHHHHHHcCCEEEEeccCc
Confidence 1222233333445568888888875
No 45
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=97.05 E-value=0.0039 Score=59.05 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=89.2
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCcc
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~~ 181 (405)
++++|||.|+||.. |+ .+.+. .-.-..|+..+.+.+..|.+....+..||++..... ....+ +.|.-
T Consensus 2 ~l~lavDlSgSM~~-----~~----~~dg~-~~~RL~a~k~v~~~f~~f~~~r~~DriG~~g~~~~~-~~lt~--d~p~t 68 (191)
T cd01455 2 RLKLVVDVSGSMYR-----FN----GYDGR-LDRSLEAVVMVMEAFDGFEDKIQYDIIGHSGDGPCV-PFVKT--NHPPK 68 (191)
T ss_pred ceEEEEECcHhHHH-----Hh----ccCCc-cccHHHHHHHHHHHHHHHHHhCccceeeecCccccc-Ccccc--ccCcc
Confidence 68999999999962 21 01121 222345555565556666677788888887654221 11122 22222
Q ss_pred CCHH--HHHHHHHhhCCceeecCCCChHHHHHHHHHHHH-hcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 015549 182 YGFE--EVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVE-QSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 258 (405)
Q Consensus 182 ~G~e--gVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~-~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv 258 (405)
..-+ +++...-.- -++-+.|+..= .-|..+++..+ ++..+=-|+++||||.-+. +.++|... +-.
T Consensus 69 ~d~~~~~~l~~~l~~-~q~g~ag~~Ta-dAi~~av~rl~~~~~a~~kvvILLTDG~n~~------~~i~P~~a----Aa~ 136 (191)
T cd01455 69 NNKERLETLKMMHAH-SQFCWSGDHTV-EATEFAIKELAAKEDFDEAIVIVLSDANLER------YGIQPKKL----ADA 136 (191)
T ss_pred cchhHHHHHHHHHHh-cccCccCccHH-HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCC------CCCChHHH----HHH
Confidence 2222 233222221 13345676433 88888888887 6655556889999998654 44555321 123
Q ss_pred HhcCCCcEEEEEeccCCCcccccccC
Q 015549 259 KASELPLSIVLVGVGDGPWDMMKEFD 284 (405)
Q Consensus 259 ~AS~lPLSIIiVGVGd~~F~~M~~LD 284 (405)
-|.+.-+=|-.||||..+.+.++.+-
T Consensus 137 lA~~~gV~iytIgiG~~d~~~l~~iA 162 (191)
T cd01455 137 LAREPNVNAFVIFIGSLSDEADQLQR 162 (191)
T ss_pred HHHhCCCEEEEEEecCCCHHHHHHHH
Confidence 34566777777888876555555443
No 46
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.92 E-value=0.015 Score=63.58 Aligned_cols=141 Identities=16% Similarity=0.205 Sum_probs=85.9
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhcc-ccCCCCccceEeecCCCCCCCCcccccCCCC
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLA-VFDEDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~-~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p 179 (405)
..++++||.|+||.. .+..+.|...+..++. .|-..-.+-+++|++.... .++.+
T Consensus 466 ~~vv~vvD~SgSM~~-----------------~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a~--~~~p~----- 521 (633)
T TIGR02442 466 NLVIFVVDASGSMAA-----------------RGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAE--VLLPP----- 521 (633)
T ss_pred ceEEEEEECCccCCC-----------------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCce--EEcCC-----
Confidence 458899999999951 1344666666666553 4666678999999754211 12222
Q ss_pred ccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHh----cCCccEEEEEEeCCccccccccccCCCChhHHHHHH
Q 015549 180 FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQ----SGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVD 255 (405)
Q Consensus 180 ~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~----s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~ 255 (405)
-.+.+.+. +.+..+...|.|.++.-|..+.+.++. ....=.++++||||.-+.+ +. + ..-.++..+
T Consensus 522 -t~~~~~~~----~~L~~l~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~-~~--~--~~~~~~~~~ 591 (633)
T TIGR02442 522 -TSSVELAA----RRLEELPTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVA-DG--G--EPPTDDART 591 (633)
T ss_pred -CCCHHHHH----HHHHhCCCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCC-CC--C--CChHHHHHH
Confidence 12343332 344456678999999999999988773 2233467799999987542 10 0 011233333
Q ss_pred HHHHhcCCCcEEEEEeccCC
Q 015549 256 AIVKASELPLSIVLVGVGDG 275 (405)
Q Consensus 256 aIv~AS~lPLSIIiVGVGd~ 275 (405)
+-....+.-+-+++|+.+.+
T Consensus 592 ~a~~l~~~~i~~~vIdt~~~ 611 (633)
T TIGR02442 592 IAAKLAARGILFVVIDTESG 611 (633)
T ss_pred HHHHHHhcCCeEEEEeCCCC
Confidence 33333445677888888764
No 47
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=96.55 E-value=0.023 Score=53.99 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=72.3
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHH-HHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCC
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQ-AISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yqq-AI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p 179 (405)
..++|.+|.|+||.. |.. ++..+-.+...+. .+-+|-|+.........+ .
T Consensus 58 ~~lvvl~DvSGSM~~--------------------~s~~~l~~~~~l~~~~~---~~~~f~F~~~l~~vT~~l--~---- 108 (222)
T PF05762_consen 58 RRLVVLCDVSGSMAG--------------------YSEFMLAFLYALQRQFR---RVRVFVFSTRLTEVTPLL--R---- 108 (222)
T ss_pred ccEEEEEeCCCChHH--------------------HHHHHHHHHHHHHHhCC---CEEEEEEeeehhhhhhhh--c----
Confidence 369999999999952 222 2222222333333 789999998654322111 1
Q ss_pred ccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHH
Q 015549 180 FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVK 259 (405)
Q Consensus 180 ~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~ 259 (405)
-.+.++++..-...... ++|.|++...++++.+......-.-.++|||+||.-++ ..+...+.++.|.+
T Consensus 109 -~~~~~~~l~~~~~~~~~--~~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~~~~--------~~~~~~~~l~~l~~ 177 (222)
T PF05762_consen 109 -RRDPEEALARLSALVQS--FGGGTDIGQALREFLRQYARPDLRRTTVVIISDGWDTN--------DPEPLAEELRRLRR 177 (222)
T ss_pred -cCCHHHHHHHHHhhccC--CCCccHHHHHHHHHHHHhhcccccCcEEEEEecccccC--------ChHHHHHHHHHHHH
Confidence 12344555444433333 88999999999999988764332457889999994332 12234555555554
Q ss_pred hc
Q 015549 260 AS 261 (405)
Q Consensus 260 AS 261 (405)
..
T Consensus 178 r~ 179 (222)
T PF05762_consen 178 RG 179 (222)
T ss_pred hC
Confidence 43
No 48
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=96.35 E-value=0.029 Score=63.60 Aligned_cols=142 Identities=13% Similarity=0.145 Sum_probs=84.3
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCcc
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~~ 181 (405)
.++++||.|+||... . ..+.-++|+..+. ++.+..+..+-++.|+....-. ..|.+-.
T Consensus 306 ~VVLVLDvSGSM~g~-------d-------RL~~lkqAA~~fL--~~~l~~~DrVGLVtFsssA~vl---~pLt~It--- 363 (863)
T TIGR00868 306 IVCLVLDKSGSMTVE-------D-------RLKRMNQAAKLFL--LQTVEKGSWVGMVTFDSAAYIK---NELIQIT--- 363 (863)
T ss_pred eEEEEEECCcccccc-------C-------HHHHHHHHHHHHH--HHhCCCCCEEEEEEECCceeEe---eccccCC---
Confidence 378899999999521 1 1223355555442 2234556699999999864321 1222111
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCC--ccEEEEEEeCCccccccccccCCCChhHHHHHHHHHH
Q 015549 182 YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGG--QYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVK 259 (405)
Q Consensus 182 ~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~--~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~ 259 (405)
. ....++-...++ ....|-|++..-|+.|.+..++... .=-++++||||+-++ ..+. +.+
T Consensus 364 -s-~~dr~aL~~~L~-~~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~------------~~~~---l~~ 425 (863)
T TIGR00868 364 -S-SAERDALTANLP-TAASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNT------------ISSC---FEE 425 (863)
T ss_pred -c-HHHHHHHHHhhc-cccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCC------------HHHH---HHH
Confidence 1 112233333444 2357889999999999999876432 123568889998543 2233 333
Q ss_pred hcCCCcEEEEEeccCCCccccccc
Q 015549 260 ASELPLSIVLVGVGDGPWDMMKEF 283 (405)
Q Consensus 260 AS~lPLSIIiVGVGd~~F~~M~~L 283 (405)
+....+-|-.||+|...=..|++|
T Consensus 426 lk~~gVtI~TIg~G~dad~~L~~I 449 (863)
T TIGR00868 426 VKQSGAIIHTIALGPSAAKELEEL 449 (863)
T ss_pred HHHcCCEEEEEEeCCChHHHHHHH
Confidence 445688888999997654445544
No 49
>PRK10997 yieM hypothetical protein; Provisional
Probab=96.28 E-value=0.071 Score=57.03 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=83.0
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHH-HHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCC
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAI-SIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI-~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p 179 (405)
-.++|+||.|+||. |. +-.|.+|+ -.++.++.. .+..+-++.|++..... .+ +
T Consensus 324 GpiII~VDtSGSM~--G~--------------ke~~AkalAaAL~~iAl~--q~dr~~li~Fs~~i~~~----~l----~ 377 (487)
T PRK10997 324 GPFIVCVDTSGSMG--GF--------------NEQCAKAFCLALMRIALA--ENRRCYIMLFSTEVVTY----EL----T 377 (487)
T ss_pred CcEEEEEECCCCCC--CC--------------HHHHHHHHHHHHHHHHHh--cCCCEEEEEecCCceee----cc----C
Confidence 46899999999994 21 12344443 333333322 23456689998864321 12 1
Q ss_pred ccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHH
Q 015549 180 FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVK 259 (405)
Q Consensus 180 ~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~ 259 (405)
.-.|+..+++.-.. .++|.|++++.++.+++.+++..-.=.++|||+|+.... ++.++.+.++.+.+
T Consensus 378 ~~~gl~~ll~fL~~-----~f~GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~--------~~eel~~~L~~Lk~ 444 (487)
T PRK10997 378 GPDGLEQAIRFLSQ-----SFRGGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQR--------LPDELVAKVKELQR 444 (487)
T ss_pred CccCHHHHHHHHHH-----hcCCCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCC--------ChHHHHHHHHHHHH
Confidence 23577777665433 258999999999999988865422225689999996432 11123444555555
Q ss_pred hcCCCcEEEEEeccCCCcccccccC
Q 015549 260 ASELPLSIVLVGVGDGPWDMMKEFD 284 (405)
Q Consensus 260 AS~lPLSIIiVGVGd~~F~~M~~LD 284 (405)
....=+.-+.||- .++=+.|+.||
T Consensus 445 ~~~~rf~~l~i~~-~~~p~l~~ifD 468 (487)
T PRK10997 445 QHQHRFHAVAMSA-HGKPGIMRIFD 468 (487)
T ss_pred hcCcEEEEEEeCC-CCCchHHHhcC
Confidence 4444444444442 13323466665
No 50
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=93.18 E-value=0.94 Score=48.10 Aligned_cols=130 Identities=17% Similarity=0.154 Sum_probs=81.3
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHH-HHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCc
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQA-ISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqA-I~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~ 180 (405)
-++|.||-|+||.-. +=+..+| .-++.+++.. +++.+-++-|-.. ++..- ..+.
T Consensus 274 pvilllD~SGSM~G~----------------~e~~AKAvalAl~~~ala--enR~~~~~lF~s~------~~~~e-l~~k 328 (437)
T COG2425 274 PVILLLDKSGSMSGF----------------KEQWAKAVALALMRIALA--ENRDCYVILFDSE------VIEYE-LYEK 328 (437)
T ss_pred CEEEEEeCCCCcCCc----------------HHHHHHHHHHHHHHHHHH--hccceEEEEeccc------ceeee-ecCC
Confidence 699999999999521 1112222 2233333333 3466888888762 22221 1344
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC-CccEEEEEEeCCccccccccccCCCChhHHHHHHHHHH
Q 015549 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG-GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVK 259 (405)
Q Consensus 181 ~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~-~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~ 259 (405)
..|++++++---. .+.|.|+|...|..|++.+++.. .+ .=||+||||.-.. +.+....++.+.+
T Consensus 329 ~~~~~e~i~fL~~-----~f~GGTD~~~~l~~al~~~k~~~~~~-adiv~ITDg~~~~---------~~~~~~~v~e~~k 393 (437)
T COG2425 329 KIDIEELIEFLSY-----VFGGGTDITKALRSALEDLKSRELFK-ADIVVITDGEDER---------LDDFLRKVKELKK 393 (437)
T ss_pred ccCHHHHHHHHhh-----hcCCCCChHHHHHHHHHHhhcccccC-CCEEEEeccHhhh---------hhHHHHHHHHHHH
Confidence 5688888754333 24455999999999999998653 23 4469999996432 1246777888888
Q ss_pred hcCCCcEEEEEe
Q 015549 260 ASELPLSIVLVG 271 (405)
Q Consensus 260 AS~lPLSIIiVG 271 (405)
+++.=+--|+||
T Consensus 394 ~~~~rl~aV~I~ 405 (437)
T COG2425 394 RRNARLHAVLIG 405 (437)
T ss_pred HhhceEEEEEec
Confidence 888776666654
No 51
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=92.56 E-value=1.4 Score=43.80 Aligned_cols=144 Identities=14% Similarity=0.218 Sum_probs=91.1
Q ss_pred CcceeceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHH-hh-hccccCCCCccceEeecCCCCCCCCcccc
Q 015549 97 GLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISII-GK-TLAVFDEDNLIPCYGFGDASTHDQDVFSF 174 (405)
Q Consensus 97 Gle~~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~I-g~-vl~~yD~D~~ip~yGFGa~~~~~~~vF~f 174 (405)
|=...=++++||-|+||.-. +. .++.+.+ .. +-..|-.-.++-+.+|=.... ++ -+
T Consensus 75 ~r~g~lvvfvVDASgSM~~~----------~R--------m~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A---~l-ll 132 (261)
T COG1240 75 GRAGNLIVFVVDASGSMAAR----------RR--------MAAAKGAALSLLRDAYQRRDKVAVIAFRGEKA---EL-LL 132 (261)
T ss_pred cCcCCcEEEEEeCcccchhH----------HH--------HHHHHHHHHHHHHHHHHccceEEEEEecCCcc---eE-Ee
Confidence 43433358899999999621 11 2222222 22 224566667888888854321 11 11
Q ss_pred cCCCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC----CccEEEEEEeCCccccccccccCCCChhH
Q 015549 175 YSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG----GQYHVLLIIADGQVTRSVDTVRGCLSPQE 250 (405)
Q Consensus 175 ~~~~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~----~~Y~VLLIITDG~Itds~d~~~~~~~~d~ 250 (405)
.|. ..++.+ .+.|..+.-+|-|-.++-|.++.++..+.. ..-.|+|+||||..++... +++ +
T Consensus 133 ~pT----~sv~~~----~~~L~~l~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~-----~~~-~ 198 (261)
T COG1240 133 PPT----SSVELA----ERALERLPTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIP-----LGP-K 198 (261)
T ss_pred CCc----ccHHHH----HHHHHhCCCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCC-----Cch-H
Confidence 122 234333 334455667899999999999999875432 3457889999999765321 222 6
Q ss_pred HHHHHHHHHhcCCCcEEEEEeccCCC
Q 015549 251 QKTVDAIVKASELPLSIVLVGVGDGP 276 (405)
Q Consensus 251 ~eTi~aIv~AS~lPLSIIiVGVGd~~ 276 (405)
.++.++-.+....++-+++|......
T Consensus 199 ~e~~~~a~~~~~~g~~~lvid~e~~~ 224 (261)
T COG1240 199 AETLEAASKLRLRGIQLLVIDTEGSE 224 (261)
T ss_pred HHHHHHHHHHhhcCCcEEEEecCCcc
Confidence 78888888888899988999887765
No 52
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=87.13 E-value=8.6 Score=35.85 Aligned_cols=149 Identities=11% Similarity=0.127 Sum_probs=76.3
Q ss_pred eEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccc---cCCCCccceEeecCCCCCC-------CCcc
Q 015549 103 LIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV---FDEDNLIPCYGFGDASTHD-------QDVF 172 (405)
Q Consensus 103 liVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~---yD~D~~ip~yGFGa~~~~~-------~~vF 172 (405)
+++.||.+.||.... .+... +.+.|++.|-.+++. ....-.+-|+.||...+.+ .+|+
T Consensus 2 ~vflID~s~sM~~~~-----------~~~~~-~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~ 69 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPS-----------SESES-PLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIF 69 (224)
T ss_dssp EEEEEE-SCGGGS-B-----------TTCS--HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEE
T ss_pred EEEEEECCHHHCCCC-----------CCcch-hHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceE
Confidence 588999999996421 11111 677777777766543 3334679999999876643 3355
Q ss_pred cccCCCCccCCHHHHHHHHHhhCCc-------eeecCCCChHHHHHHHHHHHHh--cCCcc--EEEEEEeCCcccccccc
Q 015549 173 SFYSGGRFCYGFEEVLSRYREIVPN-------LKLAGPTSFAPVIEMAMSIVEQ--SGGQY--HVLLIIADGQVTRSVDT 241 (405)
Q Consensus 173 ~f~~~~p~~~G~egVl~aYr~~l~~-------v~LsGPT~FaPVI~~ai~i~~~--s~~~Y--~VLLIITDG~Itds~d~ 241 (405)
.+.+-+. -.++.+.+. .+.+.. ..-.....+..++-.++.+..+ ...++ --+++|||+.--.
T Consensus 70 ~l~~l~~--~~~~~l~~L-~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~---- 142 (224)
T PF03731_consen 70 VLQPLDP--PSAERLKEL-EELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPH---- 142 (224)
T ss_dssp EEEECC----BHHHHHHH-HTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTT----
T ss_pred EeecCCc--cCHHHHHHH-HHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCC----
Confidence 4442221 123322111 111111 0012345677777777777654 22333 3467899885221
Q ss_pred ccCCCChhHHHHHHH--HHHhcCCCcEEEEEecc
Q 015549 242 VRGCLSPQEQKTVDA--IVKASELPLSIVLVGVG 273 (405)
Q Consensus 242 ~~~~~~~d~~eTi~a--Iv~AS~lPLSIIiVGVG 273 (405)
. -..+.+.+++- +.+....-+.|.++.+.
T Consensus 143 --~-~~~~~~~~~~~l~~~Dl~~~~i~~~~~~l~ 173 (224)
T PF03731_consen 143 --E-DDDELERIIQKLKAKDLQDNGIEIELFFLP 173 (224)
T ss_dssp --T--CCCHHHHHHHHHHHHHHHHTEEEEEEECT
T ss_pred --C-CHHHHHHHHHhhccccchhcCcceeEeecC
Confidence 0 11245666666 66677788888888883
No 53
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=85.62 E-value=5.5 Score=38.41 Aligned_cols=136 Identities=18% Similarity=0.275 Sum_probs=75.7
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccc--cC-CCCccceEeecCCCC---CCCCccccc
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV--FD-EDNLIPCYGFGDAST---HDQDVFSFY 175 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~--yD-~D~~ip~yGFGa~~~---~~~~vF~f~ 175 (405)
-+.+-+|.++||. ++.+|... .-|..+...|.+ |- .--.+-+.-||.... +..++-+|+
T Consensus 5 P~~lllDtSgSM~--------Ge~IealN-------~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~~nF~ 69 (207)
T COG4245 5 PCYLLLDTSGSMI--------GEPIEALN-------AGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTDAANFN 69 (207)
T ss_pred CEEEEEecCcccc--------cccHHHHH-------HHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechhhHhhcC
Confidence 4678999999994 34666543 222222222221 00 123477788875321 111222332
Q ss_pred CCCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc--------CCcc-EEEEEEeCCccccccccccCCC
Q 015549 176 SGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS--------GGQY-HVLLIIADGQVTRSVDTVRGCL 246 (405)
Q Consensus 176 ~~~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s--------~~~Y-~VLLIITDG~Itds~d~~~~~~ 246 (405)
.|.+...|-|.....|+.+++.+++. .+.| .+..+||||..+|
T Consensus 70 -------------------~p~L~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD--------- 121 (207)
T COG4245 70 -------------------PPILTAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTD--------- 121 (207)
T ss_pred -------------------CCceecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcch---------
Confidence 34455668899999999999888643 2345 4557899999987
Q ss_pred ChhHHH--HHHHHHHhcCCCcEEEEEecc--CCCcccccccC
Q 015549 247 SPQEQK--TVDAIVKASELPLSIVLVGVG--DGPWDMMKEFD 284 (405)
Q Consensus 247 ~~d~~e--Ti~aIv~AS~lPLSIIiVGVG--d~~F~~M~~LD 284 (405)
+.++ ++..--+++. .++++.+|| +++-..++++-
T Consensus 122 --~w~~~~~~~~~~~~~~--k~v~a~~~G~~~ad~~~L~qit 159 (207)
T COG4245 122 --DWQAGAALVFQGERRA--KSVAAFSVGVQGADNKTLNQIT 159 (207)
T ss_pred --HHHhHHHHhhhccccc--ceEEEEEecccccccHHHHHHH
Confidence 2222 2222223333 455555555 45666666654
No 54
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=73.57 E-value=13 Score=40.93 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=64.1
Q ss_pred eeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccCCCc
Q 015549 198 LKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPW 277 (405)
Q Consensus 198 v~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS~lPLSIIiVGVGd~~F 277 (405)
+...--|--...|++|.+..-...+.=-.||++|||..+| +|--.|+. -...|.+|+.+|-+.-|+++-|=|-...-
T Consensus 527 LePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd-~d~YEgr~--gIeDTr~AV~eaRk~Gi~VF~Vtld~ea~ 603 (637)
T COG4548 527 LEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPND-FDHYEGRF--GIEDTREAVIEARKSGIEVFNVTLDREAI 603 (637)
T ss_pred cCccccccccHHHHHHHHHHhcCcccceEEEEecCCCccc-cccccccc--chhhHHHHHHHHHhcCceEEEEEecchhh
Confidence 3444557777889988876544444556788999999987 55333333 36789999999999999999998877654
Q ss_pred ccccccCCCCCCccccceeccc
Q 015549 278 DMMKEFDDNIPARAFDNFQFVN 299 (405)
Q Consensus 278 ~~M~~LDd~l~~R~rDNvQFV~ 299 (405)
+.+..+-+ .|.+-||.
T Consensus 604 ~y~p~~fg------qngYa~V~ 619 (637)
T COG4548 604 SYLPALFG------QNGYAFVE 619 (637)
T ss_pred hhhHHHhc------cCceEEcc
Confidence 44433321 26666765
No 55
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=70.16 E-value=13 Score=36.30 Aligned_cols=64 Identities=16% Similarity=0.303 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCccEEEEEEeCCcccccc---ccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccC
Q 015549 209 VIEMAMSIVEQSGGQYHVLLIIADGQVTRSV---DTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGD 274 (405)
Q Consensus 209 VI~~ai~i~~~s~~~Y~VLLIITDG~Itds~---d~~~~~~~~d~~eTi~aIv~AS~lPLSIIiVGVGd 274 (405)
.|..|.+...+...+=-||++|+||...|.. +....-|..+++++++.|.. .-++-++-||||.
T Consensus 121 Al~~a~~rL~~r~e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi~~ie~--~~~Vel~aiGIg~ 187 (219)
T PF11775_consen 121 ALRWAAERLLARPEQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVIAEIET--RSDVELIAIGIGH 187 (219)
T ss_pred HHHHHHHHHHcCCccceEEEEEeCCCcCcccccccCChHHHHHHHHHHHHHHhc--cCCcEEEEEEcCC
Confidence 3333333333334445699999999987521 01111344556666666653 3477888888886
No 56
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=67.47 E-value=54 Score=39.06 Aligned_cols=147 Identities=14% Similarity=0.269 Sum_probs=92.6
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCc
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~ 180 (405)
-.+.|-+|-++|+. | ..+| -|-..+..+|.-+-+|..+-+.-|+........|| .+..
T Consensus 226 KdiviLlD~SgSm~--g------~~~~----------lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~----~~~l 283 (1104)
T KOG2353|consen 226 KDIVILLDVSGSMS--G------LRLD----------LAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCF----NGTL 283 (1104)
T ss_pred cceEEEEecccccc--c------hhhH----------HHHHHHHHHHHhcccCCeEEEEeeccccCcccccc----cCce
Confidence 46788899999984 1 1333 23334445566666677888888876654443342 2233
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc---------CCccEEEEEEeCCccccccccccCCCChhHH
Q 015549 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS---------GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQ 251 (405)
Q Consensus 181 ~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s---------~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~ 251 (405)
+.+--...+..++.+..+...|-++|.-+.+.|-+..... +-.+.+.++||||...+ -+
T Consensus 284 vqAt~~nk~~~~~~i~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~------------~~ 351 (1104)
T KOG2353|consen 284 VQATMRNKKVFKEAIETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDEN------------AK 351 (1104)
T ss_pred eecchHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCccc------------HH
Confidence 4444445566677778888889999999999998775432 12578889999998765 34
Q ss_pred HHHHHHHHhc-CCCcEEEEEeccCCCccccc
Q 015549 252 KTVDAIVKAS-ELPLSIVLVGVGDGPWDMMK 281 (405)
Q Consensus 252 eTi~aIv~AS-~lPLSIIiVGVGd~~F~~M~ 281 (405)
++.+.-..-. ..-+|=.+||-+..+|..++
T Consensus 352 ~If~~yn~~~~~Vrvftflig~~~~~~~~~~ 382 (1104)
T KOG2353|consen 352 EIFEKYNWPDKKVRVFTFLIGDEVYDLDEIQ 382 (1104)
T ss_pred HHHHhhccCCCceEEEEEEecccccccccch
Confidence 4333333211 23455566777777766654
No 57
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=64.99 E-value=73 Score=35.11 Aligned_cols=166 Identities=11% Similarity=0.177 Sum_probs=90.3
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccc---cCCCCccceEeecCCCCCC----CCcccc
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV---FDEDNLIPCYGFGDASTHD----QDVFSF 174 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~---yD~D~~ip~yGFGa~~~~~----~~vF~f 174 (405)
-++++||+|.||... . ..+ ....+.+.||+.|-.+++. ..+.-+|-|+-||...+.+ .+|+-+
T Consensus 12 ailflIDvs~sM~~~----~--~~~----~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~ 81 (584)
T TIGR00578 12 SLIFLVDASKAMFEE----S--QGE----DELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVL 81 (584)
T ss_pred EEEEEEECCHHHcCC----C--cCc----CcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEE
Confidence 589999999999631 0 011 1246678888777766553 5566799999999876542 344434
Q ss_pred cC-CCCccCCHHHHHHHHHhh-----C-CceeecCCCChHHHHHHHHHHHHhcCCccE--EEEEEeCCccccccccccCC
Q 015549 175 YS-GGRFCYGFEEVLSRYREI-----V-PNLKLAGPTSFAPVIEMAMSIVEQSGGQYH--VLLIIADGQVTRSVDTVRGC 245 (405)
Q Consensus 175 ~~-~~p~~~G~egVl~aYr~~-----l-~~v~LsGPT~FaPVI~~ai~i~~~s~~~Y~--VLLIITDG~Itds~d~~~~~ 245 (405)
++ +.|...-+.++.+ ..+- + ..+..+....++.+|-.++++....+.+|. =+++|||-. ..|+.
T Consensus 82 ~~L~~p~a~~i~~L~~-l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D------~P~~~ 154 (584)
T TIGR00578 82 QELDNPGAKRILELDQ-FKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNED------NPHGN 154 (584)
T ss_pred eeCCCCCHHHHHHHHH-HhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCC------CCCCC
Confidence 32 2232222222211 1110 0 000111224789999999888765333331 257888753 22221
Q ss_pred CChhHHHHHHHHHHhcCCCcEEEEEeccC-CCcccccccC
Q 015549 246 LSPQEQKTVDAIVKASELPLSIVLVGVGD-GPWDMMKEFD 284 (405)
Q Consensus 246 ~~~d~~eTi~aIv~AS~lPLSIIiVGVGd-~~F~~M~~LD 284 (405)
=+.....+..-+.+..++-+.|.++-+.. ++|+.-..++
T Consensus 155 ~~~~~~~a~~~a~dl~~~gi~ielf~l~~~~~Fd~s~Fy~ 194 (584)
T TIGR00578 155 DSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYR 194 (584)
T ss_pred chhHHHHHHHHHHHHHhcCeEEEEEecCCCCCCChhhhhH
Confidence 11122333445667777899998887753 2355444333
No 58
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.06 E-value=1.5e+02 Score=31.61 Aligned_cols=142 Identities=19% Similarity=0.309 Sum_probs=86.0
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCc
Q 015549 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~ 180 (405)
-++++|+|.|+|+.. +-| +...|--+.|- .++ |-..-.....-|..|-+..+.. +|.-+.
T Consensus 428 kr~~laldvs~sm~~--------rv~---~s~ln~reaaa-~m~--linlhnead~~~vaf~d~lte~----pftkd~-- 487 (598)
T KOG4465|consen 428 KRFCLALDVSASMNQ--------RVL---GSILNAREAAA-AMC--LINLHNEADSRCVAFCDELTEC----PFTKDM-- 487 (598)
T ss_pred ceEEEEEecchhhhh--------hhh---ccccchHHHHh-hhh--eeeeccccceeEEEeccccccC----CCcccc--
Confidence 468999999999942 111 11233333332 222 3333345556788888776542 222221
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHh
Q 015549 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKA 260 (405)
Q Consensus 181 ~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~A 260 (405)
-+..|+.+- .++..+|..+=-|+| .+++++.++-|.+|+||...- .|+.-| .+.++.-++|
T Consensus 488 --kigqv~~~~----nni~~g~tdcglpm~-----wa~ennlk~dvfii~tdndt~------ageihp--~~aik~yrea 548 (598)
T KOG4465|consen 488 --KIGQVLDAM----NNIDAGGTDCGLPMI-----WAQENNLKADVFIIFTDNDTF------AGEIHP--AEAIKEYREA 548 (598)
T ss_pred --cHHHHHHHH----hcCCCCCCccCCcee-----ehhhcCCCccEEEEEecCccc------ccccCH--HHHHHHHHHh
Confidence 345555433 334455554544544 356777889999999996432 344433 5778889999
Q ss_pred cCCC-cEEEEEeccCCCccccc
Q 015549 261 SELP-LSIVLVGVGDGPWDMMK 281 (405)
Q Consensus 261 S~lP-LSIIiVGVGd~~F~~M~ 281 (405)
+..| --+|+.|+-..+|..-.
T Consensus 549 ~~i~dakliv~amqa~d~siad 570 (598)
T KOG4465|consen 549 MDIHDAKLIVCAMQANDFSIAD 570 (598)
T ss_pred cCCCcceEEEEEeecCCceecC
Confidence 9999 67888888888887654
No 59
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=52.69 E-value=1.4e+02 Score=28.84 Aligned_cols=97 Identities=26% Similarity=0.398 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHcCcceeceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCC
Q 015549 85 SLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDA 164 (405)
Q Consensus 85 ~ld~V~~aL~~~Gle~~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~ 164 (405)
++++| .+|.++|.+ |||+|.|.... |.+|+ +-|..| =+.| ++-+++
T Consensus 53 T~~ev-~~l~~aGad----IIAlDaT~R~R--------p~~l~----------~li~~i---~~~~-------~l~MAD- 98 (192)
T PF04131_consen 53 TLKEV-DALAEAGAD----IIALDATDRPR--------PETLE----------ELIREI---KEKY-------QLVMAD- 98 (192)
T ss_dssp SHHHH-HHHHHCT-S----EEEEE-SSSS---------SS-HH----------HHHHHH---HHCT-------SEEEEE-
T ss_pred CHHHH-HHHHHcCCC----EEEEecCCCCC--------CcCHH----------HHHHHH---HHhC-------cEEeee-
Confidence 77888 678899998 69999997663 13333 223322 1122 333333
Q ss_pred CCCCCCcccccCCCCccCCHHHHHHHHHhhCCce--eecCCCChH----HHHHHHHHHHHhcCCccEEEEEEeCCcccc
Q 015549 165 STHDQDVFSFYSGGRFCYGFEEVLSRYREIVPNL--KLAGPTSFA----PVIEMAMSIVEQSGGQYHVLLIIADGQVTR 237 (405)
Q Consensus 165 ~~~~~~vF~f~~~~p~~~G~egVl~aYr~~l~~v--~LsGPT~Fa----PVI~~ai~i~~~s~~~Y~VLLIITDG~Itd 237 (405)
|.-+++.+++.+--+--| .|+|.|.+. |=++.+.++++. + . -+|..|.|..
T Consensus 99 ----------------ist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~-~-~----pvIaEGri~t 155 (192)
T PF04131_consen 99 ----------------ISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA-D-V----PVIAEGRIHT 155 (192)
T ss_dssp -----------------SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT-T-S----EEEEESS--S
T ss_pred ----------------cCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC-C-C----cEeecCCCCC
Confidence 556788888777655444 478877665 667777777664 2 1 2789999985
No 60
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.98 E-value=56 Score=34.04 Aligned_cols=52 Identities=25% Similarity=0.289 Sum_probs=32.8
Q ss_pred eecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccC
Q 015549 199 KLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGD 274 (405)
Q Consensus 199 ~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS~lPLSIIiVGVGd 274 (405)
.=+|.|.|.||++..- +.. .--+|+.+|||--+- . | .+-.-|+=|++-|-|.
T Consensus 323 ~ggG~Tdf~Pvfeyle----k~~-~~~~lIyfTDG~gd~-------------p-----~-~~r~~~~lwVl~~~~~ 374 (396)
T COG3864 323 DGGGGTDFSPVFEYLE----KNR-MECFLIYFTDGMGDQ-------------P-----L-VFRPKVLLWVLTGAKG 374 (396)
T ss_pred CCCCCccccHHHHHHH----hhc-ccceEEEEccCCCCc-------------c-----c-ccCCcceEEEecCCcc
Confidence 3356799999998653 322 126788999996432 0 1 1334568888877653
No 61
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=49.65 E-value=41 Score=34.14 Aligned_cols=156 Identities=18% Similarity=0.273 Sum_probs=73.9
Q ss_pred cccccccHHHHHHHHHHcCcceeceEEEEecCCCCCc---CCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCc
Q 015549 79 IADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEW---TGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNL 155 (405)
Q Consensus 79 i~~~ys~ld~V~~aL~~~Gle~~nliVaIDFT~SN~~---~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ 155 (405)
+.++..-||.|.+|++++|++. .+.+|||+.+|--+ .|+=-+..+....-....=.=++-|.-..+++..|
T Consensus 76 ~~~~eeaL~ll~~Ai~~aGy~~-~v~ialD~AAsefyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li~~Y----- 149 (295)
T PF00113_consen 76 IDDNEEALDLLMEAIKEAGYEP-DVAIALDVAASEFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKKY----- 149 (295)
T ss_dssp BSSHHHHHHHHHHHHHHTT-TT-TBEEEEE--GGGGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHHS-----
T ss_pred CcchhHHHHHHHHHHHHccccc-eeeeeccccHHHhhhccCCeEEEeecccccccccccCHHHHHHHHHHHHHhc-----
Confidence 3445567899999999999995 99999999999764 22100000000000000000133344444444443
Q ss_pred cceEeecCCCCCCCCcccccCCCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCcc
Q 015549 156 IPCYGFGDASTHDQDVFSFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQV 235 (405)
Q Consensus 156 ip~yGFGa~~~~~~~vF~f~~~~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~I 235 (405)
|+...-+ +|..+ ..++..+.=++.-.++++-|--.|.--.+.+.+-+++.. .=. |+|-=.||
T Consensus 150 -PIvsIED---------pf~ed-----D~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~-~na--~llK~NQi 211 (295)
T PF00113_consen 150 -PIVSIED---------PFDED-----DWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKA-CNA--LLLKPNQI 211 (295)
T ss_dssp --EEEEES---------SS-TT------HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT---SE--EEE-HHHH
T ss_pred -CeEEEEc---------ccccc-----chHHHHHHHHhhhcceeeecccccccchhhhhccchhhh-ccc--hhhhhhhh
Confidence 3443322 12212 233332222222236788886555444444433333321 112 33444454
Q ss_pred ccccccccCCCChhHHHHHHHHHHhcCCCcEEEEE
Q 015549 236 TRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLV 270 (405)
Q Consensus 236 tds~d~~~~~~~~d~~eTi~aIv~AS~lPLSIIiV 270 (405)
.- .-+|++++..|...-..+|+=
T Consensus 212 gT------------vte~lea~~~a~~~g~~~vvS 234 (295)
T PF00113_consen 212 GT------------VTETLEAVKLAKSAGWGVVVS 234 (295)
T ss_dssp SS------------HHHHHHHHHHHHHTT-EEEEE
T ss_pred HH------------HHHHHHHHHHHHHCCceeecc
Confidence 42 568899999998887777663
No 62
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=47.87 E-value=1.5e+02 Score=31.14 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=41.7
Q ss_pred ccccHHHHHHHHHHcCcce-eceEEEEecCCCCCcCCCCCCCCCCcccc--CCCCCHHHHHHHHHhhhccccC
Q 015549 82 DYKSLDQVTEALARAGLES-SNLIVGIDFTKSNEWTGKRSFNRRSLHYI--GDGLNPYEQAISIIGKTLAVFD 151 (405)
Q Consensus 82 ~ys~ld~V~~aL~~~Gle~-~nliVaIDFT~SN~~~g~~s~~~~SLH~i--~~~~N~YqqAI~~Ig~vl~~yD 151 (405)
+-.-|+.|.+|++++|++- -.+.++||+-+|--|.. ...+|. .+..-...+||+.+.++++.|+
T Consensus 212 d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~------~~y~~~~~~~~~~t~~eai~~~~~l~e~~~ 278 (408)
T cd03313 212 NEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDE------GKYVYDSDEGKKLTSEELIDYYKELVKKYP 278 (408)
T ss_pred hHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhccc------CcceeccCCCcccCHHHHHHHHHHHHHhCC
Confidence 4445777999999999982 27999999988854321 112221 1111234888888888887776
No 63
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=46.53 E-value=64 Score=32.11 Aligned_cols=85 Identities=22% Similarity=0.412 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHhhCCceeec-CCCCh-----HHHHHHHHHHHHhcC--CccEEEEEEeCCc--cccccccccCCCChhHH
Q 015549 182 YGFEEVLSRYREIVPNLKLA-GPTSF-----APVIEMAMSIVEQSG--GQYHVLLIIADGQ--VTRSVDTVRGCLSPQEQ 251 (405)
Q Consensus 182 ~G~egVl~aYr~~l~~v~Ls-GPT~F-----aPVI~~ai~i~~~s~--~~Y~VLLIITDG~--Itds~d~~~~~~~~d~~ 251 (405)
.|+.+++..-++..|.+.+. =|+.+ +.=|-.+++.+.+.+ ..|=| |||+-|+ +.|. ..+ +.+
T Consensus 26 Aa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dv-iii~RGGGs~eDL-----~~F--N~e 97 (319)
T PF02601_consen 26 AAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDV-IIIIRGGGSIEDL-----WAF--NDE 97 (319)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccE-EEEecCCCChHHh-----ccc--ChH
Confidence 45666666666655544322 23333 444555555554432 23445 4444544 3331 111 346
Q ss_pred HHHHHHHHhcCCCcEEEEEeccCC-Ccc
Q 015549 252 KTVDAIVKASELPLSIVLVGVGDG-PWD 278 (405)
Q Consensus 252 eTi~aIv~AS~lPLSIIiVGVGd~-~F~ 278 (405)
+..++|. +|..| ||.|||-+ ||.
T Consensus 98 ~varai~-~~~~P---visaIGHe~D~t 121 (319)
T PF02601_consen 98 EVARAIA-ASPIP---VISAIGHETDFT 121 (319)
T ss_pred HHHHHHH-hCCCC---EEEecCCCCCch
Confidence 6666665 34566 67777753 443
No 64
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=46.22 E-value=32 Score=34.70 Aligned_cols=15 Identities=33% Similarity=0.725 Sum_probs=8.9
Q ss_pred CCccEEE--EEEeCCcc
Q 015549 221 GGQYHVL--LIIADGQV 235 (405)
Q Consensus 221 ~~~Y~VL--LIITDG~I 235 (405)
.+.|-|+ |+=++|..
T Consensus 216 ~~eyivvtilva~~g~~ 232 (289)
T PF07466_consen 216 PNEYIVVTILVAAEGKL 232 (289)
T ss_pred CCceEEEEEEEEecCCc
Confidence 4567665 44567765
No 65
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=45.17 E-value=41 Score=32.94 Aligned_cols=56 Identities=21% Similarity=0.330 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCC---cEEEEEeccC
Q 015549 208 PVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELP---LSIVLVGVGD 274 (405)
Q Consensus 208 PVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS~lP---LSIIiVGVGd 274 (405)
|++..+++.++++++..|++=+++||+|+-. ++.....|.-|.+.- +.|-.+.=|.
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh-----------~~Hl~al~~~a~~~gv~~V~vH~f~DGR 72 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMGLLSDGGVHSH-----------IDHLFALIKLAKKQGVKKVYVHAFTDGR 72 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEEEESS-SSS-------------HHHHHHHHHHHHHTT-SEEEEEEEE-SS
T ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCCcccc-----------HHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence 7888999999988888999889999999852 445444454455443 5566655453
No 66
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=42.53 E-value=98 Score=32.75 Aligned_cols=62 Identities=19% Similarity=0.248 Sum_probs=42.4
Q ss_pred CCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccC
Q 015549 195 VPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGD 274 (405)
Q Consensus 195 l~~v~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS~lPLSIIiVGVGd 274 (405)
+-.|++.- -++.-+++++....++.|-.- +.||++||... +.+++.+. +...+ +..-|||.
T Consensus 264 ~~GVR~DS-Gd~~~~~~kvr~~ld~~G~~~-~~Ii~Sdg~ld--------------e~~i~~l~-~~g~~--~d~FGvGT 324 (405)
T COG1488 264 LDGVRLDS-GDPRELSEKVRAHLDKLGYDP-VKIIVSDGLLD--------------EKIIALLR-AFGAR--NDAFGVGT 324 (405)
T ss_pred ceEEECCC-CCHHHHHHHHHHHHHHcCCCc-eEEEEeCCcch--------------HHHHHHHH-HhCCC--ccEeccch
Confidence 44556544 577778888888887776443 88999999764 34454444 46666 88888887
Q ss_pred C
Q 015549 275 G 275 (405)
Q Consensus 275 ~ 275 (405)
.
T Consensus 325 ~ 325 (405)
T COG1488 325 N 325 (405)
T ss_pred h
Confidence 3
No 67
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=41.56 E-value=57 Score=36.35 Aligned_cols=64 Identities=19% Similarity=0.311 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCccEEEEEEeCCcccccccc----ccCCCChhHHHHHHHHHHhcCC-CcEEEEEeccCC
Q 015549 208 PVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDT----VRGCLSPQEQKTVDAIVKASEL-PLSIVLVGVGDG 275 (405)
Q Consensus 208 PVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~----~~~~~~~d~~eTi~aIv~AS~l-PLSIIiVGVGd~ 275 (405)
..|.-|.+...+...+=-|||+|+||...|- .| ...-|..++++ .|...... +|=++-||||..
T Consensus 500 eAl~wa~~rL~~R~e~rKiL~ViSDG~P~D~-~TlsvN~~~~l~~hLr~---vi~~~e~~~~vel~aigIg~D 568 (600)
T TIGR01651 500 EALMWAHQRLIARPEQRRILMMISDGAPVDD-STLSVNPGNYLERHLRA---VIEEIETRSPVELLAIGIGHD 568 (600)
T ss_pred HHHHHHHHHHhcCcccceEEEEEeCCCcCCc-cccccCchhHHHHHHHH---HHHHHhccCCceEEEeecccc
Confidence 4445554444444556689999999997751 11 01123223333 34444453 888899999874
No 68
>PLN00191 enolase
Probab=39.63 E-value=2.8e+02 Score=29.84 Aligned_cols=70 Identities=17% Similarity=0.367 Sum_probs=42.4
Q ss_pred cccccHHHHHHHHHHcCcceeceEEEEecCCCCCcCCCCCCCC--CCccccCCCCCHHHHHHHHHhhhccccC
Q 015549 81 DDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNR--RSLHYIGDGLNPYEQAISIIGKTLAVFD 151 (405)
Q Consensus 81 ~~ys~ld~V~~aL~~~Gle~~nliVaIDFT~SN~~~g~~s~~~--~SLH~i~~~~N~YqqAI~~Ig~vl~~yD 151 (405)
++-.-|+.|.+|++++|++ -++.+|||+-+|--+..+..|.- +.-...+...-..+++|+.+-.++..|+
T Consensus 241 ~~~eal~ll~eAi~~ag~~-~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~ 312 (457)
T PLN00191 241 DNKEGLELLKEAIEKAGYT-GKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYP 312 (457)
T ss_pred CHHHHHHHHHHHHHHcCCC-CceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCC
Confidence 4445688899999999999 47999999999854410001100 0000000111245788888887776665
No 69
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=38.94 E-value=97 Score=29.50 Aligned_cols=162 Identities=17% Similarity=0.237 Sum_probs=82.1
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccC--CCCccceEeecCCCC-----C----C--
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD--EDNLIPCYGFGDAST-----H----D-- 168 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD--~D~~ip~yGFGa~~~-----~----~-- 168 (405)
.+++.||.|...-. .+..+.+++.|-.+|.... ++-+|-+..|+.... . .
T Consensus 5 ~y~FvID~s~~av~-----------------~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~ 67 (243)
T PF04811_consen 5 VYVFVIDVSYEAVQ-----------------SGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQM 67 (243)
T ss_dssp EEEEEEE-SHHHHH-----------------HTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEE
T ss_pred EEEEEEECchhhhh-----------------ccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcc
Confidence 47889998855210 2346888888888888777 888888888876542 0 0
Q ss_pred ------CCcccccCCC-----Ccc-CCHHHHHHHHHhhCCce-eecCCCChHHHHHHHHHHHH--hcCCccEEEEEEeCC
Q 015549 169 ------QDVFSFYSGG-----RFC-YGFEEVLSRYREIVPNL-KLAGPTSFAPVIEMAMSIVE--QSGGQYHVLLIIADG 233 (405)
Q Consensus 169 ------~~vF~f~~~~-----p~~-~G~egVl~aYr~~l~~v-~LsGPT~FaPVI~~ai~i~~--~s~~~Y~VLLIITDG 233 (405)
.+.|.-.+++ .+| .-++++++.-.+..+.. .-....++...|+.|..+.+ ..+| .|++|+ -|
T Consensus 68 ~v~~dl~~~~~p~~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~gG--kI~~F~-s~ 144 (243)
T PF04811_consen 68 IVVSDLDDPFIPLPDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNTGG--KILVFT-SG 144 (243)
T ss_dssp EEEHHTTSHHSSTSSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS-E--EEEEEE-SS
T ss_pred cchHHHhhcccCCcccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccccCC--EEEEEe-cc
Confidence 1111111111 112 23566666665544433 13355899999999999988 5454 454444 44
Q ss_pred c--------cccccccccCC--------CChhHHHHHHHHHHhcCCCcEEEEEeccCC--Cccccccc
Q 015549 234 Q--------VTRSVDTVRGC--------LSPQEQKTVDAIVKASELPLSIVLVGVGDG--PWDMMKEF 283 (405)
Q Consensus 234 ~--------Itds~d~~~~~--------~~~d~~eTi~aIv~AS~lPLSIIiVGVGd~--~F~~M~~L 283 (405)
- +...-++.+.. +.++.+--.+.-.++++.-+++=+.-.+.. +...|..|
T Consensus 145 ~pt~G~Gg~l~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~tl~~l 212 (243)
T PF04811_consen 145 PPTYGPGGSLKKREDSSHYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSDYVDLATLGPL 212 (243)
T ss_dssp ---SSSTTSS-SBTTSCCCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS--SHHHHTHH
T ss_pred CCCCCCCceecccccccccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCCCCCcHhHHHH
Confidence 2 22211111111 111111234555666778888777766654 33344444
No 70
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=37.28 E-value=84 Score=32.85 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCCcEEEEEeccCCCcccccccCC
Q 015549 251 QKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDD 285 (405)
Q Consensus 251 ~eTi~aIv~AS~lPLSIIiVGVGd~~F~~M~~LDd 285 (405)
.++++||..+....+=+||||=|+|.++.|--||+
T Consensus 179 ~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~ 213 (438)
T PRK00286 179 ASIVAAIERANARGEDVLIVARGGGSLEDLWAFND 213 (438)
T ss_pred HHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCc
Confidence 45666666665544566666666666666666654
No 71
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=35.84 E-value=1.9e+02 Score=31.88 Aligned_cols=113 Identities=16% Similarity=0.215 Sum_probs=63.2
Q ss_pred HHHHHcCcceeceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCC
Q 015549 91 EALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQD 170 (405)
Q Consensus 91 ~aL~~~Gle~~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~ 170 (405)
+.|+..|-- -|+|+.+|.|+||..+ +.+-||. +|=++..-... +-.+.
T Consensus 332 ~~~~~~g~l-~n~iav~DvSGSM~~~------------------pm~vaia-Lgll~ae~~~~------------pf~~~ 379 (534)
T PF11443_consen 332 DYLKDSGSL-ENCIAVCDVSGSMSGP------------------PMDVAIA-LGLLIAELNKG------------PFKGR 379 (534)
T ss_pred HHHhccCCc-cceEEEEecCCccCcc------------------HHHHHHH-HHHHHHHhccc------------ccCCe
Confidence 345566654 4999999999999631 3333333 33333333211 11122
Q ss_pred cccccCCCCccCCHH--HHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCC----ccEEEEEEeCCcccc
Q 015549 171 VFSFYSGGRFCYGFE--EVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGG----QYHVLLIIADGQVTR 237 (405)
Q Consensus 171 vF~f~~~~p~~~G~e--gVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~----~Y~VLLIITDG~Itd 237 (405)
+.+|. ++|.+.-+. .+.+..+. +.....++-|+|..|.+.+.+.+.+.+. -.--|+||+|=+.+.
T Consensus 380 ~ITFs-~~P~~~~i~g~~l~ekv~~-~~~~~wg~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfV~SDMeFD~ 450 (534)
T PF11443_consen 380 FITFS-ENPQLHKIKGDTLREKVRF-IRRMDWGMNTNFQAVFDLILETAVKNKLKQEDMPKRLFVFSDMEFDQ 450 (534)
T ss_pred EEeec-CCceEEEecCCCHHHHHHH-HHhCCcccCCcHHHHHHHHHHHHHHcCCChHHCCceEEEEecccccc
Confidence 33443 223332111 23333333 2344567899999999999998876542 134579999877654
No 72
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=35.20 E-value=1.7e+02 Score=31.01 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=58.8
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCcc
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~~ 181 (405)
.++|-+|.|+||.|- . +-|..-+.++ -+.+.- .-+|-||.+.+...+++. .
T Consensus 220 ~lvvL~DVSGSm~~y-----s-----------~~~L~l~hAl---~q~~~R---~~~F~F~TRLt~vT~~l~-------~ 270 (395)
T COG3552 220 PLVVLCDVSGSMSGY-----S-----------RIFLHLLHAL---RQQRSR---VHVFLFGTRLTRVTHMLR-------E 270 (395)
T ss_pred CeEEEEecccchhhh-----H-----------HHHHHHHHHH---Hhcccc---eeEEEeechHHHHHHHhc-------c
Confidence 478999999999641 1 2233333222 344443 349999998765444322 2
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC-CccEEEEEEeCCcccc
Q 015549 182 YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG-GQYHVLLIIADGQVTR 237 (405)
Q Consensus 182 ~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~-~~Y~VLLIITDG~Itd 237 (405)
.+.+..+.+-...+. ..+|-|-..+.+.+-.+.-..+. ..=-++||+|||--.|
T Consensus 271 rD~~~Al~~~~a~v~--dw~ggTrig~tl~aF~~~~~~~~L~~gA~VlilsDg~drd 325 (395)
T COG3552 271 RDLEDALRRLSAQVK--DWDGGTRIGNTLAAFLRRWHGNVLSGGAVVLILSDGLDRD 325 (395)
T ss_pred CCHHHHHHHHHhhcc--cccCCcchhHHHHHHHccccccccCCceEEEEEecccccC
Confidence 345555544443332 35677887776665544422221 1225679999996544
No 73
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=35.16 E-value=1.6e+02 Score=29.24 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhcCCccEEEEE--EeCCccccccccccCCCChhHHHHHHHHHHhcCCC----cEEEEEecc
Q 015549 207 APVIEMAMSIVEQSGGQYHVLLI--IADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELP----LSIVLVGVG 273 (405)
Q Consensus 207 aPVI~~ai~i~~~s~~~Y~VLLI--ITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS~lP----LSIIiVGVG 273 (405)
+-.++++++.+++......|.++ ..-|.-. ..++++||..+...+ .=+|||+=|
T Consensus 25 gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A-------------~~~I~~al~~~~~~~~~~~~Dviii~RG 84 (319)
T PF02601_consen 25 GAAIQDFLRTLKRRNPIVEIILYPASVQGEGA-------------AASIVSALRKANEMGQADDFDVIIIIRG 84 (319)
T ss_pred hHHHHHHHHHHHHhCCCcEEEEEeccccccch-------------HHHHHHHHHHHHhccccccccEEEEecC
Confidence 45667777777765433444443 2334322 578999999998765 778888764
No 74
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=34.80 E-value=4.6e+02 Score=28.29 Aligned_cols=69 Identities=17% Similarity=0.299 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEe---ccCCCcc
Q 015549 207 APVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVG---VGDGPWD 278 (405)
Q Consensus 207 aPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS~lPLSIIiVG---VGd~~F~ 278 (405)
.-||+.+++.+++.+ ..||++-|-.||+.- .---|-=..|....+..|.+.-.+|..-||.| +|--.|.
T Consensus 27 p~VieAAl~~a~~~~--~pvLiEAT~NQVnq~-GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq 98 (426)
T PRK15458 27 PLVLEAAIRYALAND--SPLLIEATSNQVDQF-GGYTGMTPADFRGFVCQLADSLNFPQEALILGGDHLGPNRWQ 98 (426)
T ss_pred HHHHHHHHHHHhhcC--CcEEEEecccccccc-CCcCCCCHHHHHHHHHHHHHHcCCChhhEEeecCCCCCcccc
Confidence 468999999998864 588888888888641 11122334578888999999999999777766 3444466
No 75
>PTZ00081 enolase; Provisional
Probab=33.67 E-value=3.9e+02 Score=28.61 Aligned_cols=67 Identities=19% Similarity=0.352 Sum_probs=42.0
Q ss_pred cccccHHHHHHHHHHcCcceeceEEEEecCCCCCcCCC-CCCCCCCccccC---C--CCCHHHHHHHHHhhhccccC
Q 015549 81 DDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGK-RSFNRRSLHYIG---D--GLNPYEQAISIIGKTLAVFD 151 (405)
Q Consensus 81 ~~ys~ld~V~~aL~~~Gle~~nliVaIDFT~SN~~~g~-~s~~~~SLH~i~---~--~~N~YqqAI~~Ig~vl~~yD 151 (405)
+.-.-|+.|.+|.+++|++ -.+.+|||+-+|.-+..+ ..|+ +.+.. . ..-.-++.|+-+.+.++.|+
T Consensus 226 ~~eeal~ll~eAi~~ag~~-~~v~i~lD~Aase~~~~~~~~Y~---~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~ 298 (439)
T PTZ00081 226 DPEEALDLLVEAIKKAGYE-GKVKICMDVAASEFYDKEKKVYD---LDFKNPNNDKSNKLTGEELVELYLDLVKKYP 298 (439)
T ss_pred CHHHHHHHHHHHHHHcCCc-CceEEEEehhhhhhhhccCCcee---eeeccccCccccccCHHHHHHHHHHHHhcCC
Confidence 3445578889999999999 479999999998654210 0011 10011 0 12345777777777887774
No 76
>PRK00077 eno enolase; Provisional
Probab=32.98 E-value=4.6e+02 Score=27.71 Aligned_cols=63 Identities=19% Similarity=0.403 Sum_probs=40.3
Q ss_pred ccccHHHHHHHHHHcCcce-eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccC
Q 015549 82 DYKSLDQVTEALARAGLES-SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD 151 (405)
Q Consensus 82 ~ys~ld~V~~aL~~~Gle~-~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD 151 (405)
+-.-|+.|.+|++++|++. -.+.++||+.+|--|... .++ +-+.. =..++++..+.++++.|+
T Consensus 215 ~~e~l~~lreAi~~ag~~~G~di~l~lD~aas~~~~~~-~y~-----~~~~~-~s~~e~~~~~~~l~e~y~ 278 (425)
T PRK00077 215 NEEALDLILEAIEKAGYKPGEDIALALDCAASEFYKDG-KYV-----LEGEG-LTSEEMIDYLAELVDKYP 278 (425)
T ss_pred hHHHHHHHHHHHHHhcCCCCCceEEEEehhhhhcccCC-eee-----ccCCc-CCHHHHHHHHHHHHhhCC
Confidence 3445788889999999883 368999999888433100 111 10111 124788888888888775
No 77
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=32.01 E-value=2.9e+02 Score=29.26 Aligned_cols=109 Identities=22% Similarity=0.296 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEe---ccCCCccccccc
Q 015549 207 APVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVG---VGDGPWDMMKEF 283 (405)
Q Consensus 207 aPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS~lPLSIIiVG---VGd~~F~~M~~L 283 (405)
.=||+.+++.+..+. --||+=-|..||+. +..--|--..|....+.+|.+.-.+|..-+|.| +|-.+|..+.
T Consensus 27 PlViEAAl~~a~~~~--~~vLIEAT~NQVnq-~GGYTGMTP~DFr~fV~aiA~~~gfp~e~liLGGDHLGPN~Wq~~p-- 101 (426)
T COG4573 27 PLVIEAALRFARASQ--TPVLIEATSNQVNQ-FGGYTGMTPADFRGFVFAIADKLGFPRERLILGGDHLGPNPWQHLP-- 101 (426)
T ss_pred HHHHHHHHHHHhccC--CceEeecccccccc-cCCcCCCChHHHHHHHHHHHHHhCCcHHHHhccCCcCCCCccccCC--
Confidence 348999999887664 35655567666653 112223345688999999999999999999887 3333443211
Q ss_pred CCCCCCccccceecccchhhhcccCCcchhHHHHHHHHHHHhHHHHHHHHHhcc----cCCCCCCCCCCCCCCCC
Q 015549 284 DDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNI----LGRRKGNVPERVALPPP 354 (405)
Q Consensus 284 Dd~l~~R~rDNvQFV~f~di~~k~~~~~~~d~~LA~~~L~EIP~Ql~ay~~l~i----L~~~~~~~~~~~~~~~~ 354 (405)
|.++|++--.-+++|.+.|. |.+..+-+-+++||++=
T Consensus 102 ----------------------------------A~eAM~ka~~mv~AYv~AGF~KIHLDaSM~CA~dp~pL~d~ 142 (426)
T COG4573 102 ----------------------------------AAEAMAKADDLVKAYVAAGFTKIHLDASMSCAGDPIPLDDE 142 (426)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHcCceeeecccccccCCCCCCCCcH
Confidence 22444444455677777654 78888888888888653
No 78
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=31.69 E-value=3.9e+02 Score=24.89 Aligned_cols=61 Identities=23% Similarity=0.283 Sum_probs=30.9
Q ss_pred ceeecCCCChHHHHHHHHHHHHhcCCccEEEEE-EeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccCC
Q 015549 197 NLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLI-IADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDG 275 (405)
Q Consensus 197 ~v~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLI-ITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS~lPLSIIiVGVGd~ 275 (405)
.|-|-|.+. .|++++.+..++. |.-|-| -.+|-.++ .++++.++.|.++ .=-|+|||+|.-
T Consensus 50 ~vfllG~~~--~v~~~~~~~l~~~---yP~l~i~g~~g~f~~----------~~~~~i~~~I~~s---~~dil~VglG~P 111 (177)
T TIGR00696 50 PIFLYGGKP--DVLQQLKVKLIKE---YPKLKIVGAFGPLEP----------EERKAALAKIARS---GAGIVFVGLGCP 111 (177)
T ss_pred eEEEECCCH--HHHHHHHHHHHHH---CCCCEEEEECCCCCh----------HHHHHHHHHHHHc---CCCEEEEEcCCc
Confidence 344445442 3666666666553 322211 12555542 1245556666543 245888888863
No 79
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=31.41 E-value=1.2e+02 Score=32.11 Aligned_cols=67 Identities=19% Similarity=0.380 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCCccEEEEE--EeCCccccccccccCCCChhHHHHHHHHHHhcCCC-cEEEEEeccCCCccccccc
Q 015549 207 APVIEMAMSIVEQSGGQYHVLLI--IADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELP-LSIVLVGVGDGPWDMMKEF 283 (405)
Q Consensus 207 aPVI~~ai~i~~~s~~~Y~VLLI--ITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS~lP-LSIIiVGVGd~~F~~M~~L 283 (405)
+-+|+++++.++...-...|.|+ ..-|.-. ..+++++|..+...+ +=+||||-|+|..+.|--|
T Consensus 140 ~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a-------------~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~F 206 (432)
T TIGR00237 140 GAALADILHILKRRDPSLKVVIYPTLVQGEGA-------------VQSIVESIELANTKNECDVLIVGRGGGSLEDLWSF 206 (432)
T ss_pred cHHHHHHHHHHHhhCCCceEEEecccccCccH-------------HHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhc
Confidence 34677777777665322333332 3334322 467888888777655 7889999999999999888
Q ss_pred CCC
Q 015549 284 DDN 286 (405)
Q Consensus 284 Dd~ 286 (405)
|+.
T Consensus 207 n~e 209 (432)
T TIGR00237 207 NDE 209 (432)
T ss_pred CcH
Confidence 863
No 80
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=31.33 E-value=1.1e+02 Score=30.76 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCcceece-EEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCC
Q 015549 86 LDQVTEALARAGLESSNL-IVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDA 164 (405)
Q Consensus 86 ld~V~~aL~~~Gle~~nl-iVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~ 164 (405)
|.|...-+...+.. +|+ +++.||+++-..+|+++ ..|.|+.+-...--+-+.|-.+..|=+||+.--
T Consensus 73 lgq~~~~~~~l~~~-ln~nv~~~DYSGyG~S~G~ps-----------E~n~y~Di~avye~Lr~~~g~~~~Iil~G~SiG 140 (258)
T KOG1552|consen 73 LGQMVELFKELSIF-LNCNVVSYDYSGYGRSSGKPS-----------ERNLYADIKAVYEWLRNRYGSPERIILYGQSIG 140 (258)
T ss_pred hHHHHHHHHHHhhc-ccceEEEEecccccccCCCcc-----------cccchhhHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 34544444444444 455 78999999988777644 247777766666667778877888999999643
No 81
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=30.92 E-value=3.1e+02 Score=26.12 Aligned_cols=161 Identities=13% Similarity=0.166 Sum_probs=81.6
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccC--CCCccceEeecCCCC------C---CCC
Q 015549 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD--EDNLIPCYGFGDAST------H---DQD 170 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD--~D~~ip~yGFGa~~~------~---~~~ 170 (405)
.+++.||.|..- +. ....+.+++.|...|.... ++.+|-+..|+...+ + .+.
T Consensus 5 ~~vFvID~s~~a---------------i~--~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~ 67 (239)
T cd01468 5 VFVFVIDVSYEA---------------IK--EGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKM 67 (239)
T ss_pred EEEEEEEcchHh---------------cc--ccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeE
Confidence 468899988642 11 2345677777777777665 777888888876532 0 001
Q ss_pred -cccccCCCC-------ccCCHHHH---HHHHHhhCCcee-----ecCCCChHHHHHHHHHHHHhc--CCccEEEEEEeC
Q 015549 171 -VFSFYSGGR-------FCYGFEEV---LSRYREIVPNLK-----LAGPTSFAPVIEMAMSIVEQS--GGQYHVLLIIAD 232 (405)
Q Consensus 171 -vF~f~~~~p-------~~~G~egV---l~aYr~~l~~v~-----LsGPT~FaPVI~~ai~i~~~s--~~~Y~VLLIITD 232 (405)
|++ +.+++ .+..+.+. ++..-+.++... -....++.+.|+.|..+.+.. +|+ | ++++.
T Consensus 68 ~v~~-dl~d~f~p~~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~gGk--I-~~f~s 143 (239)
T cd01468 68 YVVS-DLKDVFLPLPDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTFAGGR--I-IVFQG 143 (239)
T ss_pred EEeC-CCccCcCCCcCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcCCCce--E-EEEEC
Confidence 110 11121 11122222 222222222221 123589999999999999887 553 3 34444
Q ss_pred Cccc-------ccccccc-------CCCChhHHHHHHHHHHhcCCCcEEEEEeccCC--Cccccccc
Q 015549 233 GQVT-------RSVDTVR-------GCLSPQEQKTVDAIVKASELPLSIVLVGVGDG--PWDMMKEF 283 (405)
Q Consensus 233 G~It-------ds~d~~~-------~~~~~d~~eTi~aIv~AS~lPLSIIiVGVGd~--~F~~M~~L 283 (405)
|-.+ ..-+.++ .-+.+..+--.+.-.++++.-+|+=+...+.. +...|..|
T Consensus 144 g~pt~GpG~l~~~~~~~~~~~~~e~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l 210 (239)
T cd01468 144 GLPTVGPGKLKSREDKEPIRSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQL 210 (239)
T ss_pred CCCCCCCCccccCcccccCCCccchhcccccHHHHHHHHHHHHHcCeEEEEEeccccccCHHHhhhh
Confidence 4332 2101001 11233333334455666667777766666553 44445544
No 82
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=29.24 E-value=57 Score=35.41 Aligned_cols=41 Identities=20% Similarity=0.380 Sum_probs=26.0
Q ss_pred EEE-EEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEE
Q 015549 225 HVL-LIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVL 269 (405)
Q Consensus 225 ~VL-LIITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS~lPLSIIi 269 (405)
.|. |+.|||.|+|. .+...-.-++++++.+.+. +.|.=|++
T Consensus 146 tIgivVtTDgsi~dI---~Re~y~~aEe~~i~eLk~~-~kPfiivl 187 (492)
T TIGR02836 146 TIGVVVTTDGTITDI---PREDYVEAEERVIEELKEL-NKPFIILL 187 (492)
T ss_pred cEEEEEEcCCCcccc---ccccchHHHHHHHHHHHhc-CCCEEEEE
Confidence 454 55559998863 3455556678888888754 66654443
No 83
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=28.02 E-value=6.8e+02 Score=27.03 Aligned_cols=71 Identities=23% Similarity=0.304 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEe---ccCCCcccc
Q 015549 207 APVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVG---VGDGPWDMM 280 (405)
Q Consensus 207 aPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS~lPLSIIiVG---VGd~~F~~M 280 (405)
.-||+.+++.+++.+ ..||++-|-.||+.- .--.|--..|....+..|.+.-.+|..-||.| +|--.|..+
T Consensus 24 p~VieAAl~~a~~~~--~pvLiEAT~NQVdq~-GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~ 97 (421)
T PRK15052 24 PLVIEAALAFDLNST--RKVLIEATSNQVNQF-GGYTGMTPADFREFVYGIADKVGFPRERIILGGDHLGPNCWQQE 97 (421)
T ss_pred HHHHHHHHHHHhhcC--CcEEEEecccccccc-CCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCccccCC
Confidence 458999999998864 688888888888641 11122334577888999999999999777766 333346554
No 84
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=27.33 E-value=5.8e+02 Score=27.55 Aligned_cols=69 Identities=25% Similarity=0.417 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEe---ccCCCcc
Q 015549 207 APVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVG---VGDGPWD 278 (405)
Q Consensus 207 aPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS~lPLSIIiVG---VGd~~F~ 278 (405)
.-||+.+++.+++.+ ..||++-|-.||+.- .--.|-=..|....+..|.+.-.+|..-||.| +|--.|.
T Consensus 23 p~VieAAl~~a~~~~--~pvLiEAT~NQVnq~-GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq 94 (420)
T TIGR02810 23 PLVLEAAIRRARASG--TPVLIEATSNQVNQF-GGYTGMTPADFRDFVETIADRIGFPRDRLILGGDHLGPNPWQ 94 (420)
T ss_pred HHHHHHHHHHHhhcC--CcEEEEecccccccc-CCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCcccc
Confidence 468999999998864 688888888888641 11122334577888999999999999777776 3444476
No 85
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=26.36 E-value=3e+02 Score=27.95 Aligned_cols=76 Identities=16% Similarity=0.255 Sum_probs=48.9
Q ss_pred CHHHHHHHHHhh-----CCceeecCCCChHHHHHHHHHHHHhcCCc-cEEEEEEeCCccccccccccCCCChhHHHHHHH
Q 015549 183 GFEEVLSRYREI-----VPNLKLAGPTSFAPVIEMAMSIVEQSGGQ-YHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDA 256 (405)
Q Consensus 183 G~egVl~aYr~~-----l~~v~LsGPT~FaPVI~~ai~i~~~s~~~-Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~a 256 (405)
|+...++.+++. +-.|++.- -+...+++++.++.++.+.. -++.+|++||-++ ++.++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~gvR~DS-Gd~~~~~~~~~~~l~~~g~~~~~~~ii~sg~l~~--------------~~~i~~ 311 (343)
T cd01567 247 GFLNALKLAKALGAGGGLLGVRLDS-GDPVELIKKVRKHLDELGIDLNKKKIIISGDLDT--------------EEAIEL 311 (343)
T ss_pred HHHHHHHHHHhhcccCCCcEEECCC-CCHHHHHHHHHHHHHHcCCCCCCeEEEEECCCCH--------------HHHHHH
Confidence 444455555554 33455543 36777888888888877652 2555888888653 356666
Q ss_pred HHHhcCCCcEEEEEeccCC
Q 015549 257 IVKASELPLSIVLVGVGDG 275 (405)
Q Consensus 257 Iv~AS~lPLSIIiVGVGd~ 275 (405)
+..+-. ..+++.|||..
T Consensus 312 ~~~~~~--~~~~~fGvGt~ 328 (343)
T cd01567 312 LLEQGA--SPNDAFGVGTS 328 (343)
T ss_pred HHHcCC--CcCcEEeeCcc
Confidence 766655 56788899983
No 86
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=23.08 E-value=4.6e+02 Score=24.40 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=26.7
Q ss_pred CceeecC--CCChHHHHHHHHHHHHhcCCccEEEEEEeCCccc
Q 015549 196 PNLKLAG--PTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVT 236 (405)
Q Consensus 196 ~~v~LsG--PT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~It 236 (405)
..|.|.| |+...+.+..+++.+++.+ .. +.|.|.|-..
T Consensus 67 ~~I~~~GGEPll~~~~~~~li~~~~~~g--~~-~~i~TNG~~~ 106 (235)
T TIGR02493 67 GGVTFSGGEPLLQPEFLSELFKACKELG--IH-TCLDTSGFLG 106 (235)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHCC--CC-EEEEcCCCCC
Confidence 3577775 8888888888888887754 22 3677999543
No 87
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=22.39 E-value=1.7e+02 Score=30.19 Aligned_cols=47 Identities=17% Similarity=0.354 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEE
Q 015549 207 APVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSI 267 (405)
Q Consensus 207 aPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS~lPLSI 267 (405)
..+|++..+++++++.++. +=|+.|+.- .|++.++.|.+.+++||+|
T Consensus 55 e~Li~~~~elsd~tg~p~~-~~v~~~~~e-------------am~k~I~~v~~~~d~Pl~I 101 (308)
T PRK00979 55 EALINRQEELSDKTGNPAL-LDVVGESPE-------------AMEKYIDFVSEITDLPFLI 101 (308)
T ss_pred HHHHHHHHHHHHHhCCCeE-EEEecChHH-------------HHHHHHHHHHhcCCCCEEE
Confidence 3467777888888766544 466666643 2899999999999999986
No 88
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=22.20 E-value=3.7e+02 Score=26.94 Aligned_cols=172 Identities=20% Similarity=0.396 Sum_probs=95.9
Q ss_pred ccccHHHHHHHHHHcCcce-----eceEEEEecCCCCCcCCCCCCCCCCccccCC----CCCHHHHHHHHHhhhccccCC
Q 015549 82 DYKSLDQVTEALARAGLES-----SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGD----GLNPYEQAISIIGKTLAVFDE 152 (405)
Q Consensus 82 ~ys~ld~V~~aL~~~Gle~-----~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~----~~N~YqqAI~~Ig~vl~~yD~ 152 (405)
.+.+=.+.-..|+..|.+. +++|=|+.|-+=-+.-.+-+.+-++|- ++. ..|+|++++++|-..+-+...
T Consensus 58 ~~dTP~~aL~klk~~gy~eviiQ~lhiIpG~EyEklvr~V~~~~~dF~~lk-ig~PlLy~k~DYe~~v~aik~~~ppl~k 136 (265)
T COG4822 58 DFDTPIQALNKLKDQGYEEVIIQPLHIIPGIEYEKLVREVNKYSNDFKRLK-IGRPLLYYKNDYEICVEAIKDQIPPLNK 136 (265)
T ss_pred ccCCHHHHHHHHHHccchheeeeeeeecCchHHHHHHHHHHHHhhhhheee-cCCceeechhhHHHHHHHHHHhcCCcCc
Confidence 3556666667777888774 344445544321000000000001221 221 249999999999999999998
Q ss_pred CCccceEeecCCCCCCCCcccccCCCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCC-ccEEE-EEE
Q 015549 153 DNLIPCYGFGDASTHDQDVFSFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGG-QYHVL-LII 230 (405)
Q Consensus 153 D~~ip~yGFGa~~~~~~~vF~f~~~~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~-~Y~VL-LII 230 (405)
|...=..|-|....-. .+. .=++-++..|+ +..|.+.. +.=-|-+..+++..++++- .-++. |.+
T Consensus 137 ~e~~vlmgHGt~h~s~-~~Y---------acLd~~~~~~~--f~~v~v~~-ve~yP~~d~vi~~l~~~~~~~v~L~PlMl 203 (265)
T COG4822 137 DEILVLMGHGTDHHSN-AAY---------ACLDHVLDEYG--FDNVFVAA-VEGYPLVDTVIEYLRKNGIKEVHLIPLML 203 (265)
T ss_pred CeEEEEEecCCCccHH-HHH---------HHHHHHHHhcC--CCceEEEE-ecCCCcHHHHHHHHHHcCCceEEEeeeEE
Confidence 8888788888754321 111 11334444332 11222221 2223566777888777642 23332 556
Q ss_pred eCCc--cccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccCC
Q 015549 231 ADGQ--VTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDG 275 (405)
Q Consensus 231 TDG~--Itds~d~~~~~~~~d~~eTi~aIv~AS~lPLSIIiVGVGd~ 275 (405)
+-|. +.|+. .|-+.+-+.|.++..++.-..+=|+|.-
T Consensus 204 vAG~Ha~nDMa--------sddedswk~il~~~G~~v~~~l~GLGE~ 242 (265)
T COG4822 204 VAGDHAKNDMA--------SDDEDSWKNILEKNGFKVEVYLHGLGEN 242 (265)
T ss_pred eechhhhhhhc--------ccchHHHHHHHHhCCceeEEEeecCCCc
Confidence 6664 55532 1233777888888999999999999963
No 89
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=21.94 E-value=3.5e+02 Score=29.65 Aligned_cols=137 Identities=19% Similarity=0.275 Sum_probs=79.6
Q ss_pred eEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhh-hccccCCCCccceEeecCCCCCCCCcccccCCCCcc
Q 015549 103 LIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGK-TLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (405)
Q Consensus 103 liVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~-vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~~ 181 (405)
+++-+|+|-||-..|+ --|-.|+--++.. |...|--| .+.+..||.... +|
T Consensus 466 vallvDtS~SM~~eGR--------------w~PmKQtALALhHLv~TrfrGD-~l~~i~Fgr~A~---~v---------- 517 (652)
T COG4867 466 VALLVDTSFSMVMEGR--------------WLPMKQTALALHHLVCTRFRGD-ALQIIAFGRYAR---TV---------- 517 (652)
T ss_pred eeeeeeccHHHHHhcc--------------CCchHHHHHHHHHHHHhcCCCc-ceEEEeccchhc---cc----------
Confidence 5677899999965442 1122333333333 55566655 466777776321 11
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccC-------CCCh-hHHHH
Q 015549 182 YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRG-------CLSP-QEQKT 253 (405)
Q Consensus 182 ~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~-------~~~~-d~~eT 253 (405)
-++++ ..++.|.-.| ||.+.-+.-|-++.+...+.-.++||||||..+-......| -++| -+-.|
T Consensus 518 -~v~eL-----t~l~~v~eqg-TNlhhaL~LA~r~l~Rh~~~~~~il~vTDGePtAhle~~DG~~~~f~yp~DP~t~~~T 590 (652)
T COG4867 518 -TAAEL-----TGLAGVYEQG-TNLHHALALAGRHLRRHAGAQPVVLVVTDGEPTAHLEDGDGTSVFFDYPPDPRTIAHT 590 (652)
T ss_pred -CHHHH-----hcCCCccccc-cchHHHHHHHHHHHHhCcccCceEEEEeCCCccccccCCCCceEecCCCCChhHHHHH
Confidence 11221 1223333223 89999999998888887777788899999998754332223 2222 24566
Q ss_pred HHHHHHhcCCCcEEEEEeccC
Q 015549 254 VDAIVKASELPLSIVLVGVGD 274 (405)
Q Consensus 254 i~aIv~AS~lPLSIIiVGVGd 274 (405)
+..+-++.+.-+-|-+.=+|.
T Consensus 591 vr~~d~~~r~G~q~t~FrLg~ 611 (652)
T COG4867 591 VRGFDDMARLGAQVTIFRLGS 611 (652)
T ss_pred HHHHHHHHhccceeeEEeecC
Confidence 666666666666666655554
No 90
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=21.76 E-value=3.1e+02 Score=22.45 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=31.3
Q ss_pred CCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCC-ChhHHHHHHHHHHhcCCCcEEEEEecc
Q 015549 203 PTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCL-SPQEQKTVDAIVKASELPLSIVLVGVG 273 (405)
Q Consensus 203 PT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~-~~d~~eTi~aIv~AS~lPLSIIiVGVG 273 (405)
+.....+++.+.+..++.. .++||| |.. +. | +.+.-+.+..+.+ ...+.+|+||.-
T Consensus 69 ~~~~~~l~~~~~~~l~~~~---~~~lvi-De~-~~--------l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 RQTSDELRSLLIDALDRRR---VVLLVI-DEA-DH--------LFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp TS-HHHHHHHHHHHHHHCT---EEEEEE-ETT-HH--------HHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred cCCHHHHHHHHHHHHHhcC---CeEEEE-eCh-Hh--------cCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 4567777777777777653 244554 442 11 2 2233333433443 788889998864
No 91
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=21.65 E-value=3.7e+02 Score=28.31 Aligned_cols=145 Identities=17% Similarity=0.259 Sum_probs=76.0
Q ss_pred HcCcceeceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccc
Q 015549 95 RAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSF 174 (405)
Q Consensus 95 ~~Gle~~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f 174 (405)
+.|+- -+|+|.||+|..+... .+ .+|-..-+|+-+-..+..|=+.+-|.-.||=..-..-.+..+-
T Consensus 56 r~Gii-Rhl~iviD~S~am~e~--------Df-----~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~ 121 (378)
T KOG2807|consen 56 RKGII-RHLYIVIDCSRAMEEK--------DF-----RPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTD 121 (378)
T ss_pred hhhhh-eeEEEEEEhhhhhhhc--------cC-----CchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHH
Confidence 45666 4899999999999642 22 2455666666666655555556666666663211111111110
Q ss_pred cCCCCccCCHHHHHHHHHhhCCcee-ecCCCChHHHHHHHHHHHHhcCCc--cEEEEEEeCCccccccccccCCCChhHH
Q 015549 175 YSGGRFCYGFEEVLSRYREIVPNLK-LAGPTSFAPVIEMAMSIVEQSGGQ--YHVLLIIADGQVTRSVDTVRGCLSPQEQ 251 (405)
Q Consensus 175 ~~~~p~~~G~egVl~aYr~~l~~v~-LsGPT~FaPVI~~ai~i~~~s~~~--Y~VLLIITDG~Itds~d~~~~~~~~d~~ 251 (405)
-..+ .+-- .++|..+. -+|--+.--.++.|++..+.-.++ =-||+|+.-=...|- -|.-
T Consensus 122 ltgn-----p~~h----I~aL~~~~~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DP---------gdi~ 183 (378)
T KOG2807|consen 122 LTGN-----PRIH----IHALKGLTECSGDFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDP---------GDIY 183 (378)
T ss_pred hcCC-----HHHH----HHHHhcccccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCc---------ccHH
Confidence 0011 1112 23333333 344444445556666555554332 357777765444442 2478
Q ss_pred HHHHHHHHhcCCCcEEEEEeccC
Q 015549 252 KTVDAIVKASELPLSIVLVGVGD 274 (405)
Q Consensus 252 eTi~aIv~AS~lPLSIIiVGVGd 274 (405)
+||+.++.. + |=+-+||+-.
T Consensus 184 ~tI~~lk~~-k--IRvsvIgLsa 203 (378)
T KOG2807|consen 184 ETIDKLKAY-K--IRVSVIGLSA 203 (378)
T ss_pred HHHHHHHhh-C--eEEEEEeech
Confidence 999999843 3 4455567654
No 92
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=20.96 E-value=1.3e+02 Score=26.20 Aligned_cols=57 Identities=12% Similarity=0.327 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccCCCcccc
Q 015549 209 VIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMM 280 (405)
Q Consensus 209 VI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS~lPLSIIiVGVGd~~F~~M 280 (405)
.+.++.+...+. .|-| +|||+.-..+ +.+.++.+...+.+|+.+.|=+.|...-..+
T Consensus 34 ~~~~~~~~l~~~--~~~i-Iiite~~a~~------------i~~~i~~~~~~~~~P~iv~IPs~~~~~~~~~ 90 (104)
T COG1436 34 ELRAALRVLAED--DVGI-ILITEDLAEK------------IREEIRRIIRSSVLPAIVEIPSPGKEEEEPL 90 (104)
T ss_pred HHHHHHHhhccC--CceE-EEEeHHHHhh------------hHHHHHHHhhccCccEEEEeCCCCCCccchH
Confidence 445555444443 5666 6777776665 7889999999999999888765444443333
No 93
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=20.48 E-value=3.8e+02 Score=27.04 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=31.7
Q ss_pred eecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCc--EEEEEeccCC
Q 015549 199 KLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPL--SIVLVGVGDG 275 (405)
Q Consensus 199 ~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS~lPL--SIIiVGVGd~ 275 (405)
-+.+++....+.+.+.+..+..+-.+.+ +++.+|+-+. ..+...+++..+.+... .=.|||||+|
T Consensus 29 ivtd~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~e~~~-----------~~~~v~~~~~~~~~~~~~r~d~IIaiGGG 95 (345)
T cd08195 29 IVTDENVAPLYLEKLKAALEAAGFEVEV-IVIPAGEASK-----------SLETLEKLYDALLEAGLDRKSLIIALGGG 95 (345)
T ss_pred EEECCchHHHHHHHHHHHHHhcCCceEE-EEeCCCCCcC-----------CHHHHHHHHHHHHHcCCCCCCeEEEECCh
Confidence 4556666555555555555554433433 3455565442 13333333333444443 1356677665
Done!