BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015554
         (405 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P47037|SMC3_YEAST Structural maintenance of chromosomes protein 3 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=SMC3 PE=1
           SV=1
          Length = 1230

 Score = 36.2 bits (82), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 103/203 (50%), Gaps = 28/203 (13%)

Query: 93  EEAKLREAASLEKHVLLK-KLRDALESLRGRVAGRNKDD--VEEAIAMVEALAVQLTQ-- 147
           ++AKLRE+   +K   +  K++D  + +      RN D   ++E  +++E    +L++  
Sbjct: 297 QQAKLRESEISQKLTNVNVKIKDVQQQIESNEEQRNLDSATLKEIKSIIEQRKQKLSKIL 356

Query: 148 -REGELIQEKAEVK--------KLADFLKKASEDAK-KLVDEERAFARAEIESARAAVQR 197
            R  EL +E+A  K        K  D + K  E A+ K  DE   +  +EIE  ++++Q 
Sbjct: 357 PRYQELTKEEAMYKLQLASLQQKQRDLILKKGEYARFKSKDERDTWIHSEIEELKSSIQN 416

Query: 198 VEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQP---SKVMDMEHELRALRIQLA 254
           + E L+   QM R S ++ +  + +E++E   I  ++ P    ++ D + EL  L+ +L+
Sbjct: 417 LNE-LESQLQMDRTSLRKQYSAIDEEIEEL--IDSINGPDTKGQLEDFDSELIHLKQKLS 473

Query: 255 EKSKCSLLLRKELAMSKRIEEKL 277
           E    SL  RKEL    R E+KL
Sbjct: 474 E----SLDTRKELW---RKEQKL 489


>sp|Q5ZIB2|FBF1_CHICK Fas-binding factor 1 homolog OS=Gallus gallus GN=FBF1 PE=2 SV=1
          Length = 1132

 Score = 34.7 bits (78), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 9/118 (7%)

Query: 142  AVQL-TQREG---ELIQEKAEVKKLADFLKKASEDAKK---LVDEERAFARAEIESARAA 194
            A+QL +QREG    L +E+AE+K  +  LK   E   +   L+DE     R E E  + A
Sbjct: 904  ALQLDSQREGTIMSLAKEQAELKVRSRELKVKEEQLARDRLLLDEAWHELRLEKEKVKGA 963

Query: 195  VQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQ 252
              R+ +  +E + MS+ S  Q +EE  + +Q+A RI+  HQ +++  M+  L  L+ Q
Sbjct: 964  TLRIRQQEEEIKNMSKLSA-QKYEEGERALQDACRIESEHQ-ARLQVMQQHLEQLKQQ 1019


>sp|Q9ESK9|RBCC1_MOUSE RB1-inducible coiled-coil protein 1 OS=Mus musculus GN=Rb1cc1 PE=1
            SV=3
          Length = 1588

 Score = 32.7 bits (73), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 29/179 (16%)

Query: 111  KLRDALESLRGRVAGRNKDDV-------EEAIAMVEALAVQ-LTQREGELIQEKAEVKKL 162
            KL++ L SL    A +NKD+        ++AI  V+    Q L + E  +  +  E+K+L
Sbjct: 893  KLKENLVSLEE--ALQNKDNEFTSIKHEKDAIVCVQQEKDQKLLEMEKIMHTQHCEIKEL 950

Query: 163  ADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEES-LQEHEQMSRASGKQDFEELM 221
                + A ED KKL DE       +IES RA  Q +E++ L+E E        Q+FE++M
Sbjct: 951  KQSREMALEDLKKLHDE-------KIESLRAEFQCLEQNHLKELEDTLHIRHTQEFEKVM 1003

Query: 222  ----------KEVQEARRIKMLH-QPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAM 269
                      K+  + R  +ML    S + + E +L+ L++++++ S     L  ELA+
Sbjct: 1004 TDHNMSLEKLKKENQQRIDQMLESHASTIQEKEQQLQELKLKVSDLSDMRCKLEVELAL 1062


>sp|Q0V9R4|CCD39_XENTR Coiled-coil domain-containing protein 39 OS=Xenopus tropicalis
           GN=ccdc39 PE=2 SV=1
          Length = 945

 Score = 32.3 bits (72), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 29/175 (16%)

Query: 52  LSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKK 111
           L  KE + +E  Q L+     S  D   ++EK ++AA +  + AKLR     E+ ++  +
Sbjct: 255 LREKESIIKEKIQFLQ-----SEIDNNKEYEKKISAAER--QAAKLRLELQ-EQEIIRGR 306

Query: 112 LRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASE 171
           L+D L+SL+G V  R   D+E     V +L   +  R+  L   +     L+D L   +E
Sbjct: 307 LQDELDSLKG-VVDRTASDLETMRTEVTSLKKDIRNRQNRLQMAQEYNDGLSDKLNFVTE 365

Query: 172 DAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQE 226
            A  L  EERA              R+EE  +E E+  +     D E  +K+++E
Sbjct: 366 SALSL--EERAL-------------RMEEMFKEQEKTVK-----DLEVQLKQIRE 400


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.129    0.349 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,625,600
Number of Sequences: 539616
Number of extensions: 5610003
Number of successful extensions: 26739
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 1709
Number of HSP's that attempted gapping in prelim test: 24014
Number of HSP's gapped (non-prelim): 3580
length of query: 405
length of database: 191,569,459
effective HSP length: 120
effective length of query: 285
effective length of database: 126,815,539
effective search space: 36142428615
effective search space used: 36142428615
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)