Query 015554
Match_columns 405
No_of_seqs 37 out of 39
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 07:23:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00409 recombination and DNA 91.1 3.1 6.8E-05 45.7 12.7 81 125-205 512-596 (782)
2 PF08317 Spc7: Spc7 kinetochor 86.1 37 0.0008 33.5 16.5 102 130-232 167-268 (325)
3 smart00787 Spc7 Spc7 kinetocho 84.7 31 0.00067 34.5 13.9 140 107-253 140-280 (312)
4 PRK04863 mukB cell division pr 84.4 1E+02 0.0022 37.1 20.4 91 183-274 380-472 (1486)
5 PRK08476 F0F1 ATP synthase sub 83.6 25 0.00055 30.8 11.5 21 104-124 24-44 (141)
6 TIGR01069 mutS2 MutS2 family p 83.5 17 0.00036 40.3 12.6 80 125-204 507-590 (771)
7 TIGR02169 SMC_prok_A chromosom 83.2 75 0.0016 34.7 17.4 6 350-355 644-649 (1164)
8 PRK09039 hypothetical protein; 82.4 58 0.0012 32.7 15.6 119 141-268 44-182 (343)
9 PF09726 Macoilin: Transmembra 82.0 28 0.00062 38.4 13.5 36 237-272 545-580 (697)
10 PRK13461 F0F1 ATP synthase sub 81.4 33 0.00071 30.1 11.4 50 105-158 23-72 (159)
11 PRK09174 F0F1 ATP synthase sub 80.5 47 0.001 31.2 12.8 77 104-187 70-146 (204)
12 PRK08476 F0F1 ATP synthase sub 79.4 43 0.00093 29.4 12.8 23 166-188 68-90 (141)
13 PF12777 MT: Microtubule-bindi 77.0 56 0.0012 32.4 12.7 99 131-239 10-118 (344)
14 TIGR01843 type_I_hlyD type I s 76.5 75 0.0016 30.6 15.2 24 245-268 247-270 (423)
15 PF12128 DUF3584: Protein of u 76.2 1.1E+02 0.0024 35.3 16.4 62 131-192 637-698 (1201)
16 PF05557 MAD: Mitotic checkpoi 75.4 50 0.0011 35.8 12.8 244 99-381 400-704 (722)
17 PF12325 TMF_TATA_bd: TATA ele 74.7 60 0.0013 28.7 13.2 87 134-228 14-109 (120)
18 TIGR01144 ATP_synt_b ATP synth 74.5 55 0.0012 28.0 11.5 48 105-156 13-60 (147)
19 KOG0994 Extracellular matrix g 74.4 1.8E+02 0.004 35.2 17.3 85 183-268 1644-1741(1758)
20 PRK07353 F0F1 ATP synthase sub 74.0 54 0.0012 27.8 12.8 51 104-158 22-72 (140)
21 PF14443 DBC1: DBC1 73.3 1.2 2.7E-05 39.8 0.3 15 301-316 54-68 (126)
22 TIGR02168 SMC_prok_B chromosom 73.1 1.4E+02 0.0031 32.3 20.8 8 33-40 130-137 (1179)
23 TIGR01843 type_I_hlyD type I s 73.1 43 0.00092 32.2 10.5 25 180-204 211-235 (423)
24 PRK13454 F0F1 ATP synthase sub 71.8 80 0.0017 28.8 15.3 78 105-189 49-126 (181)
25 TIGR03545 conserved hypothetic 71.1 1.6E+02 0.0034 32.0 15.1 98 109-223 173-270 (555)
26 PRK13428 F0F1 ATP synthase sub 67.8 1.2E+02 0.0026 31.6 13.1 15 105-119 19-33 (445)
27 PF14915 CCDC144C: CCDC144C pr 67.5 1.5E+02 0.0033 30.4 13.6 128 128-268 40-189 (305)
28 PRK13460 F0F1 ATP synthase sub 67.2 78 0.0017 28.4 10.3 48 105-156 34-81 (173)
29 PF00038 Filament: Intermediat 65.8 1.2E+02 0.0025 28.9 11.7 145 110-257 28-182 (312)
30 TIGR02169 SMC_prok_A chromosom 65.7 2.1E+02 0.0046 31.4 21.9 11 258-268 441-451 (1164)
31 TIGR01147 V_ATP_synt_G vacuola 65.2 98 0.0021 27.3 11.1 78 168-266 13-101 (113)
32 PRK06231 F0F1 ATP synthase sub 65.2 1.2E+02 0.0026 28.4 12.2 19 105-123 66-84 (205)
33 CHL00118 atpG ATP synthase CF0 64.6 1E+02 0.0022 27.2 13.5 20 105-124 40-59 (156)
34 PF04111 APG6: Autophagy prote 64.0 27 0.00059 34.7 7.4 84 261-345 123-234 (314)
35 PF03179 V-ATPase_G: Vacuolar 63.9 82 0.0018 26.0 12.2 32 166-197 9-40 (105)
36 TIGR01010 BexC_CtrB_KpsE polys 61.4 1.3E+02 0.0028 29.6 11.4 85 170-256 168-261 (362)
37 PRK10930 FtsH protease regulat 60.6 1.5E+02 0.0032 31.1 12.2 85 139-224 249-334 (419)
38 TIGR02168 SMC_prok_B chromosom 59.7 2.6E+02 0.0057 30.4 21.1 29 242-270 864-892 (1179)
39 TIGR03545 conserved hypothetic 59.2 40 0.00087 36.3 8.1 79 172-253 150-228 (555)
40 PRK13453 F0F1 ATP synthase sub 58.6 1.4E+02 0.003 26.9 10.6 71 105-193 36-106 (173)
41 cd07700 IgV_CD8_beta Immunoglo 58.2 48 0.001 26.7 6.7 65 289-357 5-74 (107)
42 TIGR00606 rad50 rad50. This fa 57.8 3.7E+02 0.008 31.5 16.9 16 125-140 821-836 (1311)
43 PF05957 DUF883: Bacterial pro 57.5 74 0.0016 25.8 7.7 48 159-206 11-58 (94)
44 PF09730 BicD: Microtubule-ass 57.4 3.3E+02 0.0072 30.8 16.2 99 141-255 39-146 (717)
45 COG1566 EmrA Multidrug resista 57.3 2E+02 0.0043 29.6 12.3 76 130-205 92-170 (352)
46 PF05529 Bap31: B-cell recepto 56.9 55 0.0012 29.5 7.5 31 211-256 157-187 (192)
47 PRK14473 F0F1 ATP synthase sub 56.7 1.4E+02 0.003 26.3 12.9 47 104-154 25-71 (164)
48 PRK06569 F0F1 ATP synthase sub 56.5 1E+02 0.0022 28.6 9.1 75 103-195 26-100 (155)
49 PF10186 Atg14: UV radiation r 56.4 1.7E+02 0.0036 27.0 13.9 10 348-357 223-232 (302)
50 PRK06568 F0F1 ATP synthase sub 56.3 1.6E+02 0.0035 26.9 11.5 77 107-190 24-100 (154)
51 KOG0161 Myosin class II heavy 55.5 5.3E+02 0.011 32.6 22.1 150 114-267 1403-1581(1930)
52 PRK09174 F0F1 ATP synthase sub 54.9 1.9E+02 0.0041 27.2 11.7 32 164-195 112-143 (204)
53 PRK05759 F0F1 ATP synthase sub 54.5 1.4E+02 0.0031 25.7 13.4 75 106-187 23-97 (156)
54 PRK14471 F0F1 ATP synthase sub 54.5 1.5E+02 0.0033 26.1 11.0 20 105-124 26-45 (164)
55 CHL00118 atpG ATP synthase CF0 54.3 1.5E+02 0.0034 26.1 11.0 19 169-187 86-104 (156)
56 KOG0161 Myosin class II heavy 54.2 5.5E+02 0.012 32.4 20.7 141 111-256 1034-1190(1930)
57 cd03407 Band_7_4 A subgroup of 53.4 1.5E+02 0.0033 28.0 10.1 72 128-205 142-213 (262)
58 PRK00106 hypothetical protein; 53.3 3.3E+02 0.0072 29.6 14.3 30 164-193 46-75 (535)
59 TIGR03825 FliH_bacil flagellar 53.1 2.1E+02 0.0046 27.3 12.5 26 166-191 46-71 (255)
60 PRK07352 F0F1 ATP synthase sub 52.7 1.7E+02 0.0037 26.1 11.2 31 165-195 79-109 (174)
61 PRK13455 F0F1 ATP synthase sub 51.4 1.9E+02 0.004 26.1 11.3 27 166-192 88-114 (184)
62 TIGR03007 pepcterm_ChnLen poly 51.4 2.6E+02 0.0056 28.4 12.0 78 178-256 210-294 (498)
63 PRK13460 F0F1 ATP synthase sub 51.1 1.8E+02 0.004 26.0 12.9 31 166-196 77-107 (173)
64 PRK03963 V-type ATP synthase s 51.0 1.4E+02 0.0031 26.8 9.1 36 163-198 9-44 (198)
65 PRK05759 F0F1 ATP synthase sub 50.6 1.6E+02 0.0036 25.3 11.0 30 165-194 64-93 (156)
66 PRK09173 F0F1 ATP synthase sub 50.4 1.8E+02 0.0038 25.6 11.2 31 166-196 63-93 (159)
67 PF03962 Mnd1: Mnd1 family; I 49.2 2E+02 0.0043 26.8 10.0 49 176-228 100-148 (188)
68 KOG0977 Nuclear envelope prote 48.7 4.1E+02 0.0089 29.3 18.7 62 76-140 85-155 (546)
69 PRK14472 F0F1 ATP synthase sub 48.6 2E+02 0.0044 25.7 11.0 70 105-192 36-105 (175)
70 PRK13428 F0F1 ATP synthase sub 48.3 2.1E+02 0.0046 29.8 11.0 17 332-348 201-217 (445)
71 PRK06231 F0F1 ATP synthase sub 48.2 2.4E+02 0.0052 26.5 11.0 21 168-188 111-131 (205)
72 PRK01005 V-type ATP synthase s 48.1 2E+02 0.0043 27.4 9.9 23 165-187 43-65 (207)
73 PRK10476 multidrug resistance 47.8 2.7E+02 0.0058 27.1 11.0 8 382-389 314-321 (346)
74 PF12240 Angiomotin_C: Angiomo 47.8 2.7E+02 0.0059 27.2 10.9 139 105-266 22-165 (205)
75 PRK03598 putative efflux pump 46.9 1.3E+02 0.0029 28.9 8.8 6 384-389 301-306 (331)
76 PLN02320 seryl-tRNA synthetase 46.9 2.2E+02 0.0048 30.8 11.1 99 101-207 65-165 (502)
77 PRK04778 septation ring format 46.0 4E+02 0.0086 28.4 17.1 36 239-274 399-434 (569)
78 PRK12704 phosphodiesterase; Pr 45.9 4.1E+02 0.0089 28.5 14.3 10 346-355 242-251 (520)
79 PRK08475 F0F1 ATP synthase sub 45.9 2.3E+02 0.0049 25.6 11.2 25 165-189 82-106 (167)
80 PRK09173 F0F1 ATP synthase sub 45.8 2.1E+02 0.0045 25.1 11.0 72 112-190 27-98 (159)
81 PF04201 TPD52: Tumour protein 45.8 51 0.0011 31.0 5.6 26 242-267 41-66 (162)
82 COG1666 Uncharacterized protei 45.1 13 0.00029 34.9 1.7 23 117-139 125-150 (165)
83 COG2433 Uncharacterized conser 44.8 3.1E+02 0.0068 30.8 12.0 96 132-240 425-520 (652)
84 PF02841 GBP_C: Guanylate-bind 44.8 3E+02 0.0066 26.7 11.6 82 153-239 182-266 (297)
85 CHL00019 atpF ATP synthase CF0 44.0 2.5E+02 0.0054 25.4 11.0 30 165-194 84-113 (184)
86 PRK08475 F0F1 ATP synthase sub 43.7 2.5E+02 0.0054 25.4 11.0 53 148-200 54-106 (167)
87 PF09177 Syntaxin-6_N: Syntaxi 43.5 89 0.0019 25.6 6.2 59 103-166 35-93 (97)
88 KOG4246 Predicted DNA-binding 43.3 7.4 0.00016 44.5 -0.2 33 300-345 536-568 (1194)
89 PF13779 DUF4175: Domain of un 42.8 3.1E+02 0.0066 31.4 11.9 146 108-267 428-611 (820)
90 PRK01919 tatB sec-independent 42.6 92 0.002 29.5 6.7 107 188-330 36-153 (169)
91 PF14817 HAUS5: HAUS augmin-li 42.3 4.9E+02 0.011 29.0 13.0 170 20-241 278-450 (632)
92 TIGR00606 rad50 rad50. This fa 41.8 6.5E+02 0.014 29.6 24.6 100 128-227 873-982 (1311)
93 cd05852 Ig5_Contactin-1 Fifth 41.4 34 0.00074 26.1 3.2 22 290-314 1-22 (73)
94 CHL00019 atpF ATP synthase CF0 41.2 2.7E+02 0.0059 25.1 11.2 26 172-197 80-105 (184)
95 TIGR03321 alt_F1F0_F0_B altern 41.1 3.2E+02 0.0069 25.9 11.2 25 166-190 66-90 (246)
96 PF08232 Striatin: Striatin fa 39.8 89 0.0019 27.7 6.0 19 227-254 52-70 (134)
97 PF14257 DUF4349: Domain of un 39.7 3E+02 0.0065 26.0 9.8 89 102-201 97-191 (262)
98 PF04461 DUF520: Protein of un 39.5 15 0.00033 34.2 1.3 18 122-139 129-146 (160)
99 PRK14472 F0F1 ATP synthase sub 39.2 2.9E+02 0.0062 24.8 13.5 51 148-198 50-100 (175)
100 PF05597 Phasin: Poly(hydroxya 39.1 2.9E+02 0.0063 24.8 10.4 41 148-189 46-86 (132)
101 PRK10807 paraquat-inducible pr 38.8 1.6E+02 0.0034 31.7 8.6 109 48-156 408-534 (547)
102 TIGR01010 BexC_CtrB_KpsE polys 38.7 3.3E+02 0.0072 26.7 10.2 23 64-86 65-87 (362)
103 COG2433 Uncharacterized conser 38.6 1.7E+02 0.0037 32.8 8.9 32 241-272 478-509 (652)
104 PRK07353 F0F1 ATP synthase sub 37.7 2.6E+02 0.0055 23.8 11.2 31 164-194 64-94 (140)
105 PRK05431 seryl-tRNA synthetase 37.4 4.6E+02 0.0099 27.2 11.4 97 103-207 2-101 (425)
106 PF09731 Mitofilin: Mitochondr 37.2 5.2E+02 0.011 27.2 18.1 76 174-273 366-442 (582)
107 PF02403 Seryl_tRNA_N: Seryl-t 37.1 2.3E+02 0.0051 23.2 11.2 97 103-203 2-98 (108)
108 PF05701 WEMBL: Weak chloropla 36.5 5.5E+02 0.012 27.3 12.1 118 109-228 304-434 (522)
109 COG2811 NtpF Archaeal/vacuolar 36.2 2.2E+02 0.0047 25.3 7.7 40 166-205 23-63 (108)
110 KOG0993 Rab5 GTPase effector R 35.7 3.2E+02 0.007 29.8 10.2 112 145-257 11-175 (542)
111 PF15619 Lebercilin: Ciliary p 35.6 3.8E+02 0.0083 25.2 11.8 92 109-207 98-192 (194)
112 PLN02678 seryl-tRNA synthetase 35.6 5.4E+02 0.012 27.3 11.7 90 114-207 17-106 (448)
113 cd00099 IgV Immunoglobulin var 34.7 71 0.0015 24.6 4.1 52 289-343 5-56 (105)
114 PRK02224 chromosome segregatio 34.4 6.5E+02 0.014 27.6 20.5 36 236-271 411-446 (880)
115 PRK14475 F0F1 ATP synthase sub 34.3 3.4E+02 0.0074 24.2 11.2 31 164-194 69-99 (167)
116 PF08317 Spc7: Spc7 kinetochor 33.7 4.8E+02 0.01 25.8 13.4 17 59-75 120-136 (325)
117 PRK09039 hypothetical protein; 33.7 5.2E+02 0.011 26.1 15.7 44 183-227 141-184 (343)
118 PRK13453 F0F1 ATP synthase sub 32.8 3.7E+02 0.008 24.2 13.5 52 147-198 49-100 (173)
119 COG1196 Smc Chromosome segrega 32.7 8.5E+02 0.018 28.3 18.1 34 239-272 462-495 (1163)
120 PF05103 DivIVA: DivIVA protei 32.5 37 0.00081 28.2 2.4 73 125-197 17-100 (131)
121 PRK14471 F0F1 ATP synthase sub 32.5 3.5E+02 0.0076 23.8 12.8 10 172-181 75-84 (164)
122 PTZ00464 SNF-7-like protein; P 32.3 4.6E+02 0.01 25.1 12.9 99 128-227 13-136 (211)
123 PF07106 TBPIP: Tat binding pr 32.3 62 0.0013 28.7 3.8 72 192-271 32-106 (169)
124 PF00430 ATP-synt_B: ATP synth 32.3 2.9E+02 0.0062 22.7 8.9 24 167-190 61-84 (132)
125 TIGR02926 AhaH ATP synthase ar 31.9 2.7E+02 0.0059 22.4 7.9 26 166-191 15-40 (85)
126 PF07888 CALCOCO1: Calcium bin 31.8 7.4E+02 0.016 27.4 14.1 52 141-193 169-220 (546)
127 PHA02562 46 endonuclease subun 31.7 5.8E+02 0.013 26.1 12.3 105 127-233 307-411 (562)
128 PF07888 CALCOCO1: Calcium bin 31.6 7.5E+02 0.016 27.4 16.7 27 242-268 288-314 (546)
129 PF07851 TMPIT: TMPIT-like pro 31.3 3.2E+02 0.0069 28.2 9.0 74 151-228 8-81 (330)
130 PRK06568 F0F1 ATP synthase sub 31.2 4.2E+02 0.0091 24.3 13.5 33 165-197 64-96 (154)
131 PRK13454 F0F1 ATP synthase sub 30.9 4.2E+02 0.0091 24.2 10.6 32 164-195 90-121 (181)
132 cd03404 Band_7_HflK Band_7_Hfl 30.9 4.5E+02 0.0097 24.6 11.1 104 99-209 134-250 (266)
133 KOG2836 Protein tyrosine phosp 30.8 85 0.0018 29.6 4.6 54 346-403 10-69 (173)
134 cd05880 Ig_EVA1 Immunoglobulin 30.6 51 0.0011 27.3 2.8 37 289-325 12-49 (115)
135 TIGR02231 conserved hypothetic 30.5 6.5E+02 0.014 26.3 13.4 26 245-270 146-171 (525)
136 PF11740 KfrA_N: Plasmid repli 30.4 3E+02 0.0065 22.6 7.3 23 62-84 10-32 (120)
137 KOG0996 Structural maintenance 30.4 1.1E+03 0.024 28.9 14.7 25 83-108 722-748 (1293)
138 PRK13729 conjugal transfer pil 30.3 78 0.0017 34.1 4.8 13 241-253 108-120 (475)
139 PRK06328 type III secretion sy 30.3 4.9E+02 0.011 24.8 9.9 37 340-378 161-198 (223)
140 PRK12704 phosphodiesterase; Pr 30.0 7.2E+02 0.016 26.7 15.8 29 167-195 45-73 (520)
141 TIGR01005 eps_transp_fam exopo 30.0 7.5E+02 0.016 26.9 14.5 145 131-275 189-355 (754)
142 PLN03144 Carbon catabolite rep 30.0 52 0.0011 36.0 3.5 41 330-371 180-228 (606)
143 PF07200 Mod_r: Modifier of ru 29.7 3.7E+02 0.008 23.2 13.3 101 128-230 33-139 (150)
144 PF02841 GBP_C: Guanylate-bind 29.6 5.3E+02 0.012 25.0 13.4 20 141-160 195-214 (297)
145 cd05899 IgV_TCR_beta Immunoglo 28.8 1.4E+02 0.003 23.9 4.9 36 288-327 11-46 (110)
146 PF03179 V-ATPase_G: Vacuolar 28.8 3.3E+02 0.0072 22.4 7.7 33 164-196 18-50 (105)
147 TIGR01933 hflK HflK protein. H 28.8 4.9E+02 0.011 24.3 11.5 94 104-204 112-218 (261)
148 TIGR03017 EpsF chain length de 28.7 6E+02 0.013 25.3 11.9 114 157-272 144-296 (444)
149 KOG4557 Origin recognition com 28.5 58 0.0012 32.5 3.2 46 63-130 85-130 (262)
150 cd00336 Ribosomal_L22 Ribosoma 28.4 1.7E+02 0.0036 24.3 5.5 27 109-142 12-38 (105)
151 PRK05412 putative nucleotide-b 28.3 36 0.00078 31.9 1.7 18 122-139 129-146 (161)
152 PRK11637 AmiB activator; Provi 28.2 6.5E+02 0.014 25.6 19.6 18 329-349 339-356 (428)
153 KOG1772 Vacuolar H+-ATPase V1 28.2 3.9E+02 0.0085 24.0 7.9 39 144-182 10-49 (108)
154 COG1566 EmrA Multidrug resista 27.9 6.9E+02 0.015 25.8 11.6 64 136-199 105-171 (352)
155 COG1012 PutA NAD-dependent ald 27.9 2.7E+02 0.0059 29.1 8.1 76 84-179 41-117 (472)
156 PF09969 DUF2203: Uncharacteri 27.8 2.3E+02 0.0049 24.9 6.5 59 188-257 5-63 (120)
157 PF12999 PRKCSH-like: Glucosid 27.2 2.6E+02 0.0056 26.6 7.1 54 174-228 120-173 (176)
158 TIGR03319 YmdA_YtgF conserved 27.1 8.1E+02 0.017 26.3 14.2 24 360-388 270-293 (514)
159 TIGR01144 ATP_synt_b ATP synth 27.1 4E+02 0.0087 22.8 11.6 31 165-195 55-85 (147)
160 PF08826 DMPK_coil: DMPK coile 27.0 3E+02 0.0065 22.1 6.4 46 182-228 14-59 (61)
161 PRK10404 hypothetical protein; 27.0 3.4E+02 0.0074 23.3 7.2 45 161-205 20-64 (101)
162 TIGR03007 pepcterm_ChnLen poly 26.9 6.9E+02 0.015 25.5 11.3 31 241-271 352-382 (498)
163 PRK03918 chromosome segregatio 26.8 8.6E+02 0.019 26.5 19.4 33 116-148 505-537 (880)
164 TIGR00831 a_cpa1 Na+/H+ antipo 26.7 2.4E+02 0.0053 29.7 7.6 64 159-234 400-463 (525)
165 PRK13461 F0F1 ATP synthase sub 26.4 4.4E+02 0.0096 23.1 11.2 24 166-189 66-89 (159)
166 PF01991 vATP-synt_E: ATP synt 26.4 4.4E+02 0.0096 23.0 8.7 24 164-187 12-35 (198)
167 PRK02292 V-type ATP synthase s 26.3 4.8E+02 0.01 23.4 9.9 22 166-187 33-54 (188)
168 PF11657 Activator-TraM: Trans 26.3 5.2E+02 0.011 23.8 11.2 62 170-233 63-124 (144)
169 PF05130 FlgN: FlgN protein; 26.1 3.5E+02 0.0076 21.8 8.0 48 107-154 15-62 (143)
170 CHL00034 rpl22 ribosomal prote 26.1 1.8E+02 0.0039 25.4 5.5 46 109-185 21-66 (117)
171 KOG0963 Transcription factor/C 25.9 9.9E+02 0.021 27.1 12.1 85 180-266 304-412 (629)
172 cd04276 ZnMc_MMP_like_2 Zinc-d 25.7 97 0.0021 29.1 4.1 48 293-351 48-97 (197)
173 PF15233 SYCE1: Synaptonemal c 25.6 3.9E+02 0.0084 24.8 7.6 54 173-238 21-74 (134)
174 PF09012 FeoC: FeoC like trans 25.5 61 0.0013 24.9 2.3 24 63-86 6-29 (69)
175 TIGR01730 RND_mfp RND family e 25.1 5.5E+02 0.012 23.7 9.6 21 148-168 76-96 (322)
176 cd05714 Ig_CSPGs_LP Immunoglob 24.9 1.4E+02 0.0031 23.6 4.4 17 304-320 19-35 (106)
177 PRK09578 periplasmic multidrug 24.8 5.6E+02 0.012 25.3 9.3 22 182-203 149-170 (385)
178 TIGR03319 YmdA_YtgF conserved 24.7 8.9E+02 0.019 26.0 16.1 27 167-193 39-65 (514)
179 TIGR03185 DNA_S_dndD DNA sulfu 24.5 9.1E+02 0.02 26.0 13.8 114 109-224 400-514 (650)
180 cd05865 Ig1_NCAM-1 First immun 24.4 72 0.0016 25.8 2.6 26 287-314 12-37 (96)
181 PRK09216 rplM 50S ribosomal pr 24.3 94 0.002 28.4 3.6 43 311-357 14-64 (144)
182 smart00340 HALZ homeobox assoc 24.3 58 0.0013 25.1 1.9 25 216-242 20-44 (44)
183 PRK15030 multidrug efflux syst 24.3 5.9E+02 0.013 25.5 9.4 53 150-202 117-171 (397)
184 PF07926 TPR_MLP1_2: TPR/MLP1/ 24.2 4.7E+02 0.01 22.6 10.1 57 149-210 48-104 (132)
185 PRK15136 multidrug efflux syst 24.2 5.7E+02 0.012 25.7 9.4 73 141-228 97-171 (390)
186 COG1196 Smc Chromosome segrega 24.1 1.2E+03 0.026 27.2 19.3 21 238-258 885-905 (1163)
187 PF00572 Ribosomal_L13: Riboso 24.0 47 0.001 29.4 1.6 31 323-357 20-50 (128)
188 PF01322 Cytochrom_C_2: Cytoch 23.9 4.3E+02 0.0093 22.0 10.7 94 102-201 4-113 (122)
189 COG0172 SerS Seryl-tRNA synthe 23.8 6.6E+02 0.014 26.9 10.0 101 109-211 4-107 (429)
190 PF11629 Mst1_SARAH: C termina 23.7 94 0.002 24.4 3.0 22 240-261 22-43 (49)
191 cd05850 Ig1_Contactin-2 First 23.5 3.2E+02 0.007 21.5 6.1 22 290-314 19-40 (94)
192 PF10174 Cast: RIM-binding pro 23.5 1.2E+03 0.025 26.9 16.5 45 184-228 434-478 (775)
193 PRK10780 periplasmic chaperone 23.5 5.3E+02 0.012 23.0 10.1 46 140-188 47-92 (165)
194 TIGR00998 8a0101 efflux pump m 23.4 6.4E+02 0.014 23.9 10.6 80 141-228 78-159 (334)
195 PF02736 Myosin_N: Myosin N-te 23.1 75 0.0016 22.9 2.2 30 330-361 2-32 (42)
196 PRK01558 V-type ATP synthase s 23.1 5.3E+02 0.011 23.9 8.3 62 160-224 22-83 (198)
197 TIGR03321 alt_F1F0_F0_B altern 22.9 6.6E+02 0.014 23.8 11.0 19 105-123 23-41 (246)
198 COG1390 NtpE Archaeal/vacuolar 22.8 6.5E+02 0.014 23.7 9.3 72 158-229 3-76 (194)
199 cd05724 Ig2_Robo Second immuno 22.7 3.1E+02 0.0066 20.3 5.6 23 289-314 10-33 (86)
200 KOG0994 Extracellular matrix g 22.7 1.6E+03 0.034 28.1 14.3 40 186-225 1591-1632(1758)
201 COG4575 ElaB Uncharacterized c 22.6 1.4E+02 0.0031 26.4 4.2 62 74-139 17-80 (104)
202 cd05856 Ig2_FGFRL1-like Second 22.4 2.4E+02 0.0053 20.4 4.9 24 288-314 7-30 (82)
203 PF05878 Phyto_Pns9_10: Phytor 22.3 62 0.0013 33.2 2.3 48 215-263 173-220 (312)
204 PF10168 Nup88: Nuclear pore c 22.1 1.2E+03 0.025 26.4 14.0 27 152-178 574-600 (717)
205 PRK00409 recombination and DNA 21.9 1.2E+03 0.025 26.4 14.5 14 124-137 497-510 (782)
206 PRK09098 type III secretion sy 21.8 7.2E+02 0.016 23.9 10.6 30 166-195 45-74 (233)
207 PRK00565 rplV 50S ribosomal pr 21.8 2.2E+02 0.0049 24.4 5.2 46 109-185 14-59 (112)
208 PF10174 Cast: RIM-binding pro 21.8 1.2E+03 0.027 26.6 16.5 155 54-208 404-584 (775)
209 PRK04424 fatty acid biosynthes 21.8 2E+02 0.0043 26.3 5.2 49 60-116 10-58 (185)
210 PF08285 DPM3: Dolichol-phosph 21.7 63 0.0014 27.4 1.8 17 213-229 66-82 (91)
211 cd05857 Ig2_FGFR Second immuno 21.7 1E+02 0.0022 23.1 2.8 23 289-314 8-30 (85)
212 PF10455 BAR_2: Bin/amphiphysi 21.6 8.4E+02 0.018 24.7 9.9 95 157-267 145-252 (289)
213 KOG0999 Microtubule-associated 21.3 1.3E+03 0.027 26.5 13.0 79 183-265 54-135 (772)
214 PF12392 DUF3656: Collagenase 21.3 2.3E+02 0.0051 23.8 5.2 50 339-388 33-87 (122)
215 PRK14474 F0F1 ATP synthase sub 21.1 7.6E+02 0.016 23.9 11.6 88 139-226 39-127 (250)
216 cd04980 IgV_L_kappa Immunoglob 21.0 1.3E+02 0.0029 23.8 3.5 37 289-327 14-50 (106)
217 KOG4552 Vitamin-D-receptor int 21.0 3.7E+02 0.0081 27.0 7.1 63 164-229 61-123 (272)
218 PF10549 ORF11CD3: ORF11CD3 do 20.9 3E+02 0.0064 21.9 5.3 48 177-225 4-51 (57)
219 PRK04863 mukB cell division pr 20.7 1.6E+03 0.035 27.6 17.9 84 180-271 398-483 (1486)
220 KOG3130 Uncharacterized conser 20.6 2.2E+02 0.0048 30.8 5.8 173 163-353 73-268 (514)
221 PF09832 DUF2059: Uncharacteri 20.5 3.7E+02 0.008 20.1 6.2 42 137-189 9-50 (64)
222 KOG0996 Structural maintenance 20.5 1.6E+03 0.035 27.5 15.8 141 107-268 885-1043(1293)
223 cd05867 Ig4_L1-CAM_like Fourth 20.5 3.4E+02 0.0073 20.2 5.4 22 290-314 1-22 (76)
224 KOG4403 Cell surface glycoprot 20.5 5.2E+02 0.011 28.5 8.5 83 167-255 238-320 (575)
225 PF14174 YycC: YycC-like prote 20.5 1.2E+02 0.0025 24.3 2.9 30 86-115 9-40 (53)
226 PF02477 Nairo_nucleo: Nucleoc 20.3 87 0.0019 33.2 2.9 44 99-143 238-283 (442)
227 TIGR00634 recN DNA repair prot 20.0 1.1E+03 0.023 25.1 12.6 41 213-254 299-339 (563)
No 1
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=91.12 E-value=3.1 Score=45.71 Aligned_cols=81 Identities=27% Similarity=0.382 Sum_probs=62.2
Q ss_pred CCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015554 125 GRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASED----AKKLVDEERAFARAEIESARAAVQRVEE 200 (405)
Q Consensus 125 GrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeD----AkkiV~eERa~A~aEIE~ArAaV~Rve~ 200 (405)
|....++++.|.=.+..-.++-++..++.+.+.|++++-+-++..-+. -+++.++.+..|+..|+.||..+..+-.
T Consensus 512 ~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~ 591 (782)
T PRK00409 512 GEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIK 591 (782)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456668888888888888888888888888888888877777665443 5567788888888888888887777777
Q ss_pred HHHHH
Q 015554 201 SLQEH 205 (405)
Q Consensus 201 al~Eq 205 (405)
-|++.
T Consensus 592 ~lk~~ 596 (782)
T PRK00409 592 ELRQL 596 (782)
T ss_pred HHHHh
Confidence 77654
No 2
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.11 E-value=37 Score=33.46 Aligned_cols=102 Identities=23% Similarity=0.391 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015554 130 DVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMS 209 (405)
Q Consensus 130 dveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s 209 (405)
.+.+.+..+.-+--++..+-.+|..+-...+.++.-+....-+-=.-..++=+...++|+.=|.-+..++.-+++-+...
T Consensus 167 ~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 167 KLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666665555555555444444443322222211112222233333344444444444444444433332
Q ss_pred hhcCcccHHHHHHHHHHHHhhhh
Q 015554 210 RASGKQDFEELMKEVQEARRIKM 232 (405)
Q Consensus 210 ~~s~kqd~e~L~~EVqEARRIKm 232 (405)
...+....++..+|++|.|+..
T Consensus 247 -~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 247 -EELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 2233466777778888887765
No 3
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.68 E-value=31 Score=34.49 Aligned_cols=140 Identities=21% Similarity=0.248 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhHH
Q 015554 107 VLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKAS-EDAKKLVDEERAFAR 185 (405)
Q Consensus 107 vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqAS-eDAkkiV~eERa~A~ 185 (405)
-|++.|+..|+.=.+.+-. .+.-+.+-+..+.-+--+|..+-.+|..|=..++.+..-+..-. ++.+++- ++=+...
T Consensus 140 kllegLk~~L~~~~~~l~~-D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk-~~l~~~~ 217 (312)
T smart00787 140 KLLEGLKEGLDENLEGLKE-DYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAK-EKLKKLL 217 (312)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHH-HHHHHHH
Confidence 3455555555543333321 12225566666666666777777777666666666666554422 2333443 5556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHH
Q 015554 186 AEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQL 253 (405)
Q Consensus 186 aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql 253 (405)
.+|+..+.-+.-+++-|++-+..-... ++...++..+|++|+++.-=+.. ++ -+|+..|+.++
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~-~~~k~e~~~~I~~ae~~~~~~r~---~t-~~Ei~~Lk~~~ 280 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIEDL-TNKKSELNTEIAEAEKKLEQCRG---FT-FKEIEKLKEQL 280 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC---CC-HHHHHHHHHHH
Confidence 777777777777777776666554433 44788899999999997533222 22 25666666554
No 4
>PRK04863 mukB cell division protein MukB; Provisional
Probab=84.36 E-value=1e+02 Score=37.10 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccC--CccccccHHHHHHHHHHHHHHhHHH
Q 015554 183 FARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQ--PSKVMDMEHELRALRIQLAEKSKCS 260 (405)
Q Consensus 183 ~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~--PSKvMDME~El~~LR~ql~eKs~~~ 260 (405)
...++++.+...+..++..+.+........ .+++..+...++...++++|-+ |--.-+++..+.....++.++....
T Consensus 380 eleeEleelEeeLeeLqeqLaelqqel~el-Q~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL 458 (1486)
T PRK04863 380 ENEARAEAAEEEVDELKSQLADYQQALDVQ-QTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEEL 458 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555544444332222211 2367788888999999999987 3344567888888888888888888
Q ss_pred HHHHHHHHHhhhhh
Q 015554 261 LLLRKELAMSKRIE 274 (405)
Q Consensus 261 v~L~KEL~~~kr~~ 274 (405)
..+..+|.+++..-
T Consensus 459 ~elE~kL~~lea~l 472 (1486)
T PRK04863 459 LSLEQKLSVAQAAH 472 (1486)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887655433
No 5
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=83.61 E-value=25 Score=30.78 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=15.3
Q ss_pred chHHHHHHHHHHHHHhhcccC
Q 015554 104 EKHVLLKKLRDALESLRGRVA 124 (405)
Q Consensus 104 er~vLLKkLR~~LesLrGRva 124 (405)
=+++|.|.++.+|+.=+.++.
T Consensus 24 l~kfl~kPi~~~l~~R~~~I~ 44 (141)
T PRK08476 24 LNSWLYKPLLKFMDNRNASIK 44 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888887665554
No 6
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=83.52 E-value=17 Score=40.28 Aligned_cols=80 Identities=23% Similarity=0.271 Sum_probs=48.3
Q ss_pred CCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015554 125 GRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKAS----EDAKKLVDEERAFARAEIESARAAVQRVEE 200 (405)
Q Consensus 125 GrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqAS----eDAkkiV~eERa~A~aEIE~ArAaV~Rve~ 200 (405)
|..+.++++-|.=.+..-.++-+...++.+.+.|++++-.-|++.. +.-+++.++.|..|+..|+.||.-+..+-.
T Consensus 507 ~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~ 586 (771)
T TIGR01069 507 GEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIR 586 (771)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666665555444433 334556666677777777777766655555
Q ss_pred HHHH
Q 015554 201 SLQE 204 (405)
Q Consensus 201 al~E 204 (405)
-|++
T Consensus 587 ~lk~ 590 (771)
T TIGR01069 587 ELKE 590 (771)
T ss_pred HHHh
Confidence 5543
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=83.23 E-value=75 Score=34.68 Aligned_cols=6 Identities=17% Similarity=0.479 Sum_probs=2.8
Q ss_pred cCCeEE
Q 015554 350 YNGQQI 355 (405)
Q Consensus 350 ~~g~k~ 355 (405)
+||+.+
T Consensus 644 ldG~~~ 649 (1164)
T TIGR02169 644 LEGELF 649 (1164)
T ss_pred eCceeE
Confidence 445444
No 8
>PRK09039 hypothetical protein; Validated
Probab=82.37 E-value=58 Score=32.73 Aligned_cols=119 Identities=21% Similarity=0.268 Sum_probs=57.9
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHH---hhHHHHHHHHH----------HHHhHHHHHH-------HHHHHHHHHHH
Q 015554 141 LAVQLTQREGELIQEKAEVKKLADFLKK---ASEDAKKLVDE----------ERAFARAEIE-------SARAAVQRVEE 200 (405)
Q Consensus 141 LavqltqrE~ELiQeK~EVkKlA~~lKq---ASeDAkkiV~e----------ERa~A~aEIE-------~ArAaV~Rve~ 200 (405)
|..++|.++.||-+-..++.-|+..|.. .+.|....+.+ +|+....-.. .+.+.....++
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~ 123 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQ 123 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHH
Confidence 4556666777776666666666644432 23333222221 2221111111 11222333344
Q ss_pred HHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015554 201 SLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELA 268 (405)
Q Consensus 201 al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~eKs~~~v~L~KEL~ 268 (405)
.|.+....+..... ++..|+.+|..-|+= .-.+|.+|.++..+.++.....-.|..+|.
T Consensus 124 ~L~~~k~~~se~~~-~V~~L~~qI~aLr~Q--------la~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 124 ELDSEKQVSARALA-QVELLNQQIAALRRQ--------LAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333333 455555555554442 445566666666666666666667777775
No 9
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=82.00 E-value=28 Score=38.40 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=25.2
Q ss_pred ccccccHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 015554 237 SKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKR 272 (405)
Q Consensus 237 SKvMDME~El~~LR~ql~eKs~~~v~L~KEL~~~kr 272 (405)
.+.=|||.||+.||..|..|-..+..|.+|+.-...
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334477888888888888888777777777753333
No 10
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=81.42 E-value=33 Score=30.09 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 015554 105 KHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAE 158 (405)
Q Consensus 105 r~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~E 158 (405)
..++.|.+.+.|+.=+.++.| ++++|-..-+-..-.+.+-+..|.+-+.|
T Consensus 23 ~~f~~kpi~~~l~~R~~~I~~----~l~~A~~~~~eA~~~~~e~~~~l~~a~~e 72 (159)
T PRK13461 23 KHFFFDKIKAVIDSRQSEIDN----KIEKADEDQKKARELKLKNERELKNAKEE 72 (159)
T ss_pred HHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888887777654 44444444333344444444444444433
No 11
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=80.51 E-value=47 Score=31.17 Aligned_cols=77 Identities=27% Similarity=0.387 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 015554 104 EKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAF 183 (405)
Q Consensus 104 er~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~ 183 (405)
=..++++.++.+|+.=+.++.+ ++++|-.+-+-..-.+.+-|.+|.+-+.|...+ +..|-++|++..+++|..
T Consensus 70 L~k~~~~pI~~vLe~R~~~I~~----~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~I---i~~Ar~ea~~~~e~~~~~ 142 (204)
T PRK09174 70 MSRVILPRIGGIIETRRDRIAQ----DLDQAARLKQEADAAVAAYEQELAQARAKAHSI---AQAAREAAKAKAEAERAA 142 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3567888899999988777754 555555554444444444555554444443333 223333444444444433
Q ss_pred HHHH
Q 015554 184 ARAE 187 (405)
Q Consensus 184 A~aE 187 (405)
|++|
T Consensus 143 a~~e 146 (204)
T PRK09174 143 IEAS 146 (204)
T ss_pred HHHH
Confidence 3333
No 12
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=79.43 E-value=43 Score=29.38 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=10.9
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHH
Q 015554 166 LKKASEDAKKLVDEERAFARAEI 188 (405)
Q Consensus 166 lKqASeDAkkiV~eERa~A~aEI 188 (405)
|.+|..+|.+++++.++.|+.|.
T Consensus 68 l~~Ar~eA~~~~~~a~~~A~~ea 90 (141)
T PRK08476 68 LKNAREEANKIRQKAIAKAKEEA 90 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555554444444443
No 13
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=76.98 E-value=56 Score=32.40 Aligned_cols=99 Identities=28% Similarity=0.438 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHhHH---HHH----HHHHHHHHHHHH
Q 015554 131 VEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDA---KKLVDEERAFAR---AEI----ESARAAVQRVEE 200 (405)
Q Consensus 131 veeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDA---kkiV~eERa~A~---aEI----E~ArAaV~Rve~ 200 (405)
+.++=.-|+.|-.+|+..+-+|.+.+.|+.++-.-+..-+++| ++++.++...+. .|| +.|.+.+..++-
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a~P 89 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELAEAEP 89 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788999999999999999998888888877765433332 334444332221 122 345666677788
Q ss_pred HHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccc
Q 015554 201 SLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKV 239 (405)
Q Consensus 201 al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKv 239 (405)
+|++-....+.-.+.|+.+| |-++.|...
T Consensus 90 ~L~~A~~al~~l~k~di~Ei----------ks~~~PP~~ 118 (344)
T PF12777_consen 90 ALEEAQEALKSLDKSDISEI----------KSYANPPEA 118 (344)
T ss_dssp HHHHHHHHHHCS-HHHHHHH----------HHSSS--HH
T ss_pred HHHHHHHHHHhCCHHHHHHH----------HhhCCCcHH
Confidence 88888888888888888775 456666654
No 14
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=76.48 E-value=75 Score=30.59 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 015554 245 ELRALRIQLAEKSKCSLLLRKELA 268 (405)
Q Consensus 245 El~~LR~ql~eKs~~~v~L~KEL~ 268 (405)
++..++.++.+-....-.++..|.
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444443
No 15
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=76.20 E-value=1.1e+02 Score=35.34 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHH
Q 015554 131 VEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESAR 192 (405)
Q Consensus 131 veeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~Ar 192 (405)
++++-..+.-...++.|.+..+.+-+.+-..+-.-++++-+.++.-++++-..+..++....
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 637 IEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLK 698 (1201)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444444444444444444444333333333333
No 16
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=75.35 E-value=50 Score=35.78 Aligned_cols=244 Identities=26% Similarity=0.339 Sum_probs=80.4
Q ss_pred HhhhhchHHHH-----HHHHHHHHHhhcccCCCChh--------hHHHHHHHHHH----HHHHhhhhhhhhHHHHHHHHH
Q 015554 99 EAASLEKHVLL-----KKLRDALESLRGRVAGRNKD--------DVEEAIAMVEA----LAVQLTQREGELIQEKAEVKK 161 (405)
Q Consensus 99 eva~Ler~vLL-----KkLR~~LesLrGRvaGrnKd--------dveeaismVea----LavqltqrE~ELiQeK~EVkK 161 (405)
.+.-|||..+| .-||..|++.-.=.+.-+.+ .+++-+.+++. +..++.+-+.++-..|.-...
T Consensus 400 ~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~ 479 (722)
T PF05557_consen 400 LIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNET 479 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 45667887765 45777777765544444333 13333444443 222444445555444432222
Q ss_pred HHH---HHHHhhHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------
Q 015554 162 LAD---FLKKASEDAKK---LVDEERAFARAEIESARAAVQRVEESLQEHEQM--------------------------- 208 (405)
Q Consensus 162 lA~---~lKqASeDAkk---iV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~--------------------------- 208 (405)
+.. .+++...++.. ...++-...+.+|+..+....++++-+..-+.-
T Consensus 480 ~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~ 559 (722)
T PF05557_consen 480 LEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSK 559 (722)
T ss_dssp --------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHH
T ss_pred hhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHH
Confidence 222 23333323322 112222224445555555554444444332210
Q ss_pred hhhcCcccHHHHHHHHHHHH-hhhhcc----CCccc-----cc-cHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhccc
Q 015554 209 SRASGKQDFEELMKEVQEAR-RIKMLH----QPSKV-----MD-MEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKL 277 (405)
Q Consensus 209 s~~s~kqd~e~L~~EVqEAR-RIKmLH----~PSKv-----MD-ME~El~~LR~ql~eKs~~~v~L~KEL~~~kr~~en~ 277 (405)
.....++.++.|++|.++-| ||+-|. .|..+ |+ ++.|+..|+.++..+-...-+| ||+=..|..+= .
T Consensus 560 ~~~~k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RL-kevf~~ks~eF-r 637 (722)
T PF05557_consen 560 AEQIKKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRL-KEVFKAKSQEF-R 637 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-H
Confidence 01223568999999988876 454443 33332 33 5789999999999887666665 44433332221 1
Q ss_pred CCceeeccccccCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccccccccccccCCCCcccceeeeEeecCCeEEEE
Q 015554 278 SDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITL 357 (405)
Q Consensus 278 ~~~yeLeG~e~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsGAtk~~YAPEP~DVGr~LqadI~~~g~k~~~ 357 (405)
-..|.| ||--+-+.|.+ =|||. |+|||.|-| +|-.+...++.- +
T Consensus 638 ~av~~l-----lGyki~~~~~~------------~~rl~--------------S~ya~~~~~---~l~f~~~~~~~~--~ 681 (722)
T PF05557_consen 638 EAVYSL-----LGYKIDFMPNG------------RVRLT--------------SMYAESPDD---YLIFDLESGTGS--M 681 (722)
T ss_dssp HHHHHH-----HSEEEEEETTT------------EEEEE--------------ETT-SSTT-----EEEEEE-------E
T ss_pred HHHHHH-----hcceeeecCCC------------eEEEE--------------ecccCCCCC---eEEEeecCCCcc--c
Confidence 133443 44444443331 26665 589999987 676676643321 2
Q ss_pred eecCCCCCCCCchhHHHHHhhcCC
Q 015554 358 TTTGAVDPAPGLGSYVEALVRKHD 381 (405)
Q Consensus 358 ~T~GPidpaaGL~~yVEaL~rk~~ 381 (405)
.-.|- +-++-+.+-|+.-|+..+
T Consensus 682 ~~~~~-~~~~~~~~~i~~~v~~~~ 704 (722)
T PF05557_consen 682 KLLES-EFSPELEDLIEFWVEERN 704 (722)
T ss_dssp EEE---CCHHCTHHHHHHHTTTS-
T ss_pred eeCCC-chHHHHHHHHHHHHHcCC
Confidence 22221 223456666766665443
No 17
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=74.70 E-value=60 Score=28.66 Aligned_cols=87 Identities=33% Similarity=0.407 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HH
Q 015554 134 AIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQE-------HE 206 (405)
Q Consensus 134 aismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~E-------qe 206 (405)
++++||-|.-++-++|||+.+=|.++..|..-=+.|++.-=++ ..+.|..++.+.++...-.+ +.
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l--------~~~~e~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKL--------MEENEELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999887666666554443 33444444444444333222 22
Q ss_pred HhhhhcCc--ccHHHHHHHHHHHH
Q 015554 207 QMSRASGK--QDFEELMKEVQEAR 228 (405)
Q Consensus 207 ~~s~~s~k--qd~e~L~~EVqEAR 228 (405)
...+--|- +++|+|+-.|++-+
T Consensus 86 t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 86 TLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHH
Confidence 23333332 37788877776644
No 18
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=74.45 E-value=55 Score=28.04 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 015554 105 KHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEK 156 (405)
Q Consensus 105 r~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK 156 (405)
..+|.+.++.+|+.=+.++.+ ++++|=..-+-..-.+.+-+..|.+-+
T Consensus 13 ~~~~~~pi~~~l~~R~~~I~~----~l~~A~~~~~ea~~~~~e~~~~l~~A~ 60 (147)
T TIGR01144 13 MKYVWPPLAKAIETRQKKIAD----GLASAERAKKEAALAQKKAQVILKEAK 60 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788889998887777654 344444443333333333333333333
No 19
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=74.36 E-value=1.8e+02 Score=35.20 Aligned_cols=85 Identities=22% Similarity=0.186 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH-hhhhccCCcc-----cc-------ccHHHHHHH
Q 015554 183 FARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR-RIKMLHQPSK-----VM-------DMEHELRAL 249 (405)
Q Consensus 183 ~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEAR-RIKmLH~PSK-----vM-------DME~El~~L 249 (405)
.|..+..+|....++.++.++.-....+. .++=++.-++..+-|| |++||-+--+ +| |||-+...=
T Consensus 1644 ~a~~~a~sa~~~A~~a~q~~~~lq~~~~~-~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~ 1722 (1758)
T KOG0994|consen 1644 QAEKTAGSAKEQALSAEQGLEILQKYYEL-VDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRN 1722 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45556677777777777777633222222 2234455555555555 5666644221 12 344333333
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 015554 250 RIQLAEKSKCSLLLRKELA 268 (405)
Q Consensus 250 R~ql~eKs~~~v~L~KEL~ 268 (405)
-++|.-|+.+.--|-|+|.
T Consensus 1723 ~~~L~~~~aeL~~Le~r~~ 1741 (1758)
T KOG0994|consen 1723 EQALEDKAAELAGLEKRVE 1741 (1758)
T ss_pred hHHHHHHHHHhhhHHHHHH
Confidence 4566667777777777765
No 20
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=74.03 E-value=54 Score=27.82 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 015554 104 EKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAE 158 (405)
Q Consensus 104 er~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~E 158 (405)
=+++|.+.|.+.|+.=+.++. +++++|-..-+-..-.+.+-|..|-+-+.+
T Consensus 22 l~~~l~~pi~~~l~~R~~~I~----~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~e 72 (140)
T PRK07353 22 LNALFYKPVGKVVEEREDYIR----TNRAEAKERLAEAEKLEAQYEQQLASARKQ 72 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888887666664 345555555444444444444444443333
No 21
>PF14443 DBC1: DBC1
Probab=73.32 E-value=1.2 Score=39.84 Aligned_cols=15 Identities=53% Similarity=1.265 Sum_probs=12.6
Q ss_pred CCCCCCCcceeEEEec
Q 015554 301 NGPELSKCSIQWYRVP 316 (405)
Q Consensus 301 ~~~dlSkcsiQWyRv~ 316 (405)
..+|||+|+ ||||+.
T Consensus 54 tgiDLS~Ct-~W~rf~ 68 (126)
T PF14443_consen 54 TGIDLSNCT-QWYRFA 68 (126)
T ss_pred hccchhhcC-ccceee
Confidence 458999998 999975
No 22
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=73.15 E-value=1.4e+02 Score=32.32 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=3.1
Q ss_pred CcccCCCC
Q 015554 33 NYKIGANN 40 (405)
Q Consensus 33 ~Yk~g~n~ 40 (405)
.+.+++++
T Consensus 130 ~~~i~~~~ 137 (1179)
T TIGR02168 130 DTGLGKRS 137 (1179)
T ss_pred ccCCCccc
Confidence 33334433
No 23
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=73.09 E-value=43 Score=32.23 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=12.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Q 015554 180 ERAFARAEIESARAAVQRVEESLQE 204 (405)
Q Consensus 180 ERa~A~aEIE~ArAaV~Rve~al~E 204 (405)
+...+++++..+++.+..++..+..
T Consensus 211 ~l~~~~~~l~~~~~~l~~~~~~~~~ 235 (423)
T TIGR01843 211 ELGRLEAELEVLKRQIDELQLERQQ 235 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555554444443
No 24
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=71.80 E-value=80 Score=28.80 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhH
Q 015554 105 KHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFA 184 (405)
Q Consensus 105 r~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A 184 (405)
+.+++++++.+|+.=+.++. +++++|-..-+-..-.+.+-|..|.+-|.|-..+ +..|-.+|+++.++.+..|
T Consensus 49 ~k~l~~PI~~~l~~R~~~I~----~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~i---i~~A~~ea~~~~~~~~~~A 121 (181)
T PRK13454 49 TRVALPRIGAVLAERQGTIT----NDLAAAEELKQKAVEAEKAYNKALADARAEAQRI---VAETRAEIQAELDVAIAKA 121 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 56677888888888777665 4555555544444444444454444444443332 3334444444555444444
Q ss_pred HHHHH
Q 015554 185 RAEIE 189 (405)
Q Consensus 185 ~aEIE 189 (405)
++|++
T Consensus 122 ~~e~~ 126 (181)
T PRK13454 122 DAEIA 126 (181)
T ss_pred HHHHH
Confidence 44433
No 25
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=71.14 E-value=1.6e+02 Score=31.97 Aligned_cols=98 Identities=23% Similarity=0.272 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHH
Q 015554 109 LKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEI 188 (405)
Q Consensus 109 LKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEI 188 (405)
+|..+.......-.+. ||+++++.-.=|+++--.=-..-.++.|-|.|+.+|-+.+++. .+.|
T Consensus 173 ~k~~~~~w~~~~~~Lp--~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~---------------~~~i 235 (555)
T TIGR03545 173 LKAMQQKWKKRKKDLP--NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKAD---------------KQKI 235 (555)
T ss_pred HHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH---------------HHHH
Confidence 3444444444444555 5777777777777765532344456677777777776666442 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHH
Q 015554 189 ESARAAVQRVEESLQEHEQMSRASGKQDFEELMKE 223 (405)
Q Consensus 189 E~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~E 223 (405)
.+++..++.-.+.++.+-....+.-++|+..|++-
T Consensus 236 ~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~ 270 (555)
T TIGR03545 236 KSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENK 270 (555)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHH
Confidence 44444444444444444444455556677776654
No 26
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=67.77 E-value=1.2e+02 Score=31.56 Aligned_cols=15 Identities=7% Similarity=0.142 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHh
Q 015554 105 KHVLLKKLRDALESL 119 (405)
Q Consensus 105 r~vLLKkLR~~LesL 119 (405)
..++.|.++.+|+.=
T Consensus 19 ~kfl~~Pi~~~l~~R 33 (445)
T PRK13428 19 WRFVVPPVRRLMAAR 33 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666666653
No 27
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=67.48 E-value=1.5e+02 Score=30.38 Aligned_cols=128 Identities=30% Similarity=0.390 Sum_probs=89.4
Q ss_pred hhhHHHHHHH-HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015554 128 KDDVEEAIAM-VEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHE 206 (405)
Q Consensus 128 Kddveeaism-VeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe 206 (405)
-||+..+|-+ -|+|.--..|-=|+|--=|+|-+.|-+=|..= .+-|.--.+||||-|+ |+-.|+.+|+
T Consensus 40 n~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~E--------Kq~kerLEtEiES~rs---RLaaAi~d~d 108 (305)
T PF14915_consen 40 NDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKE--------KQNKERLETEIESYRS---RLAAAIQDHD 108 (305)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHh--------HHHHHHHHHHHHHHHH---HHHHHHhhHH
Confidence 3677888887 46788888888888888888988888776432 2234445689999886 7788888888
Q ss_pred HhhhhcCcccHHH-HHHHHHHHH---------------hhhhccCC-----ccccccHHHHHHHHHHHHHHhHHHHHHHH
Q 015554 207 QMSRASGKQDFEE-LMKEVQEAR---------------RIKMLHQP-----SKVMDMEHELRALRIQLAEKSKCSLLLRK 265 (405)
Q Consensus 207 ~~s~~s~kqd~e~-L~~EVqEAR---------------RIKmLH~P-----SKvMDME~El~~LR~ql~eKs~~~v~L~K 265 (405)
++- .| +.|++- +..+..|-= ...+|+|+ ||+=.+|.|++-.|+.|.||+...-.+++
T Consensus 109 qsq-~s-krdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~Qr 186 (305)
T PF14915_consen 109 QSQ-TS-KRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQR 186 (305)
T ss_pred HHH-hh-HHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 742 22 223331 111211111 13567665 77888999999999999999998888887
Q ss_pred HHH
Q 015554 266 ELA 268 (405)
Q Consensus 266 EL~ 268 (405)
+|.
T Consensus 187 dL~ 189 (305)
T PF14915_consen 187 DLS 189 (305)
T ss_pred HHH
Confidence 775
No 28
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=67.24 E-value=78 Score=28.35 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 015554 105 KHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEK 156 (405)
Q Consensus 105 r~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK 156 (405)
...+.|.+.++|+.=+.++.+ ++++|-..-+-..-.+.+-|..|.+-+
T Consensus 34 ~~~~~kpi~~~l~~R~~~I~~----~l~~Ae~~~~eA~~~~~e~e~~l~~a~ 81 (173)
T PRK13460 34 KKFAWDVILKALDERASGVQN----DINKASELRLEAEALLKDYEARLNSAK 81 (173)
T ss_pred HHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888887666654 444444443333333444444433333
No 29
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=65.77 E-value=1.2e+02 Score=28.91 Aligned_cols=145 Identities=21% Similarity=0.315 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhcccC-------CCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 015554 110 KKLRDALESLRGRVA-------GRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERA 182 (405)
Q Consensus 110 KkLR~~LesLrGRva-------GrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa 182 (405)
++|..-|..++++.. +....++.++-..|+.+...-++-+.++-.-+.++..+=.-+... -..++-++.+=.
T Consensus 28 ~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e-~~~~~~le~el~ 106 (312)
T PF00038_consen 28 KRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE-LAERKDLEEELE 106 (312)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 456666666776642 223345555556777777766666655554444444332222211 122233333334
Q ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHh
Q 015554 183 FARAEIESARAAVQRVE---ESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKS 257 (405)
Q Consensus 183 ~A~aEIE~ArAaV~Rve---~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~eKs 257 (405)
..+.+++.+..+-...+ +.|++.=.+......+++.+|+..++...=+.+=+ ..-.||..-|+.+|.++....
T Consensus 107 ~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~--~~~~dL~~~L~eiR~~ye~~~ 182 (312)
T PF00038_consen 107 SLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQ--FRSSDLSAALREIRAQYEEIA 182 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT------------------HHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecc--cccccchhhhhhHHHHHHHHH
Confidence 44444444444433332 34445445555556667777777665211122111 123467788888887775443
No 30
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=65.74 E-value=2.1e+02 Score=31.35 Aligned_cols=11 Identities=9% Similarity=-0.218 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 015554 258 KCSLLLRKELA 268 (405)
Q Consensus 258 ~~~v~L~KEL~ 268 (405)
...-.+..++.
T Consensus 441 ~~~~~~~~~l~ 451 (1164)
T TIGR02169 441 EEKEDKALEIK 451 (1164)
T ss_pred HHHHHHHHHHH
Confidence 33333444443
No 31
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=65.24 E-value=98 Score=27.29 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=50.1
Q ss_pred HhhHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCC
Q 015554 168 KASEDAKKLVDEER-----------AFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQP 236 (405)
Q Consensus 168 qASeDAkkiV~eER-----------a~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~P 236 (405)
.|-.+|.+||.+.| ..|..||+.=|+- -++-|+..+.....+.....++|.+|.++
T Consensus 13 ~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~---kE~ef~~~ea~~~g~~~~~~~~l~~et~~---------- 79 (113)
T TIGR01147 13 QAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQ---REKEFKEFEAKHLGGNGAAEEKAEAETQA---------- 79 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCcchHHHHHHHHHHH----------
Confidence 47777777777666 4566677766652 34445544443333334456777777654
Q ss_pred ccccccHHHHHHHHHHHHHHhHHHHHHHHH
Q 015554 237 SKVMDMEHELRALRIQLAEKSKCSLLLRKE 266 (405)
Q Consensus 237 SKvMDME~El~~LR~ql~eKs~~~v~L~KE 266 (405)
+|..|...++.+...+|.+.=.
T Consensus 80 --------ki~~ik~~~~~~~~~Vv~~Ll~ 101 (113)
T TIGR01147 80 --------KIREIKKAVQKNKDAVIKDLLH 101 (113)
T ss_pred --------HHHHHHHHHHHhHHHHHHHHHH
Confidence 6888888888888888776543
No 32
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=65.24 E-value=1.2e+02 Score=28.36 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHhhccc
Q 015554 105 KHVLLKKLRDALESLRGRV 123 (405)
Q Consensus 105 r~vLLKkLR~~LesLrGRv 123 (405)
..+|-|.+++.|+.=+.++
T Consensus 66 ~k~l~kPi~~~L~~R~~~I 84 (205)
T PRK06231 66 IFLFWKPTQRFLNKRKELI 84 (205)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556677777777655444
No 33
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=64.60 E-value=1e+02 Score=27.24 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHhhcccC
Q 015554 105 KHVLLKKLRDALESLRGRVA 124 (405)
Q Consensus 105 r~vLLKkLR~~LesLrGRva 124 (405)
+..|.+.+..+|+.=+.++.
T Consensus 40 ~k~l~~Pi~~~l~~R~~~I~ 59 (156)
T CHL00118 40 NIILYKPLLKVLDERKEYIR 59 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777788888877665554
No 34
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=63.99 E-value=27 Score=34.65 Aligned_cols=84 Identities=19% Similarity=0.318 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhhhhcccCCceeeccccccCcc--eeEeeCCCCCCCCC--------------------CcceeEEEecCC
Q 015554 261 LLLRKELAMSKRIEEKLSDSYELDGSEALGSY--LRIKPCSNNGPELS--------------------KCSIQWYRVPSE 318 (405)
Q Consensus 261 v~L~KEL~~~kr~~en~~~~yeLeG~e~LGS~--L~i~~~~d~~~dlS--------------------kcsiQWyRv~~~ 318 (405)
...+..|+..++..=- ...|.+.-....|.. ||+---++..++.+ ++.|+=||+.|-
T Consensus 123 ~~~~~~L~~L~ktNv~-n~~F~I~hdG~fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~y~l~P~ 201 (314)
T PF04111_consen 123 EYASNQLDRLRKTNVY-NDTFHIWHDGPFGTINGLRLGRLPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQRYRLVPM 201 (314)
T ss_dssp HHHHHHHHCHHT--TT-TTT--EEEETTEEEETTEEE--BTTB---HHHHHHHHHHHHHHHHHHHHHCT---SSEEEE--
T ss_pred HHHHHHHHHHHhcCch-hceeeEeecCCeeeECCeeeccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCcccceeEec
Confidence 3455666644443311 144544433355543 55554444444443 445556999998
Q ss_pred CCccccccc------cccccccCCCCcccceee
Q 015554 319 GGKRELISG------ATKSVYAPEPFDVGRILQ 345 (405)
Q Consensus 319 gsk~E~IsG------Atk~~YAPEP~DVGr~Lq 345 (405)
||.--++.- .+-|.|.+.-|.+|++..
T Consensus 202 Gs~S~I~~~~~~~~~~~~~ly~~~~~~~~~~f~ 234 (314)
T PF04111_consen 202 GSFSKIEKLEGDKDKTTYPLYSSGSFSLGRLFS 234 (314)
T ss_dssp GGG-EEEECS---TCEEEESS--SS----GGG-
T ss_pred CCCCEEEEeccCCCCeEEecccCCCchhhhhhh
Confidence 887666543 445566666666666544
No 35
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=63.91 E-value=82 Score=25.97 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=22.2
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015554 166 LKKASEDAKKLVDEERAFARAEIESARAAVQR 197 (405)
Q Consensus 166 lKqASeDAkkiV~eERa~A~aEIE~ArAaV~R 197 (405)
|.+|-.+|..||++.|.....=+..|+.-...
T Consensus 9 Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ 40 (105)
T PF03179_consen 9 LLEAEKEAQEIVEEARKEREQRLKQAKEEAEK 40 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777766666666665554
No 36
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=61.39 E-value=1.3e+02 Score=29.56 Aligned_cols=85 Identities=16% Similarity=0.276 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----HHHHHHh--hhhc-CcccHHHHHHHHHHHHhhhhcc-CCcccc
Q 015554 170 SEDAKKLVDEERAFARAEIESARAAVQRVEES-----LQEHEQM--SRAS-GKQDFEELMKEVQEARRIKMLH-QPSKVM 240 (405)
Q Consensus 170 SeDAkkiV~eERa~A~aEIE~ArAaV~Rve~a-----l~Eqe~~--s~~s-~kqd~e~L~~EVqEARRIKmLH-~PSKvM 240 (405)
..+|...++++=..++.+++.|+.+++..+.. .+++... ...+ -..++.++.-+..+.|.. +-- +| .|.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~-~~~~~P-~v~ 245 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSI-TPEQNP-QVP 245 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCC-chH
Confidence 35555566666666666666666555554431 1111100 0000 011444445555555432 222 33 577
Q ss_pred ccHHHHHHHHHHHHHH
Q 015554 241 DMEHELRALRIQLAEK 256 (405)
Q Consensus 241 DME~El~~LR~ql~eK 256 (405)
..+.+|.+|+.||.+-
T Consensus 246 ~l~~~i~~l~~~i~~e 261 (362)
T TIGR01010 246 SLQARIKSLRKQIDEQ 261 (362)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8889999999998763
No 37
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=60.63 E-value=1.5e+02 Score=31.08 Aligned_cols=85 Identities=24% Similarity=0.316 Sum_probs=59.0
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccH
Q 015554 139 EALAVQLTQREGELIQEKAEVKKLADF-LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDF 217 (405)
Q Consensus 139 eaLavqltqrE~ELiQeK~EVkKlA~~-lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~ 217 (405)
+|+.-+.+.||.+- +...|-..-|+- +-.|--+|.+|+.+..|.+.+.|-.|++=+.|..+.|.|-.+........=.
T Consensus 249 ~Af~~v~~Are~~~-~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~kaP~vtr~RlY 327 (419)
T PRK10930 249 AAFDDAIAARENEQ-QYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAPEITRERLY 327 (419)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCHHHHHHHHH
Confidence 44444455555543 344455555443 4478889999999999999999999999999999999887777766655433
Q ss_pred HHHHHHH
Q 015554 218 EELMKEV 224 (405)
Q Consensus 218 e~L~~EV 224 (405)
=+-|++|
T Consensus 328 letme~v 334 (419)
T PRK10930 328 IETMEKV 334 (419)
T ss_pred HHHHHHH
Confidence 3334443
No 38
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=59.71 E-value=2.6e+02 Score=30.40 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 015554 242 MEHELRALRIQLAEKSKCSLLLRKELAMS 270 (405)
Q Consensus 242 ME~El~~LR~ql~eKs~~~v~L~KEL~~~ 270 (405)
++.++..|..++.........+++++...
T Consensus 864 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 892 (1179)
T TIGR02168 864 LEELIEELESELEALLNERASLEEALALL 892 (1179)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666666533
No 39
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=59.23 E-value=40 Score=36.28 Aligned_cols=79 Identities=18% Similarity=0.315 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHH
Q 015554 172 DAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRI 251 (405)
Q Consensus 172 DAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ 251 (405)
|++.|++.+.=....+++.+++.+-..++.+..--...- .+++++++++-|.+.+- +-+--|...--|.-|+..|+.
T Consensus 150 ~~~eil~~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp--~~~~~~~yk~~v~~i~~-~~ik~p~~i~~~~~e~d~lk~ 226 (555)
T TIGR03545 150 DPRALLKGEDLKTVETAEEIEKSLKAMQQKWKKRKKDLP--NKQDLEEYKKRLEAIKK-KDIKNPLELQKIKEEFDKLKK 226 (555)
T ss_pred CHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHH
Confidence 455555555555555555555544444444443332222 34455555544444332 222334433334444444433
Q ss_pred HH
Q 015554 252 QL 253 (405)
Q Consensus 252 ql 253 (405)
++
T Consensus 227 e~ 228 (555)
T TIGR03545 227 EG 228 (555)
T ss_pred HH
Confidence 33
No 40
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=58.56 E-value=1.4e+02 Score=26.87 Aligned_cols=71 Identities=17% Similarity=0.268 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhH
Q 015554 105 KHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFA 184 (405)
Q Consensus 105 r~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A 184 (405)
+.++.+.+.++|+.=+.++. +++++|-..-+-....+.+-|.. |.+|-..|..|+++.+..|
T Consensus 36 ~~~l~~pi~~~l~~R~~~I~----~~l~~Ae~~~~eA~~~~~e~e~~--------------l~~a~~ea~~ii~~a~~~a 97 (173)
T PRK13453 36 KKFAWGPLKDVMDKRERDIN----RDIDDAEQAKLNAQKLEEENKQK--------------LKETQEEVQKILEDAKVQA 97 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 45667778888776555443 23333333322222222222222 4445555555555555555
Q ss_pred HHHHHHHHH
Q 015554 185 RAEIESARA 193 (405)
Q Consensus 185 ~aEIE~ArA 193 (405)
..+.+...+
T Consensus 98 ~~~~~~~~~ 106 (173)
T PRK13453 98 RQQQEQIIH 106 (173)
T ss_pred HHHHHHHHH
Confidence 554444433
No 41
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=58.18 E-value=48 Score=26.74 Aligned_cols=65 Identities=12% Similarity=0.180 Sum_probs=34.9
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccc-----ccccccccccCCCCcccceeeeEeecCCeEEEE
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKREL-----ISGATKSVYAPEPFDVGRILQAEITYNGQQITL 357 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~-----IsGAtk~~YAPEP~DVGr~LqadI~~~g~k~~~ 357 (405)
.|+-..|.....+.. +.-.+.|||..+.+..+.+ +++.....|.++. +-+|. .+.+..++...+|
T Consensus 5 ~G~~vtL~C~~~~~~--~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~-~~~rf-~~~~~~~~~~~~L 74 (107)
T cd07700 5 TNNTVKLSCEAKGIS--ENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEV-SQEKF-SIRVTSDSSRYRL 74 (107)
T ss_pred CCCCEEEEEEEecCC--CCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEcccc-ccCcE-EEEEECCCCEEEE
Confidence 466666665433221 2337999999885322321 2444456677663 55664 4444444444444
No 42
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.76 E-value=3.7e+02 Score=31.51 Aligned_cols=16 Identities=13% Similarity=0.134 Sum_probs=8.7
Q ss_pred CCChhhHHHHHHHHHH
Q 015554 125 GRNKDDVEEAIAMVEA 140 (405)
Q Consensus 125 GrnKddveeaismVea 140 (405)
.++.+++++-|.-++.
T Consensus 821 ~~s~~ele~ei~~~~~ 836 (1311)
T TIGR00606 821 DRTVQQVNQEKQEKQH 836 (1311)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3455666666555433
No 43
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=57.45 E-value=74 Score=25.81 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015554 159 VKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHE 206 (405)
Q Consensus 159 VkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe 206 (405)
+..+..+++.+++++...+++-|..+..-++.+|..+......+.++.
T Consensus 11 ~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~ 58 (94)
T PF05957_consen 11 RADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQA 58 (94)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888889999999999999999999999888887777666654
No 44
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=57.40 E-value=3.3e+02 Score=30.83 Aligned_cols=99 Identities=28% Similarity=0.362 Sum_probs=61.8
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------HHHhhhhc
Q 015554 141 LAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQE--------HEQMSRAS 212 (405)
Q Consensus 141 LavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~E--------qe~~s~~s 212 (405)
|-..|.|-..++---++|.-.|.+....-.++ ...++-+|..-+.||-.++.-=+|.=+=+-| |.+.|.-.
T Consensus 39 l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~-~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk 117 (717)
T PF09730_consen 39 LENELKQLRQELSNVQAENERLSQLNQELRKE-CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLK 117 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 33344444444555556666666666555555 4678899999999999998888887543322 33344444
Q ss_pred Ccc-cHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHH
Q 015554 213 GKQ-DFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAE 255 (405)
Q Consensus 213 ~kq-d~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~e 255 (405)
..| +.|+|+-||.- ++-|+.-|+.|+.|
T Consensus 118 ~sQvefE~~Khei~r---------------l~Ee~~~l~~qlee 146 (717)
T PF09730_consen 118 QSQVEFEGLKHEIKR---------------LEEEIELLNSQLEE 146 (717)
T ss_pred HhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHH
Confidence 445 88888877642 45566666666544
No 45
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=57.29 E-value=2e+02 Score=29.61 Aligned_cols=76 Identities=25% Similarity=0.327 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-HHHHhhHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHH
Q 015554 130 DVEEAIAMVEALAVQLTQREGELIQEKAEVKKLAD-FLKKASEDAKKLVDEER--AFARAEIESARAAVQRVEESLQEH 205 (405)
Q Consensus 130 dveeaismVeaLavqltqrE~ELiQeK~EVkKlA~-~lKqASeDAkkiV~eER--a~A~aEIE~ArAaV~Rve~al~Eq 205 (405)
.++.|-+-+.+.-.++-.-+..+.+.++.+.+-.. -|++|..|..|...=.. ...+.|++.|+++++..+..+.-.
T Consensus 92 al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a 170 (352)
T COG1566 92 ALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAAA 170 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555666666666666666 48888888888766553 334778888888777777766443
No 46
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=56.91 E-value=55 Score=29.53 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=20.9
Q ss_pred hcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHH
Q 015554 211 ASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEK 256 (405)
Q Consensus 211 ~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~eK 256 (405)
...++|+++|++|+.. -|.|+.+|+.|...-
T Consensus 157 ~~~~~ei~~lk~el~~---------------~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEK---------------KEKEIEALKKQSEGL 187 (192)
T ss_pred hhhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH
Confidence 3345577777777776 567777777776543
No 47
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=56.70 E-value=1.4e+02 Score=26.30 Aligned_cols=47 Identities=21% Similarity=0.257 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHH
Q 015554 104 EKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQ 154 (405)
Q Consensus 104 er~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQ 154 (405)
=+.+|.|.+.++|+.=+.++.+ ++++|=..-+-..-.+.+-|..|.+
T Consensus 25 L~~fl~kpi~~~l~~R~~~I~~----~l~~Ae~~~~ea~~~~~e~e~~l~~ 71 (164)
T PRK14473 25 LRTFLYRPVLNLLNERTRRIEE----SLRDAEKVREQLANAKRDYEAELAK 71 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888887666643 4555544443333333333333333
No 48
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=56.52 E-value=1e+02 Score=28.55 Aligned_cols=75 Identities=11% Similarity=0.168 Sum_probs=51.3
Q ss_pred hchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 015554 103 LEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERA 182 (405)
Q Consensus 103 Ler~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa 182 (405)
+=++++++++..+|+.=+.++.| ++++|-.. +.|.+-+.+. .-.-|+.|...|..|..+.|.
T Consensus 26 ll~kf~~ppI~~iLe~R~~~I~~----~L~~Ae~~---------k~eAe~l~a~-----ye~~L~~Ar~eA~~I~~e~~~ 87 (155)
T PRK06569 26 FVYKFITPKAEEIFNNRQTNIQD----NITQADTL---------TIEVEKLNKY-----YNEEIDKTNTEIDRLKKEKID 87 (155)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHh----HHHHHHHH---------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999987766653 44444332 2233322222 234578899999999999999
Q ss_pred hHHHHHHHHHHHH
Q 015554 183 FARAEIESARAAV 195 (405)
Q Consensus 183 ~A~aEIE~ArAaV 195 (405)
.+.+|.+..|+++
T Consensus 88 ~~~a~~~~~~~~~ 100 (155)
T PRK06569 88 SLESEFLIKKKNL 100 (155)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988888764
No 49
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=56.38 E-value=1.7e+02 Score=27.04 Aligned_cols=10 Identities=40% Similarity=0.537 Sum_probs=5.1
Q ss_pred eecCCeEEEE
Q 015554 348 ITYNGQQITL 357 (405)
Q Consensus 348 I~~~g~k~~~ 357 (405)
|...|...++
T Consensus 223 i~~~gs~s~i 232 (302)
T PF10186_consen 223 ITPSGSRSTI 232 (302)
T ss_pred cccCccccch
Confidence 4555555544
No 50
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=56.28 E-value=1.6e+02 Score=26.94 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHH
Q 015554 107 VLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARA 186 (405)
Q Consensus 107 vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~a 186 (405)
.+-|.|...|+.=.-++. +++++|=..=+-++..+.+.|..|-+-+.|-.. .+++|-+.|.++.++.+..|+.
T Consensus 24 fawkPI~~~LeeR~~~I~----~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~---Ii~~A~~~a~~~~~ea~~eA~~ 96 (154)
T PRK06568 24 PAKKAILNSLDAKILEVQ----EKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQ---MIEESNEVTKKIIQEKTKEIEE 96 (154)
T ss_pred HhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666665444442 355555444444444444444444433333332 3445555555555555555555
Q ss_pred HHHH
Q 015554 187 EIES 190 (405)
Q Consensus 187 EIE~ 190 (405)
|++.
T Consensus 97 ea~r 100 (154)
T PRK06568 97 FLEH 100 (154)
T ss_pred HHHH
Confidence 4443
No 51
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=55.46 E-value=5.3e+02 Score=32.56 Aligned_cols=150 Identities=25% Similarity=0.288 Sum_probs=100.5
Q ss_pred HHHHHhhcccCCC---ChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHH---------------
Q 015554 114 DALESLRGRVAGR---NKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKK--------------- 175 (405)
Q Consensus 114 ~~LesLrGRvaGr---nKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkk--------------- 175 (405)
+.|+..+.|+.|- ..-|++..-+.+..|..++-+-+.-|.+.|....+++.-+.+|..+++.
T Consensus 1403 ~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~ 1482 (1930)
T KOG0161|consen 1403 ASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEEL 1482 (1930)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4455555554432 2346777888899999999999999999998888888888776655432
Q ss_pred -----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcc--cHHHHHHHHHHHHhhhhccCCccccccHHHHHH
Q 015554 176 -----LVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQ--DFEELMKEVQEARRIKMLHQPSKVMDMEHELRA 248 (405)
Q Consensus 176 -----iV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kq--d~e~L~~EVqEARRIKmLH~PSKvMDME~El~~ 248 (405)
-++.+...+..||+.+--.+.-.+..++|-++.....+.+ |+..--+|...+.+ |+=++.|-.+-+..+
T Consensus 1483 ~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le----~eE~~~lr~~~~~~~ 1558 (1930)
T KOG0161|consen 1483 LEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALE----AEEDKKLRLQLELQQ 1558 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHH
Confidence 2345667788889999889999999998888887776653 33333334443322 345555555566666
Q ss_pred HHHH----HHHHhHHHHHHHHHH
Q 015554 249 LRIQ----LAEKSKCSLLLRKEL 267 (405)
Q Consensus 249 LR~q----l~eKs~~~v~L~KEL 267 (405)
+|.+ |++|-..+..++|.+
T Consensus 1559 ~r~e~er~l~ek~Ee~E~~rk~~ 1581 (1930)
T KOG0161|consen 1559 LRSEIERRLQEKDEEIEELRKNL 1581 (1930)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 6665 455555555555554
No 52
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=54.85 E-value=1.9e+02 Score=27.25 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=21.9
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015554 164 DFLKKASEDAKKLVDEERAFARAEIESARAAV 195 (405)
Q Consensus 164 ~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV 195 (405)
.-|++|...|..|+++.|..|..+.+..++..
T Consensus 112 ~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a 143 (204)
T PRK09174 112 QELAQARAKAHSIAQAAREAAKAKAEAERAAI 143 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777777777777766665443
No 53
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=54.49 E-value=1.4e+02 Score=25.70 Aligned_cols=75 Identities=24% Similarity=0.372 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHH
Q 015554 106 HVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFAR 185 (405)
Q Consensus 106 ~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~ 185 (405)
..+.|.+.+.|+.=+.++. +++++|-..-+.....+.+-+..|.+-+.|... .+..|-.+|.++.++.+..|+
T Consensus 23 ~~~~~pi~~~l~~R~~~I~----~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~---i~~~a~~ea~~~~~~~~~~a~ 95 (156)
T PRK05759 23 KFVWPPIMKALEERQKKIA----DGLAAAERAKKELELAQAKYEAQLAEARAEAAE---IIEQAKKRAAQIIEEAKAEAE 95 (156)
T ss_pred HHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888877666553 355556555555555555555555555554433 234444555555544444444
Q ss_pred HH
Q 015554 186 AE 187 (405)
Q Consensus 186 aE 187 (405)
.|
T Consensus 96 ~e 97 (156)
T PRK05759 96 AE 97 (156)
T ss_pred HH
Confidence 44
No 54
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=54.47 E-value=1.5e+02 Score=26.07 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHhhcccC
Q 015554 105 KHVLLKKLRDALESLRGRVA 124 (405)
Q Consensus 105 r~vLLKkLR~~LesLrGRva 124 (405)
+..|.|.+..+|+.=+.++.
T Consensus 26 ~~~l~~pi~~~l~~R~~~I~ 45 (164)
T PRK14471 26 AKFAWKPILGAVKEREDSIK 45 (164)
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 45677888888877665554
No 55
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=54.35 E-value=1.5e+02 Score=26.10 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHhHHHH
Q 015554 169 ASEDAKKLVDEERAFARAE 187 (405)
Q Consensus 169 ASeDAkkiV~eERa~A~aE 187 (405)
|-..|+.|+++.+..|..+
T Consensus 86 A~~ea~~ii~~A~~~a~~~ 104 (156)
T CHL00118 86 ARKEAQLEITQSQKEAKEI 104 (156)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444433333333
No 56
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=54.19 E-value=5.5e+02 Score=32.40 Aligned_cols=141 Identities=24% Similarity=0.338 Sum_probs=78.8
Q ss_pred HHHHHHHHhhcccCCCC---hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHH----------H
Q 015554 111 KLRDALESLRGRVAGRN---KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKL----------V 177 (405)
Q Consensus 111 kLR~~LesLrGRvaGrn---KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkki----------V 177 (405)
+.|-=+|..+-.+.|.. .+.+.+.=..++-|..||..+|.||-+-..++......+.++..-.+.+ .
T Consensus 1034 ~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1034 RIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333344433 4566667778999999999999999988887776655544443332222 2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh--hhcCcccHHH-HHHHHHHHHhhhhccCCccccccHHHHHHHHHHHH
Q 015554 178 DEERAFARAEIESARAAVQRVEESLQEHEQMS--RASGKQDFEE-LMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLA 254 (405)
Q Consensus 178 ~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s--~~s~kqd~e~-L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~ 254 (405)
+.| -+++++.|.+|+...+-=++|++.-... ....++++.. .-.|+++.||.- --..|+.|..+..||+..+
T Consensus 1114 e~e-r~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~l----eee~~~~e~~~~~lr~~~~ 1188 (1930)
T KOG0161|consen 1114 EAE-RASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDL----EEETLDHEAQIEELRKKHA 1188 (1930)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHH
Confidence 233 3467777777776655444444332221 1111112221 223555555542 1356778888888886544
Q ss_pred HH
Q 015554 255 EK 256 (405)
Q Consensus 255 eK 256 (405)
..
T Consensus 1189 ~~ 1190 (1930)
T KOG0161|consen 1189 DS 1190 (1930)
T ss_pred HH
Confidence 33
No 57
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=53.43 E-value=1.5e+02 Score=27.95 Aligned_cols=72 Identities=19% Similarity=0.140 Sum_probs=55.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 015554 128 KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEH 205 (405)
Q Consensus 128 KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eq 205 (405)
.++|.+|+..+ +-.++|.+-...++|-.+.+ .+..|-.+|.+.+.+..+.|.+-+..|++-+.++...+++-
T Consensus 142 p~~v~~A~~~~-----~~A~~~~~a~~~~Aea~~~~-~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~ 213 (262)
T cd03407 142 DAEVKRAMNEI-----NAAQRQRVAAVHKAEAEKIK-DIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAV 213 (262)
T ss_pred CHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677776653 33456666666677766664 47889999999999999999999999999999998887754
No 58
>PRK00106 hypothetical protein; Provisional
Probab=53.26 E-value=3.3e+02 Score=29.62 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=15.2
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 015554 164 DFLKKASEDAKKLVDEERAFARAEIESARA 193 (405)
Q Consensus 164 ~~lKqASeDAkkiV~eERa~A~aEIE~ArA 193 (405)
.++++|..+|++|..+.+..|.+++..++.
T Consensus 46 ~IleeAe~eAe~I~keA~~EAke~~ke~~l 75 (535)
T PRK00106 46 NLRGKAERDAEHIKKTAKRESKALKKELLL 75 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444443333
No 59
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=53.13 E-value=2.1e+02 Score=27.26 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=15.3
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHH
Q 015554 166 LKKASEDAKKLVDEERAFARAEIESA 191 (405)
Q Consensus 166 lKqASeDAkkiV~eERa~A~aEIE~A 191 (405)
|.+|-+.|..|+++.++.|..-.+.+
T Consensus 46 l~~Ar~eA~~Ii~~A~~~a~~~~~~~ 71 (255)
T TIGR03825 46 LEKAEAEAAQIIEQAEAQAAAIREQI 71 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666665544433
No 60
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=52.66 E-value=1.7e+02 Score=26.13 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=18.3
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015554 165 FLKKASEDAKKLVDEERAFARAEIESARAAV 195 (405)
Q Consensus 165 ~lKqASeDAkkiV~eERa~A~aEIE~ArAaV 195 (405)
-|..|...|..|+++.+..|..+.+.+.+..
T Consensus 79 ~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A 109 (174)
T PRK07352 79 KLAQAQQEAERIRADAKARAEAIRAEIEKQA 109 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666655555433
No 61
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=51.43 E-value=1.9e+02 Score=26.15 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=14.6
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHH
Q 015554 166 LKKASEDAKKLVDEERAFARAEIESAR 192 (405)
Q Consensus 166 lKqASeDAkkiV~eERa~A~aEIE~Ar 192 (405)
|.+|...|+.|+++.+..|..+.+..+
T Consensus 88 L~~A~~ea~~Ii~~A~~~a~~~~e~~~ 114 (184)
T PRK13455 88 QREVQEQADRIVAAAKDEAQAAAEQAK 114 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666655555555444433
No 62
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=51.35 E-value=2.6e+02 Score=28.45 Aligned_cols=78 Identities=23% Similarity=0.251 Sum_probs=43.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHH
Q 015554 178 DEERAFARAEIESARAAVQRVEESLQEHEQMSR-------ASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALR 250 (405)
Q Consensus 178 ~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~-------~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR 250 (405)
+++...+++++..+++....+...+........ ..-.+.+.++..+.++.+. +....-.+|+++..+|..|+
T Consensus 210 ~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~-~y~~~hP~v~~l~~qi~~l~ 288 (498)
T TIGR03007 210 QEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRL-RYTDKHPDVIATKREIAQLE 288 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHH-HhcccChHHHHHHHHHHHHH
Confidence 344455555555556655555554442111111 0111246666666666654 33444468899999999999
Q ss_pred HHHHHH
Q 015554 251 IQLAEK 256 (405)
Q Consensus 251 ~ql~eK 256 (405)
.++.+-
T Consensus 289 ~~l~~~ 294 (498)
T TIGR03007 289 EQKEEE 294 (498)
T ss_pred HHHHhh
Confidence 988553
No 63
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=51.11 E-value=1.8e+02 Score=26.00 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=18.6
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015554 166 LKKASEDAKKLVDEERAFARAEIESARAAVQ 196 (405)
Q Consensus 166 lKqASeDAkkiV~eERa~A~aEIE~ArAaV~ 196 (405)
|.+|-..|+.|+++.+..|..+.+..++...
T Consensus 77 l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~ 107 (173)
T PRK13460 77 LNSAKDEANAIVAEAKSDALKLKNKLLEETN 107 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666665554443
No 64
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=50.96 E-value=1.4e+02 Score=26.77 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=26.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015554 163 ADFLKKASEDAKKLVDEERAFARAEIESARAAVQRV 198 (405)
Q Consensus 163 A~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rv 198 (405)
...+++|-..|+.|+++.+..|...++.|+.-.+..
T Consensus 9 ~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~ 44 (198)
T PRK03963 9 QEINREAEQKIEYILEEAQKEAEKIKEEARKRAESK 44 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888776655443
No 65
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=50.63 E-value=1.6e+02 Score=25.30 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=16.1
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 015554 165 FLKKASEDAKKLVDEERAFARAEIESARAA 194 (405)
Q Consensus 165 ~lKqASeDAkkiV~eERa~A~aEIE~ArAa 194 (405)
-|.+|...|..|+++.+..|..+.+..++.
T Consensus 64 ~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~ 93 (156)
T PRK05759 64 QLAEARAEAAEIIEQAKKRAAQIIEEAKAE 93 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554443
No 66
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=50.41 E-value=1.8e+02 Score=25.57 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=14.5
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015554 166 LKKASEDAKKLVDEERAFARAEIESARAAVQ 196 (405)
Q Consensus 166 lKqASeDAkkiV~eERa~A~aEIE~ArAaV~ 196 (405)
|..|...|..|+++.+..|...++.|+....
T Consensus 63 L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~ 93 (159)
T PRK09173 63 RKEAEKEAADIVAAAEREAEALTAEAKRKTE 93 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555444444444444333
No 67
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.24 E-value=2e+02 Score=26.77 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=31.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH
Q 015554 176 LVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR 228 (405)
Q Consensus 176 iV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEAR 228 (405)
-..+||...-++++..+.-...++.-|+ ..+...++-++.|+++++.++
T Consensus 100 ~~~~eR~~~l~~l~~l~~~~~~l~~el~----~~~~~Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 100 EESEEREELLEELEELKKELKELKKELE----KYSENDPEKIEKLKEEIKIAK 148 (188)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCHHHHHHHHHHHHHHH
Confidence 3447777777777777777666665555 334445566777777766655
No 68
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=48.66 E-value=4.1e+02 Score=29.31 Aligned_cols=62 Identities=37% Similarity=0.518 Sum_probs=40.5
Q ss_pred HhHHHhhhchhHHHhhhHHHHhHHhhhhchHHHHHHHHHHHHHhhcccCCC---------ChhhHHHHHHHHHH
Q 015554 76 DLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGR---------NKDDVEEAIAMVEA 140 (405)
Q Consensus 76 DLA~KFEKgl~~AakLs~EaK~reva~Ler~vLLKkLR~~LesLrGRvaGr---------nKddveeaismVea 140 (405)
-++..||.-+++|.++-+|.. ++.+.+|.. ++||++-++.|+.++.-. +.++....|+=+||
T Consensus 85 ~ik~~ye~El~~ar~~l~e~~-~~ra~~e~e--i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leA 155 (546)
T KOG0977|consen 85 GIKAKYEAELATARKLLDETA-RERAKLEIE--ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEA 155 (546)
T ss_pred chhHHhhhhHHHHHHHHHHHH-HHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhh
Confidence 478899999999999999942 344555544 467777777766655432 34445555555554
No 69
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=48.57 E-value=2e+02 Score=25.73 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhH
Q 015554 105 KHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFA 184 (405)
Q Consensus 105 r~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A 184 (405)
+..+.|.+...|+.=+.++. +++++|-..-+-....+.+-|.. |..|...|..|+++.|..|
T Consensus 36 ~~~l~kpi~~~l~~R~~~I~----~~l~~Ae~~~~eA~~~~~e~e~~--------------L~~a~~ea~~ii~~A~~~a 97 (175)
T PRK14472 36 KKIAWGPILSALEEREKGIQ----SSIDRAHSAKDEAEAILRKNREL--------------LAKADAEADKIIREGKEYA 97 (175)
T ss_pred HHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 34566777777776555543 23444444333333333333333 3444444445555555444
Q ss_pred HHHHHHHH
Q 015554 185 RAEIESAR 192 (405)
Q Consensus 185 ~aEIE~Ar 192 (405)
..+.+.+.
T Consensus 98 ~~~~~~~~ 105 (175)
T PRK14472 98 EKLRAEIT 105 (175)
T ss_pred HHHHHHHH
Confidence 44444433
No 70
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=48.27 E-value=2.1e+02 Score=29.78 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=8.8
Q ss_pred cccCCCCcccceeeeEe
Q 015554 332 VYAPEPFDVGRILQAEI 348 (405)
Q Consensus 332 ~YAPEP~DVGr~LqadI 348 (405)
.-|-|=|.|..+|..+.
T Consensus 201 ~~~~el~~v~~~l~~~~ 217 (445)
T PRK13428 201 TLADELVSVAKLLDREP 217 (445)
T ss_pred HHHHHHHHHHHHHcccH
Confidence 33445566666555443
No 71
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=48.21 E-value=2.4e+02 Score=26.45 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=8.8
Q ss_pred HhhHHHHHHHHHHHHhHHHHH
Q 015554 168 KASEDAKKLVDEERAFARAEI 188 (405)
Q Consensus 168 qASeDAkkiV~eERa~A~aEI 188 (405)
+|...|+.|+++.+..|..+.
T Consensus 111 ~A~~eA~~Ii~~A~~eAe~~~ 131 (205)
T PRK06231 111 NALAQAKEIIDQANYEALQLK 131 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 72
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=48.08 E-value=2e+02 Score=27.40 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=9.4
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHH
Q 015554 165 FLKKASEDAKKLVDEERAFARAE 187 (405)
Q Consensus 165 ~lKqASeDAkkiV~eERa~A~aE 187 (405)
.+.+|-..|.+|+++.+..+..|
T Consensus 43 Ii~eA~~EAe~ii~~A~~eae~e 65 (207)
T PRK01005 43 IIAEAQEEAEKIIRSAEETADQK 65 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333
No 73
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=47.84 E-value=2.7e+02 Score=27.05 Aligned_cols=8 Identities=38% Similarity=0.405 Sum_probs=4.1
Q ss_pred ceeeEeec
Q 015554 382 VEFHVRAP 389 (405)
Q Consensus 382 tEFNVvi~ 389 (405)
--|-|+|.
T Consensus 314 ~~~~V~i~ 321 (346)
T PRK10476 314 QRFPVRIM 321 (346)
T ss_pred EeeeEEEE
Confidence 34555553
No 74
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=47.83 E-value=2.7e+02 Score=27.24 Aligned_cols=139 Identities=28% Similarity=0.341 Sum_probs=79.7
Q ss_pred hHHHHHHHHH----HHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 015554 105 KHVLLKKLRD----ALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180 (405)
Q Consensus 105 r~vLLKkLR~----~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eE 180 (405)
|-.|=++||. -|++||++=.+-|.....-.---+..|--+|--+|--.+.=.+|+.|.=. |-| ||
T Consensus 22 RE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEq---------kYL--EE 90 (205)
T PF12240_consen 22 REQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQ---------KYL--EE 90 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH--HH
Confidence 3344455554 45688876554444333222233455666777777777777788877631 221 22
Q ss_pred HHhHHHHH-HHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHH
Q 015554 181 RAFARAEI-ESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKC 259 (405)
Q Consensus 181 Ra~A~aEI-E~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~eKs~~ 259 (405)
-+.=++-+ ..|.++-+|---.+.+....+-.+.-.++|++. ..-.|.-|||+=|+.|=.+|.||-.-
T Consensus 91 s~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~------------~a~~K~qemE~RIK~LhaqI~EKDAm 158 (205)
T PF12240_consen 91 SAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSLREEEELH------------MANRKCQEMENRIKALHAQIAEKDAM 158 (205)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHH------------HhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333 235666666655555554444322223445442 22346789999999999999999876
Q ss_pred HHHHHHH
Q 015554 260 SLLLRKE 266 (405)
Q Consensus 260 ~v~L~KE 266 (405)
.-.|+.-
T Consensus 159 IkVLQqr 165 (205)
T PF12240_consen 159 IKVLQQR 165 (205)
T ss_pred HHHHHhh
Confidence 6666554
No 75
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=46.94 E-value=1.3e+02 Score=28.86 Aligned_cols=6 Identities=17% Similarity=0.534 Sum_probs=3.4
Q ss_pred eeEeec
Q 015554 384 FHVRAP 389 (405)
Q Consensus 384 FNVvi~ 389 (405)
|.|++.
T Consensus 301 ~~v~i~ 306 (331)
T PRK03598 301 YRLRIV 306 (331)
T ss_pred EEEEEE
Confidence 566554
No 76
>PLN02320 seryl-tRNA synthetase
Probab=46.88 E-value=2.2e+02 Score=30.78 Aligned_cols=99 Identities=16% Similarity=0.263 Sum_probs=56.8
Q ss_pred hhhchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH--hhHHHHHHHH
Q 015554 101 ASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKK--ASEDAKKLVD 178 (405)
Q Consensus 101 a~Ler~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKq--ASeDAkkiV~ 178 (405)
+.||-..+.++.-.+-++|+-|- .+. +|++-+++- -++.+--.++-+-++|-.++++-+++ ..+|+..+++
T Consensus 65 ~mlD~k~ir~n~~~v~~~l~~R~--~~~-~vd~l~~ld----~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~ 137 (502)
T PLN02320 65 AAIDFKWIRDNKEAVAINIRNRN--SNA-NLELVLELY----ENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVE 137 (502)
T ss_pred cccCHHHHHhCHHHHHHHHHhcC--CCc-CHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHH
Confidence 66887777777777777777772 333 366555543 33433344444445555555555543 3456666666
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015554 179 EERAFARAEIESARAAVQRVEESLQEHEQ 207 (405)
Q Consensus 179 eERa~A~aEIE~ArAaV~Rve~al~Eqe~ 207 (405)
+-+.. ..+|....+.+..+++.|++.-.
T Consensus 138 ~~k~l-k~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 138 EGKNL-KEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55533 35666666666666666666443
No 77
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=46.03 E-value=4e+02 Score=28.42 Aligned_cols=36 Identities=22% Similarity=0.120 Sum_probs=23.2
Q ss_pred ccccHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh
Q 015554 239 VMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIE 274 (405)
Q Consensus 239 vMDME~El~~LR~ql~eKs~~~v~L~KEL~~~kr~~ 274 (405)
-++|...|..||....+--...-++++.|..++|.-
T Consensus 399 q~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l 434 (569)
T PRK04778 399 QEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYL 434 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777776666666666677666555443
No 78
>PRK12704 phosphodiesterase; Provisional
Probab=45.93 E-value=4.1e+02 Score=28.51 Aligned_cols=10 Identities=0% Similarity=0.126 Sum_probs=5.2
Q ss_pred eEeecCCeEE
Q 015554 346 AEITYNGQQI 355 (405)
Q Consensus 346 adI~~~g~k~ 355 (405)
+||+.|....
T Consensus 242 vd~iiddtp~ 251 (520)
T PRK12704 242 VDLIIDDTPE 251 (520)
T ss_pred CeEEEcCCCC
Confidence 5666554433
No 79
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=45.89 E-value=2.3e+02 Score=25.58 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=15.0
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHHH
Q 015554 165 FLKKASEDAKKLVDEERAFARAEIE 189 (405)
Q Consensus 165 ~lKqASeDAkkiV~eERa~A~aEIE 189 (405)
-|++|...|+.|+++.+..|..+.+
T Consensus 82 ~L~~Ar~eA~~Ii~~A~~eAe~~~~ 106 (167)
T PRK08475 82 KLEEAKEKAELIVETAKKEAYILTQ 106 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666665533
No 80
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=45.83 E-value=2.1e+02 Score=25.11 Aligned_cols=72 Identities=15% Similarity=0.233 Sum_probs=42.9
Q ss_pred HHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 015554 112 LRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIES 190 (405)
Q Consensus 112 LR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ 190 (405)
|.++|+.=+.++.| ++++|-..-+-..-.+.+-|.+|.+-+.|... .+.+|-.+|..+.++.+..|..+++.
T Consensus 27 i~~~l~~R~~~I~~----~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~---ii~~A~~~a~~~~~~a~~~a~~~~~~ 98 (159)
T PRK09173 27 IARSLDARADRIKN----ELAEARRLREEAQQLLAEYQRKRKEAEKEAAD---IVAAAEREAEALTAEAKRKTEEYVAR 98 (159)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555543 45555555555555566666666666655544 35556666666776666666666655
No 81
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=45.79 E-value=51 Score=30.97 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015554 242 MEHELRALRIQLAEKSKCSLLLRKEL 267 (405)
Q Consensus 242 ME~El~~LR~ql~eKs~~~v~L~KEL 267 (405)
.|.||..||+-|+-|-..|..|++.|
T Consensus 41 vEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 41 VEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 49999999999999999999999987
No 82
>COG1666 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.15 E-value=13 Score=34.90 Aligned_cols=23 Identities=39% Similarity=0.849 Sum_probs=19.6
Q ss_pred HHhhc---ccCCCChhhHHHHHHHHH
Q 015554 117 ESLRG---RVAGRNKDDVEEAIAMVE 139 (405)
Q Consensus 117 esLrG---RvaGrnKddveeaismVe 139 (405)
.++.| ||+|+++||.-..|+||-
T Consensus 125 aqIQGdqVRVtgK~rDDLQaVialvr 150 (165)
T COG1666 125 AQIQGDQVRVTGKKRDDLQAVIALVR 150 (165)
T ss_pred eeeccceEEEeccchhhHHHHHHHHH
Confidence 34555 999999999999999984
No 83
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.78 E-value=3.1e+02 Score=30.84 Aligned_cols=96 Identities=24% Similarity=0.361 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 015554 132 EEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRA 211 (405)
Q Consensus 132 eeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~ 211 (405)
.+-=.+||.|.-+-+-=+.++.+.|.|+-+|=+-|-++....+ ....-.-||+.-.--+.+++..|+|+..
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-----~~~~~~rei~~~~~~I~~L~~~L~e~~~---- 495 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-----DKVRKDREIRARDRRIERLEKELEEKKK---- 495 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3334567777777777777777788888777777766665554 1122235677667777777777777643
Q ss_pred cCcccHHHHHHHHHHHHhhhhccCCcccc
Q 015554 212 SGKQDFEELMKEVQEARRIKMLHQPSKVM 240 (405)
Q Consensus 212 s~kqd~e~L~~EVqEARRIKmLH~PSKvM 240 (405)
.+|+|.++..+.|++++|-.--+.|
T Consensus 496 ----~ve~L~~~l~~l~k~~~lE~sG~g~ 520 (652)
T COG2433 496 ----RVEELERKLAELRKMRKLELSGKGT 520 (652)
T ss_pred ----HHHHHHHHHHHHHHHHhhhhcCCCc
Confidence 6788888888888888876555554
No 84
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=44.77 E-value=3e+02 Score=26.68 Aligned_cols=82 Identities=22% Similarity=0.385 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---cccHHHHHHHHHHHHh
Q 015554 153 IQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASG---KQDFEELMKEVQEARR 229 (405)
Q Consensus 153 iQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~---kqd~e~L~~EVqEARR 229 (405)
++.|..+...--...++-.+..|-+.++ ++..+.|+.-..+.++-..+++....... .+.+..|.+.+.+.|+
T Consensus 182 l~~~~~~~~~ilq~d~~L~~~ek~~~~~----~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 182 LQSKESMENSILQADQQLTEKEKEIEEE----QAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHCHHHHHHHHHH-TTS-HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444433333 34445555555555555555544433322 2366667777777776
Q ss_pred hhhccCCccc
Q 015554 230 IKMLHQPSKV 239 (405)
Q Consensus 230 IKmLH~PSKv 239 (405)
++++...++
T Consensus 258 -~~~~e~e~~ 266 (297)
T PF02841_consen 258 -QLLQEQERL 266 (297)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHHH
Confidence 666655544
No 85
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=43.97 E-value=2.5e+02 Score=25.43 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=15.2
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 015554 165 FLKKASEDAKKLVDEERAFARAEIESARAA 194 (405)
Q Consensus 165 ~lKqASeDAkkiV~eERa~A~aEIE~ArAa 194 (405)
-|.+|...|..++++.+..|..+.+...+.
T Consensus 84 ~L~~A~~ea~~ii~~A~~~ae~~~~~il~~ 113 (184)
T CHL00019 84 RLRQAELEADEIRVNGYSEIEREKENLINQ 113 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444433
No 86
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=43.66 E-value=2.5e+02 Score=25.35 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=26.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015554 148 REGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEE 200 (405)
Q Consensus 148 rE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~ 200 (405)
|+....+.-.+..+.-.-.++.-++++....+.|..|..-|+.|+...+...+
T Consensus 54 R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~ 106 (167)
T PRK08475 54 RINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQ 106 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444555555555555555555555555554433
No 87
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=43.51 E-value=89 Score=25.61 Aligned_cols=59 Identities=27% Similarity=0.391 Sum_probs=42.2
Q ss_pred hchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 015554 103 LEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFL 166 (405)
Q Consensus 103 Ler~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~l 166 (405)
-|...+-+-|+..|++|..-+ +|+++||.+||.-.-++-=.+.|+.+-|.=|..+-+-+
T Consensus 35 ~e~~~~~~eL~~~l~~ie~~L-----~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i 93 (97)
T PF09177_consen 35 EELKWLKRELRNALQSIEWDL-----EDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQI 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHH
Confidence 345566778888888888754 89999999999887666556677777766665554433
No 88
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=43.30 E-value=7.4 Score=44.48 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=26.2
Q ss_pred CCCCCCCCcceeEEEecCCCCccccccccccccccCCCCcccceee
Q 015554 300 NNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQ 345 (405)
Q Consensus 300 d~~~dlSkcsiQWyRv~~~gsk~E~IsGAtk~~YAPEP~DVGr~Lq 345 (405)
=...|||+|+ |||++.- --.|-|+-.|||+.+-
T Consensus 536 ltgiDLS~c~-qW~~f~e------------IrY~R~~~~dvg~~~p 568 (1194)
T KOG4246|consen 536 LTGIDLSNCR-QWNPFLE------------IRYDRVGTDDVGVFSP 568 (1194)
T ss_pred ccccchhhhh-hhcchhe------------eEecccCccccccccc
Confidence 3568999998 9999862 1357888899999887
No 89
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=42.80 E-value=3.1e+02 Score=31.36 Aligned_cols=146 Identities=23% Similarity=0.341 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHH
Q 015554 108 LLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAE 187 (405)
Q Consensus 108 LLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aE 187 (405)
..=.||.++..|. .+++-+++.++....=.||+.+ .+|.|..-...++..-.-|++|-++- -...|
T Consensus 428 ~yL~Lr~a~~rL~---~~~~~~~~~~v~~~LW~lAl~i--EdG~ls~A~~~Lr~AQe~L~eAL~~g---------As~eE 493 (820)
T PF13779_consen 428 HYLGLRSARRRLE---RARTDEALREVADLLWDLALRI--EDGDLSDAERRLRAAQEALREALERG---------ASDEE 493 (820)
T ss_pred HHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHHh--hcCcHHHHHHHHHHHHHHHHHHHHcC---------CCHHH
Confidence 3446888888887 6789999999998888888877 57888877777777777777765531 22344
Q ss_pred HH----HHHHHHHHHHHHHHHHHHhhh-------------hcCcccHHHHHHHHHHHHhh-------hhccCCccccc--
Q 015554 188 IE----SARAAVQRVEESLQEHEQMSR-------------ASGKQDFEELMKEVQEARRI-------KMLHQPSKVMD-- 241 (405)
Q Consensus 188 IE----~ArAaV~Rve~al~Eqe~~s~-------------~s~kqd~e~L~~EVqEARRI-------KmLH~PSKvMD-- 241 (405)
|+ .-|.|+++.=++|.|+..... ....+|++.|+..+|+.-|- .||.+=...|+
T Consensus 494 I~rLm~eLR~A~~~ym~~LAeq~~~~~~~~~~p~~~~~~~~~~~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmenm 573 (820)
T PF13779_consen 494 IARLMQELREAMQDYMQALAEQAQRNPQQQDQPPDQGNSQMMSQQDLQRMMDRIEELARSGRMDEARQLLEQLQQMMENM 573 (820)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhCcccccCcccchhhhccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 43 467888888888877755422 23466999999999986543 45554444433
Q ss_pred ------------cHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015554 242 ------------MEHELRALRIQLAEKSKCSLLLRKEL 267 (405)
Q Consensus 242 ------------ME~El~~LR~ql~eKs~~~v~L~KEL 267 (405)
|..-++.|.+.+.+-...+-+=.+.+
T Consensus 574 q~~~~q~~~~~~~~q~m~~L~dl~r~Qq~L~D~tfr~~ 611 (820)
T PF13779_consen 574 QNAQPQQQQQQEMQQAMEELGDLLRRQQQLMDETFRQL 611 (820)
T ss_pred cccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666666666554444444443
No 90
>PRK01919 tatB sec-independent translocase; Provisional
Probab=42.56 E-value=92 Score=29.52 Aligned_cols=107 Identities=17% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015554 188 IESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKEL 267 (405)
Q Consensus 188 IE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~eKs~~~v~L~KEL 267 (405)
|-.+|-.+.-+.+.+++.... +|+.+++++++++-+ +.+..|+. ..-.+.++|
T Consensus 36 i~k~Rr~~~d~K~ev~~E~e~------dElrk~~~~~e~~~~-----------~v~~si~~----------~~~~~~~~~ 88 (169)
T PRK01919 36 FGRAQRYINDVKAEVSREIEL------DELRKMKTDFESAAR-----------DVENTIHD----------NLSEHESDL 88 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHH-----------HHHHHHHH----------HHHHHHhhH
Q ss_pred HHhhhhhcccCCceeeccccccCcceeEeeCCCCCCCCCCc-----------ceeEEEecCCCCcccccccccc
Q 015554 268 AMSKRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKC-----------SIQWYRVPSEGGKRELISGATK 330 (405)
Q Consensus 268 ~~~kr~~en~~~~yeLeG~e~LGS~L~i~~~~d~~~dlSkc-----------siQWyRv~~~gsk~E~IsGAtk 330 (405)
.-.-......+....+++... |.....++-++. .=|||+-.+ |-..-++|||-|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~k~wr~k~~a~p~wyk~~~-~~rt~~~sgaar 153 (169)
T PRK01919 89 NDAWNSAVGSLGSAAADAPAV--------GSWRSSPPAYRHKRKNWRVKQAATPQWYKRAS-GVRTRVQSGAAR 153 (169)
T ss_pred HHHHhhccCCccccccCcccc--------cccccCCccccCccccccccCCCCcHHHHHhh-cchhHhhhhHHH
No 91
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=42.27 E-value=4.9e+02 Score=29.04 Aligned_cols=170 Identities=22% Similarity=0.269 Sum_probs=99.9
Q ss_pred CccceeeccCCCCCcccCCCCccccCCCCCCCchhHHHHHHHHHHHHHHhcccchhHhHHHhhhchhHHHhhhHHHHhHH
Q 015554 20 VSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLRE 99 (405)
Q Consensus 20 vsadv~f~~~~FP~Yk~g~n~qii~~~dd~~~~slKEvVakEta~L~~q~kRLSVRDLA~KFEKgl~~AakLs~EaK~re 99 (405)
+-+|+..-|+++|+ ...+.+..||++..+. ..++ .....++++..++.
T Consensus 278 ~~~D~e~lr~~l~d----------~s~~~~~lpsv~~Llq--------e~~a--------------~v~q~~~e~~~l~~ 325 (632)
T PF14817_consen 278 VRADAEYLRNQLED----------VSDESQALPSVHQLLQ--------EQWA--------------HVQQFLAEEDALNK 325 (632)
T ss_pred chhhHHHhhhccCC----------CCCCccccchHHHHHH--------HHHH--------------HHHHHHHHHHHHHH
Confidence 55688888877777 2235667777774432 2221 12333555544444
Q ss_pred hhhhchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH---HHHHHHhhHHHHHH
Q 015554 100 AASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKL---ADFLKKASEDAKKL 176 (405)
Q Consensus 100 va~Ler~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKl---A~~lKqASeDAkki 176 (405)
|...|-.+|...++.+..++.|.+.-.+. + .|-|...-++.+.-| ...|+++-++=+..
T Consensus 326 ----eaq~l~~~L~~~~~e~~~~~~~~s~~~al----~----------~ele~~~l~A~l~~L~se~q~L~~~~~~r~e~ 387 (632)
T PF14817_consen 326 ----EAQALSQRLQRLLEEIERRLSGSSEREAL----A----------LELEVAGLKASLNALRSECQRLKEAAAERQEA 387 (632)
T ss_pred ----HHHHHHHHHHHHHHHHHHHccCcchhhHH----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999998888653333 2 333444455554432 33455555554444
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccc
Q 015554 177 VDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMD 241 (405)
Q Consensus 177 V~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMD 241 (405)
..+=++ =.-+|+..|.-|..-++-+.--.+.-+++ |.-+.....|+++-=.-|.+=+..-|-+
T Consensus 388 ~~~Lq~-K~q~I~~frqlv~e~QeqIr~LiK~Nsaa-kt~L~q~~~E~~~~~~~kl~P~~~~V~~ 450 (632)
T PF14817_consen 388 LRSLQA-KWQRILDFRQLVSEKQEQIRALIKGNSAA-KTQLEQSPAEAQEFVQRKLVPQFEAVAP 450 (632)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHhChHHHHHHHhcccCCcHHHHHH
Confidence 333333 24578888877766666555544443333 4477788888888766565554444433
No 92
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.81 E-value=6.5e+02 Score=29.64 Aligned_cols=100 Identities=14% Similarity=0.225 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH-------HHHHHhhHHHHHH---HHHHHHhHHHHHHHHHHHHHH
Q 015554 128 KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLA-------DFLKKASEDAKKL---VDEERAFARAEIESARAAVQR 197 (405)
Q Consensus 128 KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA-------~~lKqASeDAkki---V~eERa~A~aEIE~ArAaV~R 197 (405)
+..+.+++....-|.-+|..-..++.+-..+++++- ..+..+...-.++ -+++-..++.++...+.-+..
T Consensus 873 klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1311)
T TIGR00606 873 KLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKN 952 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666655555555443 3333333333222 222333444455555555555
Q ss_pred HHHHHHHHHHhhhhcCcccHHHHHHHHHHH
Q 015554 198 VEESLQEHEQMSRASGKQDFEELMKEVQEA 227 (405)
Q Consensus 198 ve~al~Eqe~~s~~s~kqd~e~L~~EVqEA 227 (405)
+..+..+-....+..+...++.+..++++.
T Consensus 953 ~~~~~~~i~~y~~~~~~~qL~~~e~el~~~ 982 (1311)
T TIGR00606 953 IHGYMKDIENKIQDGKDDYLKQKETELNTV 982 (1311)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555544444444444444555555555544
No 93
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=41.44 E-value=34 Score=26.15 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=15.4
Q ss_pred CcceeEeeCCCCCCCCCCcceeEEE
Q 015554 290 GSYLRIKPCSNNGPELSKCSIQWYR 314 (405)
Q Consensus 290 GS~L~i~~~~d~~~dlSkcsiQWyR 314 (405)
|+.+.+.....+.|.- .|.|||
T Consensus 1 G~~~~l~C~~~g~P~p---~v~W~k 22 (73)
T cd05852 1 GGRVIIECKPKAAPKP---KFSWSK 22 (73)
T ss_pred CCeEEEEEecceeCCC---EEEEEe
Confidence 5566666666666643 799998
No 94
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=41.17 E-value=2.7e+02 Score=25.15 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015554 172 DAKKLVDEERAFARAEIESARAAVQR 197 (405)
Q Consensus 172 DAkkiV~eERa~A~aEIE~ArAaV~R 197 (405)
++++.+.+.|..|..-|+.|++...+
T Consensus 80 e~e~~L~~A~~ea~~ii~~A~~~ae~ 105 (184)
T CHL00019 80 KARARLRQAELEADEIRVNGYSEIER 105 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 95
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=41.14 E-value=3.2e+02 Score=25.91 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=13.2
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHH
Q 015554 166 LKKASEDAKKLVDEERAFARAEIES 190 (405)
Q Consensus 166 lKqASeDAkkiV~eERa~A~aEIE~ 190 (405)
|.+|...|..|+++.|..|.++.+.
T Consensus 66 l~~a~~ea~~i~~~A~~eA~~~~~~ 90 (246)
T TIGR03321 66 NEELDQQREVLLTKAKEEAQAERQR 90 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555554433
No 96
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=39.81 E-value=89 Score=27.68 Aligned_cols=19 Identities=47% Similarity=0.607 Sum_probs=14.9
Q ss_pred HHhhhhccCCccccccHHHHHHHHHHHH
Q 015554 227 ARRIKMLHQPSKVMDMEHELRALRIQLA 254 (405)
Q Consensus 227 ARRIKmLH~PSKvMDME~El~~LR~ql~ 254 (405)
.|||||| |+.|+..|..+.
T Consensus 52 ~rrIkML---------E~aLkqER~k~~ 70 (134)
T PF08232_consen 52 KRRIKML---------EYALKQERAKYK 70 (134)
T ss_pred HHHHHHH---------HHHHHHHHHHhh
Confidence 6999998 888877776653
No 97
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=39.71 E-value=3e+02 Score=25.98 Aligned_cols=89 Identities=30% Similarity=0.438 Sum_probs=58.7
Q ss_pred hhchHHHHHHHHHHHHHhh--cccCCCC--hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 015554 102 SLEKHVLLKKLRDALESLR--GRVAGRN--KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLV 177 (405)
Q Consensus 102 ~Ler~vLLKkLR~~LesLr--GRvaGrn--KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV 177 (405)
.|.-.|=-.++.++|+.|. |+|.-+| -+||++.+.- -|..|-..+++.++|-.+|++|. +..-++
T Consensus 97 ~ltiRVP~~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D----------~~arl~~l~~~~~rl~~ll~ka~-~~~d~l 165 (262)
T PF14257_consen 97 SLTIRVPADKFDSFLDELSELGKVTSRNISSEDVTEQYVD----------LEARLKNLEAEEERLLELLEKAK-TVEDLL 165 (262)
T ss_pred EEEEEECHHHHHHHHHHHhccCceeeeeccccchHHHHHH----------HHHHHHHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 3444444456666666665 5777665 4788886554 45567777888899999999986 444444
Q ss_pred --HHHHHhHHHHHHHHHHHHHHHHHH
Q 015554 178 --DEERAFARAEIESARAAVQRVEES 201 (405)
Q Consensus 178 --~eERa~A~aEIE~ArAaV~Rve~a 201 (405)
+.+=+.-+.|||+++.-...+...
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555566788999888766554443
No 98
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=39.46 E-value=15 Score=34.22 Aligned_cols=18 Identities=44% Similarity=0.931 Sum_probs=16.0
Q ss_pred ccCCCChhhHHHHHHHHH
Q 015554 122 RVAGRNKDDVEEAIAMVE 139 (405)
Q Consensus 122 RvaGrnKddveeaismVe 139 (405)
||.|+++||.-++|+|+-
T Consensus 129 RVtgKkrDDLQ~viallk 146 (160)
T PF04461_consen 129 RVTGKKRDDLQEVIALLK 146 (160)
T ss_dssp EEEES-HHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHH
Confidence 999999999999999974
No 99
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=39.19 E-value=2.9e+02 Score=24.78 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=22.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015554 148 REGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRV 198 (405)
Q Consensus 148 rE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rv 198 (405)
|+......-.+..+.-.-..+.-+++++.+.+.|..|..-++.|+....+.
T Consensus 50 R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~ 100 (175)
T PRK14472 50 REKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKL 100 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444444445555555555544444433
No 100
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=39.13 E-value=2.9e+02 Score=24.85 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=20.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHH
Q 015554 148 REGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIE 189 (405)
Q Consensus 148 rE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE 189 (405)
++||.+|.++- +.+-.-...+++.++..++.-+..|.....
T Consensus 46 k~Ge~~e~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d 86 (132)
T PF05597_consen 46 KEGEKLEKKTR-KKAEEQVEEARDQVKSRVDDVKERATGQWD 86 (132)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56776666542 122223333445555666666655544443
No 101
>PRK10807 paraquat-inducible protein B; Provisional
Probab=38.81 E-value=1.6e+02 Score=31.69 Aligned_cols=109 Identities=14% Similarity=0.252 Sum_probs=64.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcccchhHhHHHhhhchhHHHhhhHHHH--hHH----hhhhchHHHHHHHHHHHHHhhc
Q 015554 48 DPKVLSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAK--LRE----AASLEKHVLLKKLRDALESLRG 121 (405)
Q Consensus 48 d~~~~slKEvVakEta~L~~q~kRLSVRDLA~KFEKgl~~AakLs~EaK--~re----va~Ler~vLLKkLR~~LesLrG 121 (405)
-|..||-=+-+.+-..+++++-++|.+.++....+.-|..+.++..+.. +.. +++=+...|-..|+..|.+|..
T Consensus 408 IPt~ps~l~~l~~~~~~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~~l~~ 487 (547)
T PRK10807 408 IPTVSGGLAQIQQKLMEALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLRELNR 487 (547)
T ss_pred eecCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 3445555566677778899999999999999887666654444443311 000 0122233444666666776666
Q ss_pred ccCC------------CChhhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 015554 122 RVAG------------RNKDDVEEAIAMVEALAVQLTQREGELIQEK 156 (405)
Q Consensus 122 RvaG------------rnKddveeaismVeaLavqltqrE~ELiQeK 156 (405)
-++| ++-++++.+..=+..|+-+|.++-.-||.-|
T Consensus 488 ~l~~~~~~s~~~~~l~~tl~~l~~~~r~lr~l~~~L~~~P~aLi~g~ 534 (547)
T PRK10807 488 SMQGFQPGSPAYNKMVADMQRLDQVLRELQPVLKTLNEKSNALVFEA 534 (547)
T ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcCC
Confidence 6665 3334455555555566666666655555543
No 102
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=38.75 E-value=3.3e+02 Score=26.73 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=12.3
Q ss_pred HHHHHhcccchhHhHHHhhhchh
Q 015554 64 QLLEQQKRLSVRDLANKFEKGLA 86 (405)
Q Consensus 64 ~L~~q~kRLSVRDLA~KFEKgl~ 86 (405)
++.-++.-|.=|+++.+-.+-++
T Consensus 65 ~~~~~~e~L~Sr~~~~~v~~~l~ 87 (362)
T TIGR01010 65 DTYTVQEYMRSRDMLAALEKELP 87 (362)
T ss_pred cHHHHHHHHhhHHHHHHHHhcCC
Confidence 34444555555666665555444
No 103
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=38.64 E-value=1.7e+02 Score=32.80 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 015554 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKR 272 (405)
Q Consensus 241 DME~El~~LR~ql~eKs~~~v~L~KEL~~~kr 272 (405)
-|+.+|..|+..|.|+....-+|.++|+..++
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999987763
No 104
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=37.66 E-value=2.6e+02 Score=23.78 Aligned_cols=31 Identities=26% Similarity=0.193 Sum_probs=19.9
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 015554 164 DFLKKASEDAKKLVDEERAFARAEIESARAA 194 (405)
Q Consensus 164 ~~lKqASeDAkkiV~eERa~A~aEIE~ArAa 194 (405)
.-|.+|...|+.|+++.|..|..+.+..++.
T Consensus 64 ~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~ 94 (140)
T PRK07353 64 QQLASARKQAQAVIAEAEAEADKLAAEALAE 94 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777666555443
No 105
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=37.37 E-value=4.6e+02 Score=27.20 Aligned_cols=97 Identities=25% Similarity=0.327 Sum_probs=56.1
Q ss_pred hchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH---HhhHHHHHHHHH
Q 015554 103 LEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLK---KASEDAKKLVDE 179 (405)
Q Consensus 103 Ler~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lK---qASeDAkkiV~e 179 (405)
||-..+.++.-.+-++|+-| |-+ .+|++-+++ --+|.+--.++-+-+++.++++.-++ +..+|+..+.++
T Consensus 2 lD~k~ir~n~~~v~~~l~~R--~~~-~~vd~i~~l----d~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~ 74 (425)
T PRK05431 2 LDIKLIRENPEAVKEALAKR--GFP-LDVDELLEL----DEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAE 74 (425)
T ss_pred CCHHHHHhCHHHHHHHHHhc--CCc-ccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHH
Confidence 45555556666777888888 433 456655553 44444444444444555555555554 344466666665
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015554 180 ERAFARAEIESARAAVQRVEESLQEHEQ 207 (405)
Q Consensus 180 ERa~A~aEIE~ArAaV~Rve~al~Eqe~ 207 (405)
-+. ...+|....+....+++.+.+.-.
T Consensus 75 ~~~-l~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 75 VKE-LKEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 553 355677777777777777766443
No 106
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=37.18 E-value=5.2e+02 Score=27.17 Aligned_cols=76 Identities=25% Similarity=0.308 Sum_probs=51.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHH
Q 015554 174 KKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQL 253 (405)
Q Consensus 174 kkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql 253 (405)
+.-|++||..=.+.++.+++-|..+++++.... +...++||+.-|+ .=+.+|+.-|
T Consensus 366 ~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~---------------~~~~~~~~~~~l~---------~a~~~l~~~l 421 (582)
T PF09731_consen 366 KEKVEQERNGRLAKLAELNSRLKALEEALDARS---------------EAEDENRRAQQLW---------LAVDALKSAL 421 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 566899999888999999999999988877643 3345566666554 2355666666
Q ss_pred HHHhHHH-HHHHHHHHHhhhh
Q 015554 254 AEKSKCS-LLLRKELAMSKRI 273 (405)
Q Consensus 254 ~eKs~~~-v~L~KEL~~~kr~ 273 (405)
..-.... .-|..||...+..
T Consensus 422 ~~~~~~~~~p~~~el~~l~~~ 442 (582)
T PF09731_consen 422 DSGNAGSPRPFEDELRALKEL 442 (582)
T ss_pred HcCCCcCCCCHHHHHHHHHHh
Confidence 5544433 5667777666655
No 107
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=37.10 E-value=2.3e+02 Score=23.16 Aligned_cols=97 Identities=30% Similarity=0.399 Sum_probs=48.5
Q ss_pred hchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 015554 103 LEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERA 182 (405)
Q Consensus 103 Ler~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa 182 (405)
|+-..+..+.-.+-++|+.|- ...++|++.+.+-+-.-- +.+.=.+|-.++-++.|--.-++.+.+|+..+..+-+.
T Consensus 2 LDik~ir~n~e~v~~~l~~R~--~~~~~vd~i~~ld~~~r~-l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~ 78 (108)
T PF02403_consen 2 LDIKLIRENPEEVRENLKKRG--GDEEDVDEIIELDQERRE-LQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKE 78 (108)
T ss_dssp -SHHHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHH
T ss_pred CCHHHHHhCHHHHHHHHHHcC--CCHhhHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 444445555555566666554 467788888877554422 22222233334444433333334444566666655443
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 015554 183 FARAEIESARAAVQRVEESLQ 203 (405)
Q Consensus 183 ~A~aEIE~ArAaV~Rve~al~ 203 (405)
-..+|....+.+..+++.+.
T Consensus 79 -lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 79 -LKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 23455555555555544443
No 108
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=36.46 E-value=5.5e+02 Score=27.30 Aligned_cols=118 Identities=25% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcccC------CCChhhHHHHHHHHHHHHHHhhhhhhhh-------HHHHHHHHHHHHHHHHhhHHHHH
Q 015554 109 LKKLRDALESLRGRVA------GRNKDDVEEAIAMVEALAVQLTQREGEL-------IQEKAEVKKLADFLKKASEDAKK 175 (405)
Q Consensus 109 LKkLR~~LesLrGRva------GrnKddveeaismVeaLavqltqrE~EL-------iQeK~EVkKlA~~lKqASeDAkk 175 (405)
+..|++..++|+.-+. .+.++....+-+.|.-|..+|++=-.+| -.-|.....|..-|+|++.+| .
T Consensus 304 ~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Ea-e 382 (522)
T PF05701_consen 304 ASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEA-E 382 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHH-H
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH
Q 015554 176 LVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR 228 (405)
Q Consensus 176 iV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEAR 228 (405)
-...+...++.|+..+++-+.-....+..-+.-.++..+ +++..+.--.-|.
T Consensus 383 ~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~k-e~eaaKasEa~Al 434 (522)
T PF05701_consen 383 EAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALK-EAEAAKASEALAL 434 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
No 109
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=36.24 E-value=2.2e+02 Score=25.35 Aligned_cols=40 Identities=35% Similarity=0.474 Sum_probs=26.3
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHH
Q 015554 166 LKKASEDAKKLVDEERAFARAEIESARA-AVQRVEESLQEH 205 (405)
Q Consensus 166 lKqASeDAkkiV~eERa~A~aEIE~ArA-aV~Rve~al~Eq 205 (405)
..+|-++++++|.+.|..|+-.|+.|-. |....++.|++.
T Consensus 23 IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~ 63 (108)
T COG2811 23 IEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEA 63 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888887777643 334444444443
No 110
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.74 E-value=3.2e+02 Score=29.76 Aligned_cols=112 Identities=30% Similarity=0.291 Sum_probs=62.4
Q ss_pred hhhhhhhhHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH-----------HHHHHHHHHHHHHHhhhhc
Q 015554 145 LTQREGELIQEKAEVKKL-ADFLKKASEDAKKLVDEERAFARAEIESARA-----------AVQRVEESLQEHEQMSRAS 212 (405)
Q Consensus 145 ltqrE~ELiQeK~EVkKl-A~~lKqASeDAkkiV~eERa~A~aEIE~ArA-----------aV~Rve~al~Eqe~~s~~s 212 (405)
..|+-.||---|.|-.|- .+-+.-|++|--.+ .-+-..|+||.|+-+| ||--|....+|.--+.+++
T Consensus 11 ~nqkrk~~~~a~ee~~~rq~a~~qa~q~dl~~l-rtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~ 89 (542)
T KOG0993|consen 11 FNQKRKELYLAKEEDLKRQNAVLQAAQDDLGHL-RTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQAS 89 (542)
T ss_pred HHHhhhhcccchhhHHHhccchhhhhcchHHHH-HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHH
Confidence 344444444444444333 33455566666444 4456778888887654 3333333333322222222
Q ss_pred C----------------------cccHHHHHHHHHHHHhhhhccCC-------------------ccccccHHHHHHHHH
Q 015554 213 G----------------------KQDFEELMKEVQEARRIKMLHQP-------------------SKVMDMEHELRALRI 251 (405)
Q Consensus 213 ~----------------------kqd~e~L~~EVqEARRIKmLH~P-------------------SKvMDME~El~~LR~ 251 (405)
- .|+-+.+.+||..+++.----+| +-||-||.||..|..
T Consensus 90 ~k~~~~~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~ 169 (542)
T KOG0993|consen 90 QKSPNPTYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKK 169 (542)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHH
Confidence 1 24667778888777765332222 348899999999987
Q ss_pred HHHHHh
Q 015554 252 QLAEKS 257 (405)
Q Consensus 252 ql~eKs 257 (405)
-+++--
T Consensus 170 kl~~aE 175 (542)
T KOG0993|consen 170 KLAKAE 175 (542)
T ss_pred HHHhHH
Confidence 776543
No 111
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=35.64 E-value=3.8e+02 Score=25.25 Aligned_cols=92 Identities=26% Similarity=0.412 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hHH
Q 015554 109 LKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERA---FAR 185 (405)
Q Consensus 109 LKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa---~A~ 185 (405)
|-+++|.|.-|..=+..+|-.+.++ |.-+|+.-+.+|......+..|..-+..++...++-+..|+. .|+
T Consensus 98 l~k~~~~l~~L~~L~~dknL~eRee-------L~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~ 170 (194)
T PF15619_consen 98 LLKTKDELKHLKKLSEDKNLAEREE-------LQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQ 170 (194)
T ss_pred HHHHHHHHHHHHHHHHcCCchhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4478888888888888888887644 567777778888888888888999999999888888777764 577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015554 186 AEIESARAAVQRVEESLQEHEQ 207 (405)
Q Consensus 186 aEIE~ArAaV~Rve~al~Eqe~ 207 (405)
.++..+.-=|.++..-|+|.++
T Consensus 171 ~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 171 EEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888888888888775
No 112
>PLN02678 seryl-tRNA synthetase
Probab=35.63 E-value=5.4e+02 Score=27.35 Aligned_cols=90 Identities=29% Similarity=0.270 Sum_probs=47.8
Q ss_pred HHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 015554 114 DALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARA 193 (405)
Q Consensus 114 ~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArA 193 (405)
.+-++|+-|- -+.+.|++.+++ +.--.++.++=.+|-.++.++.|--.-+|...+++..++++-+. -..||....+
T Consensus 17 ~v~~~l~~R~--~~~~~id~il~l-d~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~-Lk~ei~~le~ 92 (448)
T PLN02678 17 LIRESQRRRF--ASVELVDEVIAL-DKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKE-LKKEITEKEA 92 (448)
T ss_pred HHHHHHHhhC--CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHHHHHHHH
Confidence 5666666663 233335555554 22233333333333334444333333334555666667665554 3467888888
Q ss_pred HHHHHHHHHHHHHH
Q 015554 194 AVQRVEESLQEHEQ 207 (405)
Q Consensus 194 aV~Rve~al~Eqe~ 207 (405)
.+..+++.+.+.-.
T Consensus 93 ~~~~~~~~l~~~~~ 106 (448)
T PLN02678 93 EVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877776543
No 113
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=34.67 E-value=71 Score=24.55 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=28.8
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccccccccccccCCCCcccce
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRI 343 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsGAtk~~YAPEP~DVGr~ 343 (405)
.|+...+....+.. .+.-.+.|||..+++....++..-....+ +.|..-+|+
T Consensus 5 ~G~~v~L~C~~~~~--~~~~~v~W~k~~~~~~~~~i~~~~~~~~~-~~~~~~~r~ 56 (105)
T cd00099 5 EGESVTLSCTYSGS--FSSYYIFWYRQKPGKGPELLIYISSNGSQ-YAGGVKGRF 56 (105)
T ss_pred CCCCEEEEEEEeCC--cCcceEEEEEECCCCCCEEEEEEeCCCCc-cCccCCCcE
Confidence 45555555443433 34558999999885555555554333333 444455654
No 114
>PRK02224 chromosome segregation protein; Provisional
Probab=34.45 E-value=6.5e+02 Score=27.56 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=22.9
Q ss_pred CccccccHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 015554 236 PSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSK 271 (405)
Q Consensus 236 PSKvMDME~El~~LR~ql~eKs~~~v~L~KEL~~~k 271 (405)
|+++-+++.++..|+..+.+--.....+++.|...+
T Consensus 411 e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 411 EDFLEELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677777777666666555555666665444
No 115
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=34.28 E-value=3.4e+02 Score=24.23 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=21.3
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 015554 164 DFLKKASEDAKKLVDEERAFARAEIESARAA 194 (405)
Q Consensus 164 ~~lKqASeDAkkiV~eERa~A~aEIE~ArAa 194 (405)
.-|.+|...|..|+++.+..|..+++.+++.
T Consensus 69 ~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~ 99 (167)
T PRK14475 69 AEREEAERQAAAMLAAAKADARRMEAEAKEK 99 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777777777666553
No 116
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=33.73 E-value=4.8e+02 Score=25.82 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhcccchh
Q 015554 59 ARETAQLLEQQKRLSVR 75 (405)
Q Consensus 59 akEta~L~~q~kRLSVR 75 (405)
-+.--.+...+-||.-+
T Consensus 120 m~~q~~~vK~~aRl~aK 136 (325)
T PF08317_consen 120 MDNQFQLVKTYARLEAK 136 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455566666666543
No 117
>PRK09039 hypothetical protein; Validated
Probab=33.67 E-value=5.2e+02 Score=26.14 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHH
Q 015554 183 FARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEA 227 (405)
Q Consensus 183 ~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEA 227 (405)
..+.||++-|+-..+++.+|...+...... +..++.|..+++.|
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~-~~~i~~L~~~L~~a 184 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRDRES-QAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 467899999999999999999888776322 23677777777766
No 118
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=32.83 E-value=3.7e+02 Score=24.21 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=24.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015554 147 QREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRV 198 (405)
Q Consensus 147 qrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rv 198 (405)
+|+.....+-.+..+.-.-....-+++++...+.|..|..-++.|+....+.
T Consensus 49 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~ 100 (173)
T PRK13453 49 KRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQ 100 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333333333333334444555555555555555555555554443
No 119
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=32.73 E-value=8.5e+02 Score=28.35 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=25.3
Q ss_pred ccccHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 015554 239 VMDMEHELRALRIQLAEKSKCSLLLRKELAMSKR 272 (405)
Q Consensus 239 vMDME~El~~LR~ql~eKs~~~v~L~KEL~~~kr 272 (405)
.-+++.++..++..+.........++..+.....
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 495 (1163)
T COG1196 462 LKELERELAELQEELQRLEKELSSLEARLDRLEA 495 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888887777777654443
No 120
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=32.52 E-value=37 Score=28.15 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=13.3
Q ss_pred CCChhhHHHHHHHHH-----------HHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 015554 125 GRNKDDVEEAIAMVE-----------ALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARA 193 (405)
Q Consensus 125 GrnKddveeaismVe-----------aLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArA 193 (405)
|-|+++|..-|.-|. .|--++..-..+|-+-+.....|-+.|-+|-.-|.+++......|..-|+.|++
T Consensus 17 GYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~eA~~i~~~A~~ 96 (131)
T PF05103_consen 17 GYDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEEEAEEIIEEAQK 96 (131)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------------------------------
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 677777776655432 222333333344444444555555666666666666666666666666666665
Q ss_pred HHHH
Q 015554 194 AVQR 197 (405)
Q Consensus 194 aV~R 197 (405)
-..+
T Consensus 97 ~a~~ 100 (131)
T PF05103_consen 97 EAEE 100 (131)
T ss_dssp ----
T ss_pred HHHH
Confidence 5544
No 121
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=32.47 E-value=3.5e+02 Score=23.83 Aligned_cols=10 Identities=20% Similarity=0.521 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 015554 172 DAKKLVDEER 181 (405)
Q Consensus 172 DAkkiV~eER 181 (405)
.|..|+++.|
T Consensus 75 ea~~ii~~A~ 84 (164)
T PRK14471 75 ERDAILKEAR 84 (164)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 122
>PTZ00464 SNF-7-like protein; Provisional
Probab=32.32 E-value=4.6e+02 Score=25.15 Aligned_cols=99 Identities=12% Similarity=0.198 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHhHHH----------
Q 015554 128 KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASE-----------DAKKLVDEERAFARA---------- 186 (405)
Q Consensus 128 KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASe-----------DAkkiV~eERa~A~a---------- 186 (405)
+....++|..++-=.-+|.++...+-+|.+..++.+.-.+.++. =.||+.+..+.....
T Consensus 13 ~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~ 92 (211)
T PTZ00464 13 KPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQF 92 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666655555555555555444444444333221111110 136666665444332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc----CcccHHHHHHHHHHH
Q 015554 187 EIESARAAVQRVEESLQEHEQMSRAS----GKQDFEELMKEVQEA 227 (405)
Q Consensus 187 EIE~ArAaV~Rve~al~Eqe~~s~~s----~kqd~e~L~~EVqEA 227 (405)
-||+|+..+. |-.|++.--...... .-.++|.|+.|++|.
T Consensus 93 ~ie~a~~~~~-vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~ 136 (211)
T PTZ00464 93 TTESVKDTKV-QVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADL 136 (211)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3444444322 223333333333332 334888888888885
No 123
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=32.29 E-value=62 Score=28.73 Aligned_cols=72 Identities=31% Similarity=0.400 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHh-hhhcCcccHHHHHHHHHHHHhhhhcc--CCccccccHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015554 192 RAAVQRVEESLQEHEQM-SRASGKQDFEELMKEVQEARRIKMLH--QPSKVMDMEHELRALRIQLAEKSKCSLLLRKELA 268 (405)
Q Consensus 192 rAaV~Rve~al~Eqe~~-s~~s~kqd~e~L~~EVqEARRIKmLH--~PSKvMDME~El~~LR~ql~eKs~~~v~L~KEL~ 268 (405)
+++|+++=..|-++... ....|||-+=-.... -+. .|....+|+.||..||.++.+-...+-.|+.||.
T Consensus 32 K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~--------~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 32 KTAVQKALDSLVEEGKIVEKEYGKQKIYFANQD--------ELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHhCCCeeeeeecceEEEeeCcc--------ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777766666555444 566677611000000 011 2344677888888899988888888888888886
Q ss_pred Hhh
Q 015554 269 MSK 271 (405)
Q Consensus 269 ~~k 271 (405)
-..
T Consensus 104 ~L~ 106 (169)
T PF07106_consen 104 SLS 106 (169)
T ss_pred HHh
Confidence 444
No 124
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=32.27 E-value=2.9e+02 Score=22.74 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=9.6
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHH
Q 015554 167 KKASEDAKKLVDEERAFARAEIES 190 (405)
Q Consensus 167 KqASeDAkkiV~eERa~A~aEIE~ 190 (405)
+.|-.+|..|+++.+..|..+++.
T Consensus 61 ~~a~~ea~~i~~~a~~~a~~~~~~ 84 (132)
T PF00430_consen 61 AEAREEAQEIIEEAKEEAEKEKEE 84 (132)
T ss_dssp HHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433333
No 125
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=31.88 E-value=2.7e+02 Score=22.39 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=11.9
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHH
Q 015554 166 LKKASEDAKKLVDEERAFARAEIESA 191 (405)
Q Consensus 166 lKqASeDAkkiV~eERa~A~aEIE~A 191 (405)
|+.|...|..|+++.+..|...++.+
T Consensus 15 l~~A~~ea~~Ii~~A~~~A~~~~~~a 40 (85)
T TIGR02926 15 IEEAEEERKQRIAEAREEARELLEEA 40 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 126
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=31.78 E-value=7.4e+02 Score=27.40 Aligned_cols=52 Identities=29% Similarity=0.397 Sum_probs=21.8
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 015554 141 LAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARA 193 (405)
Q Consensus 141 LavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArA 193 (405)
|--++.+-+.+|.+.+.+..+|-.-.+...... .-+.+|+..-..+.+.+++
T Consensus 169 l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~-e~l~~E~~~L~~q~~e~~~ 220 (546)
T PF07888_consen 169 LREEVERLEAELEQEEEEMEQLKQQQKELTESS-EELKEERESLKEQLAEARQ 220 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555544443333222 2233444444444444443
No 127
>PHA02562 46 endonuclease subunit; Provisional
Probab=31.75 E-value=5.8e+02 Score=26.12 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015554 127 NKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHE 206 (405)
Q Consensus 127 nKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe 206 (405)
+.++++.-+.+++..-.++.+...++.+...++.++=+-+..-.++... ..+++...+++|++....+..++.-|++-+
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~-~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~ 385 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLIT-LVDKAKKVKAAIEELQAEFVDNAEELAKLQ 385 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Q ss_pred HhhhhcCcccHHHHHHHHHHHHhhhhc
Q 015554 207 QMSRASGKQDFEELMKEVQEARRIKML 233 (405)
Q Consensus 207 ~~s~~s~kqd~e~L~~EVqEARRIKmL 233 (405)
........ +..++.++.....-|..+
T Consensus 386 ~~l~~~~~-~~~~~~ke~~~~~~i~~~ 411 (562)
T PHA02562 386 DELDKIVK-TKSELVKEKYHRGIVTDL 411 (562)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHH
No 128
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=31.62 E-value=7.5e+02 Score=27.38 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=16.7
Q ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015554 242 MEHELRALRIQLAEKSKCSLLLRKELA 268 (405)
Q Consensus 242 ME~El~~LR~ql~eKs~~~v~L~KEL~ 268 (405)
+..+|+.++.++...-...+.|++||.
T Consensus 288 LkeqLr~~qe~lqaSqq~~~~L~~EL~ 314 (546)
T PF07888_consen 288 LKEQLRSAQEQLQASQQEAELLRKELS 314 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666664
No 129
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=31.31 E-value=3.2e+02 Score=28.23 Aligned_cols=74 Identities=23% Similarity=0.345 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH
Q 015554 151 ELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR 228 (405)
Q Consensus 151 ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEAR 228 (405)
+|.+|=.++.......++-.|+--++-+. ....|..-+--...+.+.|+.-+..+...+.+.+++|+++++++|
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~lQ~~----C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSKLQDK----CSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHH
Confidence 44444445555555555555554443332 223344444434444444444444344444555666666666554
No 130
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=31.21 E-value=4.2e+02 Score=24.34 Aligned_cols=33 Identities=12% Similarity=0.260 Sum_probs=20.7
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015554 165 FLKKASEDAKKLVDEERAFARAEIESARAAVQR 197 (405)
Q Consensus 165 ~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~R 197 (405)
-|++|...|..|+++.+..|...++.|+.-...
T Consensus 64 ~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ 96 (154)
T PRK06568 64 QIKKLETLRSQMIEESNEVTKKIIQEKTKEIEE 96 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666677777776666666666554443
No 131
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=30.89 E-value=4.2e+02 Score=24.22 Aligned_cols=32 Identities=34% Similarity=0.415 Sum_probs=17.8
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015554 164 DFLKKASEDAKKLVDEERAFARAEIESARAAV 195 (405)
Q Consensus 164 ~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV 195 (405)
.-|.+|...|+.|+++.|+.|..+.+.+++..
T Consensus 90 ~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A 121 (181)
T PRK13454 90 KALADARAEAQRIVAETRAEIQAELDVAIAKA 121 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666655555544433
No 132
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=30.86 E-value=4.5e+02 Score=24.55 Aligned_cols=104 Identities=19% Similarity=0.304 Sum_probs=60.5
Q ss_pred HhhhhchHHHHHHHHHHHHHhhccc-CCCC-----------hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-H
Q 015554 99 EAASLEKHVLLKKLRDALESLRGRV-AGRN-----------KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLAD-F 165 (405)
Q Consensus 99 eva~Ler~vLLKkLR~~LesLrGRv-aGrn-----------KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~-~ 165 (405)
|+.+=+|..+-..+++.|...-... .|=. .+++.+|+..+.+-.- +..+.++|-..-|. -
T Consensus 134 eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q-------~~~~~~~eae~~a~~~ 206 (266)
T cd03404 134 DVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQ-------DRERLINEAEAYANEV 206 (266)
T ss_pred HHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 3333346777776666664422211 1321 4457777665432221 12233333333333 3
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015554 166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMS 209 (405)
Q Consensus 166 lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s 209 (405)
+.+|-.+|.++.-+..+.+.+.+..|++-..+....++.-.++.
T Consensus 207 ~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~~~ 250 (266)
T cd03404 207 VPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEYKKAP 250 (266)
T ss_pred HHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCh
Confidence 46788899999999999999999999888888776666555443
No 133
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=30.85 E-value=85 Score=29.64 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=40.4
Q ss_pred eEeecCCeEEEEeecCCCCCCCCchhHHHHHhhcCCceeeEeecCC------CCCCcccccccc
Q 015554 346 AEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVRAPPQ------HPPPQHHFQDFT 403 (405)
Q Consensus 346 adI~~~g~k~~~~T~GPidpaaGL~~yVEaL~rk~~tEFNVvi~Q~------~~~~s~hv~~~~ 403 (405)
++|.+.+-++-| |..|-| +-|..|.|.|-+ .+.--=|+|--- +.++-|||.|+.
T Consensus 10 veIsy~~MrFLI-ThnPtn--aTln~fieELkK-ygvttvVRVCe~TYdt~~lek~GI~Vldw~ 69 (173)
T KOG2836|consen 10 VEISYKNMRFLI-THNPTN--ATLNKFIEELKK-YGVTTVVRVCEPTYDTTPLEKEGITVLDWP 69 (173)
T ss_pred eeeeccceEEEE-ecCCCc--hhHHHHHHHHHh-cCCeEEEEecccccCCchhhhcCceEeecc
Confidence 678888777665 999998 889999999854 444444555443 788899998863
No 134
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=30.63 E-value=51 Score=27.32 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=20.3
Q ss_pred cCcceeEeeCCCCCCCCC-CcceeEEEecCCCCccccc
Q 015554 289 LGSYLRIKPCSNNGPELS-KCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlS-kcsiQWyRv~~~gsk~E~I 325 (405)
.|+...|...-...+.++ +-.|+||+....|+..+.|
T Consensus 12 ~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v 49 (115)
T cd05880 12 NGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESV 49 (115)
T ss_pred cCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEE
Confidence 355555543322223333 4579999987666655444
No 135
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=30.47 E-value=6.5e+02 Score=26.28 Aligned_cols=26 Identities=27% Similarity=0.144 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHh
Q 015554 245 ELRALRIQLAEKSKCSLLLRKELAMS 270 (405)
Q Consensus 245 El~~LR~ql~eKs~~~v~L~KEL~~~ 270 (405)
+++.|..++.+-....-.|+++|+..
T Consensus 146 ~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 146 EDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444566666543
No 136
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=30.44 E-value=3e+02 Score=22.62 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=16.9
Q ss_pred HHHHHHHhcccchhHhHHHhhhc
Q 015554 62 TAQLLEQQKRLSVRDLANKFEKG 84 (405)
Q Consensus 62 ta~L~~q~kRLSVRDLA~KFEKg 84 (405)
...|...-++-||+-+-...=+|
T Consensus 10 a~~L~~~G~~pT~~~Vr~~lG~G 32 (120)
T PF11740_consen 10 ADELLAAGKKPTVRAVRERLGGG 32 (120)
T ss_pred HHHHHHcCCCCCHHHHHHHHCCC
Confidence 56677777888888877777644
No 137
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.39 E-value=1.1e+03 Score=28.87 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=16.9
Q ss_pred hchhHHHhhhHH-HH-hHHhhhhchHHH
Q 015554 83 KGLAAAAKLSEE-AK-LREAASLEKHVL 108 (405)
Q Consensus 83 Kgl~~AakLs~E-aK-~reva~Ler~vL 108 (405)
+||.-|+.++-- .+ || |--|++..+
T Consensus 722 d~LeQAtRiaygk~rr~R-VvTL~G~lI 748 (1293)
T KOG0996|consen 722 DNLEQATRIAYGKDRRWR-VVTLDGSLI 748 (1293)
T ss_pred cCHHHHHHHhhcCCCceE-EEEecceee
Confidence 456667777754 33 88 888888755
No 138
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.30 E-value=78 Score=34.05 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=11.2
Q ss_pred ccHHHHHHHHHHH
Q 015554 241 DMEHELRALRIQL 253 (405)
Q Consensus 241 DME~El~~LR~ql 253 (405)
+||.|++.|+.|+
T Consensus 108 eLEaE~~~Lk~Ql 120 (475)
T PRK13729 108 KLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888888887
No 139
>PRK06328 type III secretion system protein; Validated
Probab=30.26 E-value=4.9e+02 Score=24.79 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=26.1
Q ss_pred ccceeeeEee-cCCeEEEEeecCCCCCCCCchhHHHHHhh
Q 015554 340 VGRILQAEIT-YNGQQITLTTTGAVDPAPGLGSYVEALVR 378 (405)
Q Consensus 340 VGr~LqadI~-~~g~k~~~~T~GPidpaaGL~~yVEaL~r 378 (405)
.+|.+.+|-. ..|.-..=+-.|=|| ++|....+.|-+
T Consensus 161 ~~~~I~~D~~L~~GgCiIET~~G~VD--asle~ql~~l~~ 198 (223)
T PRK06328 161 DSLIISPKADVTPGGCIIETEAGIIN--AQLDVQLAALEK 198 (223)
T ss_pred CceEEEeCCCCCCCCeEEEeCCceEE--ecHHHHHHHHHH
Confidence 4677777764 556666666778888 888888777654
No 140
>PRK12704 phosphodiesterase; Provisional
Probab=30.00 E-value=7.2e+02 Score=26.71 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=13.6
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015554 167 KKASEDAKKLVDEERAFARAEIESARAAV 195 (405)
Q Consensus 167 KqASeDAkkiV~eERa~A~aEIE~ArAaV 195 (405)
++|--+|+....+.+..|..|+...|.-+
T Consensus 45 keA~~eAke~~ke~~leaeeE~~~~R~El 73 (520)
T PRK12704 45 EEAKKEAEAIKKEALLEAKEEIHKLRNEF 73 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555444444444444444444333
No 141
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=29.99 E-value=7.5e+02 Score=26.87 Aligned_cols=145 Identities=19% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015554 131 VEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSR 210 (405)
Q Consensus 131 veeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~ 210 (405)
.+.+....+.|.-|+.+-..+|-+.-.++...-.--+-.+.+...+.++.-+....++..||+.....+..++.-+....
T Consensus 189 ~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~ 268 (754)
T TIGR01005 189 SESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQ 268 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hcCc---------------ccHHHHHHHHHHHHh------hhhccCCccccccHHHHHHHHHHHHH-HhHHHHHHHHHHH
Q 015554 211 ASGK---------------QDFEELMKEVQEARR------IKMLHQPSKVMDMEHELRALRIQLAE-KSKCSLLLRKELA 268 (405)
Q Consensus 211 ~s~k---------------qd~e~L~~EVqEARR------IKmLH~PSKvMDME~El~~LR~ql~e-Ks~~~v~L~KEL~ 268 (405)
..+. .-+.+|+.+..+.++ -+.-..=-.|.+++.+|..|+.+|.+ .....-.++.+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~ 348 (754)
T TIGR01005 269 NGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQAD 348 (754)
T ss_pred cCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhhhc
Q 015554 269 MSKRIEE 275 (405)
Q Consensus 269 ~~kr~~e 275 (405)
..+..++
T Consensus 349 ~a~~~~~ 355 (754)
T TIGR01005 349 AAQARES 355 (754)
T ss_pred HHHHHHH
No 142
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=29.97 E-value=52 Score=36.01 Aligned_cols=41 Identities=29% Similarity=0.467 Sum_probs=32.5
Q ss_pred cccccCCCCcccceeeeEee-cCCeE-------EEEeecCCCCCCCCchh
Q 015554 330 KSVYAPEPFDVGRILQAEIT-YNGQQ-------ITLTTTGAVDPAPGLGS 371 (405)
Q Consensus 330 k~~YAPEP~DVGr~LqadI~-~~g~k-------~~~~T~GPidpaaGL~~ 371 (405)
-..|.|-+=|||.+|..+.+ .|+.. .++.| +|+-|+||.-.
T Consensus 180 ~~~y~p~~~d~g~~lk~~~~~~~~~~~~~~~~~~~~~t-~~v~~~p~p~~ 228 (606)
T PLN03144 180 SKTYTPTADDVGHVLKFECVVVDAETGLPVGHPQSILT-SRVIPAPSPTP 228 (606)
T ss_pred CccccCChhhCCceEEEEEEEcccccCCCCccceeecc-cceecCCCCCC
Confidence 45899999999999999987 45544 45555 89999998765
No 143
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=29.67 E-value=3.7e+02 Score=23.21 Aligned_cols=101 Identities=24% Similarity=0.304 Sum_probs=65.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015554 128 KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQ 207 (405)
Q Consensus 128 KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~ 207 (405)
..+++..+.=.+-||-+....+.+|...|.++...-..++..-.-=..... +. ..-..-=+-.+...+++.+..+.+.
T Consensus 33 ~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~-~~-~~l~~~~s~~~l~~~L~~~~~e~ee 110 (150)
T PF07200_consen 33 QQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQ-QQ-DELSSNYSPDALLARLQAAASEAEE 110 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHccCCHHHHHHHHHHHHHHHHH
Confidence 355666677778888888888999999999998877777664433322222 11 1113333556778888988888888
Q ss_pred hhhhc------CcccHHHHHHHHHHHHhh
Q 015554 208 MSRAS------GKQDFEELMKEVQEARRI 230 (405)
Q Consensus 208 ~s~~s------~kqd~e~L~~EVqEARRI 230 (405)
.|..- |+-|++...++-.+.|.+
T Consensus 111 eSe~lae~fl~g~~d~~~Fl~~f~~~R~~ 139 (150)
T PF07200_consen 111 ESEELAEEFLDGEIDVDDFLKQFKEKRKL 139 (150)
T ss_dssp HHHHHC-S-SSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 77654 334888888888887754
No 144
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=29.61 E-value=5.3e+02 Score=25.03 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=11.1
Q ss_pred HHHHhhhhhhhhHHHHHHHH
Q 015554 141 LAVQLTQREGELIQEKAEVK 160 (405)
Q Consensus 141 LavqltqrE~ELiQeK~EVk 160 (405)
+..+||..|.++..+++...
T Consensus 195 ~d~~L~~~ek~~~~~~~k~e 214 (297)
T PF02841_consen 195 ADQQLTEKEKEIEEEQAKAE 214 (297)
T ss_dssp H-TTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44677877777765554443
No 145
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=28.79 E-value=1.4e+02 Score=23.93 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=21.7
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISG 327 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsG 327 (405)
..|+...|.....+ +.-.+.|||..+...-.-|+..
T Consensus 11 ~~G~~v~l~C~~~~----~~~~v~Wykq~~g~~~~~l~~~ 46 (110)
T cd05899 11 GRGQSVTLRCSQTS----GHDNMYWYRQDPGKGLQLLFYS 46 (110)
T ss_pred cCCCcEEEEEEECC----CCCEEEEEEECCCCCcEEEEEE
Confidence 34666666654433 3457999999985444334433
No 146
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=28.79 E-value=3.3e+02 Score=22.41 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=23.4
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015554 164 DFLKKASEDAKKLVDEERAFARAEIESARAAVQ 196 (405)
Q Consensus 164 ~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~ 196 (405)
..+..|-....+++.+.|..|..||+..|+-..
T Consensus 18 ~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e 50 (105)
T PF03179_consen 18 EIVEEARKEREQRLKQAKEEAEKEIEEFRAEAE 50 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777778888888888877776443
No 147
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=28.77 E-value=4.9e+02 Score=24.31 Aligned_cols=94 Identities=24% Similarity=0.369 Sum_probs=53.2
Q ss_pred chHHHHHHHHHHHHHhhc-ccCCCC-----------hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH-HHHhh
Q 015554 104 EKHVLLKKLRDALESLRG-RVAGRN-----------KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADF-LKKAS 170 (405)
Q Consensus 104 er~vLLKkLR~~LesLrG-RvaGrn-----------KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~-lKqAS 170 (405)
.|..+-+.+++.|...-. .=.|=. .++|.+|+.-+ .+.++.. .+-..|-..-|+. +..|-
T Consensus 112 ~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~------~~a~q~~-~~~~~~ae~~~~~~~~~a~ 184 (261)
T TIGR01933 112 GRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDV------IIAREDE-ERYINEAEAYANEVVPKAR 184 (261)
T ss_pred CHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHHHH------HHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 566666666666554222 112322 34555554332 2222211 2222333333333 45577
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 015554 171 EDAKKLVDEERAFARAEIESARAAVQRVEESLQE 204 (405)
Q Consensus 171 eDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~E 204 (405)
-+|.+++.+..+.|.+.+..|++-..++....+.
T Consensus 185 ~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~a 218 (261)
T TIGR01933 185 GDAQRIIEEARGYKERRINRAKGDVARFTKLLAE 218 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 8888888888888888888888888777665553
No 148
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=28.70 E-value=6e+02 Score=25.34 Aligned_cols=114 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHH-----HHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCccc--------HHHHHHH
Q 015554 157 AEVKKLAD-----FLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQD--------FEELMKE 223 (405)
Q Consensus 157 ~EVkKlA~-----~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd--------~e~L~~E 223 (405)
....++|| |+....+.-..-...-..|...+++.++.-+...+.+|+.-.+........+ +.+|..+
T Consensus 144 ~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~ 223 (444)
T TIGR03017 144 RFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQ 223 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHH
Q ss_pred HHHHHh--------------------------hhhccCCccccccHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 015554 224 VQEARR--------------------------IKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKR 272 (405)
Q Consensus 224 VqEARR--------------------------IKmLH~PSKvMDME~El~~LR~ql~eKs~~~v~L~KEL~~~kr 272 (405)
...++. |.-|- ++.-+.|-++..|+..+.+++-..+.|+.+++..++
T Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~--~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~ 296 (444)
T TIGR03017 224 LVAAQAQVMDASSKEGGSSGKDALPEVIANPIIQNLK--TDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKS 296 (444)
T ss_pred HHHHHHHHHHHHHHHhccCCcccchhhhcChHHHHHH--HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
No 149
>KOG4557 consensus Origin recognition complex, subunit 6 [Replication, recombination and repair]
Probab=28.47 E-value=58 Score=32.53 Aligned_cols=46 Identities=30% Similarity=0.501 Sum_probs=34.2
Q ss_pred HHHHHHhcccchhHhHHHhhhchhHHHhhhHHHHhHHhhhhchHHHHHHHHHHHHHhhcccCCCChhh
Q 015554 63 AQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDD 130 (405)
Q Consensus 63 a~L~~q~kRLSVRDLA~KFEKgl~~AakLs~EaK~reva~Ler~vLLKkLR~~LesLrGRvaGrnKdd 130 (405)
..|++...-++|||||-+| |+.-+++-+. .+|.|.+||++---.-+
T Consensus 85 e~llgln~~~~VrdlaVQf--gc~evi~~a~--------------------~vl~syk~~lpaT~~~~ 130 (262)
T KOG4557|consen 85 ENLLGLNIKLNVRDLAVQF--GCVEVIKSAQ--------------------NVLSSYKERLPATRRAN 130 (262)
T ss_pred HHHhcchhhcCHHHHHHHH--hHHHHHHHHH--------------------HHHHHHHhcCchhhhcC
Confidence 4688999999999999999 6665555444 47888899887544433
No 150
>cd00336 Ribosomal_L22 Ribosomal protein L22/L17e. L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome.
Probab=28.44 E-value=1.7e+02 Score=24.31 Aligned_cols=27 Identities=37% Similarity=0.436 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHH
Q 015554 109 LKKLRDALESLRGRVAGRNKDDVEEAIAMVEALA 142 (405)
Q Consensus 109 LKkLR~~LesLrGRvaGrnKddveeaismVeaLa 142 (405)
.||+|-++.-+||+ .|++|+.+.+..-
T Consensus 12 ~kK~~~v~~~Irg~-------~v~~A~~~L~~~~ 38 (105)
T cd00336 12 PKKARLVARLIRGM-------SVDEALAQLEFVP 38 (105)
T ss_pred HHHHHHHHHHHcCC-------cHHHHHHHHHhCC
Confidence 58999999999986 5788888876654
No 151
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=28.30 E-value=36 Score=31.92 Aligned_cols=18 Identities=39% Similarity=0.850 Sum_probs=16.7
Q ss_pred ccCCCChhhHHHHHHHHH
Q 015554 122 RVAGRNKDDVEEAIAMVE 139 (405)
Q Consensus 122 RvaGrnKddveeaismVe 139 (405)
||.|+.+||.-++|+++-
T Consensus 129 RVtgKkrDDLQ~viallk 146 (161)
T PRK05412 129 RVTGKKRDDLQAVIALLR 146 (161)
T ss_pred EEecCCHhHHHHHHHHHH
Confidence 999999999999999874
No 152
>PRK11637 AmiB activator; Provisional
Probab=28.18 E-value=6.5e+02 Score=25.58 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=11.8
Q ss_pred ccccccCCCCcccceeeeEee
Q 015554 329 TKSVYAPEPFDVGRILQAEIT 349 (405)
Q Consensus 329 tk~~YAPEP~DVGr~LqadI~ 349 (405)
.-|+|||.+ |+++.++..
T Consensus 339 g~~v~A~~~---G~V~~~~~~ 356 (428)
T PRK11637 339 GTEVKAIAD---GRVLLADWL 356 (428)
T ss_pred CCeEEecCC---eEEEEeecc
Confidence 457888877 666666543
No 153
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=28.15 E-value=3.9e+02 Score=23.97 Aligned_cols=39 Identities=36% Similarity=0.398 Sum_probs=20.0
Q ss_pred HhhhhhhhhHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHH
Q 015554 144 QLTQREGELIQEKAEVKK-LADFLKKASEDAKKLVDEERA 182 (405)
Q Consensus 144 qltqrE~ELiQeK~EVkK-lA~~lKqASeDAkkiV~eERa 182 (405)
||-|-|.+.-.-=.+-+| =+.-||||-++|.+-|++=|+
T Consensus 10 QLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~ 49 (108)
T KOG1772|consen 10 QLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRS 49 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544332222222 234577777777666666554
No 154
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=27.94 E-value=6.9e+02 Score=25.81 Aligned_cols=64 Identities=28% Similarity=0.335 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHH-HHHHHHHHHHhhHHHHHHH--HHHHHhHHHHHHHHHHHHHHHH
Q 015554 136 AMVEALAVQLTQREGELIQEKAE-VKKLADFLKKASEDAKKLV--DEERAFARAEIESARAAVQRVE 199 (405)
Q Consensus 136 smVeaLavqltqrE~ELiQeK~E-VkKlA~~lKqASeDAkkiV--~eERa~A~aEIE~ArAaV~Rve 199 (405)
.-++.+--|+.+-...+.|.++. .++..+-+.-..+=+++-+ .+|...|++....|+|.+.+-.
T Consensus 105 ~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~ 171 (352)
T COG1566 105 AQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAAAQ 171 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhH
Confidence 33333333333333333344442 3333333333333333333 6888889999999999987776
No 155
>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]
Probab=27.89 E-value=2.7e+02 Score=29.12 Aligned_cols=76 Identities=25% Similarity=0.495 Sum_probs=56.3
Q ss_pred chhHHHhhhHHHHhHHhhhhchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHH
Q 015554 84 GLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE-LIQEKAEVKKL 162 (405)
Q Consensus 84 gl~~AakLs~EaK~reva~Ler~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~E-LiQeK~EVkKl 162 (405)
-+.+| +.+-+ +|+....-||.-+|.++.+.|+. ++|++...+++ .-|- +.+-+.|+...
T Consensus 41 Av~aA-~~a~~-~W~~~~~~eR~~iL~~~a~~l~~--------~~~ela~~~~~----------e~Gk~i~ea~~ei~~~ 100 (472)
T COG1012 41 AVAAA-RAAFE-AWSRLSAEERAAILRRIADLLEA--------RAEELAALITL----------ETGKPISEARGEIARA 100 (472)
T ss_pred HHHHH-HHHHH-HhhhCCHHHHHHHHHHHHHHHHH--------hHHHHHHHHHH----------HcCCCHHHHHHHHHHH
Confidence 34444 55555 89999999999999999999985 45555544443 2233 56668889999
Q ss_pred HHHHHHhhHHHHHHHHH
Q 015554 163 ADFLKKASEDAKKLVDE 179 (405)
Q Consensus 163 A~~lKqASeDAkkiV~e 179 (405)
+.++.-+.+.|+++-.+
T Consensus 101 ~~~~~~~a~~~~~~~~~ 117 (472)
T COG1012 101 ADFIRYYAEEARRLEGE 117 (472)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999866654
No 156
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=27.78 E-value=2.3e+02 Score=24.93 Aligned_cols=59 Identities=31% Similarity=0.348 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHh
Q 015554 188 IESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKS 257 (405)
Q Consensus 188 IE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~eKs 257 (405)
++.|++.+=.|...+.+- ...+.++.++..+.++.+ ....++.++.++..+..++.+-.
T Consensus 5 l~EA~~lLP~l~~~~~~~-----~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~i 63 (120)
T PF09969_consen 5 LEEANALLPLLRPILEEI-----RELKAELEELEERLQELE------DSLEVNGLEAELEELEARLRELI 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcc------chhhHHhHHHHHHHHHHHHHHHH
Confidence 456777777777776654 223345555555554443 33367777788877777776543
No 157
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=27.19 E-value=2.6e+02 Score=26.58 Aligned_cols=54 Identities=28% Similarity=0.310 Sum_probs=31.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH
Q 015554 174 KKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR 228 (405)
Q Consensus 174 kkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEAR 228 (405)
+.+-.+.|.....+.+..+.++.+-++.+++..+. ...-+..+.+|.+|++++.
T Consensus 120 ~e~~~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~-~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 120 AELGKEYREELEEEEEIYKEGLKIRQELIEEAKKK-REELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 34556677777777777777777666555544332 2223336666666666553
No 158
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=27.14 E-value=8.1e+02 Score=26.33 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=13.4
Q ss_pred cCCCCCCCCchhHHHHHhhcCCceeeEee
Q 015554 360 TGAVDPAPGLGSYVEALVRKHDVEFHVRA 388 (405)
Q Consensus 360 ~GPidpaaGL~~yVEaL~rk~~tEFNVvi 388 (405)
+|-|.| ..+|..+.|...||+-.|
T Consensus 270 dgrihp-----~riee~~~~~~~~~~~~i 293 (514)
T TIGR03319 270 DGRIHP-----ARIEEMVEKATKEVDNAI 293 (514)
T ss_pred cCCCCH-----HHHHHHHHHHHHHHHHHH
Confidence 455565 455666666655555444
No 159
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=27.13 E-value=4e+02 Score=22.79 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=18.4
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015554 165 FLKKASEDAKKLVDEERAFARAEIESARAAV 195 (405)
Q Consensus 165 ~lKqASeDAkkiV~eERa~A~aEIE~ArAaV 195 (405)
-|.+|...|+.|+++.+..|..+.+.+.+..
T Consensus 55 ~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a 85 (147)
T TIGR01144 55 ILKEAKDEAQEIIENANKRGSEILEEAKAEA 85 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666655555433
No 160
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=27.03 E-value=3e+02 Score=22.06 Aligned_cols=46 Identities=33% Similarity=0.409 Sum_probs=32.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH
Q 015554 182 AFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR 228 (405)
Q Consensus 182 a~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEAR 228 (405)
...+-|+...+++-.-.+.-|++-+.-.+.-. ++|+.|++++.|.|
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~-~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELE-QEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence 34455677778888888888887776544332 37888888888776
No 161
>PRK10404 hypothetical protein; Provisional
Probab=27.00 E-value=3.4e+02 Score=23.28 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=35.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 015554 161 KLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEH 205 (405)
Q Consensus 161 KlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eq 205 (405)
-+..+|+.++++++.=+++-|+.+.+-++.||......+..+.++
T Consensus 20 dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~ 64 (101)
T PRK10404 20 TLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYR 64 (101)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345567888899999999999999999999998777776655554
No 162
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=26.93 E-value=6.9e+02 Score=25.46 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=20.7
Q ss_pred ccHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 015554 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSK 271 (405)
Q Consensus 241 DME~El~~LR~ql~eKs~~~v~L~KEL~~~k 271 (405)
+-+.|+..|.....-+......|.+-+...+
T Consensus 352 ~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 352 EVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778887777777666666666555444
No 163
>PRK03918 chromosome segregation protein; Provisional
Probab=26.80 E-value=8.6e+02 Score=26.51 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=12.7
Q ss_pred HHHhhcccCCCChhhHHHHHHHHHHHHHHhhhh
Q 015554 116 LESLRGRVAGRNKDDVEEAIAMVEALAVQLTQR 148 (405)
Q Consensus 116 LesLrGRvaGrnKddveeaismVeaLavqltqr 148 (405)
+++|..++.+-+..++++-..=.+.+--++.+-
T Consensus 505 ~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~~~l 537 (880)
T PRK03918 505 LKELEEKLKKYNLEELEKKAEEYEKLKEKLIKL 537 (880)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333434443333333333333333
No 164
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=26.74 E-value=2.4e+02 Score=29.65 Aligned_cols=64 Identities=17% Similarity=0.103 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhcc
Q 015554 159 VKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLH 234 (405)
Q Consensus 159 VkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH 234 (405)
..-++..|+...+|. +++..+.|....+|||..++++..++.+ ..+.-.+.++++.+ +|+..++
T Consensus 400 lp~l~r~l~~~~~~~-----~~~e~~~a~~~~~~aa~~~l~~~~~~~~-----~~~~~~~~l~~~~~--~~~~~~~ 463 (525)
T TIGR00831 400 LPIFVKRKFVSEHSE-----RELEEIIARYIAARSAKFALMKAVEQLR-----IVEPVARELLPELD--ARIEELR 463 (525)
T ss_pred HHHHHHhcCCCCCCh-----hhHHHHHHHHHHHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHH--HHHHHHH
Confidence 344555555544432 3455567778889999999987776653 12234677777776 3444443
No 165
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=26.40 E-value=4.4e+02 Score=23.07 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=11.3
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHH
Q 015554 166 LKKASEDAKKLVDEERAFARAEIE 189 (405)
Q Consensus 166 lKqASeDAkkiV~eERa~A~aEIE 189 (405)
|.+|...|+.|+++.+..|..+.+
T Consensus 66 l~~a~~ea~~ii~~a~~~a~~~~~ 89 (159)
T PRK13461 66 LKNAKEEGKKIVEEYKSKAENVYE 89 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555544444444433
No 166
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=26.36 E-value=4.4e+02 Score=23.04 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=10.6
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHH
Q 015554 164 DFLKKASEDAKKLVDEERAFARAE 187 (405)
Q Consensus 164 ~~lKqASeDAkkiV~eERa~A~aE 187 (405)
..+..|-++|.+++++....|..+
T Consensus 12 ~I~~eA~~e~~~i~~~~~~~~~~~ 35 (198)
T PF01991_consen 12 EIIAEAQEEAEKILEEAEEEAEKE 35 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 167
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=26.28 E-value=4.8e+02 Score=23.39 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=9.0
Q ss_pred HHHhhHHHHHHHHHHHHhHHHH
Q 015554 166 LKKASEDAKKLVDEERAFARAE 187 (405)
Q Consensus 166 lKqASeDAkkiV~eERa~A~aE 187 (405)
+.+|-.+|.++.++.+..|..|
T Consensus 33 ~~ea~~~a~~i~~~~~~~a~~e 54 (188)
T PRK02292 33 IAEAEADAEEILEDREAEAERE 54 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333
No 168
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=26.28 E-value=5.2e+02 Score=23.80 Aligned_cols=62 Identities=27% Similarity=0.268 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhc
Q 015554 170 SEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKML 233 (405)
Q Consensus 170 SeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmL 233 (405)
.+|||+..|+-.+.|.+....+.. +-+++..++--...+..-...+.++..-++++||+-++
T Consensus 63 ~~dak~kAEkiL~aal~~ske~m~--~~l~e~~~~~~~avk~~i~~~~~~~~~~~~~~r~~a~~ 124 (144)
T PF11657_consen 63 GEDAKEKAEKILNAALAASKEAMN--KILQESAQEIVEAVKSEIDNSLAEVNDLVREARKAAIL 124 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777766666665444422 12333333333332222233566677777888888664
No 169
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=26.11 E-value=3.5e+02 Score=21.78 Aligned_cols=48 Identities=27% Similarity=0.320 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHH
Q 015554 107 VLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQ 154 (405)
Q Consensus 107 vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQ 154 (405)
.++..|-++|+.-+.-+...+-|++++.+.--+.+..++.+-|....+
T Consensus 15 ~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~ 62 (143)
T PF05130_consen 15 ELLQELLELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQ 62 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777778888888888888888887777655444
No 170
>CHL00034 rpl22 ribosomal protein L22
Probab=26.08 E-value=1.8e+02 Score=25.38 Aligned_cols=46 Identities=33% Similarity=0.406 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHH
Q 015554 109 LKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFAR 185 (405)
Q Consensus 109 LKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~ 185 (405)
-||+|-++..+||+ .|.+|+...+..- |.|+..-+|+++...+||.
T Consensus 21 pkK~r~va~~IRG~-------~v~~A~~~L~~~p------------------------kk~a~~i~klL~sA~aNA~ 66 (117)
T CHL00034 21 AHKARRVIDQIRGR-------SYEEALMILEFMP------------------------YRACYPILKLVYSAAANAS 66 (117)
T ss_pred HHHHHHHHHHHcCC-------cHHHHHHHHHHCc------------------------HHHHHHHHHHHHHHHHHHH
Confidence 58899999999986 5888998877522 5677777788877777773
No 171
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=25.94 E-value=9.9e+02 Score=27.06 Aligned_cols=85 Identities=24% Similarity=0.284 Sum_probs=55.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhcCcccHHHHHHHHHHHHhhhhc------cCC--cccc----
Q 015554 180 ERAFARAEIESARAAVQRVEESLQ-------EHEQMSRASGKQDFEELMKEVQEARRIKML------HQP--SKVM---- 240 (405)
Q Consensus 180 ERa~A~aEIE~ArAaV~Rve~al~-------Eqe~~s~~s~kqd~e~L~~EVqEARRIKmL------H~P--SKvM---- 240 (405)
.++--.-|+|+-.+.|..|+.-+. |-+.-.+.. -|.|++++|+.--+-|..= |+- -+.|
T Consensus 304 ~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~--sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslL 381 (629)
T KOG0963|consen 304 LEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR--SDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLL 381 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHH
Confidence 344444555666666666655443 322222222 4999999999999988864 332 1333
Q ss_pred -----ccHHHHHHHHHHHHHHhHHHHHHHHH
Q 015554 241 -----DMEHELRALRIQLAEKSKCSLLLRKE 266 (405)
Q Consensus 241 -----DME~El~~LR~ql~eKs~~~v~L~KE 266 (405)
-|++|...||.+.+..+..|.++.+-
T Consensus 382 l~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~ 412 (629)
T KOG0963|consen 382 LEKNRKLQNENASLRVANSGLSGRITELSKK 412 (629)
T ss_pred HHHHhhhhHHHHHHhccccccchhHHHHHhh
Confidence 38999999999999999888777653
No 172
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=25.68 E-value=97 Score=29.10 Aligned_cols=48 Identities=25% Similarity=0.513 Sum_probs=34.3
Q ss_pred eeEeeCCCCCCCCCCcceeEEEecCCCCccccccccccccccCCCCcc--cceeeeEeecC
Q 015554 293 LRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDV--GRILQAEITYN 351 (405)
Q Consensus 293 L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsGAtk~~YAPEP~DV--Gr~LqadI~~~ 351 (405)
.+..|..+.+.|+.-.+|+|. ++. .|+. .|+|-+.|- |.+|.|+|..+
T Consensus 48 v~~~p~~~~~~Diry~~ir~~--~~~-------~~~~--~~gps~~dPrTGeIl~a~V~l~ 97 (197)
T cd04276 48 VKVLPDDADPGDIRYNVIRWI--HSP-------NGGW--AYGPSVVDPRTGEILKADVILY 97 (197)
T ss_pred EEeCCCCcCcccceEEEEEEE--ecC-------CCcc--eecccccCCCCCCeEEEEEEeC
Confidence 344455555679998999997 221 2222 689999997 99999999854
No 173
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=25.63 E-value=3.9e+02 Score=24.79 Aligned_cols=54 Identities=41% Similarity=0.359 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCcc
Q 015554 173 AKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSK 238 (405)
Q Consensus 173 AkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSK 238 (405)
|||..+||=..|++=.| ||+. |-.|=+.+|--+++.-...||+.||=-|||-.|
T Consensus 21 aKKk~~EELgEa~~l~e-----------aL~~-ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqek 74 (134)
T PF15233_consen 21 AKKKSSEELGEAQALWE-----------ALQR-ELDSLNGEKVHLEEILNKKQETLRILQLHCQEK 74 (134)
T ss_pred HHHHhHHHHHHHHHHHH-----------HHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777766444 4443 344556667788888888999999999999766
No 174
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=25.48 E-value=61 Score=24.86 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=17.8
Q ss_pred HHHHHHhcccchhHhHHHhhhchh
Q 015554 63 AQLLEQQKRLSVRDLANKFEKGLA 86 (405)
Q Consensus 63 a~L~~q~kRLSVRDLA~KFEKgl~ 86 (405)
-+.+.++.+.|+.|||..|.--..
T Consensus 6 ~~~l~~~~~~S~~eLa~~~~~s~~ 29 (69)
T PF09012_consen 6 RDYLRERGRVSLAELAREFGISPE 29 (69)
T ss_dssp HHHHHHS-SEEHHHHHHHTT--HH
T ss_pred HHHHHHcCCcCHHHHHHHHCcCHH
Confidence 467889999999999999975444
No 175
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=25.12 E-value=5.5e+02 Score=23.70 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=11.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 015554 148 REGELIQEKAEVKKLADFLKK 168 (405)
Q Consensus 148 rE~ELiQeK~EVkKlA~~lKq 168 (405)
.+.++.+.+.+.+++..++++
T Consensus 76 ~~~~~~~~~~~~~r~~~L~~~ 96 (322)
T TIGR01730 76 AEAQLELAQRSFERAERLVKR 96 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 344455555556665555544
No 176
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=24.92 E-value=1.4e+02 Score=23.55 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=12.8
Q ss_pred CCCCcceeEEEecCCCC
Q 015554 304 ELSKCSIQWYRVPSEGG 320 (405)
Q Consensus 304 dlSkcsiQWyRv~~~gs 320 (405)
..+.-.|.||+..+++.
T Consensus 19 ~~~~~~i~W~k~~~~~~ 35 (106)
T cd05714 19 APHGPRIKWTKLESDGA 35 (106)
T ss_pred CCCCcEEEEEEeCCCCC
Confidence 36788999999975433
No 177
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=24.83 E-value=5.6e+02 Score=25.35 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=12.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 015554 182 AFARAEIESARAAVQRVEESLQ 203 (405)
Q Consensus 182 a~A~aEIE~ArAaV~Rve~al~ 203 (405)
..|++++++|++.+...+..|.
T Consensus 149 ~~a~a~~~~a~a~l~~a~~~l~ 170 (385)
T PRK09578 149 RQAKAAVASAKAELARAQLQLD 170 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3456666666666665555443
No 178
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=24.66 E-value=8.9e+02 Score=26.00 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=11.7
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 015554 167 KKASEDAKKLVDEERAFARAEIESARA 193 (405)
Q Consensus 167 KqASeDAkkiV~eERa~A~aEIE~ArA 193 (405)
++|-.+|+....+.+..|..|+..-|+
T Consensus 39 keA~~eAke~~ke~~~EaeeE~~~~R~ 65 (514)
T TIGR03319 39 EEAKKEAETLKKEALLEAKEEVHKLRA 65 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433333
No 179
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=24.46 E-value=9.1e+02 Score=26.05 Aligned_cols=114 Identities=12% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcccCCCCh-hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHH
Q 015554 109 LKKLRDALESLRGRVAGRNK-DDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAE 187 (405)
Q Consensus 109 LKkLR~~LesLrGRvaGrnK-ddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aE 187 (405)
+++|..-|+.|.-.+++-.. +++.+-..-.+.+-.++.+-+.++-.-+.+.+.+-.-+...-..-+++.+........
T Consensus 400 ~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~- 478 (650)
T TIGR03185 400 LRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINAFEL- 478 (650)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHH
Q 015554 188 IESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEV 224 (405)
Q Consensus 188 IE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EV 224 (405)
..+-...+++...|++--..........++....++
T Consensus 479 -~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~ 514 (650)
T TIGR03185 479 -ERAITIADKAKKTLKEFREKLLERKLQQLEEEITKS 514 (650)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 180
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=24.39 E-value=72 Score=25.84 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=19.5
Q ss_pred cccCcceeEeeCCCCCCCCCCcceeEEE
Q 015554 287 EALGSYLRIKPCSNNGPELSKCSIQWYR 314 (405)
Q Consensus 287 e~LGS~L~i~~~~d~~~dlSkcsiQWyR 314 (405)
-..|+.+++.....+.|. .-.|+||+
T Consensus 12 v~~G~~v~l~C~v~G~P~--~p~i~W~~ 37 (96)
T cd05865 12 ISVGESKFFLCQVAGEAK--DKDISWFS 37 (96)
T ss_pred ECCCCeEEEEEEEeCCCC--CCEEEEEC
Confidence 456888888887777775 23899997
No 181
>PRK09216 rplM 50S ribosomal protein L13; Reviewed
Probab=24.34 E-value=94 Score=28.35 Aligned_cols=43 Identities=28% Similarity=0.717 Sum_probs=31.9
Q ss_pred eEEEecCCCCc--------cccccccccccccCCCCcccceeeeEeecCCeEEEE
Q 015554 311 QWYRVPSEGGK--------RELISGATKSVYAPEPFDVGRILQAEITYNGQQITL 357 (405)
Q Consensus 311 QWyRv~~~gsk--------~E~IsGAtk~~YAPEP~DVGr~LqadI~~~g~k~~~ 357 (405)
+||=|...|-. .-++.|-.||.|.|. .|.|-++ |+.|.+++.+
T Consensus 14 ~W~viDA~~~~lGRlAs~IAk~L~GKhKp~y~p~-~d~Gd~V---vViNa~ki~~ 64 (144)
T PRK09216 14 KWYVIDAEGKVLGRLASEVASILRGKHKPTFTPH-VDTGDFV---IVINAEKVKL 64 (144)
T ss_pred CEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCC-CCCCCEE---EEEeCceeEE
Confidence 59988865543 246789999999994 6999886 5566666655
No 182
>smart00340 HALZ homeobox associated leucin zipper.
Probab=24.32 E-value=58 Score=25.08 Aligned_cols=25 Identities=40% Similarity=0.541 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHhhhhccCCcccccc
Q 015554 216 DFEELMKEVQEARRIKMLHQPSKVMDM 242 (405)
Q Consensus 216 d~e~L~~EVqEARRIKmLH~PSKvMDM 242 (405)
|--.|.+||+|-|++|. .|.-.|.|
T Consensus 20 eNrRL~ke~~eLralk~--~~~~~m~~ 44 (44)
T smart00340 20 ENRRLQKEVQELRALKL--SPPLYMQH 44 (44)
T ss_pred HHHHHHHHHHHHHhccc--CCcccccC
Confidence 34568999999999997 44456655
No 183
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=24.31 E-value=5.9e+02 Score=25.49 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 015554 150 GELIQEKAEVKKLADFLKK--ASEDAKKLVDEERAFARAEIESARAAVQRVEESL 202 (405)
Q Consensus 150 ~ELiQeK~EVkKlA~~lKq--ASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al 202 (405)
.+|.+.+.+.++.-+++++ .|...-.-...+...|+++++.|+|.+...+..|
T Consensus 117 a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l 171 (397)
T PRK15030 117 AAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINL 171 (397)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455556666666554 2211100001112234555556665555444443
No 184
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=24.22 E-value=4.7e+02 Score=22.63 Aligned_cols=57 Identities=28% Similarity=0.414 Sum_probs=37.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015554 149 EGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSR 210 (405)
Q Consensus 149 E~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~ 210 (405)
|.||..--..++.|..+=+++++ +..+....+++.++|++.+...+..++++.....
T Consensus 48 E~El~~Ha~~~~~L~~lr~e~~~-----~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le 104 (132)
T PF07926_consen 48 ERELVKHAEDIKELQQLREELQE-----LQQEINELKAEAESAKAELEESEASWEEQKEQLE 104 (132)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 66666666666666554333332 3355666777888888888888888877776543
No 185
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=24.20 E-value=5.7e+02 Score=25.74 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh--hhhcCcccHH
Q 015554 141 LAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQM--SRASGKQDFE 218 (405)
Q Consensus 141 LavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~--s~~s~kqd~e 218 (405)
+..++.+-+.+|.+.++....+..-.+ .++++++.|++.+...+.-++-.+.. ....-++|+|
T Consensus 97 ~~~~l~~A~a~l~~a~~~~~~~~~~~~---------------~~~a~l~~a~a~l~~a~~~~~R~~~L~~~g~iS~~~ld 161 (390)
T PRK15136 97 AEQAFEKAKTALANSVRQTHQLMINSK---------------QYQANIELQKTALAQAQSDLNRRVPLGNANLIGREELQ 161 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Q ss_pred HHHHHHHHHH
Q 015554 219 ELMKEVQEAR 228 (405)
Q Consensus 219 ~L~~EVqEAR 228 (405)
..+-+++.|+
T Consensus 162 ~a~~~~~~a~ 171 (390)
T PRK15136 162 HARDAVASAQ 171 (390)
T ss_pred HHHHHHHHHH
No 186
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=24.06 E-value=1.2e+03 Score=27.22 Aligned_cols=21 Identities=38% Similarity=0.522 Sum_probs=11.1
Q ss_pred cccccHHHHHHHHHHHHHHhH
Q 015554 238 KVMDMEHELRALRIQLAEKSK 258 (405)
Q Consensus 238 KvMDME~El~~LR~ql~eKs~ 258 (405)
+..+|+.+|+.++..+.+...
T Consensus 885 ~~~~l~~~l~~~~~~~~~~~~ 905 (1163)
T COG1196 885 EKEELEEELRELESELAELKE 905 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666655555544443
No 187
>PF00572 Ribosomal_L13: Ribosomal protein L13; InterPro: IPR005822 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L13 is one of the proteins from the large ribosomal subunit []. In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A17_I 4A1E_I 4A1A_I 4A1C_I 3D5B_N 3MS1_J 1VSP_H 3PYT_J 3PYO_J 3PYV_J ....
Probab=23.98 E-value=47 Score=29.44 Aligned_cols=31 Identities=32% Similarity=0.655 Sum_probs=25.4
Q ss_pred ccccccccccccCCCCcccceeeeEeecCCeEEEE
Q 015554 323 ELISGATKSVYAPEPFDVGRILQAEITYNGQQITL 357 (405)
Q Consensus 323 E~IsGAtk~~YAPEP~DVGr~LqadI~~~g~k~~~ 357 (405)
-++.|-.||.|.|. .|.|-.+ |+.|.+++.+
T Consensus 20 k~L~GKhk~~y~p~-~d~Gd~V---vViNae~i~~ 50 (128)
T PF00572_consen 20 KLLLGKHKPTYTPN-VDCGDHV---VVINAEKIVL 50 (128)
T ss_dssp HHHCTTSSTSSBTT-SSTTEEE---EEECGGGBEE
T ss_pred HHHhCCCCCccCcC-ccCCCEE---EEEcCeeeEe
Confidence 35789999999999 9999864 5678777777
No 188
>PF01322 Cytochrom_C_2: Cytochrome C'; InterPro: IPR002321 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class II includes the high-spin cytC' and a number of low-spin cytochromes, e.g. cyt c-556. The haem-attachment site is close to the C terminus. The cytC' are capable of binding such ligands as CO, NO or CN(-), albeit with rate and equilibrium constants 100 to 1,000,000-fold smaller than other high-spin haemoproteins []. This, coupled with its relatively low redox potential, makes it unlikely that cytC' is a terminal oxidase. Thus cytC' probably functions as an electron transfer protein []. The 3D structures of a number of cytC' have been determined. The molecule usually exists as a dimer, each monomer folding as a four-alpha-helix bundle incorporating a covalently-bound haem group at the core []. The Chromatium vinosum cytC' exhibits dimer dissociation upon ligand binding [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0005746 mitochondrial respiratory chain; PDB: 1BBH_A 2J9B_B 2J8W_A 1JAF_B 3ZTM_A 2XLD_A 2XL6_A 1E86_A 2YLD_A 2YKZ_A ....
Probab=23.90 E-value=4.3e+02 Score=22.03 Aligned_cols=94 Identities=20% Similarity=0.306 Sum_probs=68.1
Q ss_pred hhchHHHHHHHHHHHHHhhcccCCCC---hhhHHHHHHHHHHHHHHhh-------------hhhhhhHHHHHHHHHHHHH
Q 015554 102 SLEKHVLLKKLRDALESLRGRVAGRN---KDDVEEAIAMVEALAVQLT-------------QREGELIQEKAEVKKLADF 165 (405)
Q Consensus 102 ~Ler~vLLKkLR~~LesLrGRvaGrn---KddveeaismVeaLavqlt-------------qrE~ELiQeK~EVkKlA~~ 165 (405)
.=.|+-+.|.+...+..|.+=+-|.. .+.|..+...+..++-.+- .-=.+.-++..+.+.++.-
T Consensus 4 v~~Rq~~m~~~~~~~~~l~~~~~g~~~~d~~~~~~~a~~l~~~a~~~~~~F~~gs~~~~~s~A~~~Iw~~~~~F~~~~~~ 83 (122)
T PF01322_consen 4 VKARQAAMKAIGANMKALGAMLKGEKPFDAAAVAAAADALAALAKSLPDHFPEGSDGGDGSEAKPEIWEDPEDFKQLAQA 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSST-SHHHHHHHHHHHHHHHTSGGGGGSTTCSSTTSSSBSTHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhhhhhhCCCCCCCCccccccHHHHhCHHHHHHHHHH
Confidence 34688899999999999999999984 6778877877777775442 1222356778888888888
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015554 166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEES 201 (405)
Q Consensus 166 lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~a 201 (405)
|..+..+....+..- -.+..++++.+|+++
T Consensus 84 ~~~aa~~L~~aa~~~------d~~~~~~a~~~v~~~ 113 (122)
T PF01322_consen 84 FQKAAAALAAAAKSG------DLAAIKAAFGEVGKS 113 (122)
T ss_dssp HHHHHHHHHHHHHHT------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC------CHHHHHHHHHHHHHH
Confidence 888887776555221 356777777777665
No 189
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.79 E-value=6.6e+02 Score=26.90 Aligned_cols=101 Identities=24% Similarity=0.377 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhcccCCC--ChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHhHH
Q 015554 109 LKKLRDALESLRGRVAGR--NKDDVEEAIAMVEALAVQLTQREGELIQEKAEV-KKLADFLKKASEDAKKLVDEERAFAR 185 (405)
Q Consensus 109 LKkLR~~LesLrGRvaGr--nKddveeaismVeaLavqltqrE~ELiQeK~EV-kKlA~~lKqASeDAkkiV~eERa~A~ 185 (405)
+|.||.-.+.++-.+.-| ...+|++.+++=+.. .++.++=.+|..++-++ +.++.-+++.-+||-.+..+-+...
T Consensus 4 ~k~ir~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~-r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~- 81 (429)
T COG0172 4 LKLIRENPDAVREKLKKRGGDALDVDKLLELDEER-RKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELK- 81 (429)
T ss_pred HHHhhhCHHHHHHHHhhcCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH-
Confidence 566666666666666555 466777777764443 44444444444444433 3344344443445666665544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 015554 186 AEIESARAAVQRVEESLQEHEQMSRA 211 (405)
Q Consensus 186 aEIE~ArAaV~Rve~al~Eqe~~s~~ 211 (405)
.+|+.+.+....++..+++--....+
T Consensus 82 ~~l~~~e~~~~~~~~~l~~~ll~ipN 107 (429)
T COG0172 82 EKLKELEAALDELEAELDTLLLTIPN 107 (429)
T ss_pred HHHHhccHHHHHHHHHHHHHHHhCCC
Confidence 46666666666666666554444333
No 190
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=23.73 E-value=94 Score=24.37 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=18.2
Q ss_pred cccHHHHHHHHHHHHHHhHHHH
Q 015554 240 MDMEHELRALRIQLAEKSKCSL 261 (405)
Q Consensus 240 MDME~El~~LR~ql~eKs~~~v 261 (405)
.+||-||+.||.....|-.-.+
T Consensus 22 ~~ME~Eieelr~RY~~KRqPIl 43 (49)
T PF11629_consen 22 PEMEQEIEELRQRYQAKRQPIL 43 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHH
Confidence 5799999999999998865443
No 191
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=23.49 E-value=3.2e+02 Score=21.50 Aligned_cols=22 Identities=9% Similarity=0.235 Sum_probs=16.9
Q ss_pred CcceeEeeCCCCCCCCCCcceeEEE
Q 015554 290 GSYLRIKPCSNNGPELSKCSIQWYR 314 (405)
Q Consensus 290 GS~L~i~~~~d~~~dlSkcsiQWyR 314 (405)
|+...+.....+.|.. +|+||+
T Consensus 19 g~~v~l~C~a~g~P~p---~i~W~~ 40 (94)
T cd05850 19 EEKVTLGCRARASPPA---TYRWKM 40 (94)
T ss_pred CCeEEEEeEceeCCCC---EEEEEE
Confidence 5667777777777765 799998
No 192
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=23.49 E-value=1.2e+03 Score=26.89 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH
Q 015554 184 ARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR 228 (405)
Q Consensus 184 A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEAR 228 (405)
|...+|.|.+--.|+.+.|+++-..+..-..++++.+++|+++.+
T Consensus 434 ~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk 478 (775)
T PF10174_consen 434 ALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELK 478 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999988866666555678888888888765
No 193
>PRK10780 periplasmic chaperone; Provisional
Probab=23.46 E-value=5.3e+02 Score=22.97 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=21.7
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHH
Q 015554 140 ALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEI 188 (405)
Q Consensus 140 aLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEI 188 (405)
-|.-....++.||-....|..++..-|++ |+..+=+.+|..-+.||
T Consensus 47 ~le~~~~~~q~el~~~~~elq~~~~~~q~---~~~~ms~~~~~~~~~el 92 (165)
T PRK10780 47 QLENEFKGRASELQRMETDLQAKMQKLQR---DGSTMKGSDRTKLEKDV 92 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccccCHHHHHHHHHHH
Confidence 34444445555555555555555554443 23344444444444444
No 194
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=23.35 E-value=6.4e+02 Score=23.88 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh--hhhcCcccHH
Q 015554 141 LAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQM--SRASGKQDFE 218 (405)
Q Consensus 141 LavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~--s~~s~kqd~e 218 (405)
+..++.+.+..+.+-++++..+-.-+++ ...+-..+++.++.|++.....+.-++..... .....+++++
T Consensus 78 ~~~~l~~a~a~l~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~ 149 (334)
T TIGR00998 78 AELALAKAEANLAALVRQTKQLEITVQQ--------LQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELD 149 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHH
Q ss_pred HHHHHHHHHH
Q 015554 219 ELMKEVQEAR 228 (405)
Q Consensus 219 ~L~~EVqEAR 228 (405)
..+.+++.|+
T Consensus 150 ~a~~~~~~a~ 159 (334)
T TIGR00998 150 HARKALLSAK 159 (334)
T ss_pred HHHHHHHHHH
No 195
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=23.11 E-value=75 Score=22.90 Aligned_cols=30 Identities=30% Similarity=0.587 Sum_probs=22.3
Q ss_pred cccccCCCCcccceeeeEee-cCCeEEEEeecC
Q 015554 330 KSVYAPEPFDVGRILQAEIT-YNGQQITLTTTG 361 (405)
Q Consensus 330 k~~YAPEP~DVGr~LqadI~-~~g~k~~~~T~G 361 (405)
+.+|.|+|-+ -++.+.|+ ..|.+++|.|..
T Consensus 2 ~~vWvpD~~e--gfv~g~I~~~~g~~vtV~~~~ 32 (42)
T PF02736_consen 2 KWVWVPDPKE--GFVKGEIIEEEGDKVTVKTED 32 (42)
T ss_dssp TEEEEEESSS--SEEEEEEEEEESSEEEEEETT
T ss_pred CEEEEeCCcc--cEEEEEEEEEcCCEEEEEECC
Confidence 3567888866 56778887 788889988753
No 196
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=23.07 E-value=5.3e+02 Score=23.90 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHH
Q 015554 160 KKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEV 224 (405)
Q Consensus 160 kKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EV 224 (405)
.+....+..|-..|.+|+++.++.|..-++.|+.-..+..+....--. ...++-+..++++|
T Consensus 22 ~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~---l~~r~~ll~~k~~i 83 (198)
T PRK01558 22 RLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEANDYKRHALEASR---QAGRDLLISFEKSI 83 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
No 197
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=22.95 E-value=6.6e+02 Score=23.84 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHhhccc
Q 015554 105 KHVLLKKLRDALESLRGRV 123 (405)
Q Consensus 105 r~vLLKkLR~~LesLrGRv 123 (405)
+.++.|.+..+|+.=+-++
T Consensus 23 ~kfl~kPi~~~l~~R~~~I 41 (246)
T TIGR03321 23 KRFLYRPILDAMDAREKKI 41 (246)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 4456666777766544433
No 198
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=22.75 E-value=6.5e+02 Score=23.74 Aligned_cols=72 Identities=22% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-hhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHh
Q 015554 158 EVKKLADFLKK-ASEDAKKLVDEERAFARAEIESARAAVQ-RVEESLQEHEQMSRASGKQDFEELMKEVQEARR 229 (405)
Q Consensus 158 EVkKlA~~lKq-ASeDAkkiV~eERa~A~aEIE~ArAaV~-Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARR 229 (405)
++.++.+++.+ |-+.|++|.++.+..|..+.+.|.+..+ ..+.++..-+.-.+....+-+....-|..-.++
T Consensus 3 ~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~L 76 (194)
T COG1390 3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLL 76 (194)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 199
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=22.67 E-value=3.1e+02 Score=20.31 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=14.3
Q ss_pred cCcceeEeeCC-CCCCCCCCcceeEEE
Q 015554 289 LGSYLRIKPCS-NNGPELSKCSIQWYR 314 (405)
Q Consensus 289 LGS~L~i~~~~-d~~~dlSkcsiQWyR 314 (405)
.|+-+.+.... .+.|.. .|.||+
T Consensus 10 ~G~~v~l~C~~~~g~p~p---~i~W~k 33 (86)
T cd05724 10 VGEMAVLECSPPRGHPEP---TVSWRK 33 (86)
T ss_pred CCCCEEEEEECCCCCCCC---EEEEEE
Confidence 46667776543 444433 789998
No 200
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=22.66 E-value=1.6e+03 Score=28.10 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCcc--cHHHHHHHHH
Q 015554 186 AEIESARAAVQRVEESLQEHEQMSRASGKQ--DFEELMKEVQ 225 (405)
Q Consensus 186 aEIE~ArAaV~Rve~al~Eqe~~s~~s~kq--d~e~L~~EVq 225 (405)
+-|+-|+.-+..|++-..--|...++..+| +++..|+|++
T Consensus 1591 ~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1591 RDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555554 5666666654
No 201
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=22.60 E-value=1.4e+02 Score=26.37 Aligned_cols=62 Identities=24% Similarity=0.356 Sum_probs=47.2
Q ss_pred hhHhHHHhhhchhHHHhhhHH--HHhHHhhhhchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHH
Q 015554 74 VRDLANKFEKGLAAAAKLSEE--AKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVE 139 (405)
Q Consensus 74 VRDLA~KFEKgl~~AakLs~E--aK~reva~Ler~vLLKkLR~~LesLrGRvaGrnKddveeaismVe 139 (405)
+++|+.--|.=|.-...+|.+ .++|+= -+-+||+.|+.|...+++|+-|+|+-|.-+=..|.
T Consensus 17 l~~L~d~lEevL~ssg~~a~~e~~~lR~r----~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~ 80 (104)
T COG4575 17 LQELLDTLEEVLKSSGSLAGDEAEELRSK----AESALKEARDRLGDTGDAVVQRSKAAADATDDYVR 80 (104)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 567788888888877777766 444442 25789999999999999999999988877655553
No 202
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=22.38 E-value=2.4e+02 Score=20.41 Aligned_cols=24 Identities=29% Similarity=0.671 Sum_probs=16.7
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEE
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYR 314 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyR 314 (405)
.+|+-+.+.....+.|.. .|.||+
T Consensus 7 ~~G~~v~L~C~~~g~p~p---~i~W~k 30 (82)
T cd05856 7 PVGSSVRLKCVASGNPRP---DITWLK 30 (82)
T ss_pred cCCCeEEEEEEeeEeCCC---cEEEEE
Confidence 357777777766655543 589998
No 203
>PF05878 Phyto_Pns9_10: Phytoreovirus nonstructural protein Pns9/Pns10; InterPro: IPR008776 This family consists of the Phytoreovirus nonstructural proteins Pns9 and Pns10. The function of this family is unknown.
Probab=22.31 E-value=62 Score=33.16 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=37.2
Q ss_pred ccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHH
Q 015554 215 QDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLL 263 (405)
Q Consensus 215 qd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~eKs~~~v~L 263 (405)
+|+++--+..-.|-==-.+|||||.| |+-+|...|.+|..|....|++
T Consensus 173 ~Dv~~wleKl~~a~~g~~~~QKsk~q-M~~~i~~~Rn~I~n~I~~fVn~ 220 (312)
T PF05878_consen 173 DDVVEWLEKLPSAKGGILSNQKSKAQ-MRPEIQRIRNEILNKIQQFVNL 220 (312)
T ss_pred hhHHHHHhCCccccccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 35544445555555455789999998 9999999999999999888875
No 204
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.13 E-value=1.2e+03 Score=26.39 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 015554 152 LIQEKAEVKKLADFLKKASEDAKKLVD 178 (405)
Q Consensus 152 LiQeK~EVkKlA~~lKqASeDAkkiV~ 178 (405)
.-||-.++..+-+-.+.-++.|.++.+
T Consensus 574 ~e~Ql~~L~~l~e~~~~l~~~ae~Lae 600 (717)
T PF10168_consen 574 KEQQLKELQELQEERKSLRESAEKLAE 600 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555666666666666666666654
No 205
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.89 E-value=1.2e+03 Score=26.38 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=6.9
Q ss_pred CCCChhhHHHHHHH
Q 015554 124 AGRNKDDVEEAIAM 137 (405)
Q Consensus 124 aGrnKddveeaism 137 (405)
+|-..+=|+.|-.+
T Consensus 497 ~Glp~~ii~~A~~~ 510 (782)
T PRK00409 497 LGLPENIIEEAKKL 510 (782)
T ss_pred hCcCHHHHHHHHHH
Confidence 34445555555544
No 206
>PRK09098 type III secretion system protein HrpB; Validated
Probab=21.83 E-value=7.2e+02 Score=23.91 Aligned_cols=30 Identities=40% Similarity=0.468 Sum_probs=20.3
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015554 166 LKKASEDAKKLVDEERAFARAEIESARAAV 195 (405)
Q Consensus 166 lKqASeDAkkiV~eERa~A~aEIE~ArAaV 195 (405)
|.+|-++|.+|+++.|+.|..=++.||.-.
T Consensus 45 la~Ar~~A~~Il~~A~~~A~~I~~~A~~e~ 74 (233)
T PRK09098 45 LAAARARAERIVAEARAQAEAILEAARREA 74 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777666666543
No 207
>PRK00565 rplV 50S ribosomal protein L22; Reviewed
Probab=21.82 E-value=2.2e+02 Score=24.36 Aligned_cols=46 Identities=35% Similarity=0.385 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHH
Q 015554 109 LKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFAR 185 (405)
Q Consensus 109 LKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~ 185 (405)
.||+|-++.-+||+ .|++|+.+.+. +=|.|+..-.++++...+||.
T Consensus 14 pkK~~~v~~~IrG~-------~v~~A~~~L~~------------------------~pkk~a~~i~k~L~sA~aNA~ 59 (112)
T PRK00565 14 PRKARLVADLIRGK-------KVEEALAILKF------------------------SPKKAARLVKKVLKSAIANAE 59 (112)
T ss_pred HHHHHHHHHHHcCC-------cHHHHHHHHHH------------------------CcHhHHHHHHHHHHHHHHHHH
Confidence 58999999999986 57889888665 445566666677777777763
No 208
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=21.78 E-value=1.2e+03 Score=26.64 Aligned_cols=155 Identities=28% Similarity=0.365 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHhcccc-------hhHhHHHhhhchhHHHhhhHH-HHhHHhhhhchH-------HHHHHHHHHHHH
Q 015554 54 MKEVVARETAQLLEQQKRLS-------VRDLANKFEKGLAAAAKLSEE-AKLREAASLEKH-------VLLKKLRDALES 118 (405)
Q Consensus 54 lKEvVakEta~L~~q~kRLS-------VRDLA~KFEKgl~~AakLs~E-aK~reva~Ler~-------vLLKkLR~~Les 118 (405)
|-+.+....-+|..-.-||+ ...+..+.|+++.---++-+. -..|+=+.-|+. --++.|+.-+++
T Consensus 404 Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~ 483 (775)
T PF10174_consen 404 LEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLES 483 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666766 455667777777644333332 111111222221 234555555666
Q ss_pred hhcccCCCC------hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHH-----HHHHHHHhHHHH
Q 015554 119 LRGRVAGRN------KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKK-----LVDEERAFARAE 187 (405)
Q Consensus 119 LrGRvaGrn------KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkk-----iV~eERa~A~aE 187 (405)
|.+.+.-+. ++++..-.|--+=---.+.+-+.++-+.+.++.||-+-++.+-.+++. .++.+=+-...+
T Consensus 484 LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee 563 (775)
T PF10174_consen 484 LQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREE 563 (775)
T ss_pred HhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHH
Confidence 655554443 222211111111111123444577777788888888888774444432 344444445567
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 015554 188 IESARAAVQRVEESLQEHEQM 208 (405)
Q Consensus 188 IE~ArAaV~Rve~al~Eqe~~ 208 (405)
.+.|++=|-|+-.+|++-++.
T Consensus 564 ~~kaq~EVERLl~~L~~~E~E 584 (775)
T PF10174_consen 564 SEKAQAEVERLLDILREAENE 584 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777888888887777765544
No 209
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=21.76 E-value=2e+02 Score=26.31 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcccchhHhHHHhhhchhHHHhhhHHHHhHHhhhhchHHHHHHHHHHH
Q 015554 60 RETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDAL 116 (405)
Q Consensus 60 kEta~L~~q~kRLSVRDLA~KFEKgl~~AakLs~EaK~reva~Ler~vLLKkLR~~L 116 (405)
++-.+++.++.++||.|||..|. .|+.-=.|++..|+.+-++.+.+.+-
T Consensus 10 ~~Il~~l~~~~~~~~~~La~~~~--------vS~~TiRRDl~~L~~~g~~~r~~~~~ 58 (185)
T PRK04424 10 KALQELIEENPFITDEELAEKFG--------VSIQTIRLDRMELGIPELRERIKHVA 58 (185)
T ss_pred HHHHHHHHHCCCEEHHHHHHHHC--------cCHHHHHHHHHHHhcchHHHHHHHHH
Confidence 44567889999999999999986 56665678999999999999988743
No 210
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=21.69 E-value=63 Score=27.36 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=13.8
Q ss_pred CcccHHHHHHHHHHHHh
Q 015554 213 GKQDFEELMKEVQEARR 229 (405)
Q Consensus 213 ~kqd~e~L~~EVqEARR 229 (405)
-++.-++|++||+|||+
T Consensus 66 cpeA~~eL~~eI~eAK~ 82 (91)
T PF08285_consen 66 CPEAAKELQKEIKEAKA 82 (91)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34567899999999985
No 211
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=21.67 E-value=1e+02 Score=23.06 Aligned_cols=23 Identities=9% Similarity=0.417 Sum_probs=17.8
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEE
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYR 314 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyR 314 (405)
.|+.+.+.....+.|. ..|+|||
T Consensus 8 ~G~~~~L~C~~~g~P~---p~i~W~k 30 (85)
T cd05857 8 AANTVKFRCPAAGNPT---PTMRWLK 30 (85)
T ss_pred CCCEEEEEEEcCCCCC---CEEEEEE
Confidence 4788888877777664 4799998
No 212
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=21.61 E-value=8.4e+02 Score=24.74 Aligned_cols=95 Identities=21% Similarity=0.231 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH---
Q 015554 157 AEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAA-----VQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR--- 228 (405)
Q Consensus 157 ~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAa-----V~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEAR--- 228 (405)
.+...|++.|++=| .+..+|..||.. +.++-.-|++- -+..-+....+|+.|+.+|
T Consensus 145 ~~~~~L~~aL~~~S------------~~~~~I~~aRL~qD~~I~~~Fn~~l~~~----Ln~~~~~a~k~RkkV~~sRL~~ 208 (289)
T PF10455_consen 145 EDEDPLSKALLKYS------------SAYEKIAQARLEQDQLIQKEFNKKLQTT----LNTDFKKANKARKKVENSRLQF 208 (289)
T ss_pred CcccHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777666644 344555555543 33333333321 1112235667888888877
Q ss_pred -----hhhhccCCccccccHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015554 229 -----RIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKEL 267 (405)
Q Consensus 229 -----RIKmLH~PSKvMDME~El~~LR~ql~eKs~~~v~L~KEL 267 (405)
.+|..-.|.|-=....+++.+=++|...+...+.+.+++
T Consensus 209 D~~R~~~k~~~~pekee~~r~~lE~aEDeFv~aTeeAv~~Mk~v 252 (289)
T PF10455_consen 209 DAARANLKNKAKPEKEEQLRVELEQAEDEFVSATEEAVEVMKEV 252 (289)
T ss_pred HHHHHHhcccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445788877777889999999999999999998887
No 213
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.28 E-value=1.3e+03 Score=26.50 Aligned_cols=79 Identities=25% Similarity=0.344 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh---hhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHH
Q 015554 183 FARAEIESARAAVQRVEESLQEHEQM---SRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKC 259 (405)
Q Consensus 183 ~A~aEIE~ArAaV~Rve~al~Eqe~~---s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~eKs~~ 259 (405)
.-.||.+++|.-+....+||-+-... +-.+|-..-|-|-.|-- ||---. --|+.+||+||..+|+-+.++-.+
T Consensus 54 Eleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESa-akE~~y---l~kI~eleneLKq~r~el~~~q~E 129 (772)
T KOG0999|consen 54 ELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESA-AKEEYY---LQKILELENELKQLRQELTNVQEE 129 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH-HhHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888887888877653322 22333333344443321 111111 126789999999999999887655
Q ss_pred HHHHHH
Q 015554 260 SLLLRK 265 (405)
Q Consensus 260 ~v~L~K 265 (405)
--.|-+
T Consensus 130 ~erl~~ 135 (772)
T KOG0999|consen 130 NERLEK 135 (772)
T ss_pred HHHHHH
Confidence 444433
No 214
>PF12392 DUF3656: Collagenase ; InterPro: IPR020988 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This domain is found in a number of proteins belonging to the MEROPS peptidase family U32. Peptidase family U32 contains endopeptidases, including collagenase, from bacteria.
Probab=21.27 E-value=2.3e+02 Score=23.79 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=38.8
Q ss_pred cccceeeeEee-cCCeEEEEeecCCCCCCCC----chhHHHHHhhcCCceeeEee
Q 015554 339 DVGRILQAEIT-YNGQQITLTTTGAVDPAPG----LGSYVEALVRKHDVEFHVRA 388 (405)
Q Consensus 339 DVGr~LqadI~-~~g~k~~~~T~GPidpaaG----L~~yVEaL~rk~~tEFNVvi 388 (405)
..|.-+...+. .+|..+++.+..++.||-- -.+--+.|-+=|+|.|.+.=
T Consensus 33 ~~g~p~~l~~~d~~~~~v~~~~~~~~e~A~~~p~~~e~i~~ql~KlG~T~F~~~~ 87 (122)
T PF12392_consen 33 KKGEPLKLTLSDEDGNSVEVTSEIVPEPAKKRPLDEERIRKQLSKLGNTPFELEN 87 (122)
T ss_pred ecCCCEEEEEEECCCcEEEEEecCCchhhCCCccCHHHHHHHHHhhCCCcEEEEE
Confidence 45666788887 8999999988888887754 45677788888999997643
No 215
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=21.11 E-value=7.6e+02 Score=23.87 Aligned_cols=88 Identities=9% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcc-cH
Q 015554 139 EALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQ-DF 217 (405)
Q Consensus 139 eaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kq-d~ 217 (405)
+..+-.|..-|.-..+-+.....--.-++.|...|..|+++.+..|..+.+...+..+.=-+.+.++-+..-..+++ -+
T Consensus 39 ~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~ 118 (250)
T PRK14474 39 QRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFF 118 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 015554 218 EELMKEVQE 226 (405)
Q Consensus 218 e~L~~EVqE 226 (405)
.+|+++|-.
T Consensus 119 ~~L~~~v~~ 127 (250)
T PRK14474 119 KALQQQTGQ 127 (250)
T ss_pred HHHHHHHHH
No 216
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=21.01 E-value=1.3e+02 Score=23.80 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=22.3
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccccc
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISG 327 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsG 327 (405)
.|....+....++.+ +.-.+.|||..+.+.-..+|+.
T Consensus 14 ~G~~v~L~C~~~~~~--~~~~~~Wyrq~~g~~~~~l~~~ 50 (106)
T cd04980 14 PGESATISCKASQSV--SSNYLAWYQQKPGQAPKLLIYG 50 (106)
T ss_pred CCCCEEEEEEECCCC--CCCcEEEEEECCCCCcEEEEEC
Confidence 355556655433322 4567999999985555555544
No 217
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=21.00 E-value=3.7e+02 Score=27.01 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=49.2
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHh
Q 015554 164 DFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARR 229 (405)
Q Consensus 164 ~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARR 229 (405)
++||.|-|-+| ++++-..-+|++|.--..+|.++.-|++-|.....+--|--+.|+ -+.+|+.
T Consensus 61 ~llkla~eq~k--~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLk-si~~A~k 123 (272)
T KOG4552|consen 61 TLLKLAPEQQK--REQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLK-SIKEAEK 123 (272)
T ss_pred HHHHHhHhHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhc
Confidence 46888988886 477777888999999999999999999999988777665555553 4556653
No 218
>PF10549 ORF11CD3: ORF11CD3 domain; InterPro: IPR018877 This entry represents the carboxy-terminal domain from ORF11 (Q9XJS9 from SWISSPROT), one of the proteins of Pseudomonas phage D3 (Bacteriophage D3). The function of these proteins are unknown [].
Probab=20.87 E-value=3e+02 Score=21.88 Aligned_cols=48 Identities=21% Similarity=0.210 Sum_probs=38.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHH
Q 015554 177 VDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQ 225 (405)
Q Consensus 177 V~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVq 225 (405)
+.+|+-.||+|...=+.-.-=.+..|-+. +.-..--.+.++.|.+++|
T Consensus 4 ~~~e~n~ac~e~~~~K~~AS~~GrgL~~W-k~~Kp~l~~ki~~l~~~~Q 51 (57)
T PF10549_consen 4 LMAEYNQACAEYKKEKDIASLCGRGLNRW-KWKKPQLEQKIEELEEQLQ 51 (57)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHH-HHhhHHHHHHHHHHHHHhh
Confidence 56788999999998888888889999998 5555556667888888776
No 219
>PRK04863 mukB cell division protein MukB; Provisional
Probab=20.70 E-value=1.6e+03 Score=27.59 Aligned_cols=84 Identities=12% Similarity=0.153 Sum_probs=45.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCc--ccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHh
Q 015554 180 ERAFARAEIESARAAVQRVEESLQEHEQMSRASGK--QDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKS 257 (405)
Q Consensus 180 ERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~k--qd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~eKs 257 (405)
+.+....++..+++-+...+++++.-++.-+-.+- =..++|...+..-. .++-.|+.++..|..++....
T Consensus 398 qLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~--------aklee~e~qL~elE~kL~~le 469 (1486)
T PRK04863 398 QLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQ--------AKEQEATEELLSLEQKLSVAQ 469 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555444441 13455554444332 234456667777777776666
Q ss_pred HHHHHHHHHHHHhh
Q 015554 258 KCSLLLRKELAMSK 271 (405)
Q Consensus 258 ~~~v~L~KEL~~~k 271 (405)
...-++++++....
T Consensus 470 a~leql~~~~~~l~ 483 (1486)
T PRK04863 470 AAHSQFEQAYQLVR 483 (1486)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665433
No 220
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.57 E-value=2.2e+02 Score=30.84 Aligned_cols=173 Identities=21% Similarity=0.246 Sum_probs=102.2
Q ss_pred HHHHHH-hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh---hhhcCcc-c-H----HHHHHHHHHHHhhhh
Q 015554 163 ADFLKK-ASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQM---SRASGKQ-D-F----EELMKEVQEARRIKM 232 (405)
Q Consensus 163 A~~lKq-ASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~---s~~s~kq-d-~----e~L~~EVqEARRIKm 232 (405)
+|+|-. .+--|++||+--...++-.|+.-.-+|.-..--.+=++-+ |-.+|.+ | + ++|-.+--.-|||+|
T Consensus 73 ~nyf~~CS~h~A~~I~~~R~~~~r~q~~~l~~~~~n~~~~vkf~~df~~~s~~~Gd~VeIvE~~~eeme~~f~a~hr~~~ 152 (514)
T KOG3130|consen 73 DNYFAKCSAHQAVGIVEHRKEHVRKQIDDLKKVMKNFESRVKFTEDFQKMSDAAGDIVEIVEEIKEEMEFEFKAKHRIAH 152 (514)
T ss_pred cchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcccHhhccCCCCCeehhHHhhhhHHHHHHHHHHHhhh
Confidence 566655 4567999999999999999999988887776666555544 4455533 1 2 223334445588888
Q ss_pred ccCC-cccc----------ccHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcccCCceee--ccccccCcceeEeeCC
Q 015554 233 LHQP-SKVM----------DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYEL--DGSEALGSYLRIKPCS 299 (405)
Q Consensus 233 LH~P-SKvM----------DME~El~~LR~ql~eKs~~~v~L~KEL~~~kr~~en~~~~yeL--eG~e~LGS~L~i~~~~ 299 (405)
.-+- -+.= ||.++.--+|..+.|+-..-+.=|.|| ..+|.|.++.+ +|.+.||+-+-.--++
T Consensus 153 ~~~~~p~~~diI~~~~~~~d~~~~dvl~~d~ele~~l~d~~~qEel-----~~~~~skP~~v~~e~ed~l~k~eE~Ee~n 227 (514)
T KOG3130|consen 153 KPHSKPKTSDIIFEADIANDVKSKDVLLADKELEARLEDLERQEEL-----LGELDSKPDTVIAEGEDTLSKEEEKEERN 227 (514)
T ss_pred ccccccchhhHHHHHHhhcchhhhhccCchHHHHHHHHHHhhcccc-----cccCCCCchhhhccchhhhHHHHHHHHhh
Confidence 7542 1222 333333333433333332222222222 33456666665 7999999999888877
Q ss_pred CCCCCCCCcceeEEEecCCCCccccccccccccccCCCCcccceeeeEeecCCe
Q 015554 300 NNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQ 353 (405)
Q Consensus 300 d~~~dlSkcsiQWyRv~~~gsk~E~IsGAtk~~YAPEP~DVGr~LqadI~~~g~ 353 (405)
.+++.--|-.+ |-...+.+|++- +||---|.+|-.-+.||+
T Consensus 228 t~~~~~~k~td--------~~~~~l~~~~~~-----tp~s~~r~~~~n~sv~~~ 268 (514)
T KOG3130|consen 228 TNVNAMHKVTD--------SHTPCLKDVASS-----TPFSGQRNSQLNCSVNGS 268 (514)
T ss_pred ccchhhhhhhc--------ccchHhhcCCCc-----CcchhhhhhcccccccCC
Confidence 66666555443 555666666653 455555655554444444
No 221
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=20.54 E-value=3.7e+02 Score=20.06 Aligned_cols=42 Identities=26% Similarity=0.407 Sum_probs=32.8
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHH
Q 015554 137 MVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIE 189 (405)
Q Consensus 137 mVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE 189 (405)
|+++++-.+|+. |++.+..|++ |+=.+|+++.+.+..++-.+
T Consensus 9 ~~~~y~~~ft~~---------El~~i~~FY~--Sp~Gqk~~~~~~~~~~~~~~ 50 (64)
T PF09832_consen 9 MAPIYAEHFTEE---------ELDAILAFYE--SPLGQKIVAKEPALMQASMQ 50 (64)
T ss_dssp HHHHHHHHS-HH---------HHHHHHHHHH--SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHH---------HHHHHHHHHC--CHHhHHHHHHhHHHHHHHHH
Confidence 567788888764 6788999986 78889999998887776555
No 222
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.53 E-value=1.6e+03 Score=27.51 Aligned_cols=141 Identities=25% Similarity=0.350 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhh-----------------hhhhhhHHHHHHHHH-HHHHHHH
Q 015554 107 VLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLT-----------------QREGELIQEKAEVKK-LADFLKK 168 (405)
Q Consensus 107 vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqlt-----------------qrE~ELiQeK~EVkK-lA~~lKq 168 (405)
...+.|++.++.+.|--.-.++|.|+++-.=.+-|+-.+. ....+|-.+....++ +.++-.+
T Consensus 885 ~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~ 964 (1293)
T KOG0996|consen 885 ARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEE 964 (1293)
T ss_pred HHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999988877777644332 222222222222221 1111111
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHH
Q 015554 169 ASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRA 248 (405)
Q Consensus 169 ASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~ 248 (405)
...+-.+.++ -..++ -..++++.|....++.. +++++.+.+.+.+-.+.+ +||++-|++
T Consensus 965 ~~~~~~k~~E-----~~~~~-------~e~~~~~~E~k~~~~~~-k~~~e~i~k~~~~lk~~r--------Id~~~K~e~ 1023 (1293)
T KOG0996|consen 965 LKGLEEKAAE-----LEKEY-------KEAEESLKEIKKELRDL-KSELENIKKSENELKAER--------IDIENKLEA 1023 (1293)
T ss_pred HhhhHHHHHH-----HHHHH-------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh--------ccHHHHHHH
Confidence 1111112222 11222 22344455554444433 447777777777665543 578999999
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 015554 249 LRIQLAEKSKCSLLLRKELA 268 (405)
Q Consensus 249 LR~ql~eKs~~~v~L~KEL~ 268 (405)
.+.++.|--...-+..|.+.
T Consensus 1024 ~~~~l~e~~~~~~~~~k~~~ 1043 (1293)
T KOG0996|consen 1024 INGELNEIESKIKQPEKELK 1043 (1293)
T ss_pred HHHHHHHHHhhhhhHHHhhC
Confidence 99998887777666666553
No 223
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=20.53 E-value=3.4e+02 Score=20.19 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=14.4
Q ss_pred CcceeEeeCCCCCCCCCCcceeEEE
Q 015554 290 GSYLRIKPCSNNGPELSKCSIQWYR 314 (405)
Q Consensus 290 GS~L~i~~~~d~~~dlSkcsiQWyR 314 (405)
|+.+.+.....+.|. -.|+||+
T Consensus 1 G~~v~l~C~~~G~P~---p~i~W~k 22 (76)
T cd05867 1 GETARLDCQVEGIPT---PNITWSI 22 (76)
T ss_pred CCeEEEEEEeeEeCC---CeEEEEE
Confidence 455666665555553 3799997
No 224
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=20.49 E-value=5.2e+02 Score=28.48 Aligned_cols=83 Identities=30% Similarity=0.426 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHH
Q 015554 167 KKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHEL 246 (405)
Q Consensus 167 KqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El 246 (405)
|.|-+--+||.+.=-..-||| .+-.-.-.|++.|-+||++. +.+|+|+|.-.+ ||-|++-|..---+=---.||
T Consensus 238 k~akehv~km~kdle~Lq~aE-qsl~dlQk~Lekar~e~rnv--avek~~lerkl~---ea~rl~elreg~e~e~~rkel 311 (575)
T KOG4403|consen 238 KKAKEHVNKMMKDLEGLQRAE-QSLEDLQKRLEKAREEQRNV--AVEKLDLERKLD---EAPRLSELREGVENETSRKEL 311 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhch--hhhhhhHHHHHh---hhhhhhhhhcchhHHHHHHHH
Q ss_pred HHHHHHHHH
Q 015554 247 RALRIQLAE 255 (405)
Q Consensus 247 ~~LR~ql~e 255 (405)
+.||.+|.+
T Consensus 312 E~lR~~L~k 320 (575)
T KOG4403|consen 312 EQLRVALEK 320 (575)
T ss_pred HHHHHHHHH
No 225
>PF14174 YycC: YycC-like protein
Probab=20.46 E-value=1.2e+02 Score=24.26 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=25.8
Q ss_pred hHHHhhhHH--HHhHHhhhhchHHHHHHHHHH
Q 015554 86 AAAAKLSEE--AKLREAASLEKHVLLKKLRDA 115 (405)
Q Consensus 86 ~~AakLs~E--aK~reva~Ler~vLLKkLR~~ 115 (405)
.||.|||+. +-+.+++-+=.|+|+.||..+
T Consensus 9 eTA~kLs~~L~vPlE~lMHmPqHIL~qKl~El 40 (53)
T PF14174_consen 9 ETAVKLSKKLGVPLEQLMHMPQHILMQKLAEL 40 (53)
T ss_pred HHHHHHHHHHCCcHHHHhcCcHHHHHHHHHHH
Confidence 488999987 557899999999999999765
No 226
>PF02477 Nairo_nucleo: Nucleocapsid N protein; InterPro: IPR003486 The nucleoprotein of the ssRNA negative-strand Nairovirus is an internal part of the virus particle.; GO: 0019013 viral nucleocapsid; PDB: 3U3I_A.
Probab=20.33 E-value=87 Score=33.21 Aligned_cols=44 Identities=30% Similarity=0.462 Sum_probs=30.9
Q ss_pred HhhhhchHHHHHHHHHHHHHhhcccCCCChhhHHHH--HHHHHHHHH
Q 015554 99 EAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEA--IAMVEALAV 143 (405)
Q Consensus 99 eva~Ler~vLLKkLR~~LesLrGRvaGrnKddveea--ismVeaLav 143 (405)
-++-||++-.+..+|..|.+|+|-| -.|||+||.. =.||.-|--
T Consensus 238 k~~eldg~~~~ed~k~~l~~l~~w~-~~~kd~~e~~k~~elv~~~~k 283 (442)
T PF02477_consen 238 KLAELDGKKVLEDIKKTLLDLKKWV-EDNKDEVEDGKGDELVKTLTK 283 (442)
T ss_dssp HTTT----THHHHHHHHHHHHHHHH-HHTGGGS-HHHHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHH-HhchHhhhcccHHHHHHHHHH
Confidence 3677999999999999999999987 4799999987 455554433
No 227
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=20.02 E-value=1.1e+03 Score=25.14 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=27.1
Q ss_pred CcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHH
Q 015554 213 GKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLA 254 (405)
Q Consensus 213 ~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~ 254 (405)
..+.++++...+..-++.+.-|.|+ ..++-..+..++..|.
T Consensus 299 dp~~L~ele~RL~~l~~LkrKyg~s-~e~l~~~~~~l~~eL~ 339 (563)
T TIGR00634 299 DPERLNEIEERLAQIKRLKRKYGAS-VEEVLEYAEKIKEELD 339 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHH
Confidence 4567888888888889998888875 4444444444444433
Done!