Query 015554
Match_columns 405
No_of_seqs 37 out of 39
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 14:38:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dix_A Plectin-related protein 100.0 1.7E-63 5.9E-68 459.8 10.7 133 271-403 5-141 (230)
2 4djg_A Plectin-related protein 99.9 4.9E-29 1.7E-33 187.3 3.3 52 100-151 1-52 (52)
3 3vkg_A Dynein heavy chain, cyt 93.8 0.55 1.9E-05 56.9 14.0 139 129-270 1927-2068(3245)
4 2dfs_A Myosin-5A; myosin-V, in 88.6 2.6 9E-05 46.2 11.5 77 185-266 976-1052(1080)
5 3ol1_A Vimentin; structural ge 86.0 8.1 0.00028 32.2 10.5 79 166-253 18-99 (119)
6 3oja_B Anopheles plasmodium-re 78.5 40 0.0014 32.7 13.8 38 240-277 547-585 (597)
7 3swk_A Vimentin; cytoskeleton, 78.3 8.5 0.00029 30.7 7.5 67 178-253 13-79 (86)
8 3na7_A HP0958; flagellar bioge 77.0 43 0.0015 30.3 17.5 177 114-298 32-211 (256)
9 3vkg_A Dynein heavy chain, cyt 71.2 1E+02 0.0036 38.1 17.3 28 53-85 1859-1886(3245)
10 3oja_B Anopheles plasmodium-re 67.1 95 0.0033 30.1 14.2 26 243-268 543-568 (597)
11 3mq9_A Bone marrow stromal ant 62.1 62 0.0021 30.8 10.9 86 164-263 373-469 (471)
12 1i84_S Smooth muscle myosin he 61.0 39 0.0013 37.0 10.3 8 33-40 765-772 (1184)
13 4etp_A Kinesin-like protein KA 60.8 51 0.0017 32.3 10.2 40 350-389 137-192 (403)
14 4e81_A Chaperone protein DNAK; 60.0 67 0.0023 28.8 10.2 17 125-141 118-134 (219)
15 3lh2_H FV 4E10 heavy chain; ep 56.4 29 0.00099 28.3 6.6 68 289-359 16-85 (137)
16 4efa_E V-type proton ATPase su 55.2 99 0.0034 27.4 10.4 35 156-192 14-49 (233)
17 2dfs_A Myosin-5A; myosin-V, in 53.6 2.5E+02 0.0085 31.0 15.0 28 216-251 1024-1051(1080)
18 3fpp_A Macrolide-specific effl 52.5 42 0.0014 30.2 7.6 59 144-202 84-144 (341)
19 4h7n_A Aldehyde dehydrogenase; 51.0 68 0.0023 31.3 9.3 66 95-178 42-107 (474)
20 2i1j_A Moesin; FERM, coiled-co 50.7 4.1 0.00014 41.6 0.7 124 89-229 321-447 (575)
21 4dk0_A Putative MACA; alpha-ha 48.3 45 0.0015 30.3 7.1 12 338-349 279-290 (369)
22 3k1k_C Enhancer; nanobody, ant 47.9 57 0.0019 25.6 6.8 38 288-326 15-52 (123)
23 2ens_A Advanced glycosylation 46.0 21 0.00072 25.6 3.7 24 288-314 23-46 (96)
24 3osk_A Cytotoxic T-lymphocyte 45.8 26 0.0009 27.4 4.6 38 288-325 14-51 (130)
25 3r0m_A Llama VHH A12; IG domai 43.9 62 0.0021 26.6 6.8 36 289-325 14-49 (143)
26 2otu_A FV light chain variable 42.8 26 0.00089 26.4 4.0 36 289-326 15-50 (115)
27 1c1g_A Tropomyosin; contractIl 42.6 1.4E+02 0.0047 24.4 17.6 10 244-253 174-183 (284)
28 3qh9_A Liprin-beta-2; coiled-c 42.4 38 0.0013 27.7 5.0 44 216-267 20-77 (81)
29 2ykz_A Cytochrome C'; electron 41.9 1.4E+02 0.0048 24.3 9.6 94 103-202 10-116 (127)
30 4gjt_B Poliovirus receptor-rel 41.5 30 0.001 26.5 4.2 37 288-324 13-49 (123)
31 4hwu_A Fibroblast growth facto 40.0 96 0.0033 21.9 6.5 53 288-345 14-68 (95)
32 2edj_A Roundabout homolog 2; K 39.3 28 0.00095 24.8 3.5 24 288-314 21-44 (100)
33 3bj9_1 Immunoglobulin IOTA cha 39.1 25 0.00086 26.2 3.3 39 288-326 11-49 (116)
34 3qne_A Seryl-tRNA synthetase, 38.8 1.2E+02 0.004 31.0 9.1 89 114-206 17-105 (485)
35 3k81_A Single strand antibody 38.7 1.3E+02 0.0043 24.2 7.7 38 288-326 13-50 (127)
36 4frw_A Poliovirus receptor-rel 38.7 16 0.00054 28.2 2.2 34 288-321 12-45 (218)
37 2oi9_C V beta, T cell receptor 38.5 33 0.0011 26.6 4.0 33 289-325 15-47 (121)
38 1m1j_B Fibrinogen beta chain; 38.3 3.4E+02 0.012 27.7 14.2 34 133-166 118-151 (464)
39 3bfo_A Mucosa-associated lymph 37.3 21 0.0007 25.4 2.5 24 288-314 16-39 (91)
40 3eak_A NBBCII10-FGLA; antibody 37.1 75 0.0026 25.7 6.1 38 288-325 13-52 (137)
41 2k6i_A Uncharacterized protein 36.6 28 0.00094 26.7 3.2 28 166-193 21-48 (56)
42 2dq0_A Seryl-tRNA synthetase; 36.5 1.2E+02 0.004 30.2 8.5 100 103-205 2-102 (455)
43 2j8w_A Cytochrome C'; heme, ir 36.4 1.7E+02 0.0059 23.8 10.2 93 103-201 10-118 (129)
44 2ckn_A Basic fibroblast growth 36.4 72 0.0025 22.7 5.4 53 288-344 22-76 (95)
45 3v6i_A V-type ATP synthase sub 35.8 1.9E+02 0.0063 24.7 8.7 37 161-197 14-50 (187)
46 2ftc_H L13MT, MRP-L13, 39S rib 35.4 30 0.001 30.4 3.6 44 311-358 17-68 (148)
47 1vf7_A Multidrug resistance pr 35.0 1.4E+02 0.0048 27.7 8.3 44 180-228 82-125 (369)
48 3qyc_A VH domain of IGG molecu 34.8 85 0.0029 25.7 6.2 36 288-324 15-50 (146)
49 3na7_A HP0958; flagellar bioge 34.8 2.6E+02 0.0087 25.2 15.6 42 180-227 61-102 (256)
50 4b9q_A Chaperone protein DNAK; 34.5 2.5E+02 0.0087 28.2 10.7 17 125-141 506-522 (605)
51 2qhl_A Novel immune-type recep 34.3 1.2E+02 0.0042 22.5 6.5 51 288-342 12-66 (111)
52 3tpk_A Immunoglobulin heavy ch 34.0 71 0.0024 25.6 5.5 36 288-324 17-52 (136)
53 3k74_B Nanobody; immunoglobuli 33.9 37 0.0013 25.8 3.6 36 289-325 12-47 (115)
54 3rk3_E Complexin-1; snare prot 33.9 25 0.00086 27.5 2.6 21 238-258 31-51 (63)
55 2ftc_M Mitochondrial ribosomal 33.3 64 0.0022 26.5 5.2 46 109-185 10-55 (110)
56 3tnu_A Keratin, type I cytoske 32.7 2.1E+02 0.0072 23.7 10.2 15 121-135 1-15 (131)
57 1in0_A YAJQ protein, HI1034; a 32.7 15 0.00052 33.1 1.4 18 122-139 131-148 (163)
58 1mqv_A Cytochrome C'; four-hel 32.7 2E+02 0.0068 23.3 9.1 91 104-202 7-113 (125)
59 1f5n_A Interferon-induced guan 31.8 4.1E+02 0.014 27.4 11.9 83 185-273 493-582 (592)
60 3cx5_J Heavy chain (VH) of FV- 31.7 35 0.0012 26.4 3.2 37 289-325 14-50 (127)
61 3t0v_A Immunoglobulin variable 31.1 48 0.0016 26.1 3.9 38 288-326 13-50 (123)
62 3lss_A Seryl-tRNA synthetase; 30.7 3.7E+02 0.013 27.3 11.2 103 101-206 6-138 (484)
63 1m1j_C Fibrinogen gamma chain; 30.6 4.2E+02 0.014 26.4 11.6 75 185-267 47-128 (409)
64 1fo0_B Protein (BM3.3 T cell r 29.9 1.1E+02 0.0036 23.0 5.6 36 289-327 15-50 (112)
65 2p45_B Antibody CAB-RN05; seMe 29.4 55 0.0019 24.9 3.9 37 289-326 16-52 (123)
66 1xn7_A Hypothetical protein YH 29.3 56 0.0019 25.2 3.9 21 63-83 8-28 (78)
67 3tnu_B Keratin, type II cytosk 28.5 2.5E+02 0.0084 23.1 11.3 70 123-207 1-71 (129)
68 2yc1_A Single chain antibody f 28.4 40 0.0014 25.3 2.9 37 288-325 13-49 (117)
69 1kil_E Complexin I snare-compl 28.2 24 0.00083 26.5 1.6 20 238-257 28-47 (49)
70 2x1q_A Gelsolin nanobody; cont 28.2 72 0.0025 24.7 4.5 38 288-326 13-50 (127)
71 2wzp_D Camelid VHH5; baseplate 28.1 45 0.0015 25.4 3.2 37 288-325 13-49 (123)
72 3b9v_A Heavy chain variable do 27.9 44 0.0015 25.2 3.1 36 289-325 14-49 (120)
73 1oaq_L Light chain; antibody, 27.4 37 0.0013 25.8 2.6 40 288-327 13-52 (120)
74 3u6r_L Antibody 1:7 (light cha 27.2 1.2E+02 0.0042 24.6 5.9 36 288-326 13-48 (143)
75 1tvd_A T cell receptor, ES204 27.0 42 0.0014 25.1 2.8 36 289-326 14-49 (116)
76 2eo9_A Roundabout homolog 1; b 26.9 1.8E+02 0.0062 21.3 6.3 24 288-314 21-44 (118)
77 1qfw_M FV, antibody (anti beta 26.9 53 0.0018 24.3 3.3 36 289-327 15-50 (108)
78 1kxt_B Immunoglobulin VHH frag 26.6 71 0.0024 24.8 4.2 38 288-326 13-50 (127)
79 2h32_A Immunoglobulin IOTA cha 26.6 51 0.0018 25.7 3.3 39 288-326 13-51 (126)
80 1gqa_A Cytochrome C'; electron 26.6 2.6E+02 0.009 22.8 8.3 93 103-202 8-119 (130)
81 3bp6_B Programmed cell death 1 26.4 53 0.0018 25.9 3.4 27 288-314 15-43 (202)
82 1l2p_A ATP synthase B chain; a 26.2 1.8E+02 0.0061 20.7 6.8 27 166-192 4-30 (61)
83 3k3q_A Llama AA1 VHH domain; l 25.7 1.6E+02 0.0056 24.3 6.4 37 288-325 16-63 (151)
84 3m03_A ORC6, origin recognitio 25.7 30 0.001 28.5 1.9 23 70-94 2-24 (95)
85 1rjc_A 1D2L19, camelid heavy c 25.5 84 0.0029 25.1 4.5 37 288-325 13-49 (137)
86 2dq3_A Seryl-tRNA synthetase; 25.1 1.1E+02 0.0036 30.1 6.0 93 109-206 4-102 (425)
87 2e6p_A Obscurin-like protein 1 24.8 1.8E+02 0.0061 20.7 5.8 23 288-314 23-45 (104)
88 3r08_E T-cell surface glycopro 24.6 1E+02 0.0034 23.7 4.6 21 289-314 13-33 (82)
89 1sjv_A R9; camelids antibody, 24.6 71 0.0024 23.8 3.7 37 288-325 13-49 (114)
90 3v0a_C Llama antibody F12; bot 24.3 1.5E+02 0.0052 24.0 5.9 36 288-324 22-57 (152)
91 2nms_A CMRF35-like-molecule 1; 24.3 67 0.0023 25.0 3.6 44 281-326 4-51 (124)
92 1i8k_A Epidermal growth factor 23.9 63 0.0022 23.8 3.2 36 288-326 14-49 (107)
93 2f1m_A Acriflavine resistance 23.9 2.2E+02 0.0074 24.8 7.2 66 138-203 62-129 (277)
94 3auv_A SC-DSFV derived from th 23.8 1.1E+02 0.0037 26.0 5.1 44 333-377 218-271 (276)
95 1mqk_L Antibody 7E2 FV fragmen 23.4 63 0.0021 24.8 3.2 35 289-326 15-49 (120)
96 1jhl_L IGG1-kappa D11.15 FV (l 23.3 68 0.0023 23.5 3.3 36 288-326 14-49 (108)
97 1a2y_B IGG1-kappa D1.3 FV (hea 23.3 60 0.002 24.4 3.0 37 288-325 13-49 (116)
98 2q20_A VK1 O18/O8 germline lig 23.1 62 0.0021 24.0 3.1 36 288-326 16-51 (109)
99 2e27_L Anti-ciguatoxin antibod 22.8 65 0.0022 24.7 3.2 36 289-327 17-52 (119)
100 1i3g_L Antibody FV fragment; a 22.8 68 0.0023 23.9 3.2 36 288-326 17-52 (111)
101 4a0z_A Transcription factor FA 22.7 1.1E+02 0.0036 27.0 4.9 61 55-123 10-70 (190)
102 3iyk_A VP5; icosahedral virus; 22.6 6.9E+02 0.023 26.2 12.6 92 106-204 117-214 (526)
103 3r8s_S 50S ribosomal protein L 22.4 90 0.0031 25.6 4.2 46 109-185 14-59 (110)
104 3rrq_A Protein PD-1, programme 22.3 76 0.0026 24.7 3.6 35 289-325 15-49 (129)
105 1zvh_A Immunoglobulin heavy ch 22.2 52 0.0018 26.0 2.6 37 289-326 14-50 (134)
106 2k02_A Ferrous iron transport 22.1 73 0.0025 25.4 3.4 19 64-82 9-27 (87)
107 3g9a_B Minimizer; antibody com 22.1 2.3E+02 0.008 23.3 6.7 37 288-325 15-51 (139)
108 3r8s_J 50S ribosomal protein L 22.1 35 0.0012 29.8 1.7 45 309-357 12-64 (142)
109 1nko_A Sialic acid binding IG- 22.0 71 0.0024 24.3 3.3 31 289-320 20-55 (132)
110 1cpq_A Cytochrome C'; electron 22.0 2.4E+02 0.0081 23.1 6.6 94 103-202 8-118 (129)
111 2ol3_A BM3.3 T-cell receptor a 21.9 74 0.0025 25.6 3.5 35 289-325 14-48 (142)
112 1mqk_H Antibody 7E2 FV fragmen 21.8 86 0.003 24.1 3.8 36 289-325 14-49 (127)
113 3q5y_A TCR N15 beta; IG, T cel 21.7 78 0.0027 25.8 3.7 26 289-318 16-41 (240)
114 2hp4_A T-cell surface glycopro 21.7 2.1E+02 0.0071 21.6 5.9 29 289-319 14-42 (114)
115 2zjr_G 50S ribosomal protein L 21.6 34 0.0012 30.9 1.6 45 309-357 38-90 (174)
116 4f9l_D 20.1 anti-BTN3A1 antibo 21.5 56 0.0019 31.0 3.1 46 289-336 145-194 (259)
117 4dzb_B Vbeta2 (MAIT T cell rec 21.4 1.1E+02 0.0037 25.0 4.5 29 289-320 15-43 (246)
118 1u69_A Hypothetical protein; s 21.3 85 0.0029 27.1 4.0 27 335-362 44-70 (163)
119 1i4j_A 50S ribosomal protein L 21.3 89 0.003 25.6 3.9 46 109-185 14-59 (110)
120 3ry4_A Low affinity immunoglob 21.1 95 0.0032 23.6 3.8 49 288-343 17-66 (170)
121 3omz_A Human vdelta1 gamma del 21.1 1.3E+02 0.0044 25.0 4.9 34 289-325 16-49 (259)
122 1l2p_A ATP synthase B chain; a 20.9 2.3E+02 0.0079 20.1 5.8 24 165-188 14-37 (61)
123 3fpp_A Macrolide-specific effl 20.9 4.5E+02 0.015 23.5 9.9 29 145-173 71-99 (341)
124 2vyr_E Human single domain ant 20.8 83 0.0028 25.8 3.7 38 288-326 13-50 (153)
125 2oyp_A Hepatitis A virus cellu 20.5 84 0.0029 22.3 3.2 31 289-319 8-38 (109)
126 1u00_A HSC66, chaperone protei 20.5 4E+02 0.014 23.6 8.3 18 125-142 115-132 (227)
127 1j05_H T84.66 antibody, anti-C 20.2 62 0.0021 24.5 2.6 37 288-325 13-49 (121)
128 3nfj_J T cell receptor beta ch 20.1 92 0.0032 25.5 3.8 29 289-320 15-43 (245)
No 1
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=100.00 E-value=1.7e-63 Score=459.79 Aligned_cols=133 Identities=61% Similarity=1.069 Sum_probs=123.8
Q ss_pred hhhhcccCCceeeccccccCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccccccccccccCCCCcccceeeeEeec
Q 015554 271 KRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITY 350 (405)
Q Consensus 271 kr~~en~~~~yeLeG~e~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsGAtk~~YAPEP~DVGr~LqadI~~ 350 (405)
.+.++|.+++|+|+|+|+|||+|+|+||+|++||||+|+|||||+++||||+|+|||||||+||||||||||+|||||++
T Consensus 5 ~~~e~n~~~~y~L~G~e~LGs~L~i~~~~~~~~dlS~CsiQW~R~~~egs~re~IsGAtk~~YAPeP~DVGrlLqadi~~ 84 (230)
T 4dix_A 5 SKSEENISLVYEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIY 84 (230)
T ss_dssp --------CCEEEESCCBTTSCEEEEESSTTSCCGGGSEEEEEEECTTSSSEEECTTCCSSEECCCGGGBTSEEEEEEEE
T ss_pred cccccCCCcceeecchhhccceEEEEeccCCCCcccccceEEEEeecCCCceeEEeccccccccCCccccccEEEEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCCCCCchhHHHHHhhcCCceeeEeecCC----CCCCcccccccc
Q 015554 351 NGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVRAPPQ----HPPPQHHFQDFT 403 (405)
Q Consensus 351 ~g~k~~~~T~GPidpaaGL~~yVEaL~rk~~tEFNVvi~Q~----~~~~s~hv~~~~ 403 (405)
||++++++|+|||||||||++|||+|+||+++||||||+|| |+++|+||+|..
T Consensus 85 ~G~k~t~~T~gpId~a~GL~~yVEaL~rk~~tEFNVvv~q~nG~d~~s~sihvl~vg 141 (230)
T 4dix_A 85 DGHSLSLSTVGKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVG 141 (230)
T ss_dssp TTEEEEEEEEEEBBCCTTHHHHHHHHHTTSEEEEEEEEEEETTEECCCCCEEEEEEE
T ss_pred CCcEEEEEecCCCCCCchhHHHHHHHhhcCCCcEEEEEEEEcCccCccceEEEEEec
Confidence 99999999999999999999999999999999999999999 999999999865
No 2
>4djg_A Plectin-related protein; coiled-coil, four helix bundle, dimerization, cytosolic, Pro binding; 1.90A {Arabidopsis thaliana}
Probab=99.95 E-value=4.9e-29 Score=187.32 Aligned_cols=52 Identities=98% Similarity=1.230 Sum_probs=48.6
Q ss_pred hhhhchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhh
Q 015554 100 AASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE 151 (405)
Q Consensus 100 va~Ler~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~E 151 (405)
+|+||||+||||||++||+|||||||||||||||||||||||||||||||+|
T Consensus 1 ~a~Ler~vLlKkLr~~Le~L~GRvaGrnkddveeaismVealavqltqrE~E 52 (52)
T 4djg_A 1 ATSLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE 52 (52)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred CcchhHHHHHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5899999999999999999999999999999999999999999999999997
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.78 E-value=0.55 Score=56.91 Aligned_cols=139 Identities=14% Similarity=0.152 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 015554 129 DDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASED---AKKLVDEERAFARAEIESARAAVQRVEESLQEH 205 (405)
Q Consensus 129 ddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeD---AkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eq 205 (405)
+-+.+|-.-|+.|-.+|+..+-+|.+.+.|..++-.-+...+.+ -|+.|+++.+.+..+-+.+.+--..+++-|.+-
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A 2006 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA 2006 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34678899999999999999999999988888765555443333 344555444443332222222222233333322
Q ss_pred HHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 015554 206 EQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMS 270 (405)
Q Consensus 206 e~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~eKs~~~v~L~KEL~~~ 270 (405)
+-. .-.+++++++.++..+|.. ++-..=.++-+.|.+|..|+.++.+...+.-.|+.|++.+
T Consensus 2007 ~Pa--~Pkr~~l~~ae~~l~~~~~-~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~ 2068 (3245)
T 3vkg_A 2007 EPT--GPLREEVEQLENAANELKL-KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKV 2068 (3245)
T ss_dssp ------CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC--ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 2223355555555544432 1111123455678899999999999988888888887643
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.62 E-value=2.6 Score=46.18 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHHH
Q 015554 185 RAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLR 264 (405)
Q Consensus 185 ~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~eKs~~~v~L~ 264 (405)
..|.+++.+-|..+++-+++.+...+...+ +.+.|.++.++.. .-|+ .||-.|+.|...||+|+.+-........
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~k-e~~~lee~~~~~~--~~L~--~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQT-EKKTIEEWADKYK--HETE--QLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544433332 2333333322222 1333 8899999999999999988776555555
Q ss_pred HH
Q 015554 265 KE 266 (405)
Q Consensus 265 KE 266 (405)
++
T Consensus 1051 ~~ 1052 (1080)
T 2dfs_A 1051 KE 1052 (1080)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 5
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=85.97 E-value=8.1 Score=32.17 Aligned_cols=79 Identities=19% Similarity=0.387 Sum_probs=48.0
Q ss_pred HHHhhHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCcccccc
Q 015554 166 LKKASEDAKKLVD---EERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDM 242 (405)
Q Consensus 166 lKqASeDAkkiV~---eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDM 242 (405)
+..--.|.|+-++ .+++....||.+++.++..+..-+++.-.. +.+-..|+..|++.|.++-=.| +|+
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~-r~~~E~di~~lrK~lD~~~l~r--------~dL 88 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ-REEAENTLQSFRQDVDNASLAR--------LDL 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHhhhcccHHHHHH--------HHH
Confidence 3334456666554 477888889999999998888777654332 2222235666666666553333 355
Q ss_pred HHHHHHHHHHH
Q 015554 243 EHELRALRIQL 253 (405)
Q Consensus 243 E~El~~LR~ql 253 (405)
|..|++|+..|
T Consensus 89 E~~iesL~eEl 99 (119)
T 3ol1_A 89 ERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66565555544
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.47 E-value=40 Score=32.70 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=21.6
Q ss_pred cccHHHHHHHHHHHHHHhHHHHHHHHHHH-Hhhhhhccc
Q 015554 240 MDMEHELRALRIQLAEKSKCSLLLRKELA-MSKRIEEKL 277 (405)
Q Consensus 240 MDME~El~~LR~ql~eKs~~~v~L~KEL~-~~kr~~en~ 277 (405)
..||..++.-++++.|-..+--++.+|+. +.....+|.
T Consensus 547 ~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 547 IALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34566666666666666666666666664 444455444
No 7
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=78.27 E-value=8.5 Score=30.67 Aligned_cols=67 Identities=18% Similarity=0.353 Sum_probs=49.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHH
Q 015554 178 DEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQL 253 (405)
Q Consensus 178 ~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql 253 (405)
..+++....||.+++.++..+..-+++.-..-+..+ -|+-.|++.|.+|-=.| +|+|..|.+|...|
T Consensus 13 ~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E-~d~~~LrkdvD~a~l~r--------~dLE~kvesL~eEl 79 (86)
T 3swk_A 13 TNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAE-NTLQSFRQDVDNASLAR--------LDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 357888889999999999999888876544444333 37888888888876554 57777777776655
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.96 E-value=43 Score=30.33 Aligned_cols=177 Identities=11% Similarity=0.174 Sum_probs=93.6
Q ss_pred HHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHhHHHHHHHH
Q 015554 114 DALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAK--KLVDEERAFARAEIESA 191 (405)
Q Consensus 114 ~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAk--kiV~eERa~A~aEIE~A 191 (405)
.-|+.|...+++- ++.++.+-.-++-+..+..+.|.++-+-+.-+++.-.-|..++ +.| .-+..|-.++..+|..+
T Consensus 32 ~el~~le~~~~~l-~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~l 109 (256)
T 3na7_A 32 KDLDKALNDKEAK-NKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQA 109 (256)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333332 3456666677778888888888888888888888888777665 222 22334444555555555
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhH-HHHHHHHHHHHh
Q 015554 192 RAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSK-CSLLLRKELAMS 270 (405)
Q Consensus 192 rAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~eKs~-~~v~L~KEL~~~ 270 (405)
..-++.+.+.+++.+...... +..++.+..++.+++.=- =..+-+.+-++..|+.+..+-.. .--.|.+.-..+
T Consensus 110 E~eile~~e~ie~~~~~l~~~-~~~l~~~~~~l~~~~~~~----~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yeri 184 (256)
T 3na7_A 110 NREIENLQNEIKRKSEKQEDL-KKEMLELEKLALELESLV----ENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERI 184 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 555555555555444332222 124444444444333200 00112233334433333322211 122444554555
Q ss_pred hhhhcccCCceeeccccccCcceeEeeC
Q 015554 271 KRIEEKLSDSYELDGSEALGSYLRIKPC 298 (405)
Q Consensus 271 kr~~en~~~~yeLeG~e~LGS~L~i~~~ 298 (405)
++.. +..+.=.+.|--|-|..+.|.|.
T Consensus 185 r~~~-~g~avv~v~~~~C~GC~~~lppq 211 (256)
T 3na7_A 185 RRWA-KNTSIVTIKKQACGGCFIRLNDK 211 (256)
T ss_dssp HHHH-GGGSEEECBTTBCTTTCCBCCHH
T ss_pred HHhC-CCceEEEeeCCccCCCCeeeCHH
Confidence 5433 44577778888888888888775
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=71.20 E-value=1e+02 Score=38.13 Aligned_cols=28 Identities=11% Similarity=0.167 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHhcccchhHhHHHhhhch
Q 015554 53 SMKEVVARETAQLLEQQKRLSVRDLANKFEKGL 85 (405)
Q Consensus 53 slKEvVakEta~L~~q~kRLSVRDLA~KFEKgl 85 (405)
+.++.|..=-+.. | .||.+++.+|=+.+
T Consensus 1859 ~~~~~~~~~~~~i---H--~sv~~~s~~~~~~~ 1886 (3245)
T 3vkg_A 1859 SHRDAVVSSLVYI---H--QTIGEANIRLLKRQ 1886 (3245)
T ss_dssp CHHHHHHHHHHHH---H--HHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHH---H--HHHHHHHHHHHHHh
Confidence 4555555433322 2 47788887776554
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=67.07 E-value=95 Score=30.09 Aligned_cols=26 Identities=38% Similarity=0.317 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015554 243 EHELRALRIQLAEKSKCSLLLRKELA 268 (405)
Q Consensus 243 E~El~~LR~ql~eKs~~~v~L~KEL~ 268 (405)
|.|+..|+.++.+.-.....|++|++
T Consensus 543 ~~~~~~le~~~~~~~~~~~~l~~e~~ 568 (597)
T 3oja_B 543 EQENIALEKQLDNKRAKQAELRQETS 568 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhhhHHHHHHHHHH
Confidence 34555555555555544444554443
No 11
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=62.09 E-value=62 Score=30.76 Aligned_cols=86 Identities=21% Similarity=0.232 Sum_probs=44.8
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcc----------cHHHHHHHHHHH-Hhhhh
Q 015554 164 DFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQ----------DFEELMKEVQEA-RRIKM 232 (405)
Q Consensus 164 ~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kq----------d~e~L~~EVqEA-RRIKm 232 (405)
..|+.|.+...+++++-++.+ |+++.++. +++-|.|-.+.....++| =++-|.++|-.+ .||+
T Consensus 373 eal~~~~~~i~~~l~~~~~~~--e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 446 (471)
T 3mq9_A 373 EALKDAQTRITAARDGLRAVM--EARNVTHL---LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVE- 446 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhhHHHH--HhhhHHHH---HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHH-
Confidence 345666666666666554443 44443333 333444444443333333 234555555332 2444
Q ss_pred ccCCccccccHHHHHHHHHHHHHHhHHHHHH
Q 015554 233 LHQPSKVMDMEHELRALRIQLAEKSKCSLLL 263 (405)
Q Consensus 233 LH~PSKvMDME~El~~LR~ql~eKs~~~v~L 263 (405)
..|.||..|-.+|.+-+...-.+
T Consensus 447 --------~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 447 --------ELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888887777766655443
No 12
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=61.05 E-value=39 Score=36.97 Aligned_cols=8 Identities=38% Similarity=0.816 Sum_probs=4.4
Q ss_pred CcccCCCC
Q 015554 33 NYKIGANN 40 (405)
Q Consensus 33 ~Yk~g~n~ 40 (405)
.|++|-.-
T Consensus 765 ~~~iG~TK 772 (1184)
T 1i84_S 765 LYRIGQSK 772 (1184)
T ss_dssp TCCBCSSE
T ss_pred ceeEcCeE
Confidence 46666543
No 13
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=60.79 E-value=51 Score=32.26 Aligned_cols=40 Identities=18% Similarity=0.432 Sum_probs=27.8
Q ss_pred cCCeEEEEeecCC---------CCCCCCch-hHHHHHhh------cCCceeeEeec
Q 015554 350 YNGQQITLTTTGA---------VDPAPGLG-SYVEALVR------KHDVEFHVRAP 389 (405)
Q Consensus 350 ~~g~k~~~~T~GP---------idpaaGL~-~yVEaL~r------k~~tEFNVvi~ 389 (405)
++|.-.+|++-|. ..|.+|+- .-++.|++ ..+.+|.|.++
T Consensus 137 l~G~N~tifAYGqTGSGKTyTM~g~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS 192 (403)
T 4etp_A 137 LDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAE 192 (403)
T ss_dssp HTTCCEEEEEESCTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHHTTTEEEEEEEE
T ss_pred hCCcceEEEEECCCCCCCceEeCCCCCccchhHHHHHHHHHHhhhccCceEEEEEE
Confidence 6899999998776 23456764 45677764 35678888764
No 14
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=60.00 E-value=67 Score=28.77 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=9.7
Q ss_pred CCChhhHHHHHHHHHHH
Q 015554 125 GRNKDDVEEAIAMVEAL 141 (405)
Q Consensus 125 GrnKddveeaismVeaL 141 (405)
|-++++|+..+.--+.+
T Consensus 118 ~Ls~eeI~~m~~~a~~~ 134 (219)
T 4e81_A 118 GLNEDEIQKMVRDAEAN 134 (219)
T ss_dssp SCCHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHh
Confidence 45666776665544443
No 15
>3lh2_H FV 4E10 heavy chain; epitope-scaffold, immune system; 2.65A {Homo sapiens} PDB: 3h3p_H 3lhp_H 2xtj_D
Probab=56.40 E-value=29 Score=28.33 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=36.4
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccccc--cccccccCCCCcccceeeeEeecCCeEEEEee
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISG--ATKSVYAPEPFDVGRILQAEITYNGQQITLTT 359 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsG--Atk~~YAPEP~DVGr~LqadI~~~g~k~~~~T 359 (405)
.|..+.|...... .+++.-.+.|||..+.++-+-||.- .....+-++.|. ||+ .+.....+...+|+-
T Consensus 16 ~G~sVtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~~~~~-~Rf-s~~~~~~~~~~sLtI 85 (137)
T 3lh2_H 16 PGSSVTVSCKASG-GSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQ-GRI-TITADRSTSTAYLEL 85 (137)
T ss_dssp SSCCEEEEEEEES-SCSTTSCEEEEEECTTCCCEEEEEEEGGGTEEEECTTTT-TTE-EEEEETTTTEEEEEE
T ss_pred CCCCEEEEEEecC-CcccccEEEEEEECCCCCCEEEEEEEcCCCccccCcccC-CcE-EEEecCCCCEEEEEE
Confidence 4777776554332 2445678999999885555555541 233334444554 765 232222334444433
No 16
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=55.17 E-value=99 Score=27.40 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHH-hhHHHHHHHHHHHHhHHHHHHHHH
Q 015554 156 KAEVKKLADFLKK-ASEDAKKLVDEERAFARAEIESAR 192 (405)
Q Consensus 156 K~EVkKlA~~lKq-ASeDAkkiV~eERa~A~aEIE~Ar 192 (405)
..+++||.+|..| |-+-|..|..+.... ++|+.++
T Consensus 14 ~~~i~~m~~fI~qEA~eKA~EI~~kAeeE--~~~ek~~ 49 (233)
T 4efa_E 14 NDELNKMQAFIRKEAEEKAKEIQLKADQE--YEIEKTN 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 4678999999876 888888887665544 4444444
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=53.63 E-value=2.5e+02 Score=30.99 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=14.6
Q ss_pred cHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHH
Q 015554 216 DFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRI 251 (405)
Q Consensus 216 d~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ 251 (405)
.+..|.+|.+..|. .+-|||..+...-+
T Consensus 1024 kv~~L~~e~~~L~q--------q~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1024 LVSELKEQNTLLKT--------EKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 44556666666664 34455544444433
No 18
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=52.52 E-value=42 Score=30.24 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=24.5
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 015554 144 QLTQREGELIQEKAEVKKLADFLKK--ASEDAKKLVDEERAFARAEIESARAAVQRVEESL 202 (405)
Q Consensus 144 qltqrE~ELiQeK~EVkKlA~~lKq--ASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al 202 (405)
+|.+-+.++-.-+.+..+...++++ +|...-.-...+...|+++++.+++.+...+..|
T Consensus 84 ~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l 144 (341)
T 3fpp_A 84 QRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASL 144 (341)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555543 2221111122233344455555555444444333
No 19
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=51.02 E-value=68 Score=31.32 Aligned_cols=66 Identities=15% Similarity=0.232 Sum_probs=50.7
Q ss_pred HHhHHhhhhchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHH
Q 015554 95 AKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAK 174 (405)
Q Consensus 95 aK~reva~Ler~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAk 174 (405)
..|+....=||..+|+++.++|+ .|+|++-++++. .=|.+..+..||...+..+.....-+.
T Consensus 42 ~~W~~~~~~~R~~~L~~~a~~l~--------~~~~ela~~~~~----------e~Gk~~~~~~ev~~~~~~~~~~~~~~~ 103 (474)
T 4h7n_A 42 SRWQELGVEGRITTLQQWKQAIL--------SRREQLTEALVN----------DTGRLSITVLEIDSFLASIDRWCGLAP 103 (474)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHH--------TTHHHHHHHHHH----------HHSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH----------HcCCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 35898888999999999999998 477887766553 224466677889998888888777776
Q ss_pred HHHH
Q 015554 175 KLVD 178 (405)
Q Consensus 175 kiV~ 178 (405)
++..
T Consensus 104 ~~~~ 107 (474)
T 4h7n_A 104 ELLQ 107 (474)
T ss_dssp HHHC
T ss_pred hccc
Confidence 6653
No 20
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=50.75 E-value=4.1 Score=41.62 Aligned_cols=124 Identities=26% Similarity=0.372 Sum_probs=34.3
Q ss_pred HhhhHHHHhHHhhhhchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhh--hhhhhHHHHH-HHHHHHHH
Q 015554 89 AKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQ--REGELIQEKA-EVKKLADF 165 (405)
Q Consensus 89 akLs~EaK~reva~Ler~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltq--rE~ELiQeK~-EVkKlA~~ 165 (405)
.+|+.|-+.|+.|-=++..|-.+|+..=+..+ +..+++.++-.+.+-|+-++-+ .|.+++..|+ |..-.-.-
T Consensus 321 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~ 395 (575)
T 2i1j_A 321 EKLQLEIAARERAEKKQQEYQDRLRQMQEEME-----RSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQR 395 (575)
T ss_dssp TTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888877776665 3456666666666666655433 3333333332 12111122
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHh
Q 015554 166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARR 229 (405)
Q Consensus 166 lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARR 229 (405)
|...+++ -.+||..-.+++..+.+-+.|+.++.+..+. +.+.|++++++||+
T Consensus 396 l~~~~~~----~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~--------e~~~~~~~~~~a~~ 447 (575)
T 2i1j_A 396 LEETKNM----EAAERQKLEDEIRAKQEEVSRIQQEVELKDS--------ETRRLQEEVEDARR 447 (575)
T ss_dssp ----------------------------------------------------------CHHHHH
T ss_pred HHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 2222222 2455555566666666666776665554433 34445555555544
No 21
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=48.33 E-value=45 Score=30.32 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=5.7
Q ss_pred CcccceeeeEee
Q 015554 338 FDVGRILQAEIT 349 (405)
Q Consensus 338 ~DVGr~LqadI~ 349 (405)
+=.|....+.|.
T Consensus 279 l~~Gm~~~v~i~ 290 (369)
T 4dk0_A 279 LRIGMTTENNIK 290 (369)
T ss_dssp CCTTCEEEEECC
T ss_pred ccCCcEEEEEEE
Confidence 334555555554
No 22
>3k1k_C Enhancer; nanobody, antibody-complex, chromophore, luminescence, photoprotein, luminescent protein/immune system complex; HET: GYS; 2.15A {Lama pacos} SCOP: b.1.1.1 PDB: 3miq_E* 3ogo_E*
Probab=47.95 E-value=57 Score=25.63 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=23.4
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
..|..+.|...... .+.+.-.+.|||..+.++-+-|+.
T Consensus 15 ~~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l~~ 52 (123)
T 3k1k_C 15 QPGGSLRLSCAASG-FPVNRYSMRWYRQAPGKEREWVAG 52 (123)
T ss_dssp CTTCCEEEEEEEES-SCTTTSCEEEEEECSSSCCEEEEE
T ss_pred CCCCCEEEEEEeeC-CcccccEEEEEEECCCCCCEEEEE
Confidence 35777777654332 235667899999988544444443
No 23
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.96 E-value=21 Score=25.57 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=17.2
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEE
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYR 314 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyR 314 (405)
..|..+.+.....+.|. -.|+|||
T Consensus 23 ~~G~~v~l~C~~~g~p~---~~v~W~k 46 (96)
T 2ens_A 23 APGGTVTLTCEVPAQPS---PQIHWMK 46 (96)
T ss_dssp CTTCEEEEECCCSSCSS---CCCCCEE
T ss_pred cCCCeEEEEEEEccCCC---CEEEEEE
Confidence 46777888766555555 3799999
No 24
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer, immunoglobulin superfamily (beta S fold, receptor, signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Probab=45.77 E-value=26 Score=27.42 Aligned_cols=38 Identities=3% Similarity=-0.136 Sum_probs=23.2
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 325 (405)
..|..+.|...-......+.-.+.|||..+.++-.-+|
T Consensus 14 ~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~ 51 (130)
T 3osk_A 14 SSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCA 51 (130)
T ss_dssp CTTSCEEEEEEECCCSSCCEEEEEEEEEETTEEEEEEE
T ss_pred eCCCeEEEEEEecCCCCCceEEEEEEEeCCCCCcEEEE
Confidence 45777777655444333455679999998743333333
No 25
>3r0m_A Llama VHH A12; IG domain, immune system; 1.50A {Lama glama} PDB: 3rjq_B* 1g9e_A 1hcv_A 1shm_A 3qxw_A 3qxv_A
Probab=43.93 E-value=62 Score=26.58 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=22.8
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccc
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 325 (405)
.|..+.|...... .+.+...+.|||..+..+-.-|+
T Consensus 14 ~G~svtL~C~~s~-~~~~~~~v~WyrQ~pg~~~~~L~ 49 (143)
T 3r0m_A 14 AGGSLRLSCTASG-RISSSYDMGWFRQAPGKEREFVA 49 (143)
T ss_dssp TTCCEEEEEEESS-CCCTTEEEEEEEECTTSCCEEEE
T ss_pred cCCCEEEEEEeeC-CCcCCcEEEEEEECCCCCCEEEE
Confidence 5777777554332 24567789999998854444443
No 26
>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A
Probab=42.81 E-value=26 Score=26.40 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=22.1
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
.|..+.|........ +.-.|.|||..+.++-.-+|.
T Consensus 15 ~G~~v~L~C~~~~~~--~~~~v~W~rq~~~~~~~~l~~ 50 (115)
T 2otu_A 15 LGASAKLTCTLSSQH--STYTIEWYQQQPLKPPKYVME 50 (115)
T ss_dssp TTCCEEEEEEECGGG--TTCCEEEEEECTTSCCEEEEE
T ss_pred CCCCEEEEEEecCCC--CCeEEEEEEeCCCCCceEEEE
Confidence 567776655434322 456799999987554444543
No 27
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=42.64 E-value=1.4e+02 Score=24.40 Aligned_cols=10 Identities=10% Similarity=0.106 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 015554 244 HELRALRIQL 253 (405)
Q Consensus 244 ~El~~LR~ql 253 (405)
.++..++.++
T Consensus 174 ~~~~~~~~~~ 183 (284)
T 1c1g_A 174 SDLERAEERA 183 (284)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 28
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=42.43 E-value=38 Score=27.67 Aligned_cols=44 Identities=32% Similarity=0.388 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHHhhhhccCCccccccHH--------------HHHHHHHHHHHHhHHHHHHHHHH
Q 015554 216 DFEELMKEVQEARRIKMLHQPSKVMDMEH--------------ELRALRIQLAEKSKCSLLLRKEL 267 (405)
Q Consensus 216 d~e~L~~EVqEARRIKmLH~PSKvMDME~--------------El~~LR~ql~eKs~~~v~L~KEL 267 (405)
|-|+|..||++-| .||=+||+ ||..|+.|+..|-.+.-.|+-+|
T Consensus 20 ~~E~L~qEi~~Lr--------~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 20 KAEELLQELRHLK--------IKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6678888888876 36677775 68888999998888888887776
No 29
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle; HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB: 3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A* 2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A* 2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Probab=41.95 E-value=1.4e+02 Score=24.26 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=61.2
Q ss_pred hchHHHHHHHHHHHHHhhcccCCC---ChhhHHHHHHHHHHHHHHhhhh--h--------hhhHHHHHHHHHHHHHHHHh
Q 015554 103 LEKHVLLKKLRDALESLRGRVAGR---NKDDVEEAIAMVEALAVQLTQR--E--------GELIQEKAEVKKLADFLKKA 169 (405)
Q Consensus 103 Ler~vLLKkLR~~LesLrGRvaGr---nKddveeaismVeaLavqltqr--E--------~ELiQeK~EVkKlA~~lKqA 169 (405)
=+|+.++|.++..+..|.+=+-|. +.+.|..+...+..++..+..- + -++-++..+.+.++.-|..|
T Consensus 10 ~~Rq~~m~~m~~~~~~l~~m~kg~~~~d~~~~~~~A~~l~~~a~~~~~~F~~gs~~~~A~p~IW~~~~~F~~~~~~~~~a 89 (127)
T 2ykz_A 10 KYRQSALTLMASHFGRMTPVVKGQAPYDAVQIKANVEVLKTLSALPWAAFGPGTEGGDARPEIWSDAASFKQKQQAFQDN 89 (127)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHTTSSCCCHHHHHHHHHHHHHHHTSSGGGSCTTCCCTTBCTHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhhhhHhhCCCCCCCcccCHHHHhCHHHHHHHHHHHHHH
Confidence 368899999999999999999999 4455666666665555444220 0 12345778888888888877
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 015554 170 SEDAKKLVDEERAFARAEIESARAAVQRVEESL 202 (405)
Q Consensus 170 SeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al 202 (405)
......... .. ..+..++++..|++.-
T Consensus 90 a~~l~~aA~---~g---D~~~~~~a~~~v~~sC 116 (127)
T 2ykz_A 90 IVKLSAAAD---AG---DLDKLRAAFGDVGASC 116 (127)
T ss_dssp HHHHHHHHH---HT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---cC---CHHHHHHHHHHHHHHH
Confidence 665533321 11 2455666777766543
No 30
>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}
Probab=41.46 E-value=30 Score=26.46 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=23.2
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKREL 324 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~ 324 (405)
.+|+...+...-...++.+.-.|.|||..+.+....+
T Consensus 13 ~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~ 49 (123)
T 4gjt_B 13 VLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQEL 49 (123)
T ss_dssp CTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEE
T ss_pred EcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCccee
Confidence 3577666644334445555567999999875554443
No 31
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=39.96 E-value=96 Score=21.88 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=30.7
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEec--CCCCccccccccccccccCCCCcccceee
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVP--SEGGKRELISGATKSVYAPEPFDVGRILQ 345 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~--~~gsk~E~IsGAtk~~YAPEP~DVGr~Lq 345 (405)
..|+.+.+.....+. -.|.||+-. ...+.+-.+++.+=.+....+-|-|.|-=
T Consensus 14 ~~G~~~~l~C~~~~~-----p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 68 (95)
T 4hwu_A 14 APGESLELQCMLKDA-----AVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYAC 68 (95)
T ss_dssp CTTSCEEEECCCCTT-----CEEEEEETTEEECCCSSEEEETTEEEECSCCGGGCEEEEE
T ss_pred CCCCEEEEEEEeCCC-----CEEEEEECCEECCCCceEEEeCCEEEECcCCcccCEEEEE
Confidence 357777777655542 489999821 11223333444444556667778887753
No 32
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.29 E-value=28 Score=24.83 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=15.9
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEE
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYR 314 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyR 314 (405)
..|+.+.+.....+.|.. .|.|||
T Consensus 21 ~~G~~~~l~C~~~g~p~p---~v~W~~ 44 (100)
T 2edj_A 21 AVDGTALLKCKATGDPLP---VISWLK 44 (100)
T ss_dssp ESSSEEEECCEEECSSCC---EEEEEE
T ss_pred cCCCcEEEEEEEEEcCCC---EEEEEE
Confidence 357777776555555543 499999
No 33
>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A
Probab=39.09 E-value=25 Score=26.24 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=24.1
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
..|..+.|........+.+.-.+.|||..+.++-.-+|.
T Consensus 11 ~~G~~v~L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~~ 49 (116)
T 3bj9_1 11 ALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLR 49 (116)
T ss_dssp ETTCCEEEEEEECSSSCGGGCCEEEEEECTTSCCEEEEE
T ss_pred cCCCcEEEEEEeecCccCCCceEEEEEeCCCCCcEEEEE
Confidence 356667665554433344567899999987544444543
No 34
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=38.77 E-value=1.2e+02 Score=30.96 Aligned_cols=89 Identities=25% Similarity=0.163 Sum_probs=54.1
Q ss_pred HHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 015554 114 DALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARA 193 (405)
Q Consensus 114 ~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArA 193 (405)
.+-++|+-| |-+.++|++-+++-+ --.++.++=.+|-.++-++.|--.-+|.+-+|+..+..+-+ .-..+|....+
T Consensus 17 ~v~~~~~~R--~~~~~~~~~~~~ld~-~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~-~l~~~i~~le~ 92 (485)
T 3qne_A 17 IIKASQKKR--GDSVELVDEIIAEYK-EWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKE-KLSNEKKEIIE 92 (485)
T ss_dssp HHHHHHHHH--TCCSHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH-HHHHHHHHHHH
Confidence 344555555 233445776666533 34444444455555666665544456777788877777655 44677888888
Q ss_pred HHHHHHHHHHHHH
Q 015554 194 AVQRVEESLQEHE 206 (405)
Q Consensus 194 aV~Rve~al~Eqe 206 (405)
.+..+++.|++.-
T Consensus 93 ~~~~~~~~~~~~l 105 (485)
T 3qne_A 93 KEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777543
No 35
>3k81_A Single strand antibody VHH domain; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Lama glama}
Probab=38.70 E-value=1.3e+02 Score=24.19 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=24.9
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
..|..+.|...... .+.+...+.|||..+..+-+-||.
T Consensus 13 ~~G~~VtL~C~~s~-~~~~~~~v~WyrQ~pg~~~~~L~~ 50 (127)
T 3k81_A 13 QAGGSLRLSCVVSG-ITFASEAWGWYRRAPGKQRELIAA 50 (127)
T ss_dssp CBTCEEEEEEBCSC-CCCSSSCEEEEEECSSSCEEEEEE
T ss_pred ccCCCEEEEEEecC-CCccCcEEEEEEECCCCCCEEEEE
Confidence 45777777655433 356678899999988544444443
No 36
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=38.66 E-value=16 Score=28.21 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=22.1
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGK 321 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk 321 (405)
.+|+.+.+...-.+.|+-..-.|+|||-......
T Consensus 12 ~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~ 45 (218)
T 4frw_A 12 VLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGA 45 (218)
T ss_dssp ETTSCEEECCEECCCTTCEEEEEEEEEECSSSCE
T ss_pred EcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCc
Confidence 3577777765555556555557999997654433
No 37
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C
Probab=38.51 E-value=33 Score=26.62 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=20.3
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccc
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 325 (405)
.|..+.|... ++.+.-.|.|||..+.++-.-++
T Consensus 15 ~G~~vtL~C~----~~~~~~~v~W~rq~~g~~~~~l~ 47 (121)
T 2oi9_C 15 TGEKVTLSCN----QTNNHNNMYWYRQDTGHELRLIY 47 (121)
T ss_dssp TTCCEEEEEE----ESSCCSEEEEEEESSSSCCEEEE
T ss_pred CCCcEEEEEE----ecCCCCeEEEEEECCCCCcEEEE
Confidence 4666666444 23356789999998754444344
No 38
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=38.27 E-value=3.4e+02 Score=27.67 Aligned_cols=34 Identities=6% Similarity=0.074 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 015554 133 EAIAMVEALAVQLTQREGELIQEKAEVKKLADFL 166 (405)
Q Consensus 133 eaismVeaLavqltqrE~ELiQeK~EVkKlA~~l 166 (405)
++.-.|.+|-+.|.++|..+..-..-|++....|
T Consensus 118 ~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~ 151 (464)
T 1m1j_B 118 TMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEM 151 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 4555778888888888876655554455555444
No 39
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=37.34 E-value=21 Score=25.37 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=15.8
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEE
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYR 314 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyR 314 (405)
..|+.+.+.....+.|.. .|+|||
T Consensus 16 ~~G~~~~l~C~~~g~p~p---~i~W~~ 39 (91)
T 3bfo_A 16 MPGSTLVLQCVAVGSPIP---HYQWFK 39 (91)
T ss_dssp CTTSCEEEECEEECSSCC---EEEEEE
T ss_pred cCCCcEEEEEEeccCCCC---EEEEEc
Confidence 356667666555555543 899999
No 40
>3eak_A NBBCII10-FGLA; antibody, nanobody, humanization, VHH domain, immune system; 1.95A {Camelus dromedarius} SCOP: b.1.1.1
Probab=37.08 E-value=75 Score=25.68 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=23.3
Q ss_pred ccCcceeEeeCCCCC--CCCCCcceeEEEecCCCCccccc
Q 015554 288 ALGSYLRIKPCSNNG--PELSKCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~--~dlSkcsiQWyRv~~~gsk~E~I 325 (405)
..|..+.|....... ++.+.-.+.|||..+..+-+-|+
T Consensus 13 ~~G~~vtL~C~~s~~~~~~~~~~~v~WyrQ~pg~~~~~L~ 52 (137)
T 3eak_A 13 QPGGSLRLSCAASGGSEYSYSTFSLGWFRQAPGQGLEAVA 52 (137)
T ss_dssp CTTCCEEEEEEEESCTTSCGGGSEEEEEEECTTSCEEEEE
T ss_pred CCCCCEEEEeEecCCccccccCcEEEEEEECCCCCCEEEE
Confidence 346777776543322 14566789999998854444443
No 41
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=36.64 E-value=28 Score=26.70 Aligned_cols=28 Identities=29% Similarity=0.213 Sum_probs=22.0
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 015554 166 LKKASEDAKKLVDEERAFARAEIESARA 193 (405)
Q Consensus 166 lKqASeDAkkiV~eERa~A~aEIE~ArA 193 (405)
+|.|-.+|+++|++....|..=|+.||.
T Consensus 21 IKeAE~~A~~iVeeA~~ea~~ii~eAre 48 (56)
T 2k6i_A 21 VKLAEEQAVKEIEEAKNRAEQIKAEAIE 48 (56)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888777777775
No 42
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=36.46 E-value=1.2e+02 Score=30.23 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=50.9
Q ss_pred hchHHHHHHHHHHHHHhhcccCCCC-hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 015554 103 LEKHVLLKKLRDALESLRGRVAGRN-KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEER 181 (405)
Q Consensus 103 Ler~vLLKkLR~~LesLrGRvaGrn-KddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eER 181 (405)
|+-..+..+.-.+-++|+-|-.. + -+.|++-+++-+- -.++.++=.+|-.++-++.|--.-+|...+|+..+..+-+
T Consensus 2 ld~~~~r~n~~~~~~~~~~R~~~-~~~~~~~~~~~l~~~-~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~ 79 (455)
T 2dq0_A 2 LDIKLIRENPELVKNDLIKRGEL-EKVKWVDEILKLDTE-WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSR 79 (455)
T ss_dssp CCHHHHHHCHHHHHHHHHHHTCG-GGTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHH
T ss_pred CCHHHHHhCHHHHHHHHHHhCCC-chhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 34333444444444555555211 1 2235555544322 2233333333444444443333334555677777766655
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 015554 182 AFARAEIESARAAVQRVEESLQEH 205 (405)
Q Consensus 182 a~A~aEIE~ArAaV~Rve~al~Eq 205 (405)
. ...+|....+....+++.+++.
T Consensus 80 ~-~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 80 E-IVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4667888888888888877654
No 43
>2j8w_A Cytochrome C'; heme, iron, transport, metal-binding, electron transfer, electron transport; HET: HEM; 1.29A {Rubrivivax gelatinosus} SCOP: a.24.3.2 PDB: 1jaf_A* 2j9b_A*
Probab=36.44 E-value=1.7e+02 Score=23.75 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=62.2
Q ss_pred hchHHHHHHHHHHHHHhhcccCCC---ChhhHHHHHHHHHHHHHHhhh-------------hhhhhHHHHHHHHHHHHHH
Q 015554 103 LEKHVLLKKLRDALESLRGRVAGR---NKDDVEEAIAMVEALAVQLTQ-------------REGELIQEKAEVKKLADFL 166 (405)
Q Consensus 103 Ler~vLLKkLR~~LesLrGRvaGr---nKddveeaismVeaLavqltq-------------rE~ELiQeK~EVkKlA~~l 166 (405)
=+|+.++|.++..+..|.+=+-|. +.+.|..+...+..++-.+.. -=-+.-++..+.++++.-|
T Consensus 10 ~~Rq~~m~~m~~~~~~l~~m~kg~~~~d~~~~~~~A~~l~~~a~~~~~~F~~gs~~g~s~~A~p~IW~~~~~F~~~~~~~ 89 (129)
T 2j8w_A 10 EYRQSAFTLIANHFGRVAAMAQGKAPFDAKVAAENIALVSTLSKLPLTAFGPGTDKGHGTEAKPAVWSDAAGFKAAADKF 89 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHTSGGGSCCTTCCSSTTCCBCTHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhhhHHhCCCCCCCCCccccCHHHHhCHHHHHHHHHHH
Confidence 368899999999999999999999 555666666666666655532 0112345778888888888
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015554 167 KKASEDAKKLVDEERAFARAEIESARAAVQRVEES 201 (405)
Q Consensus 167 KqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~a 201 (405)
..|......... .. ..+..++++..|++.
T Consensus 90 ~~aa~~L~~aA~---~~---D~~~~~~a~~~v~~s 118 (129)
T 2j8w_A 90 AAAVDKLDAAGK---TG---DFAQIKAAVGETGGA 118 (129)
T ss_dssp HHHHHHHHHHHH---HT---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---cC---CHHHHHHHHHHHHHH
Confidence 877665433321 11 245566677776654
No 44
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=36.37 E-value=72 Score=22.71 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=27.4
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecC--CCCccccccccccccccCCCCccccee
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPS--EGGKRELISGATKSVYAPEPFDVGRIL 344 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~--~gsk~E~IsGAtk~~YAPEP~DVGr~L 344 (405)
..|..+.+.....+.|. .|+|||-.. ..+.+-.+++.+=.+..-.+-|-|.|-
T Consensus 22 ~~G~~v~l~C~~~g~pp----~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 76 (95)
T 2ckn_A 22 HPGDLLQLRCRLRDDVQ----SINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYA 76 (95)
T ss_dssp CTTSCEEEECCEESSCC----EEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEE
T ss_pred cCCCeEEEEEECCCCCC----ceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEE
Confidence 35777777766555542 899999110 011122223333334455566666553
No 45
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=35.80 E-value=1.9e+02 Score=24.71 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=26.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015554 161 KLADFLKKASEDAKKLVDEERAFARAEIESARAAVQR 197 (405)
Q Consensus 161 KlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~R 197 (405)
+....+..|-+.|.+|+++.++.|.+..+.+.....+
T Consensus 14 ~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~ 50 (187)
T 3v6i_A 14 EIQALLQEAEAKAEAVKREAEEKAKALLQARERALEA 50 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888888887777776655443
No 46
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=35.39 E-value=30 Score=30.42 Aligned_cols=44 Identities=23% Similarity=0.407 Sum_probs=33.3
Q ss_pred eEEEecCCCCc--------cccccccccccccCCCCcccceeeeEeecCCeEEEEe
Q 015554 311 QWYRVPSEGGK--------RELISGATKSVYAPEPFDVGRILQAEITYNGQQITLT 358 (405)
Q Consensus 311 QWyRv~~~gsk--------~E~IsGAtk~~YAPEP~DVGr~LqadI~~~g~k~~~~ 358 (405)
+||=|..+|-. .-++-|-.||.|.|. .|.|.++ |+.|.+++.++
T Consensus 17 ~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~-~D~Gd~V---VViNaeki~~t 68 (148)
T 2ftc_H 17 IWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHAL-SDCGDHV---VIMNTRHIAFS 68 (148)
T ss_pred cEEEEeCCCCchHHHHHHHHHHHhccCCCCcCcc-ccCCCEE---EEEeceeeEec
Confidence 69888876533 245789999999998 7999986 55677776663
No 47
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=35.04 E-value=1.4e+02 Score=27.66 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=30.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH
Q 015554 180 ERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR 228 (405)
Q Consensus 180 ERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEAR 228 (405)
+...|+++++.|++-..|.+..++. ...-+++++..+.+++.|+
T Consensus 82 ~l~~a~a~l~~a~~~~~R~~~L~~~-----g~is~~~~~~a~~~~~~a~ 125 (369)
T 1vf7_A 82 DYQSAQANLASTQEQAQRYKLLVAD-----QAVSKQQYADANAAYLQSK 125 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----TSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-----CCcCHHHHHHHHHHHHHHH
Confidence 4456777888888888887766543 2334567888877777776
No 48
>3qyc_A VH domain of IGG molecule; immunoglobulin V domain fold, antibody, immune system; 1.60A {Homo sapiens} PDB: 1ieh_A 1ohq_A 2uzi_H*
Probab=34.81 E-value=85 Score=25.71 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=22.9
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKREL 324 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~ 324 (405)
..|..+.|...... .+++.-.+.|||..+..+-+-|
T Consensus 15 ~~G~svtL~C~~s~-~~~~~~~v~WyrQ~~g~~~~~L 50 (146)
T 3qyc_A 15 KPGGSLRLSCAASG-VRLSAYDMAWVRQAPGKGLEWV 50 (146)
T ss_dssp CTTCCEEEEEEEES-SCGGGCCEEEEEECTTSCEEEE
T ss_pred CCCCCEEEEEEeeC-CCcCCCEEEEEEECCCCCcEEE
Confidence 45777777654332 2355678999999885444444
No 49
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=34.76 E-value=2.6e+02 Score=25.22 Aligned_cols=42 Identities=10% Similarity=0.217 Sum_probs=19.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHH
Q 015554 180 ERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEA 227 (405)
Q Consensus 180 ERa~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEA 227 (405)
+......+|+.+++-+.+.++-|. +.+...+++.|.+|+.-+
T Consensus 61 ~~~~~e~~i~~~~~ri~~~~~~l~------~v~~~kE~~aL~kEie~~ 102 (256)
T 3na7_A 61 QVSKNEQTLQDTNAKIASIQKKMS------EIKSERELRSLNIEEDIA 102 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------ccCCHHHHHHHHHHHHHH
Confidence 334445555555555555554431 222333555555555444
No 50
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=34.45 E-value=2.5e+02 Score=28.16 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=10.4
Q ss_pred CCChhhHHHHHHHHHHH
Q 015554 125 GRNKDDVEEAIAMVEAL 141 (405)
Q Consensus 125 GrnKddveeaismVeaL 141 (405)
|-++++|++.+.--+.+
T Consensus 506 ~ls~~ei~~~~~~~~~~ 522 (605)
T 4b9q_A 506 GLNEDEIQKMVRDAEAN 522 (605)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhh
Confidence 56777777666544443
No 51
>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A
Probab=34.30 E-value=1.2e+02 Score=22.46 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=28.0
Q ss_pred ccCcceeEeeCCC-CCCCCCCcceeEEEecCCCCcccccc---ccccccccCCCCcccc
Q 015554 288 ALGSYLRIKPCSN-NGPELSKCSIQWYRVPSEGGKRELIS---GATKSVYAPEPFDVGR 342 (405)
Q Consensus 288 ~LGS~L~i~~~~d-~~~dlSkcsiQWyRv~~~gsk~E~Is---GAtk~~YAPEP~DVGr 342 (405)
..|..+.|..... +. +.-.|.|||..+.++-.-+|. +..++.|.++ +.-||
T Consensus 12 ~~G~~v~L~C~~~~~~---~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~-~~~~R 66 (111)
T 2qhl_A 12 KRGENVTMECSMSKVK---DKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEG-FKDSR 66 (111)
T ss_dssp CTTCCEEECCBCTTCS---CGGGEEEEEECTTBCCEEEEEECSSSSCEEECTT-CCCTT
T ss_pred eCCCCEEEEEEccCCc---ccceEEEEEecCCCCCEEEEEEeccCCccccccC-CCCCc
Confidence 3467776655433 22 356799999987544444442 2234455544 22355
No 52
>3tpk_A Immunoglobulin heavy chain antibody variable DOMA; immunoglobulin heavy chain domains, VHH, complementarity DET regions, CDR, oligomer-specific; 1.30A {Camelidae} PDB: 3ln9_A* 1zv5_A
Probab=34.03 E-value=71 Score=25.56 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=21.9
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKREL 324 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~ 324 (405)
..|..+.|...... ...+.-.+.|||..+..+-.-|
T Consensus 17 ~~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l 52 (136)
T 3tpk_A 17 QPGGSLRLSCTASG-YTFSQEFVIWFRQAPGKEREIV 52 (136)
T ss_dssp CTTCCEEEEEEEEE-SGGGCCEEEEEEECTTSCCEEE
T ss_pred ccCCCEEEEEEEcc-cccCCcEEEEEEECCCCCcEEE
Confidence 45777776554322 1345678999999884443334
No 53
>3k74_B Nanobody; immunoglobulin, antibiotic resista methotrexate resistance, NADP, one-carbon metabolism, oxidoreductase, trimethoprim resistance; 1.95A {Lama glama}
Probab=33.94 E-value=37 Score=25.79 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=21.6
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccc
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 325 (405)
.|..+.|...... ...+.-.+.|||..+.++-.-|+
T Consensus 12 ~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l~ 47 (115)
T 3k74_B 12 PGGSLRLSCAASG-FTFNNYWMYWVRRAPGKGLEWVS 47 (115)
T ss_dssp TTCCEEEEEEECS-SCGGGSCEEEEEECTTCCEEEEE
T ss_pred CCCcEEEEEEEeC-ccccCCEEEEEEECCCCCeEEEE
Confidence 4666666554332 23456789999998754444443
No 54
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=33.90 E-value=25 Score=27.54 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=17.7
Q ss_pred cccccHHHHHHHHHHHHHHhH
Q 015554 238 KVMDMEHELRALRIQLAEKSK 258 (405)
Q Consensus 238 KvMDME~El~~LR~ql~eKs~ 258 (405)
|--.||-|=+.+|++|..|..
T Consensus 31 Kh~kME~ERE~mRQ~IRdKY~ 51 (63)
T 3rk3_E 31 KYAKMEAEREAVRQGIRDKYG 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345799999999999999863
No 55
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=33.35 E-value=64 Score=26.48 Aligned_cols=46 Identities=24% Similarity=0.256 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHH
Q 015554 109 LKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFAR 185 (405)
Q Consensus 109 LKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~ 185 (405)
-||+|-+..-+||+ .|++|+...+. +=|.|++.-.|++....+||.
T Consensus 10 pkK~r~va~~IrG~-------~v~eAl~~L~f------------------------~pkkaa~~v~klL~sA~aNA~ 55 (110)
T 2ftc_M 10 KDKMWYLAKLIRGM-------SIDQALAQLEF------------------------NDKKGAKIIKEVLLEAQDMAV 55 (110)
T ss_pred HHHHHHHHHHHcCC-------cHHHHHHHHHH------------------------CCHHHHHHHHHHHHHHHHhHH
Confidence 48999999999986 58889888663 456677777888888777764
No 56
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.74 E-value=2.1e+02 Score=23.65 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=0.0
Q ss_pred cccCCCChhhHHHHH
Q 015554 121 GRVAGRNKDDVEEAI 135 (405)
Q Consensus 121 GRvaGrnKddveeai 135 (405)
|-+|-+|+.|+|.-.
T Consensus 1 ~~ia~knr~eaE~~y 15 (131)
T 3tnu_A 1 GSTAEKNRKDAEEWF 15 (131)
T ss_dssp ---------------
T ss_pred ChHHHHhHHHHHHHH
Confidence 456777777777643
No 57
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=32.69 E-value=15 Score=33.11 Aligned_cols=18 Identities=39% Similarity=0.848 Sum_probs=16.8
Q ss_pred ccCCCChhhHHHHHHHHH
Q 015554 122 RVAGRNKDDVEEAIAMVE 139 (405)
Q Consensus 122 RvaGrnKddveeaismVe 139 (405)
||.|+++||.-++|+++-
T Consensus 131 RVtgKkrDDLQ~viallk 148 (163)
T 1in0_A 131 RVTGKSRDDLQAVIQLVK 148 (163)
T ss_dssp EEEESCHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHH
Confidence 899999999999999974
No 58
>1mqv_A Cytochrome C'; four-helix bundle, electron transport; HET: HEM; 1.78A {Rhodopseudomonas palustris} SCOP: a.24.3.2 PDB: 1a7v_A*
Probab=32.65 E-value=2e+02 Score=23.32 Aligned_cols=91 Identities=18% Similarity=0.301 Sum_probs=64.3
Q ss_pred chHHHHHHHHHHHHHhhcccCCC---ChhhHHHHHHHHHHHHHHhhhh---------h----hhhHHHHHHHHHHHHHHH
Q 015554 104 EKHVLLKKLRDALESLRGRVAGR---NKDDVEEAIAMVEALAVQLTQR---------E----GELIQEKAEVKKLADFLK 167 (405)
Q Consensus 104 er~vLLKkLR~~LesLrGRvaGr---nKddveeaismVeaLavqltqr---------E----~ELiQeK~EVkKlA~~lK 167 (405)
+|+.++|.++..+..|.+=+-|. +.+.|..+...+..++-.+..- . -+.-++..+.++++.-|.
T Consensus 7 ~Rq~~m~~m~~~~~~l~~m~kg~~~~d~~~~~~~a~~l~~~a~~~~~~F~~gs~~~~~s~A~p~IW~~~~~F~~~~~~~~ 86 (125)
T 1mqv_A 7 QRKAILKQMGEATKPIAAMLKGEAKWDQAVVQKSLAAIADDSKKLPALFPADSKTGGDTAALPKIFEDKAKFDDLFAKLA 86 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHGGGSCCGGGTTCSSCCBCGGGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhhhhHhhCCCCCCCCCCCccCHHHHhCHHHHHHHHHHHH
Confidence 58899999999999999999898 5566777777777777666431 1 123357788899988888
Q ss_pred HhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 015554 168 KASEDAKKLVDEERAFARAEIESARAAVQRVEESL 202 (405)
Q Consensus 168 qASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al 202 (405)
.|........ . ..+..++++..|++.-
T Consensus 87 ~aa~~l~~aa-~-------d~~~~~~a~~~v~~sC 113 (125)
T 1mqv_A 87 AAATAAQGTI-K-------DEASLKANIGGVLGNC 113 (125)
T ss_dssp HHHHHHHHHC-C-------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-c-------CHHHHHHHHHHHHhHH
Confidence 8776654333 1 3555677777776653
No 59
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=31.76 E-value=4.1e+02 Score=27.36 Aligned_cols=83 Identities=20% Similarity=0.362 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh---cCcccHHHHHHHHHHHHhhhhccCCccccccHHHHH----HHHHHHHHHh
Q 015554 185 RAEIESARAAVQRVEESLQEHEQMSRA---SGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELR----ALRIQLAEKS 257 (405)
Q Consensus 185 ~aEIE~ArAaV~Rve~al~Eqe~~s~~---s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~----~LR~ql~eKs 257 (405)
++.=|+|++....+++-..+++++-.+ +-++-+..|.+...+-|+ .+|-+-.++ +++-++ -|+.++.+|+
T Consensus 493 ~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~-~~~~e~~~~--~~~~~~~~~~~~~~g~~~~~ 569 (592)
T 1f5n_A 493 RVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRV-QLLKEQERT--LALKLQEQEQLLKEGFQKES 569 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 344466777777777665555554322 222344444443333222 222111111 222222 2455555554
Q ss_pred HHHHHHHHHHHHhhhh
Q 015554 258 KCSLLLRKELAMSKRI 273 (405)
Q Consensus 258 ~~~v~L~KEL~~~kr~ 273 (405)
-.|++|+.-.++.
T Consensus 570 ---~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 570 ---RIMKNEIQDLQTK 582 (592)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHh
Confidence 4567777655543
No 60
>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X* 1ezv_X* 3cxh_J*
Probab=31.71 E-value=35 Score=26.38 Aligned_cols=37 Identities=11% Similarity=-0.030 Sum_probs=20.9
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccc
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 325 (405)
.|..+.|.......+.-+.-.|.|||..+.++-.-||
T Consensus 14 ~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~ 50 (127)
T 3cx5_J 14 PSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVG 50 (127)
T ss_dssp TTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEE
T ss_pred CCCCEEEEEEEeCcccCCCcEEEEEEECCCCCcEEEE
Confidence 4677766554332221122679999998754333444
No 61
>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A
Probab=31.07 E-value=48 Score=26.07 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=24.3
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
..|..+.|....... .++...+.|||..+..+-+-+|.
T Consensus 13 ~~G~~vtL~C~~s~~-~~~~~~v~Wyrq~~g~~~~~li~ 50 (123)
T 3t0v_A 13 TPGQKVTIFCSGSSS-NVEDNSVYWYQQFPGTTPKVLIY 50 (123)
T ss_dssp CTTCCEEEEEECCTT-TTTTSCEEEEEECTTSCCEEEEE
T ss_pred cCCCCEEEEEecCCC-ccCCCeEEEEEECCCCCCEEEEE
Confidence 357777776554432 34567899999987544444554
No 62
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=30.75 E-value=3.7e+02 Score=27.29 Aligned_cols=103 Identities=16% Similarity=0.072 Sum_probs=49.7
Q ss_pred hhhchHHHHHHH--HHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH----------
Q 015554 101 ASLEKHVLLKKL--RDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKK---------- 168 (405)
Q Consensus 101 a~Ler~vLLKkL--R~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKq---------- 168 (405)
|+|+-..+-.+. -.+-++|+-|- .+.++|++-+++=+. -.++.++=.+|-.++-++.|--.-+|.
T Consensus 6 mmldi~~~r~~~~~~~v~~~~~~R~--~~~~~~d~~~~ld~~-~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~ 82 (484)
T 3lss_A 6 MVLDIQLFRDETGANIIRESQRRRF--ADPDIVDAIIEADKK-WRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSE 82 (484)
T ss_dssp CCCCGGGGGSHHHHHHHHHHHHHTT--CCTTHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------
T ss_pred ccccHHHHHcCCCHHHHHHHHHhcC--CChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 355655555553 23556666663 334457776665333 333333333444444444432222343
Q ss_pred --------------hhHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015554 169 --------------ASEDAKKL----VDEERAFARAEIESARAAVQRVEESLQEHE 206 (405)
Q Consensus 169 --------------ASeDAkki----V~eERa~A~aEIE~ArAaV~Rve~al~Eqe 206 (405)
+.+|+..+ ..+.-..-..+|....+.+..+++.+++.-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l 138 (484)
T 3lss_A 83 IPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLM 138 (484)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666 444345566777777777777777776543
No 63
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=30.63 E-value=4.2e+02 Score=26.43 Aligned_cols=75 Identities=8% Similarity=0.141 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCc-------ccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHh
Q 015554 185 RAEIESARAAVQRVEESLQEHEQMSRASGK-------QDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKS 257 (405)
Q Consensus 185 ~aEIE~ArAaV~Rve~al~Eqe~~s~~s~k-------qd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~eKs 257 (405)
..||++.-..|..+-.+++.--+-.+...+ |....|++|+..--. .+-..+..|+.|+.++....
T Consensus 47 l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~--------~~~~~~~~i~~l~~~~~~~~ 118 (409)
T 1m1j_C 47 LQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYEN--------TILAHENTIQQLTDMHIMNS 118 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHH--------HhcchHHHHHHHHHHHHhhH
Confidence 346666666666666666655332222211 122233333332211 23334456666666666555
Q ss_pred HHHHHHHHHH
Q 015554 258 KCSLLLRKEL 267 (405)
Q Consensus 258 ~~~v~L~KEL 267 (405)
....+|+..+
T Consensus 119 ~~i~~l~~~i 128 (409)
T 1m1j_C 119 NKITQLKQKI 128 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445554444
No 64
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Probab=29.90 E-value=1.1e+02 Score=23.01 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=22.2
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccccc
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISG 327 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsG 327 (405)
.|..+.|.....+ .+.-.|.|||..+.++-.-+|..
T Consensus 15 ~G~~vtL~C~~~~---~~~~~v~W~rq~~~~~~~~l~~~ 50 (112)
T 1fo0_B 15 RGQAVNLRCILKN---SQYPWMSWYQQDLQKQLQWLFTL 50 (112)
T ss_dssp TTCCEEEEEEESC---TTCCEEEEEEECTTCCEEEEEEC
T ss_pred cCCcEEEEEEeCC---CCCceEEEEEECCCCCCEEEEEE
Confidence 5677776554332 23457999999885444555543
No 65
>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A
Probab=29.43 E-value=55 Score=24.89 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=21.7
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
.|..+.|...... ...+.-.+.|||..+..+-.-+|.
T Consensus 16 ~G~~vtL~C~~~~-~~~~~~~v~Wyrq~~~~~~~~l~~ 52 (123)
T 2p45_B 16 AGGSLRLSCAASG-YAYTYIYMGWFRQAPGKEREGVAA 52 (123)
T ss_dssp TTCCEEEEEEEES-CSSCCSEEEEEEECTTSCCEEEEE
T ss_pred CCCCEEEEEEecC-ccCcCcEEEEEEECCCCCcEEEEE
Confidence 4666666544332 123467899999987544444443
No 66
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=29.25 E-value=56 Score=25.25 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=18.2
Q ss_pred HHHHHHhcccchhHhHHHhhh
Q 015554 63 AQLLEQQKRLSVRDLANKFEK 83 (405)
Q Consensus 63 a~L~~q~kRLSVRDLA~KFEK 83 (405)
-+++.++.++||.|||..|.=
T Consensus 8 l~~L~~~g~vsv~eLa~~l~V 28 (78)
T 1xn7_A 8 RDLLALRGRMEAAQISQTLNT 28 (78)
T ss_dssp HHHHHHSCSBCHHHHHHHTTC
T ss_pred HHHHHHcCCCcHHHHHHHHCc
Confidence 467889999999999999963
No 67
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.53 E-value=2.5e+02 Score=23.12 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=17.0
Q ss_pred cCCCChhhHHHHH-HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015554 123 VAGRNKDDVEEAI-AMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEES 201 (405)
Q Consensus 123 vaGrnKddveeai-smVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~a 201 (405)
+|-||+.|+|.-. +=++-|-.+-++.-.+|-.-|.|+..+-..+ ..-++||++.+.-..-++..
T Consensus 1 ia~knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~i---------------q~L~~el~~l~~~~~~LE~~ 65 (129)
T 3tnu_B 1 MANRSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMI---------------QRLRAEIDNVKKQCANLQNA 65 (129)
T ss_dssp ---------------------------------CHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhHHHHHHHH
Confidence 3556777766543 2233333333444444444444444332111 12345555555555555555
Q ss_pred HHHHHH
Q 015554 202 LQEHEQ 207 (405)
Q Consensus 202 l~Eqe~ 207 (405)
|.+-+.
T Consensus 66 l~e~e~ 71 (129)
T 3tnu_B 66 IADAEQ 71 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 68
>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C
Probab=28.35 E-value=40 Score=25.26 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=21.5
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 325 (405)
..|..+.|...... ...+.-.|.|||..+..+-.-+|
T Consensus 13 ~~G~~vtL~C~~~~-~~~~~~~v~Wyrq~~~~~~~~l~ 49 (117)
T 2yc1_A 13 QPGGSLRLSCTGSG-FTFDNYAMHWLRQVPGEGLEWVS 49 (117)
T ss_dssp CTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEE
T ss_pred cCCCeEEEEEEecC-cccCCCeEEEEEECCCCCcEEEE
Confidence 35666666554332 12346789999998744333343
No 69
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=28.21 E-value=24 Score=26.51 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=17.0
Q ss_pred cccccHHHHHHHHHHHHHHh
Q 015554 238 KVMDMEHELRALRIQLAEKS 257 (405)
Q Consensus 238 KvMDME~El~~LR~ql~eKs 257 (405)
|--.||-|=+.+|++|..|.
T Consensus 28 Kh~kmE~eRE~mRq~IRdKY 47 (49)
T 1kil_E 28 KYAKMEAEREVMRQGIRDKY 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34579999999999999885
No 70
>2x1q_A Gelsolin nanobody; contractIle protein; 1.06A {Lama glama} PDB: 2x1p_A 2xa3_A 3k7u_A 3sn6_N* 3stb_A 2x1o_A 3k80_A 1ol0_A 1u0q_A 1qd0_A* 3ezj_B 3p0g_B* 1mvf_A 1t2j_A
Probab=28.21 E-value=72 Score=24.67 Aligned_cols=38 Identities=16% Similarity=0.361 Sum_probs=21.5
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
..|..+.|...... ...+.-.|.|||..+..+-+-+|.
T Consensus 13 ~~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l~~ 50 (127)
T 2x1q_A 13 QPGGSLRLSCAASG-RTFSNYRMGWFRQAPGKEREFVAT 50 (127)
T ss_dssp CTTCCEEEEEC-------CCSEEEEEEECTTSCCEEEEE
T ss_pred cCCCCEEEEEEeCC-cccCCcEEEEEEECCCCCCEEEEE
Confidence 45777777554332 223567899999998544444443
No 71
>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D
Probab=28.06 E-value=45 Score=25.37 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=22.0
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 325 (405)
..|..+.|...... ...+.-.+.|||..+..+-.-++
T Consensus 13 ~~G~~vtL~C~~~~-~~~~~~~v~W~rq~~g~~~~~l~ 49 (123)
T 2wzp_D 13 QAGGSLRLSCTASR-RTGSNWCMGWFRQLAGKEPELVV 49 (123)
T ss_dssp ETTCCEEEEEEESS-CCSSSEEEEEEECCSSSSCEEEE
T ss_pred cCCCcEEEEEEecC-CCccCcEEEEEEECCCCCCEEEE
Confidence 35677766554332 23356789999998743333344
No 72
>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*
Probab=27.92 E-value=44 Score=25.21 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=21.2
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccc
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 325 (405)
.|..+.|...... .+.+.-.+.|||..+..+-.-+|
T Consensus 14 ~G~~vtL~C~~~~-~~~~~~~v~W~rq~~~~~~~~l~ 49 (120)
T 3b9v_A 14 PGGSLRLSCAASG-FNIKDTYIGWVRRAPGKGEEWVA 49 (120)
T ss_dssp TTCCEEEEEEEES-SCGGGSEEEEEEECTTCCEEEEE
T ss_pred CCccEEEEEEeeC-ccccccEEEEEEECCCCCcEEEE
Confidence 4666666544332 12346789999998744333344
No 73
>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*
Probab=27.40 E-value=37 Score=25.76 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=24.5
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISG 327 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsG 327 (405)
..|..+.|.......+..+.-.+.|||..+.++-.-+|..
T Consensus 13 ~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~ 52 (120)
T 1oaq_L 13 SPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGG 52 (120)
T ss_dssp CTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEET
T ss_pred cCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEE
Confidence 3467777765545444324567999999875444445543
No 74
>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=27.25 E-value=1.2e+02 Score=24.60 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=22.4
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
..|..+.|.......+ .-.|.|||..+...-.-+|.
T Consensus 13 ~~G~~vtL~C~~s~~~---~~~v~Wyrq~~g~~~~~li~ 48 (143)
T 3u6r_L 13 SPGERATLSCRASQSV---NKYLAWYQQKPGQAPRLLIY 48 (143)
T ss_dssp CTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEE
T ss_pred eCCCCEEEEEEECCCC---ceeeEEEEECCCCCCEEEEE
Confidence 3577777766544433 45799999987544444443
No 75
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=27.02 E-value=42 Score=25.08 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=20.3
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
.|..+.+...-. +..+.-.|.|||..+..+-.-++.
T Consensus 14 ~G~~vtL~C~~~--~~~~~~~v~W~r~~~~~~~~~l~~ 49 (116)
T 1tvd_A 14 SGSEVVLLCTYD--TVYSNPDLFWYRIRPDYSFQFVFY 49 (116)
T ss_dssp TTCCEEECCEEE--CCSSSCCEEEEEECTTSCEEEEEE
T ss_pred cCCeEEEEeEeE--cCCCCcEEEEEEeCCCCCcEEEEE
Confidence 455555543322 223456899999987444334443
No 76
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.87 E-value=1.8e+02 Score=21.27 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=17.4
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEE
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYR 314 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyR 314 (405)
..|+.+.+.....+.|. -.|+|||
T Consensus 21 ~~G~~v~l~C~~~g~p~---p~i~W~k 44 (118)
T 2eo9_A 21 AVDGTFVLSCVATGSPV---PTILWRK 44 (118)
T ss_dssp ETTCEEEEECBCCCSSC---CEEEEEE
T ss_pred cCCCeEEEEEEEEecCC---CEEEEEE
Confidence 35777887776666665 3699999
No 77
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=26.85 E-value=53 Score=24.31 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=22.5
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccccc
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISG 327 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsG 327 (405)
.|..+.+.....+.+ .-.|.|||..+.++-..+|..
T Consensus 15 ~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~~ 50 (108)
T 1qfw_M 15 VGERVTLSCKASETV---DSFVSWYQQKPEQSPKLLIFG 50 (108)
T ss_dssp TTCCEEEEEEESSCC---CSCEEEEEECTTSCCEEEECS
T ss_pred CCCCEEEEeeeCCCC---CcEEEEEEECCCCCCEEEEEE
Confidence 566666665544444 457999999875444445543
No 78
>1kxt_B Immunoglobulin VHH fragment; alpha 8 beta 8, beta barrel, hydrolase, immune system; 2.00A {Camelus dromedarius} SCOP: b.1.1.1
Probab=26.61 E-value=71 Score=24.79 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=22.9
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
..|..+.|...... .+.+.-.+.|||..+.++-.-+|.
T Consensus 13 ~~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l~~ 50 (127)
T 1kxt_B 13 QAGGSLRLSCAASG-YTFSSYPMGWYRQAPGKECELSAR 50 (127)
T ss_dssp CTTCCEEEEEEEC---CCSSSCEEEEEECTTSCEEEEEE
T ss_pred eCCCCEEEEeEecC-CCccceEEEEEEECCCCCcEEEEE
Confidence 45777777554332 233567899999988544444443
No 79
>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}
Probab=26.58 E-value=51 Score=25.67 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=24.1
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
..|..+.|........+.+.-.+.|||..+.++-.-+|.
T Consensus 13 ~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~ 51 (126)
T 2h32_A 13 ALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLR 51 (126)
T ss_dssp ETTCCEEEEEEECTTSCGGGCEEEEEEECTTSCCEEEEE
T ss_pred CCCCCEEEEEEecCCCccccceEEEEEECCCCCCEEEEE
Confidence 457777776554433234566899999987544444553
No 80
>1gqa_A Cytochrome C'; electron transport, heme; HET: HEC; 1.8A {Rhodobacter sphaeroides} SCOP: a.24.3.2
Probab=26.56 E-value=2.6e+02 Score=22.80 Aligned_cols=93 Identities=12% Similarity=0.051 Sum_probs=62.1
Q ss_pred hchHHHHHHHHHHHHHhhcccCCC---ChhhHHHHHHHHHHHH-HHh-------h---hhh-----hhhHHHHHHHHHHH
Q 015554 103 LEKHVLLKKLRDALESLRGRVAGR---NKDDVEEAIAMVEALA-VQL-------T---QRE-----GELIQEKAEVKKLA 163 (405)
Q Consensus 103 Ler~vLLKkLR~~LesLrGRvaGr---nKddveeaismVeaLa-vql-------t---qrE-----~ELiQeK~EVkKlA 163 (405)
=+|+.++|.++..+..|.+=+-|+ +.+.|..+..-+..++ ..+ | ..- -+.-++..+.+.++
T Consensus 8 ~~Rq~~m~~m~~~~~~l~~m~kg~~~~d~~~~~~~A~~l~~~ag~~~~~~F~~gs~~~~~~~s~Akp~IW~~~~~F~~~~ 87 (130)
T 1gqa_A 8 EARKGYFSLVALEFGPLAAMAKGEMPYDAAAAKAHASDLVTLTKYDPSDLYAPGTSADDVKGTAAKAAIWQDADGFQAKG 87 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHSCGGGGGCTTCSTTTSSSCCBCTHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhhhhhHhhCCCCCccccCCCcccCHHHHhCHHHHHHHH
Confidence 368899999999999999999898 5566777777777777 554 2 110 13345778888888
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 015554 164 DFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESL 202 (405)
Q Consensus 164 ~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al 202 (405)
.-|..|....... .... .+..++++..|++.-
T Consensus 88 ~~~~~aa~~l~~a---a~~g----~~~~~~a~~~v~~sC 119 (130)
T 1gqa_A 88 MAFFEAVAALEPA---AGAG----QKELAAAVGKVGGTC 119 (130)
T ss_dssp HHHHHHHHHHHHH---HTSC----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHhc----HHHHHHHHHHHHhHH
Confidence 8888776654322 2222 445566777666543
No 81
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=26.39 E-value=53 Score=25.87 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=19.5
Q ss_pred ccCcceeEeeCCCCCCC--CCCcceeEEE
Q 015554 288 ALGSYLRIKPCSNNGPE--LSKCSIQWYR 314 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~d--lSkcsiQWyR 314 (405)
..|+.+.+.....+.|. .+.-.|+|||
T Consensus 15 ~~G~~v~L~C~~~~~p~~~~~~~~v~W~k 43 (202)
T 3bp6_B 15 DVGSSVSLECDFDRRECTELEGIRASLQK 43 (202)
T ss_dssp ETTSCEEEEEEECTTC---CTTEEEEEEE
T ss_pred eCCCcEEEEEEecCCCCCCccceEEEEEc
Confidence 35777777776676664 6667899999
No 82
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=26.16 E-value=1.8e+02 Score=20.71 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=12.2
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHH
Q 015554 166 LKKASEDAKKLVDEERAFARAEIESAR 192 (405)
Q Consensus 166 lKqASeDAkkiV~eERa~A~aEIE~Ar 192 (405)
|+.|-..|..|+++.+..|...++.+.
T Consensus 4 L~~Ar~ea~~Ii~~A~~~a~~~~~e~~ 30 (61)
T 1l2p_A 4 LKKAKAEAQVIIEQANKRRSQILDEAK 30 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 83
>3k3q_A Llama AA1 VHH domain; llama, VHH, antibody, BONT, cell junction, cell membrane, cytoplasm, disulfide bond, hydrolase; 2.60A {Lama glama} SCOP: b.1.1.0
Probab=25.74 E-value=1.6e+02 Score=24.27 Aligned_cols=37 Identities=14% Similarity=0.307 Sum_probs=22.6
Q ss_pred ccCcceeEeeCCCCCCCCC-----------CcceeEEEecCCCCccccc
Q 015554 288 ALGSYLRIKPCSNNGPELS-----------KCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlS-----------kcsiQWyRv~~~gsk~E~I 325 (405)
..|..+.|...... ..++ .-.+.|||..+..+-+-||
T Consensus 16 ~~G~~vtL~C~~s~-~~~~~~~~~~~~~~~~~~v~WyrQ~pg~~p~~L~ 63 (151)
T 3k3q_A 16 QAGKSLRLSCAISG-LAFDGGAMGSEHRLTAGAMGWFRQAPGKDREFVA 63 (151)
T ss_dssp ETTCCEEEEEEEES-CCCSSTTTCGGGTTSCCEEEEEEECTTSCEEEEE
T ss_pred CCCCCEEEEEEEeC-ccccccccccccccCCeeEEEEEECCCCCcEEEE
Confidence 45777777654332 2233 5579999999854444444
No 84
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=25.71 E-value=30 Score=28.53 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=16.9
Q ss_pred cccchhHhHHHhhhchhHHHhhhHH
Q 015554 70 KRLSVRDLANKFEKGLAAAAKLSEE 94 (405)
Q Consensus 70 kRLSVRDLA~KFEKgl~~AakLs~E 94 (405)
++|||||||-+| |...+..++++
T Consensus 2 ~~l~v~dLcVqf--gc~e~~~~a~~ 24 (95)
T 3m03_A 2 SNIGIRDLAVQF--SCIEAVNMASK 24 (95)
T ss_dssp CCCCHHHHHHHH--TCGGGHHHHHH
T ss_pred CcCCHHHHHHHh--CCHHHHHHHHH
Confidence 589999999999 56555554444
No 85
>1rjc_A 1D2L19, camelid heavy chain antibody; beta sandwich, immunoglobulin fold, protein-protein hetero C alpha-beta orthogonal bundle, immune system-hydrolase compl; 1.40A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1ri8_A 1xfp_A 1jtt_A 2x6m_A 1zmy_A 1f2x_K
Probab=25.54 E-value=84 Score=25.09 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=22.6
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 325 (405)
..|..+.|...... ...+.-.|.|||..+..+-.-||
T Consensus 13 ~~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l~ 49 (137)
T 1rjc_A 13 QAGQSLRLSCATSG-ATSSSNCMGWFRQAPGKEREGVA 49 (137)
T ss_dssp CTTCCEEEEEECC--CTTTCSEEEEEEECTTSCCEEEE
T ss_pred ecCCCEEEEEEecC-CcCCCcEEEEEEECCCCCCEEEE
Confidence 35777777655432 23356789999998854444444
No 86
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=25.08 E-value=1.1e+02 Score=30.09 Aligned_cols=93 Identities=18% Similarity=0.353 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhcccCCCChh--h-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHH
Q 015554 109 LKKLRDALESLRGRVAGRNKD--D-VEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLK---KASEDAKKLVDEERA 182 (405)
Q Consensus 109 LKkLR~~LesLrGRvaGrnKd--d-veeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lK---qASeDAkkiV~eERa 182 (405)
+|-+|+-.+.++-.+.-|+.+ | |++-+++ --++-+-..++-+-+++-.+++.-+. ...+|+..+..+-+.
T Consensus 4 ~~~~r~~~~~~~~~~~~r~~~~~~~~~~~~~~----~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~ 79 (425)
T 2dq3_A 4 INLIREKPDYVKERLATRDKELVSLVDKVLEL----DKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKE 79 (425)
T ss_dssp HHHHHHCHHHHHHHHTTTCGGGHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHH
T ss_pred HHHHHhCHHHHHHHHHHhCCCchhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHH
Confidence 455565566666666666665 2 4444433 33333333333333344444444433 345666666555443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 015554 183 FARAEIESARAAVQRVEESLQEHE 206 (405)
Q Consensus 183 ~A~aEIE~ArAaV~Rve~al~Eqe 206 (405)
-..+|....+....+++.+++.-
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 80 -LKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777776543
No 87
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.81 E-value=1.8e+02 Score=20.70 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=14.9
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEE
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYR 314 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyR 314 (405)
..|..+.+.....+.|.- |+|||
T Consensus 23 ~~G~~v~l~C~~~~~p~~----v~W~k 45 (104)
T 2e6p_A 23 TTSERVVLTCELSRVDFP----ATWYK 45 (104)
T ss_dssp ESSSCEECCEECSSTTCC----CEEEE
T ss_pred eCCCcEEEEEEecCCCCc----cEEee
Confidence 357777776655554432 89998
No 88
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}
Probab=24.64 E-value=1e+02 Score=23.73 Aligned_cols=21 Identities=10% Similarity=0.366 Sum_probs=17.1
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEE
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYR 314 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyR 314 (405)
-|+.+.+....++.|. |.|||
T Consensus 13 ~G~~v~L~C~~~g~P~-----i~W~k 33 (82)
T 3r08_E 13 SGTSVELTCPLDSDEN-----LKWEK 33 (82)
T ss_dssp ETTEEEEECSSCCCSS-----CEEEE
T ss_pred cCCeEEEEEECCCCCc-----EEEEE
Confidence 4788888888888773 99999
No 89
>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1
Probab=24.61 E-value=71 Score=23.81 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=20.3
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 325 (405)
..|..+.|....... ..+.-.+.|||..+.++-.-++
T Consensus 13 ~~G~~vtL~C~~~~~-~~~~~~v~W~rq~~~~~~~~l~ 49 (114)
T 1sjv_A 13 QAGESLKLSCAASGN-TFSGGFMGWYRQAPGKQRELVA 49 (114)
T ss_dssp CTTCCEEEEECCCC------CCEEEEEECTTSCCEEEE
T ss_pred cCCCCEEEEEEEcCc-cccCCeEEEEEECCCCCCEEEE
Confidence 357777765554422 2246689999998743333343
No 90
>3v0a_C Llama antibody F12; botulinum neurotoxin, toxin, neurotoxin associated protein, progenitor toxin complex, VHH bound interlocked complex; HET: MES; 2.70A {Lama glama}
Probab=24.33 E-value=1.5e+02 Score=23.99 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=22.9
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKREL 324 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~ 324 (405)
..|..+.|...... ...+.-.+.|||..+.++-.-|
T Consensus 22 ~~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l 57 (152)
T 3v0a_C 22 QPGGSLRLSCAASG-FTLGSRYMSWVRQAPGEGFEWV 57 (152)
T ss_dssp SSCSEEEEEEEEES-SCGGGSCEEEEEECTTSCEEEE
T ss_pred ccCCCEEEEEEecC-CCccCCeEEEEEECCCCCCEEE
Confidence 45777777655432 2356778999999874433334
No 91
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}
Probab=24.27 E-value=67 Score=24.99 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=27.5
Q ss_pred eeeccccc----cCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 281 YELDGSEA----LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 281 yeLeG~e~----LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
|.++|... .|..+.|...-... .+.-.+.|||..+.++..-+|.
T Consensus 4 ~~v~~p~~v~~~~G~svtL~C~~s~~--~~~~~~~W~rq~~~~~~~~li~ 51 (124)
T 2nms_A 4 PQITGPTTVNGLERGSLTVQCVYRSG--WETYLKWWCRGAIWRDCKILVK 51 (124)
T ss_dssp CSEECCSEEEEETTCCEEEEEEECTT--CTTSEEEEEESSSSTTCEEEEE
T ss_pred eEeecccEEEEeCCCCEEEEeEEeCC--cccccEEEEeCCCCCCceEEEE
Confidence 45555544 47777776553432 3444799999998555555654
No 92
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A
Probab=23.93 E-value=63 Score=23.83 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=22.2
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
..|..+.+.....+.+ .-.|.|||..+.++-.-+|.
T Consensus 14 ~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~ 49 (107)
T 1i8k_A 14 ATGEKVTIRCMTSTDI---DDDMNWYQQKPGEPPKFLIS 49 (107)
T ss_dssp CTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEE
T ss_pred cCCCCEEEEEEECCCC---CCcEEEEEECCCCCCEEEEE
Confidence 3567777765545444 45799999887444344554
No 93
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=23.88 E-value=2.2e+02 Score=24.81 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 015554 138 VEALAVQLTQREGELIQEKAEVKKLADFLKK--ASEDAKKLVDEERAFARAEIESARAAVQRVEESLQ 203 (405)
Q Consensus 138 VeaLavqltqrE~ELiQeK~EVkKlA~~lKq--ASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~ 203 (405)
++.+-.+|.+-+.+|-+-+.+..+.-.++++ +|..--.-...+...|++++++|++.+...+..|+
T Consensus 62 l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 62 YDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 94
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=23.81 E-value=1.1e+02 Score=25.96 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=15.6
Q ss_pred ccCCCCcccceeeeEee----------cCCeEEEEeecCCCCCCCCchhHHHHHh
Q 015554 333 YAPEPFDVGRILQAEIT----------YNGQQITLTTTGAVDPAPGLGSYVEALV 377 (405)
Q Consensus 333 YAPEP~DVGr~LqadI~----------~~g~k~~~~T~GPidpaaGL~~yVEaL~ 377 (405)
..-.+-|-|.|.=+=-+ ..|-+.+| ..+|-.+.-||.+.++|-.
T Consensus 218 ~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V-~~~~~~~~~~~~~~~~~~~ 271 (276)
T 3auv_A 218 NSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVTV-SSASAAAGGGLNDIFEAQK 271 (276)
T ss_dssp CSCCGGGCEEEEEEEECSSTTCSCCCBCCCEEEEE-C------------------
T ss_pred CCCChhHCEEEEEEEEcCcCCcCceEECCCEEEEE-ccccccccCChhhhhhhhc
Confidence 35567788887533222 24677777 4566666677888888765
No 95
>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...
Probab=23.39 E-value=63 Score=24.78 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=22.0
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
.|..+.+.....+.+ .-.|.|||-.+.++-.-+|.
T Consensus 15 ~G~~v~L~C~~~~~~---~~~v~W~r~~~g~~~~~li~ 49 (120)
T 1mqk_L 15 VGETVTITCRASENI---YSYLAWYQQKQGKSPQFLVY 49 (120)
T ss_dssp TTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEE
T ss_pred CCCcEEEEEEeCCCC---CceEEEEEECCCCCCEEEEE
Confidence 567777665545444 45799999987444444444
No 96
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1
Probab=23.34 E-value=68 Score=23.50 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=22.6
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
..|..+.+.....+.| .-.|.|||-.+.++-..+|.
T Consensus 14 ~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~ 49 (108)
T 1jhl_L 14 SPGETITINCRASKSI---SKSLAWYQEKPGKTNNLLIY 49 (108)
T ss_dssp CTTSCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEE
T ss_pred cCCCCEEEEeEECCCC---CceEEEEEECCCCCCEEEEE
Confidence 3567777766555555 45799999987443334444
No 97
>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...
Probab=23.29 E-value=60 Score=24.41 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=21.8
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 325 (405)
..|..+.|....... ..+.-.+.|||..+.++-.-+|
T Consensus 13 ~~G~~vtL~C~~~~~-~~~~~~v~Wyrq~~~~~~~~l~ 49 (116)
T 1a2y_B 13 APSQSLSITCTVSGF-SLTGYGVNWVRQPPGKGLEWLG 49 (116)
T ss_dssp CTTSCEEEEEEEESS-CTTSSEEEEEEECTTSCCEEEE
T ss_pred eCCCcEEEEEEEcCC-CcCCcEEEEEEeCCCCCcEEEE
Confidence 356666665443322 2356789999998744433444
No 98
>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...
Probab=23.05 E-value=62 Score=23.95 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=22.4
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
..|..+.+.......+ .-.|.|||-.+.++-..+|.
T Consensus 16 ~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~ 51 (109)
T 2q20_A 16 SVGDRVTITCQASQDI---SNYLNWYQQKPGKAPKLLIY 51 (109)
T ss_dssp CTTCCEEEEEEESSCC---TTCEEEEEECTTSCEEEEEE
T ss_pred cCCCcEEEEEeeccCC---CCcEEEEEECCCCCCEEEEE
Confidence 3567777766555444 45799999987444344443
No 99
>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A
Probab=22.84 E-value=65 Score=24.73 Aligned_cols=36 Identities=33% Similarity=0.422 Sum_probs=22.6
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccccc
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISG 327 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsG 327 (405)
.|..+.|.....+.+ .-.|.|||..+.++-..+|..
T Consensus 17 ~G~~vtL~C~~~~~~---~~~v~W~r~~~g~~~~~l~~~ 52 (119)
T 2e27_L 17 LGGKVTITCKANQDI---KKKIAWYQHKPGKGPRLLIYY 52 (119)
T ss_dssp TTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEET
T ss_pred CCCCEEEEEEeCCCC---CceEEEEEECCCCCCEEEEEE
Confidence 466666665545444 457999999875444445543
No 100
>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A
Probab=22.78 E-value=68 Score=23.91 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=22.3
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
..|..+.+.......+ .-.|.|||..+.++-.-+|.
T Consensus 17 ~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~ 52 (111)
T 1i3g_L 17 SVGDRVSITCKASQDV---GTAVAWYQQKPGQSPKLLIY 52 (111)
T ss_dssp CTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEE
T ss_pred cCCCCEEEEEEeCCCC---CCCEEEEEECCCCCCEEEEE
Confidence 3577777665544443 45799999987544444443
No 101
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=22.65 E-value=1.1e+02 Score=26.95 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhcccchhHhHHHhhhchhHHHhhhHHHHhHHhhhhchHHHHHHHHHHHHHhhccc
Q 015554 55 KEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRV 123 (405)
Q Consensus 55 KEvVakEta~L~~q~kRLSVRDLA~KFEKgl~~AakLs~EaK~reva~Ler~vLLKkLR~~LesLrGRv 123 (405)
|+-=-+.-.+++.++.+++|.|||..|. .|+.-=.|+..-|+.+-|++..+..-+..-+++
T Consensus 10 k~eR~~~i~~~l~~~~~~~~~~la~~~~--------vs~~TiRrDl~eL~~~~l~~r~~~~A~~~~~~~ 70 (190)
T 4a0z_A 10 KDKRREAIRQQIDSNPFITDHELSDLFQ--------VSIQTIRLDRTYLNIPELRKRIKLVAEKNYDQI 70 (190)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHT--------SCHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCEeHHHHHHHHC--------CCHHHHHHHHHHhcCcchhhHhhhhhhccchhh
Confidence 4444455678899999999999999996 455556788999999999999998876655544
No 102
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=22.62 E-value=6.9e+02 Score=26.23 Aligned_cols=92 Identities=21% Similarity=0.355 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhhcccCCCChhhHHHH--HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH----hhHHHHHHHHH
Q 015554 106 HVLLKKLRDALESLRGRVAGRNKDDVEEA--IAMVEALAVQLTQREGELIQEKAEVKKLADFLKK----ASEDAKKLVDE 179 (405)
Q Consensus 106 ~vLLKkLR~~LesLrGRvaGrnKddveea--ismVeaLavqltqrE~ELiQeK~EVkKlA~~lKq----ASeDAkkiV~e 179 (405)
..+++|+-.-|+.++--+.|..+.|.+|- |.++|.- |.-=..=.-.|...+++|+.-|.. =|.|=++||++
T Consensus 117 ~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekA---l~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~ 193 (526)
T 3iyk_A 117 DKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKA---VTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKE 193 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 35777888888888888888888877554 4444321 111111122344567788887765 46788899999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Q 015554 180 ERAFARAEIESARAAVQRVEESLQE 204 (405)
Q Consensus 180 ERa~A~aEIE~ArAaV~Rve~al~E 204 (405)
=|.+ |++-+.||..=.++++|
T Consensus 194 yr~k----~~aL~~aIe~Er~~~~E 214 (526)
T 3iyk_A 194 YRDK----IDALKNAIEVERDGMQE 214 (526)
T ss_pred HHHH----HHHHHHHHHHHHhHHHH
Confidence 8876 44555555554444444
No 103
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=22.42 E-value=90 Score=25.60 Aligned_cols=46 Identities=28% Similarity=0.338 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHH
Q 015554 109 LKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFAR 185 (405)
Q Consensus 109 LKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~ 185 (405)
-||+|-+..-+||. .|++|+...+. +=|.|++.-.++++...+||.
T Consensus 14 ~kK~r~va~~IrG~-------~v~~Al~~L~f------------------------~pkkaa~~v~k~L~sA~aNAe 59 (110)
T 3r8s_S 14 AQKVRLVADLIRGK-------KVSQALDILTY------------------------TNKKAAVLVKKVLESAIANAE 59 (110)
T ss_dssp HHHHHHHHHHHTTC-------BHHHHHHHHHH------------------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-------cHHHHHHHHhh------------------------CCHHHHHHHHHHHHHHHHhHH
Confidence 58999999999986 57889888662 345667777788888777774
No 104
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}
Probab=22.32 E-value=76 Score=24.70 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=22.2
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccc
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 325 (405)
.|..+.|.......+ +.-.+.|||..+.++-.-+|
T Consensus 15 ~G~~vtL~C~~s~~~--~~~~v~Wyrq~~g~~~~~l~ 49 (129)
T 3rrq_A 15 EGDNATFTCSFSNTS--ESFVLNWYRMSPSNQTDKLA 49 (129)
T ss_dssp TTSCEEEEEECCCCC---CEEEEEEEEESTTSCEEEE
T ss_pred CCCCEEEEeEecCCC--CCcEEEEeEeCCCCCccEEE
Confidence 577787776655433 46789999988754433333
No 105
>1zvh_A Immunoglobulin heavy chain antibody variable domain; beta sandwich, immunoglobulin fold, protein-protein heterocomplex; 1.50A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 3dwt_A 1g6v_K 1zv5_A 1kxq_E
Probab=22.17 E-value=52 Score=26.01 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=22.0
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
.|..+.|...... ...+.-.|.|||..+..+-.-||.
T Consensus 14 ~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l~~ 50 (134)
T 1zvh_A 14 AGGSLRLSCAASG-YIASINYLGWFRQAPGKEREGVAA 50 (134)
T ss_dssp TTCCEEEEEEEEE-SGGGEEEEEEEEECTTSCCEEEEE
T ss_pred cCCCEEEEEEeCC-CCcCCcEEEEEEECCCCCCEEEEE
Confidence 5667766554332 123456799999998544444443
No 106
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=22.14 E-value=73 Score=25.42 Aligned_cols=19 Identities=21% Similarity=0.532 Sum_probs=14.8
Q ss_pred HHHHHhcccchhHhHHHhh
Q 015554 64 QLLEQQKRLSVRDLANKFE 82 (405)
Q Consensus 64 ~L~~q~kRLSVRDLA~KFE 82 (405)
+++.++.++||.|||..|.
T Consensus 9 ~~L~~~g~vsv~eLA~~l~ 27 (87)
T 2k02_A 9 DMLALQGRMEAKQLSARLQ 27 (87)
T ss_dssp HHHHHSCSEEHHHHHHHTT
T ss_pred HHHHHcCCCcHHHHHHHHC
Confidence 5677788888888888884
No 107
>3g9a_B Minimizer; antibody complex, chromophore, luminescence, photoprotein, fluorescent protein/immune system complex, nanobody; HET: GYS; 1.61A {Lama pacos} SCOP: b.1.1.1
Probab=22.13 E-value=2.3e+02 Score=23.25 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=23.0
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 325 (405)
..|..+.|...... .+.+.-.+.|||..+...-+-|+
T Consensus 15 ~~G~sVtL~C~~s~-~~~~~~~v~WyrQ~~g~~p~~L~ 51 (139)
T 3g9a_B 15 QAGGSLRLSCAASG-DTFSSYSMAWFRQAPGKECELVS 51 (139)
T ss_dssp CTTCCEEEEEEECS-SCGGGSEEEEEEECTTSCEEEEE
T ss_pred ecCCCEEEEEEEcC-CccCCcEEEEEEECCCCCcEEEE
Confidence 35777777654332 23456789999998844434443
No 108
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=22.06 E-value=35 Score=29.83 Aligned_cols=45 Identities=27% Similarity=0.609 Sum_probs=32.7
Q ss_pred ceeEEEecCCCCc--------cccccccccccccCCCCcccceeeeEeecCCeEEEE
Q 015554 309 SIQWYRVPSEGGK--------RELISGATKSVYAPEPFDVGRILQAEITYNGQQITL 357 (405)
Q Consensus 309 siQWyRv~~~gsk--------~E~IsGAtk~~YAPEP~DVGr~LqadI~~~g~k~~~ 357 (405)
.=+||=|..+|-- .-++-|-.||.|.|. .|.|.++ |+.|.+++.+
T Consensus 12 ~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~-~d~Gd~V---VViNaeki~~ 64 (142)
T 3r8s_J 12 KRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPH-VDTGDYI---IVLNADKVAV 64 (142)
T ss_dssp CCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTT-SCCCCEE---EEECGGGCBC
T ss_pred cCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCC-ccCCCEE---EEEeCcccCc
Confidence 3479988876543 235679999999998 7999874 4566666555
No 109
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Probab=21.99 E-value=71 Score=24.30 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=16.5
Q ss_pred cCcceeEeeCCCCCC-----CCCCcceeEEEecCCCC
Q 015554 289 LGSYLRIKPCSNNGP-----ELSKCSIQWYRVPSEGG 320 (405)
Q Consensus 289 LGS~L~i~~~~d~~~-----dlSkcsiQWyRv~~~gs 320 (405)
.|+...|...-. .+ +.+.-.|.|||..+..+
T Consensus 20 ~G~~v~L~C~~~-~~~~~~~~~~~~~v~W~~~~~~~~ 55 (132)
T 1nko_A 20 EGMCVHVRCSFS-YPVDSDTDSDPVHGYWFRAGNDIS 55 (132)
T ss_dssp TTCCEEECEEEE-CCCCTTTTTSCCEEEEEEC-----
T ss_pred CCCeEEEEcccc-CCCccccCCCccEEEEEECCCCCC
Confidence 577776644322 22 44567899999887443
No 110
>1cpq_A Cytochrome C'; electron transport; HET: HEM; 1.72A {Rhodobacter capsulatus} SCOP: a.24.3.2 PDB: 1eky_A 1nbb_A* 1rcp_A* 1cpr_A*
Probab=21.99 E-value=2.4e+02 Score=23.06 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=58.1
Q ss_pred hchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHH---HHh-----hhh---hh------hhHHHHHHHHHHHHH
Q 015554 103 LEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALA---VQL-----TQR---EG------ELIQEKAEVKKLADF 165 (405)
Q Consensus 103 Ler~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLa---vql-----tqr---E~------ELiQeK~EVkKlA~~ 165 (405)
=+|+.++|.++..+..|.+=+-|...-|-+.+..-...|+ ..+ |.. +| ++-++..+.++++.-
T Consensus 8 ~~Rq~~m~~m~~~~~~l~~m~kg~~~~d~~~~~~~A~~l~~~a~~~~F~~gs~~~~~~g~s~A~p~IW~~~~~F~~~~~~ 87 (129)
T 1cpq_A 8 EAREAYFKSLGGSMKAMTGVAKAFDAEAAKVEAAKLEKILATDVAPLFPAGTSSTDLPGQTEAKAAIWANMDDFGAKGKA 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCCCGGGCCTTCSTTTSTTTCCBCTHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcccCCCCCCCcccccCCccccCHHHHhCHHHHHHHHHH
Confidence 3688999999999999999999995555444444444443 333 110 01 244577888888888
Q ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 015554 166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESL 202 (405)
Q Consensus 166 lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al 202 (405)
|..|....-... ... ..+..++++..|++.-
T Consensus 88 ~~~aa~~L~~aA---~~g---D~~~~~~a~~~v~~~C 118 (129)
T 1cpq_A 88 MHEAGGAVIAAA---NAG---DGAAFGAALQKLGGTC 118 (129)
T ss_dssp HHHHHHHHHHHH---HHT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hcC---CHHHHHHHHHHHHhHH
Confidence 887766543222 111 2455666777766543
No 111
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1
Probab=21.88 E-value=74 Score=25.59 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=21.8
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccc
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 325 (405)
.|..+.|........ ++-.|.|||..+.++-.-||
T Consensus 14 ~G~~vtL~C~~s~~~--~~~~v~Wyrq~~g~~~~~l~ 48 (142)
T 2ol3_A 14 EKTTVTMDCVYETQD--SSYFLFWYKQTASGEIVFLI 48 (142)
T ss_dssp TTCCEEECCBCCCCC--SSCEEEEEEECTTCCEEEEE
T ss_pred cCCCEEEEEEecCCc--CCceEEEEEeCCCCCcEEEE
Confidence 577777765544332 34579999998854444444
No 112
>1mqk_H Antibody 7E2 FV fragment, heavy chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_C 3ehb_C* 3hb3_C* 1qle_H* 2otu_B 2gsg_B 2otw_B 1qfw_I* 3ab0_B 1i8k_B 1i8i_B 1vhp_A 1bfv_H* 1cfv_H* 2bfv_H* 1dsf_H
Probab=21.76 E-value=86 Score=24.14 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=20.9
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccc
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 325 (405)
.|..+.|...... ...+.-.+.|||..+..+-.-+|
T Consensus 14 ~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l~ 49 (127)
T 1mqk_H 14 PGGSLKLSCAASG-FTFSSYTMSWVRQTPEKRLEWVA 49 (127)
T ss_dssp TTCCEEEEEEEES-SCGGGSCEEEEEECTTCCEEEEE
T ss_pred CCCCEEEEEEeCC-CccCCcEEEEEEECCCCCCEEEE
Confidence 4666666544332 12245679999998844434443
No 113
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=21.74 E-value=78 Score=25.81 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=15.7
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCC
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSE 318 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~ 318 (405)
.|..+.+....+. ..-.|.|||..+.
T Consensus 16 ~G~~v~L~C~~~~----~~~~v~W~k~~~~ 41 (240)
T 3q5y_A 16 KGGRSVLTCIPIS----GHSNVVWYQQTLG 41 (240)
T ss_dssp TTCCEEEEEECCT----TCCEEEEEEECTT
T ss_pred CCCcEEEEEEeCC----CCceEEEEEECCC
Confidence 4666666543332 3458999996653
No 114
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A
Probab=21.70 E-value=2.1e+02 Score=21.58 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=18.4
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCC
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEG 319 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~g 319 (405)
.|..+.|........ +.-.+.|||..+.+
T Consensus 14 ~G~~vtL~C~~~~~~--~~~~v~Wyrq~~g~ 42 (114)
T 2hp4_A 14 LGETVELKCQVLLSN--PTSGASWLFQPRGA 42 (114)
T ss_dssp TTCCEEEEEEECCSS--CCSCEEEEEEESSS
T ss_pred CCCCEEEEEEeecCC--CCceEEEEEECCCC
Confidence 566776665544222 34579999998743
No 115
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=21.59 E-value=34 Score=30.94 Aligned_cols=45 Identities=22% Similarity=0.450 Sum_probs=32.6
Q ss_pred ceeEEEecCCCCc--------cccccccccccccCCCCcccceeeeEeecCCeEEEE
Q 015554 309 SIQWYRVPSEGGK--------RELISGATKSVYAPEPFDVGRILQAEITYNGQQITL 357 (405)
Q Consensus 309 siQWyRv~~~gsk--------~E~IsGAtk~~YAPEP~DVGr~LqadI~~~g~k~~~ 357 (405)
.=+||=|..+|-. .-++-|-.||.|.|. .|.|.++ |+.|.+++.+
T Consensus 38 ~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~-~D~GD~V---VVINAeki~l 90 (174)
T 2zjr_G 38 EQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPN-MIQGDFV---VVINAAQVAL 90 (174)
T ss_dssp CCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSS-SCCCCEE---EEECCTTCBC
T ss_pred cccEEEEeCCCCchHHHHHHHHHHHhccCCCccCcc-ccCCCEE---EEEeCeeeEe
Confidence 4569988876543 245789999999997 7999886 4455555444
No 116
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Probab=21.53 E-value=56 Score=31.05 Aligned_cols=46 Identities=11% Similarity=0.252 Sum_probs=32.1
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccccc----cccccccCC
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISG----ATKSVYAPE 336 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsG----Atk~~YAPE 336 (405)
-|..|++.....+ -.+++..|.|+|..| |--.|-|.. ....-|||-
T Consensus 145 PG~Sl~LSC~aSG-~tfs~y~~~WvRQaP-GkgLEwvg~I~~~~g~t~Ya~s 194 (259)
T 4f9l_D 145 PGASVKLSCKASG-YTFTRYYLYWVKQRP-GQGLEWIGEINPNNGGTKFNEK 194 (259)
T ss_dssp SSSCEEEEEEEES-SCGGGSCEEEEEECT-TSCEEEEEEECTTTCCEEECTT
T ss_pred CCCcEEEEEeeeC-CCcccCcEEEEEECC-CCceEEEeEEeCCCCceEecHh
Confidence 4788888866543 578899999999998 666665532 234567764
No 117
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=21.41 E-value=1.1e+02 Score=24.96 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=17.4
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCC
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGG 320 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gs 320 (405)
.|+...+.....+. ..-.|.|||-.+.++
T Consensus 15 ~G~~v~L~C~~~~~---~~~~v~W~r~~~~~~ 43 (246)
T 4dzb_B 15 SGTSVKIECRSLDF---QATTMFWYRQFPKQS 43 (246)
T ss_dssp TTSCEEEEEEESSS---CCCSEEEEEECTTSC
T ss_pred CCCcEEEEeEecCC---CceEEEEEEECCCCC
Confidence 46666665534433 345799999665433
No 118
>1u69_A Hypothetical protein; structural genomics, MSCG, pseudomonas aeruginosa PAO1, HYPO protein, protein structure initiative (PSI); 1.60A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=21.33 E-value=85 Score=27.13 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.7
Q ss_pred CCCCcccceeeeEeecCCeEEEEeecCC
Q 015554 335 PEPFDVGRILQAEITYNGQQITLTTTGA 362 (405)
Q Consensus 335 PEP~DVGr~LqadI~~~g~k~~~~T~GP 362 (405)
|.|-| |+++.|++..+|..+.+...||
T Consensus 44 ~~~~~-g~Vmhael~i~g~~~m~~d~~p 70 (163)
T 1u69_A 44 PSGKE-GDVLTVEFRVMGIPCLGLNGGP 70 (163)
T ss_dssp TTBCT-TSEEEEEEEETTEEEEEEECCT
T ss_pred CCCCC-CeEEEEEEEECCEEEEEECCCC
Confidence 44434 9999999999999999988777
No 119
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=21.30 E-value=89 Score=25.63 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHH
Q 015554 109 LKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFAR 185 (405)
Q Consensus 109 LKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~ 185 (405)
-||+|-+..-+||+ .|++|+...+. +=|.|++.-.|++....+||.
T Consensus 14 pkK~r~va~~IrG~-------~v~~Al~~L~~------------------------~pkkaa~~v~klL~sA~aNAe 59 (110)
T 1i4j_A 14 PRKVRLVVDLIRGK-------SLEEARNILRY------------------------TNKRGAYFVAKVLESAAANAV 59 (110)
T ss_dssp HHHHHHHHHHHTTC-------BHHHHHHHHHH------------------------CCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-------cHHHHHHHHHH------------------------CCHHHHHHHHHHHHHHHHhHH
Confidence 48999999999986 58889888664 556677788888888888774
No 120
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=21.09 E-value=95 Score=23.58 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=26.9
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc-ccccccccCCCCcccce
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS-GATKSVYAPEPFDVGRI 343 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is-GAtk~~YAPEP~DVGr~ 343 (405)
..|.-+.+.....+.| ....|+||| +|. .+-. ......+...+-|-|.|
T Consensus 17 ~~G~~v~l~C~~~~~p--~~~~~~W~~---~g~--~~~~~~~~~~~~~~~~~d~G~Y 66 (170)
T 3ry4_A 17 LQEDSVTLTCQGARSP--ESDSIQWFH---NGN--LIPTHTQPSYRFKANNNDSGEY 66 (170)
T ss_dssp ETTCEEEEEEESCCCS--SSSCEEEEE---TTE--ECTTCCSSEEEEECCGGGCEEE
T ss_pred ECCCcEEEEEEecCCC--CcceEEEEE---CCe--EcccCccceEEEecccccCeEE
Confidence 3577777776666554 245799998 121 1111 12222345566777754
No 121
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=21.08 E-value=1.3e+02 Score=25.00 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=18.5
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccc
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 325 (405)
.|+.+.+.....+.| .-.|.|||..+.+...-++
T Consensus 16 ~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~ 49 (259)
T 3omz_A 16 TGSSAEITCDLAEGS---TGYIHWYLHQEGKAPQRLL 49 (259)
T ss_dssp TTCCEEEECCC--------CEEEEEEECTTSCCEEEE
T ss_pred CCCcEEEEEEEccCC---CcEEEEEEECCCCCcEEEE
Confidence 466677665545444 4579999977654443333
No 122
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=20.92 E-value=2.3e+02 Score=20.11 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=13.1
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHH
Q 015554 165 FLKKASEDAKKLVDEERAFARAEI 188 (405)
Q Consensus 165 ~lKqASeDAkkiV~eERa~A~aEI 188 (405)
.+.+|-..|.+++++.+..|+.|.
T Consensus 14 Ii~~A~~~a~~~~~e~~~~A~~ea 37 (61)
T 1l2p_A 14 IIEQANKRRSQILDEAKAEAEQER 37 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555443
No 123
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=20.89 E-value=4.5e+02 Score=23.46 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=13.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhHHH
Q 015554 145 LTQREGELIQEKAEVKKLADFLKKASEDA 173 (405)
Q Consensus 145 ltqrE~ELiQeK~EVkKlA~~lKqASeDA 173 (405)
+.+-+.+|.+-++++...-.-+++|..+.
T Consensus 71 ~~~~~a~l~~~~a~l~~a~~~~~~a~~~~ 99 (341)
T 3fpp_A 71 IKEVEATLMELRAQRQQAEAELKLARVTY 99 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555444444444444433
No 124
>2vyr_E Human single domain antibody; zinc, complex, nucleus, human MDM4, immune system, zinc-finger, polymorphism, metal-binding; 2.00A {Homo sapiens} PDB: 1igm_H 2a9n_H* 2a9m_H
Probab=20.80 E-value=83 Score=25.83 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=23.3
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCcccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELIS 326 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 326 (405)
..|..+.|.....+. .++.-.+.|||..+..+-+-+|.
T Consensus 13 ~~G~svtL~C~~s~~-~~~~~~v~Wyrq~~g~~~~~l~~ 50 (153)
T 2vyr_E 13 QPGGSLRLSCAASGF-TFEEYAMLWVRQAPGKGLEWVSG 50 (153)
T ss_dssp CTTCCEEEEEEEESS-CGGGCCEEEEEECTTSCCEEEEE
T ss_pred ecCCCEEEEEEEeCC-ccCCCEEEEEEECCCCCcEEEEE
Confidence 457777776553321 23466799999998544444543
No 125
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*
Probab=20.49 E-value=84 Score=22.34 Aligned_cols=31 Identities=6% Similarity=-0.057 Sum_probs=19.8
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCC
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEG 319 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~g 319 (405)
.|+...+.......++.+.-.|.|||..+.+
T Consensus 8 ~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~ 38 (109)
T 2oyp_A 8 VGKNAYLPCSYTLPTSGTLVPMCWGKGFCPW 38 (109)
T ss_dssp TTSCEEECCBCCCCTTCCCCCEEEESSSCCS
T ss_pred cCCCEEEEEEeECCCCCCeEEEEEEecCCCC
Confidence 4666666544455555555679999987643
No 126
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=20.47 E-value=4e+02 Score=23.59 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=10.7
Q ss_pred CCChhhHHHHHHHHHHHH
Q 015554 125 GRNKDDVEEAIAMVEALA 142 (405)
Q Consensus 125 GrnKddveeaismVeaLa 142 (405)
|-++++|++.+.-.+.++
T Consensus 115 ~Ls~eei~~~~~~~~~~~ 132 (227)
T 1u00_A 115 GLTDSEIASMIKDSMSYA 132 (227)
T ss_dssp CCCHHHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHhhh
Confidence 456777777655544444
No 127
>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B
Probab=20.15 E-value=62 Score=24.52 Aligned_cols=37 Identities=11% Similarity=0.231 Sum_probs=21.7
Q ss_pred ccCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccc
Q 015554 288 ALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELI 325 (405)
Q Consensus 288 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 325 (405)
..|..+.|....... ..+.-.|.|||..+.++-.-++
T Consensus 13 ~~G~~vtL~C~~~~~-~~~~~~v~Wyrq~~~~~~~~l~ 49 (121)
T 1j05_H 13 EPGASVKLSCTASGF-NIKDTYMHWVKQRPEQGLEWIG 49 (121)
T ss_dssp CTTCCEEEEEEEESS-CGGGSEEEEEEECTTCCEEEEE
T ss_pred eCCCcEEEEEEecCc-ccCCcEEEEEEECCCCCcEEEE
Confidence 357777665543322 2245689999998744433344
No 128
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=20.14 E-value=92 Score=25.47 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=17.2
Q ss_pred cCcceeEeeCCCCCCCCCCcceeEEEecCCCC
Q 015554 289 LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGG 320 (405)
Q Consensus 289 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gs 320 (405)
.|..+.+.....+. ..-.|.|||..+.++
T Consensus 15 ~G~~v~L~C~~~~~---~~~~v~W~k~~~~~~ 43 (245)
T 3nfj_J 15 VGSPLSLECTVEGT---SNPNLYWYRQAAGRG 43 (245)
T ss_dssp TTCCEEEEEEEESC---SSCEEEEEEESTTSC
T ss_pred CCCCEEEEEEecCC---CCceEEEEEECCCCC
Confidence 45666655444433 345799999665433
Done!