Query 015555
Match_columns 405
No_of_seqs 143 out of 165
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 07:24:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 9E-125 2E-129 909.9 26.3 291 68-383 3-293 (294)
2 TIGR01556 rhamnosyltran L-rham 93.6 0.27 5.8E-06 46.3 7.7 127 184-324 72-201 (281)
3 cd04185 GT_2_like_b Subfamily 92.2 0.45 9.8E-06 41.8 6.6 101 184-329 78-178 (202)
4 cd04186 GT_2_like_c Subfamily 91.2 0.53 1.1E-05 39.0 5.6 91 185-324 74-165 (166)
5 cd02510 pp-GalNAc-T pp-GalNAc- 91.2 5.4 0.00012 38.1 13.1 139 184-326 82-227 (299)
6 cd02526 GT2_RfbF_like RfbF is 85.8 2 4.3E-05 38.5 5.9 126 185-324 75-204 (237)
7 cd02520 Glucosylceramide_synth 83.6 1.4 3E-05 39.2 3.9 92 184-324 85-176 (196)
8 PF01762 Galactosyl_T: Galacto 81.6 6.6 0.00014 35.7 7.5 176 91-307 6-186 (195)
9 PF13641 Glyco_tranf_2_3: Glyc 81.4 2.4 5.3E-05 37.9 4.6 192 111-324 3-210 (228)
10 cd04195 GT2_AmsE_like GT2_AmsE 78.8 1.3 2.9E-05 38.6 2.0 40 183-222 78-118 (201)
11 cd06442 DPM1_like DPM1_like re 78.7 1.3 2.9E-05 39.2 2.0 36 184-219 77-112 (224)
12 cd06433 GT_2_WfgS_like WfgS an 71.9 5.9 0.00013 33.8 4.1 37 184-220 74-111 (202)
13 PLN02726 dolichyl-phosphate be 69.2 6.9 0.00015 36.2 4.3 109 108-221 8-129 (243)
14 COG1216 Predicted glycosyltran 68.3 24 0.00051 34.3 7.9 138 186-330 85-226 (305)
15 cd06437 CESA_CaSu_A2 Cellulose 67.6 7.2 0.00016 35.3 4.0 126 184-324 86-213 (232)
16 PF00535 Glycos_transf_2: Glyc 65.9 4.9 0.00011 32.7 2.4 38 184-221 77-114 (169)
17 cd04188 DPG_synthase DPG_synth 65.8 3.1 6.6E-05 37.2 1.2 36 184-219 81-116 (211)
18 cd06434 GT2_HAS Hyaluronan syn 65.2 3.8 8.1E-05 36.7 1.6 41 184-224 76-116 (235)
19 PF09258 Glyco_transf_64: Glyc 64.4 8.7 0.00019 37.3 4.1 95 118-213 8-103 (247)
20 cd06421 CESA_CelA_like CESA_Ce 63.7 6.2 0.00013 35.1 2.7 123 184-324 83-211 (234)
21 cd02525 Succinoglycan_BP_ExoA 61.4 6.9 0.00015 34.9 2.6 126 184-324 80-208 (249)
22 cd06435 CESA_NdvC_like NdvC_li 57.3 6.4 0.00014 35.4 1.7 37 185-221 84-120 (236)
23 KOG2264 Exostosin EXT1L [Signa 51.7 18 0.00038 40.4 4.1 96 117-213 631-752 (907)
24 PTZ00260 dolichyl-phosphate be 48.0 20 0.00043 35.9 3.7 188 108-317 69-285 (333)
25 cd06423 CESA_like CESA_like is 41.4 17 0.00038 29.3 1.8 38 185-222 78-116 (180)
26 cd00761 Glyco_tranf_GTA_type G 41.2 24 0.00053 27.7 2.5 22 185-206 77-98 (156)
27 PF12621 DUF3779: Phosphate me 40.0 24 0.00052 29.8 2.4 43 175-221 34-76 (95)
28 PF10111 Glyco_tranf_2_2: Glyc 39.9 37 0.0008 32.8 4.0 95 113-208 2-111 (281)
29 cd04184 GT2_RfbC_Mx_like Myxoc 39.7 24 0.00052 30.7 2.5 38 184-221 82-120 (202)
30 PF13506 Glyco_transf_21: Glyc 38.9 22 0.00048 32.4 2.2 122 184-324 30-153 (175)
31 cd04192 GT_2_like_e Subfamily 38.8 25 0.00054 30.9 2.4 38 184-221 81-118 (229)
32 cd04196 GT_2_like_d Subfamily 35.8 30 0.00066 30.0 2.5 46 274-324 158-203 (214)
33 cd06439 CESA_like_1 CESA_like_ 35.2 23 0.0005 32.2 1.7 40 184-223 108-147 (251)
34 cd02522 GT_2_like_a GT_2_like_ 34.7 30 0.00064 30.6 2.3 41 184-224 71-111 (221)
35 cd06427 CESA_like_2 CESA_like_ 33.9 39 0.00084 31.0 3.0 38 184-221 83-122 (241)
36 TIGR03469 HonB hopene-associat 31.4 46 0.001 33.7 3.3 33 186-218 134-166 (384)
37 cd06420 GT2_Chondriotin_Pol_N 30.3 35 0.00077 29.1 2.0 27 184-210 78-104 (182)
38 PHA03165 hypothetical protein; 28.3 43 0.00093 26.1 1.9 32 30-70 23-54 (57)
39 PF12996 DUF3880: DUF based on 27.9 30 0.00065 27.9 1.0 25 180-214 13-37 (79)
40 KOG2287 Galactosyltransferases 27.6 96 0.0021 31.7 4.8 185 81-308 100-293 (349)
41 KOG3708 Uncharacterized conser 26.7 32 0.00069 38.1 1.2 142 138-327 52-197 (681)
42 PF09828 Chrome_Resist: Chroma 25.6 48 0.001 30.4 2.0 48 171-224 15-80 (135)
43 PF02593 dTMP_synthase: Thymid 25.3 3.2E+02 0.007 26.8 7.7 90 114-221 2-110 (217)
44 cd06430 GT8_like_2 GT8_like_2 25.2 1.5E+02 0.0032 30.3 5.6 102 111-214 2-124 (304)
45 PRK10073 putative glycosyl tra 25.1 66 0.0014 32.1 3.1 107 108-219 5-119 (328)
46 KOG2547 Ceramide glucosyltrans 25.0 1.1E+02 0.0023 32.9 4.7 165 109-316 113-289 (431)
47 cd06913 beta3GnTL1_like Beta 1 24.8 77 0.0017 28.4 3.2 31 184-214 83-113 (219)
48 KOG1555 26S proteasome regulat 23.5 38 0.00082 35.0 1.0 41 255-295 80-120 (316)
49 PF11057 Cortexin: Cortexin of 22.0 86 0.0019 26.5 2.6 49 1-49 1-52 (81)
50 cd06438 EpsO_like EpsO protein 21.6 93 0.002 27.2 3.0 29 184-212 80-108 (183)
51 PF13632 Glyco_trans_2_3: Glyc 20.7 62 0.0014 28.4 1.7 38 188-225 1-38 (193)
52 TIGR03472 HpnI hopanoid biosyn 20.6 72 0.0015 32.1 2.4 36 184-219 125-160 (373)
53 PLN02867 Probable galacturonos 20.3 41 0.00089 37.0 0.6 34 175-209 334-367 (535)
54 PLN03193 beta-1,3-galactosyltr 20.2 1.1E+02 0.0023 32.8 3.6 110 82-213 145-261 (408)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=9.5e-125 Score=909.87 Aligned_cols=291 Identities=60% Similarity=1.129 Sum_probs=277.8
Q ss_pred cccCCCCCCCCCCCccccCCCcccccCCCCCCcCcccCCCCCccEEEEeccCcccccHHHHHhhcCCCCcEEEEEEeCCC
Q 015555 68 SRFSSGRLKSLPRGIVQARSDLELRPLWSTSSSRKKFGVYSNRNLLAIPAGIKQKDNVDAIVRKFLPENFTVILFHYDGD 147 (405)
Q Consensus 68 ~~~~~~g~e~LP~giv~~~sd~~lr~Lwg~p~~~~~~~~~~~k~Lva~~VG~kqk~~Vd~~v~kf~~~nFdv~LFhYDg~ 147 (405)
.+++|+|+|+||+|||+++|||+||||||.|+++. +..+|||||||||+|||++||++|+|| ++|||||||||||+
T Consensus 3 ~~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~---~~~~k~Lla~~VG~kqk~~vd~~v~Kf-~~nF~i~LfhYDg~ 78 (294)
T PF05212_consen 3 VPCNPRGAERLPPGIVVRESDLELRPLWGNPSEDL---PKKPKYLLAMTVGIKQKDNVDAIVKKF-SDNFDIMLFHYDGR 78 (294)
T ss_pred cCCCCCccccCCCCccccCCCceeeecCCCccccc---cCCCceEEEEEecHHHHhhhhHHHhhh-ccCceEEEEEecCC
Confidence 46899999999999999999999999999999887 457899999999999999999999999 89999999999999
Q ss_pred CCccCCcCCCCceeEEEeeccchhhhhccccCccccCCccEEEEecCccccCCCCHHHHHHHHHHhCCccccCCcCCCCC
Q 015555 148 VNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNST 227 (405)
Q Consensus 148 vd~W~d~~ws~~aiHv~a~kqtKWw~akRfLHPdiva~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~ 227 (405)
+|+|++|+||++||||++.|||||||||||||||||++|||||||||||+||+|+|+|||+||++||||||||||+++++
T Consensus 79 vd~w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~ 158 (294)
T PF05212_consen 79 VDEWDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSS 158 (294)
T ss_pred cCchhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ceeeeeeeeccCcccceeeecccCCcccCCCCCCCCccceEEeeccccChhHHHHHhhhhccCCccccchhhhhhhhhcC
Q 015555 228 EIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQG 307 (405)
Q Consensus 228 ~i~h~iT~R~~~~~vHr~~~~~~g~~~C~~~s~~ppcT~FVEiMAPVFSR~Awrcvw~miqNDlvhGWGLDf~w~~Ca~g 307 (405)
++||+||+|++.++||| +.++.+.|.+++++||||||||||||||||+||+||||||||||+|||||||+|++|+ +
T Consensus 159 ~~~~~iT~R~~~~~vhr---~~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~-~ 234 (294)
T PF05212_consen 159 EIHHPITKRRPDSEVHR---KTRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCA-G 234 (294)
T ss_pred eeeeeEEeecCCceeEe---ccCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHh-c
Confidence 99999999999999998 4577888999999999999999999999999999999999999999999999999999 5
Q ss_pred CCCCeEEEEeeeeEEecCCCCCCCCCCCccccchhhhHHhhhcCCCCCCcchHHHHHhhHHHHHHHHHHHHHHHhc
Q 015555 308 DRTKNVGIIDSEYVVHQGIQTLGGQPPTRKSLQSTKREELAKRHGPAPVDLRAEIRRQSTMELQIFKKRWNEAIEQ 383 (405)
Q Consensus 308 ~~~~kiGVVDa~~VvH~g~ptlGg~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~VR~rs~~E~~~F~~Rw~~A~~~ 383 (405)
++++||||||||||+|+|+|||||++.+.+ +.++|.+||+||++||++|++||++|++|
T Consensus 235 ~~~~kiGVVDs~~VvH~gvptLG~~~~~~~-----------------~~~~~~~Vr~r~~~E~~~F~~R~~~a~~~ 293 (294)
T PF05212_consen 235 DRHKKIGVVDSQYVVHTGVPTLGGQGNSEK-----------------GKDPREEVRRRSFAEMRIFQKRWANAVKE 293 (294)
T ss_pred cccccEEEEeeEEEEEcCCCcCCCcccccc-----------------CCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999865432 23578999999999999999999999986
No 2
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=93.64 E-value=0.27 Score=46.32 Aligned_cols=127 Identities=14% Similarity=0.085 Sum_probs=72.4
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHHh--CCccccCCc-CCCCCceeeeeeeeccCcccceeeecccCCcccCCCCC
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSE--GFEISQPAL-DPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISE 260 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~~--gLeISQPAL-d~~s~~i~h~iT~R~~~~~vHr~~~~~~g~~~C~~~s~ 260 (405)
+.||||++.|+|..++.-.+.++++.+++. +.-+..|.. +.+.+ ...+...... . .-+.. .... .+
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~-------~~~~-~~ 140 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTS-RRLPAIHLDG-L-LLRQI-------SLDG-LT 140 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCc-ccCCceeecc-c-ceeee-------cccc-cC
Confidence 379999999999999998999999988876 567777764 33221 1122211111 0 00000 0000 00
Q ss_pred CCCccceEEeeccccChhHHHHHhhhhccCCccccchhhhhhhhhcCCCCCeEEEEeeeeEEec
Q 015555 261 GPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQ 324 (405)
Q Consensus 261 ~ppcT~FVEiMAPVFSR~Awrcvw~miqNDlvhGWGLDf~w~~Ca~g~~~~kiGVVDa~~VvH~ 324 (405)
.+.-+.++=.-+.+++|++++.+= ++..++ -.++.|.-|..-+. ..+.+|.++....+.|.
T Consensus 141 ~~~~~~~~~~sg~li~~~~~~~iG-~fde~~-fi~~~D~e~~~R~~-~~G~~i~~~~~~~~~H~ 201 (281)
T TIGR01556 141 TPQKTSFLISSGCLITREVYQRLG-MMDEEL-FIDHVDTEWSLRAQ-NYGIPLYIDPDIVLEHR 201 (281)
T ss_pred CceeccEEEcCcceeeHHHHHHhC-CccHhh-cccchHHHHHHHHH-HCCCEEEEeCCEEEEEe
Confidence 111111111112368999998763 444434 34567766653333 13578999999999997
No 3
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.20 E-value=0.45 Score=41.83 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=65.2
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHHhCCccccCCcCCCCCceeeeeeeeccCcccceeeecccCCcccCCCCCCCC
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGPP 263 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~g~~~C~~~s~~pp 263 (405)
+.+|||++.|+|..++.-.+.++.+.++..++.+..|..-...+ +
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-----------------------------------~ 122 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-----------------------------------S 122 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-----------------------------------c
Confidence 57999999999999998888888888764455444443221110 1
Q ss_pred ccceEEeeccccChhHHHHHhhhhccCCccccchhhhhhhhhcCCCCCeEEEEeeeeEEecCCCCC
Q 015555 264 CTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQGIQTL 329 (405)
Q Consensus 264 cT~FVEiMAPVFSR~Awrcvw~miqNDlvhGWGLDf~w~~Ca~g~~~~kiGVVDa~~VvH~g~ptl 329 (405)
+.+ -+++|++|..+ ..+. +.-..||=|.-+..-+.. .+.++ .+.+..+.|....+.
T Consensus 123 ~~~------~~~~~~~~~~~-g~~~-~~~~~~~eD~~~~~r~~~-~G~~i-~~~~~~~~h~~~~~~ 178 (202)
T cd04185 123 FVG------VLISRRVVEKI-GLPD-KEFFIWGDDTEYTLRASK-AGPGI-YVPDAVVVHKTAINK 178 (202)
T ss_pred eEE------EEEeHHHHHHh-CCCC-hhhhccchHHHHHHHHHH-cCCcE-EecceEEEEcccccc
Confidence 111 24888888866 2332 334678877665543331 35688 999999999954443
No 4
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.24 E-value=0.53 Score=38.98 Aligned_cols=91 Identities=19% Similarity=0.149 Sum_probs=60.1
Q ss_pred CccEEEEecCccccCCCCHHHHHHHHHHh-CCccccCCcCCCCCceeeeeeeeccCcccceeeecccCCcccCCCCCCCC
Q 015555 185 NYDYIFLWDEDLGVENFDPRRYLEIVKSE-GFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGPP 263 (405)
Q Consensus 185 ~YDYIflwDDDL~vd~f~i~ryf~Ivr~~-gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~g~~~C~~~s~~pp 263 (405)
.+|||++.|+|..++...+.++.+.+.+. +..+..+.
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------------------ 111 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------------------ 111 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------------------
Confidence 79999999999999888888888754432 22222222
Q ss_pred ccceEEeeccccChhHHHHHhhhhccCCccccchhhhhhhhhcCCCCCeEEEEeeeeEEec
Q 015555 264 CTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQ 324 (405)
Q Consensus 264 cT~FVEiMAPVFSR~Awrcvw~miqNDlvhGWGLDf~w~~Ca~g~~~~kiGVVDa~~VvH~ 324 (405)
+=.-+.+|++++++.+- .+.. ....+|-|..+...+.. .+.+|..+....+.|.
T Consensus 112 ----~~~~~~~~~~~~~~~~~-~~~~-~~~~~~eD~~~~~~~~~-~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 112 ----VSGAFLLVRREVFEEVG-GFDE-DFFLYYEDVDLCLRARL-AGYRVLYVPQAVIYHH 165 (166)
T ss_pred ----CceeeEeeeHHHHHHcC-CCCh-hhhccccHHHHHHHHHH-cCCeEEEccceEEEec
Confidence 00124578999998653 2322 22237777776654432 4679999999999996
No 5
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=91.18 E-value=5.4 Score=38.13 Aligned_cols=139 Identities=14% Similarity=0.066 Sum_probs=74.9
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHHhCCccccCCcCCCCC-ceeeeeeee-ccC---cccceeeecccCCcccCCC
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNST-EIHHKFTIR-ART---KKFHRRVYDLRGSVKCTNI 258 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~-~i~h~iT~R-~~~---~~vHr~~~~~~g~~~C~~~ 258 (405)
+..|||++.|.|..++..-++++++.+....-.+.-|.+..-.+ ...++-... ... ..++...........+...
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 67899999999999999999999999998887777787653221 112221110 000 0011000000000000111
Q ss_pred CCCCCccceEEeeccccChhHHHHHhhhhccCCccccc-hhhhhh-hhhcCCCCCeEEEEeeeeEEecCC
Q 015555 259 SEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWG-MDMKLG-YCAQGDRTKNVGIIDSEYVVHQGI 326 (405)
Q Consensus 259 s~~ppcT~FVEiMAPVFSR~Awrcvw~miqNDlvhGWG-LDf~w~-~Ca~g~~~~kiGVVDa~~VvH~g~ 326 (405)
...+..+.++-..+=+|+|++|..+= .+.. ....|| =|.-+. ++.+ .+.+|-++-...|.|...
T Consensus 162 ~~~~~~~~~~~g~~~~irr~~~~~vG-gfDe-~~~~~~~ED~Dl~~R~~~--~G~~i~~~p~a~v~H~~~ 227 (299)
T cd02510 162 PTAPIRSPTMAGGLFAIDREWFLELG-GYDE-GMDIWGGENLELSFKVWQ--CGGSIEIVPCSRVGHIFR 227 (299)
T ss_pred CCCCccCccccceeeEEEHHHHHHhC-CCCC-cccccCchhHHHHHHHHH--cCCeEEEeeccEEEEecc
Confidence 11222233333323358899998773 3333 345565 343332 2222 245899999999999854
No 6
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=85.84 E-value=2 Score=38.53 Aligned_cols=126 Identities=17% Similarity=0.131 Sum_probs=61.8
Q ss_pred CccEEEEecCccccCCCCHHHHH---HHHH-HhCCccccCCcCCCCCceeeeeeeeccCcccceeeecccCCcccCCCCC
Q 015555 185 NYDYIFLWDEDLGVENFDPRRYL---EIVK-SEGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISE 260 (405)
Q Consensus 185 ~YDYIflwDDDL~vd~f~i~ryf---~Ivr-~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~g~~~C~~~s~ 260 (405)
.||||++.|+|..++...+.+++ +... ...+-+..|.............. +.....+. .. .+.. .
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~------~~~~--~ 143 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGV-RKSGYKLR--IQ------KEGE--E 143 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccce-eccCccce--ec------cccc--C
Confidence 68999999999999988888885 2222 22444555544322211111111 00010000 00 0000 0
Q ss_pred CCCccceEEeeccccChhHHHHHhhhhccCCccccchhhhhhhhhcCCCCCeEEEEeeeeEEec
Q 015555 261 GPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQ 324 (405)
Q Consensus 261 ~ppcT~FVEiMAPVFSR~Awrcvw~miqNDlvhGWGLDf~w~~Ca~g~~~~kiGVVDa~~VvH~ 324 (405)
..+-..++=.-+-+|+|++++.+=. +..+. ...|-|+.|...+. ..+.++..+....|.|.
T Consensus 144 ~~~~~~~~~~~~~~~rr~~~~~~gg-fd~~~-~~~~eD~d~~~r~~-~~G~~~~~~~~~~v~h~ 204 (237)
T cd02526 144 GLKEVDFLITSGSLISLEALEKVGG-FDEDL-FIDYVDTEWCLRAR-SKGYKIYVVPDAVLKHE 204 (237)
T ss_pred CceEeeeeeccceEEcHHHHHHhCC-CCHHH-cCccchHHHHHHHH-HcCCcEEEEcCeEEEec
Confidence 0000011111112589999998742 33222 23355665554333 23568998888888887
No 7
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=83.57 E-value=1.4 Score=39.18 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=54.1
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHHhCCccccCCcCCCCCceeeeeeeeccCcccceeeecccCCcccCCCCCCCC
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGPP 263 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~g~~~C~~~s~~pp 263 (405)
+.+|||++.|.|..++...+.++++.+...+..+.++. |
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~---------------------------------~-------- 123 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL---------------------------------C-------- 123 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee---------------------------------c--------
Confidence 57999999999998887777777665422222111111 0
Q ss_pred ccceEEeeccccChhHHHHHhhhhccCCccccchhhhhhhhhcCCCCCeEEEEeeeeEEec
Q 015555 264 CTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQ 324 (405)
Q Consensus 264 cT~FVEiMAPVFSR~Awrcvw~miqNDlvhGWGLDf~w~~Ca~g~~~~kiGVVDa~~VvH~ 324 (405)
++ ..+=+|++++++.+=.+ . ....-.+=|+.+..-+.. .+.+|.+++.. ++|.
T Consensus 124 ~~----g~~~~~r~~~~~~~ggf-~-~~~~~~~eD~~l~~rl~~-~G~~i~~~~~~-~~~~ 176 (196)
T cd02520 124 AF----GKSMALRREVLDAIGGF-E-AFADYLAEDYFLGKLIWR-LGYRVVLSPYV-VMQP 176 (196)
T ss_pred cc----CceeeeEHHHHHhccCh-H-HHhHHHHHHHHHHHHHHH-cCCeEEEcchh-eecc
Confidence 00 12347889998866322 1 111234568777765543 46789888774 5555
No 8
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=81.59 E-value=6.6 Score=35.75 Aligned_cols=176 Identities=19% Similarity=0.276 Sum_probs=92.8
Q ss_pred cccCCCCCCcCcccCCCCCccEEEEeccCcc--cccHHHHHhhcCCCCcEEEEEEeCCCCCccCCcCCCCceeEEEeecc
Q 015555 91 LRPLWSTSSSRKKFGVYSNRNLLAIPAGIKQ--KDNVDAIVRKFLPENFTVILFHYDGDVNAWRGLDWSNKAIHIAAQNQ 168 (405)
Q Consensus 91 lr~Lwg~p~~~~~~~~~~~k~Lva~~VG~kq--k~~Vd~~v~kf~~~nFdv~LFhYDg~vd~W~d~~ws~~aiHv~a~kq 168 (405)
+|.-||++..-. ..+.-+.+=+|... ...++..|++-....=||+++.+ +|.+..+.. +.+ -.
T Consensus 6 IR~TW~~~~~~~-----~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~---~D~y~nlt~--K~~-----~~ 70 (195)
T PF01762_consen 6 IRETWGNQRNFK-----GVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDF---VDSYRNLTL--KTL-----AG 70 (195)
T ss_pred HHHHHhcccccC-----CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeec---ccccchhhH--HHH-----HH
Confidence 466788666422 24456666778776 44567767663333447877665 344443310 111 11
Q ss_pred chhhhhccccCccccCCccEEEEecCccccCCCCHHHHHHHHHHhCCccccCCcCCCCCceeeeeeeeccCcc--cceee
Q 015555 169 TKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKK--FHRRV 246 (405)
Q Consensus 169 tKWw~akRfLHPdiva~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~--vHr~~ 246 (405)
-+|-. . | ...++||+..|||+-| ++.++++..++.-.+.+.+.+... .....-..|++.+. +....
T Consensus 71 ~~w~~--~--~---c~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g~--~~~~~~~~r~~~~kw~v~~~~ 138 (195)
T PF01762_consen 71 LKWAS--K--H---CPNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYGG--CIKNGPPIRDPSSKWYVSEEE 138 (195)
T ss_pred HHHHH--h--h---CCchhheeecCcEEEE---ehHHhhhhhhhcccCccccccccc--cccCCccccccccCceeeeee
Confidence 22221 1 1 1258999999999988 556666666665233333322221 11122233333322 11111
Q ss_pred ecccCCcccCCCCCCCCccceEEeeccccChhHHHHHhhhhccCCccccchh-hhhhhhhcC
Q 015555 247 YDLRGSVKCTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMD-MKLGYCAQG 307 (405)
Q Consensus 247 ~~~~g~~~C~~~s~~ppcT~FVEiMAPVFSR~Awrcvw~miqNDlvhGWGLD-f~w~~Ca~g 307 (405)
|. ....| .|....+=++|+++.+.+....+. . .-+-+| -.+|.|++.
T Consensus 139 y~---------~~~yP---~y~~G~~yvls~~~v~~i~~~~~~-~-~~~~~eDv~iGi~~~~ 186 (195)
T PF01762_consen 139 YP---------DDYYP---PYCSGGGYVLSSDVVKRIYKASSH-T-PFFPLEDVFIGILAEK 186 (195)
T ss_pred cc---------cccCC---CcCCCCeEEecHHHHHHHHHHhhc-C-CCCCchHHHHHHHHHH
Confidence 21 11233 355678889999999988876553 3 334454 444888874
No 9
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=81.36 E-value=2.4 Score=37.85 Aligned_cols=192 Identities=16% Similarity=0.133 Sum_probs=89.0
Q ss_pred cEEEEeccCcccccHHHHHhhcCC---CCcEEEEEEeCCCCCccCC-c-----CCCCceeEEEee---cc--chhhhhcc
Q 015555 111 NLLAIPAGIKQKDNVDAIVRKFLP---ENFTVILFHYDGDVNAWRG-L-----DWSNKAIHIAAQ---NQ--TKWWFAKR 176 (405)
Q Consensus 111 ~Lva~~VG~kqk~~Vd~~v~kf~~---~nFdv~LFhYDg~vd~W~d-~-----~ws~~aiHv~a~---kq--tKWw~akR 176 (405)
..|++++-.. ...+...|+-... .++.|++..-+ ..++=.+ + .+....+++... .+ +|-..+..
T Consensus 3 v~Vvip~~~~-~~~l~~~l~sl~~~~~~~~~v~vvd~~-~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~ 80 (228)
T PF13641_consen 3 VSVVIPAYNE-DDVLRRCLESLLAQDYPRLEVVVVDDG-SDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNE 80 (228)
T ss_dssp EEEE--BSS--HHHHHHHHHHHTTSHHHTEEEEEEEE--SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHH
T ss_pred EEEEEEecCC-HHHHHHHHHHHHcCCCCCeEEEEEECC-CChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHH
Confidence 4555665443 2345555554432 46888887733 3232111 1 233223444322 22 34444444
Q ss_pred ccCccccCCccEEEEecCccccCCCCHHHHHHHHHHhCCccccCCcCCCCCceeeeeeeeccCc--ccceeeecccCCcc
Q 015555 177 FLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTK--KFHRRVYDLRGSVK 254 (405)
Q Consensus 177 fLHPdiva~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~--~vHr~~~~~~g~~~ 254 (405)
.+. ...+|||++.|+|..++...+.++++.+...+..+.++........ ..++.-.... .-|..++ .
T Consensus 81 ~~~---~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~ 149 (228)
T PF13641_consen 81 ALA---AARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDR--NWLTRLQDLFFARWHLRFR------S 149 (228)
T ss_dssp HHH---H---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCC--CEEEE-TT--S-EETTTS-------T
T ss_pred HHH---hcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCC--CHHHHHHHHHHhhhhhhhh------h
Confidence 442 1459999999999999999999999999778888888665332211 1111111100 0000000 0
Q ss_pred cCCCCCCCCccceEEeeccccChhHHHHHhhhhccCCccccchhhhhhhhhcCCCCCeEEEEeeeeEEec
Q 015555 255 CTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQ 324 (405)
Q Consensus 255 C~~~s~~ppcT~FVEiMAPVFSR~Awrcvw~miqNDlvhGWGLDf~w~~Ca~g~~~~kiGVVDa~~VvH~ 324 (405)
.........++| -+=+|+|+++..+-. +.. ..-|=|+.+...+.. .+.+|.......|.|.
T Consensus 150 ~~~~~~~~~~~G----~~~~~rr~~~~~~g~-fd~---~~~~eD~~l~~r~~~-~G~~~~~~~~~~v~~~ 210 (228)
T PF13641_consen 150 GRRALGVAFLSG----SGMLFRRSALEEVGG-FDP---FILGEDFDLCLRLRA-AGWRIVYAPDALVYHE 210 (228)
T ss_dssp T-B----S-B------TEEEEEHHHHHHH-S---S---SSSSHHHHHHHHHHH-TT--EEEEEEEEEEE-
T ss_pred hhcccceeeccC----cEEEEEHHHHHHhCC-CCC---CCcccHHHHHHHHHH-CCCcEEEECCcEEEEe
Confidence 000000111111 123589999998752 222 444577777643332 4678999988888888
No 10
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=78.80 E-value=1.3 Score=38.62 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=31.7
Q ss_pred cCCccEEEEecCccccCCCCHHHHHHHHHHh-CCccccCCc
Q 015555 183 VSNYDYIFLWDEDLGVENFDPRRYLEIVKSE-GFEISQPAL 222 (405)
Q Consensus 183 va~YDYIflwDDDL~vd~f~i~ryf~Ivr~~-gLeISQPAL 222 (405)
.+.+|||++.|+|..++.-.++++++.+.++ +..+..+..
T Consensus 78 ~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~ 118 (201)
T cd04195 78 HCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGV 118 (201)
T ss_pred hcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccE
Confidence 3589999999999999988899998887654 566665543
No 11
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=78.65 E-value=1.3 Score=39.17 Aligned_cols=36 Identities=22% Similarity=0.150 Sum_probs=26.7
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHHhCCcccc
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQ 219 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQ 219 (405)
+..|||++.|+|..++...+.++++.+...+..+..
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 112 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVI 112 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 456999999999888777777888876555555443
No 12
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=71.86 E-value=5.9 Score=33.75 Aligned_cols=37 Identities=8% Similarity=-0.065 Sum_probs=27.5
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHH-HHhCCccccC
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIV-KSEGFEISQP 220 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Iv-r~~gLeISQP 220 (405)
+.+|||++.|+|..++...+.++++.. ...+..+..+
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g 111 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYG 111 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEe
Confidence 468999999999999998888888444 3334554443
No 13
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=69.25 E-value=6.9 Score=36.17 Aligned_cols=109 Identities=16% Similarity=0.218 Sum_probs=59.7
Q ss_pred CCccEEEEeccCcccccHHHHHh---h-cC-CCCcEEEEEEeCCCCCccCC-c-CC----CCceeEEEee--ccchhhhh
Q 015555 108 SNRNLLAIPAGIKQKDNVDAIVR---K-FL-PENFTVILFHYDGDVNAWRG-L-DW----SNKAIHIAAQ--NQTKWWFA 174 (405)
Q Consensus 108 ~~k~Lva~~VG~kqk~~Vd~~v~---k-f~-~~nFdv~LFhYDg~vd~W~d-~-~w----s~~aiHv~a~--kqtKWw~a 174 (405)
.++.-|++|+= +....+...+. + .. ..+|.|++.. ||..|+=.+ + ++ ....+++... +..+-.-.
T Consensus 8 ~~~vsVvIp~y-ne~~~l~~~l~~l~~~~~~~~~~eiivvD-dgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~ 85 (243)
T PLN02726 8 AMKYSIIVPTY-NERLNIALIVYLIFKALQDVKDFEIIVVD-DGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAY 85 (243)
T ss_pred CceEEEEEccC-CchhhHHHHHHHHHHHhccCCCeEEEEEe-CCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHH
Confidence 45678888874 44444444332 2 11 1266666664 666553111 1 01 1113333322 23332111
Q ss_pred ccccCccccCCccEEEEecCccccCCCCHHHHHHHHHHhCCccccCC
Q 015555 175 KRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA 221 (405)
Q Consensus 175 kRfLHPdiva~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPA 221 (405)
+.-+ -.+..|||++.|.|...+...+.++++.+.+.+.++....
T Consensus 86 n~g~---~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 129 (243)
T PLN02726 86 IHGL---KHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGT 129 (243)
T ss_pred HHHH---HHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEc
Confidence 1111 0357899999999999988889999998877777665443
No 14
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=68.27 E-value=24 Score=34.34 Aligned_cols=138 Identities=14% Similarity=-0.002 Sum_probs=82.3
Q ss_pred ccEEEEecCccccCCCCHHHHHHHHHHhCCccccCCcCCCCCceeeeeeeeccCcccceeeecccCCcccCCC----CCC
Q 015555 186 YDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNI----SEG 261 (405)
Q Consensus 186 YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~g~~~C~~~----s~~ 261 (405)
|+|++++++|..++...++++++.+++.+-...-|++-.+...-.+.-... ......... .....+... +..
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~ 160 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRG-GESDGLTGG---WRASPLLEIAPDLSSY 160 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheec-ccccccccc---ceecccccccccccch
Confidence 459999999999999999999999999988877777655332212221111 110000000 000111111 111
Q ss_pred CCccceEEeeccccChhHHHHHhhhhccCCccccchhhhhhhhhcCCCCCeEEEEeeeeEEecCCCCCC
Q 015555 262 PPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQGIQTLG 330 (405)
Q Consensus 262 ppcT~FVEiMAPVFSR~Awrcvw~miqNDlvhGWGLDf~w~~Ca~g~~~~kiGVVDa~~VvH~g~ptlG 330 (405)
+.+..++..-+-+++|++++.+=. +.. ..=.+.-|.-|.+-+.- .+.++..+=.-.|.|..--+.+
T Consensus 161 ~~~~~~~~G~~~li~~~~~~~vG~-~de-~~F~y~eD~D~~~R~~~-~G~~i~~~p~a~i~H~~g~s~~ 226 (305)
T COG1216 161 LEVVASLSGACLLIRREAFEKVGG-FDE-RFFIYYEDVDLCLRARK-AGYKIYYVPDAIIYHKIGSSKG 226 (305)
T ss_pred hhhhhhcceeeeEEcHHHHHHhCC-CCc-ccceeehHHHHHHHHHH-cCCeEEEeeccEEEEeccCCCC
Confidence 223335666668899999998864 332 34556667666654442 3558999999999998434433
No 15
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=67.65 E-value=7.2 Score=35.32 Aligned_cols=126 Identities=15% Similarity=0.094 Sum_probs=65.9
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHHhCCccccCCcCC-CCCceeeeeee-eccCcccceeeecccCCcccCCCCCC
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDP-NSTEIHHKFTI-RARTKKFHRRVYDLRGSVKCTNISEG 261 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~-~s~~i~h~iT~-R~~~~~vHr~~~~~~g~~~C~~~s~~ 261 (405)
+.||||++.|.|..++...++++..++...+..+.|+-+.. +... ..++. +.-....|-.+ +..+. ..
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~-------~~ 155 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANY--SLLTRVQAMSLDYHFTI-EQVAR-------SS 155 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCC--chhhHhhhhhHHhhhhH-hHhhH-------hh
Confidence 58999999999999998888887777765555555554321 1000 00100 00000000000 00000 00
Q ss_pred CCccceEEeeccccChhHHHHHhhhhccCCccccchhhhhhhhhcCCCCCeEEEEeeeeEEec
Q 015555 262 PPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQ 324 (405)
Q Consensus 262 ppcT~FVEiMAPVFSR~Awrcvw~miqNDlvhGWGLDf~w~~Ca~g~~~~kiGVVDa~~VvH~ 324 (405)
..+...+=.++-+|+|++|..+-. +.. ...+=|+.+...+. ..+.++..++...|.|.
T Consensus 156 ~~~~~~~~g~~~~~rr~~~~~vgg-~~~---~~~~ED~~l~~rl~-~~G~~~~~~~~~~v~~~ 213 (232)
T cd06437 156 TGLFFNFNGTAGVWRKECIEDAGG-WNH---DTLTEDLDLSYRAQ-LKGWKFVYLDDVVVPAE 213 (232)
T ss_pred cCCeEEeccchhhhhHHHHHHhCC-CCC---CcchhhHHHHHHHH-HCCCeEEEeccceeeee
Confidence 011111112223799999987743 222 22457777665443 24678999988887777
No 16
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=65.95 E-value=4.9 Score=32.71 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=30.0
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHHhCCccccCC
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA 221 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPA 221 (405)
+..|||++.|+|..++.-.+.++++.+++++-.+.-+.
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 56679999999999999999999999999777554444
No 17
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=65.78 E-value=3.1 Score=37.16 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=27.0
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHHhCCcccc
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQ 219 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQ 219 (405)
+..|||++.|.|...+...+.++++.+...+..+..
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~ 116 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDIAI 116 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence 456999999999988888788887775555554444
No 18
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=65.18 E-value=3.8 Score=36.71 Aligned_cols=41 Identities=12% Similarity=-0.049 Sum_probs=35.8
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHHhCCccccCCcCC
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDP 224 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~ 224 (405)
+.+|||++.|+|..++...+.++++.+...+..+.++....
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 48999999999999999999999999987788888876544
No 19
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=64.44 E-value=8.7 Score=37.32 Aligned_cols=95 Identities=12% Similarity=0.217 Sum_probs=54.2
Q ss_pred cCcccccHHHHHhhcCC-CCcEEEEEEeCCCCCccCCcCCCCceeEEEeeccchhhhhccccCccccCCccEEEEecCcc
Q 015555 118 GIKQKDNVDAIVRKFLP-ENFTVILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDL 196 (405)
Q Consensus 118 G~kqk~~Vd~~v~kf~~-~nFdv~LFhYDg~vd~W~d~~ws~~aiHv~a~kqtKWw~akRfLHPdiva~YDYIflwDDDL 196 (405)
..+-......+|+.... ..-.=++..+.+...--....|....+-|....+++=-.-.||+..+.+. =|.||..|||+
T Consensus 8 ~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~~i~-T~AVl~~DDDv 86 (247)
T PF09258_consen 8 SYKRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDPEIE-TDAVLSLDDDV 86 (247)
T ss_dssp -SS-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS--TT---SSEEEEEETTE
T ss_pred cccchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCcCccccC-cceEEEecCCc
Confidence 45545556666766543 34444555555422221124454455555556666666778888655444 49999999999
Q ss_pred ccCCCCHHHHHHHHHHh
Q 015555 197 GVENFDPRRYLEIVKSE 213 (405)
Q Consensus 197 ~vd~f~i~ryf~Ivr~~ 213 (405)
.++..+++.-|+.-+++
T Consensus 87 ~~~~~~l~faF~~W~~~ 103 (247)
T PF09258_consen 87 MLSCDELEFAFQVWREF 103 (247)
T ss_dssp EE-HHHHHHHHHHHCCS
T ss_pred ccCHHHHHHHHHHHHhC
Confidence 99999999999888744
No 20
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=63.67 E-value=6.2 Score=35.10 Aligned_cols=123 Identities=11% Similarity=-0.053 Sum_probs=68.9
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHH-hCCccccCCcCC--CCCceeeeeeeecc---CcccceeeecccCCcccCC
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKS-EGFEISQPALDP--NSTEIHHKFTIRAR---TKKFHRRVYDLRGSVKCTN 257 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~-~gLeISQPALd~--~s~~i~h~iT~R~~---~~~vHr~~~~~~g~~~C~~ 257 (405)
+.+|||.+.|+|..++...+.++++.+.+ .++.+.++.... .... ..+..... ..-.+. +... ..
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~--~~---- 153 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPF--DWLADGAPNEQELFYGV-IQPG--RD---- 153 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcc--hhHHHHHHHHHHHHHHH-HHHH--Hh----
Confidence 47999999999999999999999999987 677777764211 1110 00010000 000000 0000 00
Q ss_pred CCCCCCccceEEeeccccChhHHHHHhhhhccCCccccchhhhhhhhhcCCCCCeEEEEeeeeEEec
Q 015555 258 ISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQ 324 (405)
Q Consensus 258 ~s~~ppcT~FVEiMAPVFSR~Awrcvw~miqNDlvhGWGLDf~w~~Ca~g~~~~kiGVVDa~~VvH~ 324 (405)
..++ .++=.++=+|+|++++.+-.+ . ....+-|+.+..-+.. .+.+|..++...+.|.
T Consensus 154 ---~~~~-~~~~g~~~~~r~~~~~~ig~~-~---~~~~~eD~~l~~r~~~-~g~~i~~~~~~~~~~~ 211 (234)
T cd06421 154 ---RWGA-AFCCGSGAVVRREALDEIGGF-P---TDSVTEDLATSLRLHA-KGWRSVYVPEPLAAGL 211 (234)
T ss_pred ---hcCC-ceecCceeeEeHHHHHHhCCC-C---ccceeccHHHHHHHHH-cCceEEEecCcccccc
Confidence 0111 122233457899999987532 2 2345788877743321 3568888887777666
No 21
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=61.35 E-value=6.9 Score=34.94 Aligned_cols=126 Identities=12% Similarity=-0.037 Sum_probs=66.9
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHHhCCccccCCcCCCCCceeeeeeeeccCcccceeeecccCCcccCCC-C-CC
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNI-S-EG 261 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~g~~~C~~~-s-~~ 261 (405)
+.+|||.+.|+|..++...++++++..++.+..+.++............ +........ +.......+... . ..
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~ 154 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQK-AIAVAQSSP----LGSGGSAYRGGAVKIGY 154 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHH-HHHHHhhch----hccCCcccccccccccc
Confidence 4799999999999999888999998888877777665432211000000 000000000 000000000000 0 00
Q ss_pred CCccceEEeeccccChhHHHHHhhhhccCCccccchhhhhh-hhhcCCCCCeEEEEeeeeEEec
Q 015555 262 PPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLG-YCAQGDRTKNVGIIDSEYVVHQ 324 (405)
Q Consensus 262 ppcT~FVEiMAPVFSR~Awrcvw~miqNDlvhGWGLDf~w~-~Ca~g~~~~kiGVVDa~~VvH~ 324 (405)
..+.++ | +|+|++|+.+= .+.. ....|-|+.+. +|.+ .+.++..+....+.|.
T Consensus 155 ~~~~~~---~--~~~~~~~~~~g-~~~~--~~~~~eD~~l~~r~~~--~G~~~~~~~~~~~~~~ 208 (249)
T cd02525 155 VDTVHH---G--AYRREVFEKVG-GFDE--SLVRNEDAELNYRLRK--AGYKIWLSPDIRVYYY 208 (249)
T ss_pred cccccc---c--eEEHHHHHHhC-CCCc--ccCccchhHHHHHHHH--cCcEEEEcCCeEEEEc
Confidence 001111 1 47899998763 2322 23346776665 3444 3568999999888887
No 22
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=57.32 E-value=6.4 Score=35.44 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=31.3
Q ss_pred CccEEEEecCccccCCCCHHHHHHHHHHhCCccccCC
Q 015555 185 NYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA 221 (405)
Q Consensus 185 ~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPA 221 (405)
.||||++.|+|..++.-.+.++++.++..+..+.++.
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 120 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAP 120 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecC
Confidence 4999999999999999999999988876677776654
No 23
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=51.74 E-value=18 Score=40.44 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=67.8
Q ss_pred ccCcccccHHHHHhhcCCCCcEEEEEEeCCC--------------------------CCccCCcCCCCceeEEEeeccch
Q 015555 117 AGIKQKDNVDAIVRKFLPENFTVILFHYDGD--------------------------VNAWRGLDWSNKAIHIAAQNQTK 170 (405)
Q Consensus 117 VG~kqk~~Vd~~v~kf~~~nFdv~LFhYDg~--------------------------vd~W~d~~ws~~aiHv~a~kqtK 170 (405)
+|...|..-.++=...+.++|+||++-|.-. -+.-+|+.|-+-.+-|....-.+
T Consensus 631 ~gGsGkEF~~aLGGN~pREQFTvVmLTYERe~VLm~sLeRL~gLPYLnKvvVVWNspk~P~ddl~WPdigvPv~viR~~~ 710 (907)
T KOG2264|consen 631 AGGSGKEFSKALGGNRPREQFTVVMLTYEREAVLMGSLERLHGLPYLNKVVVVWNSPKDPPDDLTWPDIGVPVEVIRVAE 710 (907)
T ss_pred CCCchHHHHHHhcCCCccceEEEEEEEehHHHHHHHHHHHhhCCcccceEEEEeCCCCCChhcccCcCCCCceEEEEccc
Confidence 3455566544555566779999999999732 12345688876665555555556
Q ss_pred hhhhccccCccccCCccEEEEecCccccCCCCHHHHHHHHHHh
Q 015555 171 WWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSE 213 (405)
Q Consensus 171 Ww~akRfLHPdiva~YDYIflwDDDL~vd~f~i~ryf~Ivr~~ 213 (405)
=-.-.|||..|.++- +.|.-.|||..+-|..|-==|.+-|++
T Consensus 711 NsLNNRFlPwd~IET-EAvLS~DDDahLrhdEI~fgFRVWRE~ 752 (907)
T KOG2264|consen 711 NSLNNRFLPWDRIET-EAVLSLDDDAHLRHDEIIFGFRVWREN 752 (907)
T ss_pred ccccccccCchhhhh-eeeeecccchhhhhhheeeeeehhhhc
Confidence 567899999998876 999999999999888775445554544
No 24
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=48.00 E-value=20 Score=35.91 Aligned_cols=188 Identities=16% Similarity=0.203 Sum_probs=94.1
Q ss_pred CCccEEEEeccCcccccHHHHHhhc----C-------CCCcEEEEEEeCCCCCc-cCCc-CCCC------ceeEEE--ee
Q 015555 108 SNRNLLAIPAGIKQKDNVDAIVRKF----L-------PENFTVILFHYDGDVNA-WRGL-DWSN------KAIHIA--AQ 166 (405)
Q Consensus 108 ~~k~Lva~~VG~kqk~~Vd~~v~kf----~-------~~nFdv~LFhYDg~vd~-W~d~-~ws~------~aiHv~--a~ 166 (405)
.+.--|++||=. ....+..+++.- . ..++.|++. =||+.|+ ...+ ++.+ ..+++. ..
T Consensus 69 ~~~isVVIP~yN-e~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVV-DDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~ 146 (333)
T PTZ00260 69 DVDLSIVIPAYN-EEDRLPKMLKETIKYLESRSRKDPKFKYEIIIV-NDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR 146 (333)
T ss_pred CeEEEEEEeeCC-CHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEE-eCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence 445667777644 444455554422 1 125665554 5777664 2211 1111 124443 23
Q ss_pred ccchhhhhccccCccccCCccEEEEecCccccCCCCHHHHHHHHHH---hCCccccCCcCCC-CC--ceeeeeeeeccCc
Q 015555 167 NQTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKS---EGFEISQPALDPN-ST--EIHHKFTIRARTK 240 (405)
Q Consensus 167 kqtKWw~akRfLHPdiva~YDYIflwDDDL~vd~f~i~ryf~Ivr~---~gLeISQPALd~~-s~--~i~h~iT~R~~~~ 240 (405)
++.|-.-.+.=+. .+..|||++.|.|...+..++.++++.++. .+.++..-+.... .+ ....+...+--..
T Consensus 147 N~G~~~A~~~Gi~---~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~ 223 (333)
T PTZ00260 147 NKGKGGAVRIGML---ASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMY 223 (333)
T ss_pred CCChHHHHHHHHH---HccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHH
Confidence 5566544333221 257899999999999999999999998875 4554444332210 00 0011111110011
Q ss_pred ccceeeecccCCcccCCCCCCCCccceEEeecc--ccChhHHHHHhhhhccCCccccchhhhhhhhhcCCCCCeEEEEe
Q 015555 241 KFHRRVYDLRGSVKCTNISEGPPCTGFVEGMAP--VFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIID 317 (405)
Q Consensus 241 ~vHr~~~~~~g~~~C~~~s~~ppcT~FVEiMAP--VFSR~Awrcvw~miqNDlvhGWGLDf~w~~Ca~g~~~~kiGVVD 317 (405)
.+|.- ... -|. +++-+.++. +|+|++++.+.+.+ ...+|+.|.-+-..+.- .+.+|.-|-
T Consensus 224 ~~~~l-~~~----~~~--------~~i~D~~~Gfk~~~r~~~~~i~~~~---~~~~~~fd~Ell~~a~~-~g~~I~EvP 285 (333)
T PTZ00260 224 GFHFI-VNT----ICG--------TNLKDTQCGFKLFTRETARIIFPSL---HLERWAFDIEIVMIAQK-LNLPIAEVP 285 (333)
T ss_pred HHHHH-HHH----HcC--------CCcccCCCCeEEEeHHHHHHHhhhc---cccCccchHHHHHHHHH-cCCCEEEEc
Confidence 11110 000 010 123333444 68999999775432 34688888777766652 334454443
No 25
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=41.41 E-value=17 Score=29.27 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=26.2
Q ss_pred CccEEEEecCccccCCCCHHHH-HHHHHHhCCccccCCc
Q 015555 185 NYDYIFLWDEDLGVENFDPRRY-LEIVKSEGFEISQPAL 222 (405)
Q Consensus 185 ~YDYIflwDDDL~vd~f~i~ry-f~Ivr~~gLeISQPAL 222 (405)
.+|||++.|+|..++...+.++ ..+.+..+..+..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 116 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRV 116 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeE
Confidence 7999999999999887777777 3333444444444443
No 26
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=41.21 E-value=24 Score=27.67 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=19.2
Q ss_pred CccEEEEecCccccCCCCHHHH
Q 015555 185 NYDYIFLWDEDLGVENFDPRRY 206 (405)
Q Consensus 185 ~YDYIflwDDDL~vd~f~i~ry 206 (405)
.+||+++.|+|..++...+.++
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred cCCEEEEECCCCccCccHHHHH
Confidence 6999999999999888777776
No 27
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=40.05 E-value=24 Score=29.77 Aligned_cols=43 Identities=26% Similarity=0.468 Sum_probs=34.8
Q ss_pred ccccCccccCCccEEEEecCccccCCCCHHHHHHHHHHhCCccccCC
Q 015555 175 KRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA 221 (405)
Q Consensus 175 kRfLHPdiva~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPA 221 (405)
.-|+||.+.++--.|||+-|++||...- ++-.++.|+.||.-+
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~~GvS~~e----i~~~~~~~v~~Sd~g 76 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDPLGVSRQE----IEETRKVGVPISDEG 76 (95)
T ss_pred hccCCHhHcCCCCeEEeecCCCCCCHHH----HHHhhcCCeEEECCC
Confidence 4589999999999999999999997644 455667778887655
No 28
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=39.91 E-value=37 Score=32.76 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=52.1
Q ss_pred EEEeccCcccc-----cHHHHHh---hc-CCCCcEEEEEEeCCCCCccCC-c-CC--CCceeEE-Eeeccchhhhhcccc
Q 015555 113 LAIPAGIKQKD-----NVDAIVR---KF-LPENFTVILFHYDGDVNAWRG-L-DW--SNKAIHI-AAQNQTKWWFAKRFL 178 (405)
Q Consensus 113 va~~VG~kqk~-----~Vd~~v~---kf-~~~nFdv~LFhYDg~vd~W~d-~-~w--s~~aiHv-~a~kqtKWw~akRfL 178 (405)
|++||..+... .+...+. ++ +..++.|++..++.. +++.+ + +. ....+++ ....+...|..-+-.
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~-~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ar 80 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSS-DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKAR 80 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCc-hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHH
Confidence 68899888743 2322233 32 246888888887765 33311 1 01 1123322 112122222221111
Q ss_pred C-ccccCCccEEEEecCccccCCCCHHHHHH
Q 015555 179 H-PDVVSNYDYIFLWDEDLGVENFDPRRYLE 208 (405)
Q Consensus 179 H-Pdiva~YDYIflwDDDL~vd~f~i~ryf~ 208 (405)
+ -=-.+.-|||+++|-|+.++...+++++.
T Consensus 81 N~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 81 NIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred HHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 1 11136889999999999999888888888
No 29
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=39.68 E-value=24 Score=30.66 Aligned_cols=38 Identities=8% Similarity=0.130 Sum_probs=30.2
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHH-HHhCCccccCC
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIV-KSEGFEISQPA 221 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Iv-r~~gLeISQPA 221 (405)
+.+|||++.|+|..++...++++++.+ +..+..+..+.
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~ 120 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSD 120 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEcc
Confidence 568999999999999888899999888 55556665443
No 30
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=38.88 E-value=22 Score=32.37 Aligned_cols=122 Identities=21% Similarity=0.170 Sum_probs=71.3
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHH--hCCccccCCcCCCCCceeeeeeeeccCcccceeeecccCCcccCCCCCC
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKS--EGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEG 261 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~--~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~g~~~C~~~s~~ 261 (405)
+.||||++.|+|+.++.-.+.++..-... .|+-=+-|-..+..+.... +-.-...+|-.++. .
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~---l~~~~~~~~~~~~~------------a 94 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSR---LEAAFFNFLPGVLQ------------A 94 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHH---HHHHHHhHHHHHHH------------H
Confidence 89999999999999998888887765554 3443223333232222111 00000012211111 0
Q ss_pred CCccceEEeeccccChhHHHHHhhhhccCCccccchhhhhhhhhcCCCCCeEEEEeeeeEEec
Q 015555 262 PPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQ 324 (405)
Q Consensus 262 ppcT~FVEiMAPVFSR~Awrcvw~miqNDlvhGWGLDf~w~~Ca~g~~~~kiGVVDa~~VvH~ 324 (405)
..-++|+=.|+=.|+|++++.+= -+. .+.+.-.=||.++..+.. .+.+|...... |+|+
T Consensus 95 ~~~~~~~~G~~m~~rr~~L~~~G-G~~-~l~~~ladD~~l~~~~~~-~G~~v~~~~~~-v~~~ 153 (175)
T PF13506_consen 95 LGGAPFAWGGSMAFRREALEEIG-GFE-ALADYLADDYALGRRLRA-RGYRVVLSPYP-VVQT 153 (175)
T ss_pred hcCCCceecceeeeEHHHHHHcc-cHH-HHhhhhhHHHHHHHHHHH-CCCeEEEcchh-eeec
Confidence 12346777888889999998652 222 345566789999987763 56777776543 4454
No 31
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=38.81 E-value=25 Score=30.94 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=29.1
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHHhCCccccCC
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA 221 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPA 221 (405)
+.+|||++.|+|..++.-.++++++.+.+.+-.+.+.+
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 118 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGP 118 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeee
Confidence 56899999999999988888888886666554444433
No 32
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=35.79 E-value=30 Score=30.04 Aligned_cols=46 Identities=17% Similarity=0.108 Sum_probs=31.2
Q ss_pred ccChhHHHHHhhhhccCCccccchhhhhhhhhcCCCCCeEEEEeeeeEEec
Q 015555 274 VFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQ 324 (405)
Q Consensus 274 VFSR~Awrcvw~miqNDlvhGWGLDf~w~~Ca~g~~~~kiGVVDa~~VvH~ 324 (405)
+|++++++.+-.+.. ...|+-|+.+..++.. ..++.+++...+.|+
T Consensus 158 ~~r~~~~~~~~~~~~---~~~~~~D~~~~~~~~~--~~~~~~~~~~~~~~r 203 (214)
T cd04196 158 AFNRELLELALPFPD---ADVIMHDWWLALLASA--FGKVVFLDEPLILYR 203 (214)
T ss_pred eEEHHHHHhhccccc---cccccchHHHHHHHHH--cCceEEcchhHHHHh
Confidence 699999998764322 2267778666655542 457888888777666
No 33
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=35.21 E-value=23 Score=32.18 Aligned_cols=40 Identities=8% Similarity=-0.007 Sum_probs=31.8
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHHhCCccccCCcC
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALD 223 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd 223 (405)
+..|||++.|+|..++...+.++++.++..+..+.++...
T Consensus 108 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 108 ATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred cCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 3469999999999999888888888887666666666543
No 34
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=34.71 E-value=30 Score=30.56 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=32.1
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHHhCCccccCCcCC
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDP 224 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~ 224 (405)
+.+|||++.|+|..++...+++++......+..++.+....
T Consensus 71 a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 111 (221)
T cd02522 71 ARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRF 111 (221)
T ss_pred ccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeee
Confidence 45899999999999998888888777777766666655443
No 35
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=33.93 E-value=39 Score=31.02 Aligned_cols=38 Identities=8% Similarity=0.169 Sum_probs=29.7
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHHh--CCccccCC
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSE--GFEISQPA 221 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~~--gLeISQPA 221 (405)
+.+|||++.|.|..++.-.+.+.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 678999999999999998888888877643 44444543
No 36
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=31.37 E-value=46 Score=33.65 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=29.7
Q ss_pred ccEEEEecCccccCCCCHHHHHHHHHHhCCccc
Q 015555 186 YDYIFLWDEDLGVENFDPRRYLEIVKSEGFEIS 218 (405)
Q Consensus 186 YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeIS 218 (405)
+|||++.|.|..++...++++++.+++.+..+.
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 899999999999999999999999988776654
No 37
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=30.25 E-value=35 Score=29.09 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=20.7
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHH
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIV 210 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Iv 210 (405)
+.+|||+++|+|..++...+.++++.+
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 678999999999988765566655543
No 38
>PHA03165 hypothetical protein; Provisional
Probab=28.34 E-value=43 Score=26.06 Aligned_cols=32 Identities=25% Similarity=0.491 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhhcchhhhhhhhhhhccCCCccCCcccc
Q 015555 30 FMAIMCTVMLFVVYRTTYYQYKQTEMEAKFSPFDISKGSRF 70 (405)
Q Consensus 30 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (405)
...+++.+++|++|..+- ...+||++.-.++|
T Consensus 23 yilvvafvlaflvysdfl---------snlspfgeilsspc 54 (57)
T PHA03165 23 YILVVAFVLAFLVYSDFL---------SNLSPFGEILSSPC 54 (57)
T ss_pred ehhHHHHHHHHHHHHHHH---------hccCchhhhhcCcc
Confidence 356778889999999887 66788877655554
No 39
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=27.87 E-value=30 Score=27.86 Aligned_cols=25 Identities=32% Similarity=0.743 Sum_probs=18.9
Q ss_pred ccccCCccEEEEecCccccCCCCHHHHHHHHHHhC
Q 015555 180 PDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEG 214 (405)
Q Consensus 180 Pdiva~YDYIflwDDDL~vd~f~i~ryf~Ivr~~g 214 (405)
..+...|||||++|.+ .++-.++.|
T Consensus 13 ~~i~~~~~~iFt~D~~----------~~~~~~~~G 37 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS----------FVEEYRNLG 37 (79)
T ss_pred hhhCCCCCEEEEECHH----------HHHHHHHcC
Confidence 4778999999999974 455556666
No 40
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=27.56 E-value=96 Score=31.69 Aligned_cols=185 Identities=17% Similarity=0.178 Sum_probs=98.7
Q ss_pred CccccCCCccc----ccCCCCCCcCcccCCCCCccEEEEeccCcccc-cHHHHHhhcCCCCcEEEEEEeCCCCCccCCcC
Q 015555 81 GIVQARSDLEL----RPLWSTSSSRKKFGVYSNRNLLAIPAGIKQKD-NVDAIVRKFLPENFTVILFHYDGDVNAWRGLD 155 (405)
Q Consensus 81 giv~~~sd~~l----r~Lwg~p~~~~~~~~~~~k~Lva~~VG~kqk~-~Vd~~v~kf~~~nFdv~LFhYDg~vd~W~d~~ 155 (405)
+|-....++.. |+=||+++. . ...+.-+.+=+|..... .+++.|.+-....-||++-.|..+.. .+.
T Consensus 100 ~V~S~~~~farR~aiR~TW~~~~~-v----~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~df~Dty~---nlt 171 (349)
T KOG2287|consen 100 LVKSAPDNFARRNAIRKTWGNENN-V----RGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVDFEDTYF---NLT 171 (349)
T ss_pred EEecCCCCHHHHHHHHHHhcCccc-c----CCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEecccchh---chH
Confidence 44556666654 567998776 1 12222222233332221 46788887666778999888766522 211
Q ss_pred CCCceeEEEeeccchhhhhccccCccccCCccEEEEecCccccCCCCHHHHHHHHHHhCCccccCCcCCCCCceeee-ee
Q 015555 156 WSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHK-FT 234 (405)
Q Consensus 156 ws~~aiHv~a~kqtKWw~akRfLHPdiva~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~-iT 234 (405)
.|==...++.. .-...++||.=.|||+-| +++.+++..++.. .|+=+.=.|.+... -.
T Consensus 172 -------------lKtl~~l~w~~-~~cp~akfi~K~DDDvfv---~~~~L~~~L~~~~----~~~~~~~~G~v~~~~~p 230 (349)
T KOG2287|consen 172 -------------LKTLAILLWGV-SKCPDAKFILKIDDDVFV---NPDNLLEYLDKLN----DPSSDLYYGRVIQNAPP 230 (349)
T ss_pred -------------HHHHHHHHHHH-hcCCcceEEEeccCceEE---cHHHHHHHHhccC----CCCcceEEEeecccCCC
Confidence 11111111110 001279999999999987 5566666666665 22221111222211 11
Q ss_pred eeccCcccceeeecccCCcccCCCCCCCCcc---ceEEeeccccChhHHHHHhhhhccCCccccchhhhhhhhhcCC
Q 015555 235 IRARTKKFHRRVYDLRGSVKCTNISEGPPCT---GFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGD 308 (405)
Q Consensus 235 ~R~~~~~vHr~~~~~~g~~~C~~~s~~ppcT---~FVEiMAPVFSR~Awrcvw~miqNDlvhGWGLDf~w~~Ca~g~ 308 (405)
.|.+.+ .|= -+-..-||+ .|+=.|+-|+|+++-+.+...-. .+..-|-=|-.++-|++.+
T Consensus 231 ~R~~~~------------Kwy-Vp~~~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~-~~~~~~iEDV~~g~~l~~~ 293 (349)
T KOG2287|consen 231 IRDKTS------------KWY-VPESEYPCSVYPPYASGPGYVISGDAARRLLKASK-HLKFFPIEDVFVGGCLAED 293 (349)
T ss_pred CCCCCC------------CCc-cCHHHCCCCCCCCcCCCceeEecHHHHHHHHHHhc-CCCccchHHHHHHHHHHHh
Confidence 222221 110 000122333 34558889999999999887444 4667776677888999853
No 41
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.65 E-value=32 Score=38.08 Aligned_cols=142 Identities=25% Similarity=0.314 Sum_probs=81.4
Q ss_pred EEEEEEeCCCCCc-cCCcCCCCceeEEEeeccchhhhhccccCccccCCccEEEEecCccccCCCCHHHHHHHHHHhCCc
Q 015555 138 TVILFHYDGDVNA-WRGLDWSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFE 216 (405)
Q Consensus 138 dv~LFhYDg~vd~-W~d~~ws~~aiHv~a~kqtKWw~akRfLHPdiva~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLe 216 (405)
-|.+|-|-..+++ ...+. -.-|+-.+.|-..-+.-++||--+.+.|||++|--||..|++|-.-+++.- +.
T Consensus 52 rv~~F~~~~~i~~~~a~~~---~vs~~d~r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~h-----ms 123 (681)
T KOG3708|consen 52 RVHLFADSSRIDNDLAQLT---NVSPYDLRGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDH-----MS 123 (681)
T ss_pred eeEEeeccccccccHhhcc---ccCccccCccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhh-----cc
Confidence 4777777766653 33321 122443344433444455666668899999999999999998877776643 44
Q ss_pred cccCCcCCCCCceeeeeeeeccCcccceeeecccCCcccCCCCCCCCccceEEeeccccChhHHHHHhhhhc---cCCcc
Q 015555 217 ISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQ---NDLVH 293 (405)
Q Consensus 217 ISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~g~~~C~~~s~~ppcT~FVEiMAPVFSR~Awrcvw~miq---NDlvh 293 (405)
|-||-.-.. . .+ -|+++|.-. || =.+|+.+++.+.+-.. ||. .
T Consensus 124 in~dlymGE-------------------e-~~-~gs~rC~l~------~G------~LLS~s~l~~lrnnle~C~~~~-l 169 (681)
T KOG3708|consen 124 INEDLYMGE-------------------E-AE-DGSGRCRLD------TG------MLLSQSLLHALRNNLEGCRNDI-L 169 (681)
T ss_pred cccccccch-------------------h-hh-CccCccccc------cc------eeecHHHHHHHHhhHHHhhccc-c
Confidence 555432210 0 11 467778644 12 2467777665544222 322 2
Q ss_pred ccchhhhhhhhhcCCCCCeEEEEeeeeEEecCCC
Q 015555 294 GWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQGIQ 327 (405)
Q Consensus 294 GWGLDf~w~~Ca~g~~~~kiGVVDa~~VvH~g~p 327 (405)
.=-=|-++++|++. .+ +|| . .-.|+|++
T Consensus 170 sad~d~~lgrCi~~-At-~v~---C-~~~hQGvr 197 (681)
T KOG3708|consen 170 SADPDEWLGRCIQD-AT-GVG---C-KPLHQGVR 197 (681)
T ss_pred cCCcHHHHHHHHHH-hh-cCC---c-cchhhhHH
Confidence 22236888999984 32 455 2 23577765
No 42
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=25.57 E-value=48 Score=30.40 Aligned_cols=48 Identities=25% Similarity=0.586 Sum_probs=34.7
Q ss_pred hhhhccccCccccCCccEEEEecCc-------cccCCCCHH-----------HHHHHHHHhCCccccCCcCC
Q 015555 171 WWFAKRFLHPDVVSNYDYIFLWDED-------LGVENFDPR-----------RYLEIVKSEGFEISQPALDP 224 (405)
Q Consensus 171 Ww~akRfLHPdiva~YDYIflwDDD-------L~vd~f~i~-----------ryf~Ivr~~gLeISQPALd~ 224 (405)
=|+++||+-|+ =+++|+.++. .+...||+. .|=-++++||| ..|||..
T Consensus 15 ~WLIrRFIDp~----A~F~fv~~~~v~~~~~~~~A~pFD~~ga~~tH~g~~cTFe~ll~~f~L--~dpaL~~ 80 (135)
T PF09828_consen 15 PWLIRRFIDPE----AEFLFVPPPEVLDVACPFDAIPFDIPGAEFTHRGDRCTFEVLLASFGL--DDPALAR 80 (135)
T ss_pred HHHHHHhcCCC----ceEEEeCchhhccccccCCCCcccCCCCeeeeeCCcccHHHHHHHhCC--CCHHHHH
Confidence 59999999885 3678888776 222234432 36678899999 8999976
No 43
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=25.33 E-value=3.2e+02 Score=26.78 Aligned_cols=90 Identities=20% Similarity=0.246 Sum_probs=61.4
Q ss_pred EEeccCcccccHHHHHhhcCCCCcE--EEEEEeCCCCCccCCcC--------CCCceeEEEeeccchhhhhccccCcccc
Q 015555 114 AIPAGIKQKDNVDAIVRKFLPENFT--VILFHYDGDVNAWRGLD--------WSNKAIHIAAQNQTKWWFAKRFLHPDVV 183 (405)
Q Consensus 114 a~~VG~kqk~~Vd~~v~kf~~~nFd--v~LFhYDg~vd~W~d~~--------ws~~aiHv~a~kqtKWw~akRfLHPdiv 183 (405)
+++-|.-....++.+..+| +|+ |.++-|.+..+++=|.. =.+-.|.| -||||+.
T Consensus 2 vi~~G~yGeR~~~~i~~~~---~~~~~v~~~~~p~~l~efId~pee~Lp~i~~~Dl~I~y-------------~lHPDl~ 65 (217)
T PF02593_consen 2 VIYDGKYGERVIENIKNYF---DFCRSVIVYEIPEDLPEFIDDPEEYLPKIPEADLLIAY-------------GLHPDLT 65 (217)
T ss_pred eeeeCcchHHHHHHHHhcC---CCCceEEEEeCCccccccccChHHHccCCCCCCEEEEe-------------ccCchhH
Confidence 3444555555566666654 677 88898887666532211 11112222 1699985
Q ss_pred ---------CCccEEEEecCccccCCCCHHHHHHHHHHhCCccccCC
Q 015555 184 ---------SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA 221 (405)
Q Consensus 184 ---------a~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPA 221 (405)
+.+.+|.++-++-. .-..+.+-+..+++|+++.-|-
T Consensus 66 ~~l~~~~~e~g~kavIvp~~~~~--~g~~~~lk~~~e~~gi~~~~P~ 110 (217)
T PF02593_consen 66 YELPEIAKEAGVKAVIVPSESPK--PGLRRQLKKQLEEFGIEVEFPK 110 (217)
T ss_pred HHHHHHHHHcCCCEEEEecCCCc--cchHHHHHHHHHhcCceeecCc
Confidence 78999999998887 6777899999999999999884
No 44
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=25.15 E-value=1.5e+02 Score=30.34 Aligned_cols=102 Identities=17% Similarity=0.281 Sum_probs=63.9
Q ss_pred cEEEEeccCcccccHHHHHh---hcCCCCcEEEEEEeCCC-------CCccCCc--CCCCceeEEEeeccc---hhhh--
Q 015555 111 NLLAIPAGIKQKDNVDAIVR---KFLPENFTVILFHYDGD-------VNAWRGL--DWSNKAIHIAAQNQT---KWWF-- 173 (405)
Q Consensus 111 ~Lva~~VG~kqk~~Vd~~v~---kf~~~nFdv~LFhYDg~-------vd~W~d~--~ws~~aiHv~a~kqt---KWw~-- 173 (405)
.|.+++||..- ..+-.+++ .+....+.+.+|.-|.. .++|... .+.+..+|-.....+ .|-.
T Consensus 2 ~~~vv~~g~~~-~~~~~~lkSil~~n~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~ws~l~ 80 (304)
T cd06430 2 HLAVVACGERL-EETLTMLKSAIVFSQKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEWKKLF 80 (304)
T ss_pred EEEEEEcCCcH-HHHHHHHHHHHHhCCCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhhhhcc
Confidence 47889999983 33333333 23456899999985532 2223111 222234443332222 4533
Q ss_pred ----hccccCccccCCccEEEEecCccccCCCCHHHHHHHHHHhC
Q 015555 174 ----AKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEG 214 (405)
Q Consensus 174 ----akRfLHPdiva~YDYIflwDDDL~vd~f~i~ryf~Ivr~~g 214 (405)
..|++=|+++.++|-|.-.|-|+.+ .-++..++++.+..+
T Consensus 81 ~~~~y~RL~ip~lLp~~dkvLYLD~Dii~-~~dI~eL~~~~~df~ 124 (304)
T cd06430 81 KPCAAQRLFLPSLLPDVDSLLYVDTDILF-LRPVEEIWSFLKKFN 124 (304)
T ss_pred cHHHHHHHHHHHHhhhhceEEEeccceee-cCCHHHHHHHHhhcC
Confidence 3467789999999999999999998 668999999866553
No 45
>PRK10073 putative glycosyl transferase; Provisional
Probab=25.13 E-value=66 Score=32.06 Aligned_cols=107 Identities=13% Similarity=0.159 Sum_probs=60.2
Q ss_pred CCccEEEEeccCcccccHHHHHhhcC---CCCcEEEEEEeCCCCCccCC-c-CCC--CceeEEEe-eccchhhhhccccC
Q 015555 108 SNRNLLAIPAGIKQKDNVDAIVRKFL---PENFTVILFHYDGDVNAWRG-L-DWS--NKAIHIAA-QNQTKWWFAKRFLH 179 (405)
Q Consensus 108 ~~k~Lva~~VG~kqk~~Vd~~v~kf~---~~nFdv~LFhYDg~vd~W~d-~-~ws--~~aiHv~a-~kqtKWw~akRfLH 179 (405)
.++.-|++||=... ..+...+.-.. ..+|.|++.. ||.+|+=.+ + +|. ...+++.. .++.. -.+...
T Consensus 5 ~p~vSVIIP~yN~~-~~L~~~l~Sl~~Qt~~~~EIIiVd-DgStD~t~~i~~~~~~~~~~i~vi~~~n~G~-~~arN~-- 79 (328)
T PRK10073 5 TPKLSIIIPLYNAG-KDFRAFMESLIAQTWTALEIIIVN-DGSTDNSVEIAKHYAENYPHVRLLHQANAGV-SVARNT-- 79 (328)
T ss_pred CCeEEEEEeccCCH-HHHHHHHHHHHhCCCCCeEEEEEe-CCCCccHHHHHHHHHhhCCCEEEEECCCCCh-HHHHHH--
Confidence 35577888884443 44444443221 2578777775 777653111 1 111 12333322 23221 111110
Q ss_pred ccccCCccEEEEecCccccCCCCHHHHHHHHHHhCCcccc
Q 015555 180 PDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQ 219 (405)
Q Consensus 180 Pdiva~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQ 219 (405)
-=-.+..|||++.|.|-.++...++++++.++..++++..
T Consensus 80 gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 80 GLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred HHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 0013577999999999999888889999998888877754
No 46
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=25.03 E-value=1.1e+02 Score=32.85 Aligned_cols=165 Identities=17% Similarity=0.186 Sum_probs=96.3
Q ss_pred CccEEEEeccCccc---ccHHHHHhhcCCCCcEEEEEEeCCCCCccCCcCCCCceeEEEeeccchhhhhccccCccc-cC
Q 015555 109 NRNLLAIPAGIKQK---DNVDAIVRKFLPENFTVILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHPDV-VS 184 (405)
Q Consensus 109 ~k~Lva~~VG~kqk---~~Vd~~v~kf~~~nFdv~LFhYDg~vd~W~d~~ws~~aiHv~a~kqtKWw~akRfLHPdi-va 184 (405)
++|=+-+.|-.+.- +.|..+++|++ |-|--||. +|...+=+ ..|| | ++|-+ .+
T Consensus 113 ~~~ElLfcv~s~eDpAi~vv~~Ll~kyp--~VdAklf~-gG~~vg~n------pKIn----N----------~mpgy~~a 169 (431)
T KOG2547|consen 113 HKYELLFCVESSEDPAIEVVERLLKKYP--NVDAKLFF-GGEKVGLN------PKIN----N----------MMPGYRAA 169 (431)
T ss_pred CceEEEEEEccCCCcHHHHHHHHHhhCC--CcceEEEE-cccccccC------hhhh----c----------cCHHHHHh
Confidence 46766677766543 34888999986 77777775 33322222 2332 1 35655 78
Q ss_pred CccEEEEecCccccCCCCHHHHHHHHHH---hCCccccCCcCCCCCceeeeeeeecc-CcccceeeecccCCcccCCCCC
Q 015555 185 NYDYIFLWDEDLGVENFDPRRYLEIVKS---EGFEISQPALDPNSTEIHHKFTIRAR-TKKFHRRVYDLRGSVKCTNISE 260 (405)
Q Consensus 185 ~YDYIflwDDDL~vd~f~i~ryf~Ivr~---~gLeISQPALd~~s~~i~h~iT~R~~-~~~vHr~~~~~~g~~~C~~~s~ 260 (405)
.||||++.|+|+.+-..++-.+-.-|.+ .+|-=--|-.--..|+ .+|+-+. -...|-|+|-.
T Consensus 170 ~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~dr~Gf---~atle~~~fgTsh~r~yl~----------- 235 (431)
T KOG2547|consen 170 KYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCKDRQGF---DATLEQVYFGTSHPRIYLS----------- 235 (431)
T ss_pred cCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCceeeccccc---hhhhhheeeccCCceEEEc-----------
Confidence 9999999999999999998888777763 2332222221111111 1333222 22467666642
Q ss_pred CCCccceEE--eeccccChhHHHHHhhhhccCCccccch--hhhhhhhhcCCCCCeEEEE
Q 015555 261 GPPCTGFVE--GMAPVFSRSAWYCAWHLIQNDLVHGWGM--DMKLGYCAQGDRTKNVGII 316 (405)
Q Consensus 261 ~ppcT~FVE--iMAPVFSR~Awrcvw~miqNDlvhGWGL--Df~w~~Ca~g~~~~kiGVV 316 (405)
-+|++|+= .|--...++|+...=.+. ..||=| ||-..+|.- .++.+.+++
T Consensus 236 -~n~~~~~c~tgms~~mrK~~ld~~ggi~----~f~~yLaedyFaaksll-SRG~ksais 289 (431)
T KOG2547|consen 236 -GNVLGFNCSTGMSSMMRKEALDECGGIS----AFGGYLAEDYFAAKSLL-SRGWKSAIS 289 (431)
T ss_pred -cccccccccccHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHH-hhhhhhhhc
Confidence 24555553 566677788887543322 134433 677778876 467776664
No 47
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=24.76 E-value=77 Score=28.38 Aligned_cols=31 Identities=19% Similarity=0.067 Sum_probs=26.4
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHHhC
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEG 214 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~~g 214 (405)
+.+|||++.|+|..++...+.+.+..+.+..
T Consensus 83 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 83 SSGRYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred cCCCEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 6889999999999999988888887776654
No 48
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=23.48 E-value=38 Score=34.99 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=33.8
Q ss_pred cCCCCCCCCccceEEeeccccChhHHHHHhhhhccCCcccc
Q 015555 255 CTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGW 295 (405)
Q Consensus 255 C~~~s~~ppcT~FVEiMAPVFSR~Awrcvw~miqNDlvhGW 295 (405)
|+-+..+.--|.|||-+-|||++.+..-+--..+..++-||
T Consensus 80 ~am~~sg~~is~~~e~~d~V~q~q~~~~l~~tGrp~~VVGW 120 (316)
T KOG1555|consen 80 FAMPQSGTGISKFVEAVDPVFQTQMMDLLKQTGRPELVVGW 120 (316)
T ss_pred eccccccceecccchhccHHHHHHHHHHHHhcCCcceEEee
Confidence 44455566778899999999999999988877777788898
No 49
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=21.99 E-value=86 Score=26.55 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=28.9
Q ss_pred CcchhhhHhhhhcCCCcccccceee---ehhhHHHHHHHHHHHHhhhcchhh
Q 015555 1 MKSIKTWRLLKRNSFSDGVKFGVKM---KQLQFMAIMCTVMLFVVYRTTYYQ 49 (405)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~f~~~~~~~~~ 49 (405)
|.|+-.+-+.-..+-.....+++.. ..+-|+.++|+.+++++.|.+.+-
T Consensus 1 M~s~~~~~s~~~~s~~~~~~~~~~~eqkt~faFV~~L~~fL~~liVRCfrIl 52 (81)
T PF11057_consen 1 MSSTYCLPSPLPMSGNPLSASSLDLEQKTAFAFVGLLCLFLGLLIVRCFRIL 52 (81)
T ss_pred CCCcccCCCCcccCCCCCcccccccccceeehHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333222223333444433 236788999999999999999854
No 50
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=21.61 E-value=93 Score=27.17 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=25.1
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHH
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKS 212 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~ 212 (405)
+.||||++.|.|..++...+.++.+.+..
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 46999999999999998888888887753
No 51
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=20.74 E-value=62 Score=28.38 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=32.5
Q ss_pred EEEEecCccccCCCCHHHHHHHHHHhCCccccCCcCCC
Q 015555 188 YIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPN 225 (405)
Q Consensus 188 YIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~ 225 (405)
||.+.|+|..++.....+..+.++.-+..+.|+.....
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~ 38 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFR 38 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEec
Confidence 78999999999998899998888855888888887653
No 52
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=20.62 E-value=72 Score=32.11 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=29.3
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHHhCCcccc
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQ 219 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQ 219 (405)
+.||||.+.|.|..++..-+.+..+.++..+..+.+
T Consensus 125 a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~ 160 (373)
T TIGR03472 125 ARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVT 160 (373)
T ss_pred ccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEe
Confidence 689999999999999888888888777655655544
No 53
>PLN02867 Probable galacturonosyltransferase
Probab=20.25 E-value=41 Score=36.96 Aligned_cols=34 Identities=24% Similarity=0.455 Sum_probs=29.7
Q ss_pred ccccCccccCCccEEEEecCccccCCCCHHHHHHH
Q 015555 175 KRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEI 209 (405)
Q Consensus 175 kRfLHPdiva~YDYIflwDDDL~vd~f~i~ryf~I 209 (405)
.||+=||++.++|-|...|+|+-|.. |+..++++
T Consensus 334 lRflIPeLLP~LdKVLYLD~DVVVqg-DLseLwdi 367 (535)
T PLN02867 334 LRIYIPELFPDLNKIVFLDDDVVVQH-DLSSLWEL 367 (535)
T ss_pred HHHHHHHHhhccCeEEEecCCEEEcC-chHHHHhC
Confidence 45566999999999999999999977 88888876
No 54
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=20.24 E-value=1.1e+02 Score=32.78 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=61.4
Q ss_pred ccccCCCcc----cccCCCCCCcCcccCCCCCccEEEEeccCcc--cccHHHHHhhcCCCCc-EEEEEEeCCCCCccCCc
Q 015555 82 IVQARSDLE----LRPLWSTSSSRKKFGVYSNRNLLAIPAGIKQ--KDNVDAIVRKFLPENF-TVILFHYDGDVNAWRGL 154 (405)
Q Consensus 82 iv~~~sd~~----lr~Lwg~p~~~~~~~~~~~k~Lva~~VG~kq--k~~Vd~~v~kf~~~nF-dv~LFhYDg~vd~W~d~ 154 (405)
|-..-++++ +|.=||...+..++........+.+-+|... ...+|+.|.+-. ..| ||++..+ +|....+
T Consensus 145 I~Sap~~~~RR~AIR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea-~~ygDIL~lDf---vDsY~NL 220 (408)
T PLN03193 145 INTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAED-RKHGDFLRLDH---VEGYLEL 220 (408)
T ss_pred EeCCCCCHHHHHHHHHHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHH-HHhCCEEEEec---ccccccc
Confidence 334445554 4567886543222111234577889999865 345788886542 333 8888754 3444443
Q ss_pred CCCCceeEEEeeccchhhhhccccCccccCCccEEEEecCccccCCCCHHHHHHHHHHh
Q 015555 155 DWSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSE 213 (405)
Q Consensus 155 ~ws~~aiHv~a~kqtKWw~akRfLHPdiva~YDYIflwDDDL~vd~f~i~ryf~Ivr~~ 213 (405)
.. +.+ -..+| +.+ ++ +++|++=-|||+-|. +.++++..+++
T Consensus 221 T~--KTl-----~~f~w--A~~--~~----dAkF~mK~DDDvfVn---v~~L~~~L~~~ 261 (408)
T PLN03193 221 SA--KTK-----TYFAT--AVA--MW----DADFYVKVDDDVHVN---IATLGETLVRH 261 (408)
T ss_pred hH--HHH-----HHHHH--HHH--cC----CCeEEEEcCCCceEc---HHHHHHHHHhc
Confidence 21 111 11333 222 23 579999999999995 44555555443
Done!