Query 015555
Match_columns 405
No_of_seqs 143 out of 165
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 14:39:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015555.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015555hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 78.1 1.3 9.2E-05 38.6 5.3 142 183-329 105-256 (328)
2 d2bo4a1 c.68.1.18 (A:2-382) Ma 60.7 2 0.00015 40.7 2.8 175 111-306 1-199 (381)
3 d1qg8a_ c.68.1.1 (A:) Spore co 56.9 45 0.0033 26.8 10.8 30 184-213 87-116 (255)
4 d1omza_ c.68.1.15 (A:) Alpha-1 51.4 2.5 0.00018 32.9 1.4 38 183-220 79-116 (265)
5 d1s4na_ c.68.1.16 (A:) Glycoli 19.4 26 0.0019 32.5 2.7 38 179-220 131-175 (339)
6 d1xdpa4 d.136.1.4 (A:502-688) 18.7 28 0.0021 29.8 2.6 32 267-298 120-154 (187)
7 d1klla_ d.32.1.2 (A:) Mitomyci 17.9 42 0.0031 24.3 3.2 37 202-240 82-118 (128)
8 d2o8ra4 d.136.1.4 (A:506-691) 17.6 21 0.0015 30.6 1.5 32 268-299 120-154 (186)
9 d1vl2a1 c.26.2.1 (A:2-169) Arg 16.7 30 0.0022 25.2 2.0 35 109-147 2-36 (168)
10 d1ga8a_ c.68.1.4 (A:) Galactos 14.6 40 0.0029 28.3 2.5 86 111-208 32-117 (282)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=78.12 E-value=1.3 Score=38.61 Aligned_cols=142 Identities=15% Similarity=0.061 Sum_probs=73.3
Q ss_pred cCCccEEEEecCccccCCCCHHHHHHHHHHhCCccccCCcCCCCCc-eee----eeeeeccCccccee--eecccCCccc
Q 015555 183 VSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTE-IHH----KFTIRARTKKFHRR--VYDLRGSVKC 255 (405)
Q Consensus 183 va~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~-i~h----~iT~R~~~~~vHr~--~~~~~g~~~C 255 (405)
.+.-|||++.|+|..++.-.++++++.+.+..-.+..|.++.-... ..+ ..+.-.-...++.. .+........
T Consensus 105 ~a~gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (328)
T d1xhba2 105 VSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRR 184 (328)
T ss_dssp HCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHT
T ss_pred hhhcceeeecCcccccChhHHHHHHHHHhcCCCeEEecceeeeccCceeeccCCccccccccccccccccccchhhhhcc
Confidence 4678999999999999999999999999998887777765321100 000 00000000000000 0000000000
Q ss_pred CCCCCCCCccceEEeeccccChhHHHHHhhhhccCCccccc---hhhhhhhhhcCCCCCeEEEEeeeeEEecCCCCC
Q 015555 256 TNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWG---MDMKLGYCAQGDRTKNVGIIDSEYVVHQGIQTL 329 (405)
Q Consensus 256 ~~~s~~ppcT~FVEiMAPVFSR~Awrcvw~miqNDlvhGWG---LDf~w~~Ca~g~~~~kiGVVDa~~VvH~g~ptl 329 (405)
....+.+..+.++-.-+=.++|++|..+= .+. +....|| +|+.+..... +.+|..+-...|.|....+.
T Consensus 185 ~~~~~~~~~~~~~~g~~~~irr~~f~~vG-gfD-e~~~~~g~ED~Dl~~R~~~~---G~~i~~~p~~~v~H~~~~~~ 256 (328)
T d1xhba2 185 KGDRTLPVRTPTMAGGLFSIDRDYFQEIG-TYD-AGMDIWGGENLEISFRIWQC---GGTLEIVTCSHVGHVFRKAT 256 (328)
T ss_dssp TTCTTSCEECSBCCSSSEEEEHHHHHHTT-SCC-TTSCTTCCCCSHHHHHHHHT---TCEEEEEEEEEEEEEC----
T ss_pred ccccccccccceecceeeeeeHHHHHHhC-CCC-CCCcCcCchHHHHHHHHHHh---CCeEEEeCCeEEEEeCCCCC
Confidence 01111222223333222246899999763 333 3345565 4455543333 46899999999999744433
No 2
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}
Probab=60.67 E-value=2 Score=40.65 Aligned_cols=175 Identities=12% Similarity=0.113 Sum_probs=90.9
Q ss_pred cEEEEeccCcccccHHHHH---hhcCCCCcEEEEEEeCCCCCccCCcCCCC------ceeEEEee--------ccch---
Q 015555 111 NLLAIPAGIKQKDNVDAIV---RKFLPENFTVILFHYDGDVNAWRGLDWSN------KAIHIAAQ--------NQTK--- 170 (405)
Q Consensus 111 ~Lva~~VG~kqk~~Vd~~v---~kf~~~nFdv~LFhYDg~vd~W~d~~ws~------~aiHv~a~--------kqtK--- 170 (405)
.||++|+=..+...+-..+ .. ....+++|+.=|++.|.|...+-.. ..+++... +..|
T Consensus 1 slVVIP~~NEe~~il~~~v~~~a~--~P~~~eIvVvDdsSdDtt~~i~~~~~~~~~~~~~~v~~~~~~~l~~~~~GKG~g 78 (381)
T d2bo4a1 1 SLVVFPFKHEHPEVLLHNVRVAAA--HPRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDG 78 (381)
T ss_dssp CEEEEECCSSCHHHHHHHHHHHHH--STTCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHH
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHh--CCCeeEEEEEcCCCCCcHHHHHHHhhhhhccccccchhhhhcccccccCCCcHH
Confidence 3788887776544433333 33 2467888887555655664321100 01112111 1122
Q ss_pred -hhhhccccCccccCCccEEEEecCccc-cCCCCHHHHHHHHHHhCCccccCCcCCCC--CceeeeeeeeccCcccceee
Q 015555 171 -WWFAKRFLHPDVVSNYDYIFLWDEDLG-VENFDPRRYLEIVKSEGFEISQPALDPNS--TEIHHKFTIRARTKKFHRRV 246 (405)
Q Consensus 171 -Ww~akRfLHPdiva~YDYIflwDDDL~-vd~f~i~ryf~Ivr~~gLeISQPALd~~s--~~i~h~iT~R~~~~~vHr~~ 246 (405)
+.-+..-+ --+.+|+|.+.|-|+. .+...+.+++..++ .|-++.-|.....+ |.+++.+. ++-. + .+
T Consensus 79 ~~~A~~~g~---~~a~gd~lvflDADl~~~~pe~i~~L~~~i~-~g~d~V~g~y~R~~~~grvt~~l~--~pll--~-~l 149 (381)
T d2bo4a1 79 MNTALRYFL---EETQWERIHFYDADITSFGPDWITKAEEAAD-FGYGLVRHYFPRASTDAMITWMIT--RTGF--A-LL 149 (381)
T ss_dssp HHHHHHHHH---HHCCCSEEEECCTTCSSCCHHHHHHHHHHHH-TTCSEEEEECCCCTTSCHHHHHTH--HHHH--H-HH
T ss_pred HHHHHHHHH---HhCCCCEEEEEcCCcCcCCHHHHHHHHHHHh-hhcCeEEEeeccccCCCceehHhh--HHHH--H-HH
Confidence 11111111 1257899999999995 56777899999875 67888777443322 23332111 1111 0 11
Q ss_pred ecccCCcccCCCCCCCCccceEEeeccccChhHHHHHhhhhccCCccccchhhhhhhhhc
Q 015555 247 YDLRGSVKCTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQ 306 (405)
Q Consensus 247 ~~~~g~~~C~~~s~~ppcT~FVEiMAPVFSR~Awrcvw~miqNDlvhGWGLDf~w~~Ca~ 306 (405)
+. ..|... -.-|-+||. .|+|++.+++.+.-.=+.-.|||+|..+..-+.
T Consensus 150 ~~----~~~~~~-i~dPl~G~~-----a~~R~~~~~L~~~~~v~~~~~~G~Di~lt~~A~ 199 (381)
T d2bo4a1 150 WP----HTELSW-IEQPLGGEL-----LMRREVAAMLYEDERVRRRSDWGIDTLYTFVTV 199 (381)
T ss_dssp CT----TSSGGG-CSCTTCCCE-----EEEHHHHHHHHHCHHHHTCCSTTHHHHHHHHHH
T ss_pred hh----hhcccc-cccCCcccc-----eeeHHHHHHhhhhccccccCCcccchHHHHHHH
Confidence 10 011101 112334555 789999998865322112369999988776554
No 3
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=56.92 E-value=45 Score=26.78 Aligned_cols=30 Identities=10% Similarity=-0.003 Sum_probs=24.2
Q ss_pred CCccEEEEecCccccCCCCHHHHHHHHHHh
Q 015555 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSE 213 (405)
Q Consensus 184 a~YDYIflwDDDL~vd~f~i~ryf~Ivr~~ 213 (405)
+.+|||+++|+|-..+.-.+++.++.++++
T Consensus 87 a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~ 116 (255)
T d1qg8a_ 87 AEGEYITYATDDNIYMPDRLLKMVRELDTH 116 (255)
T ss_dssp CCCSEEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred cccccccccccccccccchHHHHHHHHHhC
Confidence 578999999988777766678888877765
No 4
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=51.43 E-value=2.5 Score=32.86 Aligned_cols=38 Identities=13% Similarity=-0.018 Sum_probs=30.8
Q ss_pred cCCccEEEEecCccccCCCCHHHHHHHHHHhCCccccC
Q 015555 183 VSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQP 220 (405)
Q Consensus 183 va~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQP 220 (405)
.+..|||++.|+|..++.-.+++.++.+.++.-.+.+.
T Consensus 79 ~a~ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~ 116 (265)
T d1omza_ 79 EVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGF 116 (265)
T ss_dssp TCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEES
T ss_pred hCCcCEEEEeCcccCCCHHHHHHHHHHHHhCCCcceec
Confidence 45779999999999998888888888888776555444
No 5
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.41 E-value=26 Score=32.53 Aligned_cols=38 Identities=21% Similarity=0.529 Sum_probs=26.7
Q ss_pred CccccCCccEEEEecCccccCC---CCHHHHHHHHHHh----CCccccC
Q 015555 179 HPDVVSNYDYIFLWDEDLGVEN---FDPRRYLEIVKSE----GFEISQP 220 (405)
Q Consensus 179 HPdiva~YDYIflwDDDL~vd~---f~i~ryf~Ivr~~----gLeISQP 220 (405)
|| ++.+|||+|=.|+|+.+.. +|+ |+.|++. |.-|+..
T Consensus 131 ~p-~L~~YdYywRvdpD~~f~cdI~yD~---F~~M~~n~k~YGf~~~~~ 175 (339)
T d1s4na_ 131 HE-LLEEYDWYWRVEPDIKLYCDINYDV---FKWMQENEKVYGFTVSIH 175 (339)
T ss_dssp SG-GGTTCSEEEECCTTCEECSCCCSCH---HHHHHHTTCCEEESCEEE
T ss_pred ch-hhhccceEEEeCCCcEEecCCCCCH---HHHHhhcCCeEEEEEeec
Confidence 66 7899999999999998853 555 4555544 4445543
No 6
>d1xdpa4 d.136.1.4 (A:502-688) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}
Probab=18.67 E-value=28 Score=29.78 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=21.9
Q ss_pred eEEeeccccChhHHHHHhhhh---ccCCccccchh
Q 015555 267 FVEGMAPVFSRSAWYCAWHLI---QNDLVHGWGMD 298 (405)
Q Consensus 267 FVEiMAPVFSR~Awrcvw~mi---qNDlvhGWGLD 298 (405)
=||+|+||...+.=..+...+ -+|++.+|=||
T Consensus 120 RVEv~~PI~d~~~k~~i~~il~~~L~Dn~ka~~L~ 154 (187)
T d1xdpa4 120 RIEVATPLLDPRLKQRVLDIIDILFSDTVKARYID 154 (187)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHTCCSSEEECC
T ss_pred hhheeeEeCCHHHHHHHHHHHHHHhhhhHHHheeC
Confidence 499999999966654444433 35777777665
No 7
>d1klla_ d.32.1.2 (A:) Mitomycin resistance protein D, MRD {Streptomyces lavendulae [TaxId: 1914]}
Probab=17.90 E-value=42 Score=24.33 Aligned_cols=37 Identities=5% Similarity=0.017 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHhCCccccCCcCCCCCceeeeeeeeccCc
Q 015555 202 DPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTK 240 (405)
Q Consensus 202 ~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~ 240 (405)
++++.++-+++.|..|.+|.-+...|. +-+..+.+..
T Consensus 82 ~l~~~~~~l~~~G~~~~~~p~~~~~G~--~~~~~~DPdG 118 (128)
T d1klla_ 82 SVDKKYAELVDAGYEGHLKPWNAVWGQ--RYAIVKDPDG 118 (128)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECTTSE--EEEEEECTTS
T ss_pred hhHHHHHHHHhccCccccCCeEcCCCc--EEEEEECCCC
Confidence 477899999999999988876543332 3345555553
No 8
>d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=17.64 E-value=21 Score=30.63 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=21.4
Q ss_pred EEeeccccChhHHHHHhhh---hccCCccccchhh
Q 015555 268 VEGMAPVFSRSAWYCAWHL---IQNDLVHGWGMDM 299 (405)
Q Consensus 268 VEiMAPVFSR~Awrcvw~m---iqNDlvhGWGLDf 299 (405)
||+++||...+.=+.+... .-+|.+.+|=||-
T Consensus 120 VEv~~PI~d~~~k~~l~~iL~~~l~Dn~kaw~L~~ 154 (186)
T d2o8ra4 120 IETACPVLDPTLRREIIDILEIQLRDNIKACRIDS 154 (186)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCCSSCEEECT
T ss_pred eeEEEEeCCHHHHHHHHHHHHHHccccHhhEEECC
Confidence 9999999996654444432 2257777776653
No 9
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=16.66 E-value=30 Score=25.20 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=26.8
Q ss_pred CccEEEEeccCcccccHHHHHhhcCCCCcEEEEEEeCCC
Q 015555 109 NRNLLAIPAGIKQKDNVDAIVRKFLPENFTVILFHYDGD 147 (405)
Q Consensus 109 ~k~Lva~~VG~kqk~~Vd~~v~kf~~~nFdv~LFhYDg~ 147 (405)
.|.+||++-|..|..-.. ++++ .+|+|+.+|.+..
T Consensus 2 ~KIvvalSGGvDS~vl~~-lL~~---~~~~v~a~~~~~~ 36 (168)
T d1vl2a1 2 EKVVLAYSGGLDTSVILK-WLCE---KGFDVIAYVANVG 36 (168)
T ss_dssp CEEEEECCSSHHHHHHHH-HHHH---TTCEEEEEEEESS
T ss_pred CEEEEEeccHHHHHHHHH-HHHH---cCCeEEEEEcccC
Confidence 578999999998877544 4444 4789999988764
No 10
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=14.63 E-value=40 Score=28.35 Aligned_cols=86 Identities=13% Similarity=0.216 Sum_probs=50.3
Q ss_pred cEEEEeccCcccccHHHHHhhcCCCCcEEEEEEeCCCCCccCCcCCCCceeEEEeeccchhhhhccccCccccCCccEEE
Q 015555 111 NLLAIPAGIKQKDNVDAIVRKFLPENFTVILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIF 190 (405)
Q Consensus 111 ~Lva~~VG~kqk~~Vd~~v~kf~~~nFdv~LFhYDg~vd~W~d~~ws~~aiHv~a~kqtKWw~akRfLHPdiva~YDYIf 190 (405)
.+.+++.|..... ...+.+.+...+.+|.+..++.. ....+. ... ..-+++.++ ||+=|+++.+||-|.
T Consensus 32 ~~~il~~~~~~~~-~~~l~~~~~~~~~~i~~~~~~~~--~~~~~~--~~~-----~~~s~~~y~-Rl~l~~~lp~~~kii 100 (282)
T d1ga8a_ 32 RFHVLDAGISEAN-RAAVAANLRGGGGNIRFIDVNPE--DFAGFP--LNI-----RHISITTYA-RLKLGEYIADCDKVL 100 (282)
T ss_dssp EEEEEESSCCHHH-HHHHHHTSGGGTTTEEEEECCGG--GGTTSC--CCC-----TTCCGGGGG-GGGHHHHCCSCSCEE
T ss_pred EEEEEcCCCCHHH-HHHHHHHHHHcCCeEEEEECCch--Hhcccc--ccc-----cccCHHHHH-HHHHhhhCCccceEE
Confidence 4556777776443 33333333344566666665432 122110 011 112455554 455588888999999
Q ss_pred EecCccccCCCCHHHHHH
Q 015555 191 LWDEDLGVENFDPRRYLE 208 (405)
Q Consensus 191 lwDDDL~vd~f~i~ryf~ 208 (405)
..|-|+.|-. +++.+++
T Consensus 101 yLD~D~iv~~-dl~~L~~ 117 (282)
T d1ga8a_ 101 YLDIDVLVRD-SLTPLWD 117 (282)
T ss_dssp EECSSEEECS-CCHHHHT
T ss_pred EecCCEEEec-chHHHHh
Confidence 9999999965 7888874
Done!