Query 015557
Match_columns 404
No_of_seqs 117 out of 232
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 07:25:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015557.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015557hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 1.6E-50 3.5E-55 410.9 9.2 109 288-396 1-111 (506)
2 PF12553 DUF3742: Protein of u 74.8 2.3 5E-05 33.2 2.1 19 24-42 2-20 (54)
3 PF04202 Mfp-3: Foot protein 3 53.2 6.9 0.00015 32.4 1.1 18 20-37 3-20 (71)
4 cd08873 START_STARD14_15-like 47.8 11 0.00024 36.6 1.7 58 330-387 127-210 (235)
5 PF00672 HAMP: HAMP domain; I 47.6 9.1 0.0002 28.2 0.9 28 21-48 3-30 (70)
6 PF13800 Sigma_reg_N: Sigma fa 46.6 8.8 0.00019 31.5 0.7 22 19-40 15-36 (96)
7 PF07172 GRP: Glycine rich pro 42.2 13 0.00029 31.6 1.2 21 23-44 5-25 (95)
8 KOG1619 Cytochrome b [Energy p 42.0 15 0.00033 36.5 1.7 17 22-38 24-40 (245)
9 PRK05696 fliL flagellar basal 41.5 20 0.00043 32.6 2.3 22 21-42 21-46 (170)
10 PF02636 Methyltransf_28: Puta 40.0 19 0.00041 33.9 1.9 75 327-401 77-192 (252)
11 COG1987 FliQ Flagellar biosynt 39.6 20 0.00042 30.9 1.8 16 23-38 56-71 (89)
12 PRK14125 cell division suppres 39.5 22 0.00048 30.5 2.1 19 23-42 11-29 (103)
13 PF08953 DUF1899: Domain of un 38.5 24 0.00053 28.3 2.1 36 341-379 18-56 (65)
14 COG5353 Uncharacterized protei 38.1 22 0.00047 33.5 2.0 50 23-76 13-62 (161)
15 PRK10241 hydroxyacylglutathion 36.2 61 0.0013 30.8 4.7 42 363-404 122-163 (251)
16 cd03128 GAT_1 Type 1 glutamine 35.1 56 0.0012 22.5 3.3 30 366-395 46-77 (92)
17 cd01750 GATase1_CobQ Type 1 gl 34.5 37 0.0008 31.0 2.9 36 368-404 39-79 (194)
18 cd01653 GATase1 Type 1 glutami 34.5 54 0.0012 23.7 3.3 36 367-402 47-84 (115)
19 PF02950 Conotoxin: Conotoxin; 33.5 14 0.0003 28.6 0.0 12 21-32 3-14 (75)
20 PF13665 DUF4150: Domain of un 32.1 23 0.00049 30.8 1.1 17 320-338 10-26 (110)
21 KOG4075 Cytochrome c oxidase, 31.9 34 0.00075 32.4 2.3 31 12-44 93-126 (167)
22 TIGR03413 GSH_gloB hydroxyacyl 30.6 76 0.0017 30.0 4.4 42 363-404 121-162 (248)
23 PRK06010 fliQ flagellar biosyn 29.5 37 0.0008 28.9 1.9 16 23-38 56-71 (88)
24 PRK05700 fliQ flagellar biosyn 28.7 38 0.00083 28.8 1.8 16 23-38 56-71 (89)
25 PLN02595 cytochrome c oxidase 28.2 33 0.00073 30.2 1.4 18 20-38 46-64 (102)
26 PF03779 SPW: SPW repeat; Int 27.8 30 0.00065 26.5 0.9 16 28-43 4-19 (51)
27 PF06781 UPF0233: Uncharacteri 27.7 41 0.0009 28.6 1.9 17 22-38 33-50 (87)
28 PF01313 Bac_export_3: Bacteri 27.4 43 0.00094 27.7 1.9 16 23-38 53-68 (76)
29 TIGR01403 fliQ_rel_III type II 26.9 44 0.00095 28.0 1.8 16 23-38 52-67 (81)
30 PLN02469 hydroxyacylglutathion 26.8 94 0.002 30.0 4.3 44 361-404 128-172 (258)
31 cd03137 GATase1_AraC_1 AraC tr 26.4 83 0.0018 27.5 3.6 31 367-397 65-96 (187)
32 PRK12781 fliQ flagellar biosyn 26.3 45 0.00098 28.4 1.9 16 23-38 56-71 (88)
33 KOG3927 Na+/K+ ATPase, beta su 26.3 27 0.00059 35.5 0.6 30 11-44 38-75 (300)
34 cd03169 GATase1_PfpI_1 Type 1 26.1 72 0.0016 28.1 3.2 28 368-395 78-106 (180)
35 PF09889 DUF2116: Uncharacteri 25.9 34 0.00074 27.2 1.0 18 22-39 39-57 (59)
36 TIGR01402 fliQ flagellar biosy 25.5 47 0.001 28.2 1.8 16 23-38 56-71 (88)
37 PF12911 OppC_N: N-terminal TM 25.2 32 0.0007 25.2 0.7 18 19-36 21-38 (56)
38 PF14998 Ripply: Transcription 25.1 30 0.00064 29.7 0.6 18 325-342 35-54 (87)
39 PF14341 PilX_N: PilX N-termin 25.1 31 0.00068 25.9 0.6 23 20-42 6-28 (51)
40 PRK15350 type III secretion sy 25.0 50 0.0011 28.1 1.9 16 23-38 56-71 (88)
41 PF02635 DrsE: DsrE/DsrF-like 24.9 44 0.00095 26.5 1.5 39 362-403 34-81 (122)
42 COG4360 APA2 ATP adenylyltrans 24.7 44 0.00096 33.9 1.7 52 342-400 140-191 (298)
43 PRK00159 putative septation in 24.1 54 0.0012 28.2 1.9 17 22-38 33-50 (87)
44 PF13908 Shisa: Wnt and FGF in 24.1 50 0.0011 29.8 1.8 25 19-43 80-104 (179)
45 KOG3710 EGL-Nine (EGLN) protei 23.4 57 0.0012 32.9 2.2 46 328-381 155-202 (280)
46 PF14285 DUF4367: Domain of un 23.2 34 0.00074 29.3 0.6 22 20-41 4-25 (168)
47 PF13937 DUF4212: Domain of un 23.0 53 0.0011 27.5 1.6 19 20-38 53-71 (81)
48 PF09680 Tiny_TM_bacill: Prote 23.0 49 0.0011 22.6 1.1 15 20-34 7-21 (24)
49 PF05545 FixQ: Cbb3-type cytoc 22.8 57 0.0012 24.1 1.6 18 21-38 14-31 (49)
50 cd03139 GATase1_PfpI_2 Type 1 22.7 1E+02 0.0022 26.7 3.5 30 368-397 64-94 (183)
51 PLN02398 hydroxyacylglutathion 22.6 1.3E+02 0.0028 30.6 4.6 44 361-404 199-242 (329)
52 COG4736 CcoQ Cbb3-type cytochr 22.6 62 0.0013 26.0 1.9 15 24-38 15-29 (60)
53 PF06724 DUF1206: Domain of Un 22.4 48 0.001 26.0 1.2 25 14-38 42-66 (73)
54 PF03866 HAP: Hydrophobic abun 22.2 56 0.0012 30.5 1.8 14 25-38 5-18 (164)
55 PF12012 DUF3504: Domain of un 22.1 45 0.00098 30.0 1.2 33 320-352 127-159 (172)
56 PRK10299 PhoPQ regulatory prot 22.1 54 0.0012 25.5 1.4 17 21-38 7-23 (47)
57 TIGR02830 spore_III_AG stage I 22.0 91 0.002 29.7 3.2 24 22-45 2-25 (186)
58 PF13172 PepSY_TM_1: PepSY-ass 22.0 37 0.0008 23.5 0.4 22 16-37 10-31 (34)
59 PF14991 MLANA: Protein melan- 21.5 31 0.00067 31.1 0.0 17 21-37 31-47 (118)
60 PF04294 VanW: VanW like prote 21.1 59 0.0013 29.2 1.7 54 308-365 75-128 (132)
61 PF11660 DUF3262: Protein of u 20.9 48 0.0011 27.0 1.0 22 20-41 23-44 (76)
62 PF14021 DUF4237: Protein of u 20.9 43 0.00093 28.3 0.7 8 373-380 65-72 (90)
63 PF11884 DUF3404: Domain of un 20.8 51 0.0011 33.1 1.3 26 340-389 99-124 (262)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=1.6e-50 Score=410.85 Aligned_cols=109 Identities=61% Similarity=1.121 Sum_probs=107.1
Q ss_pred CcccCCChHHHhhhcccccccchhccCCCC--CCCccccCCCCCCCCCCCCCCcccccccCCCCCchhhhhcCccccEEE
Q 015557 288 DYIPCLDNWQAIRKLSSTKHYEHRERHCPE--EAPTCIVPLPEGYKRSIKWPKSRDRIWYHNVPHAKLAEVKGHQNWVKV 365 (404)
Q Consensus 288 DYiPClD~~~a~k~l~~~~~yehRERHCP~--e~~~CLVP~P~GYK~Pi~WPkSRDkiWy~NVPHtkLae~K~~QNWVk~ 365 (404)
|||||+|+.+++++|+++.+|+|||||||. ++++||||+|+|||+|||||+|||+|||+||||++|+++|++||||++
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 799999999999999999999999999995 899999999999999999999999999999999999999999999999
Q ss_pred eCcEEEecCCCCCCcCcHHHHHHHHHhhccc
Q 015557 366 TGEYLTFPGGGTQFKNGALHYIDFIQKVSLF 396 (404)
Q Consensus 366 ~Gd~l~FPGGGTqF~~GA~~YId~I~emi~l 396 (404)
+|++|+|||||||||+||++|||+|++||++
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~ 111 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPL 111 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999998
No 2
>PF12553 DUF3742: Protein of unknown function (DUF3742); InterPro: IPR022213 This domain family is found in bacteria, and is approximately 50 amino acids in length. There is a single completely conserved residue Y that may be functionally important.
Probab=74.80 E-value=2.3 Score=33.15 Aligned_cols=19 Identities=11% Similarity=0.482 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHhhhhccce
Q 015557 24 VVFVGLCLVGVWMLMSSTV 42 (404)
Q Consensus 24 VvFVaLCLVGvWMm~SSsV 42 (404)
|+.++|.+|++||+.++++
T Consensus 2 aLll~f~~iaaw~~~~~~~ 20 (54)
T PF12553_consen 2 ALLLVFAAIAAWMARNPDI 20 (54)
T ss_pred HHHHHHHHHHHHHHhCCcc
Confidence 3447788899999998876
No 3
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=53.24 E-value=6.9 Score=32.35 Aligned_cols=18 Identities=22% Similarity=0.669 Sum_probs=14.5
Q ss_pred eeehhhHHHHHHHHHhhh
Q 015557 20 TVTVVVFVGLCLVGVWML 37 (404)
Q Consensus 20 TvTvVvFVaLCLVGvWMm 37 (404)
.++|+|.|||.|||..-+
T Consensus 3 n~Si~VLlaLvLIg~fAV 20 (71)
T PF04202_consen 3 NLSIAVLLALVLIGSFAV 20 (71)
T ss_pred chhHHHHHHHHHHhhhee
Confidence 367999999999997543
No 4
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=47.81 E-value=11 Score=36.61 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=43.5
Q ss_pred CCCCCCCC-Cccccc----c-------------cCCCCCchhhhhcCccccEEEeCcEEEecCC-C-C------CCcCcH
Q 015557 330 YKRSIKWP-KSRDRI----W-------------YHNVPHAKLAEVKGHQNWVKVTGEYLTFPGG-G-T------QFKNGA 383 (404)
Q Consensus 330 YK~Pi~WP-kSRDki----W-------------y~NVPHtkLae~K~~QNWVk~~Gd~l~FPGG-G-T------qF~~GA 383 (404)
++.|.||| +.||.| | ...|||+.+-..|+-..=..+.|.+++.|-| | | |+--|.
T Consensus 127 ~~~p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~ 206 (235)
T cd08873 127 TTMPSLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKL 206 (235)
T ss_pred EEcCCCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCc
Confidence 56799998 678874 3 1238999888888877777789999999943 3 3 455688
Q ss_pred HHHH
Q 015557 384 LHYI 387 (404)
Q Consensus 384 ~~YI 387 (404)
..||
T Consensus 207 ~~~~ 210 (235)
T cd08873 207 LSYV 210 (235)
T ss_pred ccee
Confidence 8887
No 5
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=47.60 E-value=9.1 Score=28.25 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=20.1
Q ss_pred eehhhHHHHHHHHHhhhhccceecccCC
Q 015557 21 VTVVVFVGLCLVGVWMLMSSTVVPVRDP 48 (404)
Q Consensus 21 vTvVvFVaLCLVGvWMm~SSsV~P~qn~ 48 (404)
+.++++++++++.+|.++.+.+-|++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~~pl~~l 30 (70)
T PF00672_consen 3 VLFLIILLLSLLLAWLLARRITRPLRRL 30 (70)
T ss_dssp HHHHHHHHHHHHHHHH--HTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888899998999997643
No 6
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=46.56 E-value=8.8 Score=31.51 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=16.5
Q ss_pred ceeehhhHHHHHHHHHhhhhcc
Q 015557 19 STVTVVVFVGLCLVGVWMLMSS 40 (404)
Q Consensus 19 sTvTvVvFVaLCLVGvWMm~SS 40 (404)
.|++|.|+++|+|++++++++.
T Consensus 15 ~~~~isi~~~lvi~~i~~~~~~ 36 (96)
T PF13800_consen 15 RTVVISIISALVIFIISFIISA 36 (96)
T ss_pred HHHHHHHhhhhhhHHHHHHhhh
Confidence 4567778888888888887753
No 7
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=42.17 E-value=13 Score=31.59 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHhhhhccceec
Q 015557 23 VVVFVGLCLVGVWMLMSSTVVP 44 (404)
Q Consensus 23 vVvFVaLCLVGvWMm~SSsV~P 44 (404)
+.||++|+|+=|-+ +||-|+-
T Consensus 5 ~~llL~l~LA~lLl-isSevaa 25 (95)
T PF07172_consen 5 AFLLLGLLLAALLL-ISSEVAA 25 (95)
T ss_pred HHHHHHHHHHHHHH-HHhhhhh
Confidence 36778887776554 4455544
No 8
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=42.00 E-value=15 Score=36.49 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=15.0
Q ss_pred ehhhHHHHHHHHHhhhh
Q 015557 22 TVVVFVGLCLVGVWMLM 38 (404)
Q Consensus 22 TvVvFVaLCLVGvWMm~ 38 (404)
.++-|+++||||+||++
T Consensus 24 ~l~G~i~v~lvl~W~~~ 40 (245)
T KOG1619|consen 24 HLLGFITVVLVLYWVNT 40 (245)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37779999999999987
No 9
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=41.54 E-value=20 Score=32.57 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=14.0
Q ss_pred eehhhHHHHHHH----HHhhhhccce
Q 015557 21 VTVVVFVGLCLV----GVWMLMSSTV 42 (404)
Q Consensus 21 vTvVvFVaLCLV----GvWMm~SSsV 42 (404)
+-|++.|+|+|+ |+|||++...
T Consensus 21 iiii~~~~lll~~~g~~~~f~l~~~~ 46 (170)
T PRK05696 21 IIIIVIGVLLALGGGGAAWFFMGSSD 46 (170)
T ss_pred EeeHHHHHHHHHHHHHHHHhhhcCCC
Confidence 445555555555 6999987654
No 10
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=40.02 E-value=19 Score=33.88 Aligned_cols=75 Identities=15% Similarity=0.403 Sum_probs=48.7
Q ss_pred CCCCCCCCCCCCccccc----------ccCCCCCchhhhhcCc--cccEEEe---CcEEEe---c---------------
Q 015557 327 PEGYKRSIKWPKSRDRI----------WYHNVPHAKLAEVKGH--QNWVKVT---GEYLTF---P--------------- 373 (404)
Q Consensus 327 P~GYK~Pi~WPkSRDki----------Wy~NVPHtkLae~K~~--QNWVk~~---Gd~l~F---P--------------- 373 (404)
...+..+|.|-..-..+ +++++||..+...++. +.||.+. +..|.| |
T Consensus 77 ~~~~~~~i~w~~~l~~~p~~~~iiaNE~~DAlP~~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 156 (252)
T PF02636_consen 77 DTEFGDPIRWLDDLEEVPFPGFIIANELFDALPVDRFRKQEGGWRERYVDIDEEKNGRFCFVLSPLSTPSLEEYLPQLGP 156 (252)
T ss_dssp STTTCGCEEEESSGGCS-CCEEEEEESSGGGS--EEEEEETTEEEEEEEEE---TTS-EEEEEESSSSTCHCCCTTCCGG
T ss_pred ccccCCccchhhhhhcccCCEEEEEeeehhcCceeEEEEcCCeEEEEEEEeccccCCceEEEeCCCCCHHHHHHHHHhhH
Confidence 46688899997666555 6899999998866554 5566666 455554 2
Q ss_pred -------CCCCCCcCcHHHHHHHHHhhccc-ceeee
Q 015557 374 -------GGGTQFKNGALHYIDFIQKVSLF-HLSFY 401 (404)
Q Consensus 374 -------GGGTqF~~GA~~YId~I~emi~l-~~~~~ 401 (404)
|--+-++-++.++|+.|.+.++- |+.+.
T Consensus 157 ~~~~~~~g~~~Ei~~~~~~~l~~l~~~~~~~g~~l~ 192 (252)
T PF02636_consen 157 RLPKLPEGYRIEIPTGALQWLEQLAERLPKGGALLI 192 (252)
T ss_dssp G-----TT-EEEE-HCHHHHHHHHHHHCCC-EEEEE
T ss_pred hhccCCCCCEEEECHHHHHHHHHHHHHHhhCCEEEE
Confidence 22223455999999999999998 65543
No 11
>COG1987 FliQ Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=39.57 E-value=20 Score=30.90 Aligned_cols=16 Identities=50% Similarity=0.956 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHhhhh
Q 015557 23 VVVFVGLCLVGVWMLM 38 (404)
Q Consensus 23 vVvFVaLCLVGvWMm~ 38 (404)
|++|++|.|.|=||+.
T Consensus 56 iai~~~l~~~gpWm~~ 71 (89)
T COG1987 56 IAVFLVLILLGPWMLN 71 (89)
T ss_pred HHHHHHHHHHhHHHHH
Confidence 6899999999999974
No 12
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=39.52 E-value=22 Score=30.49 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHhhhhccce
Q 015557 23 VVVFVGLCLVGVWMLMSSTV 42 (404)
Q Consensus 23 vVvFVaLCLVGvWMm~SSsV 42 (404)
+.+||+||+| +|++...+.
T Consensus 11 ~ii~~~l~~~-~~~~~~~~~ 29 (103)
T PRK14125 11 SIFFVLTALV-LLIFVYATV 29 (103)
T ss_pred HHHHHHHHHH-HHHHHHccc
Confidence 3455555555 999884444
No 13
>PF08953 DUF1899: Domain of unknown function (DUF1899); InterPro: IPR015048 This set of proteins are found in various eukaryotic proteins. The function is unknown. ; PDB: 2B4E_A 2AQ5_A.
Probab=38.46 E-value=24 Score=28.28 Aligned_cols=36 Identities=22% Similarity=0.530 Sum_probs=20.0
Q ss_pred cccccCCCCCchhhhhcCccccEEEeCcEEEec---CCCCCC
Q 015557 341 DRIWYHNVPHAKLAEVKGHQNWVKVTGEYLTFP---GGGTQF 379 (404)
Q Consensus 341 DkiWy~NVPHtkLae~K~~QNWVk~~Gd~l~FP---GGGTqF 379 (404)
..-||.|+.-+.. -.++|.|+....+|.|| |||..|
T Consensus 18 ke~~y~~i~vs~~---~~d~n~i~~N~kfiA~~~~~~GGG~~ 56 (65)
T PF08953_consen 18 KEECYDNIRVSTS---SWDSNFIAANPKFIAVPWESGGGGAF 56 (65)
T ss_dssp GGGSEES--B--------SS-CEEE-SSEEEEEB--SSS--E
T ss_pred ccccCcCEEEeCc---cccCCeEEEcCCEEEEEeccCCccEE
Confidence 4568999974444 45789999999999998 355544
No 14
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.14 E-value=22 Score=33.50 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHhhhhccceecccCCCCCcchhhhhhhhccccCCCcccccCCC
Q 015557 23 VVVFVGLCLVGVWMLMSSTVVPVRDPELSSGEAISEVKQRVSEIVSWPFEENKG 76 (404)
Q Consensus 23 vVvFVaLCLVGvWMm~SSsV~P~qn~d~~s~e~~~~vk~~~~~~~s~qfEd~~g 76 (404)
.|+|+|+.|+++-|+. ++..|.++.. .+....+++++.--..-||.=--|
T Consensus 13 ~viflai~~s~~~~~~-~s~~P~~~~~---~qA~~~a~~~~dL~~~d~~~~y~G 62 (161)
T COG5353 13 LVIFLAIILSIALFFW-KSMKPYHEAE---EQAIDLATEETDLATADQFDLYNG 62 (161)
T ss_pred HHHHHHHHHHHHHHHh-HhcCccchhH---HHHHHHHhhcccceecceeEEecC
Confidence 3899999999999998 6677988764 333445555554444445543333
No 15
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=36.23 E-value=61 Score=30.77 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=34.0
Q ss_pred EEEeCcEEEecCCCCCCcCcHHHHHHHHHhhcccceeeeeeC
Q 015557 363 VKVTGEYLTFPGGGTQFKNGALHYIDFIQKVSLFHLSFYVCC 404 (404)
Q Consensus 363 Vk~~Gd~l~FPGGGTqF~~GA~~YId~I~emi~l~~~~~~~~ 404 (404)
+.+.||.|+-.|=|..|..-+.+|++.|+++..|.--..|||
T Consensus 122 ~lFtGDtlf~~g~gr~f~g~~~~~~~Sl~kl~~l~~~t~i~p 163 (251)
T PRK10241 122 YLFCGDTLFSGGCGRLFEGTASQMYQSLKKINALPDDTLICC 163 (251)
T ss_pred cEEEcCeeccCCcCCCCCCCHHHHHHHHHHHHcCCCCEEEEC
Confidence 488999985444477888789999999999888877777776
No 16
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=35.06 E-value=56 Score=22.49 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=20.1
Q ss_pred eCcEEEecCCCCCCcCc--HHHHHHHHHhhcc
Q 015557 366 TGEYLTFPGGGTQFKNG--ALHYIDFIQKVSL 395 (404)
Q Consensus 366 ~Gd~l~FPGGGTqF~~G--A~~YId~I~emi~ 395 (404)
.-+.+++|||+.....- ....++.|.+...
T Consensus 46 ~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (92)
T cd03128 46 DYDGLILPGGPGTPDDLAWDEALLALLREAAA 77 (92)
T ss_pred cCCEEEECCCCcchhhhccCHHHHHHHHHHHH
Confidence 45779999998877553 3556666655554
No 17
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=34.51 E-value=37 Score=31.00 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=22.6
Q ss_pred cEEEecCCCCCCcCcHH-----HHHHHHHhhcccceeeeeeC
Q 015557 368 EYLTFPGGGTQFKNGAL-----HYIDFIQKVSLFHLSFYVCC 404 (404)
Q Consensus 368 d~l~FPGGGTqF~~GA~-----~YId~I~emi~l~~~~~~~~ 404 (404)
+.|+||||+ .|..... .+++.|.+++.-+..+|--|
T Consensus 39 d~lilpGg~-~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC 79 (194)
T cd01750 39 DLIILPGSK-DTIQDLAWLRKRGLAEAIKNYARAGGPVLGIC 79 (194)
T ss_pred CEEEECCCc-chHHHHHHHHHcCHHHHHHHHHHCCCcEEEEC
Confidence 678999998 5543321 14566777776666666544
No 18
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=34.50 E-value=54 Score=23.71 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=21.5
Q ss_pred CcEEEecCCCCCCcCc--HHHHHHHHHhhcccceeeee
Q 015557 367 GEYLTFPGGGTQFKNG--ALHYIDFIQKVSLFHLSFYV 402 (404)
Q Consensus 367 Gd~l~FPGGGTqF~~G--A~~YId~I~emi~l~~~~~~ 402 (404)
-+.|++|||+..=+.- ....++.|.+...-+...+.
T Consensus 47 ~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 84 (115)
T cd01653 47 YDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILG 84 (115)
T ss_pred cCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEE
Confidence 4679999876443322 26677777777664444333
No 19
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=33.49 E-value=14 Score=28.64 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=0.0
Q ss_pred eehhhHHHHHHH
Q 015557 21 VTVVVFVGLCLV 32 (404)
Q Consensus 21 vTvVvFVaLCLV 32 (404)
.|||++|||.|+
T Consensus 3 Lt~vliVavLll 14 (75)
T PF02950_consen 3 LTCVLIVAVLLL 14 (75)
T ss_dssp ------------
T ss_pred cchHHHHHHHHH
Confidence 688999998875
No 20
>PF13665 DUF4150: Domain of unknown function (DUF4150)
Probab=32.09 E-value=23 Score=30.83 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=14.4
Q ss_pred CccccCCCCCCCCCCCCCC
Q 015557 320 PTCIVPLPEGYKRSIKWPK 338 (404)
Q Consensus 320 ~~CLVP~P~GYK~Pi~WPk 338 (404)
-.||.|+|.. +|||.|-
T Consensus 10 DVC~TP~~~~--vPIPYpn 26 (110)
T PF13665_consen 10 DVCKTPPGPP--VPIPYPN 26 (110)
T ss_pred cceeCCCCCC--ccCcccc
Confidence 4799999888 9999874
No 21
>KOG4075 consensus Cytochrome c oxidase, subunit IV/COX5b [Energy production and conversion]
Probab=31.92 E-value=34 Score=32.37 Aligned_cols=31 Identities=29% Similarity=0.259 Sum_probs=22.7
Q ss_pred cccccccceeehh--hHHHHH-HHHHhhhhccceec
Q 015557 12 RKSSGYCSTVTVV--VFVGLC-LVGVWMLMSSTVVP 44 (404)
Q Consensus 12 RksS~yCsTvTvV--vFVaLC-LVGvWMm~SSsV~P 44 (404)
++.+++--||.+| +|++|| +|++||..= |.|
T Consensus 93 ~~~~~ewKtv~g~~~~f~Gl~~~v~l~~~v~--vy~ 126 (167)
T KOG4075|consen 93 NRGSNEWKTVFGVAGFFLGLTISVILFGKVR--VYG 126 (167)
T ss_pred cCCCCcccchhhHHHHHHHHHHHHHHHHhhe--ecC
Confidence 4688898898854 566665 589999884 555
No 22
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=30.58 E-value=76 Score=30.00 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=32.9
Q ss_pred EEEeCcEEEecCCCCCCcCcHHHHHHHHHhhcccceeeeeeC
Q 015557 363 VKVTGEYLTFPGGGTQFKNGALHYIDFIQKVSLFHLSFYVCC 404 (404)
Q Consensus 363 Vk~~Gd~l~FPGGGTqF~~GA~~YId~I~emi~l~~~~~~~~ 404 (404)
+.+.||.|+..|-|-.|..-+.+|++.|.++..|.--.+|||
T Consensus 121 ~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~~l~~~~~i~p 162 (248)
T TIGR03413 121 ALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPDDTLVYC 162 (248)
T ss_pred EEEEcCccccCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEEC
Confidence 578899887666677787779999999998887766555555
No 23
>PRK06010 fliQ flagellar biosynthesis protein FliQ; Reviewed
Probab=29.54 E-value=37 Score=28.90 Aligned_cols=16 Identities=38% Similarity=0.397 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHhhhh
Q 015557 23 VVVFVGLCLVGVWMLM 38 (404)
Q Consensus 23 vVvFVaLCLVGvWMm~ 38 (404)
++||++|.+.|-||+.
T Consensus 56 iav~~~l~~~g~Wm~~ 71 (88)
T PRK06010 56 VAIFVTLLLTLPFMGA 71 (88)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6899999999999986
No 24
>PRK05700 fliQ flagellar biosynthesis protein FliQ; Validated
Probab=28.68 E-value=38 Score=28.78 Aligned_cols=16 Identities=38% Similarity=0.810 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHhhhh
Q 015557 23 VVVFVGLCLVGVWMLM 38 (404)
Q Consensus 23 vVvFVaLCLVGvWMm~ 38 (404)
++||++|.+.|-||+.
T Consensus 56 iav~~~l~~~g~Wm~~ 71 (89)
T PRK05700 56 LAVLLTLIIAGPWMLN 71 (89)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6799999999999985
No 25
>PLN02595 cytochrome c oxidase subunit VI protein
Probab=28.23 E-value=33 Score=30.19 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=13.5
Q ss_pred eeehhhHHHHHHH-HHhhhh
Q 015557 20 TVTVVVFVGLCLV-GVWMLM 38 (404)
Q Consensus 20 TvTvVvFVaLCLV-GvWMm~ 38 (404)
.||+++ |++|++ ++||+.
T Consensus 46 klS~~~-v~~c~~lnaY~l~ 64 (102)
T PLN02595 46 KITYLG-IASCTALAVYVLS 64 (102)
T ss_pred hhhHHH-hHHHHHHHHHHhh
Confidence 466665 899985 999865
No 26
>PF03779 SPW: SPW repeat; InterPro: IPR005530 A short repeat found in a small family of membrane-bound proteins. This repeat contains a conserved SPW motif in the first of two transmembrane helices [].
Probab=27.75 E-value=30 Score=26.47 Aligned_cols=16 Identities=31% Similarity=0.646 Sum_probs=13.4
Q ss_pred HHHHHHHhhhhcccee
Q 015557 28 GLCLVGVWMLMSSTVV 43 (404)
Q Consensus 28 aLCLVGvWMm~SSsV~ 43 (404)
+.+|+|+||+.|-.|+
T Consensus 4 ~~~llGlwli~SPWvl 19 (51)
T PF03779_consen 4 LNLLLGLWLIVSPWVL 19 (51)
T ss_pred HHHHHHHHHHHhHHHc
Confidence 4578999999998876
No 27
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=27.70 E-value=41 Score=28.62 Aligned_cols=17 Identities=29% Similarity=0.894 Sum_probs=14.1
Q ss_pred ehhhHHHHHHHH-Hhhhh
Q 015557 22 TVVVFVGLCLVG-VWMLM 38 (404)
Q Consensus 22 TvVvFVaLCLVG-vWMm~ 38 (404)
-++|||+|.|+| +|+++
T Consensus 33 ~~p~m~~lmllGL~WiVv 50 (87)
T PF06781_consen 33 YAPLMLGLMLLGLLWIVV 50 (87)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 478999999999 48775
No 28
>PF01313 Bac_export_3: Bacterial export proteins, family 3; InterPro: IPR002191 The fliL operon of Escherichia coli contains seven genes (including fliO, fliP, fliQ and fliR) involved in the biosynthesis and functioning of the flagellar organelle []. The fliO, fliP, fliQ and fliR genes encode highly hydrophobic polypeptides. The fliQ gene product, a small integral membrane protein that contains two putative transmembrane (TM) regions, is required for the assembly of the rivet at the earliest stage of flagellar biosynthesis. Proteins sharing an evolutionary relationship with FliQ have been found in a range of bacteria: these include Yop translocation protein S from Yersinia pestis []; surface antigen-presentation protein SpaQ from Salmonella typhimurium and Shigella flexneri []; and probable translocation protein Y4YM from Rhizobium sp. (strain NGR234) []. All of these members export proteins, that do not possess signal peptides, through the membrane. Although the proteins that these exporters move may be different, the exporters are thought to function in similar ways [].; GO: 0009306 protein secretion, 0016020 membrane
Probab=27.42 E-value=43 Score=27.71 Aligned_cols=16 Identities=50% Similarity=0.910 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHhhhh
Q 015557 23 VVVFVGLCLVGVWMLM 38 (404)
Q Consensus 23 vVvFVaLCLVGvWMm~ 38 (404)
++||++|.+.|=||+.
T Consensus 53 ~av~~~l~~~g~wm~~ 68 (76)
T PF01313_consen 53 LAVFLVLLLFGPWMLQ 68 (76)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6899999999999986
No 29
>TIGR01403 fliQ_rel_III type III secretion protein, HrpO family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FliQ. This model may not identify all type III secretion system FliQ homologs.
Probab=26.85 E-value=44 Score=28.03 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHhhhh
Q 015557 23 VVVFVGLCLVGVWMLM 38 (404)
Q Consensus 23 vVvFVaLCLVGvWMm~ 38 (404)
++||++|.+.|=||+.
T Consensus 52 iav~~~l~~~~pwm~~ 67 (81)
T TIGR01403 52 IAVFITLMLTAGWLGA 67 (81)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6799999999999985
No 30
>PLN02469 hydroxyacylglutathione hydrolase
Probab=26.83 E-value=94 Score=29.97 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=31.1
Q ss_pred ccEEEeCcEEEecCCCCCCcCcHHHHHHHHHhhcc-cceeeeeeC
Q 015557 361 NWVKVTGEYLTFPGGGTQFKNGALHYIDFIQKVSL-FHLSFYVCC 404 (404)
Q Consensus 361 NWVk~~Gd~l~FPGGGTqF~~GA~~YId~I~emi~-l~~~~~~~~ 404 (404)
.++.+.||.|+.-|-|-.|...+.++++.|.++|. |.-.-.|+|
T Consensus 128 ~~~lFtGDtLf~~g~Gr~~~g~~~~~~~Sl~~~l~~Lp~~t~vyp 172 (258)
T PLN02469 128 DPAVFTGDTLFIAGCGKFFEGTAEQMYQSLCVTLGSLPKPTQVYC 172 (258)
T ss_pred CCEEEecCcccCCCcCCCCCCCHHHHHHHHHHHHHcCCCCeEEEc
Confidence 57899999986655566666669999999987654 543334443
No 31
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=26.39 E-value=83 Score=27.49 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=20.2
Q ss_pred CcEEEecCCCCCC-cCcHHHHHHHHHhhcccc
Q 015557 367 GEYLTFPGGGTQF-KNGALHYIDFIQKVSLFH 397 (404)
Q Consensus 367 Gd~l~FPGGGTqF-~~GA~~YId~I~emi~l~ 397 (404)
=|.|++|||.-.- ..--...++.|+++.+-+
T Consensus 65 ~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~ 96 (187)
T cd03137 65 ADTVIVPGGPDVDGRPPPPALLAALRRAAARG 96 (187)
T ss_pred CCEEEECCCcccccccCCHHHHHHHHHHHhcC
Confidence 3899999874332 233456788888776543
No 32
>PRK12781 fliQ flagellar biosynthesis protein FliQ; Reviewed
Probab=26.28 E-value=45 Score=28.36 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHhhhh
Q 015557 23 VVVFVGLCLVGVWMLM 38 (404)
Q Consensus 23 vVvFVaLCLVGvWMm~ 38 (404)
++||++|.+.|-||+.
T Consensus 56 iav~~~l~~~~~wm~~ 71 (88)
T PRK12781 56 VVILIVMAVTGSFVGA 71 (88)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6799999999999986
No 33
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=26.26 E-value=27 Score=35.47 Aligned_cols=30 Identities=23% Similarity=0.685 Sum_probs=18.4
Q ss_pred Ccccccccce--------eehhhHHHHHHHHHhhhhccceec
Q 015557 11 GRKSSGYCST--------VTVVVFVGLCLVGVWMLMSSTVVP 44 (404)
Q Consensus 11 gRksS~yCsT--------vTvVvFVaLCLVGvWMm~SSsV~P 44 (404)
||.-|+++-. +.+++|+|+|| |||+ +++-|
T Consensus 38 GRT~~sW~~IllfYivFY~~la~lf~~~~---~~~~-~tidp 75 (300)
T KOG3927|consen 38 GRTGSSWAKILLFYIVFYGVLAALFAGCM---WFML-QTIDP 75 (300)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HhcCC
Confidence 4777777775 12344555555 8888 56655
No 34
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=26.15 E-value=72 Score=28.12 Aligned_cols=28 Identities=14% Similarity=0.353 Sum_probs=16.1
Q ss_pred cEEEecCCC-CCCcCcHHHHHHHHHhhcc
Q 015557 368 EYLTFPGGG-TQFKNGALHYIDFIQKVSL 395 (404)
Q Consensus 368 d~l~FPGGG-TqF~~GA~~YId~I~emi~ 395 (404)
|.|++|||. +.+.......+..|++...
T Consensus 78 D~liv~GG~~~~~~~~~~~~~~~l~~~~~ 106 (180)
T cd03169 78 DALVIPGGRAPEYLRLDEKVLAIVRHFAE 106 (180)
T ss_pred CEEEEcCCCChhhhccCHHHHHHHHHHHH
Confidence 789999983 3332222345555555554
No 35
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=25.93 E-value=34 Score=27.23 Aligned_cols=18 Identities=28% Similarity=0.674 Sum_probs=12.5
Q ss_pred ehhhHHHHHH-HHHhhhhc
Q 015557 22 TVVVFVGLCL-VGVWMLMS 39 (404)
Q Consensus 22 TvVvFVaLCL-VGvWMm~S 39 (404)
..++|++|.| ++|||+|.
T Consensus 39 ~~i~~~~~i~~l~v~~~~~ 57 (59)
T PF09889_consen 39 QYIFFGIFILFLAVWIFMT 57 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555 89999985
No 36
>TIGR01402 fliQ flagellar biosynthetic protein FliQ. This model describes FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participates in bacterial type III protein secretion systems.
Probab=25.47 E-value=47 Score=28.22 Aligned_cols=16 Identities=38% Similarity=0.991 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHhhhh
Q 015557 23 VVVFVGLCLVGVWMLM 38 (404)
Q Consensus 23 vVvFVaLCLVGvWMm~ 38 (404)
++||++|.+.|=||+.
T Consensus 56 iav~~~l~~~gpWm~~ 71 (88)
T TIGR01402 56 IAILLALALLGPWMLT 71 (88)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6799999999999985
No 37
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=25.17 E-value=32 Score=25.23 Aligned_cols=18 Identities=11% Similarity=0.399 Sum_probs=13.6
Q ss_pred ceeehhhHHHHHHHHHhh
Q 015557 19 STVTVVVFVGLCLVGVWM 36 (404)
Q Consensus 19 sTvTvVvFVaLCLVGvWM 36 (404)
+.+.|+++|.+|++|-|+
T Consensus 21 gl~il~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 21 GLIILLILVLLAIFAPFI 38 (56)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 346677888888888776
No 38
>PF14998 Ripply: Transcription Regulator
Probab=25.14 E-value=30 Score=29.73 Aligned_cols=18 Identities=28% Similarity=0.700 Sum_probs=14.1
Q ss_pred CCCCCCCCCCC--CCCcccc
Q 015557 325 PLPEGYKRSIK--WPKSRDR 342 (404)
Q Consensus 325 P~P~GYK~Pi~--WPkSRDk 342 (404)
..+.+|+-||| ||+||-+
T Consensus 35 ~~~~~FqHPVRL~wPkSk~~ 54 (87)
T PF14998_consen 35 KGLSGFQHPVRLYWPKSKCY 54 (87)
T ss_pred CcccccCCceEeeccchHHH
Confidence 34568999998 9999754
No 39
>PF14341 PilX_N: PilX N-terminal
Probab=25.13 E-value=31 Score=25.92 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=17.2
Q ss_pred eeehhhHHHHHHHHHhhhhccce
Q 015557 20 TVTVVVFVGLCLVGVWMLMSSTV 42 (404)
Q Consensus 20 TvTvVvFVaLCLVGvWMm~SSsV 42 (404)
.+++++++.|-|+|+++|.+++.
T Consensus 6 vvaLi~l~vltll~~~~~~~s~~ 28 (51)
T PF14341_consen 6 VVALIILLVLTLLGVAAMRSSTL 28 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667799999999987653
No 40
>PRK15350 type III secretion system protein SsaS; Provisional
Probab=25.05 E-value=50 Score=28.13 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHhhhh
Q 015557 23 VVVFVGLCLVGVWMLM 38 (404)
Q Consensus 23 vVvFVaLCLVGvWMm~ 38 (404)
|+||++|.+.|-||+.
T Consensus 56 iav~~~l~~~gpWm~~ 71 (88)
T PRK15350 56 LAIAITLMVSYPWLSG 71 (88)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6799999999999975
No 41
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=24.89 E-value=44 Score=26.47 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=28.8
Q ss_pred cEEEeCcEEEecCCCCCCcCc--------HHHHHHHHHhhcccc-eeeeee
Q 015557 362 WVKVTGEYLTFPGGGTQFKNG--------ALHYIDFIQKVSLFH-LSFYVC 403 (404)
Q Consensus 362 WVk~~Gd~l~FPGGGTqF~~G--------A~~YId~I~emi~l~-~~~~~~ 403 (404)
|+.+. ++|=|.|+.+..- ...+.+.|+++...+ +-+|+|
T Consensus 34 ~~~v~---v~~~g~gv~~~~~~~~~~~~~~~~~~~~l~~l~~~g~v~i~~C 81 (122)
T PF02635_consen 34 GHDVV---VFFHGDGVKLALKDQKPNPEGDPPLQELLKELKEAGGVKIYVC 81 (122)
T ss_dssp TSEEE---EEE-GGGGGGGBTTCHCGGCTSHCHHHHHHHHHHTTT-EEEEE
T ss_pred CCcEE---EEEEchHHHHHHhcccccccccccHHHHHHHHHhcCCcEEEEc
Confidence 77776 8888888877665 455777788888886 999999
No 42
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=24.70 E-value=44 Score=33.85 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=42.0
Q ss_pred ccccCCCCCchhhhhcCccccEEEeCcEEEecCCCCCCcCcHHHHHHHHHhhcccceee
Q 015557 342 RIWYHNVPHAKLAEVKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQKVSLFHLSF 400 (404)
Q Consensus 342 kiWy~NVPHtkLae~K~~QNWVk~~Gd~l~FPGGGTqF~~GA~~YId~I~emi~l~~~~ 400 (404)
-+.|+-=||.--...-+|=.||..- |=--+-+||+|++|+|..+. .+|+ +||
T Consensus 140 lvFYNsGp~aGaSq~HkHLQi~pmP-----fv~~~~~lpn~~dhFl~t~n-tePl-vsF 191 (298)
T COG4360 140 LVFYNSGPIAGASQDHKHLQIVPMP-----FVAFQDQLPNGKDHFLPTFN-TEPL-VSF 191 (298)
T ss_pred eEEecCCCCcCcCCCccceeEeecc-----ccccccccCchHhhcchhcc-cCCC-cch
Confidence 6888888998888888888999987 66668899999999998775 3444 444
No 43
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=24.14 E-value=54 Score=28.15 Aligned_cols=17 Identities=41% Similarity=1.058 Sum_probs=13.8
Q ss_pred ehhhHHHHHHHH-Hhhhh
Q 015557 22 TVVVFVGLCLVG-VWMLM 38 (404)
Q Consensus 22 TvVvFVaLCLVG-vWMm~ 38 (404)
-+++||+|.|+| +|+++
T Consensus 33 ~~~~m~glm~~GllWlvv 50 (87)
T PRK00159 33 YVVLMLGLMLIGLAWLVV 50 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 378999999999 48765
No 44
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=24.08 E-value=50 Score=29.84 Aligned_cols=25 Identities=16% Similarity=-0.011 Sum_probs=17.2
Q ss_pred ceeehhhHHHHHHHHHhhhhcccee
Q 015557 19 STVTVVVFVGLCLVGVWMLMSSTVV 43 (404)
Q Consensus 19 sTvTvVvFVaLCLVGvWMm~SSsV~ 43 (404)
..|.||+||++.+|+|..++.+-+.
T Consensus 80 iivgvi~~Vi~Iv~~Iv~~~Cc~c~ 104 (179)
T PF13908_consen 80 IIVGVICGVIAIVVLIVCFCCCCCC 104 (179)
T ss_pred eeeehhhHHHHHHHhHhhheecccc
Confidence 3445777888888888878765543
No 45
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=23.36 E-value=57 Score=32.93 Aligned_cols=46 Identities=39% Similarity=0.641 Sum_probs=29.5
Q ss_pred CCCCCCCCCCCcccccccCCCCCchhhhhcCcccc-EEEeCcEE-EecCCCCCCcC
Q 015557 328 EGYKRSIKWPKSRDRIWYHNVPHAKLAEVKGHQNW-VKVTGEYL-TFPGGGTQFKN 381 (404)
Q Consensus 328 ~GYK~Pi~WPkSRDkiWy~NVPHtkLae~K~~QNW-Vk~~Gd~l-~FPGGGTqF~~ 381 (404)
.||-+-|.=|.---.|= -..|-=+||| |++.|..| +||-|+|.|-+
T Consensus 155 tgYVrHVDNP~gDGRcI--------TcIYYlNqNWD~kv~Gg~Lri~pe~~~~~ad 202 (280)
T KOG3710|consen 155 TGYVRHVDNPHGDGRCI--------TCIYYLNQNWDVKVHGGILRIFPEGSTTFAD 202 (280)
T ss_pred ceeeEeccCCCCCceEE--------EEEEEcccCcceeeccceeEeccCCCCcccc
Confidence 46766665554333210 2234456899 78888776 79999999864
No 46
>PF14285 DUF4367: Domain of unknown function (DUF4367)
Probab=23.15 E-value=34 Score=29.29 Aligned_cols=22 Identities=14% Similarity=-0.004 Sum_probs=16.3
Q ss_pred eeehhhHHHHHHHHHhhhhccc
Q 015557 20 TVTVVVFVGLCLVGVWMLMSST 41 (404)
Q Consensus 20 TvTvVvFVaLCLVGvWMm~SSs 41 (404)
.+.+|+.++|+|+++++|++.-
T Consensus 4 r~a~~~~a~~i~~~~~~~t~~a 25 (168)
T PF14285_consen 4 RAAVAAAAVIILVFAASMTVQA 25 (168)
T ss_pred HHHHHHHHHHHHHHhHhEEehH
Confidence 4567778888888888887544
No 47
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=23.02 E-value=53 Score=27.50 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=16.3
Q ss_pred eeehhhHHHHHHHHHhhhh
Q 015557 20 TVTVVVFVGLCLVGVWMLM 38 (404)
Q Consensus 20 TvTvVvFVaLCLVGvWMm~ 38 (404)
--+|++||+||.+=+|.|-
T Consensus 53 QGsi~~fviLi~~Ya~~mn 71 (81)
T PF13937_consen 53 QGSIIVFVILIFVYAWRMN 71 (81)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3578999999999999884
No 48
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=22.96 E-value=49 Score=22.63 Aligned_cols=15 Identities=40% Similarity=0.709 Sum_probs=12.5
Q ss_pred eeehhhHHHHHHHHH
Q 015557 20 TVTVVVFVGLCLVGV 34 (404)
Q Consensus 20 TvTvVvFVaLCLVGv 34 (404)
..-||+|+-|.+||+
T Consensus 7 alivVLFILLiIvG~ 21 (24)
T PF09680_consen 7 ALIVVLFILLIIVGA 21 (24)
T ss_pred hhHHHHHHHHHHhcc
Confidence 456899999999996
No 49
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=22.77 E-value=57 Score=24.07 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=13.5
Q ss_pred eehhhHHHHHHHHHhhhh
Q 015557 21 VTVVVFVGLCLVGVWMLM 38 (404)
Q Consensus 21 vTvVvFVaLCLVGvWMm~ 38 (404)
.||++|+.++.+.+|.+.
T Consensus 14 ~~v~~~~~F~gi~~w~~~ 31 (49)
T PF05545_consen 14 GTVLFFVFFIGIVIWAYR 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 467777777777888875
No 50
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=22.72 E-value=1e+02 Score=26.67 Aligned_cols=30 Identities=30% Similarity=0.482 Sum_probs=19.5
Q ss_pred cEEEecCCC-CCCcCcHHHHHHHHHhhcccc
Q 015557 368 EYLTFPGGG-TQFKNGALHYIDFIQKVSLFH 397 (404)
Q Consensus 368 d~l~FPGGG-TqF~~GA~~YId~I~emi~l~ 397 (404)
|.|++|||- .........+++.|+++..-+
T Consensus 64 D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~ 94 (183)
T cd03139 64 DVLLVPGGGGTRALVNDPALLDFIRRQAARA 94 (183)
T ss_pred CEEEECCCcchhhhccCHHHHHHHHHhcccC
Confidence 789999873 222334466888888776543
No 51
>PLN02398 hydroxyacylglutathione hydrolase
Probab=22.63 E-value=1.3e+02 Score=30.63 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=34.1
Q ss_pred ccEEEeCcEEEecCCCCCCcCcHHHHHHHHHhhcccceeeeeeC
Q 015557 361 NWVKVTGEYLTFPGGGTQFKNGALHYIDFIQKVSLFHLSFYVCC 404 (404)
Q Consensus 361 NWVk~~Gd~l~FPGGGTqF~~GA~~YId~I~emi~l~~~~~~~~ 404 (404)
..+.+.||.|+-.|-|..|..-+.+|++.|+++..|.-...|+|
T Consensus 199 ~~vLFtGDtLf~~g~Gr~feg~~~~~~~SL~rL~~L~~~t~Vyp 242 (329)
T PLN02398 199 SGAIFTGDTLFSLSCGKLFEGTPEQMLSSLQKIISLPDDTNIYC 242 (329)
T ss_pred CCEEEECCCcCCCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEEC
Confidence 35678999986666688888889999999998887765544544
No 52
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.63 E-value=62 Score=26.01 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHhhhh
Q 015557 24 VVFVGLCLVGVWMLM 38 (404)
Q Consensus 24 VvFVaLCLVGvWMm~ 38 (404)
+++..||++|||-++
T Consensus 15 t~~~~l~fiavi~~a 29 (60)
T COG4736 15 TIAFTLFFIAVIYFA 29 (60)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567788999888766
No 53
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=22.40 E-value=48 Score=25.96 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.7
Q ss_pred cccccceeehhhHHHHHHHHHhhhh
Q 015557 14 SSGYCSTVTVVVFVGLCLVGVWMLM 38 (404)
Q Consensus 14 sS~yCsTvTvVvFVaLCLVGvWMm~ 38 (404)
.+.|..++-++|-++|..+|+||+.
T Consensus 42 ~~p~G~~ll~~vg~gli~~gi~~~~ 66 (73)
T PF06724_consen 42 EQPFGRWLLGAVGLGLIGYGIWQFV 66 (73)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 5678888889999999999999986
No 54
>PF03866 HAP: Hydrophobic abundant protein (HAP) ; InterPro: IPR005566 Expression of Hydrophobic Abundant protein is thought to be developmentally regulated and possibly involved in spherule cell wall formation [].
Probab=22.19 E-value=56 Score=30.54 Aligned_cols=14 Identities=57% Similarity=0.899 Sum_probs=11.8
Q ss_pred hHHHHHHHHHhhhh
Q 015557 25 VFVGLCLVGVWMLM 38 (404)
Q Consensus 25 vFVaLCLVGvWMm~ 38 (404)
|||||||..+-.+.
T Consensus 5 vfvalc~~avvala 18 (164)
T PF03866_consen 5 VFVALCLFAVVALA 18 (164)
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999887555
No 55
>PF12012 DUF3504: Domain of unknown function (DUF3504); InterPro: IPR021893 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 156 to 173 amino acids in length.
Probab=22.11 E-value=45 Score=29.99 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=20.2
Q ss_pred CccccCCCCCCCCCCCCCCcccccccCCCCCch
Q 015557 320 PTCIVPLPEGYKRSIKWPKSRDRIWYHNVPHAK 352 (404)
Q Consensus 320 ~~CLVP~P~GYK~Pi~WPkSRDkiWy~NVPHtk 352 (404)
+.|.-+...=|.+|.+=-.-.+.+||.++|-.+
T Consensus 127 ~~~~~~~~~FYl~P~~~~~~~~~~WY~~~PlG~ 159 (172)
T PF12012_consen 127 PSVRPRSDPFYLRPERSCSPDSPPWYSSQPLGK 159 (172)
T ss_pred hhhccCCCCeEeCccCccCCCCCCCeeccccCH
Confidence 344444455566665531123689999999765
No 56
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=22.10 E-value=54 Score=25.48 Aligned_cols=17 Identities=41% Similarity=0.833 Sum_probs=13.6
Q ss_pred eehhhHHHHHHHHHhhhh
Q 015557 21 VTVVVFVGLCLVGVWMLM 38 (404)
Q Consensus 21 vTvVvFVaLCLVGvWMm~ 38 (404)
|.++++|+.||+ .|+.+
T Consensus 7 iili~iv~~Cl~-lyl~a 23 (47)
T PRK10299 7 VVLVVVVLACLL-LWAQV 23 (47)
T ss_pred hHHHHHHHHHHH-HHHHH
Confidence 456778888999 99876
No 57
>TIGR02830 spore_III_AG stage III sporulation protein AG. CC A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AG.
Probab=22.00 E-value=91 Score=29.68 Aligned_cols=24 Identities=21% Similarity=0.420 Sum_probs=19.3
Q ss_pred ehhhHHHHHHHHHhhhhccceecc
Q 015557 22 TVVVFVGLCLVGVWMLMSSTVVPV 45 (404)
Q Consensus 22 TvVvFVaLCLVGvWMm~SSsV~P~ 45 (404)
++..|+.|+|+|+-+|.-|++++.
T Consensus 2 ~~~~l~il~l~GvlLli~s~~f~~ 25 (186)
T TIGR02830 2 KLTYLLVLLLIGLLLLIVSSFFSS 25 (186)
T ss_pred chHHHHHHHHHHHHHHHhhccccC
Confidence 355688889999999988888774
No 58
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=21.97 E-value=37 Score=23.47 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=17.4
Q ss_pred cccceeehhhHHHHHHHHHhhh
Q 015557 16 GYCSTVTVVVFVGLCLVGVWML 37 (404)
Q Consensus 16 ~yCsTvTvVvFVaLCLVGvWMm 37 (404)
.|.+-++.++.+.+||-|++|.
T Consensus 10 ~~~g~~~~~~ll~~~lTG~~l~ 31 (34)
T PF13172_consen 10 RWLGLIAAIFLLLLALTGALLN 31 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3556677788889999999885
No 59
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=21.47 E-value=31 Score=31.10 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=0.0
Q ss_pred eehhhHHHHHHHHHhhh
Q 015557 21 VTVVVFVGLCLVGVWML 37 (404)
Q Consensus 21 vTvVvFVaLCLVGvWMm 37 (404)
|-|||..+|.|+|.|-.
T Consensus 31 iL~VILgiLLliGCWYc 47 (118)
T PF14991_consen 31 ILIVILGILLLIGCWYC 47 (118)
T ss_dssp -----------------
T ss_pred eHHHHHHHHHHHhheee
Confidence 66889999999999964
No 60
>PF04294 VanW: VanW like protein; InterPro: IPR007391 Members of this family include vancomycin resistance protein W (VanW). Genes encoding members of this family have been found in vancomycin resistance gene clusters vanB [] and vanG []. The function of VanW is unknown.
Probab=21.09 E-value=59 Score=29.15 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=38.9
Q ss_pred cchhccCCCCCCCccccCCCCCCCCCCCCCCcccccccCCCCCchhhhhcCccccEEE
Q 015557 308 YEHRERHCPEEAPTCIVPLPEGYKRSIKWPKSRDRIWYHNVPHAKLAEVKGHQNWVKV 365 (404)
Q Consensus 308 yehRERHCP~e~~~CLVP~P~GYK~Pi~WPkSRDkiWy~NVPHtkLae~K~~QNWVk~ 365 (404)
++--|||.-..++.= .|.|+-.-|-|| +.|..|.+|-+++-+.......++|.+
T Consensus 75 l~ivER~~Hs~~v~y---~p~G~DAtV~~~-~~Dlkf~N~~~~~i~i~~~~~~~~l~v 128 (132)
T PF04294_consen 75 LEIVERHPHSYPVSY---VPPGRDATVAYG-YLDLKFRNPTDYPILIQASVDGGKLTV 128 (132)
T ss_pred CeeEEEcCCCCCCCC---CCCCceEEEecC-CcceEEEcCCCCeEEEEEEEeCCEEEE
Confidence 345788865433211 278999999999 699999999999987666555555544
No 61
>PF11660 DUF3262: Protein of unknown function (DUF3262); InterPro: IPR021676 This entry represents small, hydrophobic proteins that are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.91 E-value=48 Score=27.04 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=17.4
Q ss_pred eeehhhHHHHHHHHHhhhhccc
Q 015557 20 TVTVVVFVGLCLVGVWMLMSST 41 (404)
Q Consensus 20 TvTvVvFVaLCLVGvWMm~SSs 41 (404)
++..++|+.|.|-|+|.+.+.-
T Consensus 23 li~g~~~avllLW~aWa~~~~y 44 (76)
T PF11660_consen 23 LILGILFAVLLLWAAWALWSAY 44 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999998543
No 62
>PF14021 DUF4237: Protein of unknown function (DUF4237)
Probab=20.87 E-value=43 Score=28.27 Aligned_cols=8 Identities=88% Similarity=1.701 Sum_probs=7.4
Q ss_pred cCCCCCCc
Q 015557 373 PGGGTQFK 380 (404)
Q Consensus 373 PGGGTqF~ 380 (404)
||||+||.
T Consensus 65 pGGG~Qy~ 72 (90)
T PF14021_consen 65 PGGGTQYK 72 (90)
T ss_pred CCCeEEEE
Confidence 99999995
No 63
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=20.75 E-value=51 Score=33.10 Aligned_cols=26 Identities=27% Similarity=0.566 Sum_probs=19.9
Q ss_pred ccccccCCCCCchhhhhcCccccEEEeCcEEEecCCCCCCcCcHHHHHHH
Q 015557 340 RDRIWYHNVPHAKLAEVKGHQNWVKVTGEYLTFPGGGTQFKNGALHYIDF 389 (404)
Q Consensus 340 RDkiWy~NVPHtkLae~K~~QNWVk~~Gd~l~FPGGGTqF~~GA~~YId~ 389 (404)
.+-.||+..+.-+ |||||- |++||+.
T Consensus 99 L~~~WFar~~~iH--------------------P~GGSY----A~RYl~~ 124 (262)
T PF11884_consen 99 LPPRWFARSGLIH--------------------PGGGSY----ADRYLEK 124 (262)
T ss_pred CChHHHHhCCCcC--------------------CCCCcH----HHHHHHH
Confidence 3456888877655 999995 8899976
Done!