Query 015557
Match_columns 404
No_of_seqs 117 out of 232
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 14:41:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015557.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015557hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efz_A Metallo-beta-lactamase 47.6 18 0.0006 32.7 4.3 45 359-403 165-213 (298)
2 3s8f_C Cytochrome C oxidase po 46.2 7.1 0.00024 27.3 1.1 20 19-38 7-26 (34)
3 2pd2_A Hypothetical protein ST 37.9 9 0.00031 29.8 0.7 34 369-403 33-67 (108)
4 1l1s_A Hypothetical protein MT 34.2 11 0.00038 29.8 0.7 35 369-403 38-72 (113)
5 3cng_A Nudix hydrolase; struct 28.2 16 0.00053 30.9 0.6 31 367-397 64-95 (189)
6 2f93_B Sensory rhodopsin II tr 27.9 15 0.00051 31.7 0.5 28 20-48 65-92 (122)
7 1spf_A Pulmonary surfactant-as 27.8 23 0.0008 24.8 1.3 17 21-37 17-33 (35)
8 2c2n_A Malonyl COA-acyl carrie 27.2 40 0.0014 31.8 3.3 28 369-396 28-64 (339)
9 2lbo_A Microneme protein 3; ap 23.8 27 0.00091 30.3 1.3 46 278-328 62-121 (123)
10 3tzy_A Polyketide synthase PKS 22.6 36 0.0012 34.3 2.1 18 369-386 142-160 (491)
No 1
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei}
Probab=47.56 E-value=18 Score=32.74 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=33.2
Q ss_pred ccccEEEeCcEEEecCCC---CCCcC-cHHHHHHHHHhhcccceeeeee
Q 015557 359 HQNWVKVTGEYLTFPGGG---TQFKN-GALHYIDFIQKVSLFHLSFYVC 403 (404)
Q Consensus 359 ~QNWVk~~Gd~l~FPGGG---TqF~~-GA~~YId~I~emi~l~~~~~~~ 403 (404)
.+.|+.+.||.|+.++-| +-|+. -+..|++.|+++..|.-...|+
T Consensus 165 ~~~~~lftGD~l~~~~~g~~r~d~~~~d~~~~~~Sl~kl~~L~~~~~v~ 213 (298)
T 4efz_A 165 ARDAAAFVGDTLFMPDYGTARCDFPGGDARSLYRSIRKVLSLPPATRLY 213 (298)
T ss_dssp GCBCEEECCSSBCCTTTCBCCCCSTTCCHHHHHHHHHHHTTSCTTCEEE
T ss_pred CCceEEEEcCccccCCCCCccCCCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 456899999998877544 34765 4899999999988876553443
No 2
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=46.20 E-value=7.1 Score=27.29 Aligned_cols=20 Identities=15% Similarity=0.527 Sum_probs=17.2
Q ss_pred ceeehhhHHHHHHHHHhhhh
Q 015557 19 STVTVVVFVGLCLVGVWMLM 38 (404)
Q Consensus 19 sTvTvVvFVaLCLVGvWMm~ 38 (404)
-|.++|.+|++.++.+|.++
T Consensus 7 GTl~~V~ilg~~I~i~W~~v 26 (34)
T 3s8f_C 7 GALAVILVLTLTILVFWLGV 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ceehHHHHHHHHHHHHHHHH
Confidence 47788999999999999765
No 3
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=37.94 E-value=9 Score=29.85 Aligned_cols=34 Identities=6% Similarity=0.094 Sum_probs=25.6
Q ss_pred EEEecCCCC-CCcCcHHHHHHHHHhhcccceeeeee
Q 015557 369 YLTFPGGGT-QFKNGALHYIDFIQKVSLFHLSFYVC 403 (404)
Q Consensus 369 ~l~FPGGGT-qF~~GA~~YId~I~emi~l~~~~~~~ 403 (404)
.++|-|.|. +|..+. .+.+.|+.++..+..||+|
T Consensus 33 ~vv~~g~gv~~~~~~~-~~~~~i~~l~~~gV~~~~C 67 (108)
T 2pd2_A 33 EVVLHQSAIKALLKDS-DTRSIIEDLIKKNILIVGC 67 (108)
T ss_dssp EEEECGGGGGGGBTTC-TTHHHHHHHHHTTCEEEEE
T ss_pred EEEEcChHHHHHHcCc-hHHHHHHHHHHCcCEEEec
Confidence 467777776 444442 5778888888889999999
No 4
>1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein STRU initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.114.1.1
Probab=34.18 E-value=11 Score=29.79 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=25.2
Q ss_pred EEEecCCCCCCcCcHHHHHHHHHhhcccceeeeee
Q 015557 369 YLTFPGGGTQFKNGALHYIDFIQKVSLFHLSFYVC 403 (404)
Q Consensus 369 ~l~FPGGGTqF~~GA~~YId~I~emi~l~~~~~~~ 403 (404)
.++|-|.|..+-..-..+.+.|+.+...+..|++|
T Consensus 38 ~vv~~G~av~~~~~~~~~~~~i~~L~~~gV~~~~C 72 (113)
T 1l1s_A 38 EVVAYSMGVNVLRRDSEYSGDVSELTGQGVRFCAC 72 (113)
T ss_dssp EEEECGGGGGGGBTTCTTHHHHHHHHHTTCEEEEE
T ss_pred EEEEechHHHHHHcCChHHHHHHHHHHCCCEEEec
Confidence 46677777655332235778888888889999999
No 5
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=28.21 E-value=16 Score=30.94 Aligned_cols=31 Identities=10% Similarity=-0.090 Sum_probs=17.8
Q ss_pred CcEEEecCCCCCCcCc-HHHHHHHHHhhcccc
Q 015557 367 GEYLTFPGGGTQFKNG-ALHYIDFIQKVSLFH 397 (404)
Q Consensus 367 Gd~l~FPGGGTqF~~G-A~~YId~I~emi~l~ 397 (404)
..++.||||+...-.- ...=+.-|.+=++|.
T Consensus 64 ~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~ 95 (189)
T 3cng_A 64 RGKWTLPAGFMENNETLVQGAARETLEEANAR 95 (189)
T ss_dssp TTCEECSEEECCTTCCHHHHHHHHHHHHHCCC
T ss_pred CCeEECceeeccCCCCHHHHHHHHHHHHHCCc
Confidence 5689999988764332 233444555544443
No 6
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=27.92 E-value=15 Score=31.72 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=11.1
Q ss_pred eeehhhHHHHHHHHHhhhhccceecccCC
Q 015557 20 TVTVVVFVGLCLVGVWMLMSSTVVPVRDP 48 (404)
Q Consensus 20 TvTvVvFVaLCLVGvWMm~SSsV~P~qn~ 48 (404)
.+++|++++|.+||+||=- .++.|++.-
T Consensus 65 il~~v~lv~LgvvG~~lGR-~t~~pL~rL 92 (122)
T 2f93_B 65 GLIILLGINLGLVAATLGG-DTAASLSTL 92 (122)
T ss_dssp HHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHHHhh-HHHHHHHHH
Confidence 4567788889999999876 777898754
No 7
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=27.84 E-value=23 Score=24.84 Aligned_cols=17 Identities=41% Similarity=0.692 Sum_probs=12.9
Q ss_pred eehhhHHHHHHHHHhhh
Q 015557 21 VTVVVFVGLCLVGVWML 37 (404)
Q Consensus 21 vTvVvFVaLCLVGvWMm 37 (404)
+.|||.|-+-+||+-.|
T Consensus 17 VvVvVlvVvVivGaLLm 33 (35)
T 1spf_A 17 VVVVVLVVVVIVGALLM 33 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred EeeehhhHHHHHHHHHc
Confidence 34667777888999877
No 8
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase, lipid synthesis, mitochondrion transfer transferase; HET: AE4; 1.55A {Homo sapiens}
Probab=27.22 E-value=40 Score=31.85 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=20.0
Q ss_pred EEEecCCCCCCcC-c--------HHHHHHHHHhhccc
Q 015557 369 YLTFPGGGTQFKN-G--------ALHYIDFIQKVSLF 396 (404)
Q Consensus 369 ~l~FPGGGTqF~~-G--------A~~YId~I~emi~l 396 (404)
-|+|||-|.|+++ | +.+.++.+.+++++
T Consensus 28 afvF~GQGsQ~~gMg~~L~~~p~fr~~~~~~~~~lg~ 64 (339)
T 2c2n_A 28 VLLFPGQGSQVVGMGRGLLNYPRVRELYAAARRVLGY 64 (339)
T ss_dssp EEEECCTTCCCTTTTTTTTTSTTHHHHHHHHHHHHSS
T ss_pred EEEECCCCccHHHHHHHHHhChHHHHHHHHHHHHhCC
Confidence 4999999999986 3 34556666666543
No 9
>2lbo_A Microneme protein 3; apicomplexan, protozoa, cell adhesion, MICR microneme adhesive repeat; NMR {Eimeria tenella}
Probab=23.79 E-value=27 Score=30.35 Aligned_cols=46 Identities=17% Similarity=0.352 Sum_probs=28.8
Q ss_pred cccCCCCCCCCcccCCChHH-----------HhhhcccccccchhccCCC---CCCCccccCCCC
Q 015557 278 WKVCNATAGPDYIPCLDNWQ-----------AIRKLSSTKHYEHRERHCP---EEAPTCIVPLPE 328 (404)
Q Consensus 278 ~~lC~~~~~~DYiPClD~~~-----------a~k~l~~~~~yehRERHCP---~e~~~CLVP~P~ 328 (404)
-..|-.. --++|||+.... .|..|. -+-++|||+ +..+.=.||||.
T Consensus 62 ~~~CvDd-CGn~~~C~G~v~~~st~~~Tr~~~L~~~I----~~~~~~~Csp~~~~~~~~~~~~~~ 121 (123)
T 2lbo_A 62 GDGCVDD-CGSMTSCRGSVSGPSTSHLTRPSELQAVI----DSDKSNYCTDKSEQQPSQATPPPE 121 (123)
T ss_dssp CTTCCCS-SSSCCCCSCEECSCCCSEEECHHHHHHHH----HHHTTTSCCSCCCSSCCSSCCCSS
T ss_pred cCccccc-CCCccccCCCCCCCCCceecchHHHHHHH----HhhhhccCCchhhcCcccCCCCCC
Confidence 3567766 578999998742 221111 134789999 345666788875
No 10
>3tzy_A Polyketide synthase PKS13; acyltransferase, long fatty acid chain transferase, acyl CAR protein, transferase; HET: PLM; 2.20A {Mycobacterium tuberculosis} PDB: 3tzw_A 3tzx_A* 3tzz_A*
Probab=22.61 E-value=36 Score=34.32 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=14.8
Q ss_pred EEEecCCCCCCcC-cHHHH
Q 015557 369 YLTFPGGGTQFKN-GALHY 386 (404)
Q Consensus 369 ~l~FPGGGTqF~~-GA~~Y 386 (404)
-|+|||=|.|+++ |.+=|
T Consensus 142 vfvF~GQGsQ~~gMG~~L~ 160 (491)
T 3tzy_A 142 VWVLAGFGAQHRKMGKSLY 160 (491)
T ss_dssp EEEECCTTTCCTTTTHHHH
T ss_pred EEEECCCCcchhhhHHHHh
Confidence 5999999999998 65544
Done!