Your job contains 1 sequence.
>015559
MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR
VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH
EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNAL
SDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERA
RQEAAAKRAAEEAAKKEKQGEQQSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQEAI
AMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDGTKDAPSHSDMSQLLADQAFVSSI
LASLPGVDPEDPSVKDVLTSMQNQSEPQEKKDEDKVSKEEEEKK
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015559
(404 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2121269 - symbol:RPN10 "regulatory particle no... 989 1.2e-99 1
ZFIN|ZDB-GENE-050417-96 - symbol:psmd4b "proteasome (pros... 578 3.7e-70 2
UNIPROTKB|F1PRW0 - symbol:PSMD4 "Uncharacterized protein"... 575 1.2e-69 2
UNIPROTKB|Q58DA0 - symbol:PSMD4 "26S proteasome non-ATPas... 575 2.6e-69 2
UNIPROTKB|P55036 - symbol:PSMD4 "26S proteasome non-ATPas... 575 2.6e-69 2
UNIPROTKB|Q32YV9 - symbol:PSMD4 "Uncharacterized protein"... 575 2.6e-69 2
MGI|MGI:1201670 - symbol:Psmd4 "proteasome (prosome, macr... 575 1.8e-68 2
RGD|621109 - symbol:Psmd4 "proteasome (prosome, macropain... 575 1.8e-68 2
UNIPROTKB|Q5VWC4 - symbol:PSMD4 "26S proteasome non-ATPas... 575 2.3e-68 2
DICTYBASE|DDB_G0275775 - symbol:psmD4 "ubiquitin interact... 580 1.5e-66 3
ZFIN|ZDB-GENE-040625-104 - symbol:psmd4a "proteasome (pro... 576 1.1e-64 2
UNIPROTKB|O88321 - symbol:Psmd4 "Proteasome (Prosome, mac... 575 1.4e-62 2
CGD|CAL0005551 - symbol:RPN10 species:5476 "Candida albic... 600 1.3e-61 2
UNIPROTKB|D4A9C9 - symbol:Psmd4 "Protein Psmd4" species:1... 575 6.1e-60 2
UNIPROTKB|Q58D01 - symbol:PSMD4 "26S proteasome non-ATPas... 575 1.6e-59 2
FB|FBgn0015283 - symbol:Rpn10 "Regulatory particle non-AT... 602 1.2e-58 1
UNIPROTKB|A2A3N6 - symbol:PIPSL "Putative PIP5K1A and PSM... 492 1.4e-57 2
SGD|S000001243 - symbol:RPN10 "Non-ATPase base subunit of... 555 1.6e-57 2
UNIPROTKB|G4MS79 - symbol:MGG_04506 "26S proteasome non-A... 525 4.8e-54 2
POMBASE|SPAC637.10c - symbol:rpn10 "19S proteasome regula... 482 6.8e-49 2
WB|WBGene00004466 - symbol:rpn-10 species:6239 "Caenorhab... 443 1.4e-46 2
UNIPROTKB|A6PVX3 - symbol:PSMD4 "26S proteasome non-ATPas... 485 3.0e-46 1
UNIPROTKB|H9KYX1 - symbol:H9KYX1 "Uncharacterized protein... 405 8.5e-37 1
UNIPROTKB|H9KYX2 - symbol:H9KYX2 "Uncharacterized protein... 387 7.2e-36 1
UNIPROTKB|H0Y3Y9 - symbol:PSMD4 "26S proteasome non-ATPas... 85 2.9e-06 2
>TAIR|locus:2121269 [details] [associations]
symbol:RPN10 "regulatory particle non-ATPase 10"
species:3702 "Arabidopsis thaliana" [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008540
"proteasome regulatory particle, base subcomplex" evidence=ISS;IDA]
[GO:0000502 "proteasome complex" evidence=IDA;TAS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
[GO:0005634 "nucleus" evidence=TAS] [GO:0030163 "protein catabolic
process" evidence=TAS] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0009555 "pollen development"
evidence=IMP] [GO:0009651 "response to salt stress"
evidence=RCA;IMP] [GO:0009733 "response to auxin stimulus"
evidence=IMP] [GO:0009735 "response to cytokinin stimulus"
evidence=IEP;RCA;IMP] [GO:0009737 "response to abscisic acid
stimulus" evidence=IMP] [GO:0009744 "response to sucrose stimulus"
evidence=IMP] [GO:0010029 "regulation of seed germination"
evidence=IMP] [GO:0010150 "leaf senescence" evidence=IMP]
[GO:0048366 "leaf development" evidence=IMP] [GO:0048455 "stamen
formation" evidence=IMP] [GO:0048528 "post-embryonic root
development" evidence=IMP] [GO:0048767 "root hair elongation"
evidence=RCA;IMP] [GO:0016020 "membrane" evidence=IDA] [GO:0009408
"response to heat" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=RCA;IMP]
[GO:0043248 "proteasome assembly" evidence=RCA;IMP] [GO:0051788
"response to misfolded protein" evidence=RCA;IMP] [GO:0080129
"proteasome core complex assembly" evidence=RCA;IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006096 "glycolysis" evidence=RCA] [GO:0006623 "protein
targeting to vacuole" evidence=RCA] [GO:0006635 "fatty acid
beta-oxidation" evidence=RCA] [GO:0006833 "water transport"
evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
[GO:0007010 "cytoskeleton organization" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0009266 "response to
temperature stimulus" evidence=RCA] [GO:0009407 "toxin catabolic
process" evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
[GO:0010498 "proteasomal protein catabolic process" evidence=RCA]
[GO:0046686 "response to cadmium ion" evidence=RCA] [GO:0001653
"peptide receptor activity" evidence=IDA] InterPro:IPR002035
InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327 Pfam:PF02809
GO:GO:0005829 GO:GO:0009737 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0009735 GO:GO:0009733 GO:GO:0043161
GO:GO:0016020 GO:GO:0009555 GO:GO:0009651 GO:GO:0009744
GO:GO:0010150 GO:GO:0006974 GO:GO:0048767 GO:GO:0009408
GO:GO:0000502 GO:GO:0043248 GO:GO:0010029 KO:K03029
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 EMBL:AL035656
EMBL:AL161593 GO:GO:0051788 EMBL:AL035540 GO:GO:0048528
GO:GO:0001653 eggNOG:COG5148 EMBL:U33269 EMBL:AF360319
EMBL:AY113889 IPI:IPI00542443 PIR:T05691 RefSeq:NP_195575.1
UniGene:At.1553 ProteinModelPortal:P55034 SMR:P55034 IntAct:P55034
STRING:P55034 PaxDb:P55034 PRIDE:P55034 EnsemblPlants:AT4G38630.1
GeneID:830019 KEGG:ath:AT4G38630 TAIR:At4g38630
HOGENOM:HOG000165630 InParanoid:P55034 OMA:SDYQRNG PhylomeDB:P55034
ProtClustDB:CLSN2685445 Genevestigator:P55034 GermOnline:AT4G38630
GO:GO:0048455 PANTHER:PTHR10223 Uniprot:P55034
Length = 386
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 207/337 (61%), Positives = 239/337 (70%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLEAT+ICIDNSEWMRNGDY+PSR QAQTEA NL+CGAKTQ NPENTVG++TMAGKGVR
Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVR 60
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL TPTSDLGKILACMHGL++GGE+NL A IQ+AQLALKHRQNK Q+QRIIVF GSPIK+
Sbjct: 61 VLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKY 120
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDD-EGNTEKLEALLAAVNNNDSSHLVHVPPGPNA 179
EKK LE++G++LKKNSV+LDIVNFGEDD E +KLEALL AVNNND SH+VHVP G NA
Sbjct: 121 EKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSGANA 180
Query: 180 LSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSMXXXX 239
LSDVLLSTP+FTGD ++FGVDPN+DPELALALRVSM
Sbjct: 181 LSDVLLSTPVFTGD--EGASGYVSAAAAAAAAGGDFDFGVDPNIDPELALALRVSMEEER 238
Query: 240 XXXXXXXXXXXXXXXXXXXXXXXXSSSQDVTM--TDQDSVPASEADDKKKTTKHDEGLLQ 297
S+SQ+ TD+++ P E D LL
Sbjct: 239 ARQEAAAKKAADEAGQKDKDGDTASASQETVARTTDKNAEPMDE----------DSALLD 288
Query: 298 EAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSM 334
+AIAMS G D NMSE A++D +LALALQ+SM
Sbjct: 289 QAIAMSV------G-DVNMSEAADEDQDLALALQMSM 318
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 79/241 (32%), Positives = 119/241 (49%)
Query: 148 DEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTG--DGEXXXXXXXXXX 205
++ + EK + L A + +++ H+ P+ ++ L + T G+
Sbjct: 146 EDDDEEKPQKLEALLTAVNNNDGSHIVHVPSG-ANALSDVLLSTPVFTGDEGASGYVSAA 204
Query: 206 XXXXXXXXXYEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSS 265
++FGVDPN+DPELALALRVSM S+
Sbjct: 205 AAAAAAGGDFDFGVDPNIDPELALALRVSMEEERARQEAAAKKAADEAGQKDKDGDTASA 264
Query: 266 SQDVTMTDQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPE 325
SQ+ A D + D LL +AIAMS G D NMSE A++D +
Sbjct: 265 SQETV--------ARTTDKNAEPMDEDSALLDQAIAMSV------G-DVNMSEAADEDQD 309
Query: 326 LALALQLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQS 385
LALALQ+SM G + + + + LL +QAF+SS+L+SLPGVDP DP+VK++L S+ ++S
Sbjct: 310 LALALQMSMS-GEESSEATGAGNNLLGNQAFISSVLSSLPGVDPNDPAVKELLASLPDES 368
Query: 386 E 386
+
Sbjct: 369 K 369
>ZFIN|ZDB-GENE-050417-96 [details] [associations]
symbol:psmd4b "proteasome (prosome, macropain) 26S
subunit, non-ATPase, 4b" species:7955 "Danio rerio" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
InterPro:IPR002035 InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327
Pfam:PF02809 ZFIN:ZDB-GENE-050417-96 GO:GO:0000502 KO:K03029
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 eggNOG:COG5148
HOGENOM:HOG000165630 OMA:SDYQRNG PANTHER:PTHR10223
GeneTree:ENSGT00530000064050 HOVERGEN:HBG000425 EMBL:CU104697
EMBL:BC092825 IPI:IPI00495802 RefSeq:NP_001017624.1
UniGene:Dr.45739 SMR:Q561Y1 STRING:Q561Y1
Ensembl:ENSDART00000020654 GeneID:550287 KEGG:dre:550287 CTD:550287
InParanoid:Q561Y1 NextBio:20879548 Uniprot:Q561Y1
Length = 372
Score = 578 (208.5 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
Identities = 120/237 (50%), Positives = 162/237 (68%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N+IC +KT+ NPEN VG++TMA
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIICHSKTRSNPENNVGLITMANN-CE 59
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T D G+IL+ +H ++ G ++ GI+VA LALKHRQ K + RII FVGSP++
Sbjct: 60 VLTTLTPDTGRILSKLHAVQPRGVISFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPN 178
++K L + ++LKK V++DI+NFGE+ E NTEKL + +N + SHLV VPPGP+
Sbjct: 120 QEKDLVKMAKRLKKEKVSVDIINFGEE-EVNTEKLTVFVNTLNGKEGVGSHLVTVPPGPS 178
Query: 179 ALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 235
L+D LLS+PI G+G +EFGVDP+ DPELALALRVSM
Sbjct: 179 -LADALLSSPIMAGEG----------GTIMGLGASDFEFGVDPSADPELALALRVSM 224
Score = 151 (58.2 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
Identities = 48/175 (27%), Positives = 78/175 (44%)
Query: 215 YEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSQDVTMTDQ 274
+EFGVDP+ DPELALALRVSM + + +
Sbjct: 204 FEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAVASAADAGVSSPTADESENALLKM 263
Query: 275 DSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSM 334
+ PA D + T+ ++ + A+ MS G + SE + D A A
Sbjct: 264 STAPA--LPDFSRMTEDEQ--IAYALQMSM-----QGGEFGGSEAMDVDTAAAAA----E 310
Query: 335 QDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSM--QNQSEP 387
+ K+ D+ Q D F+ S+L +LPGVDP + ++++ + S+ QN+++P
Sbjct: 311 SEAPKEDEEDYDVMQ---DPEFLQSVLENLPGVDPNNEAIRNAMGSLASQNRTKP 362
Score = 40 (19.1 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 14/68 (20%), Positives = 26/68 (38%)
Query: 273 DQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQL 332
D D+ A+ + K + D ++Q+ + S G D N + LA +
Sbjct: 301 DVDTAAAAAESEAPKEDEEDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQNRT 360
Query: 333 SMQDGTKD 340
+G K+
Sbjct: 361 KPPEGKKE 368
>UNIPROTKB|F1PRW0 [details] [associations]
symbol:PSMD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IEA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR002035
InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327 Pfam:PF02809
KO:K03029 InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330
OMA:SDYQRNG PANTHER:PTHR10223 CTD:5710 GeneTree:ENSGT00530000064050
EMBL:AAEX03011056 RefSeq:NP_001130036.1 Ensembl:ENSCAFT00000019980
GeneID:100192385 KEGG:cfa:100192385 Uniprot:F1PRW0
Length = 377
Score = 575 (207.5 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
Identities = 119/237 (50%), Positives = 161/237 (67%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPN 178
+K L + ++LKK V +DI+NFGE+ E NTEKL A + +N D SHLV VPPGP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEE-EVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 235
L+D L+S+PI G+G +EFGVDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSM 224
Score = 149 (57.5 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
Identities = 48/175 (27%), Positives = 77/175 (44%)
Query: 215 YEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSQD---VTM 271
+EFGVDP+ DPELALALRVSM + D + M
Sbjct: 204 FEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATAGAEDSDDALLKM 263
Query: 272 T-DQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALAL 330
T Q S D T+ ++ + A+ MS G + +E A+ D A+
Sbjct: 264 TISQQEFGRSGLPDLSSMTEEEQ--IAYAMQMSL-----QGAEFGQAESADIDASSAM-- 314
Query: 331 QLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQS 385
D ++ A D ++ D F+ S+L +LPGVDP + ++++ + S+ +Q+
Sbjct: 315 -----DTSEPAKEEDDYD-VMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQA 363
>UNIPROTKB|Q58DA0 [details] [associations]
symbol:PSMD4 "26S proteasome non-ATPase regulatory subunit
4" species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=IEA] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR002035
InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327 Pfam:PF02809
KO:K03029 InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330
eggNOG:COG5148 OrthoDB:EOG4JQ3Z0 GO:GO:0022624 HOGENOM:HOG000165630
OMA:SDYQRNG PANTHER:PTHR10223 EMBL:BT021555 EMBL:BT021697
EMBL:BT021757 EMBL:BT026173 EMBL:BC119964 IPI:IPI00704307
RefSeq:NP_001013616.2 UniGene:Bt.104130 UniGene:Bt.12570
ProteinModelPortal:Q58DA0 SMR:Q58DA0 STRING:Q58DA0 PRIDE:Q58DA0
Ensembl:ENSBTAT00000008019 GeneID:282016 KEGG:bta:282016 CTD:5710
GeneTree:ENSGT00530000064050 HOVERGEN:HBG000425 InParanoid:Q58DA0
NextBio:20805881 ArrayExpress:Q58DA0 Uniprot:Q58DA0
Length = 382
Score = 575 (207.5 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 119/237 (50%), Positives = 161/237 (67%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPN 178
+K L + ++LKK V +DI+NFGE+ E NTEKL A + +N D SHLV VPPGP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEE-EVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 235
L+D L+S+PI G+G +EFGVDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSM 224
Score = 146 (56.5 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 48/175 (27%), Positives = 78/175 (44%)
Query: 215 YEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSQD---VTM 271
+EFGVDP+ DPELALALRVSM + D + M
Sbjct: 204 FEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATAGTEDSDDALLKM 263
Query: 272 T-DQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALAL 330
T Q + D T+ ++ + A+ MS G + +E A+ D A+
Sbjct: 264 TISQQEFGRTGLPDLSSMTEEEQ--IAYAMQMSL-----QGAEFGQAESADMDASSAM-- 314
Query: 331 QLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQS 385
+ TK+ + D+ Q D F+ S+L +LPGVDP + ++++ + S+ +Q+
Sbjct: 315 --DTSEPTKEEDDY-DVMQ---DPEFLQSVLENLPGVDPNNEAIRNAMGSLASQA 363
>UNIPROTKB|P55036 [details] [associations]
symbol:PSMD4 "26S proteasome non-ATPase regulatory subunit
4" species:9606 "Homo sapiens" [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0022624 "proteasome
accessory complex" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
processing and presentation of exogenous peptide antigen via MHC
class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] Reactome:REACT_13505 Reactome:REACT_578
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
Reactome:REACT_111217 InterPro:IPR002035 InterPro:IPR027040
PROSITE:PS50234 SMART:SM00327 Pfam:PF02809 GO:GO:0005829
Reactome:REACT_111102 Reactome:REACT_116125 Reactome:REACT_6900
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
GO:GO:0006977 GO:GO:0042981 GO:GO:0044281 GO:GO:0000082
GO:GO:0051436 KO:K03029 InterPro:IPR003903 SMART:SM00726
PROSITE:PS50330 GO:GO:0000216 GO:GO:0000209 GO:GO:0000084
EMBL:CH471121 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
Reactome:REACT_383 EMBL:AL592424 EMBL:AL391069 eggNOG:COG5148
OrthoDB:EOG4JQ3Z0 GO:GO:0022624 HOGENOM:HOG000165630
PANTHER:PTHR10223 CTD:5710 HOVERGEN:HBG000425 EMBL:U51007
EMBL:U24704 EMBL:AB033605 EMBL:BC002365 EMBL:BC072008 EMBL:U72664
IPI:IPI00022694 IPI:IPI00216247 PIR:S63671 RefSeq:NP_002801.1
UniGene:Hs.505059 PDB:1P9C PDB:1P9D PDB:1UEL PDB:1YX4 PDB:1YX5
PDB:1YX6 PDB:2KDE PDB:2KDF PDBsum:1P9C PDBsum:1P9D PDBsum:1UEL
PDBsum:1YX4 PDBsum:1YX5 PDBsum:1YX6 PDBsum:2KDE PDBsum:2KDF
ProteinModelPortal:P55036 SMR:P55036 IntAct:P55036 MINT:MINT-105366
STRING:P55036 PhosphoSite:P55036 DMDM:1709796 PaxDb:P55036
PRIDE:P55036 DNASU:5710 Ensembl:ENST00000368884 GeneID:5710
KEGG:hsa:5710 UCSC:uc001exl.3 GeneCards:GC01P151227 HGNC:HGNC:9561
HPA:CAB047300 HPA:HPA039252 MIM:601648 neXtProt:NX_P55036
PharmGKB:PA33907 PhylomeDB:P55036 ChiTaRS:PSMD4
EvolutionaryTrace:P55036 GenomeRNAi:5710 NextBio:22186
ArrayExpress:P55036 Bgee:P55036 CleanEx:HS_PSMD4
Genevestigator:P55036 GermOnline:ENSG00000159352 Uniprot:P55036
Length = 377
Score = 575 (207.5 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 119/237 (50%), Positives = 161/237 (67%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPN 178
+K L + ++LKK V +DI+NFGE+ E NTEKL A + +N D SHLV VPPGP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEE-EVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 235
L+D L+S+PI G+G +EFGVDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSM 224
Score = 146 (56.5 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 47/175 (26%), Positives = 77/175 (44%)
Query: 215 YEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSQD---VTM 271
+EFGVDP+ DPELALALRVSM + D + M
Sbjct: 204 FEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATTGTEDSDDALLKM 263
Query: 272 T-DQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALAL 330
T Q + D T+ ++ + A+ MS G + +E A+ D A+
Sbjct: 264 TISQQEFGRTGLPDLSSMTEEEQ--IAYAMQMSL-----QGAEFGQAESADIDASSAM-- 314
Query: 331 QLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQS 385
D ++ A D ++ D F+ S+L +LPGVDP + ++++ + S+ +Q+
Sbjct: 315 -----DTSEPAKEEDDYD-VMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQA 363
>UNIPROTKB|Q32YV9 [details] [associations]
symbol:PSMD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IEA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR002035
InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327 Pfam:PF02809
GO:GO:0000502 KO:K03029 InterPro:IPR003903 SMART:SM00726
PROSITE:PS50330 HOGENOM:HOG000165630 OMA:SDYQRNG PANTHER:PTHR10223
CTD:5710 GeneTree:ENSGT00530000064050 HOVERGEN:HBG000425
EMBL:CU138569 EMBL:AY704418 RefSeq:NP_001038000.1 UniGene:Ssc.49786
SMR:Q32YV9 STRING:Q32YV9 Ensembl:ENSSSCT00000007264 GeneID:733583
KEGG:ssc:733583 Uniprot:Q32YV9
Length = 377
Score = 575 (207.5 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 119/237 (50%), Positives = 161/237 (67%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPN 178
+K L + ++LKK V +DI+NFGE+ E NTEKL A + +N D SHLV VPPGP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEE-EVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 235
L+D L+S+PI G+G +EFGVDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSM 224
Score = 146 (56.5 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 47/175 (26%), Positives = 77/175 (44%)
Query: 215 YEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSQD---VTM 271
+EFGVDP+ DPELALALRVSM + D + M
Sbjct: 204 FEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATTGTEDSDDALLKM 263
Query: 272 T-DQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALAL 330
T Q + D T+ ++ + A+ MS G + +E A+ D A+
Sbjct: 264 TISQQEFGRTGLPDLSSMTEEEQ--IAYAMQMSL-----QGAEFGQAESADIDANSAM-- 314
Query: 331 QLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQS 385
D ++ A D ++ D F+ S+L +LPGVDP + ++++ + S+ +Q+
Sbjct: 315 -----DTSEPAKEEDDYD-VMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQA 363
>MGI|MGI:1201670 [details] [associations]
symbol:Psmd4 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 4" species:10090 "Mus musculus" [GO:0000502 "proteasome
complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0022624
"proteasome accessory complex" evidence=IDA] InterPro:IPR002035
InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327 MGI:MGI:1201670
Pfam:PF02809 GO:GO:0005737 KO:K03029 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 eggNOG:COG5148 OrthoDB:EOG4JQ3Z0
GO:GO:0022624 HOGENOM:HOG000165630 OMA:SDYQRNG PANTHER:PTHR10223
CTD:5710 GeneTree:ENSGT00530000064050 HOVERGEN:HBG000425
ChiTaRS:PSMD4 EMBL:AF013099 EMBL:AB029090 EMBL:AB029142
EMBL:AB029143 EMBL:AB029144 EMBL:AB029145 EMBL:AB029146
EMBL:AF175574 EMBL:BC009005 IPI:IPI00128564 IPI:IPI00230569
IPI:IPI00230570 IPI:IPI00345779 IPI:IPI00381291 PIR:JC6535
RefSeq:NP_032977.1 UniGene:Mm.2261 ProteinModelPortal:O35226
SMR:O35226 IntAct:O35226 MINT:MINT-2841145 STRING:O35226
PhosphoSite:O35226 REPRODUCTION-2DPAGE:IPI00345779 PaxDb:O35226
PRIDE:O35226 Ensembl:ENSMUST00000071664 Ensembl:ENSMUST00000107237
Ensembl:ENSMUST00000117355 GeneID:19185 KEGG:mmu:19185
UCSC:uc008qhr.1 UCSC:uc008qht.1 UCSC:uc008qhu.1 UCSC:uc008qhv.1
NextBio:295886 Bgee:O35226 Genevestigator:O35226
GermOnline:ENSMUSG00000005625 Uniprot:O35226
Length = 376
Score = 575 (207.5 bits), Expect = 1.8e-68, Sum P(2) = 1.8e-68
Identities = 119/237 (50%), Positives = 161/237 (67%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPN 178
+K L + ++LKK V +DI+NFGE+ E NTEKL A + +N D SHLV VPPGP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEE-EVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 235
L+D L+S+PI G+G +EFGVDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSM 224
Score = 138 (53.6 bits), Expect = 1.8e-68, Sum P(2) = 1.8e-68
Identities = 48/175 (27%), Positives = 73/175 (41%)
Query: 215 YEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSQD---VTM 271
+EFGVDP+ DPELALALRVSM + D + M
Sbjct: 204 FEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATPGTEDSDDALLKM 263
Query: 272 T-DQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALAL 330
T +Q D T+ + Q A AM S + T S+ + D +
Sbjct: 264 TINQQEFGRPGLPDLSSMTEEE----QIAYAMQM-----SLQGTEFSQESAD-------M 307
Query: 331 QLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQS 385
S T D D ++ D F+ S+L +LPGVDP + +++ V+ ++ +Q+
Sbjct: 308 DASSAMDTSDPVKEEDDYDVMQDPEFLQSVLENLPGVDPNNAAIRSVMGALASQA 362
Score = 48 (22.0 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 14/67 (20%), Positives = 30/67 (44%)
Query: 321 EDDPELALALQLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTS 380
ED + L + ++ Q+ + P D+S + ++ ++ SL G + S +S
Sbjct: 254 EDSDDALLKMTINQQEFGR--PGLPDLSSMTEEEQIAYAMQMSLQGTEFSQESADMDASS 311
Query: 381 MQNQSEP 387
+ S+P
Sbjct: 312 AMDTSDP 318
>RGD|621109 [details] [associations]
symbol:Psmd4 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 4" species:10116 "Rattus norvegicus" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0022624 "proteasome accessory
complex" evidence=ISO] [GO:0042044 "fluid transport" evidence=NAS]
InterPro:IPR002035 InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327
Pfam:PF02809 RGD:621109 GO:GO:0005737 GO:GO:0000502
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 PANTHER:PTHR10223
HOVERGEN:HBG000425 GO:GO:0042044 IPI:IPI00208471 UniGene:Rn.3830
HSSP:P55036 EMBL:AF175575 EMBL:BC060559 SMR:Q9ESH1 IntAct:Q9ESH1
STRING:Q9ESH1 UCSC:RGD:621109 InParanoid:Q9ESH1
Genevestigator:Q9ESH1 Uniprot:Q9ESH1
Length = 377
Score = 575 (207.5 bits), Expect = 1.8e-68, Sum P(2) = 1.8e-68
Identities = 119/237 (50%), Positives = 161/237 (67%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPN 178
+K L + ++LKK V +DI+NFGE+ E NTEKL A + +N D SHLV VPPGP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEE-EVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 235
L+D L+S+PI G+G +EFGVDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSM 224
Score = 138 (53.6 bits), Expect = 1.8e-68, Sum P(2) = 1.8e-68
Identities = 45/175 (25%), Positives = 74/175 (42%)
Query: 215 YEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSQD---VTM 271
+EFGVDP+ DPELALALRVSM + D + M
Sbjct: 204 FEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATPGTEDSDDALLKM 263
Query: 272 T-DQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALAL 330
T Q + D T+ ++ + A+ MS G + +E + D A+
Sbjct: 264 TISQQEFGRAGLPDLSSMTEEEQ--IAYAMQMSL-----QGAEFGQAESGDIDASSAM-- 314
Query: 331 QLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQS 385
T + D ++ D F+ S+L +LPGVDP + ++++ + S+ +Q+
Sbjct: 315 ------DTSEPVKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQA 363
>UNIPROTKB|Q5VWC4 [details] [associations]
symbol:PSMD4 "26S proteasome non-ATPase regulatory subunit
4" species:9606 "Homo sapiens" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=IEA]
InterPro:IPR002035 InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327
Pfam:PF02809 GO:GO:0000502 InterPro:IPR003903 SMART:SM00726
PROSITE:PS50330 EMBL:CH471121 EMBL:AL592424 EMBL:AL391069
OrthoDB:EOG4JQ3Z0 HOGENOM:HOG000165630 OMA:SDYQRNG
PANTHER:PTHR10223 HOVERGEN:HBG000425 IPI:IPI00216247
UniGene:Hs.505059 HGNC:HGNC:9561 ChiTaRS:PSMD4 SMR:Q5VWC4
STRING:Q5VWC4 Ensembl:ENST00000368881 Uniprot:Q5VWC4
Length = 380
Score = 575 (207.5 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
Identities = 119/237 (50%), Positives = 161/237 (67%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPN 178
+K L + ++LKK V +DI+NFGE+ E NTEKL A + +N D SHLV VPPGP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEE-EVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 235
L+D L+S+PI G+G +EFGVDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSM 224
Score = 137 (53.3 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
Identities = 48/178 (26%), Positives = 78/178 (43%)
Query: 215 YEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSS----SQD-- 268
+EFGVDP+ DPELALALRVSM + S D
Sbjct: 204 FEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATTGTEGERDSDDAL 263
Query: 269 VTMT-DQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELA 327
+ MT Q + D T+ ++ + A+ MS G + +E A+ D A
Sbjct: 264 LKMTISQQEFGRTGLPDLSSMTEEEQ--IAYAMQMSL-----QGAEFGQAESADIDASSA 316
Query: 328 LALQLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQS 385
+ D ++ A D ++ D F+ S+L +LPGVDP + ++++ + S+ +Q+
Sbjct: 317 M-------DTSEPAKEEDDYD-VMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQA 366
>DICTYBASE|DDB_G0275775 [details] [associations]
symbol:psmD4 "ubiquitin interacting motif (UIM)
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0000502
"proteasome complex" evidence=IEA;ISS] InterPro:IPR002035
InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327
dictyBase:DDB_G0275775 GO:GO:0005634 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0004175 GO:GO:0000502 GO:GO:0006511
KO:K03029 InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330
eggNOG:COG5148 OMA:SDYQRNG PANTHER:PTHR10223 RefSeq:XP_643477.1
STRING:Q553E0 EnsemblProtists:DDB0232981 GeneID:8620058
KEGG:ddi:DDB_G0275775 ProtClustDB:CLSZ2515584 Uniprot:Q553E0
Length = 349
Score = 580 (209.2 bits), Expect = 1.5e-66, Sum P(3) = 1.5e-66
Identities = 111/196 (56%), Positives = 148/196 (75%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
M LEAT++C+DNSEWMRNGD+ PSR +AQ +A NLIC +KTQ NPE+ V +M+MAGK
Sbjct: 1 MTLEATIVCLDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPE 60
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VLVT T +L KIL+ L+I G+++ + +Q+AQLAL+HRQN Q RII FVGSP+K
Sbjct: 61 VLVTLTQELSKILSGAQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKE 120
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNAL 180
K+ L + ++LKKN VA+DI+NFGE E N++KLEA + VNNND SHL+ VPPGP+ L
Sbjct: 121 TKEELIQLAKRLKKNGVAVDIINFGEVTE-NSDKLEAFINDVNNNDESHLLTVPPGPHIL 179
Query: 181 SDVLLSTPIF-TGDGE 195
SD++L +PI +G G+
Sbjct: 180 SDIILQSPIVESGSGQ 195
Score = 80 (33.2 bits), Expect = 1.5e-66, Sum P(3) = 1.5e-66
Identities = 29/117 (24%), Positives = 52/117 (44%)
Query: 284 DKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALAL---QLSMQDGTKD 340
++K + + G ++ P+ S D N + E LAL++ ++ +Q T +
Sbjct: 227 ERKAREEANGGSTNSGTTTTTAPT-ESNMDVNFEDDPELAEALALSMATDKMEVQSSTTN 285
Query: 341 A-----------PSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQSE 386
P+ S+ DQ F++S L SLPGVDP +K+ L ++ + E
Sbjct: 286 TDSQPPQQQQQPPTDDTSSEAFKDQDFLNSTLNSLPGVDPN--RIKNALENLSKKDE 340
Score = 57 (25.1 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 295 LLQEAIAMSSTPSYPSGRDTNMSEV--AEDDPELALALQLSMQD 336
+L + I S P SG SE A+ DP+LA+AL+LS+++
Sbjct: 178 ILSDIILQS--PIVESGSGQFGSEFINADTDPDLAMALKLSLEE 219
Score = 47 (21.6 bits), Expect = 1.5e-66, Sum P(3) = 1.5e-66
Identities = 9/20 (45%), Positives = 17/20 (85%)
Query: 216 EFGVDPNLDPELALALRVSM 235
EF ++ + DP+LA+AL++S+
Sbjct: 199 EF-INADTDPDLAMALKLSL 217
Score = 43 (20.2 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 216 EFGVDPNL--DPELALALRVSM 235
E +D N DPELA AL +SM
Sbjct: 251 ESNMDVNFEDDPELAEALALSM 272
>ZFIN|ZDB-GENE-040625-104 [details] [associations]
symbol:psmd4a "proteasome (prosome, macropain) 26S
subunit, non-ATPase, 4a" species:7955 "Danio rerio" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] InterPro:IPR002035 InterPro:IPR027040 PROSITE:PS50234
SMART:SM00327 Pfam:PF02809 ZFIN:ZDB-GENE-040625-104 KO:K03029
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330
HOGENOM:HOG000165630 PANTHER:PTHR10223 GeneTree:ENSGT00530000064050
HOVERGEN:HBG000425 EMBL:CU855694 EMBL:BC071482 IPI:IPI00501777
RefSeq:NP_001002112.1 UniGene:Dr.77193 SMR:Q6IQC6 STRING:Q6IQC6
Ensembl:ENSDART00000104063 GeneID:415202 KEGG:dre:415202 CTD:415202
InParanoid:Q6IQC6 NextBio:20818871 Uniprot:Q6IQC6
Length = 372
Score = 576 (207.8 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 119/237 (50%), Positives = 162/237 (68%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++TMA
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITMANN-CE 59
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T D G+IL+ +H ++ G+++ GI+VA LALKHRQ K + RI+ FVGSP++
Sbjct: 60 VLTTLTPDTGRILSKLHAVQPLGKISFCTGIRVAHLALKHRQGKNHKMRIVAFVGSPVED 119
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPN 178
+K L + ++LKK V +DI+NFGE+ E NTEKL A + +N + SHLV VPPGP+
Sbjct: 120 NEKDLVKMAKRLKKEKVNVDIINFGEE-EMNTEKLTAFVNTLNGKEGTGSHLVTVPPGPS 178
Query: 179 ALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 235
L+D LLS+PI G+G +EFGVDP+ DPELALALRVSM
Sbjct: 179 -LADALLSSPILAGEG----------GTMIGLGASDFEFGVDPSADPELALALRVSM 224
Score = 101 (40.6 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 35/120 (29%), Positives = 61/120 (50%)
Query: 280 SEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDT--NMSEVAEDDPELALALQLSMQDG 337
S A+ TT DE +EA+ S SG + S + E++ ++A A+Q+S+ G
Sbjct: 242 SAAEAGIPTTASDES--EEALLKMSASQPESGVAALPDFSSMTEEE-QIAYAMQMSLAGG 298
Query: 338 ----TKD--AP------SHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQS 385
+ D AP D ++ D F+ S+L +LPGVDP + ++++ + S+ +QS
Sbjct: 299 EFGESMDTGAPIDTAESKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQS 358
Score = 53 (23.7 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 10/14 (71%), Positives = 14/14 (100%)
Query: 323 DPELALALQLSMQD 336
DPELALAL++SM++
Sbjct: 213 DPELALALRVSMEE 226
>UNIPROTKB|O88321 [details] [associations]
symbol:Psmd4 "Proteasome (Prosome, macropain) 26S subunit,
non-ATPase, 4, isoform CRA_a" species:10116 "Rattus norvegicus"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IEA] InterPro:IPR002035 InterPro:IPR027040
PROSITE:PS50234 SMART:SM00327 Pfam:PF02809 RGD:621109 GO:GO:0000502
KO:K03029 InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330
EMBL:CH474015 eggNOG:COG5148 OrthoDB:EOG4JQ3Z0 HOGENOM:HOG000165630
OMA:SDYQRNG PANTHER:PTHR10223 CTD:5710 GeneTree:ENSGT00530000064050
HOVERGEN:HBG000425 EMBL:AC130969 EMBL:AB017188 IPI:IPI00208471
RefSeq:NP_112621.1 UniGene:Rn.3830 HSSP:P55036 SMR:O88321
IntAct:O88321 STRING:O88321 Ensembl:ENSRNOT00000028589 GeneID:83499
KEGG:rno:83499 InParanoid:O88321 NextBio:615908
Genevestigator:O88321 Uniprot:O88321
Length = 380
Score = 575 (207.5 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
Identities = 119/237 (50%), Positives = 161/237 (67%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPN 178
+K L + ++LKK V +DI+NFGE+ E NTEKL A + +N D SHLV VPPGP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEE-EVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 235
L+D L+S+PI G+G +EFGVDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSM 224
Score = 82 (33.9 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 338 TKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQS 385
T + D ++ D F+ S+L +LPGVDP + ++++ + S+ +Q+
Sbjct: 319 TSEPVKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQA 366
Score = 57 (25.1 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 323 DPELALALQLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQ 382
DPELALAL++SM++ + + + A A + I + PG + E S D L M
Sbjct: 213 DPELALALRVSMEEQRQR--QEEEARRAAAASAAEAGI--ATPGTEGERDS-DDALLKMT 267
Query: 383 -NQSE 386
+Q E
Sbjct: 268 ISQQE 272
Score = 41 (19.5 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 292 DEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQ--------DGTKDAPS 343
D+ LL+ I S + ++S + E++ ++A A+Q+S+Q G DA S
Sbjct: 260 DDALLKMTI---SQQEFGRAGLPDLSSMTEEE-QIAYAMQMSLQGAEFGQAESGDIDASS 315
Query: 344 HSDMSQLLADQ 354
D S+ + ++
Sbjct: 316 AMDTSEPVKEE 326
>CGD|CAL0005551 [details] [associations]
symbol:RPN10 species:5476 "Candida albicans" [GO:0031593
"polyubiquitin binding" evidence=IEA] [GO:0005198 "structural
molecule activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0008540
"proteasome regulatory particle, base subcomplex" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0042177 "negative regulation of protein catabolic
process" evidence=IEA] InterPro:IPR002035 InterPro:IPR027040
PROSITE:PS50234 SMART:SM00327 CGD:CAL0005551 KO:K03029
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 EMBL:AACQ01000107
EMBL:AACQ01000110 eggNOG:COG5148 PANTHER:PTHR10223
RefSeq:XP_714135.1 RefSeq:XP_714273.1 ProteinModelPortal:Q59X29
STRING:Q59X29 GeneID:3644080 GeneID:3644200 KEGG:cal:CaO19.11583
KEGG:cal:CaO19.4102 Uniprot:Q59X29
Length = 279
Score = 600 (216.3 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 125/236 (52%), Positives = 161/236 (68%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLEAT+I IDNSE+MRNGD+ SR++AQ A I K NPENTVG++ G G +
Sbjct: 1 MVLEATMIAIDNSEYMRNGDFLTSRYEAQLTATEFIFQNKINSNPENTVGLLAYGGSGPQ 60
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T+D GKILA +H +I GE N ++GIQVA LALKHRQNK QQQRII+FVGSPIK
Sbjct: 61 VLSTLTTDFGKILAGVHETKIQGENNFSSGIQVAALALKHRQNKVQQQRIIIFVGSPIKE 120
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEG-NTEKLEALLAAVNNNDSSHLVHVPPGPNA 179
+K LE + +K+KKN+VA+DI+NFGE EG NT KLE + +NN+D+SHLV + PGP
Sbjct: 121 SEKELEKLAKKMKKNNVAVDIINFGE--EGVNTAKLERFQSTINNHDNSHLVTISPGPRL 178
Query: 180 LSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 235
L +V+ S+PI DG + +DPN+DP+LA+ALR+S+
Sbjct: 179 LYEVVASSPILVEDGGFGAGVSGGDMDFFGGAGGAGDI-IDPNMDPDLAMALRLSL 233
Score = 48 (22.0 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 8/14 (57%), Positives = 14/14 (100%)
Query: 323 DPELALALQLSMQD 336
DP+LA+AL+LS+++
Sbjct: 222 DPDLAMALRLSLEE 235
>UNIPROTKB|D4A9C9 [details] [associations]
symbol:Psmd4 "Protein Psmd4" species:10116 "Rattus
norvegicus" [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=IEA] InterPro:IPR002035
InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327 Pfam:PF02809
RGD:621109 InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330
PANTHER:PTHR10223 EMBL:AC130969 IPI:IPI00561561
Ensembl:ENSRNOT00000047862 ArrayExpress:D4A9C9 Uniprot:D4A9C9
Length = 367
Score = 575 (207.5 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 119/237 (50%), Positives = 161/237 (67%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPN 178
+K L + ++LKK V +DI+NFGE+ E NTEKL A + +N D SHLV VPPGP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEE-EVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 235
L+D L+S+PI G+G +EFGVDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSM 224
Score = 57 (25.1 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 323 DPELALALQLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQ 382
DPELALAL++SM++ + + + A A + I + PG + E S D L M
Sbjct: 213 DPELALALRVSMEEQRQR--QEEEARRAAAASAAEAGI--ATPGTEGERDS-DDALLKMT 267
Query: 383 -NQSE 386
+Q E
Sbjct: 268 ISQQE 272
Score = 42 (19.8 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 20/81 (24%), Positives = 38/81 (46%)
Query: 292 DEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDGTKDAPSHS---DMS 348
D+ LL+ I S + ++S + E++ ++A A+Q+S+Q G + + S D S
Sbjct: 260 DDALLKMTI---SQQEFGRAGLPDLSSMTEEE-QIAYAMQMSLQ-GAEFGQAESGDIDAS 314
Query: 349 QLLADQAFVSSILASLPGVDP 369
+ V +S P + P
Sbjct: 315 SAMDTSEPVKVRASSDPPIQP 335
>UNIPROTKB|Q58D01 [details] [associations]
symbol:PSMD4 "26S proteasome non-ATPase regulatory subunit
4" species:9913 "Bos taurus" [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR002035 InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327
Pfam:PF02809 GO:GO:0000502 InterPro:IPR003903 SMART:SM00726
PROSITE:PS50330 HOGENOM:HOG000165630 PANTHER:PTHR10223
UniGene:Bt.104130 UniGene:Bt.12570 GeneTree:ENSGT00530000064050
HOVERGEN:HBG000425 EMBL:DAAA02007252 EMBL:BT021796 IPI:IPI00841753
SMR:Q58D01 STRING:Q58D01 Ensembl:ENSBTAT00000046341 Uniprot:Q58D01
Length = 316
Score = 575 (207.5 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 119/237 (50%), Positives = 161/237 (67%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPN 178
+K L + ++LKK V +DI+NFGE+ E NTEKL A + +N D SHLV VPPGP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEE-EVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 235
L+D L+S+PI G+G +EFGVDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSM 224
Score = 53 (23.7 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 10/14 (71%), Positives = 14/14 (100%)
Query: 323 DPELALALQLSMQD 336
DPELALAL++SM++
Sbjct: 213 DPELALALRVSMEE 226
Score = 43 (20.2 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 288 TTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDGTKDAPSHSDM 347
T D+ LL+ I+ +G ++S + E++ ++A A+Q+S+Q +DM
Sbjct: 253 TEDSDDALLKMTISQQEFGR--TGLP-DLSSMTEEE-QIAYAMQMSLQGAEFGQAESADM 308
>FB|FBgn0015283 [details] [associations]
symbol:Rpn10 "Regulatory particle non-ATPase 10" species:7227
"Drosophila melanogaster" [GO:0004175 "endopeptidase activity"
evidence=IDA;NAS] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=ISS;NAS] [GO:0000502 "proteasome complex"
evidence=NAS] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA;NAS] [GO:0005838 "proteasome regulatory
particle" evidence=ISS;IDA] [GO:0006508 "proteolysis"
evidence=ISS;IDA] [GO:0007059 "chromosome segregation"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR002035 InterPro:IPR027040 PROSITE:PS50234
SMART:SM00327 Pfam:PF02809 GO:GO:0007059 EMBL:AE014296
GO:GO:0006508 GO:GO:0006974 GO:GO:0004175 KO:K03029
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 eggNOG:COG5148
GO:GO:0008540 BRENDA:3.4.25.1 OMA:SDYQRNG PANTHER:PTHR10223
GeneTree:ENSGT00530000064050 EMBL:S79502 EMBL:AY089333 PIR:S66528
RefSeq:NP_524204.1 ProteinModelPortal:P55035 SMR:P55035
DIP:DIP-22777N IntAct:P55035 MINT:MINT-1578442 STRING:P55035
PaxDb:P55035 EnsemblMetazoa:FBtr0078368 EnsemblMetazoa:FBtr0333453
GeneID:40388 KEGG:dme:Dmel_CG7619 CTD:40388 FlyBase:FBgn0015283
InParanoid:P55035 OrthoDB:EOG43R239 PhylomeDB:P55035
GenomeRNAi:40388 NextBio:818530 Bgee:P55035 GermOnline:CG7619
Uniprot:P55035
Length = 396
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 157/403 (38%), Positives = 220/403 (54%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLE+T+IC DNS++ RNGDY P+R Q + NL+C K + NPEN VG+MT++ V
Sbjct: 1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VE 59
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T TSD G+I + MH ++ GE+NL GI++A L LKHRQ K + RI+VFVGSPI H
Sbjct: 60 VLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINH 119
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPN 178
E+ L ++LKK V +DIV+FG D N E L A + A+N D SHLV VP G +
Sbjct: 120 EEGDLVKQAKRLKKEKVNVDIVSFG-DHGNNNEILTAFINALNGKDGTGSHLVSVPRG-S 177
Query: 179 ALSDVLLSTPIFTG-DGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSMXX 237
LSD LLS+PI G DG +EFGVDPN DPELALALRVSM
Sbjct: 178 VLSDALLSSPIIQGEDG----------MGGAGLGGNVFEFGVDPNEDPELALALRVSMEE 227
Query: 238 XXXXXXXXXXXXXXXXXXXXXXXXXXSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQ 297
V+ + + ++ A+++ T +E +LQ
Sbjct: 228 QRQRQESEQRRANPDGAPPTGGDAGGGGG--VSGSGPGNEESAGAENEANT---EEAMLQ 282
Query: 298 EAIAMSS-TPSYPSGRDTNMSE---VA-------EDDPELALALQLSM-QDGTKDAPSH- 344
A+A+S+ TP NM+E +A +D P+ ++ Q + +AP
Sbjct: 283 RALALSTETPEDNLPDFANMTEEEQIAFAMQMSMQDAPDDSVTQQAKRPKTDEANAPMDV 342
Query: 345 -SDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQSE 386
D S+++ D AF+ S+L +LPGVDP+ +V+D + S+ +
Sbjct: 343 DEDYSEVIGDPAFLQSVLENLPGVDPQSEAVRDAVGSLNKDKD 385
>UNIPROTKB|A2A3N6 [details] [associations]
symbol:PIPSL "Putative PIP5K1A and PSMD4-like protein"
species:9606 "Homo sapiens" [GO:0016307 "phosphatidylinositol
phosphate kinase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR002035 InterPro:IPR002498 Pfam:PF01504
PROSITE:PS50234 PROSITE:PS51455 SMART:SM00327 GO:GO:0005737
PROSITE:PS50330 GO:GO:0046854 InterPro:IPR016034 SMART:SM00330
InterPro:IPR023610 PANTHER:PTHR23086 GO:GO:0016307 eggNOG:COG5148
EMBL:AL365510 IPI:IPI00419692 UniGene:Hs.149255
ProteinModelPortal:A2A3N6 SMR:A2A3N6 STRING:A2A3N6 PaxDb:A2A3N6
PRIDE:A2A3N6 UCSC:uc009xuj.2 GeneCards:GC10M095707 HGNC:HGNC:23733
neXtProt:NX_A2A3N6 InParanoid:A2A3N6 Genevestigator:A2A3N6
Uniprot:A2A3N6
Length = 862
Score = 492 (178.3 bits), Expect = 1.4e-57, Sum P(2) = 1.4e-57
Identities = 108/235 (45%), Positives = 145/235 (61%)
Query: 3 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVL 62
L+ +DNSE+M NGD+ P+R QAQ +A N +C +KT+ NPEN VG++T+ VL
Sbjct: 488 LQMLTTSVDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITL-DNDCEVL 546
Query: 63 VTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEK 122
T T D G+IL+ +H ++ G++ GI VA LALKHRQ + RII FVG+P++ +
Sbjct: 547 TTLTPDTGRILSKLHTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVEDNE 606
Query: 123 KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNAL 180
K L + + LKK V +DI+NFGE+ E NTEKL A + +N D SHLV VPPGP+ L
Sbjct: 607 KNLVKLAKCLKKEKVNVDIINFGEE-EVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPS-L 664
Query: 181 SDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 235
+D L+S PI G+G +EFGVDP+ DPELAL LRV M
Sbjct: 665 ADALISFPILAGEG----------GAMMGLGASDFEFGVDPSADPELALVLRVFM 709
Score = 132 (51.5 bits), Expect = 1.4e-57, Sum P(2) = 1.4e-57
Identities = 45/175 (25%), Positives = 76/175 (43%)
Query: 215 YEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSQD---VTM 271
+EFGVDP+ DPELAL LRV M + D + M
Sbjct: 689 FEFGVDPSADPELALVLRVFMEEQRQRQEEEARQAAAASAAEAGIATTGTEDSDDALLKM 748
Query: 272 T-DQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALAL 330
T Q + D T+ ++ + A+ MS G + ++E A+ D A+
Sbjct: 749 TISQQEFGHTGLPDLSSMTEEEKIVC--AMQMSL-----QGAEFGLAESADIDASSAM-- 799
Query: 331 QLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQS 385
D ++ A D ++ D F+ S+L +LPGVDP + ++++ + S+ +Q+
Sbjct: 800 -----DTSEPAKEEDDYD-VMQDPEFLQSVLENLPGVDPNNEAIRNAVGSLASQA 848
>SGD|S000001243 [details] [associations]
symbol:RPN10 "Non-ATPase base subunit of the regulatory
particle of the proteasome" species:4932 "Saccharomyces cerevisiae"
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA;IDA;IPI] [GO:0000502 "proteasome complex"
evidence=IEA;IMP] [GO:0005198 "structural molecule activity"
evidence=IMP] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA;IMP] [GO:0031593 "polyubiquitin binding"
evidence=IDA] InterPro:IPR002035 InterPro:IPR027040 PROSITE:PS50234
SMART:SM00327 SGD:S000001243 GO:GO:0005198 EMBL:BK006934
GO:GO:0006511 EMBL:U00030 GO:GO:0031593 RefSeq:NP_012070.3
GeneID:856607 KEGG:sce:YHR200W KO:K03029 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 eggNOG:COG5148 GO:GO:0008540 PDB:4B4T
PDBsum:4B4T HOGENOM:HOG000165630 PANTHER:PTHR10223
GeneTree:ENSGT00530000064050 OMA:HRQNKVQ OrthoDB:EOG4GXJX7
EMBL:D78022 EMBL:AY558289 PIR:S46677 RefSeq:NP_012072.3
ProteinModelPortal:P38886 SMR:P38886 DIP:DIP-2100N IntAct:P38886
MINT:MINT-557564 STRING:P38886 PaxDb:P38886 PeptideAtlas:P38886
EnsemblFungi:YHR200W GeneID:856609 KEGG:sce:YHR202W NextBio:982517
Genevestigator:P38886 GermOnline:YHR200W Uniprot:P38886
Length = 268
Score = 555 (200.4 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 115/237 (48%), Positives = 158/237 (66%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLEAT++ IDNSE+ RNGD+ +RF+AQ ++ I AK NPENTVG+++ AG R
Sbjct: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T++ GKILA +H +I G+L++A +Q+AQL LKHRQNK Q QRI+ FV SPI
Sbjct: 61 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD 120
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN--NDSSHLVHVPPGPN 178
+ L + + LKKN+VA+DI+NFGE ++ NTE L+ +AAVNN ++SHL+ V PGP
Sbjct: 121 SRDELIRLAKTLKKNNVAVDIINFGEIEQ-NTELLDEFIAAVNNPQEETSHLLTVTPGPR 179
Query: 179 ALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 235
L + + S+PI +G +FGVDP++DPELA+ALR+SM
Sbjct: 180 LLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSM 236
Score = 54 (24.1 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 10/14 (71%), Positives = 14/14 (100%)
Query: 323 DPELALALQLSMQD 336
DPELA+AL+LSM++
Sbjct: 225 DPELAMALRLSMEE 238
>UNIPROTKB|G4MS79 [details] [associations]
symbol:MGG_04506 "26S proteasome non-ATPase regulatory
subunit 4" species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002035 InterPro:IPR027040 PROSITE:PS50234
SMART:SM00327 GO:GO:0000502 KO:K03029 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 EMBL:CM001231 PANTHER:PTHR10223
RefSeq:XP_003710949.1 ProteinModelPortal:G4MS79
EnsemblFungi:MGG_04506T0 GeneID:2678171 KEGG:mgr:MGG_04506
Uniprot:G4MS79
Length = 294
Score = 525 (189.9 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
Identities = 118/238 (49%), Positives = 150/238 (63%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
M LEA +I +DNSE RNGDY P+RF AQ +A N++ T NPE++VG+M+M GK
Sbjct: 1 MPLEAVMIVVDNSESSRNGDYTPTRFDAQADAVNVLFQHVTNGNPESSVGLMSMGGKDPE 60
Query: 61 VLVTPTSDLGKILACMHGLE--IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPI 118
VLVT TSD GKIL +H + + G +LA IQVA LALKHRQN Q+ RI+ FV SP+
Sbjct: 61 VLVTLTSDQGKILEGLHRTKKKVSGSSHLATAIQVASLALKHRQNTTQRTRIVAFVCSPV 120
Query: 119 KHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND-SSHLVHVPPGP 177
E+K L + KLKKN+V +D V FG+ D+ ++KLEA A V NN+ +SHLV +PP
Sbjct: 121 SDEQKALVQLAGKLKKNNVTVDFVLFGDLDDDTSKKLEAFNAKVKNNEGNSHLVVIPPSG 180
Query: 178 NALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 235
N LSD L++TPIF GE EF DP DPELALALR+S+
Sbjct: 181 NLLSDQLIATPIF---GEGAGSSAAAGGGGGGGDFGDLEF--DPATDPELALALRMSL 233
Score = 51 (23.0 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
Identities = 9/14 (64%), Positives = 14/14 (100%)
Query: 323 DPELALALQLSMQD 336
DPELALAL++S+++
Sbjct: 222 DPELALALRMSLEE 235
>POMBASE|SPAC637.10c [details] [associations]
symbol:rpn10 "19S proteasome regulatory subunit Rpn10"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IC]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=ISO] [GO:0042177 "negative regulation of protein catabolic
process" evidence=IMP] [GO:0043130 "ubiquitin binding"
evidence=ISM] InterPro:IPR002035 InterPro:IPR027040 PROSITE:PS50234
SMART:SM00327 PomBase:SPAC637.10c GO:GO:0005829 GO:GO:0005634
GO:GO:0007346 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006511
GO:GO:0042177 KO:K03029 InterPro:IPR003903 PROSITE:PS50330
GO:GO:0043130 eggNOG:COG5148 GO:GO:0008540 HOGENOM:HOG000165630
PANTHER:PTHR10223 PIR:T39002 RefSeq:NP_594628.1 PDB:2X5N
PDBsum:2X5N ProteinModelPortal:O94444 IntAct:O94444 STRING:O94444
PRIDE:O94444 EnsemblFungi:SPAC637.10c.1 GeneID:2543682
KEGG:spo:SPAC637.10c OMA:HRQNKVQ OrthoDB:EOG4GXJX7 NextBio:20804688
Uniprot:O94444
Length = 243
Score = 482 (174.7 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
Identities = 96/192 (50%), Positives = 129/192 (67%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLEAT+I IDNSEWM NGDY P+RF+AQ + ++I K NPEN G+MT+ +
Sbjct: 1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ 60
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T D GK L+ MH L + G GIQ+AQLALKHR+NK Q+QRI+ FVGSPI
Sbjct: 61 VLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVE 120
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNAL 180
++K L + +++KKN+VA+DI++ GE N L+ + A N++DS HLV +PP P L
Sbjct: 121 DEKNLIRLAKRMKKNNVAIDIIHIGELQ--NESALQHFIDAANSSDSCHLVSIPPSPQLL 178
Query: 181 SDVLLSTPIFTG 192
SD++ +PI G
Sbjct: 179 SDLVNQSPIGQG 190
Score = 138 (53.6 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 35/85 (41%), Positives = 46/85 (54%)
Query: 151 NTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXX 210
N L+ + A N++DS HLV +PP P LSD++ +PI G G
Sbjct: 149 NESALQHFIDAANSSDSCHLVSIPPSPQLLSDLVNQSPI--GQG-------------VVA 193
Query: 211 XXXXYEFGVDPNLDPELALALRVSM 235
+E+GVDPNLD ELALAL +SM
Sbjct: 194 SQNQFEYGVDPNLDVELALALELSM 218
Score = 45 (20.9 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 323 DPELALALQLSMQD 336
D ELALAL+LSM +
Sbjct: 207 DVELALALELSMAE 220
>WB|WBGene00004466 [details] [associations]
symbol:rpn-10 species:6239 "Caenorhabditis elegans"
[GO:0030163 "protein catabolic process" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IGI;IMP] [GO:0042006 "masculinization of
hermaphroditic germ-line" evidence=IMP] [GO:0008340 "determination
of adult lifespan" evidence=IMP] [GO:0040027 "negative regulation
of vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IGI;IMP] InterPro:IPR002035 InterPro:IPR027040
SMART:SM00327 Pfam:PF02809 GO:GO:0008340 GO:GO:0016246
GO:GO:0007283 GO:GO:0006511 KO:K03029 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 GO:GO:0040027 EMBL:FO080112
GO:GO:0042006 eggNOG:COG5148 HOGENOM:HOG000165630 PANTHER:PTHR10223
GeneTree:ENSGT00530000064050 OMA:HRQNKVQ RefSeq:NP_492809.1
ProteinModelPortal:O61742 SMR:O61742 IntAct:O61742 MINT:MINT-210565
STRING:O61742 PaxDb:O61742 EnsemblMetazoa:B0205.3.1
EnsemblMetazoa:B0205.3.2 GeneID:172977 KEGG:cel:CELE_B0205.3
UCSC:B0205.3.1 CTD:172977 WormBase:B0205.3 InParanoid:O61742
NextBio:877763 Uniprot:O61742
Length = 346
Score = 443 (161.0 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 95/239 (39%), Positives = 146/239 (61%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MV E+T+IC+DNSE+MRNGD+ P+R Q+Q +A NL+ K + NPEN VG+++MA V+
Sbjct: 1 MVQESTMICVDNSEYMRNGDFQPTRLQSQQDAVNLVTQCKLRANPENAVGILSMANS-VQ 59
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL + +++ G+++ H +E G+ N AGI++A LALKHRQN+ + R+++F+GSP++
Sbjct: 60 VLSSLSTEQGRLMMKNHSIEPFGKCNFIAGIKIAHLALKHRQNRNHKMRVVLFIGSPLEE 119
Query: 121 -EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSS--HLVHVPPGP 177
E L I +K+KK V D++ FGE++ EK + +N + S L+ VP G
Sbjct: 120 IEMNELVKIAKKMKKEKVLCDVIMFGENESDGHEKFSTFVDTLNGKEGSGSSLIVVPQG- 178
Query: 178 NALSDVLLSTPIFTG-DGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 235
++L+D LL + + DG+ FG+D DP+LALALRVSM
Sbjct: 179 SSLTDALLQSSVCKNEDGQAAFGGGGNGMDNA--------FGMDVENDPDLALALRVSM 229
Score = 62 (26.9 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 310 SGRDTNMSEVAEDDPELALALQLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDP 369
+G D E+DP+LALAL++SM++ + + + AD + + A+ V
Sbjct: 205 NGMDNAFGMDVENDPDLALALRVSMEEERARQAAAAAANGGAADSGADAEVAAAAAAVPL 264
Query: 370 ED 371
E+
Sbjct: 265 EE 266
Score = 39 (18.8 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 313 DTNMSEVAEDDPELALALQLSMQDGTKDAPSHSDMSQ 349
+ +M + E+ +L AL+LSMQ+ +AP+ Q
Sbjct: 266 EMDMGAMTEEQ-QLEWALRLSMQE---NAPAEQPQVQ 298
>UNIPROTKB|A6PVX3 [details] [associations]
symbol:PSMD4 "26S proteasome non-ATPase regulatory subunit
4" species:9606 "Homo sapiens" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=IEA]
InterPro:IPR002035 InterPro:IPR027040 SMART:SM00327 GO:GO:0005737
GO:GO:0000502 EMBL:AL592424 EMBL:AL391069 HOGENOM:HOG000165630
PANTHER:PTHR10223 HOVERGEN:HBG000425 UniGene:Hs.505059
HGNC:HGNC:9561 ChiTaRS:PSMD4 IPI:IPI00853509 STRING:A6PVX3
Ensembl:ENST00000437736 Uniprot:A6PVX3
Length = 203
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 103/216 (47%), Positives = 140/216 (64%)
Query: 16 MRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILAC 75
MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A VL T T D G+IL+
Sbjct: 1 MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSK 59
Query: 76 MHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKN 135
+H ++ G++ GI+VA LALKHRQ K + RII FVGSP++ +K L + ++LKK
Sbjct: 60 LHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKE 119
Query: 136 SVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNALSDVLLSTPIFTGD 193
V +DI+NFGE+ E NTEKL A + +N D SHLV VPPGP+ L+D L+S+PI G+
Sbjct: 120 KVNVDIINFGEE-EVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPS-LADALISSPILAGE 177
Query: 194 GEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELAL 229
G +EFGVDP+ DPELAL
Sbjct: 178 G----------GAMLGLGASDFEFGVDPSADPELAL 203
>UNIPROTKB|H9KYX1 [details] [associations]
symbol:H9KYX1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0060326 "cell chemotaxis" evidence=IEA]
[GO:0072661 "protein targeting to plasma membrane" evidence=IEA]
[GO:0097178 "ruffle assembly" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0008654 "phospholipid
biosynthetic process" evidence=IEA] [GO:0010761 "fibroblast
migration" evidence=IEA] [GO:0016308
"1-phosphatidylinositol-4-phosphate 5-kinase activity"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0019900
"kinase binding" evidence=IEA] [GO:0030027 "lamellipodium"
evidence=IEA] [GO:0031532 "actin cytoskeleton reorganization"
evidence=IEA] [GO:0032587 "ruffle membrane" evidence=IEA]
[GO:0032863 "activation of Rac GTPase activity" evidence=IEA]
[GO:0048041 "focal adhesion assembly" evidence=IEA]
InterPro:IPR002035 InterPro:IPR002498 Pfam:PF01504 PROSITE:PS51455
SMART:SM00327 Pfam:PF02809 InterPro:IPR003903 SMART:SM00726
PROSITE:PS50330 GO:GO:0046854 InterPro:IPR016034 SMART:SM00330
InterPro:IPR023610 PANTHER:PTHR23086 GeneTree:ENSGT00690000101870
GO:GO:0016307 EMBL:AADN02010480 EMBL:AADN02010481 EMBL:AADN02010482
EMBL:AADN02010483 Ensembl:ENSGALT00000001176 OMA:MADNCEV
Uniprot:H9KYX1
Length = 866
Score = 405 (147.6 bits), Expect = 8.5e-37, P = 8.5e-37
Identities = 111/313 (35%), Positives = 156/313 (49%)
Query: 24 SRFQAQTEAANLICGAKT-QLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIG 82
S Q A N + ++T Q + E G++T+ VL T T D G+IL+ +H ++
Sbjct: 513 SSLQRLESALNRVPLSRTPQHSREPMRGLITLGHSNCEVLTTLTPDTGRILSKLHTVQPK 572
Query: 83 GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIV 142
G++ GI+VA LALKHRQ K + RII FVGSP++ +K L + ++LKK V +DI+
Sbjct: 573 GKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDII 632
Query: 143 NFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNALSDVLLSTPIFTGDGEXXXXX 200
NFGE+ E NT+KL A + +N D SHLV VPPGP+ L+D L+S+PI G+G
Sbjct: 633 NFGEE-EANTDKLTAFINTLNGKDGTGSHLVTVPPGPS-LADALISSPILAGEG------ 684
Query: 201 XXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXX 260
+EFGVDP+ DPELALALRVSM
Sbjct: 685 ----GAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIA 740
Query: 261 XXXSSSQD-----VTMTDQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTN 315
D +T+T Q+ A D + T +E + A+ MS G +
Sbjct: 741 ATGGDDSDDALLKMTITQQEFGRAGLPDLSRMT---EEEQIAYAMQMSL-----QGAEFA 792
Query: 316 MSEVAEDDPELAL 328
+E AE D A+
Sbjct: 793 QAEAAEVDSSTAM 805
Score = 155 (59.6 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 51/179 (28%), Positives = 80/179 (44%)
Query: 215 YEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSQD-----V 269
+EFGVDP+ DPELALALRVSM D +
Sbjct: 695 FEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIAATGGDDSDDALLKM 754
Query: 270 TMTDQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALA 329
T+T Q+ A D + T +E + A+ MS G + +E AE D A+
Sbjct: 755 TITQQEFGRAGLPDLSRMT---EEEQIAYAMQMSL-----QGAEFAQAEAAEVDSSTAM- 805
Query: 330 LQLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQSEPQ 388
+ TK+ + D+ Q D F+ S+L +LPGVDP + ++++ + S+ +Q+ +
Sbjct: 806 ---DTSEPTKEEDDY-DVMQ---DPEFLQSVLENLPGVDPNNEAIRNAMGSLASQASKE 857
>UNIPROTKB|H9KYX2 [details] [associations]
symbol:H9KYX2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0008654 "phospholipid
biosynthetic process" evidence=IEA] [GO:0010761 "fibroblast
migration" evidence=IEA] [GO:0016308
"1-phosphatidylinositol-4-phosphate 5-kinase activity"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0019900
"kinase binding" evidence=IEA] [GO:0030027 "lamellipodium"
evidence=IEA] [GO:0031532 "actin cytoskeleton reorganization"
evidence=IEA] [GO:0032587 "ruffle membrane" evidence=IEA]
[GO:0032863 "activation of Rac GTPase activity" evidence=IEA]
[GO:0048041 "focal adhesion assembly" evidence=IEA] [GO:0060326
"cell chemotaxis" evidence=IEA] [GO:0072661 "protein targeting to
plasma membrane" evidence=IEA] [GO:0097178 "ruffle assembly"
evidence=IEA] InterPro:IPR027040 Pfam:PF02809 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 GeneTree:ENSGT00690000101870
PANTHER:PTHR10223 EMBL:AADN02010480 EMBL:AADN02010481
EMBL:AADN02010482 EMBL:AADN02010483 Ensembl:ENSGALT00000001187
Uniprot:H9KYX2
Length = 318
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 102/275 (37%), Positives = 140/275 (50%)
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++
Sbjct: 4 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 63
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPN 178
+K L + ++LKK V +DI+NFGE+ E NT+KL A + +N D SHLV VPPGP+
Sbjct: 64 NEKDLVKLAKRLKKEKVNVDIINFGEE-EANTDKLTAFINTLNGKDGTGSHLVTVPPGPS 122
Query: 179 ALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSMXXX 238
L+D L+S+PI G+G +EFGVDP+ DPELALALRVSM
Sbjct: 123 -LADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSMEEQ 171
Query: 239 XXXXXXXXXXXXXXXXXXXXXXXXXSSSQD-----VTMTDQDSVPASEADDKKKTTKHDE 293
D +T+T Q+ A D + T +E
Sbjct: 172 RQRQEEEARRAAAASAAEAGIAATGGDDSDDALLKMTITQQEFGRAGLPDLSRMT---EE 228
Query: 294 GLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELAL 328
+ A+ MS G + +E AE D A+
Sbjct: 229 EQIAYAMQMSL-----QGAEFAQAEAAEVDSSTAM 258
Score = 155 (59.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 51/179 (28%), Positives = 80/179 (44%)
Query: 215 YEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSQD-----V 269
+EFGVDP+ DPELALALRVSM D +
Sbjct: 148 FEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIAATGGDDSDDALLKM 207
Query: 270 TMTDQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALA 329
T+T Q+ A D + T +E + A+ MS G + +E AE D A+
Sbjct: 208 TITQQEFGRAGLPDLSRMT---EEEQIAYAMQMSL-----QGAEFAQAEAAEVDSSTAM- 258
Query: 330 LQLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQSEPQ 388
+ TK+ + D+ Q D F+ S+L +LPGVDP + ++++ + S+ +Q+ +
Sbjct: 259 ---DTSEPTKEEDDY-DVMQ---DPEFLQSVLENLPGVDPNNEAIRNAMGSLASQASKE 310
>UNIPROTKB|H0Y3Y9 [details] [associations]
symbol:PSMD4 "26S proteasome non-ATPase regulatory subunit
4" species:9606 "Homo sapiens" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=IEA]
InterPro:IPR027040 Pfam:PF02809 InterPro:IPR003903 SMART:SM00726
PROSITE:PS50330 EMBL:AL592424 EMBL:AL391069 PANTHER:PTHR10223
HGNC:HGNC:9561 ChiTaRS:PSMD4 ProteinModelPortal:H0Y3Y9 PRIDE:H0Y3Y9
Ensembl:ENST00000445776 Bgee:H0Y3Y9 Uniprot:H0Y3Y9
Length = 193
Score = 85 (35.0 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 115 GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147
GSP++ +K L + ++LKK V +DI+NFGE+
Sbjct: 2 GSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEE 34
Score = 85 (35.0 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 297 QEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDGTKDAPSHSDMSQLLADQAF 356
+E IA + S G + +E A+ D A+ D ++ A D ++ D F
Sbjct: 100 EEQIAYAMQMSL-QGAEFGQAESADIDASSAM-------DTSEPAKEEDDYD-VMQDPEF 150
Query: 357 VSSILASLPGVDPEDPSVKDVLTSMQNQS 385
+ S+L +LPGVDP + ++++ + S+ +Q+
Sbjct: 151 LQSVLENLPGVDPNNEAIRNAMGSLASQA 179
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.128 0.354 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 404 341 0.00095 116 3 11 23 0.48 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 602 (64 KB)
Total size of DFA: 197 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.63u 0.11s 29.74t Elapsed: 00:00:01
Total cpu time: 29.63u 0.11s 29.74t Elapsed: 00:00:02
Start: Sat May 11 08:10:54 2013 End: Sat May 11 08:10:56 2013