Query 015559
Match_columns 404
No_of_seqs 239 out of 505
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 07:26:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2884 26S proteasome regulat 100.0 2.8E-85 6.1E-90 612.3 24.5 240 1-249 1-241 (259)
2 COG5148 RPN10 26S proteasome r 100.0 6.1E-70 1.3E-74 500.7 23.4 233 1-250 1-233 (243)
3 cd01452 VWA_26S_proteasome_sub 100.0 1.9E-56 4E-61 414.7 23.7 187 1-188 1-187 (187)
4 PF04056 Ssl1: Ssl1-like; Int 100.0 2.9E-38 6.2E-43 294.5 15.3 169 9-187 1-172 (193)
5 KOG2807 RNA polymerase II tran 100.0 5.4E-31 1.2E-35 258.6 13.9 174 3-187 60-235 (378)
6 cd01453 vWA_transcription_fact 100.0 1.7E-29 3.7E-34 231.8 19.5 173 3-185 3-176 (183)
7 COG5151 SSL1 RNA polymerase II 99.9 2.1E-26 4.5E-31 225.4 13.6 179 3-189 87-268 (421)
8 PRK13685 hypothetical protein; 99.8 1.2E-18 2.6E-23 173.1 19.9 161 5-172 90-273 (326)
9 PF13519 VWA_2: von Willebrand 99.8 1.4E-17 3E-22 144.4 18.6 164 6-184 2-169 (172)
10 cd01467 vWA_BatA_type VWA BatA 99.7 2.4E-16 5.2E-21 140.8 19.7 151 5-163 4-168 (180)
11 cd01465 vWA_subgroup VWA subgr 99.7 7.4E-16 1.6E-20 135.7 19.7 153 5-171 2-159 (170)
12 cd01451 vWA_Magnesium_chelatas 99.7 2.4E-15 5.3E-20 136.2 19.9 151 6-163 3-158 (178)
13 cd01458 vWA_ku Ku70/Ku80 N-ter 99.7 3.5E-15 7.5E-20 139.6 16.6 145 4-148 2-174 (218)
14 cd01472 vWA_collagen von Wille 99.7 9.5E-15 2.1E-19 129.7 18.5 153 6-173 3-161 (164)
15 cd01466 vWA_C3HC4_type VWA C3H 99.6 7.9E-15 1.7E-19 130.3 15.1 148 6-171 3-154 (155)
16 cd01480 vWA_collagen_alpha_1-V 99.6 2.1E-14 4.5E-19 131.2 17.9 146 5-159 4-160 (186)
17 cd01456 vWA_ywmD_type VWA ywmD 99.6 2E-14 4.4E-19 132.8 17.6 150 4-163 21-193 (206)
18 cd00198 vWFA Von Willebrand fa 99.6 7.1E-14 1.5E-18 117.7 17.6 150 5-162 2-155 (161)
19 TIGR03436 acidobact_VWFA VWFA- 99.6 6.7E-14 1.5E-18 136.0 19.8 156 5-172 55-238 (296)
20 smart00327 VWA von Willebrand 99.6 1.4E-13 3E-18 119.9 17.4 149 5-162 3-158 (177)
21 cd01470 vWA_complement_factors 99.6 1.7E-13 3.6E-18 125.8 18.7 160 5-175 2-189 (198)
22 cd01471 vWA_micronemal_protein 99.6 1.5E-13 3.3E-18 124.3 17.5 170 6-184 3-182 (186)
23 cd01450 vWFA_subfamily_ECM Von 99.6 1.7E-13 3.7E-18 118.1 16.4 147 6-162 3-155 (161)
24 cd01461 vWA_interalpha_trypsin 99.6 2.7E-13 5.9E-18 119.2 17.9 155 4-176 3-162 (171)
25 cd01463 vWA_VGCC_like VWA Volt 99.6 1.8E-13 4E-18 124.9 17.2 149 4-163 14-180 (190)
26 cd01482 vWA_collagen_alphaI-XI 99.5 4.4E-13 9.6E-18 119.6 18.4 154 6-174 3-162 (164)
27 cd01469 vWA_integrins_alpha_su 99.5 4.2E-13 9.2E-18 121.8 18.5 160 6-176 3-171 (177)
28 PRK13406 bchD magnesium chelat 99.5 3.4E-13 7.3E-18 144.4 19.9 167 4-184 402-579 (584)
29 cd01474 vWA_ATR ATR (Anthrax T 99.5 7.8E-13 1.7E-17 120.3 18.7 154 5-175 6-165 (185)
30 cd01460 vWA_midasin VWA_Midasi 99.5 3.5E-13 7.6E-18 131.8 17.5 170 5-185 62-257 (266)
31 cd01477 vWA_F09G8-8_type VWA F 99.5 6.3E-13 1.4E-17 123.8 18.1 148 5-160 21-183 (193)
32 cd01476 VWA_integrin_invertebr 99.5 4.9E-12 1.1E-16 111.6 18.4 145 6-159 3-154 (163)
33 cd01473 vWA_CTRP CTRP for CS 99.5 1.5E-12 3.3E-17 120.6 15.6 146 6-159 3-159 (192)
34 cd01454 vWA_norD_type norD typ 99.4 8.1E-12 1.8E-16 112.3 17.8 147 5-159 2-166 (174)
35 TIGR00868 hCaCC calcium-activa 99.4 2.2E-12 4.7E-17 142.7 17.1 162 5-184 306-473 (863)
36 cd01464 vWA_subfamily VWA subf 99.4 4.5E-12 9.7E-17 114.3 16.1 146 3-159 3-158 (176)
37 cd01475 vWA_Matrilin VWA_Matri 99.4 9E-12 1.9E-16 117.1 18.6 156 5-175 4-168 (224)
38 cd01462 VWA_YIEM_type VWA YIEM 99.4 1.8E-11 3.9E-16 107.2 17.8 135 5-148 2-136 (152)
39 TIGR02031 BchD-ChlD magnesium 99.4 1.1E-11 2.3E-16 133.0 19.5 151 5-163 409-574 (589)
40 PF00092 VWA: von Willebrand f 99.4 2.7E-11 6E-16 106.2 15.8 165 6-182 2-173 (178)
41 cd01455 vWA_F11C1-5a_type Von 99.4 1.5E-11 3.3E-16 115.2 14.8 157 5-176 2-176 (191)
42 TIGR02442 Cob-chelat-sub cobal 99.4 4.5E-11 9.8E-16 129.1 20.5 152 5-163 467-626 (633)
43 PTZ00441 sporozoite surface pr 99.3 1.3E-10 2.8E-15 123.7 18.9 162 5-174 44-214 (576)
44 PF13768 VWA_3: von Willebrand 99.3 8.4E-11 1.8E-15 103.3 14.3 143 5-163 2-150 (155)
45 cd01481 vWA_collagen_alpha3-VI 99.3 3.9E-10 8.5E-15 102.1 18.8 153 5-174 2-163 (165)
46 cd01457 vWA_ORF176_type VWA OR 99.3 2.1E-10 4.5E-15 105.9 16.3 153 4-162 3-166 (199)
47 COG1240 ChlD Mg-chelatase subu 99.2 4.4E-10 9.6E-15 109.3 18.3 150 6-162 81-237 (261)
48 TIGR03788 marine_srt_targ mari 99.1 1.9E-09 4.1E-14 115.4 17.6 144 5-162 273-421 (596)
49 TIGR00627 tfb4 transcription f 98.9 1.3E-07 2.7E-12 93.7 18.0 175 5-186 4-219 (279)
50 PF03731 Ku_N: Ku70/Ku80 N-ter 98.7 3.1E-07 6.8E-12 85.9 14.5 140 5-144 1-172 (224)
51 TIGR00578 ku70 ATP-dependent D 98.6 2.1E-06 4.5E-11 92.6 18.3 144 3-146 10-183 (584)
52 PRK10997 yieM hypothetical pro 98.4 5.9E-06 1.3E-10 87.4 16.1 140 5-158 325-467 (487)
53 cd01479 Sec24-like Sec24-like: 98.4 7.5E-06 1.6E-10 79.0 14.4 149 5-164 5-213 (244)
54 PF10138 vWA-TerF-like: vWA fo 98.3 2E-05 4.4E-10 74.8 16.0 170 5-185 3-184 (200)
55 cd01468 trunk_domain trunk dom 98.3 2.7E-05 5.8E-10 74.5 16.3 149 5-163 5-215 (239)
56 PF04811 Sec23_trunk: Sec23/Se 98.2 2.6E-05 5.6E-10 74.4 14.3 149 5-163 5-217 (243)
57 cd01478 Sec23-like Sec23-like: 98.2 2.3E-05 5.1E-10 76.9 14.1 146 5-163 5-247 (267)
58 COG4245 TerY Uncharacterized p 98.1 7.2E-05 1.6E-09 70.5 13.9 146 5-162 5-162 (207)
59 PF03850 Tfb4: Transcription f 98.1 0.00026 5.5E-09 70.2 18.1 173 5-185 3-216 (276)
60 PLN00162 transport protein sec 97.8 0.00035 7.7E-09 77.8 13.9 146 5-163 126-368 (761)
61 PF05762 VWA_CoxE: VWA domain 97.7 0.00086 1.9E-08 63.8 13.4 124 5-143 59-186 (222)
62 COG2425 Uncharacterized protei 97.6 0.0015 3.3E-08 68.5 14.5 132 6-148 275-408 (437)
63 KOG2487 RNA polymerase II tran 97.3 0.0027 5.8E-08 63.0 12.0 170 5-187 25-238 (314)
64 PF11265 Med25_VWA: Mediator c 97.3 0.024 5.3E-07 55.0 18.0 153 4-166 14-202 (226)
65 COG2304 Uncharacterized protei 97.1 0.0069 1.5E-07 60.5 13.0 148 3-161 37-190 (399)
66 PTZ00395 Sec24-related protein 97.1 0.0039 8.5E-08 72.4 11.6 134 5-147 954-1155(1560)
67 smart00187 INB Integrin beta s 96.9 0.073 1.6E-06 56.0 18.0 159 6-177 102-324 (423)
68 COG5242 TFB4 RNA polymerase II 96.6 0.11 2.4E-06 50.7 15.7 172 6-187 23-225 (296)
69 COG4867 Uncharacterized protei 96.2 0.075 1.6E-06 56.0 12.8 151 3-175 463-636 (652)
70 PF06707 DUF1194: Protein of u 96.1 0.16 3.4E-06 48.8 13.8 171 5-184 5-194 (205)
71 cd01459 vWA_copine_like VWA Co 95.8 0.62 1.3E-05 45.9 16.8 148 5-159 33-205 (254)
72 KOG1984 Vesicle coat complex C 95.1 0.2 4.2E-06 56.7 11.6 171 5-185 419-652 (1007)
73 KOG2326 DNA-binding subunit of 94.8 0.61 1.3E-05 51.0 14.0 145 1-146 2-166 (669)
74 PF02809 UIM: Ubiquitin intera 94.8 0.0072 1.6E-07 36.6 -0.2 17 320-336 1-17 (18)
75 PF02809 UIM: Ubiquitin intera 94.5 0.011 2.4E-07 35.8 0.1 16 222-237 2-17 (18)
76 smart00726 UIM Ubiquitin-inter 94.3 0.029 6.4E-07 36.9 1.8 20 222-241 1-20 (26)
77 KOG1986 Vesicle coat complex C 94.0 1.1 2.3E-05 49.9 13.9 144 6-162 124-354 (745)
78 COG1721 Uncharacterized conser 94.0 1.2 2.7E-05 46.2 14.1 133 5-147 226-362 (416)
79 PF07002 Copine: Copine; Inte 93.3 1.5 3.4E-05 39.7 11.7 120 22-145 9-146 (146)
80 KOG2353 L-type voltage-depende 92.7 0.99 2.1E-05 52.8 11.8 141 5-157 227-383 (1104)
81 PF00362 Integrin_beta: Integr 92.5 3.1 6.7E-05 44.0 14.2 159 6-177 105-327 (426)
82 COG5028 Vesicle coat complex C 92.4 2 4.3E-05 48.4 13.1 146 5-162 278-477 (861)
83 smart00726 UIM Ubiquitin-inter 91.9 0.073 1.6E-06 35.1 0.9 20 321-340 1-20 (26)
84 PF11775 CobT_C: Cobalamin bio 90.9 7.3 0.00016 37.9 13.8 136 5-148 14-189 (219)
85 TIGR01651 CobT cobaltochelatas 90.1 2.3 5.1E-05 46.7 10.7 59 88-148 499-569 (600)
86 PF11443 DUF2828: Domain of un 89.5 8.4 0.00018 42.1 14.3 107 3-118 340-448 (534)
87 PF09967 DUF2201: VWA-like dom 86.2 3.5 7.6E-05 36.1 7.5 92 6-118 1-94 (126)
88 PF10221 DUF2151: Cell cycle a 84.1 11 0.00023 42.5 11.6 120 6-125 8-171 (695)
89 COG4548 NorD Nitric oxide redu 81.8 8.4 0.00018 42.2 9.4 72 75-148 523-602 (637)
90 cd03811 GT1_WabH_like This fam 81.5 25 0.00055 32.3 11.6 55 106-164 187-244 (353)
91 cd03819 GT1_WavL_like This fam 81.0 53 0.0011 31.4 14.4 43 106-148 183-228 (355)
92 PF03853 YjeF_N: YjeF-related 80.2 10 0.00022 34.6 8.3 57 89-148 8-64 (169)
93 KOG1327 Copine [Signal transdu 78.1 39 0.00085 37.0 13.0 146 6-159 288-462 (529)
94 COG5148 RPN10 26S proteasome r 77.2 1.3 2.7E-05 42.6 1.5 28 352-379 173-215 (243)
95 KOG1985 Vesicle coat complex C 76.9 60 0.0013 37.4 14.4 143 5-159 296-498 (887)
96 KOG2327 DNA-binding subunit of 76.7 29 0.00064 38.3 11.7 141 3-145 18-183 (602)
97 cd05844 GT1_like_7 Glycosyltra 76.4 31 0.00068 33.3 11.0 52 107-162 187-241 (367)
98 cd04922 ACT_AKi-HSDH-ThrA_2 AC 75.9 7.9 0.00017 28.7 5.3 37 110-146 3-39 (66)
99 cd03820 GT1_amsD_like This fam 75.4 46 0.001 30.6 11.3 54 106-163 176-232 (348)
100 cd03794 GT1_wbuB_like This fam 75.4 53 0.0012 30.7 11.9 51 106-160 218-270 (394)
101 PF04285 DUF444: Protein of un 73.4 90 0.0019 33.3 14.0 108 4-130 246-360 (421)
102 cd04951 GT1_WbdM_like This fam 72.2 55 0.0012 31.2 11.4 53 107-163 187-242 (360)
103 COG0062 Uncharacterized conser 70.7 36 0.00078 32.8 9.6 57 89-148 32-88 (203)
104 cd04924 ACT_AK-Arch_2 ACT doma 68.3 15 0.00032 27.0 5.3 37 110-146 3-39 (66)
105 cd03795 GT1_like_4 This family 68.2 63 0.0014 30.7 10.8 51 107-163 190-241 (357)
106 COG2718 Uncharacterized conser 68.2 62 0.0013 34.3 11.2 114 4-136 246-368 (423)
107 COG1432 Uncharacterized conser 67.5 14 0.00031 34.3 6.0 58 80-148 89-146 (181)
108 cd04919 ACT_AK-Hom3_2 ACT doma 67.4 16 0.00034 27.3 5.2 37 110-146 3-39 (66)
109 cd03809 GT1_mtfB_like This fam 67.1 54 0.0012 31.0 10.0 42 107-148 194-238 (365)
110 PF12257 DUF3608: Protein of u 66.7 17 0.00037 36.6 6.8 141 6-148 73-272 (281)
111 cd03799 GT1_amsK_like This is 66.1 25 0.00054 33.4 7.6 77 107-189 178-258 (355)
112 cd03823 GT1_ExpE7_like This fa 66.0 1.1E+02 0.0024 28.6 11.8 43 106-148 189-232 (359)
113 cd03813 GT1_like_3 This family 64.9 14 0.0003 38.7 6.1 59 106-164 291-352 (475)
114 cd04962 GT1_like_5 This family 64.8 1.4E+02 0.003 28.9 12.9 76 107-189 196-273 (371)
115 cd04916 ACT_AKiii-YclM-BS_2 AC 64.6 19 0.00042 26.5 5.2 37 110-146 3-39 (66)
116 PRK15427 colanic acid biosynth 63.4 13 0.00029 38.1 5.5 52 109-164 223-277 (406)
117 PF03358 FMN_red: NADPH-depend 63.2 16 0.00035 31.7 5.3 57 108-164 1-70 (152)
118 PF00731 AIRC: AIR carboxylase 63.1 40 0.00087 31.0 7.9 61 109-173 2-62 (150)
119 PF00534 Glycos_transf_1: Glyc 62.9 36 0.00077 29.5 7.4 133 104-243 11-164 (172)
120 TIGR02877 spore_yhbH sporulati 62.0 75 0.0016 33.4 10.5 138 4-163 202-348 (371)
121 cd01840 SGNH_hydrolase_yrhL_li 61.5 1.1E+02 0.0024 26.7 10.7 72 71-146 16-89 (150)
122 cd03801 GT1_YqgM_like This fam 60.3 69 0.0015 29.4 9.2 57 106-166 197-256 (374)
123 PRK05325 hypothetical protein; 60.1 71 0.0015 33.9 10.1 138 4-164 222-370 (401)
124 cd03821 GT1_Bme6_like This fam 59.9 49 0.0011 30.9 8.2 56 106-163 201-259 (375)
125 cd03817 GT1_UGDG_like This fam 59.4 1.5E+02 0.0034 27.6 12.8 58 106-167 200-260 (374)
126 PLN02948 phosphoribosylaminoim 59.1 1E+02 0.0023 33.8 11.6 65 105-173 408-472 (577)
127 TIGR00288 conserved hypothetic 57.7 92 0.002 29.0 9.3 73 81-175 85-157 (160)
128 cd04868 ACT_AK-like ACT domain 57.3 32 0.0007 23.8 5.1 36 111-146 3-38 (60)
129 KOG2941 Beta-1,4-mannosyltrans 56.9 42 0.0009 35.5 7.6 63 103-175 8-70 (444)
130 cd03814 GT1_like_2 This family 56.6 1.7E+02 0.0038 27.4 11.9 41 108-148 197-239 (364)
131 cd06167 LabA_like LabA_like pr 56.1 28 0.0006 30.2 5.5 62 84-159 82-143 (149)
132 cd04918 ACT_AK1-AT_2 ACT domai 55.9 34 0.00073 26.1 5.3 38 110-148 3-40 (65)
133 PF01936 NYN: NYN domain; Int 55.0 21 0.00045 30.5 4.4 49 85-144 79-127 (146)
134 TIGR03088 stp2 sugar transfera 55.0 1.7E+02 0.0036 28.7 11.4 77 107-190 193-276 (374)
135 TIGR00197 yjeF_nterm yjeF N-te 54.2 46 0.001 31.5 7.0 52 90-146 31-82 (205)
136 PF01882 DUF58: Protein of unk 54.2 25 0.00055 27.9 4.6 40 4-43 41-80 (86)
137 cd03807 GT1_WbnK_like This fam 52.8 1.9E+02 0.0042 26.8 12.1 49 108-160 193-244 (365)
138 PF02441 Flavoprotein: Flavopr 51.7 21 0.00046 30.9 4.0 34 108-143 1-34 (129)
139 PLN03050 pyridoxine (pyridoxam 51.5 52 0.0011 32.3 7.1 34 108-143 61-94 (246)
140 PF00763 THF_DHG_CYH: Tetrahyd 50.4 95 0.0021 26.8 7.8 61 110-173 33-93 (117)
141 cd03798 GT1_wlbH_like This fam 50.0 69 0.0015 29.7 7.4 53 106-162 200-255 (377)
142 cd04949 GT1_gtfA_like This fam 49.9 2.2E+02 0.0047 27.8 11.3 52 108-163 204-258 (372)
143 PF00448 SRP54: SRP54-type pro 49.4 60 0.0013 30.4 7.0 55 109-163 2-56 (196)
144 cd04921 ACT_AKi-HSDH-ThrA-like 49.1 50 0.0011 25.5 5.4 37 110-146 3-39 (80)
145 PRK10307 putative glycosyl tra 47.9 1.6E+02 0.0034 29.7 10.1 53 108-164 229-283 (412)
146 cd04923 ACT_AK-LysC-DapG-like_ 47.4 50 0.0011 23.8 4.9 34 111-144 3-36 (63)
147 TIGR02690 resist_ArsH arsenica 47.2 43 0.00093 32.4 5.7 71 103-175 22-99 (219)
148 PRK14179 bifunctional 5,10-met 47.1 2.2E+02 0.0049 28.7 10.9 75 109-185 34-110 (284)
149 cd03812 GT1_CapH_like This fam 47.0 93 0.002 29.7 8.0 54 106-163 190-246 (358)
150 cd04936 ACT_AKii-LysC-BS-like_ 46.7 52 0.0011 23.7 4.9 34 111-144 3-36 (63)
151 cd04915 ACT_AK-Ectoine_2 ACT d 45.6 59 0.0013 25.0 5.3 39 109-148 3-41 (66)
152 PLN03049 pyridoxine (pyridoxam 45.6 81 0.0018 33.8 7.9 56 90-148 43-98 (462)
153 cd04892 ACT_AK-like_2 ACT doma 45.4 57 0.0012 23.1 4.9 37 110-146 2-38 (65)
154 PRK14184 bifunctional 5,10-met 44.3 2.9E+02 0.0062 28.0 11.2 76 109-186 33-110 (286)
155 COG3552 CoxE Protein containin 44.2 1.9E+02 0.004 30.7 10.0 112 6-134 221-339 (395)
156 KOG3768 DEAD box RNA helicase 44.0 61 0.0013 36.3 6.7 95 5-99 3-101 (888)
157 PRK15045 cellulose biosynthesi 44.0 1.6E+02 0.0035 32.3 9.8 127 29-163 32-165 (519)
158 PRK14169 bifunctional 5,10-met 42.9 3.2E+02 0.0068 27.7 11.2 76 109-186 32-109 (282)
159 PF10293 DUF2405: Domain of un 42.8 40 0.00086 31.0 4.5 29 220-248 112-143 (157)
160 cd03792 GT1_Trehalose_phosphor 40.9 2.2E+02 0.0048 28.1 9.8 84 106-189 188-276 (372)
161 cd03822 GT1_ecORF704_like This 40.1 3.2E+02 0.007 25.7 12.6 42 106-147 183-227 (366)
162 PRK14188 bifunctional 5,10-met 39.8 3E+02 0.0064 28.0 10.5 76 109-186 34-111 (296)
163 PRK14175 bifunctional 5,10-met 39.2 2.6E+02 0.0056 28.3 10.0 75 109-185 34-110 (286)
164 PRK14177 bifunctional 5,10-met 39.1 3E+02 0.0066 27.8 10.4 75 109-185 35-111 (284)
165 COG0528 PyrH Uridylate kinase 39.0 1.1E+02 0.0023 30.4 7.0 49 4-58 4-56 (238)
166 PRK14193 bifunctional 5,10-met 38.6 3.6E+02 0.0078 27.3 10.9 76 109-186 34-111 (284)
167 PF13911 AhpC-TSA_2: AhpC/TSA 38.4 74 0.0016 26.5 5.2 51 125-184 2-52 (115)
168 PRK14194 bifunctional 5,10-met 37.8 3.1E+02 0.0068 28.0 10.4 91 91-186 20-112 (301)
169 COG4907 Predicted membrane pro 37.8 15 0.00032 39.7 0.9 34 139-176 517-552 (595)
170 COG1553 DsrE Uncharacterized c 37.3 1.1E+02 0.0025 27.5 6.3 61 81-144 11-80 (126)
171 TIGR02095 glgA glycogen/starch 37.2 1.9E+02 0.0042 30.0 9.1 53 107-161 290-343 (473)
172 PRK14168 bifunctional 5,10-met 37.1 3.6E+02 0.0079 27.4 10.7 77 109-187 35-113 (297)
173 cd03364 TOPRIM_DnaG_primases T 37.1 61 0.0013 25.5 4.2 37 107-144 43-79 (79)
174 PF13477 Glyco_trans_4_2: Glyc 37.0 74 0.0016 26.6 5.0 27 122-148 10-36 (139)
175 PRK14170 bifunctional 5,10-met 36.9 4E+02 0.0087 27.0 10.9 76 109-186 33-110 (284)
176 smart00275 G_alpha G protein a 36.4 4.8E+02 0.01 26.6 12.4 51 4-58 209-261 (342)
177 PF00483 NTP_transferase: Nucl 36.4 1.3E+02 0.0028 27.9 7.0 108 50-175 2-111 (248)
178 cd03805 GT1_ALG2_like This fam 36.3 1.6E+02 0.0034 28.9 7.9 55 107-161 210-274 (392)
179 PRK06756 flavodoxin; Provision 36.1 59 0.0013 28.4 4.4 39 108-146 2-40 (148)
180 KOG2935 Ataxin 3/Josephin [Gen 36.1 24 0.00051 35.5 2.0 36 290-337 216-251 (315)
181 PRK15484 lipopolysaccharide 1, 36.1 2E+02 0.0043 29.1 8.8 41 107-147 192-235 (380)
182 cd05009 SIS_GlmS_GlmD_2 SIS (S 35.4 49 0.0011 28.3 3.7 24 120-143 73-96 (153)
183 PRK03692 putative UDP-N-acetyl 35.0 1.6E+02 0.0035 28.8 7.7 79 88-176 88-166 (243)
184 PRK14171 bifunctional 5,10-met 34.6 4.5E+02 0.0097 26.7 10.8 75 109-185 34-110 (288)
185 COG1105 FruK Fructose-1-phosph 34.2 1.1E+02 0.0023 31.5 6.4 113 49-177 130-244 (310)
186 PRK14176 bifunctional 5,10-met 34.1 4.8E+02 0.01 26.5 10.9 77 109-187 40-118 (287)
187 TIGR01162 purE phosphoribosyla 33.7 2.5E+02 0.0053 26.2 8.1 13 222-234 128-140 (156)
188 PRK14180 bifunctional 5,10-met 33.4 3.8E+02 0.0083 27.1 10.1 76 109-186 33-110 (282)
189 PRK08105 flavodoxin; Provision 33.4 52 0.0011 29.5 3.6 37 109-145 3-39 (149)
190 PF03028 Dynein_heavy: Dynein 33.3 23 0.0005 39.3 1.7 38 111-148 119-156 (707)
191 PRK14166 bifunctional 5,10-met 32.7 4E+02 0.0087 26.9 10.1 76 109-186 32-109 (282)
192 PRK05569 flavodoxin; Provision 32.7 82 0.0018 27.1 4.7 39 109-147 3-41 (141)
193 cd03791 GT1_Glycogen_synthase_ 32.5 2.7E+02 0.0059 28.6 9.3 54 106-161 294-348 (476)
194 PF04244 DPRP: Deoxyribodipyri 32.3 15 0.00032 35.6 -0.0 72 103-186 37-111 (224)
195 cd05017 SIS_PGI_PMI_1 The memb 32.2 2.3E+02 0.0051 23.8 7.3 54 109-176 46-99 (119)
196 TIGR03567 FMN_reduc_SsuE FMN r 32.1 2.4E+02 0.0052 25.5 7.8 38 109-146 1-40 (171)
197 cd03796 GT1_PIG-A_like This fa 32.0 2.1E+02 0.0046 28.7 8.2 54 107-164 192-248 (398)
198 TIGR03449 mycothiol_MshA UDP-N 32.0 5.2E+02 0.011 25.7 11.8 58 107-164 218-281 (405)
199 PRK10565 putative carbohydrate 31.8 1.6E+02 0.0035 31.9 7.7 40 107-148 60-99 (508)
200 COG3660 Predicted nucleoside-d 31.4 1.4E+02 0.003 30.6 6.5 77 80-161 133-218 (329)
201 COG0166 Pgi Glucose-6-phosphat 31.4 3.4E+02 0.0073 29.2 9.8 86 89-180 92-180 (446)
202 PF05679 CHGN: Chondroitin N-a 31.1 4.7E+02 0.01 28.3 11.0 115 43-176 229-351 (499)
203 cd06543 GH18_PF-ChiA-like PF-C 30.6 1.1E+02 0.0025 30.7 5.9 19 126-144 158-176 (294)
204 PRK14190 bifunctional 5,10-met 30.6 4.7E+02 0.01 26.5 10.2 76 109-186 34-111 (284)
205 TIGR02918 accessory Sec system 30.6 1.4E+02 0.003 32.1 6.9 51 109-163 320-373 (500)
206 TIGR00750 lao LAO/AO transport 30.6 2.1E+02 0.0046 28.4 7.8 52 96-147 22-73 (300)
207 cd00859 HisRS_anticodon HisRS 30.5 1.4E+02 0.0031 22.6 5.3 26 120-145 12-37 (91)
208 PRK14189 bifunctional 5,10-met 30.4 5.9E+02 0.013 25.8 11.5 77 109-187 34-112 (285)
209 COG4547 CobT Cobalamin biosynt 30.3 2.2E+02 0.0048 31.2 8.1 43 6-53 416-459 (620)
210 PF03808 Glyco_tran_WecB: Glyc 30.2 3.7E+02 0.008 24.5 8.8 81 89-177 32-112 (172)
211 PF00117 GATase: Glutamine ami 30.2 59 0.0013 29.4 3.5 47 110-161 45-92 (192)
212 cd04912 ACT_AKiii-LysC-EC-like 30.1 1.4E+02 0.003 23.3 5.2 35 111-145 4-38 (75)
213 PRK10569 NAD(P)H-dependent FMN 30.0 1.1E+02 0.0023 28.7 5.3 66 108-175 1-75 (191)
214 PRK05568 flavodoxin; Provision 29.9 1E+02 0.0022 26.4 4.9 40 109-148 3-42 (142)
215 PRK14174 bifunctional 5,10-met 29.9 4.9E+02 0.011 26.5 10.3 76 109-186 33-110 (295)
216 PRK06703 flavodoxin; Provision 29.7 82 0.0018 27.6 4.3 39 109-147 3-41 (151)
217 PRK10792 bifunctional 5,10-met 29.6 4.7E+02 0.01 26.5 10.1 77 109-187 35-113 (285)
218 PF02780 Transketolase_C: Tran 29.4 97 0.0021 26.3 4.5 52 108-162 10-61 (124)
219 PRK04155 chaperone protein Hch 29.4 2.4E+02 0.0051 28.4 7.9 25 121-145 75-99 (287)
220 PLN02918 pyridoxine (pyridoxam 29.3 1.6E+02 0.0035 32.5 7.1 54 90-146 119-172 (544)
221 PRK14191 bifunctional 5,10-met 29.2 5.5E+02 0.012 26.0 10.4 75 109-185 33-109 (285)
222 PF13362 Toprim_3: Toprim doma 28.8 1.7E+02 0.0036 23.7 5.6 41 106-146 40-81 (96)
223 cd06844 STAS Sulphate Transpor 28.4 1.4E+02 0.003 24.3 5.1 67 80-148 13-83 (100)
224 KOG2199 Signal transducing ada 28.1 24 0.00052 37.5 0.6 22 319-340 162-183 (462)
225 TIGR02398 gluc_glyc_Psyn gluco 28.1 8.1E+02 0.017 26.6 14.5 178 53-249 242-464 (487)
226 PF13727 CoA_binding_3: CoA-bi 28.0 2.8E+02 0.0062 23.8 7.4 81 87-174 86-175 (175)
227 PRK14167 bifunctional 5,10-met 27.9 5.7E+02 0.012 26.1 10.3 76 109-186 33-110 (297)
228 KOG2585 Uncharacterized conser 27.7 3E+02 0.0065 29.8 8.6 53 109-164 267-319 (453)
229 PRK12553 ATP-dependent Clp pro 27.7 2.9E+02 0.0062 26.2 7.8 70 77-148 36-105 (207)
230 PF02635 DrsE: DsrE/DsrF-like 27.5 2.2E+02 0.0048 23.0 6.3 26 123-148 18-46 (122)
231 PRK09271 flavodoxin; Provision 27.5 1.1E+02 0.0024 27.4 4.8 39 108-146 1-39 (160)
232 PRK09004 FMN-binding protein M 27.4 81 0.0018 28.1 3.8 36 109-144 3-38 (146)
233 PRK13981 NAD synthetase; Provi 27.1 8.1E+02 0.018 26.4 12.4 92 19-146 251-345 (540)
234 cd06533 Glyco_transf_WecG_TagA 27.1 4E+02 0.0086 24.3 8.4 79 88-174 29-107 (171)
235 cd03413 CbiK_C Anaerobic cobal 27.0 3E+02 0.0065 23.3 7.1 58 111-174 3-63 (103)
236 cd07041 STAS_RsbR_RsbS_like Su 26.9 1.8E+02 0.0039 23.8 5.6 67 80-148 15-85 (109)
237 PTZ00260 dolichyl-phosphate be 26.9 6.7E+02 0.014 25.3 12.3 95 25-134 84-189 (333)
238 PRK05749 3-deoxy-D-manno-octul 26.6 6.9E+02 0.015 25.4 11.1 52 109-162 234-285 (425)
239 KOG1226 Integrin beta subunit 26.6 1.8E+02 0.0039 33.4 7.0 148 5-162 134-344 (783)
240 PF07745 Glyco_hydro_53: Glyco 26.2 2.3E+02 0.005 29.3 7.3 62 82-148 52-135 (332)
241 PF09875 DUF2102: Uncharacteri 26.1 1.7E+02 0.0036 25.6 5.3 64 112-176 2-65 (104)
242 cd04937 ACT_AKi-DapG-BS_2 ACT 26.1 1.6E+02 0.0035 22.1 4.8 34 110-143 3-36 (64)
243 cd04955 GT1_like_6 This family 25.9 2.9E+02 0.0063 26.3 7.7 40 108-148 193-233 (363)
244 PLN02897 tetrahydrofolate dehy 25.9 5.8E+02 0.013 26.7 10.1 76 109-186 88-165 (345)
245 KOG1198 Zinc-binding oxidoredu 25.8 2.4E+02 0.0051 29.1 7.3 64 79-148 124-193 (347)
246 COG1393 ArsC Arsenate reductas 25.6 2.4E+02 0.0053 24.6 6.4 49 111-163 3-51 (117)
247 PF12646 DUF3783: Domain of un 25.6 1.7E+02 0.0037 22.3 4.8 49 109-162 2-50 (58)
248 PF05378 Hydant_A_N: Hydantoin 25.6 2.2E+02 0.0047 26.4 6.4 39 121-160 132-173 (176)
249 PRK14173 bifunctional 5,10-met 25.5 2.8E+02 0.006 28.2 7.6 74 109-184 31-106 (287)
250 cd07017 S14_ClpP_2 Caseinolyti 25.5 3.5E+02 0.0076 24.6 7.7 68 79-148 12-79 (171)
251 PLN02616 tetrahydrofolate dehy 25.5 6.7E+02 0.015 26.4 10.5 76 109-186 105-182 (364)
252 PF07739 TipAS: TipAS antibiot 25.5 48 0.001 27.5 1.9 17 366-382 51-67 (118)
253 TIGR02370 pyl_corrinoid methyl 25.3 4.8E+02 0.01 24.4 8.8 84 82-174 49-142 (197)
254 PRK14186 bifunctional 5,10-met 25.3 6.6E+02 0.014 25.6 10.3 77 109-187 34-112 (297)
255 PRK14172 bifunctional 5,10-met 25.2 6.6E+02 0.014 25.4 10.2 72 111-185 37-110 (278)
256 PF13768 VWA_3: von Willebrand 25.0 2.2E+02 0.0048 24.6 6.1 13 216-228 130-142 (155)
257 PF00072 Response_reg: Respons 25.0 2.2E+02 0.0049 22.3 5.7 65 111-183 46-110 (112)
258 COG0426 FpaA Uncharacterized f 25.0 4E+02 0.0087 28.3 8.9 49 109-159 248-296 (388)
259 cd03808 GT1_cap1E_like This fa 24.9 5.5E+02 0.012 23.6 12.7 42 107-148 187-231 (359)
260 PLN02683 pyruvate dehydrogenas 24.8 2.2E+02 0.0049 29.3 7.0 48 124-176 242-289 (356)
261 cd04905 ACT_CM-PDT C-terminal 24.7 1.7E+02 0.0036 22.9 4.8 44 100-143 34-77 (80)
262 cd03825 GT1_wcfI_like This fam 24.4 1.3E+02 0.0028 28.7 4.9 40 108-147 1-41 (365)
263 PLN02235 ATP citrate (pro-S)-l 24.4 4.5E+02 0.0098 28.2 9.2 136 39-184 262-412 (423)
264 PRK14185 bifunctional 5,10-met 24.4 5.9E+02 0.013 25.9 9.7 77 109-187 33-111 (293)
265 TIGR00493 clpP ATP-dependent C 24.3 4E+02 0.0086 25.0 8.0 68 79-148 29-96 (191)
266 cd02070 corrinoid_protein_B12- 24.3 4E+02 0.0086 24.8 8.0 59 107-174 82-140 (201)
267 PRK00726 murG undecaprenyldiph 24.2 1.1E+02 0.0024 30.1 4.5 38 108-146 2-39 (357)
268 TIGR01370 cysRS possible cyste 24.2 4.5E+02 0.0097 27.0 8.9 121 19-174 179-305 (315)
269 COG3958 Transketolase, C-termi 24.2 2.6E+02 0.0055 28.9 7.0 49 122-175 204-252 (312)
270 PRK09922 UDP-D-galactose:(gluc 23.9 2.2E+02 0.0048 28.1 6.6 55 108-167 180-237 (359)
271 TIGR01753 flav_short flavodoxi 23.9 1.1E+02 0.0024 25.7 4.0 38 110-147 1-38 (140)
272 PRK14182 bifunctional 5,10-met 23.6 7.5E+02 0.016 25.1 10.2 76 109-186 32-109 (282)
273 PRK14183 bifunctional 5,10-met 23.6 7.4E+02 0.016 25.1 10.2 76 109-186 33-110 (281)
274 PRK07765 para-aminobenzoate sy 23.4 90 0.0019 29.6 3.5 38 111-148 50-88 (214)
275 PRK11145 pflA pyruvate formate 23.4 1.8E+02 0.004 27.5 5.7 51 110-161 73-123 (246)
276 cd02037 MRP-like MRP (Multiple 23.4 3.4E+02 0.0074 24.0 7.1 63 111-176 95-168 (169)
277 PRK03767 NAD(P)H:quinone oxido 23.2 1.3E+02 0.0029 27.8 4.6 40 109-148 3-43 (200)
278 cd04946 GT1_AmsK_like This fam 23.1 8.1E+02 0.018 25.0 11.3 51 109-161 231-284 (407)
279 PRK14974 cell division protein 23.0 5.1E+02 0.011 26.6 9.1 56 107-162 139-194 (336)
280 cd03800 GT1_Sucrose_synthase T 23.0 4E+02 0.0086 25.8 8.1 57 107-163 219-280 (398)
281 TIGR00377 ant_ant_sig anti-ant 22.9 2.3E+02 0.005 22.8 5.5 39 109-147 44-86 (108)
282 TIGR00696 wecB_tagA_cpsF bacte 22.8 4.4E+02 0.0096 24.5 7.9 77 90-176 33-109 (177)
283 TIGR02886 spore_II_AA anti-sig 22.6 2.9E+02 0.0063 22.4 6.1 67 80-148 13-83 (106)
284 PF13662 Toprim_4: Toprim doma 22.6 55 0.0012 25.9 1.7 36 107-143 46-81 (81)
285 PRK06523 short chain dehydroge 22.6 1.9E+02 0.004 26.9 5.5 21 127-147 165-185 (260)
286 PF00574 CLP_protease: Clp pro 22.5 2.3E+02 0.0049 25.7 5.9 66 79-148 19-86 (182)
287 cd03415 CbiX_CbiC Archaeal sir 22.5 3.3E+02 0.0072 24.0 6.7 63 115-183 9-78 (125)
288 PRK14489 putative bifunctional 22.4 1.5E+02 0.0032 30.4 5.1 42 121-164 186-231 (366)
289 TIGR00725 conserved hypothetic 22.2 3.4E+02 0.0073 24.7 6.9 61 109-176 3-64 (159)
290 PF10147 CR6_interact: Growth 21.7 22 0.00048 34.6 -1.0 19 367-385 173-191 (217)
291 COG1763 MobB Molybdopterin-gua 21.7 1.6E+02 0.0035 27.2 4.7 39 108-146 2-40 (161)
292 cd04891 ACT_AK-LysC-DapG-like_ 21.6 2.6E+02 0.0056 19.4 5.0 30 119-148 9-38 (61)
293 KOG4848 Extracellular matrix-a 21.4 34 0.00073 33.0 0.2 18 367-384 184-201 (225)
294 cd03816 GT1_ALG1_like This fam 21.4 3.5E+02 0.0076 27.7 7.7 51 109-163 233-292 (415)
295 cd08551 Fe-ADH iron-containing 21.4 3.3E+02 0.0072 27.6 7.4 51 92-148 41-91 (370)
296 TIGR01678 FAD_lactone_ox sugar 21.3 1.8E+02 0.0039 30.9 5.6 58 120-178 22-86 (438)
297 PLN02516 methylenetetrahydrofo 21.2 8.9E+02 0.019 24.7 10.6 74 110-186 43-118 (299)
298 PLN02871 UDP-sulfoquinovose:DA 21.1 1.8E+02 0.0039 30.2 5.5 42 105-146 56-101 (465)
299 PRK11892 pyruvate dehydrogenas 21.1 2.9E+02 0.0062 29.8 7.1 49 123-176 353-401 (464)
300 cd04913 ACT_AKii-LysC-BS-like_ 21.1 2.1E+02 0.0046 20.9 4.6 29 119-147 10-38 (75)
301 cd04920 ACT_AKiii-DAPDC_2 ACT 21.0 2.3E+02 0.005 21.4 4.8 37 110-148 2-38 (63)
302 PRK06171 sorbitol-6-phosphate 21.0 2.4E+02 0.0051 26.4 5.8 20 127-146 171-190 (266)
303 cd04935 ACT_AKiii-DAPDC_1 ACT 20.8 2.8E+02 0.0061 21.9 5.4 33 113-145 6-38 (75)
304 PRK00170 azoreductase; Reviewe 20.8 2E+02 0.0043 26.1 5.2 40 108-147 2-46 (201)
305 cd01025 TOPRIM_recR TOPRIM_rec 20.7 2.2E+02 0.0048 24.9 5.1 52 96-148 46-97 (112)
306 cd08179 NADPH_BDH NADPH-depend 20.7 2.9E+02 0.0063 28.3 6.8 47 110-159 55-101 (375)
307 TIGR03728 glyco_access_1 glyco 20.6 2.5E+02 0.0055 28.3 6.1 50 124-175 3-65 (265)
308 PRK08339 short chain dehydroge 20.6 1.9E+02 0.004 27.5 5.1 62 85-148 115-191 (263)
309 KOG3572 Uncharacterized conser 20.5 2.1E+02 0.0044 35.1 6.1 142 6-147 294-497 (1701)
310 CHL00144 odpB pyruvate dehydro 20.4 3.7E+02 0.008 27.4 7.4 49 123-176 214-262 (327)
311 cd03802 GT1_AviGT4_like This f 20.3 3.3E+02 0.0072 25.6 6.8 41 106-148 169-209 (335)
312 cd08194 Fe-ADH6 Iron-containin 20.3 3.5E+02 0.0076 27.7 7.3 38 110-148 54-91 (375)
313 PRK08993 2-deoxy-D-gluconate 3 20.3 2.3E+02 0.005 26.4 5.6 22 127-148 171-192 (253)
314 PF05081 DUF682: Protein of un 20.3 2.5E+02 0.0055 26.1 5.6 45 90-137 105-149 (152)
315 TIGR02793 nikR nickel-responsi 20.3 1.9E+02 0.0041 25.9 4.7 38 16-54 19-57 (129)
316 PF10740 DUF2529: Protein of u 20.2 1.6E+02 0.0036 27.8 4.5 35 106-143 81-115 (172)
317 COG0864 NikR Predicted transcr 20.2 1.7E+02 0.0037 26.6 4.4 37 21-57 27-65 (136)
318 cd04795 SIS SIS domain. SIS (S 20.2 2.4E+02 0.0052 21.5 4.9 22 122-143 60-81 (87)
319 PRK14187 bifunctional 5,10-met 20.2 9.3E+02 0.02 24.5 10.7 76 109-186 34-111 (294)
320 PF02635 DrsE: DsrE/DsrF-like 20.1 2.6E+02 0.0057 22.6 5.3 63 81-146 11-85 (122)
No 1
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-85 Score=612.26 Aligned_cols=240 Identities=63% Similarity=0.973 Sum_probs=227.5
Q ss_pred CCcceEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcc
Q 015559 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLE 80 (404)
Q Consensus 1 m~lEa~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~ 80 (404)
||||+||||||||+|||||||.||||+||+++|+.+|+.|+++||||+||||+|++..++||+|||+|+++|+++||.++
T Consensus 1 MvlEatmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLsT~T~d~gkils~lh~i~ 80 (259)
T KOG2884|consen 1 MVLEATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLSTLTSDRGKILSKLHGIQ 80 (259)
T ss_pred CCcceEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeeeeccccchHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015559 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (404)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~ 160 (404)
++|+++|.+||++|+++||||++|+|++|||+|||||+.+++++|+++||+|||++|.||||.||+.. +|+++|.+|++
T Consensus 81 ~~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e~ekeLv~~akrlkk~~Vaidii~FGE~~-~~~e~l~~fid 159 (259)
T KOG2884|consen 81 PHGKANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEESEKELVKLAKRLKKNKVAIDIINFGEAE-NNTEKLFEFID 159 (259)
T ss_pred cCCcccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchhhHHHHHHHHHHHHhcCeeEEEEEecccc-ccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 78999999999
Q ss_pred HhcC-CCCcEEEEeCCCCchhhhhhhcCccccCCCCCCCchhHhHHHhhhcCCCCCccCCCCCCCHHHHHHHHhcHHHHH
Q 015559 161 AVNN-NDSSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEER 239 (404)
Q Consensus 161 ~vn~-~d~Shlv~vp~g~~lLsD~l~sspi~~g~~~~~~~~~~~~~~~~~~~~~~~efgvDp~~DPELa~ALr~SlEEe~ 239 (404)
++|+ +++||+|+||||+ +|+|+|++|||+.||+ |+++ ++.++.|..|+|||||++|||||||||+||||||
T Consensus 160 a~N~~~~gshlv~Vppg~-~L~d~l~ssPii~ge~-g~a~------~~~~a~g~~f~fgvdp~~DPELAlALRlSMEEer 231 (259)
T KOG2884|consen 160 ALNGKGDGSHLVSVPPGP-LLSDALLSSPIIQGED-GGAA------AGLGANGMDFEFGVDPEDDPELALALRLSMEEER 231 (259)
T ss_pred HhcCCCCCceEEEeCCCc-cHHHHhhcCceeccCc-cccc------ccccccccccccCCCcccCHHHHHHHHhhHHHHH
Confidence 9999 7899999999999 8999999999999987 2222 2244556689999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 015559 240 ARQEAAAKRA 249 (404)
Q Consensus 240 ~rq~~~~~~~ 249 (404)
+|||++++++
T Consensus 232 ~rQe~aa~~~ 241 (259)
T KOG2884|consen 232 ARQERAAQKA 241 (259)
T ss_pred HHHHHHhhhc
Confidence 9999776553
No 2
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-70 Score=500.67 Aligned_cols=233 Identities=50% Similarity=0.748 Sum_probs=221.4
Q ss_pred CCcceEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcc
Q 015559 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLE 80 (404)
Q Consensus 1 m~lEa~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~ 80 (404)
||||||||+||||+||+||||.||||+||+++|..+++.||+.||+|+||||+.++..+.||+|||.++++|+++||.+.
T Consensus 1 mvlEatvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~vlsT~T~~~gkilt~lhd~~ 80 (243)
T COG5148 1 MVLEATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLSTPTKQRGKILTFLHDIR 80 (243)
T ss_pred CCcceEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcchhccchhhhhHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015559 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (404)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~ 160 (404)
+.|+.++..+|++|+++||||.+|.+++|||+|||||+.+++++|+.+||+||||||+|+||.||+.. |.+-|.+||+
T Consensus 81 ~~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~esedeLirlak~lkknnVAidii~fGE~~--n~~~l~efId 158 (243)
T COG5148 81 LHGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQESEDELIRLAKQLKKNNVAIDIIFFGEAA--NMAGLFEFID 158 (243)
T ss_pred ccCcchHHHHHHHHHHHHhcccCCccceEEEEEecCcccccHHHHHHHHHHHHhcCeeEEEEehhhhh--hhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999865 8899999999
Q ss_pred HhcCCCCcEEEEeCCCCchhhhhhhcCccccCCCCCCCchhHhHHHhhhcCCCCCccCCCCCCCHHHHHHHHhcHHHHHH
Q 015559 161 AVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERA 240 (404)
Q Consensus 161 ~vn~~d~Shlv~vp~g~~lLsD~l~sspi~~g~~~~~~~~~~~~~~~~~~~~~~~efgvDp~~DPELa~ALr~SlEEe~~ 240 (404)
++|+.+.||++++||+|.+|+++|-+||| |.| .-|+.+.||||||||+|||||||||+||||||+
T Consensus 159 a~N~~dsshl~~~~P~p~ll~~~~~~spi--g~g-------------~~g~~~~~e~gvDp~lDpELA~AlrLSmeEek~ 223 (243)
T COG5148 159 ATNFSDSSHLEVKPPNPELLDRVLPFSPI--GQG-------------VVGDDLQLEYGVDPNLDPELAEALRLSMEEEKK 223 (243)
T ss_pred hhccccceeeEecCCCHHHHHhhccCCcc--ccc-------------cccCccceecCCCCCCCHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999998 222 112334799999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 015559 241 RQEAAAKRAA 250 (404)
Q Consensus 241 rq~~~~~~~~ 250 (404)
||+.++++..
T Consensus 224 rQe~~~qk~~ 233 (243)
T COG5148 224 RQEVAAQKSS 233 (243)
T ss_pred HHHHHHHhhh
Confidence 9999887643
No 3
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=100.00 E-value=1.9e-56 Score=414.69 Aligned_cols=187 Identities=65% Similarity=0.983 Sum_probs=184.0
Q ss_pred CCcceEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcc
Q 015559 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLE 80 (404)
Q Consensus 1 m~lEa~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~ 80 (404)
|+|||+|||||+|+||+++||+||||++|+++++.|+.+||++||+++||||+|+|+.+++++|||+|+++++.+|+.+.
T Consensus 1 m~~ea~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT~D~~~~~~~L~~i~ 80 (187)
T cd01452 1 MVLEATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLTNDQGKILSKLHDVQ 80 (187)
T ss_pred CCceEEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015559 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (404)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~ 160 (404)
++|+++|++||++|+.+|||++++.+++|||+|++|++++|++++++++++|||+||+|+|||||+.. +|.+||++|++
T Consensus 81 ~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~-~~~~~l~~~~~ 159 (187)
T cd01452 81 PKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEID-DNTEKLTAFID 159 (187)
T ss_pred CCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCC-CCHHHHHHHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999998 89999999999
Q ss_pred HhcCCCCcEEEEeCCCCchhhhhhhcCc
Q 015559 161 AVNNNDSSHLVHVPPGPNALSDVLLSTP 188 (404)
Q Consensus 161 ~vn~~d~Shlv~vp~g~~lLsD~l~ssp 188 (404)
++|++++||||+||+|+++|||+|++||
T Consensus 160 ~~~~~~~s~~~~~~~~~~~lsd~~~~s~ 187 (187)
T cd01452 160 AVNGKDGSHLVSVPPGENLLSDALLSSP 187 (187)
T ss_pred HhcCCCCceEEEeCCCCchhHHHhhcCC
Confidence 9999999999999999999999999998
No 4
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=100.00 E-value=2.9e-38 Score=294.47 Aligned_cols=169 Identities=21% Similarity=0.305 Sum_probs=154.2
Q ss_pred EEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc---cccCCC
Q 015559 9 CIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL---EIGGEL 85 (404)
Q Consensus 9 vIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l---~~~G~~ 85 (404)
|||+|+||+++||+||||.+++.+++.|+++||+|||++|||||+|+++.+++++++++++.+|+.+|.++ .|.|++
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls~lsgn~~~h~~~L~~~~~~~~~G~~ 80 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLSELSGNPQEHIEALKKLRKLEPSGEP 80 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEeeecCCCHHHHHHHHHHhccCCCCCCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999988766 699999
Q ss_pred cHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCC
Q 015559 86 NLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNN 165 (404)
Q Consensus 86 sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~ 165 (404)
+|+|||++|+.+|||+|. +..++||+++||..++||+++++++++||+++|+|+||||++|++ +|+++++.|+
T Consensus 81 SLqN~Le~A~~~L~~~p~-~~srEIlvi~gSl~t~Dp~di~~ti~~l~~~~IrvsvI~laaEv~----I~k~i~~~T~-- 153 (193)
T PF04056_consen 81 SLQNGLEMARSSLKHMPS-HGSREILVIFGSLTTCDPGDIHETIESLKKENIRVSVISLAAEVY----ICKKICKETG-- 153 (193)
T ss_pred hHHHHHHHHHHHHhhCcc-ccceEEEEEEeecccCCchhHHHHHHHHHHcCCEEEEEEEhHHHH----HHHHHHHhhC--
Confidence 999999999999999875 344567777788889999999999999999999999999999996 9999999995
Q ss_pred CCcEEEEeCCCCchhhhhhhcC
Q 015559 166 DSSHLVHVPPGPNALSDVLLST 187 (404)
Q Consensus 166 d~Shlv~vp~g~~lLsD~l~ss 187 (404)
|.|.|.+.+. | |.|.|+..
T Consensus 154 -G~y~V~lde~-H-~~~lL~~~ 172 (193)
T PF04056_consen 154 -GTYGVILDED-H-FKELLMEH 172 (193)
T ss_pred -CEEEEecCHH-H-HHHHHHhh
Confidence 4777777664 4 88888766
No 5
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=5.4e-31 Score=258.57 Aligned_cols=174 Identities=20% Similarity=0.294 Sum_probs=155.9
Q ss_pred cceEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcc-c
Q 015559 3 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLE-I 81 (404)
Q Consensus 3 lEa~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~-~ 81 (404)
+..+||+||.|++|...||+|+|+..+.++++.|+.+||+|||++|+|||+++++.+.+++.+|+|+..++.+|.++. +
T Consensus 60 iRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~ltgnp~~hI~aL~~~~~~ 139 (378)
T KOG2807|consen 60 IRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTDLTGNPRIHIHALKGLTEC 139 (378)
T ss_pred heeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHHhcCCHHHHHHHHhccccc
Confidence 467999999999999999999999999999999999999999999999999999999999999999999999999985 8
Q ss_pred cCCCcHHHHHHHHHHHhhhcCCCCCCeE-EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015559 82 GGELNLAAGIQVAQLALKHRQNKKQQQR-IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~~k~~~~R-IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~ 160 (404)
.|+++|+|||++|+..|||.+. |..| |+|+++|..++||+++.+++++||+.||||.|||+.+++. +|+.+++
T Consensus 140 ~g~fSLqNaLe~a~~~Lk~~p~--H~sREVLii~sslsT~DPgdi~~tI~~lk~~kIRvsvIgLsaEv~----icK~l~k 213 (378)
T KOG2807|consen 140 SGDFSLQNALELAREVLKHMPG--HVSREVLIIFSSLSTCDPGDIYETIDKLKAYKIRVSVIGLSAEVF----ICKELCK 213 (378)
T ss_pred CCChHHHHHHHHHHHHhcCCCc--ccceEEEEEEeeecccCcccHHHHHHHHHhhCeEEEEEeechhHH----HHHHHHH
Confidence 9999999999999999999754 5545 4444466667899999999999999999999999999995 9999999
Q ss_pred HhcCCCCcEEEEeCCCCchhhhhhhcC
Q 015559 161 AVNNNDSSHLVHVPPGPNALSDVLLST 187 (404)
Q Consensus 161 ~vn~~d~Shlv~vp~g~~lLsD~l~ss 187 (404)
+|| +-|.|.+.++ | |.+.+.-.
T Consensus 214 aT~---G~Y~V~lDe~-H-lkeLl~e~ 235 (378)
T KOG2807|consen 214 ATG---GRYSVALDEG-H-LKELLLEH 235 (378)
T ss_pred hhC---CeEEEEeCHH-H-HHHHHHhc
Confidence 996 4778888776 3 66666444
No 6
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=99.97 E-value=1.7e-29 Score=231.85 Aligned_cols=173 Identities=20% Similarity=0.294 Sum_probs=147.8
Q ss_pred cceEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc-cc
Q 015559 3 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL-EI 81 (404)
Q Consensus 3 lEa~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l-~~ 81 (404)
+..+||+||+|.||.+.||.||||++++.+++.|++.+++.||.++||||+|+++.+++++|||.|+..++..|+.+ .+
T Consensus 3 ~r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT~D~~~~~~~L~~~~~~ 82 (183)
T cd01453 3 MRHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLTGNPRKHIQALKTAREC 82 (183)
T ss_pred eeEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCCCCHHHHHHHhhcccCC
Confidence 56899999999999999999999999999999999999999999999999995444899999999999999999987 66
Q ss_pred cCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 015559 82 GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 161 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~ 161 (404)
.|+++|..||++|...|+++. ....++||||+++..++++.++..+++++++++|+|++|+||.+. +.|+++++.
T Consensus 83 ~G~t~l~~aL~~A~~~l~~~~-~~~~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~~----~~L~~ia~~ 157 (183)
T cd01453 83 SGEPSLQNGLEMALESLKHMP-SHGSREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAEM----HICKEICKA 157 (183)
T ss_pred CCchhHHHHHHHHHHHHhcCC-ccCceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechHH----HHHHHHHHH
Confidence 788999999999999999853 233466777777655567778888999999999999999999765 589999988
Q ss_pred hcCCCCcEEEEeCCCCchhhhhhh
Q 015559 162 VNNNDSSHLVHVPPGPNALSDVLL 185 (404)
Q Consensus 162 vn~~d~Shlv~vp~g~~lLsD~l~ 185 (404)
+ +|+||.+..+. -|.+++.
T Consensus 158 t---gG~~~~~~~~~--~l~~~~~ 176 (183)
T cd01453 158 T---NGTYKVILDET--HLKELLL 176 (183)
T ss_pred h---CCeeEeeCCHH--HHHHHHH
Confidence 7 56777665543 3666553
No 7
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=99.94 E-value=2.1e-26 Score=225.42 Aligned_cols=179 Identities=15% Similarity=0.237 Sum_probs=158.0
Q ss_pred cceEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc-cc
Q 015559 3 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL-EI 81 (404)
Q Consensus 3 lEa~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l-~~ 81 (404)
+..++|+||+|++|...||.|+|+.-+.+++..||.+||+|||++|+|||.|++..+...+.+.+|+..++..|..+ .|
T Consensus 87 iRhl~l~lD~Seam~e~Df~p~r~a~vikya~~Fv~eFf~qNPiSqlsii~irdg~a~~~s~~~gnpq~hi~~lkS~rd~ 166 (421)
T COG5151 87 IRHLHLILDVSEAMDESDFLPTRRANVIKYAEGFVPEFFSQNPISQLSIISIRDGCAKYTSSMDGNPQAHIGQLKSKRDC 166 (421)
T ss_pred hheeEEEEEhhhhhhhhhccchHHHHHHHHHHHHhHHHhccCCchheeeeehhhhHHHHhhhcCCCHHHHHHHhhccccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998 79
Q ss_pred cCCCcHHHHHHHHHHHhhhcCCCCCCeE-EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015559 82 GGELNLAAGIQVAQLALKHRQNKKQQQR-IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~~k~~~~R-IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~ 160 (404)
.|+++|+|||++|+..|-| +..|..| |+|++||..+.||+++.+++.+|...+|+|.+||+.+++ .||+.+|+
T Consensus 167 ~gnfSLqNaLEmar~~l~~--~~~H~trEvLiifgS~st~DPgdi~~tid~Lv~~~IrV~~igL~aev----aicKeick 240 (421)
T COG5151 167 SGNFSLQNALEMARIELMK--NTMHGTREVLIIFGSTSTRDPGDIAETIDKLVAYNIRVHFIGLCAEV----AICKEICK 240 (421)
T ss_pred CCChhHHhHHHHhhhhhcc--cccccceEEEEEEeecccCCCccHHHHHHHHHhhceEEEEEeehhHH----HHHHHHHh
Confidence 9999999999999988877 4556445 555568888889999999999999999999999999988 69999999
Q ss_pred HhcCCC-CcEEEEeCCCCchhhhhhhcCcc
Q 015559 161 AVNNND-SSHLVHVPPGPNALSDVLLSTPI 189 (404)
Q Consensus 161 ~vn~~d-~Shlv~vp~g~~lLsD~l~sspi 189 (404)
++|+++ +-|+|.|..+ | |++.+..+.+
T Consensus 241 aTn~~~e~~y~v~vde~-H-l~el~~E~~~ 268 (421)
T COG5151 241 ATNSSTEGRYYVPVDEG-H-LSELMRELSH 268 (421)
T ss_pred hcCcCcCceeEeeecHH-H-HHHHHHhcCC
Confidence 999876 5566666665 4 6666655433
No 8
>PRK13685 hypothetical protein; Provisional
Probab=99.81 E-value=1.2e-18 Score=173.08 Aligned_cols=161 Identities=22% Similarity=0.320 Sum_probs=133.4
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCC
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGE 84 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~~G~ 84 (404)
.+|||||.|.||...|+.|+||+.++.++..|++. .+|..+||||+|++. +.+++|+|.|+..+...|+.+.++|.
T Consensus 90 ~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~---l~~~d~vglv~Fa~~-a~~~~p~t~d~~~l~~~l~~l~~~~~ 165 (326)
T PRK13685 90 VVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADE---LTPGINLGLIAFAGT-ATVLVSPTTNREATKNAIDKLQLADR 165 (326)
T ss_pred eEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHh---CCCCCeEEEEEEcCc-eeecCCCCCCHHHHHHHHHhCCCCCC
Confidence 58999999999999999999999999999999985 467899999999998 69999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhhhc------CCCCCCeEEEEEEcCCCCCC-----hhHHHHHHHHHHhCCceEEEEEeCCCC-----
Q 015559 85 LNLAAGIQVAQLALKHR------QNKKQQQRIIVFVGSPIKHE-----KKVLEMIGRKLKKNSVALDIVNFGEDD----- 148 (404)
Q Consensus 85 ~sL~~gL~iA~lALKhr------~~k~~~~RIVlFvgSp~~~d-----~~~l~~~ak~LKknnI~VdiI~fG~e~----- 148 (404)
++++.+|..|...++.. ......++||+|+++..+.. +.....+++.+++.+|+|++||||...
T Consensus 166 T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~ 245 (326)
T PRK13685 166 TATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEI 245 (326)
T ss_pred cchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcCc
Confidence 99999999999877521 01224567999988765532 234567889999999999999999852
Q ss_pred -------CCcHHHHHHHHHHhcCCCCcEEEE
Q 015559 149 -------EGNTEKLEALLAAVNNNDSSHLVH 172 (404)
Q Consensus 149 -------~~n~~~L~~~~~~vn~~d~Shlv~ 172 (404)
.-+.+.|+++.+.+ +|.||..
T Consensus 246 ~g~~~~~~~d~~~L~~iA~~t---gG~~~~~ 273 (326)
T PRK13685 246 NGQRQPVPVDDESLKKIAQLS---GGEFYTA 273 (326)
T ss_pred CCceeeecCCHHHHHHHHHhc---CCEEEEc
Confidence 12567899999777 3455543
No 9
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=99.78 E-value=1.4e-17 Score=144.40 Aligned_cols=164 Identities=24% Similarity=0.354 Sum_probs=127.7
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccc----
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEI---- 81 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~---- 81 (404)
+|||||+|.||...|..++|+..++.++..|+..+ |.++|||+.|.+. +.++.++|.|+..+...|.++.+
T Consensus 2 vv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~l~~f~~~-~~~~~~~t~~~~~~~~~l~~~~~~~~~ 76 (172)
T PF13519_consen 2 VVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANL----PGDRVGLVSFSDS-SRTLSPLTSDKDELKNALNKLSPQGMP 76 (172)
T ss_dssp EEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHH----TTSEEEEEEESTS-CEEEEEEESSHHHHHHHHHTHHHHG--
T ss_pred EEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHC----CCCEEEEEEeccc-ccccccccccHHHHHHHhhcccccccC
Confidence 79999999999999999999999999999999973 7889999999997 59999999999999999998865
Q ss_pred cCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 015559 82 GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 161 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~ 161 (404)
.|.+.+..||+.|...|... +..++.||+|.++. +..+..++++.+++.+|+|++|+||... ...+.|+.+++.
T Consensus 77 ~~~t~~~~al~~a~~~~~~~--~~~~~~iv~iTDG~---~~~~~~~~~~~~~~~~i~i~~v~~~~~~-~~~~~l~~la~~ 150 (172)
T PF13519_consen 77 GGGTNLYDALQEAAKMLASS--DNRRRAIVLITDGE---DNSSDIEAAKALKQQGITIYTVGIGSDS-DANEFLQRLAEA 150 (172)
T ss_dssp SSS--HHHHHHHHHHHHHC---SSEEEEEEEEES-T---THCHHHHHHHHHHCTTEEEEEEEES-TT--EHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHhC--CCCceEEEEecCCC---CCcchhHHHHHHHHcCCeEEEEEECCCc-cHHHHHHHHHHh
Confidence 68899999999999999763 22444455555543 2255557999999999999999999988 556899999988
Q ss_pred hcCCCCcEEEEeCCCCchhhhhh
Q 015559 162 VNNNDSSHLVHVPPGPNALSDVL 184 (404)
Q Consensus 162 vn~~d~Shlv~vp~g~~lLsD~l 184 (404)
+++ +|+.+-..+.-|.+++
T Consensus 151 tgG----~~~~~~~~~~~l~~~~ 169 (172)
T PF13519_consen 151 TGG----RYFHVDNDPEDLDDAF 169 (172)
T ss_dssp TEE----EEEEE-SSSHHHHHHH
T ss_pred cCC----EEEEecCCHHHHHHHH
Confidence 853 6667633334466654
No 10
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.74 E-value=2.4e-16 Score=140.85 Aligned_cols=151 Identities=17% Similarity=0.228 Sum_probs=122.4
Q ss_pred eEEEEEeCChhhhCCCC-CCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcc---
Q 015559 5 ATLICIDNSEWMRNGDY-APSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLE--- 80 (404)
Q Consensus 5 a~vIvIDnSesMrngD~-~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~--- 80 (404)
.++||||.|.||...|+ .|+|+..++.++..|+. ..|..+||||+|.+. +.+++++|.+...+...|+.+.
T Consensus 4 ~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~----~~~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~l~~l~~~~ 78 (180)
T cd01467 4 DIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFID----RRENDRIGLVVFAGA-AFTQAPLTLDRESLKELLEDIKIGL 78 (180)
T ss_pred eEEEEEECCcccccccCCCCCHHHHHHHHHHHHHH----hCCCCeEEEEEEcCC-eeeccCCCccHHHHHHHHHHhhhcc
Confidence 47999999999999998 68999999998887776 457899999999886 5889999999988887777764
Q ss_pred ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC----------CCC
Q 015559 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED----------DEG 150 (404)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e----------~~~ 150 (404)
++|.+++..||..|...|... +..++.||||.++..+.........++.+++.+|.|++|+||.. . .
T Consensus 79 ~~g~T~l~~al~~a~~~l~~~--~~~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~~~~~~~~~~~~~-~ 155 (180)
T cd01467 79 AGQGTAIGDAIGLAIKRLKNS--EAKERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGKSGSGPKPDGSTI-L 155 (180)
T ss_pred cCCCCcHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCCCCCcCCCCccc-C
Confidence 678999999999999888653 33456788887776554444456667788889999999999983 2 3
Q ss_pred cHHHHHHHHHHhc
Q 015559 151 NTEKLEALLAAVN 163 (404)
Q Consensus 151 n~~~L~~~~~~vn 163 (404)
....|+.|.+.++
T Consensus 156 ~~~~l~~la~~tg 168 (180)
T cd01467 156 DEDSLVEIADKTG 168 (180)
T ss_pred CHHHHHHHHHhcC
Confidence 4678999997774
No 11
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.72 E-value=7.4e-16 Score=135.71 Aligned_cols=153 Identities=21% Similarity=0.322 Sum_probs=123.1
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcCcccc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHGLEIG 82 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT--~D~~kils~L~~l~~~ 82 (404)
.++||||+|.||... ||+.++.++..++.. .++..+|||++|++. +.++++++ .++..++..|..+.++
T Consensus 2 ~~~~vlD~S~SM~~~-----~~~~~k~a~~~~~~~---l~~~~~v~li~f~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~ 72 (170)
T cd01465 2 NLVFVIDRSGSMDGP-----KLPLVKSALKLLVDQ---LRPDDRLAIVTYDGA-AETVLPATPVRDKAAILAAIDRLTAG 72 (170)
T ss_pred cEEEEEECCCCCCCh-----hHHHHHHHHHHHHHh---CCCCCEEEEEEecCC-ccEEecCcccchHHHHHHHHHcCCCC
Confidence 478999999999743 688999999988885 577889999999997 58887766 5788889999999999
Q ss_pred CCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCC---hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 015559 83 GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHE---KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 159 (404)
Q Consensus 83 G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d---~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~ 159 (404)
|.+++..+|+.|...++++..+...++||||+++..+++ ...+...++++++.+|.|++|+||. . .+...|+.|+
T Consensus 73 g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~-~-~~~~~l~~ia 150 (170)
T cd01465 73 GSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGD-N-YNEDLMEAIA 150 (170)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCC-C-cCHHHHHHHH
Confidence 999999999999998876533333477999988876543 4667788888999999999999994 3 5788999998
Q ss_pred HHhcCCCCcEEE
Q 015559 160 AAVNNNDSSHLV 171 (404)
Q Consensus 160 ~~vn~~d~Shlv 171 (404)
... ++.|+.
T Consensus 151 ~~~---~g~~~~ 159 (170)
T cd01465 151 DAG---NGNTAY 159 (170)
T ss_pred hcC---CceEEE
Confidence 533 444443
No 12
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=99.69 E-value=2.4e-15 Score=136.16 Aligned_cols=151 Identities=19% Similarity=0.217 Sum_probs=123.1
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCCC
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEL 85 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~~G~~ 85 (404)
++||||.|.||..+ +||..++.++..|+...+ ++..+||||+|.++.+.+++++|.+...+...|..+.++|.+
T Consensus 3 v~lvlD~SgSM~~~----~rl~~ak~a~~~~~~~~~--~~~d~v~lv~F~~~~~~~~~~~t~~~~~~~~~l~~l~~~G~T 76 (178)
T cd01451 3 VIFVVDASGSMAAR----HRMAAAKGAVLSLLRDAY--QRRDKVALIAFRGTEAEVLLPPTRSVELAKRRLARLPTGGGT 76 (178)
T ss_pred EEEEEECCccCCCc----cHHHHHHHHHHHHHHHhh--cCCCEEEEEEECCCCceEEeCCCCCHHHHHHHHHhCCCCCCC
Confidence 78999999999753 799999999999987533 468899999999875789999999999999999999999999
Q ss_pred cHHHHHHHHHHHhhhc-CCCCCCeEEEEEEcCCCCC--Ch-hHH-HHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015559 86 NLAAGIQVAQLALKHR-QNKKQQQRIIVFVGSPIKH--EK-KVL-EMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (404)
Q Consensus 86 sL~~gL~iA~lALKhr-~~k~~~~RIVlFvgSp~~~--d~-~~l-~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~ 160 (404)
+|..||..|...|+.+ ..+..+++||||.++..++ ++ ... ..+++++++.+|.|.+|++|... .+...|+.+.+
T Consensus 77 ~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~-~~~~~l~~iA~ 155 (178)
T cd01451 77 PLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRP-VRRGLAKDLAR 155 (178)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCc-cCccHHHHHHH
Confidence 9999999999888321 1222356788888776553 22 233 67899999999999999999865 46779999998
Q ss_pred Hhc
Q 015559 161 AVN 163 (404)
Q Consensus 161 ~vn 163 (404)
.++
T Consensus 156 ~tg 158 (178)
T cd01451 156 ALG 158 (178)
T ss_pred HcC
Confidence 774
No 13
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=99.65 E-value=3.5e-15 Score=139.61 Aligned_cols=145 Identities=19% Similarity=0.281 Sum_probs=116.9
Q ss_pred ceEEEEEeCChhhhCC-CC-CCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc---------cEEEECC-CCCHHH
Q 015559 4 EATLICIDNSEWMRNG-DY-APSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG---------VRVLVTP-TSDLGK 71 (404)
Q Consensus 4 Ea~vIvIDnSesMrng-D~-~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~---------a~VLvtl-T~D~~k 71 (404)
|+++||||+|.||... |. .|+||+.++.++..|++.|.-.+|..+||||.|+... ..++.+| |.+...
T Consensus 2 e~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l~~~~~~~ 81 (218)
T cd01458 2 ESVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLDLDTPGAER 81 (218)
T ss_pred cEEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeecCCCCCHHH
Confidence 8999999999999855 33 4999999999999999998889999999999999863 2366777 666655
Q ss_pred HHHHhcCccc-----------cCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC-----ChhHHHHHHHHHHhC
Q 015559 72 ILACMHGLEI-----------GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-----EKKVLEMIGRKLKKN 135 (404)
Q Consensus 72 ils~L~~l~~-----------~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~-----d~~~l~~~ak~LKkn 135 (404)
+...+..+.+ .++++|..||.+|...|.+...+...+|||+|+.+.... +...+.++++.|++.
T Consensus 82 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~ 161 (218)
T cd01458 82 VEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDK 161 (218)
T ss_pred HHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 5444433322 457999999999999998844455678999999865542 246678899999999
Q ss_pred CceEEEEEeCCCC
Q 015559 136 SVALDIVNFGEDD 148 (404)
Q Consensus 136 nI~VdiI~fG~e~ 148 (404)
+|.|.+|++|...
T Consensus 162 gI~i~~i~i~~~~ 174 (218)
T cd01458 162 GIELELFPLSSPG 174 (218)
T ss_pred CcEEEEEecCCCC
Confidence 9999999999976
No 14
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.65 E-value=9.5e-15 Score=129.65 Aligned_cols=153 Identities=15% Similarity=0.181 Sum_probs=121.2
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcCccc-c
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHGLEI-G 82 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT--~D~~kils~L~~l~~-~ 82 (404)
+||+||.|.||.. .+|..++.++..|+..+...+...+||||+|++. +.++.+++ .|...++..|..+.. +
T Consensus 3 vv~vlD~SgSm~~-----~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~ 76 (164)
T cd01472 3 IVFLVDGSESIGL-----SNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDD-PRTEFYLNTYRSKDDVLEAVKNLRYIG 76 (164)
T ss_pred EEEEEeCCCCCCH-----HHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCc-eeEEEecCCCCCHHHHHHHHHhCcCCC
Confidence 7899999999974 6889999999999998765566789999999987 68889999 899999999999976 6
Q ss_pred CCCcHHHHHHHHHHHhhhc---CCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 015559 83 GELNLAAGIQVAQLALKHR---QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 159 (404)
Q Consensus 83 G~~sL~~gL~iA~lALKhr---~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~ 159 (404)
|.+++..||..|...|... ..++.++.||+|.++..+ ......+..+++.+|.|++||+|.. +...|+.++
T Consensus 77 g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~---~~~~~~~~~l~~~gv~i~~ig~g~~---~~~~L~~ia 150 (164)
T cd01472 77 GGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQ---DDVEEPAVELKQAGIEVFAVGVKNA---DEEELKQIA 150 (164)
T ss_pred CCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCC---chHHHHHHHHHHCCCEEEEEECCcC---CHHHHHHHH
Confidence 7899999999999988752 223455566777666322 2345567789999999999999984 567899887
Q ss_pred HHhcCCCCcEEEEe
Q 015559 160 AAVNNNDSSHLVHV 173 (404)
Q Consensus 160 ~~vn~~d~Shlv~v 173 (404)
.. +++.|...+
T Consensus 151 ~~---~~~~~~~~~ 161 (164)
T cd01472 151 SD---PKELYVFNV 161 (164)
T ss_pred CC---CchheEEec
Confidence 33 345566543
No 15
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.63 E-value=7.9e-15 Score=130.28 Aligned_cols=148 Identities=16% Similarity=0.261 Sum_probs=115.4
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC----CHHHHHHHhcCccc
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS----DLGKILACMHGLEI 81 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~----D~~kils~L~~l~~ 81 (404)
++|+||.|.||.. +||..++.++..+++. .++..+||||+|++. ++++.++|. +...+...|..+.+
T Consensus 3 v~~vlD~S~SM~~-----~rl~~ak~a~~~l~~~---l~~~~~~~li~F~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~ 73 (155)
T cd01466 3 LVAVLDVSGSMAG-----DKLQLVKHALRFVISS---LGDADRLSIVTFSTS-AKRLSPLRRMTAKGKRSAKRVVDGLQA 73 (155)
T ss_pred EEEEEECCCCCCc-----HHHHHHHHHHHHHHHh---CCCcceEEEEEecCC-ccccCCCcccCHHHHHHHHHHHHhccC
Confidence 6899999999974 3999999999988875 346689999999997 688888873 45677888889999
Q ss_pred cCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 015559 82 GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 161 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~ 161 (404)
+|++++..||+.|...|+.+..++..++|||+.++..+.. ....++++.+|.|++||||... +.+.|+.+.+.
T Consensus 74 ~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~~-----~~~~~~~~~~v~v~~igig~~~--~~~~l~~iA~~ 146 (155)
T cd01466 74 GGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHG-----AVVLRADNAPIPIHTFGLGASH--DPALLAFIAEI 146 (155)
T ss_pred CCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCcc-----hhhhcccCCCceEEEEecCCCC--CHHHHHHHHhc
Confidence 9999999999999999876544455678888887754332 2233466789999999999754 56789999876
Q ss_pred hcCCCCcEEE
Q 015559 162 VNNNDSSHLV 171 (404)
Q Consensus 162 vn~~d~Shlv 171 (404)
++ +..|||
T Consensus 147 t~--G~~~~~ 154 (155)
T cd01466 147 TG--GTFSYV 154 (155)
T ss_pred cC--ceEEEe
Confidence 63 344544
No 16
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.63 E-value=2.1e-14 Score=131.17 Aligned_cols=146 Identities=16% Similarity=0.175 Sum_probs=119.8
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhcc------CCcCCeEEEEEecCCccEEEECCC---CCHHHHHHH
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQ------LNPENTVGVMTMAGKGVRVLVTPT---SDLGKILAC 75 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~------~NPesqVGLVtmag~~a~VLvtlT---~D~~kils~ 75 (404)
-++|+||.|.||.. ++|+.++.++..|++.+.. .+...+||||+|++. +.+..++| .+...++.+
T Consensus 4 dvv~vlD~S~Sm~~-----~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~-~~~~~~l~~~~~~~~~l~~~ 77 (186)
T cd01480 4 DITFVLDSSESVGL-----QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQ-QEVEAGFLRDIRNYTSLKEA 77 (186)
T ss_pred eEEEEEeCCCccch-----hhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCC-ceeeEecccccCCHHHHHHH
Confidence 47999999999974 6788889999999998854 356689999999987 69999998 789999999
Q ss_pred hcCcc-ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHH
Q 015559 76 MHGLE-IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTE 153 (404)
Q Consensus 76 L~~l~-~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~ 153 (404)
|+.+. .+|.+++..||..|...|.....+..++.||||+++.... +...+.+.++.+|+.||.|++|++|. . |..
T Consensus 78 i~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~-~--~~~ 154 (186)
T cd01480 78 VDNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS-Q--NEE 154 (186)
T ss_pred HHhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc-c--chH
Confidence 99997 5889999999999998887522345667788888776532 35578889999999999999999998 3 456
Q ss_pred HHHHHH
Q 015559 154 KLEALL 159 (404)
Q Consensus 154 ~L~~~~ 159 (404)
.|+.+.
T Consensus 155 ~L~~IA 160 (186)
T cd01480 155 PLSRIA 160 (186)
T ss_pred HHHHHH
Confidence 677776
No 17
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.62 E-value=2e-14 Score=132.83 Aligned_cols=150 Identities=25% Similarity=0.343 Sum_probs=116.7
Q ss_pred ceEEEEEeCChhhhC-CCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc-----cEEEE---CCC--------
Q 015559 4 EATLICIDNSEWMRN-GDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG-----VRVLV---TPT-------- 66 (404)
Q Consensus 4 Ea~vIvIDnSesMrn-gD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~-----a~VLv---tlT-------- 66 (404)
-.++||||+|.||.. .+-.++||...+.++..|+.. .+|..+|||++|++.. ..+++ +++
T Consensus 21 ~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~---l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 97 (206)
T cd01456 21 PNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANA---LPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNGFPS 97 (206)
T ss_pred CcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHh---CCCCceEEEEEecCCCCCCccccccccccccccccCCCCc
Confidence 358999999999984 445689999999999999986 4578999999999842 23333 222
Q ss_pred CCHHHHHHHhcCcc-ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhC-----CceEE
Q 015559 67 SDLGKILACMHGLE-IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKN-----SVALD 140 (404)
Q Consensus 67 ~D~~kils~L~~l~-~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKkn-----nI~Vd 140 (404)
.+...+...|..+. +.|+++|..||+.|...|. +....+||||+++..++.. +....++.+.+. +|+|+
T Consensus 98 ~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~----~~~~~~iillTDG~~~~~~-~~~~~~~~~~~~~~~~~~i~i~ 172 (206)
T cd01456 98 AQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD----PGRVNVVVLITDGEDTCGP-DPCEVARELAKRRTPAPPIKVN 172 (206)
T ss_pred ccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC----CCCcceEEEEcCCCccCCC-CHHHHHHHHHHhcCCCCCceEE
Confidence 47788899999998 9999999999999998885 1233688888888665543 444556666554 99999
Q ss_pred EEEeCCCCCCcHHHHHHHHHHhc
Q 015559 141 IVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 141 iI~fG~e~~~n~~~L~~~~~~vn 163 (404)
+|+||... +...|+.+.+.++
T Consensus 173 ~igiG~~~--~~~~l~~iA~~tg 193 (206)
T cd01456 173 VIDFGGDA--DRAELEAIAEATG 193 (206)
T ss_pred EEEecCcc--cHHHHHHHHHhcC
Confidence 99999864 5689999997774
No 18
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.60 E-value=7.1e-14 Score=117.72 Aligned_cols=150 Identities=21% Similarity=0.392 Sum_probs=127.3
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC--CHHHHHHHhcCcc--
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS--DLGKILACMHGLE-- 80 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~--D~~kils~L~~l~-- 80 (404)
.++|+||.|.|| .++||...+.++..++..+...++..++||+.|.+. ..++.+++. +...+...+..+.
T Consensus 2 ~v~~viD~S~Sm-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (161)
T cd00198 2 DIVFLLDVSGSM-----GGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSN-ARVVLPLTTDTDKADLLEAIDALKKG 75 (161)
T ss_pred cEEEEEeCCCCc-----CcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCc-cceeecccccCCHHHHHHHHHhcccC
Confidence 589999999999 679999999999999999888888999999999986 588888886 8888888888886
Q ss_pred ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015559 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (404)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~ 160 (404)
.+|.+++..+|..+...+.+...+...++||+|.++........+....+++++++|.|.+|++|.. .+...|+.|+.
T Consensus 76 ~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~~g~~--~~~~~l~~l~~ 153 (161)
T cd00198 76 LGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGIGDD--ANEDELKEIAD 153 (161)
T ss_pred CCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEEcCCC--CCHHHHHHHhc
Confidence 6789999999999999998753345666788888777655555788999999999999999999983 45678888886
Q ss_pred Hh
Q 015559 161 AV 162 (404)
Q Consensus 161 ~v 162 (404)
..
T Consensus 154 ~~ 155 (161)
T cd00198 154 KT 155 (161)
T ss_pred cc
Confidence 55
No 19
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=99.60 E-value=6.7e-14 Score=136.03 Aligned_cols=156 Identities=23% Similarity=0.239 Sum_probs=123.6
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccc---
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEI--- 81 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~--- 81 (404)
.++||||+|.||. .++...+.++..|+...+ .|..+||||+|.+. +.++.++|.|+..+..+|..+.+
T Consensus 55 ~vvlvlD~SgSM~------~~~~~a~~a~~~~l~~~l--~~~d~v~lv~f~~~-~~~~~~~t~~~~~l~~~l~~l~~~~~ 125 (296)
T TIGR03436 55 TVGLVIDTSGSMR------NDLDRARAAAIRFLKTVL--RPNDRVFVVTFNTR-LRLLQDFTSDPRLLEAALNRLKPPLR 125 (296)
T ss_pred eEEEEEECCCCch------HHHHHHHHHHHHHHHhhC--CCCCEEEEEEeCCc-eeEeecCCCCHHHHHHHHHhccCCCc
Confidence 6899999999997 368888999999998744 58999999999986 68999999999999999999977
Q ss_pred ------------cCCCcHHHHHHHHHH-HhhhcCC-CCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 82 ------------GGELNLAAGIQVAQL-ALKHRQN-KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 82 ------------~G~~sL~~gL~iA~l-ALKhr~~-k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
+|+++|..||..|.+ .++.... ...++.||+|+++..+.....+..+++.|++++|.|++|+||..
T Consensus 126 ~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~~~~~~~~~~~~~~~~~~v~vy~I~~~~~ 205 (296)
T TIGR03436 126 TDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDNRSRDTLERAIDAAQRADVAIYSIDARGL 205 (296)
T ss_pred cccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEeccCcc
Confidence 799999999987754 3333211 11456688887776555667788999999999999999999854
Q ss_pred CC-----------CcHHHHHHHHHHhcCCCCcEEEE
Q 015559 148 DE-----------GNTEKLEALLAAVNNNDSSHLVH 172 (404)
Q Consensus 148 ~~-----------~n~~~L~~~~~~vn~~d~Shlv~ 172 (404)
.. .+.+.|+.|++.++ |.+|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~L~~iA~~TG---G~~~~~ 238 (296)
T TIGR03436 206 RAPDLGAGAKAGLGGPEALERLAEETG---GRAFYV 238 (296)
T ss_pred ccCCcccccccCCCcHHHHHHHHHHhC---CeEecc
Confidence 20 14679999998884 445544
No 20
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.58 E-value=1.4e-13 Score=119.89 Aligned_cols=149 Identities=23% Similarity=0.316 Sum_probs=123.8
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECC--CCCHHHHHHHhcCccc-
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTP--TSDLGKILACMHGLEI- 81 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtl--T~D~~kils~L~~l~~- 81 (404)
.++||||+|.||. ++||.+++.++..|+..+...++..+|||++|.+. ...+.++ +.+...+...+..+.+
T Consensus 3 ~v~l~vD~S~SM~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~ 76 (177)
T smart00327 3 DVVFLLDGSGSMG-----PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDD-ATVLFPLNDSRSKDALLEALASLSYK 76 (177)
T ss_pred cEEEEEeCCCccc-----hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCC-ceEEEcccccCCHHHHHHHHHhcCCC
Confidence 4799999999997 78999999999999999999999999999999986 5778887 8999999999999985
Q ss_pred -cCCCcHHHHHHHHHHHhhhcC---CCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHH
Q 015559 82 -GGELNLAAGIQVAQLALKHRQ---NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEA 157 (404)
Q Consensus 82 -~G~~sL~~gL~iA~lALKhr~---~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~ 157 (404)
.|.+++..+|..|...+.++. ....++.||+|.++... +...+...++++++++|.|++|+||... +...|+.
T Consensus 77 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~-~~~~~~~~~~~~~~~~i~i~~i~~~~~~--~~~~l~~ 153 (177)
T smart00327 77 LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESN-DGGDLLKAAKELKRSGVKVFVVGVGNDV--DEEELKK 153 (177)
T ss_pred CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCC-CCccHHHHHHHHHHCCCEEEEEEccCcc--CHHHHHH
Confidence 788999999999999886322 12224566666555433 3368899999999999999999999753 5678999
Q ss_pred HHHHh
Q 015559 158 LLAAV 162 (404)
Q Consensus 158 ~~~~v 162 (404)
|....
T Consensus 154 ~~~~~ 158 (177)
T smart00327 154 LASAP 158 (177)
T ss_pred HhCCC
Confidence 98655
No 21
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=99.57 E-value=1.7e-13 Score=125.81 Aligned_cols=160 Identities=14% Similarity=0.213 Sum_probs=118.8
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC----CCHHHHHHHhcCcc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT----SDLGKILACMHGLE 80 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT----~D~~kils~L~~l~ 80 (404)
.++||||.|.||. ++||+.++.++..|++.+-...+..+||||+|++. +.++++++ .+...++..|..+.
T Consensus 2 di~~vlD~SgSM~-----~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 75 (198)
T cd01470 2 NIYIALDASDSIG-----EEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASD-PKEIVSIRDFNSNDADDVIKRLEDFN 75 (198)
T ss_pred cEEEEEECCCCcc-----HHHHHHHHHHHHHHHHHccccCCCceEEEEEecCC-ceEEEecccCCCCCHHHHHHHHHhCC
Confidence 3799999999995 67999999999999998655556889999999988 57777665 46788999998874
Q ss_pred -----ccCCCcHHHHHHHHHHHhhhcC------CCCCCeEEEEEEcCCCCC--ChhHHHHHHHHH----------HhCCc
Q 015559 81 -----IGGELNLAAGIQVAQLALKHRQ------NKKQQQRIIVFVGSPIKH--EKKVLEMIGRKL----------KKNSV 137 (404)
Q Consensus 81 -----~~G~~sL~~gL~iA~lALKhr~------~k~~~~RIVlFvgSp~~~--d~~~l~~~ak~L----------KknnI 137 (404)
.+|++++..||+.+...|.... ....++.||||+++..+. ++....+.++.+ |+.+|
T Consensus 76 ~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v 155 (198)
T cd01470 76 YDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSDNPREDYL 155 (198)
T ss_pred cccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChhHHHHHHHHHHhcccccccchhcce
Confidence 3478999999999987663110 122456788888876543 444444444444 56689
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHHhcCCCC-cEEEEeCC
Q 015559 138 ALDIVNFGEDDEGNTEKLEALLAAVNNNDS-SHLVHVPP 175 (404)
Q Consensus 138 ~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~-Shlv~vp~ 175 (404)
.|++||||... |.+.|+.+.... ++ .|+..+..
T Consensus 156 ~i~~iGvG~~~--~~~~L~~iA~~~---~g~~~~f~~~~ 189 (198)
T cd01470 156 DVYVFGVGDDV--NKEELNDLASKK---DNERHFFKLKD 189 (198)
T ss_pred eEEEEecCccc--CHHHHHHHhcCC---CCCceEEEeCC
Confidence 99999999865 578899987433 44 47777654
No 22
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=99.57 E-value=1.5e-13 Score=124.31 Aligned_cols=170 Identities=14% Similarity=0.157 Sum_probs=121.0
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC----CHHH---HHHHhcC
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS----DLGK---ILACMHG 78 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~----D~~k---ils~L~~ 78 (404)
++|+||.|.||... +||..++.++..|++.+--.++..+||||+|++. +.++++++. +... ++..|..
T Consensus 3 v~~vlD~SgSm~~~----~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~-~~~~~~l~~~~~~~~~~~~~~i~~l~~ 77 (186)
T cd01471 3 LYLLVDGSGSIGYS----NWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTN-AKELIRLSSPNSTNKDLALNAIRALLS 77 (186)
T ss_pred EEEEEeCCCCccch----hhHHHHHHHHHHHHHhcccCCCceEEEEEEecCC-ceEEEECCCccccchHHHHHHHHHHHh
Confidence 79999999999754 4789999999999998755566779999999987 588777664 4555 4444444
Q ss_pred c-cccCCCcHHHHHHHHHHHhhhc--CCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 015559 79 L-EIGGELNLAAGIQVAQLALKHR--QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKL 155 (404)
Q Consensus 79 l-~~~G~~sL~~gL~iA~lALKhr--~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L 155 (404)
. .++|.+++..||..|...|.+. ..+...+.||+|+++..+. .......+++|++.+|.|.+||||... |.+.|
T Consensus 78 ~~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~-~~~~~~~a~~l~~~gv~v~~igiG~~~--d~~~l 154 (186)
T cd01471 78 LYYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDS-KFRTLKEARKLRERGVIIAVLGVGQGV--NHEEN 154 (186)
T ss_pred CcCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCC-CcchhHHHHHHHHCCCEEEEEEeehhh--CHHHH
Confidence 3 4688999999999999888652 1234556777787776443 344557899999999999999999855 56778
Q ss_pred HHHHHHhcCCCCcEEEEeCCCCchhhhhh
Q 015559 156 EALLAAVNNNDSSHLVHVPPGPNALSDVL 184 (404)
Q Consensus 156 ~~~~~~vn~~d~Shlv~vp~g~~lLsD~l 184 (404)
+.|...-.+.+-|+.+...+=.+ |..+|
T Consensus 155 ~~ia~~~~~~~~~~~~~~~~~~~-~~~~~ 182 (186)
T cd01471 155 RSLVGCDPDDSPCPLYLQSSWSE-VQNVI 182 (186)
T ss_pred HHhcCCCCCCCCCCeeecCCHHH-HHHHh
Confidence 77753221223355555444333 44444
No 23
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.56 E-value=1.7e-13 Score=118.11 Aligned_cols=147 Identities=18% Similarity=0.233 Sum_probs=120.9
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCC--HHHHHHHhcCccc-c
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSD--LGKILACMHGLEI-G 82 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D--~~kils~L~~l~~-~ 82 (404)
++|+||+|.||.. .+|...+.++..|+..+...++..++||++|.++ +.+.++++.+ ..+++..|..+.. .
T Consensus 3 i~~llD~S~Sm~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~ 76 (161)
T cd01450 3 IVFLLDGSESVGP-----ENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDD-VRVEFSLNDYKSKDDLLKAVKNLKYLG 76 (161)
T ss_pred EEEEEeCCCCcCH-----HHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCC-ceEEEECCCCCCHHHHHHHHHhcccCC
Confidence 6899999999974 3999999999999999988889999999999987 6888888877 8888888888743 3
Q ss_pred C-CCcHHHHHHHHHHHhhhcC--CCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 015559 83 G-ELNLAAGIQVAQLALKHRQ--NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 159 (404)
Q Consensus 83 G-~~sL~~gL~iA~lALKhr~--~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~ 159 (404)
| .+++..||+.|...+..+. .+..++.||+|.++..+... ++..+++.+++++|.|++|++|. . +.+.|+.|.
T Consensus 77 ~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~-~~~~~~~~~~~~~v~v~~i~~g~-~--~~~~l~~la 152 (161)
T cd01450 77 GGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGG-DPKEAAAKLKDEGIKVFVVGVGP-A--DEEELREIA 152 (161)
T ss_pred CCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCc-chHHHHHHHHHCCCEEEEEeccc-c--CHHHHHHHh
Confidence 3 8999999999999887643 13456667777777654433 78999999999999999999998 3 457888887
Q ss_pred HHh
Q 015559 160 AAV 162 (404)
Q Consensus 160 ~~v 162 (404)
...
T Consensus 153 ~~~ 155 (161)
T cd01450 153 SCP 155 (161)
T ss_pred CCC
Confidence 544
No 24
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.56 E-value=2.7e-13 Score=119.23 Aligned_cols=155 Identities=16% Similarity=0.192 Sum_probs=118.8
Q ss_pred ceEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--C---CHHHHHHHhcC
Q 015559 4 EATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--S---DLGKILACMHG 78 (404)
Q Consensus 4 Ea~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT--~---D~~kils~L~~ 78 (404)
-.++||||.|.||. ..||+..+.++..|+.. .++..+|+|++|+++ +..+.+++ . +....+..|..
T Consensus 3 ~~v~~vlD~S~SM~-----~~~~~~~~~al~~~l~~---l~~~~~~~l~~Fs~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 73 (171)
T cd01461 3 KEVVFVIDTSGSMS-----GTKIEQTKEALLTALKD---LPPGDYFNIIGFSDT-VEEFSPSSVSATAENVAAAIEYVNR 73 (171)
T ss_pred ceEEEEEECCCCCC-----ChhHHHHHHHHHHHHHh---CCCCCEEEEEEeCCC-ceeecCcceeCCHHHHHHHHHHHHh
Confidence 35889999999996 35799999999988875 456779999999987 45554432 2 33456777788
Q ss_pred ccccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015559 79 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (404)
Q Consensus 79 l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~ 158 (404)
+.++|++++..||..|...|+.. +...+.||+|.++.. .++.++.+.++++.+.+|+|++|+||... |...|+.+
T Consensus 74 ~~~~g~T~l~~al~~a~~~l~~~--~~~~~~iillTDG~~-~~~~~~~~~~~~~~~~~i~i~~i~~g~~~--~~~~l~~i 148 (171)
T cd01461 74 LQALGGTNMNDALEAALELLNSS--PGSVPQIILLTDGEV-TNESQILKNVREALSGRIRLFTFGIGSDV--NTYLLERL 148 (171)
T ss_pred cCCCCCcCHHHHHHHHHHhhccC--CCCccEEEEEeCCCC-CCHHHHHHHHHHhcCCCceEEEEEeCCcc--CHHHHHHH
Confidence 88899999999999999888652 345667888888763 45667888888888889999999999865 46799999
Q ss_pred HHHhcCCCCcEEEEeCCC
Q 015559 159 LAAVNNNDSSHLVHVPPG 176 (404)
Q Consensus 159 ~~~vn~~d~Shlv~vp~g 176 (404)
++.++ | .|+.|...
T Consensus 149 a~~~g---G-~~~~~~~~ 162 (171)
T cd01461 149 AREGR---G-IARRIYET 162 (171)
T ss_pred HHcCC---C-eEEEecCh
Confidence 87663 3 44555543
No 25
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.56 E-value=1.8e-13 Score=124.95 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=112.2
Q ss_pred ceEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC---------CCHHHHHH
Q 015559 4 EATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT---------SDLGKILA 74 (404)
Q Consensus 4 Ea~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT---------~D~~kils 74 (404)
=.++||||.|.||.. +||+.++.++..|+.. .++..+||||+|++. +.++++++ .+...++.
T Consensus 14 ~~vv~llD~SgSM~~-----~~l~~ak~~~~~ll~~---l~~~d~v~lv~F~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (190)
T cd01463 14 KDIVILLDVSGSMTG-----QRLHLAKQTVSSILDT---LSDNDFFNIITFSNE-VNPVVPCFNDTLVQATTSNKKVLKE 84 (190)
T ss_pred ceEEEEEECCCCCCc-----HHHHHHHHHHHHHHHh---CCCCCEEEEEEeCCC-eeEEeeecccceEecCHHHHHHHHH
Confidence 358999999999963 6999999999999885 467889999999998 57777654 35678899
Q ss_pred HhcCccccCCCcHHHHHHHHHHHhhh---c----CCCCCCeEEEEEEcCCCCCChhHHHHHHHHHH--hCCceEEEEEeC
Q 015559 75 CMHGLEIGGELNLAAGIQVAQLALKH---R----QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLK--KNSVALDIVNFG 145 (404)
Q Consensus 75 ~L~~l~~~G~~sL~~gL~iA~lALKh---r----~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LK--knnI~VdiI~fG 145 (404)
.|..+.++|.+++..||+.|...|+. . ..+...+.||||+++..+. ...+....++.+ ..+|+|++||||
T Consensus 85 ~l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~-~~~~~~~~~~~~~~~~~v~i~tigiG 163 (190)
T cd01463 85 ALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPEN-YKEIFDKYNWDKNSEIPVRVFTYLIG 163 (190)
T ss_pred HHhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCc-HhHHHHHhcccccCCCcEEEEEEecC
Confidence 99999999999999999999988765 1 0123445688888776443 333332221111 126999999999
Q ss_pred CCCCCcHHHHHHHHHHhc
Q 015559 146 EDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 146 ~e~~~n~~~L~~~~~~vn 163 (404)
.+. .|...|+.+....+
T Consensus 164 ~~~-~d~~~L~~lA~~~~ 180 (190)
T cd01463 164 REV-TDRREIQWMACENK 180 (190)
T ss_pred Ccc-ccchHHHHHHhhcC
Confidence 986 46789999987663
No 26
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.55 E-value=4.4e-13 Score=119.55 Aligned_cols=154 Identities=14% Similarity=0.168 Sum_probs=118.6
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcCcc-cc
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHGLE-IG 82 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT--~D~~kils~L~~l~-~~ 82 (404)
++|+||.|.||.. .+|..++.++..|++.+.-.++..+||||+|++. +.+..+++ .+...++..|..+. ++
T Consensus 3 v~~vlD~S~Sm~~-----~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~-~~~~~~l~~~~~~~~l~~~l~~~~~~~ 76 (164)
T cd01482 3 IVFLVDGSWSIGR-----SNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDD-PRTEFDLNAYTSKEDVLAAIKNLPYKG 76 (164)
T ss_pred EEEEEeCCCCcCh-----hhHHHHHHHHHHHHhheeeCCCceEEEEEEECCC-eeEEEecCCCCCHHHHHHHHHhCcCCC
Confidence 7999999999964 5789999999999998755667899999999998 58888876 67778899998886 67
Q ss_pred CCCcHHHHHHHHHHHhhhc-C--CCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 015559 83 GELNLAAGIQVAQLALKHR-Q--NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 159 (404)
Q Consensus 83 G~~sL~~gL~iA~lALKhr-~--~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~ 159 (404)
|.+++..||..|...+..+ . .+..++.||||+++-.+ .++...++.||+.||.|++||+|.. +.+.|+.++
T Consensus 77 g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~---~~~~~~a~~lk~~gi~i~~ig~g~~---~~~~L~~ia 150 (164)
T cd01482 77 GNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQ---DDVELPARVLRNLGVNVFAVGVKDA---DESELKMIA 150 (164)
T ss_pred CCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCC---chHHHHHHHHHHCCCEEEEEecCcC---CHHHHHHHh
Confidence 8999999999887654221 1 13345557777666533 3567889999999999999999974 356777776
Q ss_pred HHhcCCCCcEEEEeC
Q 015559 160 AAVNNNDSSHLVHVP 174 (404)
Q Consensus 160 ~~vn~~d~Shlv~vp 174 (404)
.. ....|+..|.
T Consensus 151 ~~---~~~~~~~~~~ 162 (164)
T cd01482 151 SK---PSETHVFNVA 162 (164)
T ss_pred CC---CchheEEEcC
Confidence 33 3456777654
No 27
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=99.55 E-value=4.2e-13 Score=121.81 Aligned_cols=160 Identities=14% Similarity=0.177 Sum_probs=121.9
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC--CHHHHHHHhcCc-ccc
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS--DLGKILACMHGL-EIG 82 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~--D~~kils~L~~l-~~~ 82 (404)
++|+||.|.||. |.+|+.++.++..|++.+.-.++..+||||+|++. +.+..+++. +...++.++..+ ..+
T Consensus 3 i~fvlD~S~S~~-----~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~-~~~~~~l~~~~~~~~~~~~i~~~~~~~ 76 (177)
T cd01469 3 IVFVLDGSGSIY-----PDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSES-FRTEFTLNEYRTKEEPLSLVKHISQLL 76 (177)
T ss_pred EEEEEeCCCCCC-----HHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCc-eeEEEecCccCCHHHHHHHHHhCccCC
Confidence 789999999985 88999999999999999887777999999999998 688888883 455677778777 457
Q ss_pred CCCcHHHHHHHHHHHhhhc---CCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCC---cHHHHH
Q 015559 83 GELNLAAGIQVAQLALKHR---QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEG---NTEKLE 156 (404)
Q Consensus 83 G~~sL~~gL~iA~lALKhr---~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~---n~~~L~ 156 (404)
|.+++..||+.|...|-.. ..+..++.+|||+++.... ......+++.||++||.|++||+|... . +.+.|+
T Consensus 77 g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~-~~~~~~~~~~~k~~gv~v~~Vgvg~~~-~~~~~~~~L~ 154 (177)
T cd01469 77 GLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHD-DPLLKDVIPQAEREGIIRYAIGVGGHF-QRENSREELK 154 (177)
T ss_pred CCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCC-ccccHHHHHHHHHCCcEEEEEEecccc-cccccHHHHH
Confidence 7899999999998766211 1123555667776666543 333367888999999999999999865 2 245666
Q ss_pred HHHHHhcCCCCcEEEEeCCC
Q 015559 157 ALLAAVNNNDSSHLVHVPPG 176 (404)
Q Consensus 157 ~~~~~vn~~d~Shlv~vp~g 176 (404)
.++ ......|+..+..-
T Consensus 155 ~ia---s~p~~~h~f~~~~~ 171 (177)
T cd01469 155 TIA---SKPPEEHFFNVTDF 171 (177)
T ss_pred HHh---cCCcHHhEEEecCH
Confidence 664 33456798888653
No 28
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.54 E-value=3.4e-13 Score=144.38 Aligned_cols=167 Identities=19% Similarity=0.282 Sum_probs=134.3
Q ss_pred ceEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccC
Q 015559 4 EATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGG 83 (404)
Q Consensus 4 Ea~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~~G 83 (404)
-.++||||.|.||. + +||.++|.++..|+..-+ .+..+||||+|+|..++++++||.+...+...|..+..+|
T Consensus 402 ~~vvfvvD~SGSM~-~----~rl~~aK~a~~~ll~~ay--~~rD~v~lI~F~g~~a~~~lppT~~~~~~~~~L~~l~~gG 474 (584)
T PRK13406 402 TTTIFVVDASGSAA-L----HRLAEAKGAVELLLAEAY--VRRDQVALVAFRGRGAELLLPPTRSLVRAKRSLAGLPGGG 474 (584)
T ss_pred ccEEEEEECCCCCc-H----hHHHHHHHHHHHHHHhhc--CCCCEEEEEEECCCceeEEcCCCcCHHHHHHHHhcCCCCC
Confidence 36899999999994 2 599999999999997632 3678999999999888999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCC----------hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHH
Q 015559 84 ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHE----------KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTE 153 (404)
Q Consensus 84 ~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d----------~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~ 153 (404)
+|.|..||..|...++....+....+|||++++-.+.. ..+...+++++++.+|.+.+|.+|... ..
T Consensus 475 gTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~~---~~ 551 (584)
T PRK13406 475 GTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTSPRP---QP 551 (584)
T ss_pred CChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecCCCC---cH
Confidence 99999999999988765333445678899998877642 145678899999999999999999654 35
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCC-Cchhhhhh
Q 015559 154 KLEALLAAVNNNDSSHLVHVPPG-PNALSDVL 184 (404)
Q Consensus 154 ~L~~~~~~vn~~d~Shlv~vp~g-~~lLsD~l 184 (404)
.++.|++.+++ .|+.+|.- ..-|++++
T Consensus 552 ~~~~LA~~~gg----~y~~l~~~~a~~~~~~v 579 (584)
T PRK13406 552 QARALAEAMGA----RYLPLPRADAGRLSQAV 579 (584)
T ss_pred HHHHHHHhcCC----eEEECCCCCHHHHHHHH
Confidence 79999988843 56666653 23355544
No 29
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=99.53 E-value=7.8e-13 Score=120.34 Aligned_cols=154 Identities=12% Similarity=0.122 Sum_probs=111.5
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHh---cCccc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACM---HGLEI 81 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L---~~l~~ 81 (404)
.++|+||.|.||... .+. .+++++.++..+. .|..+||||+|++. +.++.+||.+...+..+| ..+.+
T Consensus 6 Dvv~llD~SgSm~~~--~~~----~~~~~~~l~~~~~--~~~~rvglv~Fs~~-~~~~~~l~~~~~~~~~~l~~l~~~~~ 76 (185)
T cd01474 6 DLYFVLDKSGSVAAN--WIE----IYDFVEQLVDRFN--SPGLRFSFITFSTR-ATKILPLTDDSSAIIKGLEVLKKVTP 76 (185)
T ss_pred eEEEEEeCcCchhhh--HHH----HHHHHHHHHHHcC--CCCcEEEEEEecCC-ceEEEeccccHHHHHHHHHHHhccCC
Confidence 479999999999742 122 3466777776653 47899999999987 799999999888776664 56667
Q ss_pred cCCCcHHHHHHHHHHHhh--hcCCCCCCeEEEEEEcCCCC-CChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015559 82 GGELNLAAGIQVAQLALK--HRQNKKQQQRIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lALK--hr~~k~~~~RIVlFvgSp~~-~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~ 158 (404)
+|.+.+..||+.|...|. ....+...+.||+|.++... .........++.++++||.|++||+|. .|...|+.+
T Consensus 77 ~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~~~~~~~a~~l~~~gv~i~~vgv~~---~~~~~L~~i 153 (185)
T cd01474 77 SGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHKYPEHEAKLSRKLGAIVYCVGVTD---FLKSQLINI 153 (185)
T ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCCcchHHHHHHHHHcCCEEEEEeech---hhHHHHHHH
Confidence 899999999999997663 22122233567777776653 234466778899999999999999954 355678887
Q ss_pred HHHhcCCCCcEEEEeCC
Q 015559 159 LAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 159 ~~~vn~~d~Shlv~vp~ 175 (404)
+. ...|+..+..
T Consensus 154 A~-----~~~~~f~~~~ 165 (185)
T cd01474 154 AD-----SKEYVFPVTS 165 (185)
T ss_pred hC-----CCCeeEecCc
Confidence 73 2246664443
No 30
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=99.53 E-value=3.5e-13 Score=131.84 Aligned_cols=170 Identities=15% Similarity=0.176 Sum_probs=127.5
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccc---
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEI--- 81 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~--- 81 (404)
-+|||||+|.||...|..|+||+ ++. ++..++.+.+..+|||+.|++. +.++.|+|.|+.. ..+++.+.+
T Consensus 62 qIvlaID~S~SM~~~~~~~~ale-ak~----lIs~al~~Le~g~vgVv~Fg~~-~~~v~Plt~d~~~-~a~~~~l~~~~f 134 (266)
T cd01460 62 QILIAIDDSKSMSENNSKKLALE-SLC----LVSKALTLLEVGQLGVCSFGED-VQILHPFDEQFSS-QSGPRILNQFTF 134 (266)
T ss_pred eEEEEEecchhcccccccccHHH-HHH----HHHHHHHhCcCCcEEEEEeCCC-ceEeCCCCCCchh-hHHHHHhCcccC
Confidence 47999999999999999999998 344 4444455778899999999997 7999999999998 667665543
Q ss_pred -cCCCcHHHHHHHHHHHhhhcCCCCCC----eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHH---
Q 015559 82 -GGELNLAAGIQVAQLALKHRQNKKQQ----QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTE--- 153 (404)
Q Consensus 82 -~G~~sL~~gL~iA~lALKhr~~k~~~----~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~--- 153 (404)
.++|++..+|..|...|..+....+. +-|||+++|-...+++....+++++++++|.|++|++=... .+..
T Consensus 135 ~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~-~~~SI~d 213 (266)
T cd01460 135 QQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPD-NKQSILD 213 (266)
T ss_pred CCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCC-CCCCccc
Confidence 36899999999999999754111122 44566666654467777777799999999999999997762 1111
Q ss_pred ------------HHHHHHHHhcCCCCcEEEEeCCC---Cchhhhhhh
Q 015559 154 ------------KLEALLAAVNNNDSSHLVHVPPG---PNALSDVLL 185 (404)
Q Consensus 154 ------------~L~~~~~~vn~~d~Shlv~vp~g---~~lLsD~l~ 185 (404)
+++.|.+.. ...|||+|..= |+.|+|+|-
T Consensus 214 ~~~~~~~~~~~~~l~~Yl~~f---pfpYy~~~~~~~~lp~~l~~~lr 257 (266)
T cd01460 214 IKVVSFKNDKSGVITPYLDEF---PFPYYVIVRDLNQLPSVLSDALR 257 (266)
T ss_pred ccccccCCCCccHHHHHHhcC---CCCeEEEecChhHhHHHHHHHHH
Confidence 455555433 67888888652 567888774
No 31
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=99.52 E-value=6.3e-13 Score=123.83 Aligned_cols=148 Identities=20% Similarity=0.325 Sum_probs=108.7
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccC--Cc----CCeEEEEEecCCccEEEECCCC--CHHHHHHHh
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQL--NP----ENTVGVMTMAGKGVRVLVTPTS--DLGKILACM 76 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~--NP----esqVGLVtmag~~a~VLvtlT~--D~~kils~L 76 (404)
-+||+||.|.||. |.||+..+..+..|+..+... +| ..+||||+|++. +.+..+|+. +...++.+|
T Consensus 21 DivfvlD~S~Sm~-----~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~-a~~~~~L~d~~~~~~~~~ai 94 (193)
T cd01477 21 DIVFVVDNSKGMT-----QGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSN-ATVVADLNDLQSFDDLYSQI 94 (193)
T ss_pred eEEEEEeCCCCcc-----hhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCc-eEEEEecccccCHHHHHHHH
Confidence 3799999999995 678999999998888865431 33 479999999997 799999983 445677777
Q ss_pred cC----ccccCCCcHHHHHHHHHHHhhh--cCCCCCCeE-EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC
Q 015559 77 HG----LEIGGELNLAAGIQVAQLALKH--RQNKKQQQR-IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE 149 (404)
Q Consensus 77 ~~----l~~~G~~sL~~gL~iA~lALKh--r~~k~~~~R-IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~ 149 (404)
+. +..+|+++++.||+.|...|+. +..+....| +|||+++.......+....+++||++||.|++||+|...
T Consensus 95 ~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVGiG~~~- 173 (193)
T cd01477 95 QGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITVAFTQDE- 173 (193)
T ss_pred HHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEEeCCCC-
Confidence 74 3355789999999999999873 111223345 566655433333356778899999999999999999865
Q ss_pred CcHHHHHHHHH
Q 015559 150 GNTEKLEALLA 160 (404)
Q Consensus 150 ~n~~~L~~~~~ 160 (404)
....++.+.+
T Consensus 174 -d~~~~~~L~~ 183 (193)
T cd01477 174 -SSNLLDKLGK 183 (193)
T ss_pred -CHHHHHHHHH
Confidence 2345666543
No 32
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.47 E-value=4.9e-12 Score=111.55 Aligned_cols=145 Identities=21% Similarity=0.274 Sum_probs=111.3
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCC-ccEEEECCC--CCHHHHHHHhcCccc-
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGK-GVRVLVTPT--SDLGKILACMHGLEI- 81 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~-~a~VLvtlT--~D~~kils~L~~l~~- 81 (404)
++|+||.|.||.. +|..+++++..++..+....+..+||||+|++. .+.+..+++ .++..++..|+.+..
T Consensus 3 v~~llD~S~Sm~~------~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~~~~~~l~~~i~~l~~~ 76 (163)
T cd01476 3 LLFVLDSSGSVRG------KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKHNDGEELLEKVDNLRFI 76 (163)
T ss_pred EEEEEeCCcchhh------hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCCCCHHHHHHHHHhCccC
Confidence 7899999999963 678889999999998776677899999999984 357777776 477789999999874
Q ss_pred cCCCcHHHHHHHHHHHhhhc--CCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHh-CCceEEEEEeCCCCCCcHHHHHHH
Q 015559 82 GGELNLAAGIQVAQLALKHR--QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKK-NSVALDIVNFGEDDEGNTEKLEAL 158 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr--~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKk-nnI~VdiI~fG~e~~~n~~~L~~~ 158 (404)
+|.+++..||..|...|... ..+..++.||||+++..+.+ ....++.|++ .+|.|+.|++|...+.|...|..+
T Consensus 77 gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~---~~~~~~~l~~~~~v~v~~vg~g~~~~~~~~~L~~i 153 (163)
T cd01476 77 GGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDD---PEKQARILRAVPNIETFAVGTGDPGTVDTEELHSI 153 (163)
T ss_pred CCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCc---hHHHHHHHhhcCCCEEEEEECCCccccCHHHHHHH
Confidence 67899999999999888521 12334566777777654433 4566778888 999999999998732355566665
Q ss_pred H
Q 015559 159 L 159 (404)
Q Consensus 159 ~ 159 (404)
.
T Consensus 154 a 154 (163)
T cd01476 154 T 154 (163)
T ss_pred h
Confidence 3
No 33
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=99.46 E-value=1.5e-12 Score=120.65 Aligned_cols=146 Identities=21% Similarity=0.265 Sum_probs=112.3
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC----CHHHHHHHhcCcc-
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS----DLGKILACMHGLE- 80 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~----D~~kils~L~~l~- 80 (404)
++|+||.|.||...+|.+.+.. .++.+++.+.-.....+||||.|++. +++.+++|. +...++.+|+.+.
T Consensus 3 i~fllD~S~Si~~~~f~~~~~~----f~~~lv~~l~i~~~~~rvgvv~fs~~-~~~~~~~~~~~~~~~~~l~~~i~~l~~ 77 (192)
T cd01473 3 LTLILDESASIGYSNWRKDVIP----FTEKIINNLNISKDKVHVGILLFAEK-NRDVVPFSDEERYDKNELLKKINDLKN 77 (192)
T ss_pred EEEEEeCCCcccHHHHHHHHHH----HHHHHHHhCccCCCccEEEEEEecCC-ceeEEecCcccccCHHHHHHHHHHHHh
Confidence 7899999999998888766544 56666666665667889999999987 699999885 4567778777663
Q ss_pred ---ccCCCcHHHHHHHHHHHhhhcCC--CCCCeEEEEEEcCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHH
Q 015559 81 ---IGGELNLAAGIQVAQLALKHRQN--KKQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEK 154 (404)
Q Consensus 81 ---~~G~~sL~~gL~iA~lALKhr~~--k~~~~RIVlFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~ 154 (404)
.+|.|++..||+.|...|....+ +..++-+|||++|.... +...+...++.||+.||.|++||+|... ...
T Consensus 78 ~~~~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~~---~~e 154 (192)
T cd01473 78 SYRSGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAAS---ENK 154 (192)
T ss_pred ccCCCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEecccc---HHH
Confidence 47899999999999877754222 12355577887877654 3557889999999999999999999855 346
Q ss_pred HHHHH
Q 015559 155 LEALL 159 (404)
Q Consensus 155 L~~~~ 159 (404)
|+.+.
T Consensus 155 l~~ia 159 (192)
T cd01473 155 LKLLA 159 (192)
T ss_pred HHHhc
Confidence 77775
No 34
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.44 E-value=8.1e-12 Score=112.28 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=108.6
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc-----cEEEE--CCCCCH-HHHHHHh
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG-----VRVLV--TPTSDL-GKILACM 76 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~-----a~VLv--tlT~D~-~kils~L 76 (404)
+++|+||.|.||... +||+.++.++..|+..... +..++||++|.+.. ..++. +.+... ..+...|
T Consensus 2 ~v~~llD~SgSM~~~----~kl~~ak~a~~~l~~~l~~--~~d~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 75 (174)
T cd01454 2 AVTLLLDLSGSMRSD----RRIDVAKKAAVLLAEALEA--CGVPHAILGFTTDAGGRERVRWIKIKDFDESLHERARKRL 75 (174)
T ss_pred EEEEEEECCCCCCCC----cHHHHHHHHHHHHHHHHHH--cCCcEEEEEecCCCCCccceEEEEecCcccccchhHHHHH
Confidence 589999999999854 8999999999999887654 68999999999872 12333 222221 3567788
Q ss_pred cCccccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCC---------hhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 77 HGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHE---------KKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 77 ~~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d---------~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
..+.++|.+.+..||+.|...|..+ +..++.||||+++..+.. ..+..+.++.+++.+|.|++||+|..
T Consensus 76 ~~~~~~g~T~~~~al~~a~~~l~~~--~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~ 153 (174)
T cd01454 76 AALSPGGNTRDGAAIRHAAERLLAR--PEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRD 153 (174)
T ss_pred HccCCCCCCcHHHHHHHHHHHHhcC--CCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCc
Confidence 8888999999999999999988764 334556777776654321 12333448999999999999999997
Q ss_pred CC-CcHHHHHHHH
Q 015559 148 DE-GNTEKLEALL 159 (404)
Q Consensus 148 ~~-~n~~~L~~~~ 159 (404)
.. .+.+-++.+.
T Consensus 154 ~~~~~~~~~~~~~ 166 (174)
T cd01454 154 ATTVDKEYLKNIF 166 (174)
T ss_pred cccchHHHHHHhh
Confidence 72 1345555554
No 35
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=99.44 E-value=2.2e-12 Score=142.75 Aligned_cols=162 Identities=15% Similarity=0.229 Sum_probs=121.2
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC-----CHHHHHHHhcCc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS-----DLGKILACMHGL 79 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~-----D~~kils~L~~l 79 (404)
.++||||.|.||..+| ||...+.|+..|+... .+|..+||||+|.+. +.++.+|+. +...+...|. +
T Consensus 306 ~VVLVLDvSGSM~g~d----RL~~lkqAA~~fL~~~--l~~~DrVGLVtFsss-A~vl~pLt~Its~~dr~aL~~~L~-~ 377 (863)
T TIGR00868 306 IVCLVLDKSGSMTVED----RLKRMNQAAKLFLLQT--VEKGSWVGMVTFDSA-AYIKNELIQITSSAERDALTANLP-T 377 (863)
T ss_pred eEEEEEECCccccccC----HHHHHHHHHHHHHHHh--CCCCCEEEEEEECCc-eeEeeccccCCcHHHHHHHHHhhc-c
Confidence 4889999999998765 9999999999998875 457899999999997 688877762 4555666664 4
Q ss_pred cccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 015559 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 159 (404)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~ 159 (404)
.++|+++|..||+.|...|+++..+...+.|||+.++..+. ...+++.+++.+|+|++|+||... ...|+.++
T Consensus 378 ~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~----~~~~l~~lk~~gVtI~TIg~G~da---d~~L~~IA 450 (863)
T TIGR00868 378 AASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNT----ISSCFEEVKQSGAIIHTIALGPSA---AKELEELS 450 (863)
T ss_pred ccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCC----HHHHHHHHHHcCCEEEEEEeCCCh---HHHHHHHH
Confidence 57899999999999999998864444567788887765332 345677889999999999999865 25689998
Q ss_pred HHhcCCCCcEEEEeCCC-Cchhhhhh
Q 015559 160 AAVNNNDSSHLVHVPPG-PNALSDVL 184 (404)
Q Consensus 160 ~~vn~~d~Shlv~vp~g-~~lLsD~l 184 (404)
+.+ +|.+|.+-... -.-|.|++
T Consensus 451 ~~T---GG~~f~asd~~dl~~L~dAF 473 (863)
T TIGR00868 451 DMT---GGLRFYASDQADNNGLIDAF 473 (863)
T ss_pred Hhc---CCEEEEeCCHHHHHHHHHHH
Confidence 766 34444332222 11256665
No 36
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.44 E-value=4.5e-12 Score=114.33 Aligned_cols=146 Identities=12% Similarity=0.128 Sum_probs=111.6
Q ss_pred cceEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCC---cCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc
Q 015559 3 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLN---PENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL 79 (404)
Q Consensus 3 lEa~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~N---PesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l 79 (404)
.=.++||||.|.||.. .+|...+.++..|+..+.... +..+||||+|.+. ++++.++|..... .+..+
T Consensus 3 ~~~v~~llD~SgSM~~-----~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~-a~~~~~l~~~~~~---~~~~l 73 (176)
T cd01464 3 RLPIYLLLDTSGSMAG-----EPIEALNQGLQMLQSELRQDPYALESVEISVITFDSA-ARVIVPLTPLESF---QPPRL 73 (176)
T ss_pred CCCEEEEEECCCCCCC-----hHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCC-ceEecCCccHHhc---CCCcc
Confidence 3358999999999954 468888999999998765322 5679999999997 6999999864322 24456
Q ss_pred cccCCCcHHHHHHHHHHHhhhcCC-------CCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcH
Q 015559 80 EIGGELNLAAGIQVAQLALKHRQN-------KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNT 152 (404)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~-------k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~ 152 (404)
..+|+|++..||+.|...|+.+.. ...++.||+|+++-.+.+.....+.++.+++.+|.|++||+|.. .|.
T Consensus 74 ~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~i~~igiG~~--~~~ 151 (176)
T cd01464 74 TASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAIERIKEARDSKGRIVACAVGPK--ADL 151 (176)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHHHHHHhhcccCCcEEEEEeccc--cCH
Confidence 788999999999999998865321 12345688888776555555556778888888999999999994 478
Q ss_pred HHHHHHH
Q 015559 153 EKLEALL 159 (404)
Q Consensus 153 ~~L~~~~ 159 (404)
+.|+.|.
T Consensus 152 ~~L~~ia 158 (176)
T cd01464 152 DTLKQIT 158 (176)
T ss_pred HHHHHHH
Confidence 8888887
No 37
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=99.43 E-value=9e-12 Score=117.10 Aligned_cols=156 Identities=16% Similarity=0.176 Sum_probs=118.0
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcCccc-
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHGLEI- 81 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT--~D~~kils~L~~l~~- 81 (404)
-++|+||.|.||. +++|+.++.++..|++.+.-.+...+||||+|+.. +.+..+|+ .+...+..+|..+..
T Consensus 4 DlvfllD~S~Sm~-----~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~-~~~~~~l~~~~~~~~l~~~i~~i~~~ 77 (224)
T cd01475 4 DLVFLIDSSRSVR-----PENFELVKQFLNQIIDSLDVGPDATRVGLVQYSST-VKQEFPLGRFKSKADLKRAVRRMEYL 77 (224)
T ss_pred cEEEEEeCCCCCC-----HHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCc-eeEEecccccCCHHHHHHHHHhCcCC
Confidence 4899999999995 67899999999999998765556789999999988 69999998 567788899988854
Q ss_pred cCCCcHHHHHHHHHHH-hhh----cCCCC-CCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 015559 82 GGELNLAAGIQVAQLA-LKH----RQNKK-QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKL 155 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lA-LKh----r~~k~-~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L 155 (404)
+|.+.+..||..|... +.. |+... .++-+|||+++... +++...++.||+.||.|++||+|.. +...|
T Consensus 78 ~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~---~~~~~~a~~lk~~gv~i~~VgvG~~---~~~~L 151 (224)
T cd01475 78 ETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQ---DDVSEVAAKARALGIEMFAVGVGRA---DEEEL 151 (224)
T ss_pred CCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCc---ccHHHHHHHHHHCCcEEEEEeCCcC---CHHHH
Confidence 6788999999998854 432 32211 24445677666533 3577889999999999999999973 34567
Q ss_pred HHHHHHhcCCCCcEEEEeCC
Q 015559 156 EALLAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 156 ~~~~~~vn~~d~Shlv~vp~ 175 (404)
+.++ ......|+..+..
T Consensus 152 ~~ia---s~~~~~~~f~~~~ 168 (224)
T cd01475 152 REIA---SEPLADHVFYVED 168 (224)
T ss_pred HHHh---CCCcHhcEEEeCC
Confidence 7775 2223467777754
No 38
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.41 E-value=1.8e-11 Score=107.19 Aligned_cols=135 Identities=12% Similarity=0.157 Sum_probs=104.1
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCC
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGE 84 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~~G~ 84 (404)
.++||||.|.||.. +|+..++.++..|+..... +..+|+||+|.++......+.+.+..+++..|..+.++|+
T Consensus 2 ~v~illD~SgSM~~-----~k~~~a~~~~~~l~~~~~~--~~~~v~li~F~~~~~~~~~~~~~~~~~~~~~l~~~~~~gg 74 (152)
T cd01462 2 PVILLVDQSGSMYG-----APEEVAKAVALALLRIALA--ENRDTYLILFDSEFQTKIVDKTDDLEEPVEFLSGVQLGGG 74 (152)
T ss_pred CEEEEEECCCCCCC-----CHHHHHHHHHHHHHHHHHH--cCCcEEEEEeCCCceEEecCCcccHHHHHHHHhcCCCCCC
Confidence 47999999999963 4888888888888876554 4679999999988333334567788889999988888999
Q ss_pred CcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
+++..+|..+...+.+. ...+..||+|+++.-...+..+.+.++..++.+|.|++||+|...
T Consensus 75 T~l~~al~~a~~~l~~~--~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~ 136 (152)
T cd01462 75 TDINKALRYALELIERR--DPRKADIVLITDGYEGGVSDELLREVELKRSRVARFVALALGDHG 136 (152)
T ss_pred cCHHHHHHHHHHHHHhc--CCCCceEEEECCCCCCCCCHHHHHHHHHHHhcCcEEEEEEecCCC
Confidence 99999999999888652 234557777777643344455555667777778999999999954
No 39
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.41 E-value=1.1e-11 Score=132.98 Aligned_cols=151 Identities=16% Similarity=0.211 Sum_probs=124.0
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCC
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGE 84 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~~G~ 84 (404)
.++||||.|.||. .+||..++.++..|+...+. +..+||||+|++..+++++++|.+...+...|..+.++|+
T Consensus 409 ~v~fvvD~SGSM~-----~~rl~~aK~av~~Ll~~~~~--~~D~v~Li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gGg 481 (589)
T TIGR02031 409 LLIFVVDASGSAA-----VARMSEAKGAVELLLGEAYV--HRDQVSLIAFRGTAAEVLLPPSRSVEQAKRRLDVLPGGGG 481 (589)
T ss_pred eEEEEEECCCCCC-----hHHHHHHHHHHHHHHHhhcc--CCCEEEEEEECCCCceEECCCCCCHHHHHHHHhcCCCCCC
Confidence 3789999999994 36999999999999986432 4679999999988778999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC--C-------------hhHHHHHHHHHHhCCceEEEEEeCCCCC
Q 015559 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH--E-------------KKVLEMIGRKLKKNSVALDIVNFGEDDE 149 (404)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~--d-------------~~~l~~~ak~LKknnI~VdiI~fG~e~~ 149 (404)
|.|..||..|...++....+..+.+||||+++-.+. + ..++..+++++++.+|.+.+|++|...
T Consensus 482 TpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vid~~~~~- 560 (589)
T TIGR02031 482 TPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALALARKIREAGMPALVIDTAMRF- 560 (589)
T ss_pred CcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHHHHHHHHHHhcCCeEEEEeCCCCC-
Confidence 999999999998886422234556788888776652 1 245678899999999999999999764
Q ss_pred CcHHHHHHHHHHhc
Q 015559 150 GNTEKLEALLAAVN 163 (404)
Q Consensus 150 ~n~~~L~~~~~~vn 163 (404)
.....++.|++..+
T Consensus 561 ~~~~~~~~lA~~~~ 574 (589)
T TIGR02031 561 VSTGFAQKLARKMG 574 (589)
T ss_pred ccchHHHHHHHhcC
Confidence 44557999998774
No 40
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=99.36 E-value=2.7e-11 Score=106.24 Aligned_cols=165 Identities=20% Similarity=0.278 Sum_probs=120.9
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCC--HHHHHHHh-cCc-cc
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSD--LGKILACM-HGL-EI 81 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D--~~kils~L-~~l-~~ 81 (404)
++|+||.|.||.. .+|..++.++..|+..+...++..+||||+|+.. +.++.+++.. ..+++..+ ..+ ..
T Consensus 2 ivflvD~S~sm~~-----~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~ 75 (178)
T PF00092_consen 2 IVFLVDTSGSMSG-----DNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDS-ARVLFSLTDYQSKNDLLNAINDSIPSS 75 (178)
T ss_dssp EEEEEE-STTSCH-----HHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSS-EEEEEETTSHSSHHHHHHHHHTTGGCC
T ss_pred EEEEEeCCCCCch-----HHHHHHHHHHHHHHHhhhccccccccceeeeecc-ccccccccccccccccccccccccccc
Confidence 7999999999987 6799999999999998878999999999999988 5888888864 67888888 555 56
Q ss_pred cCCCcHHHHHHHHHHHhhhc---CCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015559 82 GGELNLAAGIQVAQLALKHR---QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr---~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~ 158 (404)
+|.+++..||..|...|..+ ..+..++-||+|+++....++.......+..++.+|.+..||+ .. .+.+.|+.|
T Consensus 76 ~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~i~~~~ig~--~~-~~~~~l~~l 152 (178)
T PF00092_consen 76 GGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSPSEEAANLKKSNGIKVIAIGI--DN-ADNEELREL 152 (178)
T ss_dssp BSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGHHHHHHHHHHHCTEEEEEEEE--SC-CHHHHHHHH
T ss_pred chhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcchHHHHHHHHHhcCcEEEEEec--Cc-CCHHHHHHH
Confidence 78999999999999998754 2234566677777777655444444444444445888888888 22 455778887
Q ss_pred HHHhcCCCCcEEEEeCCCCchhhh
Q 015559 159 LAAVNNNDSSHLVHVPPGPNALSD 182 (404)
Q Consensus 159 ~~~vn~~d~Shlv~vp~g~~lLsD 182 (404)
+... ....|+..++.-. .|.+
T Consensus 153 a~~~--~~~~~~~~~~~~~-~l~~ 173 (178)
T PF00092_consen 153 ASCP--TSEGHVFYLADFS-DLSQ 173 (178)
T ss_dssp SHSS--TCHHHEEEESSHH-HHHH
T ss_pred hCCC--CCCCcEEEcCCHH-HHHH
Confidence 6322 2446887776532 3444
No 41
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.36 E-value=1.5e-11 Score=115.22 Aligned_cols=157 Identities=12% Similarity=0.105 Sum_probs=111.9
Q ss_pred eEEEEEeCChhhhCCC-C--C-CCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEEC------CCCCH---HH
Q 015559 5 ATLICIDNSEWMRNGD-Y--A-PSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVT------PTSDL---GK 71 (404)
Q Consensus 5 a~vIvIDnSesMrngD-~--~-PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvt------lT~D~---~k 71 (404)
-+||+||+|.||..-+ | + .+||++.+..++.|+. |.+..+..+|| +.|.. .++.+ ||.|. ..
T Consensus 2 ~l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~-f~~~r~~DriG---~~g~~-~~~~~lt~d~p~t~d~~~~~~ 76 (191)
T cd01455 2 RLKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDG-FEDKIQYDIIG---HSGDG-PCVPFVKTNHPPKNNKERLET 76 (191)
T ss_pred ceEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHH-HHHhCccceee---ecCcc-cccCccccccCcccchhHHHH
Confidence 3799999999996433 2 2 5999999999988863 34567788999 46664 33444 44444 45
Q ss_pred HHHHhcCcccc--C-CCcHHHHHHHHHHHhh-hcCCCCCCeEEEEEEcCCCCCChhHHHHH-HHHHHhCCceEEEEEeCC
Q 015559 72 ILACMHGLEIG--G-ELNLAAGIQVAQLALK-HRQNKKQQQRIIVFVGSPIKHEKKVLEMI-GRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 72 ils~L~~l~~~--G-~~sL~~gL~iA~lALK-hr~~k~~~~RIVlFvgSp~~~d~~~l~~~-ak~LKknnI~VdiI~fG~ 146 (404)
+..-|+.++++ | +|. .||.+|..-|+ +. +...+.||+|+++..+...-++.++ ++.+++.||+|++||+|.
T Consensus 77 l~~~l~~~q~g~ag~~Ta--dAi~~av~rl~~~~--~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~ 152 (191)
T cd01455 77 LKMMHAHSQFCWSGDHTV--EATEFAIKELAAKE--DFDEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGS 152 (191)
T ss_pred HHHHHHhcccCccCccHH--HHHHHHHHHHHhcC--cCCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecC
Confidence 55566666554 4 455 99999999997 64 4456678888888876666677875 688899999999999998
Q ss_pred CCCCcHHHHHHHHHHhcCCCCcEEEEeCCC
Q 015559 147 DDEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (404)
Q Consensus 147 e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g 176 (404)
..+ +.|+.+.+.+ +|.+|..-...
T Consensus 153 ~d~---~~l~~iA~~t---gG~~F~A~d~~ 176 (191)
T cd01455 153 LSD---EADQLQRELP---AGKAFVCMDTS 176 (191)
T ss_pred CCH---HHHHHHHhCC---CCcEEEeCCHH
Confidence 652 4577666444 56777766553
No 42
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.36 E-value=4.5e-11 Score=129.06 Aligned_cols=152 Identities=20% Similarity=0.238 Sum_probs=123.6
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCC
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGE 84 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~~G~ 84 (404)
.++|+||.|.||.. .+||..++.++..|+..-+ .+..+||||+|.|..+++++++|.+...+...|..+.++|.
T Consensus 467 ~vv~vvD~SgSM~~----~~rl~~ak~a~~~ll~~a~--~~~D~v~lI~F~g~~a~~~~p~t~~~~~~~~~L~~l~~gG~ 540 (633)
T TIGR02442 467 LVIFVVDASGSMAA----RGRMAAAKGAVLSLLRDAY--QKRDKVALITFRGEEAEVLLPPTSSVELAARRLEELPTGGR 540 (633)
T ss_pred eEEEEEECCccCCC----ccHHHHHHHHHHHHHHHhh--cCCCEEEEEEECCCCceEEcCCCCCHHHHHHHHHhCCCCCC
Confidence 58899999999973 3799999999988886533 24689999999987789999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhhh--cCCCCCCeEEEEEEcCCCCC------ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHH
Q 015559 85 LNLAAGIQVAQLALKH--RQNKKQQQRIIVFVGSPIKH------EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLE 156 (404)
Q Consensus 85 ~sL~~gL~iA~lALKh--r~~k~~~~RIVlFvgSp~~~------d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~ 156 (404)
|.|..||..|...|+. +..+..+..||||+++-.+. ..++...++++|++.+|.+.+|+.+... .....|+
T Consensus 541 Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt~~~~-~~~~~~~ 619 (633)
T TIGR02442 541 TPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESGF-VRLGLAE 619 (633)
T ss_pred CCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCCC-cchhHHH
Confidence 9999999999988873 12334556677777665543 1346778899999999999999987754 4567899
Q ss_pred HHHHHhc
Q 015559 157 ALLAAVN 163 (404)
Q Consensus 157 ~~~~~vn 163 (404)
.|++.++
T Consensus 620 ~lA~~~g 626 (633)
T TIGR02442 620 DLARALG 626 (633)
T ss_pred HHHHhhC
Confidence 9998884
No 43
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=99.29 E-value=1.3e-10 Score=123.68 Aligned_cols=162 Identities=14% Similarity=0.093 Sum_probs=116.9
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCH----HHHHHHhcC--
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDL----GKILACMHG-- 78 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~----~kils~L~~-- 78 (404)
-++|+||.|.||. .++++..++.++..|+..+.-+.=..+||||+|++. +.++++++... ..++..|..
T Consensus 44 DIvFLLD~SgSMg----~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~-~r~vfpL~s~~s~Dk~~aL~~I~sL~ 118 (576)
T PTZ00441 44 DLYLLVDGSGSIG----YHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNN-TTELIRLGSGASKDKEQALIIVKSLR 118 (576)
T ss_pred eEEEEEeCCCccC----CccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCC-ceEEEecCCCccccHHHHHHHHHHHH
Confidence 4799999999996 357788899999999998866655678888999987 68888887543 456666654
Q ss_pred --ccccCCCcHHHHHHHHHHHhhhcCCC-CCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 015559 79 --LEIGGELNLAAGIQVAQLALKHRQNK-KQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKL 155 (404)
Q Consensus 79 --l~~~G~~sL~~gL~iA~lALKhr~~k-~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L 155 (404)
+.++|.|++..||..|...|+++..+ +..+-||||+++.. .+..+....+++|++.||.|.+||+|... |...|
T Consensus 119 ~~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~s-ns~~dvleaAq~LR~~GVeI~vIGVG~g~--n~e~L 195 (576)
T PTZ00441 119 KTYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIP-NSKYRALEESRKLKDRNVKLAVIGIGQGI--NHQFN 195 (576)
T ss_pred hhccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCC-CCcccHHHHHHHHHHCCCEEEEEEeCCCc--CHHHH
Confidence 35789999999999999888765322 23355666666553 23356778899999999999999999855 45666
Q ss_pred HHHHHHhcCCCCcEEEEeC
Q 015559 156 EALLAAVNNNDSSHLVHVP 174 (404)
Q Consensus 156 ~~~~~~vn~~d~Shlv~vp 174 (404)
+.++-.=...++++|+.+-
T Consensus 196 rlIAgC~p~~g~c~~Y~va 214 (576)
T PTZ00441 196 RLLAGCRPREGKCKFYSDA 214 (576)
T ss_pred HHHhccCCCCCCCceEEeC
Confidence 6654210112345555553
No 44
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=99.28 E-value=8.4e-11 Score=103.28 Aligned_cols=143 Identities=20% Similarity=0.278 Sum_probs=112.5
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECC----C-CCHHHHHHHhcCc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTP----T-SDLGKILACMHGL 79 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtl----T-~D~~kils~L~~l 79 (404)
-+||+||.|.||.-.- ..++++++.+++. ..|..++.||+|+.. +..+.+- | .+....+..|..+
T Consensus 2 ~vvilvD~S~Sm~g~~------~~~k~al~~~l~~---L~~~d~fnii~f~~~-~~~~~~~~~~~~~~~~~~a~~~I~~~ 71 (155)
T PF13768_consen 2 DVVILVDTSGSMSGEK------ELVKDALRAILRS---LPPGDRFNIIAFGSS-VRPLFPGLVPATEENRQEALQWIKSL 71 (155)
T ss_pred eEEEEEeCCCCCCCcH------HHHHHHHHHHHHh---CCCCCEEEEEEeCCE-eeEcchhHHHHhHHHHHHHHHHHHHh
Confidence 4799999999995432 8899999999986 789999999999986 4544432 1 3455678888899
Q ss_pred cc-cCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015559 80 EI-GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (404)
Q Consensus 80 ~~-~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~ 158 (404)
.+ .|.+++..+|+.|...+. .+.....||+|+++.....+..+...+++.. .+|+|.+|+||... +...|+.|
T Consensus 72 ~~~~G~t~l~~aL~~a~~~~~---~~~~~~~IilltDG~~~~~~~~i~~~v~~~~-~~~~i~~~~~g~~~--~~~~L~~L 145 (155)
T PF13768_consen 72 EANSGGTDLLAALRAALALLQ---RPGCVRAIILLTDGQPVSGEEEILDLVRRAR-GHIRIFTFGIGSDA--DADFLREL 145 (155)
T ss_pred cccCCCccHHHHHHHHHHhcc---cCCCccEEEEEEeccCCCCHHHHHHHHHhcC-CCceEEEEEECChh--HHHHHHHH
Confidence 88 899999999998887762 3457778899987765455667777777644 67999999999965 57899999
Q ss_pred HHHhc
Q 015559 159 LAAVN 163 (404)
Q Consensus 159 ~~~vn 163 (404)
....+
T Consensus 146 A~~~~ 150 (155)
T PF13768_consen 146 ARATG 150 (155)
T ss_pred HHcCC
Confidence 97764
No 45
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.28 E-value=3.9e-10 Score=102.13 Aligned_cols=153 Identities=17% Similarity=0.216 Sum_probs=116.9
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcCccc-
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHGLEI- 81 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT--~D~~kils~L~~l~~- 81 (404)
-++|+||.|.|+. +..|+.++..+..|++.+.=.+...+||||++++. +.+...+. .+...++.+|+++..
T Consensus 2 DivfllD~S~Si~-----~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~-~~~~~~l~~~~~~~~l~~~i~~i~~~ 75 (165)
T cd01481 2 DIVFLIDGSDNVG-----SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDT-PRPEFYLNTHSTKADVLGAVRRLRLR 75 (165)
T ss_pred CEEEEEeCCCCcC-----HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCC-eeEEEeccccCCHHHHHHHHHhcccC
Confidence 3799999999985 78899999999999998765666789999999987 58887776 467889999999865
Q ss_pred cC-CCcHHHHHHHHHHHhhhcC-----CCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 015559 82 GG-ELNLAAGIQVAQLALKHRQ-----NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKL 155 (404)
Q Consensus 82 ~G-~~sL~~gL~iA~lALKhr~-----~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L 155 (404)
+| .++...||+.+...+-... .++.++.+|||+++... +++...++.||+.||.|..||.|. .|.+-|
T Consensus 76 ~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~---d~~~~~a~~lr~~gv~i~~vG~~~---~~~~eL 149 (165)
T cd01481 76 GGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQ---DDVERPAVALKRAGIVPFAIGARN---ADLAEL 149 (165)
T ss_pred CCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCc---chHHHHHHHHHHCCcEEEEEeCCc---CCHHHH
Confidence 44 4799999999876553321 12344566777776643 457889999999999999999983 355677
Q ss_pred HHHHHHhcCCCCcEEEEeC
Q 015559 156 EALLAAVNNNDSSHLVHVP 174 (404)
Q Consensus 156 ~~~~~~vn~~d~Shlv~vp 174 (404)
+.++ ++.+|+.++.
T Consensus 150 ~~ia-----s~p~~vf~v~ 163 (165)
T cd01481 150 QQIA-----FDPSFVFQVS 163 (165)
T ss_pred HHHh-----CCCccEEEec
Confidence 7775 3446776664
No 46
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.26 E-value=2.1e-10 Score=105.89 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=112.0
Q ss_pred ceEEEEEeCChhhhCCC--CCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccc
Q 015559 4 EATLICIDNSEWMRNGD--YAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEI 81 (404)
Q Consensus 4 Ea~vIvIDnSesMrngD--~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~ 81 (404)
.-++|+||.|.||...+ ..|+||..++.++..|+.... ......++++.|.+.. ..+.+++ ...+...+.++.+
T Consensus 3 ~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~-~~D~d~i~l~~f~~~~-~~~~~~~--~~~v~~~~~~~~p 78 (199)
T cd01457 3 RDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCE-EYDSDGITVYLFSGDF-RRYDNVN--SSKVDQLFAENSP 78 (199)
T ss_pred cCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHH-hcCCCCeEEEEecCCc-cccCCcC--HHHHHHHHhcCCC
Confidence 35899999999999887 678999999999999987644 3445679999998873 5556776 7788888888889
Q ss_pred cCCCcHHHHHHHHHHHhhhcC--CCC-C-CeEEEEEEcCCCCCChhH----HHHHHHHHHh-CCceEEEEEeCCCCCCcH
Q 015559 82 GGELNLAAGIQVAQLALKHRQ--NKK-Q-QQRIIVFVGSPIKHEKKV----LEMIGRKLKK-NSVALDIVNFGEDDEGNT 152 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~--~k~-~-~~RIVlFvgSp~~~d~~~----l~~~ak~LKk-nnI~VdiI~fG~e~~~n~ 152 (404)
.|.+++..+|+.+...+..+. +.. + ..-||||+++... +... |.+.+++|++ ++|.+.+|++|... ...
T Consensus 79 ~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~-d~~~~~~~i~~a~~~l~~~~~i~i~~v~vG~~~-~~~ 156 (199)
T cd01457 79 DGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPD-DKDAVERVIIKASDELDADNELAISFLQIGRDP-AAT 156 (199)
T ss_pred CCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCC-cHHHHHHHHHHHHHhhccccCceEEEEEeCCcH-HHH
Confidence 999999999999975544321 111 1 3445666666543 3333 3455555544 47999999999976 566
Q ss_pred HHHHHHHHHh
Q 015559 153 EKLEALLAAV 162 (404)
Q Consensus 153 ~~L~~~~~~v 162 (404)
..|+.|-+..
T Consensus 157 ~~L~~ld~~~ 166 (199)
T cd01457 157 AFLKALDDQL 166 (199)
T ss_pred HHHHHHhHHH
Confidence 7788887654
No 47
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=99.25 E-value=4.4e-10 Score=109.31 Aligned_cols=150 Identities=19% Similarity=0.229 Sum_probs=128.0
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCCC
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEL 85 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~~G~~ 85 (404)
+||+||-|.||+. ..|+.+++-++..|+..=.+. -++|+||+|.|..++|+++||.+...+-..|..+.++|.|
T Consensus 81 vvfvVDASgSM~~----~~Rm~aaKG~~~~lL~dAYq~--RdkvavI~F~G~~A~lll~pT~sv~~~~~~L~~l~~GG~T 154 (261)
T COG1240 81 IVFVVDASGSMAA----RRRMAAAKGAALSLLRDAYQR--RDKVAVIAFRGEKAELLLPPTSSVELAERALERLPTGGKT 154 (261)
T ss_pred EEEEEeCcccchh----HHHHHHHHHHHHHHHHHHHHc--cceEEEEEecCCcceEEeCCcccHHHHHHHHHhCCCCCCC
Confidence 7999999999984 569999999999999875555 6899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhhhc--CCCCCCeEEEEEEcCCCCC----C-hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015559 86 NLAAGIQVAQLALKHR--QNKKQQQRIIVFVGSPIKH----E-KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (404)
Q Consensus 86 sL~~gL~iA~lALKhr--~~k~~~~RIVlFvgSp~~~----d-~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~ 158 (404)
-|..||++|...|... .++..+..+||++++-.+. + ..+...++.++...++.+-||++-... .-..+.+.|
T Consensus 155 PL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~-~~~g~~~~i 233 (261)
T COG1240 155 PLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSE-VRLGLAEEI 233 (261)
T ss_pred chHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCcc-ccccHHHHH
Confidence 9999999999888643 3455777788888776542 3 357788999999999999999998766 455677888
Q ss_pred HHHh
Q 015559 159 LAAV 162 (404)
Q Consensus 159 ~~~v 162 (404)
+...
T Consensus 234 A~~~ 237 (261)
T COG1240 234 ARAS 237 (261)
T ss_pred HHHh
Confidence 8766
No 48
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=99.12 E-value=1.9e-09 Score=115.44 Aligned_cols=144 Identities=16% Similarity=0.207 Sum_probs=109.2
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC-----CHHHHHHHhcCc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS-----DLGKILACMHGL 79 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~-----D~~kils~L~~l 79 (404)
.++||||.|.||.. .++..++.++..++.. .+|..+++||.|.+. +.++.+.+. +..+++..|..+
T Consensus 273 ~vvfvlD~SgSM~g-----~~i~~ak~al~~~l~~---L~~~d~~~ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~l 343 (596)
T TIGR03788 273 ELVFVIDTSGSMAG-----ESIEQAKSALLLALDQ---LRPGDRFNIIQFDSD-VTLLFPVPVPATAHNLARARQFVAGL 343 (596)
T ss_pred eEEEEEECCCCCCC-----ccHHHHHHHHHHHHHh---CCCCCEEEEEEECCc-ceEeccccccCCHHHHHHHHHHHhhC
Confidence 58999999999984 3578888899888874 688999999999887 577755432 345677788899
Q ss_pred cccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 015559 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 159 (404)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~ 159 (404)
.++|+++|..||+.|...+... .+....+||+|+++.. .++..+.+.++. +..+++|++||||... |...|+.+.
T Consensus 344 ~a~GgT~l~~aL~~a~~~~~~~-~~~~~~~iillTDG~~-~~~~~~~~~~~~-~~~~~ri~tvGiG~~~--n~~lL~~lA 418 (596)
T TIGR03788 344 QADGGTEMAGALSAALRDDGPE-SSGALRQVVFLTDGAV-GNEDALFQLIRT-KLGDSRLFTVGIGSAP--NSYFMRKAA 418 (596)
T ss_pred CCCCCccHHHHHHHHHHhhccc-CCCceeEEEEEeCCCC-CCHHHHHHHHHH-hcCCceEEEEEeCCCc--CHHHHHHHH
Confidence 9999999999999988664332 2334556888888764 345666666644 3457999999999865 568899988
Q ss_pred HHh
Q 015559 160 AAV 162 (404)
Q Consensus 160 ~~v 162 (404)
+..
T Consensus 419 ~~g 421 (596)
T TIGR03788 419 QFG 421 (596)
T ss_pred HcC
Confidence 654
No 49
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=1.3e-07 Score=93.66 Aligned_cols=175 Identities=17% Similarity=0.178 Sum_probs=121.8
Q ss_pred eEEEEEeCChhhh---CCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC---------CH---
Q 015559 5 ATLICIDNSEWMR---NGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS---------DL--- 69 (404)
Q Consensus 5 a~vIvIDnSesMr---ngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~---------D~--- 69 (404)
-++|+||.+..-+ ..+=.+.-|....+++-.|++.++-.|+.|+|.||+....+...|-|-+. +.
T Consensus 4 lL~vvlD~np~~W~~~~~~~~~~~l~~~l~sllvF~NahL~l~~~N~vaVIAs~~~~~~~LYps~~~~~~~~~~~~~~~~ 83 (279)
T TIGR00627 4 LLVVIIEANPCSWGMLALAHGKRTISKVLRAIVVFLNAHLAFNANNKLAVIASHSQDNKYLYPSTRCEDRNASELDPKRL 83 (279)
T ss_pred EEEEEEeCCHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCccCCEEEEEecCCcceEEecCCccccccccccccccc
Confidence 4789999998765 22212557888899999999999999999999999998777676644321 10
Q ss_pred ------------HHHHHHhcCc----cc----cCCCcHHHHHHHHHHHhhhcC-----CCCCCeEEEEEEcCCCCC-Chh
Q 015559 70 ------------GKILACMHGL----EI----GGELNLAAGIQVAQLALKHRQ-----NKKQQQRIIVFVGSPIKH-EKK 123 (404)
Q Consensus 70 ------------~kils~L~~l----~~----~G~~sL~~gL~iA~lALKhr~-----~k~~~~RIVlFvgSp~~~-d~~ 123 (404)
..++..|..+ .. .+.+.|..||.+|+-.+..+. ....+.||+||.+|+... .=.
T Consensus 84 ~~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~~~~~qYi 163 (279)
T TIGR00627 84 RELLYRDFRTVDETIVEEIKPLMAHADKHMKKDSRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITPDMALQYI 163 (279)
T ss_pred cchhccchhHHHHHHHHHHHHHHhhchhcccccccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCCCchHHHH
Confidence 0134444322 11 146678888888886654321 234588999999988543 234
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCCchhhhhhhc
Q 015559 124 VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLS 186 (404)
Q Consensus 124 ~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~~lLsD~l~s 186 (404)
.+..++..++|.||+||+|+++.+. ...+|+.+++.|+| -|.+++...+ |.+.|+.
T Consensus 164 ~~mn~Ifaaqk~~I~Idv~~L~~e~--~~~~lqQa~~~TgG----~Y~~~~~~~~-L~q~L~~ 219 (279)
T TIGR00627 164 PLMNCIFSAQKQNIPIDVVSIGGDF--TSGFLQQAADITGG----SYLHVKKPQG-LLQYLMT 219 (279)
T ss_pred HHHHHHHHHHHcCceEEEEEeCCcc--ccHHHHHHHHHhCC----EEeccCCHhH-HHHHHHH
Confidence 5668999999999999999999761 13599999999965 3444444444 6666654
No 50
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=98.72 E-value=3.1e-07 Score=85.91 Aligned_cols=140 Identities=23% Similarity=0.287 Sum_probs=96.2
Q ss_pred eEEEEEeCChhhhCCCCCC-CHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCC------------ccEEEECCCCCHHH
Q 015559 5 ATLICIDNSEWMRNGDYAP-SRFQAQTEAANLICGAKTQLNPENTVGVMTMAGK------------GVRVLVTPTSDLGK 71 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~P-tRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~------------~a~VLvtlT~D~~k 71 (404)
||++|||+|.+|-...-.. .+|..+..++..++..|.-.+|...||||.++-. ...++.+++.---+
T Consensus 1 ~~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~l~~~~~~ 80 (224)
T PF03731_consen 1 ATVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQPLDPPSAE 80 (224)
T ss_dssp EEEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEECC--BHH
T ss_pred CEEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeecCCccCHH
Confidence 6999999999998443221 2899999999999999999999999999999732 24566777655555
Q ss_pred HHHHhcCc-cc----------cCCCcHHHHHHHHHHHhhh--cCCCCCCeEEEEEEcCCCCC-ChhHHHHHHH-----HH
Q 015559 72 ILACMHGL-EI----------GGELNLAAGIQVAQLALKH--RQNKKQQQRIIVFVGSPIKH-EKKVLEMIGR-----KL 132 (404)
Q Consensus 72 ils~L~~l-~~----------~G~~sL~~gL~iA~lALKh--r~~k~~~~RIVlFvgSp~~~-d~~~l~~~ak-----~L 132 (404)
.+..|..+ .. ....++..+|.+|...|++ ...+...+|||+|+...... +...+..+++ .+
T Consensus 81 ~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~~~~~~~~~~~~~l~~~Dl 160 (224)
T PF03731_consen 81 RLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPHEDDDELERIIQKLKAKDL 160 (224)
T ss_dssp HHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCHHHHHHHHHhhccccc
Confidence 56666554 33 3568999999999999986 33455678899998555443 5555555544 49
Q ss_pred HhCCceEEEEEe
Q 015559 133 KKNSVALDIVNF 144 (404)
Q Consensus 133 KknnI~VdiI~f 144 (404)
+.++|.+.++.+
T Consensus 161 ~~~~i~~~~~~l 172 (224)
T PF03731_consen 161 QDNGIEIELFFL 172 (224)
T ss_dssp HHHTEEEEEEEC
T ss_pred hhcCcceeEeec
Confidence 999999999999
No 51
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=98.59 E-value=2.1e-06 Score=92.58 Aligned_cols=144 Identities=15% Similarity=0.205 Sum_probs=107.2
Q ss_pred cceEEEEEeCChhhhCCCC---CCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCC---------ccEEEECCCCCHH
Q 015559 3 LEATLICIDNSEWMRNGDY---APSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGK---------GVRVLVTPTSDLG 70 (404)
Q Consensus 3 lEa~vIvIDnSesMrngD~---~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~---------~a~VLvtlT~D~~ 70 (404)
-|++++|||+|.+|-...- ..++|..+..++..+++.+.=.+|...||||.|+-+ .+.|+.+|..--.
T Consensus 10 keailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~L~~p~a 89 (584)
T TIGR00578 10 RDSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGA 89 (584)
T ss_pred eeEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEeeCCCCCH
Confidence 4899999999999996321 258999999999999999999999999999999743 3456666665545
Q ss_pred HHHHHhcCcccc------------CC-CcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC--C--h-hHHHHHHHHH
Q 015559 71 KILACMHGLEIG------------GE-LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH--E--K-KVLEMIGRKL 132 (404)
Q Consensus 71 kils~L~~l~~~------------G~-~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~--d--~-~~l~~~ak~L 132 (404)
+.+..|..+..+ ++ .+|.++|-+|...|.....+...+||++|+.-+... + . ......|+.|
T Consensus 90 ~~i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D~P~~~~~~~~~~a~~~a~dl 169 (584)
T TIGR00578 90 KRILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDL 169 (584)
T ss_pred HHHHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCCCCCCCchhHHHHHHHHHHHH
Confidence 555555544221 22 488999999999987654455678999998554432 1 1 1225579999
Q ss_pred HhCCceEEEEEeCC
Q 015559 133 KKNSVALDIVNFGE 146 (404)
Q Consensus 133 KknnI~VdiI~fG~ 146 (404)
++.+|.|.++.+..
T Consensus 170 ~~~gi~ielf~l~~ 183 (584)
T TIGR00578 170 RDTGIFLDLMHLKK 183 (584)
T ss_pred HhcCeEEEEEecCC
Confidence 99999999997654
No 52
>PRK10997 yieM hypothetical protein; Provisional
Probab=98.43 E-value=5.9e-06 Score=87.41 Aligned_cols=140 Identities=14% Similarity=0.158 Sum_probs=94.5
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCC
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGE 84 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~~G~ 84 (404)
-++||||.|.||. | + |. .+++.++-.++.. -.....++|||.|.+.....-.+.......++.+|... .+|+
T Consensus 325 piII~VDtSGSM~-G-~-ke--~~AkalAaAL~~i--Al~q~dr~~li~Fs~~i~~~~l~~~~gl~~ll~fL~~~-f~GG 396 (487)
T PRK10997 325 PFIVCVDTSGSMG-G-F-NE--QCAKAFCLALMRI--ALAENRRCYIMLFSTEVVTYELTGPDGLEQAIRFLSQS-FRGG 396 (487)
T ss_pred cEEEEEECCCCCC-C-C-HH--HHHHHHHHHHHHH--HHhcCCCEEEEEecCCceeeccCCccCHHHHHHHHHHh-cCCC
Confidence 3799999999996 2 2 33 3344322222221 24456789999999875332234445677888888755 5899
Q ss_pred CcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC--ChhHHHHHHHHHHh-CCceEEEEEeCCCCCCcHHHHHHH
Q 015559 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH--EKKVLEMIGRKLKK-NSVALDIVNFGEDDEGNTEKLEAL 158 (404)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~--d~~~l~~~ak~LKk-nnI~VdiI~fG~e~~~n~~~L~~~ 158 (404)
|+|..+|..+...++.+ ..+ +-+|||-|+.-. -+..+.+..+.||+ .+.+++.|.+|... |..+++.|
T Consensus 397 TDl~~aL~~al~~l~~~---~~r-~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~~--~p~l~~if 467 (487)
T PRK10997 397 TDLAPCLRAIIEKMQGR---EWF-DADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAHG--KPGIMRIF 467 (487)
T ss_pred CcHHHHHHHHHHHHccc---ccC-CceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCCC--CchHHHhc
Confidence 99999999999888652 223 334444556543 36789999999988 89999999999644 44554443
No 53
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=98.39 E-value=7.5e-06 Score=79.00 Aligned_cols=149 Identities=19% Similarity=0.177 Sum_probs=102.2
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEE-----------------------
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRV----------------------- 61 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~V----------------------- 61 (404)
+.++|||+|..-.+.- =++..++++...+...-..+|..+||||||... ..+
T Consensus 5 ~~~FvIDvs~~a~~~g----~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~-v~~y~l~~~~~~~q~~vv~dl~d~f~ 79 (244)
T cd01479 5 VYVFLIDVSYNAIKSG----LLATACEALLSNLDNLPGDDPRTRVGFITFDST-LHFFNLKSSLEQPQMMVVSDLDDPFL 79 (244)
T ss_pred EEEEEEEccHHHHhhC----hHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCe-EEEEECCCCCCCCeEEEeeCcccccC
Confidence 5789999997653311 256777788877775433337799999999863 222
Q ss_pred ------EECCCCCHHHHHHHhcCcc------ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCCh-------
Q 015559 62 ------LVTPTSDLGKILACMHGLE------IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEK------- 122 (404)
Q Consensus 62 ------LvtlT~D~~kils~L~~l~------~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~------- 122 (404)
++++......|...|+.|. ......++.||++|..+|++ ..-||++|++|+-+..+
T Consensus 80 P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~-----~GGkIi~f~s~~pt~GpG~l~~~~ 154 (244)
T cd01479 80 PLPDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKE-----TGGKIIVFQSSLPTLGAGKLKSRE 154 (244)
T ss_pred CCCcceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHh-----cCCEEEEEeCCCCCcCCcccccCc
Confidence 1111222334555555551 12468899999999999996 34599999988643211
Q ss_pred ------------------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcC
Q 015559 123 ------------------KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN 164 (404)
Q Consensus 123 ------------------~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~ 164 (404)
+--.+++.++.+++|.||+..++... -...-+..++..++|
T Consensus 155 ~~~~~~~~~e~~~~~p~~~fY~~la~~~~~~~isvDlF~~~~~~-~dla~l~~l~~~TGG 213 (244)
T cd01479 155 DPKLLSTDKEKQLLQPQTDFYKKLALECVKSQISVDLFLFSNQY-VDVATLGCLSRLTGG 213 (244)
T ss_pred cccccCchhhhhhcCcchHHHHHHHHHHHHcCeEEEEEEccCcc-cChhhhhhhhhhcCc
Confidence 12246899999999999999998766 567778899877743
No 54
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=98.35 E-value=2e-05 Score=74.77 Aligned_cols=170 Identities=16% Similarity=0.213 Sum_probs=118.4
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC-CCHHHHHHHhcC----c
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT-SDLGKILACMHG----L 79 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT-~D~~kils~L~~----l 79 (404)
.|++|||.|.||+ +=|+--+.+...+=+--+... ..+..+|=+.+|+.+ +..+-++| .|+...+..+|. +
T Consensus 3 rV~LVLD~SGSM~-~~yk~G~vQ~~~Er~lalA~~---~DdDG~i~v~~Fs~~-~~~~~~vt~~~~~~~v~~~~~~~~~~ 77 (200)
T PF10138_consen 3 RVYLVLDISGSMR-PLYKDGTVQRVVERILALAAQ---FDDDGEIDVWFFSTE-FDRLPDVTLDNYEGYVDELHAGLPDW 77 (200)
T ss_pred EEEEEEeCCCCCc-hhhhCccHHHHHHHHHHHHhh---cCCCCceEEEEeCCC-CCcCCCcCHHHHHHHHHHHhcccccc
Confidence 4799999999998 445555666554443333332 446678999999987 56676666 344445555543 2
Q ss_pred cccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEE-cCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015559 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (404)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFv-gSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~ 158 (404)
..-|.++..-+|+-+......+.....+ ..|||+ ++. ..+...+.++++...+..|....||||...+ .+|++|
T Consensus 78 ~~~G~t~y~~vm~~v~~~y~~~~~~~~P-~~VlFiTDG~-~~~~~~~~~~i~~as~~pifwqFVgiG~~~f---~fL~kL 152 (200)
T PF10138_consen 78 GRMGGTNYAPVMEDVLDHYFKREPSDAP-ALVLFITDGG-PDDRRAIEKLIREASDEPIFWQFVGIGDSNF---GFLEKL 152 (200)
T ss_pred CCCCCcchHHHHHHHHHHHhhcCCCCCC-eEEEEEecCC-ccchHHHHHHHHhccCCCeeEEEEEecCCcc---hHHHHh
Confidence 4447799999999988776644322234 455555 443 4578889999999999999999999999875 799998
Q ss_pred HHHhcCC--CCcEEEEeCCCC----chhhhhhh
Q 015559 159 LAAVNNN--DSSHLVHVPPGP----NALSDVLL 185 (404)
Q Consensus 159 ~~~vn~~--d~Shlv~vp~g~----~lLsD~l~ 185 (404)
-+ +.+- ||+.|+++..-+ .-|+|.|+
T Consensus 153 D~-l~gR~vDNa~Ff~~~d~~~lsD~eLy~~LL 184 (200)
T PF10138_consen 153 DD-LAGRVVDNAGFFAIDDIDELSDEELYDRLL 184 (200)
T ss_pred hc-cCCcccCCcCeEecCCcccCCHHHHHHHHH
Confidence 65 4332 789999987643 22666664
No 55
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=98.32 E-value=2.7e-05 Score=74.48 Aligned_cols=149 Identities=22% Similarity=0.189 Sum_probs=105.2
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEE---------------------
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLV--------------------- 63 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLv--------------------- 63 (404)
+.++|||.|....+ ..-++..+.++...+... ..++..+||||||.+. ..+.-
T Consensus 5 ~~vFvID~s~~ai~----~~~l~~~~~sl~~~l~~l-p~~~~~~igiITf~~~-V~~~~~~~~~~~~~~~v~~dl~d~f~ 78 (239)
T cd01468 5 VFVFVIDVSYEAIK----EGLLQALKESLLASLDLL-PGDPRARVGLITYDST-VHFYNLSSDLAQPKMYVVSDLKDVFL 78 (239)
T ss_pred EEEEEEEcchHhcc----ccHHHHHHHHHHHHHHhC-CCCCCcEEEEEEeCCe-EEEEECCCCCCCCeEEEeCCCccCcC
Confidence 67999999987644 344678888888888753 1248899999999643 33321
Q ss_pred CCC--------CCHHHHHHHhcCccc--------cCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCCh-----
Q 015559 64 TPT--------SDLGKILACMHGLEI--------GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEK----- 122 (404)
Q Consensus 64 tlT--------~D~~kils~L~~l~~--------~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~----- 122 (404)
++. .....|...|+.+.. .....++.||++|...|+++- ..-||++|++++-+..+
T Consensus 79 p~~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~---~gGkI~~f~sg~pt~GpG~l~~ 155 (239)
T cd01468 79 PLPDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTF---AGGRIIVFQGGLPTVGPGKLKS 155 (239)
T ss_pred CCcCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcC---CCceEEEEECCCCCCCCCcccc
Confidence 111 111345555555522 235889999999999999851 46799999988775222
Q ss_pred --------------------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 123 --------------------KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 123 --------------------~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
+--.+++.++.+++|.||+..++... -...-+..++..++
T Consensus 156 ~~~~~~~~~~~e~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~-~dl~~l~~l~~~TG 215 (239)
T cd01468 156 REDKEPIRSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDY-VDVATLKQLAKSTG 215 (239)
T ss_pred CcccccCCCccchhcccccHHHHHHHHHHHHHcCeEEEEEeccccc-cCHHHhhhhhhcCC
Confidence 22357899999999999999999876 56677888887774
No 56
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=98.24 E-value=2.6e-05 Score=74.43 Aligned_cols=149 Identities=18% Similarity=0.204 Sum_probs=99.7
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEE----------------------
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVL---------------------- 62 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VL---------------------- 62 (404)
+.++|||+|....+ ...++..++++...++..- .++..+||||||... ..+.
T Consensus 5 ~y~FvID~s~~av~----~g~~~~~~~sl~~~l~~l~-~~~~~~vgiitfd~~-V~~y~l~~~~~~~~~~v~~dl~~~~~ 78 (243)
T PF04811_consen 5 VYVFVIDVSYEAVQ----SGLLQSLIESLKSALDSLP-GDERTRVGIITFDSS-VHFYNLSSSLSQPQMIVVSDLDDPFI 78 (243)
T ss_dssp EEEEEEE-SHHHHH----HTHHHHHHHHHHHHGCTSS-TSTT-EEEEEEESSS-EEEEETTTTSSSTEEEEEHHTTSHHS
T ss_pred EEEEEEECchhhhh----ccHHHHHHHHHHHHHHhcc-CCCCcEEEEEEeCCE-EEEEECCCCcCCCcccchHHHhhccc
Confidence 57899999965322 3578888889888886533 569999999999754 3433
Q ss_pred -------ECCCCCHHHHHHHhcCcc--------ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCCh-----
Q 015559 63 -------VTPTSDLGKILACMHGLE--------IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEK----- 122 (404)
Q Consensus 63 -------vtlT~D~~kils~L~~l~--------~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~----- 122 (404)
+++......|...|+.+. ......++.||++|...|+.+. ..-||++|.+|+-+..+
T Consensus 79 p~~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~---~gGkI~~F~s~~pt~G~Gg~l~ 155 (243)
T PF04811_consen 79 PLPDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRN---TGGKILVFTSGPPTYGPGGSLK 155 (243)
T ss_dssp STSSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHT---S-EEEEEEESS---SSSTTSS-
T ss_pred CCcccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccc---cCCEEEEEeccCCCCCCCceec
Confidence 222333445555555541 2246889999999999999532 56799999988754322
Q ss_pred ----------------------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 123 ----------------------KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 123 ----------------------~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
+-..++++++.+.+|.||+..++... -...-|..++..+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~-~~l~tl~~l~~~TG 217 (243)
T PF04811_consen 156 KREDSSHYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSDY-VDLATLGPLARYTG 217 (243)
T ss_dssp SBTTSCCCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS---SHHHHTHHHHCTT
T ss_pred ccccccccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCCC-CCcHhHHHHHHhCc
Confidence 13578999999999999999999877 67888899987773
No 57
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=98.23 E-value=2.3e-05 Score=76.91 Aligned_cols=146 Identities=18% Similarity=0.183 Sum_probs=101.7
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEE---------------------
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLV--------------------- 63 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLv--------------------- 63 (404)
..++|||.|..-. .+++.++++...+.. ..+..+||||||... +.+.-
T Consensus 5 ~~vFviDvs~~~~-------el~~l~~sl~~~L~~---lP~~a~VGlITfd~~-V~~~~L~~~~~~~~~vf~g~~~~~~~ 73 (267)
T cd01478 5 VFLFVVDTCMDEE-------ELDALKESLIMSLSL---LPPNALVGLITFGTM-VQVHELGFEECSKSYVFRGNKDYTAK 73 (267)
T ss_pred EEEEEEECccCHH-------HHHHHHHHHHHHHHh---CCCCCEEEEEEECCE-EEEEEcCCCcCceeeeccCCccCCHH
Confidence 5789999997422 377888887777764 667789999999764 33321
Q ss_pred -------------------------------------CCCCCHHHHHHHhcCccc---------cCCCcHHHHHHHHHHH
Q 015559 64 -------------------------------------TPTSDLGKILACMHGLEI---------GGELNLAAGIQVAQLA 97 (404)
Q Consensus 64 -------------------------------------tlT~D~~kils~L~~l~~---------~G~~sL~~gL~iA~lA 97 (404)
++.-....|...|+.+.. .....++.||++|..+
T Consensus 74 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~l 153 (267)
T cd01478 74 QIQDMLGLGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGL 153 (267)
T ss_pred HHHHHhccccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHH
Confidence 111111234445555532 1368899999999999
Q ss_pred hhhcCCCCCCeEEEEEEcCCCCCChhH------------------------------HHHHHHHHHhCCceEEEEEeCCC
Q 015559 98 LKHRQNKKQQQRIIVFVGSPIKHEKKV------------------------------LEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 98 LKhr~~k~~~~RIVlFvgSp~~~d~~~------------------------------l~~~ak~LKknnI~VdiI~fG~e 147 (404)
|+.. -++..-||++|++++-+..++. -.++++++.+++|.||+..++..
T Consensus 154 l~~~-~~~~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~~~~vsvDlF~~s~d 232 (267)
T cd01478 154 LEAC-FPNTGARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAANGHAVDIFAGCLD 232 (267)
T ss_pred HHhh-cCCCCcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEEecccc
Confidence 9864 3456789999999876422211 13478888999999999999987
Q ss_pred CCCcHHHHHHHHHHhc
Q 015559 148 DEGNTEKLEALLAAVN 163 (404)
Q Consensus 148 ~~~n~~~L~~~~~~vn 163 (404)
. --..-+..+++.+.
T Consensus 233 ~-vglaem~~l~~~TG 247 (267)
T cd01478 233 Q-VGLLEMKVLVNSTG 247 (267)
T ss_pred c-cCHHHHHHHHHhcC
Confidence 6 56677888887663
No 58
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=98.11 E-value=7.2e-05 Score=70.54 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=95.0
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcC----CeEEEEEecCCccEEEECCCCCHHHHHHH-hcCc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPE----NTVGVMTMAGKGVRVLVTPTSDLGKILAC-MHGL 79 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPe----sqVGLVtmag~~a~VLvtlT~D~~kils~-L~~l 79 (404)
-|+++||+|.||+- .|+++....+..+++.+. ++|. .-++||||+|. +.+.+++|. +.++ ...+
T Consensus 5 P~~lllDtSgSM~G-----e~IealN~Glq~m~~~Lk-qdp~Ale~v~lsIVTF~~~-a~~~~pf~~----~~nF~~p~L 73 (207)
T COG4245 5 PCYLLLDTSGSMIG-----EPIEALNAGLQMMIDTLK-QDPYALERVELSIVTFGGP-ARVIQPFTD----AANFNPPIL 73 (207)
T ss_pred CEEEEEecCccccc-----ccHHHHHHHHHHHHHHHH-hChhhhheeEEEEEEecCc-ceEEechhh----HhhcCCCce
Confidence 48999999999974 689999999999999865 6664 56899999995 799998874 2221 1224
Q ss_pred cccCCCcHHHHHHHHHHHhhhc-----CCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcH
Q 015559 80 EIGGELNLAAGIQVAQLALKHR-----QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNT 152 (404)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr-----~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~ 152 (404)
...|++.++.||+.|......| .+...-=|=++|+-++.+-..+--..++....+. +.+|-.++||... .+.
T Consensus 74 ~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~w~~~~~~~~~~~~~~k~v~a~~~G~~~-ad~ 152 (207)
T COG4245 74 TAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDDWQAGAALVFQGERRAKSVAAFSVGVQG-ADN 152 (207)
T ss_pred ecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchHHHhHHHHhhhcccccceEEEEEecccc-ccc
Confidence 5679999999999999887654 1211112323333222221122222223333332 3456666777765 456
Q ss_pred HHHHHHHHHh
Q 015559 153 EKLEALLAAV 162 (404)
Q Consensus 153 ~~L~~~~~~v 162 (404)
+.|+++.++|
T Consensus 153 ~~L~qit~~V 162 (207)
T COG4245 153 KTLNQITEKV 162 (207)
T ss_pred HHHHHHHHhh
Confidence 7899888777
No 59
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=98.09 E-value=0.00026 Score=70.22 Aligned_cols=173 Identities=18% Similarity=0.183 Sum_probs=119.9
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC--------C--------
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS--------D-------- 68 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~--------D-------- 68 (404)
-++|+||.+..-+..=-.+..|....+++-.|++.+.-.|..|+|.||+....+.+.|-|... +
T Consensus 3 LLvIILD~nP~~W~~~~~~~~l~~~l~~llvFlNahL~l~~~N~vaVIAs~~~~s~~LYP~~~~~~~~~~~~~~~~~~~~ 82 (276)
T PF03850_consen 3 LLVIILDTNPLAWGQLSDQLSLSQFLDSLLVFLNAHLALNHSNQVAVIASHSNSSKFLYPSPSSSESSNSGDVEMNSSDS 82 (276)
T ss_pred EEEEEEECCHHHHhhccccccHHHHHHHHHHHHHHHHhhCccCCEEEEEEcCCccEEEeCCCccccccCCCccccccccc
Confidence 478999999776644333478888999999999999999999999999998888787755444 0
Q ss_pred ---------HHHHHHHhcCc----ccc----CCCcHHHHHHHHHHHhhhcC------CCCCCeEEEE-EEcCCCCCC-hh
Q 015559 69 ---------LGKILACMHGL----EIG----GELNLAAGIQVAQLALKHRQ------NKKQQQRIIV-FVGSPIKHE-KK 123 (404)
Q Consensus 69 ---------~~kils~L~~l----~~~----G~~sL~~gL~iA~lALKhr~------~k~~~~RIVl-FvgSp~~~d-~~ 123 (404)
-..++..|+.+ ... ..+.|..||.+|+-.+..+. +...+.||+| +.+|+.... =-
T Consensus 83 ~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~d~~~QYi 162 (276)
T PF03850_consen 83 NKYRQFRNVDETVLEELKKLMSETSESSDSTTSSLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSPDSSSQYI 162 (276)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCCCccHHHH
Confidence 01233344332 111 12788889988886654331 1356779999 667765432 22
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCCchhhhhhh
Q 015559 124 VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLL 185 (404)
Q Consensus 124 ~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~~lLsD~l~ 185 (404)
.+-..+-.+.|.+|.||++.+|.. ...+|+..++.|+| -|+.++.... |.-.|+
T Consensus 163 ~~MN~iFaAqk~~v~IDv~~L~~~---~s~fLqQa~d~T~G----~y~~~~~~~~-l~q~L~ 216 (276)
T PF03850_consen 163 PLMNCIFAAQKQKVPIDVCKLGGK---DSTFLQQASDITGG----IYLKVSKPEG-LLQYLL 216 (276)
T ss_pred HHHHHHHHHhcCCceeEEEEecCC---chHHHHHHHHHhCc----eeeccCcccc-HHHHHH
Confidence 444678889999999999999982 24699999999965 4555554333 444443
No 60
>PLN00162 transport protein sec23; Provisional
Probab=97.76 E-value=0.00035 Score=77.78 Aligned_cols=146 Identities=17% Similarity=0.170 Sum_probs=98.5
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEE---------------------
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLV--------------------- 63 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLv--------------------- 63 (404)
+.++|||.|-.- ..++..+.++...+.. ..+...||||||... +.+.-
T Consensus 126 ~fvFvID~s~~~-------~~l~~lk~sl~~~L~~---LP~~a~VGlITF~s~-V~~~~L~~~~~~~~~Vf~g~k~~t~~ 194 (761)
T PLN00162 126 VFVFVVDTCMIE-------EELGALKSALLQAIAL---LPENALVGLITFGTH-VHVHELGFSECSKSYVFRGNKEVSKD 194 (761)
T ss_pred EEEEEEecchhH-------HHHHHHHHHHHHHHHh---CCCCCEEEEEEECCE-EEEEEcCCCCCcceEEecCCccCCHH
Confidence 678999999432 3477777777777764 667889999999864 33321
Q ss_pred -------------------------------------CCCCCHHHHHHHhcCccc------c---CCCcHHHHHHHHHHH
Q 015559 64 -------------------------------------TPTSDLGKILACMHGLEI------G---GELNLAAGIQVAQLA 97 (404)
Q Consensus 64 -------------------------------------tlT~D~~kils~L~~l~~------~---G~~sL~~gL~iA~lA 97 (404)
++..-...|-..|+.|.. . ....++.||++|...
T Consensus 195 ~l~~~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~l 274 (761)
T PLN00162 195 QILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGL 274 (761)
T ss_pred HHHHHhccccccccccccccccccccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHH
Confidence 000000122333334321 1 257799999999999
Q ss_pred hhhcCCCCCCeEEEEEEcCCCCCChh------------------------------HHHHHHHHHHhCCceEEEEEeCCC
Q 015559 98 LKHRQNKKQQQRIIVFVGSPIKHEKK------------------------------VLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 98 LKhr~~k~~~~RIVlFvgSp~~~d~~------------------------------~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
|+.. .++..-||++|++||-+..++ --.++|+++.+++|.||+..++..
T Consensus 275 L~~~-~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~~s~d 353 (761)
T PLN00162 275 LGAC-VPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLD 353 (761)
T ss_pred Hhhc-cCCCceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcchHHHHHHHHHHHHHHcCceEEEEEcccc
Confidence 9864 346788999999998542221 113588999999999999999986
Q ss_pred CCCcHHHHHHHHHHhc
Q 015559 148 DEGNTEKLEALLAAVN 163 (404)
Q Consensus 148 ~~~n~~~L~~~~~~vn 163 (404)
. --..-++.+++.+.
T Consensus 354 q-vglaem~~l~~~TG 368 (761)
T PLN00162 354 Q-VGVAEMKVAVERTG 368 (761)
T ss_pred c-cCHHHHhhhHhhcC
Confidence 6 45667778887664
No 61
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=97.67 E-value=0.00086 Score=63.79 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=84.1
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcC--cc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHG--LE 80 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT--~D~~kils~L~~--l~ 80 (404)
-++||+|+|.||.. | ++ .+-.|+...+.+.+ +|.++.|.... ..++.+- .++...+..+.. ..
T Consensus 59 ~lvvl~DvSGSM~~--~--s~------~~l~~~~~l~~~~~--~~~~f~F~~~l-~~vT~~l~~~~~~~~l~~~~~~~~~ 125 (222)
T PF05762_consen 59 RLVVLCDVSGSMAG--Y--SE------FMLAFLYALQRQFR--RVRVFVFSTRL-TEVTPLLRRRDPEEALARLSALVQS 125 (222)
T ss_pred cEEEEEeCCCChHH--H--HH------HHHHHHHHHHHhCC--CEEEEEEeeeh-hhhhhhhccCCHHHHHHHHHhhccC
Confidence 48999999999963 2 22 23345555555555 89999998763 3333332 366666666652 24
Q ss_pred ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015559 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (404)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (404)
.+|+|+++.+|..+...+... .-.+.-+||+.++--+.+...+....++|+..+.+|..++
T Consensus 126 ~~GgTdi~~aL~~~~~~~~~~--~~~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLn 186 (222)
T PF05762_consen 126 FGGGTDIGQALREFLRQYARP--DLRRTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLN 186 (222)
T ss_pred CCCccHHHHHHHHHHHHhhcc--cccCcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEEC
Confidence 789999999999998777531 1234456666665445678888899999999998776654
No 62
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.56 E-value=0.0015 Score=68.53 Aligned_cols=132 Identities=16% Similarity=0.150 Sum_probs=97.1
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEE-EECCCCCHHHHHHHhcCccccCC
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRV-LVTPTSDLGKILACMHGLEIGGE 84 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~V-LvtlT~D~~kils~L~~l~~~G~ 84 (404)
+++|||-|.||.- ++.++++..+-.++..=...| -.+.++.|.....++ +.++..+..+++.+|..+-.+|
T Consensus 275 villlD~SGSM~G-----~~e~~AKAvalAl~~~alaen--R~~~~~lF~s~~~~~el~~k~~~~~e~i~fL~~~f~GG- 346 (437)
T COG2425 275 VILLLDKSGSMSG-----FKEQWAKAVALALMRIALAEN--RDCYVILFDSEVIEYELYEKKIDIEELIEFLSYVFGGG- 346 (437)
T ss_pred EEEEEeCCCCcCC-----cHHHHHHHHHHHHHHHHHHhc--cceEEEEecccceeeeecCCccCHHHHHHHHhhhcCCC-
Confidence 7999999999963 566677665544444433332 259999999854444 3557779999999999987777
Q ss_pred CcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHH-HHHHHHhCCceEEEEEeCCCC
Q 015559 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEM-IGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~-~ak~LKknnI~VdiI~fG~e~ 148 (404)
|+|..+|..|...+|.+. .....||+++++--.-. .++.. ..+..|..+.+|+.|.+|...
T Consensus 347 TD~~~~l~~al~~~k~~~--~~~adiv~ITDg~~~~~-~~~~~~v~e~~k~~~~rl~aV~I~~~~ 408 (437)
T COG2425 347 TDITKALRSALEDLKSRE--LFKADIVVITDGEDERL-DDFLRKVKELKKRRNARLHAVLIGGYG 408 (437)
T ss_pred CChHHHHHHHHHHhhccc--ccCCCEEEEeccHhhhh-hHHHHHHHHHHHHhhceEEEEEecCCC
Confidence 999999999999999753 34477888877654444 44444 455555899999999999855
No 63
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=97.33 E-value=0.0027 Score=62.98 Aligned_cols=170 Identities=20% Similarity=0.174 Sum_probs=105.6
Q ss_pred eEEEEEeCCh---hh---hCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEEC--------------
Q 015559 5 ATLICIDNSE---WM---RNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVT-------------- 64 (404)
Q Consensus 5 a~vIvIDnSe---sM---rngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvt-------------- 64 (404)
-++++||.+. .| ..++. + +....+|+-.|+++++-+|-.|+|.||.......+-|-|
T Consensus 25 lL~vlId~~p~~Wg~~as~~~~~-t--i~kvl~aivVFlNAHL~~~~~NrvaViA~~~q~~~~lyp~st~~e~~n~~~~~ 101 (314)
T KOG2487|consen 25 LLVVLIDANPCSWGMLASAENWE-T--ISKVLNAIVVFLNAHLAFSRNNRVAVIASHSQVDNYLYPSSTRCEDRNASELD 101 (314)
T ss_pred eEEEEEecCcchhhhhhhhcCce-e--HHHHHHHHHHHHHHHHhhccCCcEEEEEecccccceeccccccCCccCccccC
Confidence 4688999887 23 34444 3 345788999999999999999999999986555455544
Q ss_pred CC----CCH-------HHHHHHhcCc----cc--cC-CCcHHHHHHHHHHHhhhcCC-----CCCCeEEEEEEcCCCCCC
Q 015559 65 PT----SDL-------GKILACMHGL----EI--GG-ELNLAAGIQVAQLALKHRQN-----KKQQQRIIVFVGSPIKHE 121 (404)
Q Consensus 65 lT----~D~-------~kils~L~~l----~~--~G-~~sL~~gL~iA~lALKhr~~-----k~~~~RIVlFvgSp~~~d 121 (404)
|| .++ ..|++-|..+ .. .| .+-+..++.-|+-- -||.+ ..-+.||+||..++....
T Consensus 102 ~t~~~~~~y~~~~~~d~tiv~ei~~lm~~~~~~~~~~rt~lagals~~L~y-i~~~~ke~~~~~lkSRilV~t~t~d~~~ 180 (314)
T KOG2487|consen 102 PTRLVLFDYSEFRTVDDTIVEEIYRLMEHPDKYDVGDRTVLAGALSDALGY-INRLHKEEASEKLKSRILVFTLTRDRAL 180 (314)
T ss_pred chhhhcchhhhhcccchHHHHHHHHHHhCccccccccceeeccchhhccch-HhhhhhhhhhhhhhceEEEEEechHHHh
Confidence 33 111 2233333332 11 12 23333333333221 12222 234789999998776442
Q ss_pred -hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCCchhhhhhhcC
Q 015559 122 -KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLST 187 (404)
Q Consensus 122 -~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~~lLsD~l~ss 187 (404)
-..+-..+-.+.|.||+||++.+|... -+|+.-++.++| -|++++.-+.| --.|+..
T Consensus 181 qyi~~MNciFaAqKq~I~Idv~~l~~~s----~~LqQa~D~TGG----~YL~v~~~~gL-LqyLlt~ 238 (314)
T KOG2487|consen 181 QYIPYMNCIFAAQKQNIPIDVVSLGGDS----GFLQQACDITGG----DYLHVEKPDGL-LQYLLTL 238 (314)
T ss_pred hhhhHHHHHHHHHhcCceeEEEEecCCc----hHHHHHHhhcCC----eeEecCCcchH-HHHHHHH
Confidence 234456777888999999999999875 389999988854 46677643333 3444443
No 64
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=97.30 E-value=0.024 Score=54.99 Aligned_cols=153 Identities=18% Similarity=0.252 Sum_probs=104.5
Q ss_pred ceEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhc----------cCCcCCeEEEEEecCCc----cEE-EECCCCC
Q 015559 4 EATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKT----------QLNPENTVGVMTMAGKG----VRV-LVTPTSD 68 (404)
Q Consensus 4 Ea~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~----------~~NPesqVGLVtmag~~----a~V-LvtlT~D 68 (404)
.-+|+|||-+-.| |=|-|+ --.+++.-+++.|. ..+..+.+|||+|.... +-| .+.+|.|
T Consensus 14 ~~vVfvvEgTAal--gpy~~~---Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~~~~~v~~~g~T~~ 88 (226)
T PF11265_consen 14 AQVVFVVEGTAAL--GPYWNT---LKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCYPEPIVQRSGPTSS 88 (226)
T ss_pred ceEEEEEecchhh--hhhHHH---HHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCCcccceeccCCcCC
Confidence 4588999987655 333333 22234444444333 24577899999998652 223 3679999
Q ss_pred HHHHHHHhcCccccC-----CCcHHHHHHHHHHHhhh----cCC--CC-CCeEEEEEEcCCCC---------CChhHHHH
Q 015559 69 LGKILACMHGLEIGG-----ELNLAAGIQVAQLALKH----RQN--KK-QQQRIIVFVGSPIK---------HEKKVLEM 127 (404)
Q Consensus 69 ~~kils~L~~l~~~G-----~~sL~~gL~iA~lALKh----r~~--k~-~~~RIVlFvgSp~~---------~d~~~l~~ 127 (404)
+.++++.|++|+..| .+++..||..|+..|.. |++ .. ..+..|++..||-. ........
T Consensus 89 ~~~fl~~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP~~~p~~~~~~~~~~~~d~ 168 (226)
T PF11265_consen 89 PQKFLQWLDAIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPPYRLPVNECPQYSGKTCDQ 168 (226)
T ss_pred HHHHHHHHHccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCCccccccCCCcccCCCHHH
Confidence 999999999997753 24588999999988763 322 11 23456777777652 12346789
Q ss_pred HHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCC
Q 015559 128 IGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND 166 (404)
Q Consensus 128 ~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d 166 (404)
++..+.+.||.++||+= .....|+.|.++.+++.
T Consensus 169 la~~~~~~~I~LSiisP-----rklP~l~~Lfeka~~~~ 202 (226)
T PF11265_consen 169 LAVLISERNISLSIISP-----RKLPSLRSLFEKAKGNP 202 (226)
T ss_pred HHHHHHhcCceEEEEcC-----ccCHHHHHHHHhcCCCc
Confidence 99999999999999986 23468999999987654
No 65
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.14 E-value=0.0069 Score=60.50 Aligned_cols=148 Identities=24% Similarity=0.345 Sum_probs=112.2
Q ss_pred cceEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcC-c
Q 015559 3 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHG-L 79 (404)
Q Consensus 3 lEa~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT--~D~~kils~L~~-l 79 (404)
....++++|.|.||.-.. .+....++...+. ..++...+.++++.+ .+.++.+++ .+...+..++.. +
T Consensus 37 ~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~v~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~ 107 (399)
T COG2304 37 PANLTLAIDTSGSMTGAL-LELAKSAAIELVN-------GLNPGDLLSIVTFAG-SADVLIPPTGATNKESITAAIDQSL 107 (399)
T ss_pred CcceEEEeccCCCccchh-HHHHHHHHHHHhc-------ccCCCCceEEEEecC-CcceecCcccccCHHHHHHHHhhhh
Confidence 456789999999998776 5555544444433 578899999999999 679999888 888899999998 7
Q ss_pred cccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC---ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHH
Q 015559 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH---EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLE 156 (404)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~---d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~ 156 (404)
...|.+.+..++..+..-+.+-..+-...++.+..++.... |...+...++..-+.+|.++++|||... |...+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tdg~~~~~~~d~~~~~~~~~~~~~~~i~~~~~g~~~~~--n~~~~~ 185 (399)
T COG2304 108 QAGGATAVEASLSLAVELAAKALPRGTLNRILLLTDGENNLGLVDPSRLSALAKLAAGKGIVLDTLGLGDDV--NEDELT 185 (399)
T ss_pred ccccccHHHHHHHHHHHHhhhcCCccceeeEeeeccCccccCCCCHHHHHHHhcccccCceEEEEEeccccc--chhhhh
Confidence 88999999999999886554422344556666666655543 7777888888888889999999999976 445555
Q ss_pred HHHHH
Q 015559 157 ALLAA 161 (404)
Q Consensus 157 ~~~~~ 161 (404)
.+...
T Consensus 186 ~~~~~ 190 (399)
T COG2304 186 GIAAA 190 (399)
T ss_pred hhhhc
Confidence 55443
No 66
>PTZ00395 Sec24-related protein; Provisional
Probab=97.07 E-value=0.0039 Score=72.42 Aligned_cols=134 Identities=11% Similarity=0.084 Sum_probs=90.7
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc------------------------c-
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG------------------------V- 59 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~------------------------a- 59 (404)
+.+||||+|......=+. .+..+++...+... ..|..+||||||-... +
T Consensus 954 ~YvFLIDVS~~AVkSGLl----~tacesIK~sLDsL--~dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qPQ 1027 (1560)
T PTZ00395 954 YFVFVVECSYNAIYNNIT----YTILEGIRYAVQNV--KCPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNHQ 1027 (1560)
T ss_pred EEEEEEECCHHHHhhChH----HHHHHHHHHHHhcC--CCCCcEEEEEEecCcEEEEecCcccccccccccccccCCCce
Confidence 789999999886554443 44555666666554 2578999999996431 1
Q ss_pred -----------------EEEECCCCCHHHHHHHhcCc------cccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcC
Q 015559 60 -----------------RVLVTPTSDLGKILACMHGL------EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGS 116 (404)
Q Consensus 60 -----------------~VLvtlT~D~~kils~L~~l------~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgS 116 (404)
.+++.|.-....|...|+.| ....+..|+.||+.|..+|+++. ..-||++|.++
T Consensus 1028 MLVVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~G---GGGKIiVF~SS 1104 (1560)
T PTZ00395 1028 VIVMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERN---GLGSICMFYTT 1104 (1560)
T ss_pred EEeecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcC---CCceEEEEEcC
Confidence 13333434445555556555 12357889999999999999852 34588888866
Q ss_pred CCCCChh--------------------HHHHHHHHHHhCCceEEEEEeCCC
Q 015559 117 PIKHEKK--------------------VLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 117 p~~~d~~--------------------~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
.-+..++ --.+++..+.+.+|.||+.-|+..
T Consensus 1105 LPniGpGaLK~Re~~~KEk~Ll~pqd~FYK~LA~ECsk~qISVDLFLfSsq 1155 (1560)
T PTZ00395 1105 TPNCGIGAIKELKKDLQENFLEVKQKIFYDSLLLDLYAFNISVDIFIISSN 1155 (1560)
T ss_pred CCCCCCCcccccccccccccccccchHHHHHHHHHHHhcCCceEEEEccCc
Confidence 5432221 224689999999999999999853
No 67
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=96.87 E-value=0.073 Score=55.95 Aligned_cols=159 Identities=14% Similarity=0.184 Sum_probs=106.4
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc---------------------------
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG--------------------------- 58 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~--------------------------- 58 (404)
+++++|+|.||.+ -++..+.....|..+.-.-....++|+=+|-++-
T Consensus 102 LYyLMDlS~SM~d------dl~~lk~lg~~L~~~m~~it~n~rlGfGsFVDK~v~P~~~t~p~~l~~PC~~~~~~c~p~f 175 (423)
T smart00187 102 LYYLMDLSYSMKD------DLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTRPEKLENPCPNYNLTCEPPY 175 (423)
T ss_pred eEEEEeCCccHHH------HHHHHHHHHHHHHHHHHhcccCceeeEEEeecCccCCcccCCHHHhcCCCcCCCCCcCCCc
Confidence 7899999999974 5777788888888888778888999998887761
Q ss_pred -cEEEECCCCCHHHHHHHhcCccccCCCcH----HHHHHHHHHHhhhcCCCCCCeEEEEEEc-CCCC-------------
Q 015559 59 -VRVLVTPTSDLGKILACMHGLEIGGELNL----AAGIQVAQLALKHRQNKKQQQRIIVFVG-SPIK------------- 119 (404)
Q Consensus 59 -a~VLvtlT~D~~kils~L~~l~~~G~~sL----~~gL~iA~lALKhr~~k~~~~RIVlFvg-Sp~~------------- 119 (404)
.+=+.+||.|...+-..+.+..++|+.+. ..||..|..--++.--+....|||||+. ++.-
T Consensus 176 ~f~~~L~LT~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv~~TDa~fH~AGDGkLaGIv~P 255 (423)
T smart00187 176 GFKHVLSLTDDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTDAGFHFAGDGKLAGIVQP 255 (423)
T ss_pred ceeeeccCCCCHHHHHHHHhhceeecCCcCCcccHHHHHHHHhhccccccCCCceEEEEEEcCCCccccCCcceeeEecC
Confidence 22348899999999999999988876552 3344443322233222345678888862 2110
Q ss_pred ------------------CChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCC
Q 015559 120 ------------------HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 177 (404)
Q Consensus 120 ------------------~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~ 177 (404)
-|=-.+-.++++|+++||.+- ..+-... ..+.+.|.+-+ .+|.+.++..+.
T Consensus 256 NDg~CHL~~~g~Yt~s~~~DYPSi~ql~~kL~e~nI~~I-FAVT~~~---~~~Y~~Ls~li---pgs~vg~Ls~DS 324 (423)
T smart00187 256 NDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENNINPI-FAVTKKQ---VSLYKELSALI---PGSSVGVLSEDS 324 (423)
T ss_pred CCCcceeCCCCCcCccCcCCCCCHHHHHHHHHhcCceEE-EEEcccc---hhHHHHHHHhc---CcceeeecccCc
Confidence 122378899999999999553 2333332 34666666555 356665655543
No 68
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=96.59 E-value=0.11 Score=50.69 Aligned_cols=172 Identities=15% Similarity=0.097 Sum_probs=106.0
Q ss_pred EEEEEeCChhhh-CCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHH--------------
Q 015559 6 TLICIDNSEWMR-NGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLG-------------- 70 (404)
Q Consensus 6 ~vIvIDnSesMr-ngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~-------------- 70 (404)
++++||.-.-.+ --+-+=+|. .....+..|+++++.-|-.|+|.||.--..+.+.|-|-+....
T Consensus 23 L~viid~~p~~W~~~~ek~~~~-kvl~di~VFLNAhlaf~~~NrVaVva~~s~~~~yLypss~s~~k~se~e~tr~sd~y 101 (296)
T COG5242 23 LFVIIDLEPENWELTTEKGSRD-KVLNDIVVFLNAHLAFSRNNRVAVVAGYSQGKTYLYPSSESALKASESENTRNSDMY 101 (296)
T ss_pred EEEEEecChhhcccccccccHH-HHHHHHHHHHHHHHhhccCCeEEEEEeccCceEEeccCcchhhhhhcccCccchhhh
Confidence 466777653222 112222233 3446777899999999999999999876666677654332210
Q ss_pred --------HHHHHhcCc-----cccCCCcHHHHHHHHHHHhhhcCCC-CCCeEEEEEEcCCCCC-Chh-HHHHHHHHHHh
Q 015559 71 --------KILACMHGL-----EIGGELNLAAGIQVAQLALKHRQNK-KQQQRIIVFVGSPIKH-EKK-VLEMIGRKLKK 134 (404)
Q Consensus 71 --------kils~L~~l-----~~~G~~sL~~gL~iA~lALKhr~~k-~~~~RIVlFvgSp~~~-d~~-~l~~~ak~LKk 134 (404)
..++.|.++ +......+..|+..++.-..||+++ ..+.||+||..|.-.. +.- -...-+-.+.|
T Consensus 102 rrfr~vde~~i~eiyrl~e~~~k~sqr~~v~gams~glay~n~~~~e~slkSriliftlsG~d~~~qYip~mnCiF~Aqk 181 (296)
T COG5242 102 RRFRNVDETDITEIYRLIEHPHKNSQRYDVGGAMSLGLAYCNHRDEETSLKSRILIFTLSGRDRKDQYIPYMNCIFAAQK 181 (296)
T ss_pred hhhcccchHHHHHHHHHHhCcccccceeehhhhhhhhHHHHhhhcccccccceEEEEEecCchhhhhhchhhhheeehhh
Confidence 133344333 1223577888888888888888776 3568999998854111 110 11223445678
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCCchhhhhhhcC
Q 015559 135 NSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLST 187 (404)
Q Consensus 135 nnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~~lLsD~l~ss 187 (404)
.||+|++++++... ..|+.-+++++| -|++|..-.. |-..|+++
T Consensus 182 ~~ipI~v~~i~g~s----~fl~Q~~daTgG----~Yl~ve~~eG-llqyL~~~ 225 (296)
T COG5242 182 FGIPISVFSIFGNS----KFLLQCCDATGG----DYLTVEDTEG-LLQYLLSL 225 (296)
T ss_pred cCCceEEEEecCcc----HHHHHHhhccCC----eeEeecCchh-HHHHHHHH
Confidence 99999999998654 478888888754 5666655222 44555555
No 69
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.19 E-value=0.075 Score=56.04 Aligned_cols=151 Identities=16% Similarity=0.175 Sum_probs=97.5
Q ss_pred cceEEEEEeCChhhh-CCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccc
Q 015559 3 LEATLICIDNSEWMR-NGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEI 81 (404)
Q Consensus 3 lEa~vIvIDnSesMr-ngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~ 81 (404)
+-||++.||+|-||. .|-|.|-.-.| -|+..+|+. +-|...|-||+|....-+|- .+.|..+.+
T Consensus 463 ~aAvallvDtS~SM~~eGRw~PmKQtA--LALhHLv~T---rfrGD~l~~i~Fgr~A~~v~----------v~eLt~l~~ 527 (652)
T COG4867 463 QAAVALLVDTSFSMVMEGRWLPMKQTA--LALHHLVCT---RFRGDALQIIAFGRYARTVT----------AAELTGLAG 527 (652)
T ss_pred ccceeeeeeccHHHHHhccCCchHHHH--HHHHHHHHh---cCCCcceEEEeccchhcccC----------HHHHhcCCC
Confidence 458999999999996 67666654322 355566665 55889999999988753331 223334432
Q ss_pred c--CCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCC----------------CChhHHHHHH---HHHHhCCceEE
Q 015559 82 G--GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK----------------HEKKVLEMIG---RKLKKNSVALD 140 (404)
Q Consensus 82 ~--G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~----------------~d~~~l~~~a---k~LKknnI~Vd 140 (404)
- -++++..||.+|...|+.- ++ -.+.||++.++.-+ .||..+.++. .++.+-++.|.
T Consensus 528 v~eqgTNlhhaL~LA~r~l~Rh-~~-~~~~il~vTDGePtAhle~~DG~~~~f~yp~DP~t~~~Tvr~~d~~~r~G~q~t 605 (652)
T COG4867 528 VYEQGTNLHHALALAGRHLRRH-AG-AQPVVLVVTDGEPTAHLEDGDGTSVFFDYPPDPRTIAHTVRGFDDMARLGAQVT 605 (652)
T ss_pred ccccccchHHHHHHHHHHHHhC-cc-cCceEEEEeCCCccccccCCCCceEecCCCCChhHHHHHHHHHHHHHhccceee
Confidence 2 3589999999999999852 33 33344555443221 2455666554 46788999999
Q ss_pred EEEeCCCCCCcHHHHHHHHHHhcC-CCCcEEEEeCC
Q 015559 141 IVNFGEDDEGNTEKLEALLAAVNN-NDSSHLVHVPP 175 (404)
Q Consensus 141 iI~fG~e~~~n~~~L~~~~~~vn~-~d~Shlv~vp~ 175 (404)
+.-+|..- -|..|++.|.- ..+..|+.-|.
T Consensus 606 ~FrLg~Dp-----gL~~Fv~qva~rv~G~vv~pdld 636 (652)
T COG4867 606 IFRLGSDP-----GLARFIDQVARRVQGRVVVPDLD 636 (652)
T ss_pred EEeecCCH-----hHHHHHHHHHHHhCCeEEecCcc
Confidence 99999877 47777777643 23444444433
No 70
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=96.13 E-value=0.16 Score=48.81 Aligned_cols=171 Identities=15% Similarity=0.158 Sum_probs=102.6
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHH------HHHHHHhccCCcCCeE--EEEEecCC-ccEEEECCC--CCHH---
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAA------NLICGAKTQLNPENTV--GVMTMAGK-GVRVLVTPT--SDLG--- 70 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv------~~fv~~k~~~NPesqV--GLVtmag~-~a~VLvtlT--~D~~--- 70 (404)
+++|+||+|.||-..+| ..|.+-. ..++...+ ..|..+| .++-.+|. ...++++-| .+..
T Consensus 5 aLvLavDvS~SVD~~E~-----~lQ~~G~A~Al~dp~V~~Ai~-~g~~g~Iav~~~eWsg~~~q~~~v~Wt~i~~~~da~ 78 (205)
T PF06707_consen 5 ALVLAVDVSGSVDADEY-----RLQREGYAAALRDPEVIAAIL-SGPIGRIAVAVVEWSGPGRQRVVVPWTRIDSPADAE 78 (205)
T ss_pred eeeeeeeccCCCCHHHH-----HHHHHHHHHHHCCHHHHHHHh-cCCCCeEEEEEEEecCCCCceEEeCCEEeCCHHHHH
Confidence 68999999999976555 3444321 12333333 4565555 45556663 346777765 3343
Q ss_pred HHHHHhcCc--cccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChh-HHH-HHHHHHHhCCceEEEEEeCC
Q 015559 71 KILACMHGL--EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKK-VLE-MIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 71 kils~L~~l--~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~-~l~-~~ak~LKknnI~VdiI~fG~ 146 (404)
.+-..|... ...+.|+++.||..|...|.. ++....|-||=|.++...+.+ .+. .+-..+-..||.|+-+.++.
T Consensus 79 a~A~~l~~~~r~~~~~Taig~Al~~a~~ll~~--~~~~~~RrVIDvSGDG~~N~G~~p~~~ard~~~~~GitINgL~I~~ 156 (205)
T PF06707_consen 79 AFAARLRAAPRRFGGRTAIGSALDFAAALLAQ--NPFECWRRVIDVSGDGPNNQGPRPVTSARDAAVAAGITINGLAILD 156 (205)
T ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHHHHHh--CCCCCceEEEEECCCCCCCCCCCccHHHHHHHHHCCeEEeeeEecC
Confidence 444555544 223559999999999999987 444344445555556655444 555 56667888999999999988
Q ss_pred CCCCcH-HHHHHHHHHhcCCCCcEEEEeCCCCchhhhhh
Q 015559 147 DDEGNT-EKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 184 (404)
Q Consensus 147 e~~~n~-~~L~~~~~~vn~~d~Shlv~vp~g~~lLsD~l 184 (404)
...... .+-..|-+.|=++.+++++++ .+..-+.+.+
T Consensus 157 ~~~~~~~~L~~yy~~~VIgGpgAFV~~a-~~~~df~~Ai 194 (205)
T PF06707_consen 157 DDPFGGADLDAYYRRCVIGGPGAFVETA-RGFEDFAEAI 194 (205)
T ss_pred CCCCccccHHHHHhhhcccCCCceEEEc-CCHHHHHHHH
Confidence 772111 244444445555555555544 3433355544
No 71
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=95.81 E-value=0.62 Score=45.94 Aligned_cols=148 Identities=11% Similarity=0.130 Sum_probs=96.9
Q ss_pred eEEEEEeCChhhhCC------C----CCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccE--EEECCC-C----
Q 015559 5 ATLICIDNSEWMRNG------D----YAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR--VLVTPT-S---- 67 (404)
Q Consensus 5 a~vIvIDnSesMrng------D----~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~--VLvtlT-~---- 67 (404)
.+++.||.+.|-.+- - -.||-++.+..++-.++..|-. ...+-+..|+++-.. .+...- +
T Consensus 33 nl~vaIDfT~SNg~p~~~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~---D~~ip~~GFGa~~~~~~~v~~~f~~~~~~ 109 (254)
T cd01459 33 NLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPYDS---DKLIPAFGFGAIVTKDQSVFSFFPGYSES 109 (254)
T ss_pred eEEEEEEeCCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHhcCC---CCceeeEeecccCCCCCccccccCCCCCC
Confidence 578999999874221 1 1478888888888888887643 467778888775321 111110 1
Q ss_pred ----CHHHHHH----HhcCccccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceE
Q 015559 68 ----DLGKILA----CMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVAL 139 (404)
Q Consensus 68 ----D~~kils----~L~~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~V 139 (404)
-...++. +|..+++.|.++|.--|+.|...-++...+..-.-++|++++.+ .|.....+++.++.+.-+.|
T Consensus 110 p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i-~D~~~t~~aIv~AS~~PlSI 188 (254)
T cd01459 110 PECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEI-TDMNETIKAIVEASKYPLSI 188 (254)
T ss_pred CcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCc-ccHHHHHHHHHHHhcCCeEE
Confidence 1244443 55677889999999988888765544222111222333334443 46788888888999999999
Q ss_pred EEEEeCCCCCCcHHHHHHHH
Q 015559 140 DIVNFGEDDEGNTEKLEALL 159 (404)
Q Consensus 140 diI~fG~e~~~n~~~L~~~~ 159 (404)
-+||+|...+ ..|+.|-
T Consensus 189 iiVGVGd~~F---~~M~~LD 205 (254)
T cd01459 189 VIVGVGDGPF---DAMERLD 205 (254)
T ss_pred EEEEeCCCCh---HHHHHhc
Confidence 9999999876 5666663
No 72
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.10 E-value=0.2 Score=56.66 Aligned_cols=171 Identities=19% Similarity=0.232 Sum_probs=103.0
Q ss_pred eEEEEEeCChhh-hCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc-----------c---------EEEE
Q 015559 5 ATLICIDNSEWM-RNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG-----------V---------RVLV 63 (404)
Q Consensus 5 a~vIvIDnSesM-rngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~-----------a---------~VLv 63 (404)
+.|+.||+|-.- +|| -+.+..++++.++..+-..-|.-+||||+|-... + ++.+
T Consensus 419 afvFmIDVSy~Ai~~G-----~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv~dvfv 493 (1007)
T KOG1984|consen 419 AFVFMIDVSYNAISNG-----AVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDVDDVFV 493 (1007)
T ss_pred eEEEEEEeehhhhhcc-----hHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCccccCceEEEeeccccccc
Confidence 678899998442 232 2346778888888887778888999999997531 0 1112
Q ss_pred CCCC-------CHHHHHH-HhcCcc------ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC-C-------
Q 015559 64 TPTS-------DLGKILA-CMHGLE------IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-E------- 121 (404)
Q Consensus 64 tlT~-------D~~kils-~L~~l~------~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~-d------- 121 (404)
|+-+ +-.+++. .|+.|. -.-++-|+.+|+.|.+|||.. + .-+++||..+.-+. .
T Consensus 494 Pf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~--~--gGKl~vF~s~Lpt~g~g~kl~~r 569 (1007)
T KOG1984|consen 494 PFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAA--D--GGKLFVFHSVLPTAGAGGKLSNR 569 (1007)
T ss_pred ccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhcc--C--CceEEEEecccccccCccccccc
Confidence 2211 1122322 333331 124789999999999999984 2 66888888554321 1
Q ss_pred ----------h--------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCC--CCcEEEEeCCCCchhh
Q 015559 122 ----------K--------KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNN--DSSHLVHVPPGPNALS 181 (404)
Q Consensus 122 ----------~--------~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~--d~Shlv~vp~g~~lLs 181 (404)
+ +...++|+.+.+.+|.||+.-|-..- --.+-+-.++..+.|. -..||...-.++.++.
T Consensus 570 ~D~~l~~t~kek~l~~pq~~~y~~LA~e~v~~g~svDlF~t~~ay-vDvAtlg~v~~~TgG~vy~Y~~F~a~~D~~rl~n 648 (1007)
T KOG1984|consen 570 DDRRLIGTDKEKNLLQPQDKTYTTLAKEFVESGCSVDLFLTPNAY-VDVATLGVVPALTGGQVYKYYPFQALTDGPRLLN 648 (1007)
T ss_pred chhhhhcccchhhccCcchhHHHHHHHHHHHhCceEEEEEcccce-eeeeeecccccccCceeEEecchhhcccHHHHHH
Confidence 1 22458999999999999998884422 1223344444333211 0122333334557778
Q ss_pred hhhh
Q 015559 182 DVLL 185 (404)
Q Consensus 182 D~l~ 185 (404)
|...
T Consensus 649 DL~~ 652 (1007)
T KOG1984|consen 649 DLVR 652 (1007)
T ss_pred HHHH
Confidence 8764
No 73
>KOG2326 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku80 autoantigen) [Replication, recombination and repair]
Probab=94.81 E-value=0.61 Score=50.99 Aligned_cols=145 Identities=14% Similarity=0.118 Sum_probs=96.0
Q ss_pred CCcceEEEEEeCChhhhCCCCC-CCHHHHHHHHHHHHHHHhccCC-cCCeEEEEEecCC-------------ccEEEEC-
Q 015559 1 MVLEATLICIDNSEWMRNGDYA-PSRFQAQTEAANLICGAKTQLN-PENTVGVMTMAGK-------------GVRVLVT- 64 (404)
Q Consensus 1 m~lEa~vIvIDnSesMrngD~~-PtRl~Aq~dAv~~fv~~k~~~N-PesqVGLVtmag~-------------~a~VLvt- 64 (404)
|+-|++++++|++.+|.+.+=. -+-|+.++.++..++..|+-.+ --.-||+|.+.-. +..|+-+
T Consensus 2 s~se~ttfilDvG~~Ms~~~~~~~S~fE~a~~y~~~~lsrK~fa~rktD~is~vlyncD~ten~legg~~fqnisvl~p~ 81 (669)
T KOG2326|consen 2 SSSESTTFILDVGPSMSKNNETGKSNFEKAMAYLEYTLSRKSFASRKTDWISCVLYNCDVTENSLEGGNVFQNISVLAPV 81 (669)
T ss_pred CCCcceEEEEecCccccccCCCccccHHHHHHHHHHHHHHHHhhccCCceEEEEEecCCCccCccccccccceeEEeecc
Confidence 4568889999999999999811 2589999999999999987666 5557899887621 1244544
Q ss_pred CCCCHHHHHHHhcCc-ccc-CCCcHHHHHHHHHH-HhhhcCC-CCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEE
Q 015559 65 PTSDLGKILACMHGL-EIG-GELNLAAGIQVAQL-ALKHRQN-KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALD 140 (404)
Q Consensus 65 lT~D~~kils~L~~l-~~~-G~~sL~~gL~iA~l-ALKhr~~-k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~Vd 140 (404)
.|...-.++..+.+. +.+ -..+|..+|-+.+- ...|... +.-.+|+|+..-..++.--++++ ++..|++.+|.+-
T Consensus 82 ~tpaf~~l~k~~~~~~qqns~q~Df~gal~vs~dL~~qhe~~~k~~~kr~Il~~~~l~~dfsd~~~-ive~l~~~didL~ 160 (669)
T KOG2326|consen 82 TTPAFIGLIKRLKQYCQQNSHQSDFEGALSVSQDLLVQHEDIKKQFQKRKILKQIVLFTDFSDDLF-IVEDLTDEDIDLL 160 (669)
T ss_pred cchhhHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhccchhhceEEEEeecccccchhhHH-HHHHHhhcCccee
Confidence 345555666666643 332 24567777766663 4445432 23344544443334444445555 9999999999999
Q ss_pred EEEeCC
Q 015559 141 IVNFGE 146 (404)
Q Consensus 141 iI~fG~ 146 (404)
++|+-.
T Consensus 161 ~~gldf 166 (669)
T KOG2326|consen 161 TEGLDF 166 (669)
T ss_pred EeeccC
Confidence 998754
No 74
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=94.80 E-value=0.0072 Score=36.63 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=12.6
Q ss_pred CCChHHHHHHHHhcccC
Q 015559 320 AEDDPELALALQLSMQD 336 (404)
Q Consensus 320 ~~ee~~ia~a~~ms~~~ 336 (404)
++||++|++||+|||++
T Consensus 1 ~~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 1 MDEDEDLQRALEMSLEE 17 (18)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhhhcc
Confidence 35778888888888764
No 75
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=94.45 E-value=0.011 Score=35.79 Aligned_cols=16 Identities=44% Similarity=0.594 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHhcHHH
Q 015559 222 NLDPELALALRVSMEE 237 (404)
Q Consensus 222 ~~DPELa~ALr~SlEE 237 (404)
++|++|+.||++||+|
T Consensus 2 ~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 2 DEDEDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhcc
Confidence 3689999999999997
No 76
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=94.28 E-value=0.029 Score=36.95 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHhcHHHHHHH
Q 015559 222 NLDPELALALRVSMEEERAR 241 (404)
Q Consensus 222 ~~DPELa~ALr~SlEEe~~r 241 (404)
+.|++|++||++||+|.+.+
T Consensus 1 ~EDe~Lq~Ai~lSl~e~e~~ 20 (26)
T smart00726 1 DEDEDLQLALELSLQEAEES 20 (26)
T ss_pred ChHHHHHHHHHHhHHHhhhc
Confidence 36899999999999998765
No 77
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=1.1 Score=49.93 Aligned_cols=144 Identities=19% Similarity=0.251 Sum_probs=92.7
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEE----------------CCC---
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLV----------------TPT--- 66 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLv----------------tlT--- 66 (404)
.++|||.= .-+.+|++.++++..++.- ..|..-||||+++.. +.|.- .+|
T Consensus 124 f~fVvDtc-------~~eeeL~~LkssL~~~l~l---LP~~alvGlItfg~~-v~v~el~~~~~sk~~VF~G~ke~s~~q 192 (745)
T KOG1986|consen 124 FVFVVDTC-------MDEEELQALKSSLKQSLSL---LPENALVGLITFGTM-VQVHELGFEECSKSYVFSGNKEYSAKQ 192 (745)
T ss_pred EEEEEeec-------cChHHHHHHHHHHHHHHhh---CCCcceEEEEEecce-EEEEEcCCCcccceeEEeccccccHHH
Confidence 36777754 2468999999999888874 677788999999743 23320 111
Q ss_pred --------C----------CHHHHH-----------HHhcCccc------cC---CCcHHHHHHHHHHHhhhcCCCCCCe
Q 015559 67 --------S----------DLGKIL-----------ACMHGLEI------GG---ELNLAAGIQVAQLALKHRQNKKQQQ 108 (404)
Q Consensus 67 --------~----------D~~kil-----------s~L~~l~~------~G---~~sL~~gL~iA~lALKhr~~k~~~~ 108 (404)
. ...+.+ .-|..|++ .| --..+.||.+|...|... -++...
T Consensus 193 ~~~~L~~~~~~~~~~~~~~~~~rFL~P~~~c~~~L~~lle~L~~d~wpV~~g~Rp~RcTG~Al~iA~~Ll~~c-~p~~g~ 271 (745)
T KOG1986|consen 193 LLDLLGLSGGAGKGSENQSASNRFLLPAQECEFKLTNLLEELQPDPWPVPPGHRPLRCTGVALSIASGLLEGC-FPNTGA 271 (745)
T ss_pred HHHHhcCCcccccCCcccccchhhhccHHHHHHHHHHHHHHhcCCCCCCCCCCCcccchhHHHHHHHHHhccc-CCCCcc
Confidence 1 011111 11112222 12 245688888888888764 577899
Q ss_pred EEEEEEcCCCCCCh------------------------------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015559 109 RIIVFVGSPIKHEK------------------------------KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (404)
Q Consensus 109 RIVlFvgSp~~~d~------------------------------~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~ 158 (404)
|||+|+|+|.+..+ +--.++|+++.++|..|||..=+-.. --...++.+
T Consensus 272 rIv~f~gGPcT~GpG~vv~~el~~piRshhdi~~d~a~y~kKa~KfY~~La~r~~~~ghvlDifa~~lDQ-vGi~EMk~l 350 (745)
T KOG1986|consen 272 RIVLFAGGPCTRGPGTVVSRELKEPIRSHHDIEKDNAPYYKKAIKFYEKLAERLANQGHVLDIFAAALDQ-VGILEMKPL 350 (745)
T ss_pred eEEEeccCCCCcCCceecchhhcCCCcCcccccCcchHHHHHHHHHHHHHHHHHHhCCceEeeeeeeccc-cchHHHHHH
Confidence 99999999764221 12257899999999999998776655 344556666
Q ss_pred HHHh
Q 015559 159 LAAV 162 (404)
Q Consensus 159 ~~~v 162 (404)
++.+
T Consensus 351 ~~~T 354 (745)
T KOG1986|consen 351 VEST 354 (745)
T ss_pred hhcC
Confidence 6544
No 78
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=94.00 E-value=1.2 Score=46.17 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=87.2
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc---cc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL---EI 81 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l---~~ 81 (404)
.++|++|.|.+|.-|+-..++|+.+..++-.+.-.-..+ ..+||++++++.. ...++|......+...|..+ .+
T Consensus 226 ~v~l~lD~~~~m~~~~~~~~~~e~av~~a~~la~~~l~~--gd~vg~~~~~~~~-~~~~~p~~G~~~l~~~l~~l~~~~~ 302 (416)
T COG1721 226 TVVLVLDASRSMLFGSGVASKFEEAVRAAASLAYAALKN--GDRVGLLIFGGGG-PKWIPPSRGRRHLARILKALALLRP 302 (416)
T ss_pred eEEEEEeCCccccCCCCCccHHHHHHHHHHHHHHHHHhC--CCeeEEEEECCCc-ceeeCCCcchHHHHHHHHHhhccCC
Confidence 589999999999999999999999999988888876655 5689999998763 67788888877666666554 44
Q ss_pred cCC-CcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 82 GGE-LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 82 ~G~-~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
.+. ++....... ..+.. ..+..++++...........+..+...+.+. +.+-++.|...
T Consensus 303 ~~~~~~~~~~~~~--~~~l~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~ 362 (416)
T COG1721 303 APEETDYIRRVSK--LDFLP----PRRPLVILITDLARHGVDELLLEVLDPLGER-PLVLIVDLRDP 362 (416)
T ss_pred CCcchhHHHHhhh--hhccC----cccceEEEeehhhccccchhhhccccccCCC-ceEEEEEecCC
Confidence 443 333333222 22211 1222344443333222334456666666666 77778888553
No 79
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=93.28 E-value=1.5 Score=39.68 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCcc---EE--EECCCCC--------HHHHH----HHhcCccccCC
Q 015559 22 APSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGV---RV--LVTPTSD--------LGKIL----ACMHGLEIGGE 84 (404)
Q Consensus 22 ~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a---~V--LvtlT~D--------~~kil----s~L~~l~~~G~ 84 (404)
.||.++.+..++-.++..|-..+ .+-+..|+++.+ .+ .-+++.+ ...++ .++.++++.|.
T Consensus 9 ~~N~Y~~ai~~vg~il~~Yd~dk---~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v~l~GP 85 (146)
T PF07002_consen 9 QPNPYQQAIRAVGEILQDYDSDK---MIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKVQLSGP 85 (146)
T ss_pred CCCHHHHHHHHHHHHHHhhccCC---ccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhheEECCC
Confidence 58999999999999999885444 455556776543 11 1335543 33344 45667899999
Q ss_pred CcHHHHHHHHHHHhhh-cCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeC
Q 015559 85 LNLAAGIQVAQLALKH-RQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 145 (404)
Q Consensus 85 ~sL~~gL~iA~lALKh-r~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG 145 (404)
++|.--|+.|...-+. .++..+=...+|++++.++ |.+.-.+++-.+.+.-++|-+||+|
T Consensus 86 T~fapiI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~-D~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 86 TNFAPIINHAAKIAKQSNQNGQQYFILLILTDGQIT-DMEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred ccHHHHHHHHHHHHhhhccCCceEEEEEEecccccc-cHHHHHHHHHHHccCCeEEEEEEeC
Confidence 9999888887765542 2222222334555555544 5666666677777788888888887
No 80
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.72 E-value=0.99 Score=52.79 Aligned_cols=141 Identities=15% Similarity=0.129 Sum_probs=99.7
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEE---------CCCCCHHHHHHH
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLV---------TPTSDLGKILAC 75 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLv---------tlT~D~~kils~ 75 (404)
.++|++|.|.||. +-||..++..++.++..+ -+..-|-|+++.... .-++ --..+...++..
T Consensus 227 diviLlD~SgSm~-----g~~~~lak~tv~~iLdtL---s~~Dfvni~tf~~~~-~~v~pc~~~~lvqAt~~nk~~~~~~ 297 (1104)
T KOG2353|consen 227 DIVILLDVSGSMS-----GLRLDLAKQTVNEILDTL---SDNDFVNILTFNSEV-NPVSPCFNGTLVQATMRNKKVFKEA 297 (1104)
T ss_pred ceEEEEecccccc-----chhhHHHHHHHHHHHHhc---ccCCeEEEEeecccc-CcccccccCceeecchHHHHHHHHH
Confidence 5899999999984 789999999999999974 445677888887653 2222 223567778899
Q ss_pred hcCccccCCCcHHHHHHHHHHHhhhc----CC---CCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 76 MHGLEIGGELNLAAGIQVAQLALKHR----QN---KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 76 L~~l~~~G~~sL~~gL~iA~lALKhr----~~---k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
+..+++.|.+++..|+..|...|..- .+ ....+-|++|..+.. ++...+++.--.= ...|||.+..+|.+.
T Consensus 298 i~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~-~~~~~If~~yn~~-~~~Vrvftflig~~~ 375 (1104)
T KOG2353|consen 298 IETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVD-ENAKEIFEKYNWP-DKKVRVFTFLIGDEV 375 (1104)
T ss_pred HhhhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCc-ccHHHHHHhhccC-CCceEEEEEEecccc
Confidence 99999999999999999999877531 11 225566777765442 2333443322111 578999999999988
Q ss_pred CCcHHHHHH
Q 015559 149 EGNTEKLEA 157 (404)
Q Consensus 149 ~~n~~~L~~ 157 (404)
.+...++-
T Consensus 376 -~~~~~~~w 383 (1104)
T KOG2353|consen 376 -YDLDEIQW 383 (1104)
T ss_pred -cccccchh
Confidence 56555443
No 81
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=92.46 E-value=3.1 Score=43.98 Aligned_cols=159 Identities=16% Similarity=0.224 Sum_probs=94.2
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCC----------------------------
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGK---------------------------- 57 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~---------------------------- 57 (404)
+++++|+|.||++ -|+-.+.....|....-+.-...++|+=+|.++
T Consensus 105 LYyLmDlS~Sm~d------dl~~l~~lg~~l~~~~~~it~~~~~GfGsfvdK~~~P~~~~~p~~l~~pc~~~~~~c~~~~ 178 (426)
T PF00362_consen 105 LYYLMDLSYSMKD------DLENLKSLGQDLAEEMRNITSNFRLGFGSFVDKPVMPFVSTTPEKLKNPCPSKNPNCQPPF 178 (426)
T ss_dssp EEEEEE-SGGGHH------HHHHHCCCCHHHHHHHHTT-SSEEEEEEEESSSSSTTTST-SSHCHHSTSCCTTS--B---
T ss_pred EEEEeechhhhhh------hHHHHHHHHHHHHHHHHhcCccceEechhhcccccCCcccCChhhhcCcccccCCCCCCCe
Confidence 6899999999974 233334444445555555566789999998876
Q ss_pred ccEEEECCCCCHHHHHHHhcCccccCCCcH----HHHHHHHHHHhhhcCCCCCCeEEEEEE-cCC------------C--
Q 015559 58 GVRVLVTPTSDLGKILACMHGLEIGGELNL----AAGIQVAQLALKHRQNKKQQQRIIVFV-GSP------------I-- 118 (404)
Q Consensus 58 ~a~VLvtlT~D~~kils~L~~l~~~G~~sL----~~gL~iA~lALKhr~~k~~~~RIVlFv-gSp------------~-- 118 (404)
+.+-..+||.|..++...+++..+.|+.+. ..||..|..--++..=+....|||||+ +++ +
T Consensus 179 ~f~~~l~Lt~~~~~F~~~v~~~~is~n~D~PEgg~dal~Qa~vC~~~igWr~~a~~llv~~TD~~fH~agDg~l~gi~~p 258 (426)
T PF00362_consen 179 SFRHVLSLTDDITEFNEEVNKQKISGNLDAPEGGLDALMQAAVCQEEIGWRNEARRLLVFSTDAGFHFAGDGKLAGIVKP 258 (426)
T ss_dssp SEEEEEEEES-HHHHHHHHHTS--B--SSSSBSHHHHHHHHHH-HHHHT--STSEEEEEEEESS-B--TTGGGGGT--S-
T ss_pred eeEEeecccchHHHHHHhhhhccccCCCCCCccccchheeeeecccccCcccCceEEEEEEcCCccccccccccceeeec
Confidence 234467889999999999999887764332 234444333222221234567888876 111 1
Q ss_pred ---CC--------------ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCC
Q 015559 119 ---KH--------------EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 177 (404)
Q Consensus 119 ---~~--------------d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~ 177 (404)
.+ |=-.+-.+.++|.++||.+ |..+-.. ...+.+.|.+.+ .++.+..+-...
T Consensus 259 nd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~~i~~-IFAVt~~---~~~~Y~~L~~~i---~~s~vg~L~~dS 327 (426)
T PF00362_consen 259 NDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSENNINP-IFAVTKD---VYSIYEELSNLI---PGSSVGELSSDS 327 (426)
T ss_dssp --SS--BSTTSBBGGGGCS----HHHHHHHHHHTTEEE-EEEEEGG---GHHHHHHHHHHS---TTEEEEEESTTS
T ss_pred CCCceEECCCCcccccccccCCCHHHHHHHHHHcCCEE-EEEEchh---hhhHHHHHhhcC---CCceecccccCc
Confidence 01 2235678999999999954 3344333 345788888777 577888877754
No 82
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=92.43 E-value=2 Score=48.41 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=91.1
Q ss_pred eEEEEEeCChh-hhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEE-ECCCCC--------------
Q 015559 5 ATLICIDNSEW-MRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVL-VTPTSD-------------- 68 (404)
Q Consensus 5 a~vIvIDnSes-MrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VL-vtlT~D-------------- 68 (404)
..|+.||+|-. |.+|= +.+..+++..-+..+-+-.|..+|++|.+-.+. ..+ .+|.-|
T Consensus 278 ~yvFlIDVS~~a~~~g~-----~~a~~r~Il~~l~~~~~~dpr~kIaii~fD~sl-~ffk~s~d~~~~~~~vsdld~pFl 351 (861)
T COG5028 278 VYVFLIDVSFEAIKNGL-----VKAAIRAILENLDQIPNFDPRTKIAIICFDSSL-HFFKLSPDLDEQMLIVSDLDEPFL 351 (861)
T ss_pred EEEEEEEeehHhhhcch-----HHHHHHHHHhhccCCCCCCCcceEEEEEEccee-eEEecCCCCccceeeecccccccc
Confidence 57899999954 44442 235555666555555566799999999998753 332 222221
Q ss_pred ------------HHHH-----HHHhcCccc---cCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCC---------
Q 015559 69 ------------LGKI-----LACMHGLEI---GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK--------- 119 (404)
Q Consensus 69 ------------~~ki-----ls~L~~l~~---~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~--------- 119 (404)
..++ +.....+-. .-...++.||++|++.++. .+-+||+|+++.-+
T Consensus 352 Pf~s~~fv~pl~~~k~~~etLl~~~~~If~d~~~pk~~~G~aLk~a~~l~g~-----~GGkii~~~stlPn~G~Gkl~~r 426 (861)
T COG5028 352 PFPSGLFVLPLKSCKQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGG-----TGGKIIVFLSTLPNMGIGKLQLR 426 (861)
T ss_pred cCCcchhcccHHHHHHHHHHHHHHhhhhhcccCCCccccCHHHHHHHHHhhc-----cCceEEEEeecCCCccccccccc
Confidence 0011 111111211 2367899999999998875 55678888866221
Q ss_pred ---------CChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 015559 120 ---------HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (404)
Q Consensus 120 ---------~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~v 162 (404)
+..+--.+++..+-|-+|.||+--+.+.- --..-+-.++.-+
T Consensus 427 ~d~e~~ll~c~d~fYk~~a~e~~k~gIsvd~Flt~~~y-idvaTls~l~~~T 477 (861)
T COG5028 427 EDKESSLLSCKDSFYKEFAIECSKVGISVDLFLTSEDY-IDVATLSHLCRYT 477 (861)
T ss_pred ccchhhhccccchHHHHHHHHHHHhcceEEEEeccccc-cchhhhcchhhcc
Confidence 22222357899999999999999997754 3445566666544
No 83
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=91.87 E-value=0.073 Score=35.08 Aligned_cols=20 Identities=40% Similarity=0.745 Sum_probs=15.6
Q ss_pred CChHHHHHHHHhcccCCCCC
Q 015559 321 EDDPELALALQLSMQDGTKD 340 (404)
Q Consensus 321 ~ee~~ia~a~~ms~~~~~~~ 340 (404)
+||++|++||+||+++.+..
T Consensus 1 ~EDe~Lq~Ai~lSl~e~e~~ 20 (26)
T smart00726 1 DEDEDLQLALELSLQEAEES 20 (26)
T ss_pred ChHHHHHHHHHHhHHHhhhc
Confidence 47888999999999876543
No 84
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=90.92 E-value=7.3 Score=37.95 Aligned_cols=136 Identities=21% Similarity=0.278 Sum_probs=71.7
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCe-EEEEEecCCccEE---EE--CCCCCHHHHHHHhcC
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENT-VGVMTMAGKGVRV---LV--TPTSDLGKILACMHG 78 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesq-VGLVtmag~~a~V---Lv--tlT~D~~kils~L~~ 78 (404)
++-|+||+|.||+. .|-.+ +..++-.|++.+-..+--.. +|+-|.+-++... +. --+..++.+..-+|-
T Consensus 14 ~VtlLID~SGSMrg---r~~~v--A~~~adila~aL~~~gvp~EVlGFtT~aw~gg~~~~~w~~~G~p~~pgrln~l~h~ 88 (219)
T PF11775_consen 14 VVTLLIDCSGSMRG---RPIEV--AALCADILARALERCGVPVEVLGFTTRAWKGGRSREAWLAAGRPRYPGRLNDLRHI 88 (219)
T ss_pred EEEEEEeCCcCCCC---ChHHH--HHHHHHHHHHHHHhCCCCeEEEeeecCCcCCcchHHHHHhcCCCCCChHHHHHHHH
Confidence 56799999999997 33333 33334444444433433333 3665553221111 00 012345555444443
Q ss_pred c---------------------cc-cCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEE-cCCCC------CC----hhHH
Q 015559 79 L---------------------EI-GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIK------HE----KKVL 125 (404)
Q Consensus 79 l---------------------~~-~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFv-gSp~~------~d----~~~l 125 (404)
+ .+ .-+.+ +.||..|..-|..|+. .++-+|||+ |.|.. .+ ..+|
T Consensus 89 vyk~a~~~wrraR~~l~~m~~~~~~~eniD-GeAl~~a~~rL~~r~e--~rkiLiViSDG~P~d~st~~~n~~~~L~~HL 165 (219)
T PF11775_consen 89 VYKDADTPWRRARRNLGLMMREGLLKENID-GEALRWAAERLLARPE--QRKILIVISDGAPADDSTLSANDGDYLDAHL 165 (219)
T ss_pred HHHhcCChhhhHHHhHHHHhhccccccCCc-HHHHHHHHHHHHcCCc--cceEEEEEeCCCcCcccccccCChHHHHHHH
Confidence 2 11 12333 5788888888876532 443344444 44441 12 2466
Q ss_pred HHHHHHHHh-CCceEEEEEeCCCC
Q 015559 126 EMIGRKLKK-NSVALDIVNFGEDD 148 (404)
Q Consensus 126 ~~~ak~LKk-nnI~VdiI~fG~e~ 148 (404)
..+++...+ .+|.+--||+|...
T Consensus 166 r~vi~~ie~~~~Vel~aiGIg~D~ 189 (219)
T PF11775_consen 166 RQVIAEIETRSDVELIAIGIGHDV 189 (219)
T ss_pred HHHHHHHhccCCcEEEEEEcCCCc
Confidence 777777765 47888888887655
No 85
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=90.14 E-value=2.3 Score=46.70 Aligned_cols=59 Identities=19% Similarity=0.369 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhhcCCCCCCeEEEEEE-cCCCCC-----C-----hhHHHHHHHHHHhC-CceEEEEEeCCCC
Q 015559 88 AAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIKH-----E-----KKVLEMIGRKLKKN-SVALDIVNFGEDD 148 (404)
Q Consensus 88 ~~gL~iA~lALKhr~~k~~~~RIVlFv-gSp~~~-----d-----~~~l~~~ak~LKkn-nI~VdiI~fG~e~ 148 (404)
+.||+.|+.-|.+|+. .++-+|||+ |.|... + ..+|-.+++...+. +|-+--||+|..+
T Consensus 499 GeAl~wa~~rL~~R~e--~rKiL~ViSDG~P~D~~TlsvN~~~~l~~hLr~vi~~~e~~~~vel~aigIg~Dv 569 (600)
T TIGR01651 499 GEALMWAHQRLIARPE--QRRILMMISDGAPVDDSTLSVNPGNYLERHLRAVIEEIETRSPVELLAIGIGHDV 569 (600)
T ss_pred hHHHHHHHHHHhcCcc--cceEEEEEeCCCcCCccccccCchhHHHHHHHHHHHHHhccCCceEEEeeccccH
Confidence 6789999998888743 444445554 444421 1 34577788888775 8999999998765
No 86
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=89.55 E-value=8.4 Score=42.07 Aligned_cols=107 Identities=16% Similarity=0.155 Sum_probs=74.3
Q ss_pred cceEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcccc
Q 015559 3 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIG 82 (404)
Q Consensus 3 lEa~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~~ 82 (404)
++.++.|.|+|.||--. -....-++-.+|.+.. .|--.=.+|||... |+++.=-..+...-+..+.+..-+
T Consensus 340 l~n~iav~DvSGSM~~~------pm~vaiaLgll~ae~~--~~pf~~~~ITFs~~-P~~~~i~g~~l~ekv~~~~~~~wg 410 (534)
T PF11443_consen 340 LENCIAVCDVSGSMSGP------PMDVAIALGLLIAELN--KGPFKGRFITFSEN-PQLHKIKGDTLREKVRFIRRMDWG 410 (534)
T ss_pred ccceEEEEecCCccCcc------HHHHHHHHHHHHHHhc--ccccCCeEEeecCC-ceEEEecCCCHHHHHHHHHhCCcc
Confidence 68999999999999877 3344557777787763 33345578999987 665533333677777788888889
Q ss_pred CCCcHHHHHHHHH-HHhhhcC-CCCCCeEEEEEEcCCC
Q 015559 83 GELNLAAGIQVAQ-LALKHRQ-NKKQQQRIIVFVGSPI 118 (404)
Q Consensus 83 G~~sL~~gL~iA~-lALKhr~-~k~~~~RIVlFvgSp~ 118 (404)
++|+|+....+-+ .|.++.- ...-.+||+||++=-.
T Consensus 411 ~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfV~SDMeF 448 (534)
T PF11443_consen 411 MNTNFQAVFDLILETAVKNKLKQEDMPKRLFVFSDMEF 448 (534)
T ss_pred cCCcHHHHHHHHHHHHHHcCCChHHCCceEEEEecccc
Confidence 9999999997776 4565531 1234578888874333
No 87
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=86.17 E-value=3.5 Score=36.14 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=52.0
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc--cccC
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL--EIGG 83 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l--~~~G 83 (404)
++|+||+|.||.+.++. ||.+ .+..+++.+ ..+|-||.+-.. ..-...+.. ....+..+ .-+|
T Consensus 1 i~vaiDtSGSis~~~l~--~fl~---ev~~i~~~~-----~~~v~vi~~D~~-v~~~~~~~~----~~~~~~~~~~~GgG 65 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELR--RFLS---EVAGILRRF-----PAEVHVIQFDAE-VQDVQVFRS----LEDELRDIKLKGGG 65 (126)
T ss_pred CEEEEECCCCCCHHHHH--HHHH---HHHHHHHhC-----CCCEEEEEECCE-eeeeeEEec----ccccccccccCCCC
Confidence 57999999999765543 3433 333445543 335777765432 333333333 11223333 3467
Q ss_pred CCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCC
Q 015559 84 ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPI 118 (404)
Q Consensus 84 ~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~ 118 (404)
+|+|.-+++-+.. ++ ....-+|+|+++-.
T Consensus 66 GTdf~pvf~~~~~---~~---~~~~~vi~fTDg~~ 94 (126)
T PF09967_consen 66 GTDFRPVFEYLEE---NR---PRPSVVIYFTDGEG 94 (126)
T ss_pred CCcchHHHHHHHh---cC---CCCCEEEEEeCCCC
Confidence 8999988887653 32 23344667877554
No 88
>PF10221 DUF2151: Cell cycle and development regulator; InterPro: IPR019355 This entry represents the cell cycle regulator Mat89b, which plays an evolutionarily conserved role as a crucial regulator of both cell cycle and development []. Mat89Bb is a PNG kinase substrate that is essential for S-M cycles of early Drosophila embryogenesis, Xenopus embryonic cell cycles and morphogenesis, and cell division in cultured mammalian cells.
Probab=84.10 E-value=11 Score=42.51 Aligned_cols=120 Identities=17% Similarity=0.273 Sum_probs=86.5
Q ss_pred EEEEEeCChhhhC------------------CCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC-
Q 015559 6 TLICIDNSEWMRN------------------GDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT- 66 (404)
Q Consensus 6 ~vIvIDnSesMrn------------------gD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT- 66 (404)
||||||-|.||.. .=+..|=|.|+.+|+-++|+=.++.-|....=-+++++..+..|-+-+
T Consensus 8 TVfVLDh~p~f~~ss~~~i~~d~~~~~~~~~~~i~KSLWTc~vEa~~EYcRIV~DlFP~~k~IrfivsD~~a~~lntW~~ 87 (695)
T PF10221_consen 8 TVFVLDHSPYFAESSNQPIDFDIVKKSRQQKAPISKSLWTCAVEASIEYCRIVWDLFPDGKLIRFIVSDTAAHILNTWST 87 (695)
T ss_pred EEEEEcCCchhhhhccCcEEEeeecCCCCCcCcccchHHHHHHHHHHHHHHHHhhccCCCceEEEEEEccccccccCcCh
Confidence 7999999999842 123357899999999999999999999888855666677778876644
Q ss_pred --CCHHHHHHHhcCcccc-------CCCcHHHHHHHHHHHhhhcCC----------------CCCCeEEEEEEcCCCCCC
Q 015559 67 --SDLGKILACMHGLEIG-------GELNLAAGIQVAQLALKHRQN----------------KKQQQRIIVFVGSPIKHE 121 (404)
Q Consensus 67 --~D~~kils~L~~l~~~-------G~~sL~~gL~iA~lALKhr~~----------------k~~~~RIVlFvgSp~~~d 121 (404)
.+...++..|-.+.+- .++++..||.+|..||-+... -..+.|||+|+.-....+
T Consensus 88 ~~Qsl~~L~~~la~vG~P~~~~~~~~d~svi~GL~~AIEaL~e~td~Q~e~~~~~~~~~~~~~~N~GrIIciT~~k~d~~ 167 (695)
T PF10221_consen 88 SQQSLSHLMNALATVGPPPRSDPENSDYSVIHGLRMAIEALAEPTDSQKEQRASRVNEELKKVENRGRIICITSAKSDES 167 (695)
T ss_pred hhccHHHHHHHHHhcCCCCCCCcccccchhHHHHHHHHHHHhcCCHHHHHHhhcccchhhhhccCCccEEEEEeecCcHH
Confidence 4566777788776322 346899999999998864210 125679999986555444
Q ss_pred hhHH
Q 015559 122 KKVL 125 (404)
Q Consensus 122 ~~~l 125 (404)
-..|
T Consensus 168 m~~L 171 (695)
T PF10221_consen 168 MRSL 171 (695)
T ss_pred HHHH
Confidence 4444
No 89
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=81.83 E-value=8.4 Score=42.17 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=53.8
Q ss_pred HhcCccccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC-C----h---hHHHHHHHHHHhCCceEEEEEeCC
Q 015559 75 CMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-E----K---KVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 75 ~L~~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~-d----~---~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
.|-.++|+--+..+.||+.|..-|-||++ +++=.|||+++.-+. | . .+-..++-..+|.||.|.-|-+..
T Consensus 523 RImALePg~ytR~G~AIR~As~kL~~rpq--~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV~eaRk~Gi~VF~Vtld~ 600 (637)
T COG4548 523 RIMALEPGYYTRDGAAIRHASAKLMERPQ--RQKLLIVLSDGKPNDFDHYEGRFGIEDTREAVIEARKSGIEVFNVTLDR 600 (637)
T ss_pred hheecCccccccccHHHHHHHHHHhcCcc--cceEEEEecCCCcccccccccccchhhHHHHHHHHHhcCceEEEEEecc
Confidence 44566788889999999999999999753 555578887665542 3 1 244567888999999999888876
Q ss_pred CC
Q 015559 147 DD 148 (404)
Q Consensus 147 e~ 148 (404)
+.
T Consensus 601 ea 602 (637)
T COG4548 601 EA 602 (637)
T ss_pred hh
Confidence 55
No 90
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=81.53 E-value=25 Score=32.32 Aligned_cols=55 Identities=25% Similarity=0.189 Sum_probs=37.0
Q ss_pred CCeEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhcC
Q 015559 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVNN 164 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~L~~~~~~vn~ 164 (404)
....+|+|+|..... ....+.++++++++. ++.+.++|-|... ..++.+++..+.
T Consensus 187 ~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~----~~~~~~~~~~~~ 244 (353)
T cd03811 187 PDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLR----EELEALAKELGL 244 (353)
T ss_pred CCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCccH----HHHHHHHHhcCC
Confidence 445678888876533 556788889999886 6777777655433 456677766653
No 91
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=81.00 E-value=53 Score=31.38 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=30.6
Q ss_pred CCeEEEEEEcCCCCC-ChhHHHHHHHHHHh--CCceEEEEEeCCCC
Q 015559 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKK--NSVALDIVNFGEDD 148 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~ak~LKk--nnI~VdiI~fG~e~ 148 (404)
....+|+|+|..... ....+.+++++|++ .++.+.+||-|...
T Consensus 183 ~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~ 228 (355)
T cd03819 183 KGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGR 228 (355)
T ss_pred CCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCccc
Confidence 344577787765433 56778899999988 57788888877644
No 92
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=80.23 E-value=10 Score=34.63 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 89 AGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 89 ~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
.|..+|...+++.. .+...+|+||+|+- .+-++-+.+|+.|...++.|.|+.++...
T Consensus 8 Ag~~~a~~i~~~~~-~~~~~~v~il~G~G--nNGgDgl~~AR~L~~~G~~V~v~~~~~~~ 64 (169)
T PF03853_consen 8 AGRAIAELIRKLFG-SPKGPRVLILCGPG--NNGGDGLVAARHLANRGYNVTVYLVGPPE 64 (169)
T ss_dssp HHHHHHHHHHHHST-CCTT-EEEEEE-SS--HHHHHHHHHHHHHHHTTCEEEEEEEESSS
T ss_pred HHHHHHHHHHHHhc-ccCCCeEEEEECCC--CChHHHHHHHHHHHHCCCeEEEEEEeccc
Confidence 35666776665542 45667888887754 35688899999999999999998887754
No 93
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=78.08 E-value=39 Score=36.99 Aligned_cols=146 Identities=12% Similarity=0.099 Sum_probs=89.6
Q ss_pred EEEEEeCChhh---------hCCC-CCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccE---EE--ECCCCC--
Q 015559 6 TLICIDNSEWM---------RNGD-YAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR---VL--VTPTSD-- 68 (404)
Q Consensus 6 ~vIvIDnSesM---------rngD-~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~---VL--vtlT~D-- 68 (404)
++|.||.+.|- ..-| ..||=++-+..+|-.+|+.|-.. .++.-..|+.+.+- |- -.+..+
T Consensus 288 f~vgIDfTaSNg~p~~~sSLHyi~p~~~N~Y~~Ai~~vG~~lq~ydsd---k~fpa~GFGakip~~~~vs~~f~ln~~~~ 364 (529)
T KOG1327|consen 288 FTVGIDFTASNGDPRNPSSLHYIDPHQPNPYEQAIRSVGETLQDYDSD---KLFPAFGFGAKIPPDGQVSHEFVLNFNPE 364 (529)
T ss_pred eEEEEEEeccCCCCCCCCcceecCCCCCCHHHHHHHHHhhhhcccCCC---CccccccccccCCCCcccccceeecCCCC
Confidence 57888888752 2223 77999999999999999987544 44444446554221 10 011112
Q ss_pred ------HHHHH----HHhcCccccCCCcHHHHHHHHHHHhhhcCCCCCCe--EEEEEEcCCCCCChhHHHHHHHHHHhCC
Q 015559 69 ------LGKIL----ACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQ--RIIVFVGSPIKHEKKVLEMIGRKLKKNS 136 (404)
Q Consensus 69 ------~~kil----s~L~~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~--RIVlFvgSp~~~d~~~l~~~ak~LKknn 136 (404)
..-++ .+|-.+++.|.|+|.-=|..|..--+.-.+ ..++ .+||+.++-+ +|.+.-.+++=.+-+.=
T Consensus 365 ~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~-~~~qY~VLlIitDG~v-Tdm~~T~~AIV~AS~lP 442 (529)
T KOG1327|consen 365 DPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGN-TAGQYHVLLIITDGVV-TDMKETRDAIVSASDLP 442 (529)
T ss_pred CCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhcc-CCcceEEEEEEeCCcc-ccHHHHHHHHHhhccCC
Confidence 22333 355567889999987666544432221101 1222 3344444443 45777777787888899
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHH
Q 015559 137 VALDIVNFGEDDEGNTEKLEALL 159 (404)
Q Consensus 137 I~VdiI~fG~e~~~n~~~L~~~~ 159 (404)
.+|-|||+|...+ +-++.|.
T Consensus 443 lSIIiVGVGd~df---~~M~~lD 462 (529)
T KOG1327|consen 443 LSIIIVGVGDADF---DMMRELD 462 (529)
T ss_pred eEEEEEEeCCCCH---HHHHHhh
Confidence 9999999998886 6777775
No 94
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=77.18 E-value=1.3 Score=42.57 Aligned_cols=28 Identities=32% Similarity=0.717 Sum_probs=25.1
Q ss_pred CCHHHHHHHHhcCC--------------CCCCC-ChHHHHHHH
Q 015559 352 ADQAFVSSILASLP--------------GVDPE-DPSVKDVLT 379 (404)
Q Consensus 352 ~d~~f~~s~l~~lp--------------gvdp~-~~~i~~~l~ 379 (404)
-.|.||..+|...| ||||| ||.+-.||+
T Consensus 173 P~p~ll~~~~~~spig~g~~g~~~~~e~gvDp~lDpELA~Alr 215 (243)
T COG5148 173 PNPELLDRVLPFSPIGQGVVGDDLQLEYGVDPNLDPELAEALR 215 (243)
T ss_pred CCHHHHHhhccCCccccccccCccceecCCCCCCCHHHHHHHH
Confidence 57999999999988 69999 999999886
No 95
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.91 E-value=60 Score=37.39 Aligned_cols=143 Identities=17% Similarity=0.161 Sum_probs=87.0
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEE-----------------------
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRV----------------------- 61 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~V----------------------- 61 (404)
..+++||+|-+...--| |+..+.++..=++.+= -+|..+||+|++-... ..
T Consensus 296 vy~FliDVS~~a~ksG~----L~~~~~slL~~LD~lp-gd~Rt~igfi~fDs~i-hfy~~~~~~~qp~mm~vsdl~d~fl 369 (887)
T KOG1985|consen 296 VYVFLIDVSISAIKSGY----LETVARSLLENLDALP-GDPRTRIGFITFDSTI-HFYSVQGDLNQPQMMIVSDLDDPFL 369 (887)
T ss_pred eEEEEEEeehHhhhhhH----HHHHHHHHHHhhhcCC-CCCcceEEEEEeecee-eEEecCCCcCCCceeeecccccccc
Confidence 45789999987653322 3344444444444332 5699999999997532 21
Q ss_pred ------EECCCCCHHHHHHHhcCcc------ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC---------
Q 015559 62 ------LVTPTSDLGKILACMHGLE------IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH--------- 120 (404)
Q Consensus 62 ------LvtlT~D~~kils~L~~l~------~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~--------- 120 (404)
|++|-.-...|-..|+++. -.-+..|+.||+.|...+.. ..-||++|..++-+-
T Consensus 370 p~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~~~t~~alGpALkaaf~li~~-----~GGri~vf~s~lPnlG~G~L~~rE 444 (887)
T KOG1985|consen 370 PMPDSLLVPLKECKDLIETLLKTLPEMFQDTRSTGSALGPALKAAFNLIGS-----TGGRISVFQSTLPNLGAGKLKPRE 444 (887)
T ss_pred CCchhheeeHHHHHHHHHHHHHHHHHHHhhccCcccccCHHHHHHHHHHhh-----cCCeEEEEeccCCCCCcccccccc
Confidence 1222222222334444431 12367899999999988875 444999998765431
Q ss_pred C-------hhH---------HHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 015559 121 E-------KKV---------LEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 159 (404)
Q Consensus 121 d-------~~~---------l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~ 159 (404)
+ +.. -.+++-.+.|-+|.||.--|...- .-.+-|..|.
T Consensus 445 dp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY-~DlAsLs~Ls 498 (887)
T KOG1985|consen 445 DPNVRSSDEDSQLLSPATDFYKDLALECSKSQICVDLFLFSEQY-TDLASLSCLS 498 (887)
T ss_pred ccccccchhhhhccCCCchHHHHHHHHhccCceEEEEEeecccc-cchhhhhccc
Confidence 1 111 146788899999999999998765 3444455443
No 96
>KOG2327 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku70 autoantigen) [Replication, recombination and repair]
Probab=76.72 E-value=29 Score=38.35 Aligned_cols=141 Identities=18% Similarity=0.259 Sum_probs=89.2
Q ss_pred cceEEEEEeCChhhhCCC---CCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc------cEEEEC----CCCCH
Q 015559 3 LEATLICIDNSEWMRNGD---YAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG------VRVLVT----PTSDL 69 (404)
Q Consensus 3 lEa~vIvIDnSesMrngD---~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~------a~VLvt----lT~D~ 69 (404)
.|++.+|||.|.+|+.++ +.++=|.....++..++-.+.=.||...+|++..+... -..+.+ ++.-.
T Consensus 18 ~~~ilfvi~~~~s~~~~~~~e~~lspl~~~L~~~~~l~~~~vitn~~~~~~v~~y~~~~~~~~~~~~~l~~l~d~~~~~~ 97 (602)
T KOG2327|consen 18 KEAILFVIDVNPSMKAEEPDEFKLSPLKMILDCIDRLCIQLVITNPIDSVGVLFYGTEETEGLENNTLLFPLGDLGQEEV 97 (602)
T ss_pred ccceEEEEecCHHhhccCcccchhhhHHHHHHHHHHHHhheeecCCCCccceEeecccccccCccceEEeeccccChHHH
Confidence 589999999999999876 45888999999999999998889999999998776432 122222 22333
Q ss_pred HHHHHHhcC------ccccC----CCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC--ChhHHHHHHHHHHhCCc
Q 015559 70 GKILACMHG------LEIGG----ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSV 137 (404)
Q Consensus 70 ~kils~L~~------l~~~G----~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~--d~~~l~~~ak~LKknnI 137 (404)
.+|+.-... +...| ...|.+-|......+-..+.+...+||.+|+.-+... +..+.....+++|...-
T Consensus 98 ~k~~~~~e~~~q~~~~~~~~~~~~~s~ls~vl~~c~~~~~~~~~~~~~krv~l~Td~d~P~~~~~~~~~a~l~r~k~~~~ 177 (602)
T KOG2327|consen 98 KKILELFEEENQLSAVNFYGGMHQKSDLSNVLNYCKRMVFASQKKLSNKRVFLFTDNDNPHERDDFLESAHLQRAKDLVT 177 (602)
T ss_pred HHHHHHhhhhhhhhhhhccCcccccccHHHHHHHHHHHHHHHhhhcccceEEEEecCCCcccccchHHHhhhhhhhhccc
Confidence 344332221 11111 2357777777765443334566778999998766643 33333333444433332
Q ss_pred eEEEEEeC
Q 015559 138 ALDIVNFG 145 (404)
Q Consensus 138 ~VdiI~fG 145 (404)
.+|+|+
T Consensus 178 --~~i~~~ 183 (602)
T KOG2327|consen 178 --KDIGFH 183 (602)
T ss_pred --ceeeee
Confidence 277776
No 97
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=76.41 E-value=31 Score=33.30 Aligned_cols=52 Identities=29% Similarity=0.278 Sum_probs=35.8
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHh
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAV 162 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~L~~~~~~v 162 (404)
..++|+|+|+.... ....++++++.|++. ++.+.+||-|... +.|+.+++..
T Consensus 187 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~~----~~~~~~~~~~ 241 (367)
T cd05844 187 RPPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGPLL----AALEALARAL 241 (367)
T ss_pred CCcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCchHH----HHHHHHHHHc
Confidence 44578888876543 456677888888764 6788888765433 4677777665
No 98
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=75.89 E-value=7.9 Score=28.65 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=32.6
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
+|-++|......++-+.++.+.|.++||+|+.|+.|.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 5677888888888889999999999999999998876
No 99
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=75.43 E-value=46 Score=30.63 Aligned_cols=54 Identities=28% Similarity=0.309 Sum_probs=36.0
Q ss_pred CCeEEEEEEcCCCCC-ChhHHHHHHHHHHh--CCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKK--NSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~ak~LKk--nnI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
...++|+|+|+.... ....+.++++.+++ .++.+.++|-|... ..++.++...+
T Consensus 176 ~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~----~~~~~~~~~~~ 232 (348)
T cd03820 176 LKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPER----EALEALIKELG 232 (348)
T ss_pred CCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCH----HHHHHHHHHcC
Confidence 456678898876543 56678888888874 46777777766543 35666665553
No 100
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=75.37 E-value=53 Score=30.74 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=34.3
Q ss_pred CCeEEEEEEcCCCCC-ChhHHHHHHHHHHhC-CceEEEEEeCCCCCCcHHHHHHHHH
Q 015559 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN-SVALDIVNFGEDDEGNTEKLEALLA 160 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn-nI~VdiI~fG~e~~~n~~~L~~~~~ 160 (404)
....+|+|+|..... ....+.++++++++. ++.+.++|-|... ..++.++.
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~----~~~~~~~~ 270 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGPEK----EELKELAK 270 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcccH----HHHHHHHH
Confidence 445678888866543 567788888888887 7888777766543 34555543
No 101
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=73.45 E-value=90 Score=33.34 Aligned_cols=108 Identities=15% Similarity=0.081 Sum_probs=63.2
Q ss_pred ceEEEE-EeCChhhhCCCCCCCHHHHHHHHHHHH---HHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc
Q 015559 4 EATLIC-IDNSEWMRNGDYAPSRFQAQTEAANLI---CGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL 79 (404)
Q Consensus 4 Ea~vIv-IDnSesMrngD~~PtRl~Aq~dAv~~f---v~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l 79 (404)
.||||| .|+|.||... .++.++.| +..|+..+.+ +|=|+-++-..--.-|+ - -.+. ..
T Consensus 246 ~AVv~~lmDvSGSM~~~---------~K~lak~ff~~l~~fL~~~Y~-~Ve~vfI~H~t~A~EVd----E---e~FF-~~ 307 (421)
T PF04285_consen 246 NAVVFCLMDVSGSMGEF---------KKDLAKRFFFWLYLFLRRKYE-NVEIVFIRHHTEAKEVD----E---EEFF-HS 307 (421)
T ss_pred cEEEEEEEeCCCCCchH---------HHHHHHHHHHHHHHHHHhccC-ceEEEEEeecCceEEec----H---HHhc-cc
Confidence 467776 5999999742 22222222 2344555666 37777666542111111 1 1222 23
Q ss_pred cccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCC---CChhHHHHHHH
Q 015559 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK---HEKKVLEMIGR 130 (404)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~---~d~~~l~~~ak 130 (404)
.-+|+|-+..|+++|...+..|-++ ..=-|=+|-.|+.. .|.....++++
T Consensus 308 ~esGGT~vSSA~~l~~~ii~erypp-~~wNiY~~~~SDGDN~~~D~~~~~~ll~ 360 (421)
T PF04285_consen 308 RESGGTRVSSAYELALEIIEERYPP-SDWNIYVFHASDGDNWSSDNERCVELLE 360 (421)
T ss_pred CCCCCeEehHHHHHHHHHHHhhCCh-hhceeeeEEcccCccccCCCHHHHHHHH
Confidence 4579999999999999999987433 33356777777764 35555555544
No 102
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=72.21 E-value=55 Score=31.17 Aligned_cols=53 Identities=25% Similarity=0.233 Sum_probs=36.1
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
..++|+|+|+.... ....++++++++++. ++.+.++|-|... +.+++++...+
T Consensus 187 ~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~----~~~~~~~~~~~ 242 (360)
T cd04951 187 DTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLR----ATLERLIKALG 242 (360)
T ss_pred CCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcH----HHHHHHHHhcC
Confidence 45688888876543 456778888888765 6777777766543 46777776654
No 103
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=70.69 E-value=36 Score=32.77 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 89 AGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 89 ~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
.|..+|+..++.-+... ..|++|| +++.+ +-+|=+-+|+.|+..+..|.|+-.|...
T Consensus 32 AG~aVa~~i~~~~~~~~-~~~v~vl-cG~Gn-NGGDG~VaAR~L~~~G~~V~v~~~~~~~ 88 (203)
T COG0062 32 AGLAVARAILREYPLGR-ARRVLVL-CGPGN-NGGDGLVAARHLKAAGYAVTVLLLGDPK 88 (203)
T ss_pred HHHHHHHHHHHHcCccc-CCEEEEE-ECCCC-ccHHHHHHHHHHHhCCCceEEEEeCCCC
Confidence 45666777776643321 4455555 44543 4678899999999999999999999766
No 104
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.30 E-value=15 Score=27.05 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=32.2
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
+|-++|......++-+.++.+.|.+.+|+|+.|+.+.
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 5667788888888888999999999999999998765
No 105
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=68.24 E-value=63 Score=30.70 Aligned_cols=51 Identities=31% Similarity=0.333 Sum_probs=33.8
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
...+|+|+|.-... +...+.+++++++ ++.+.++|=|... ..++.+++..+
T Consensus 190 ~~~~i~~~G~~~~~K~~~~li~a~~~l~--~~~l~i~G~g~~~----~~~~~~~~~~~ 241 (357)
T cd03795 190 GRPFFLFVGRLVYYKGLDVLLEAAAALP--DAPLVIVGEGPLE----AELEALAAALG 241 (357)
T ss_pred CCcEEEEecccccccCHHHHHHHHHhcc--CcEEEEEeCChhH----HHHHHHHHhcC
Confidence 44678888875433 5556677777776 6888888877543 35666665544
No 106
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=68.18 E-value=62 Score=34.34 Aligned_cols=114 Identities=15% Similarity=0.174 Sum_probs=65.0
Q ss_pred ceEEEEE-eCChhhhCCCCCCCHHHHHHHHHHHHH---HHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc
Q 015559 4 EATLICI-DNSEWMRNGDYAPSRFQAQTEAANLIC---GAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL 79 (404)
Q Consensus 4 Ea~vIvI-DnSesMrngD~~PtRl~Aq~dAv~~fv---~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l 79 (404)
-|+|+|| |+|.||.. +-++.++.|+ .-|+.-..+ +|=||-++-..--.-|+=| .+.+ .
T Consensus 246 ~AVmfclMDvSGSM~~---------~~KdlAkrFF~lL~~FL~~kYe-nveivfIrHht~A~EVdE~-------dFF~-~ 307 (423)
T COG2718 246 NAVMFCLMDVSGSMDQ---------SEKDLAKRFFFLLYLFLRRKYE-NVEIVFIRHHTEAKEVDET-------DFFY-S 307 (423)
T ss_pred ceEEEEEEecCCCcch---------HHHHHHHHHHHHHHHHHhcccc-eeEEEEEeecCcceecchh-------hcee-e
Confidence 3677775 99999973 3444444433 122323333 5777777654211111111 1112 2
Q ss_pred cccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCC---C-ChhHHHHHH-HHHHhCC
Q 015559 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK---H-EKKVLEMIG-RKLKKNS 136 (404)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~---~-d~~~l~~~a-k~LKknn 136 (404)
+-+|+|-+.+||++++..++.|-+ .+.=-|-.|-.|+.. . ++..+.-+. +.+..-+
T Consensus 308 ~esGGTivSSAl~~m~evi~ErYp-~aeWNIY~fqaSDGDN~~dDserc~~ll~~~im~~~~ 368 (423)
T COG2718 308 QESGGTIVSSALKLMLEVIKERYP-PAEWNIYAFQASDGDNWADDSERCVELLAKKLMPVVQ 368 (423)
T ss_pred cCCCCeEeHHHHHHHHHHHHhhCC-hhheeeeeeeecCCccccCCCHHHHHHHHHHHHHhhh
Confidence 346889999999999999999844 344457777777764 2 455555555 3344433
No 107
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=67.51 E-value=14 Score=34.33 Aligned_cols=58 Identities=12% Similarity=0.239 Sum_probs=46.3
Q ss_pred cccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
...|+.+...|+.+..++.+. +-.+||+|+| .++..-+++.++..|.+|.+|+++...
T Consensus 89 ~~k~~vDv~la~D~~~l~~~~-----~~D~ivl~Sg------D~DF~p~v~~~~~~G~rv~v~~~~~~~ 146 (181)
T COG1432 89 ITKGDVDVELAVDAMELADKK-----NVDTIVLFSG------DGDFIPLVEAARDKGKRVEVAGIEPMT 146 (181)
T ss_pred ccccCcchhhHHHHHHhhccc-----CCCEEEEEcC------CccHHHHHHHHHHcCCEEEEEecCCcC
Confidence 345888988898888888754 4558888866 346677799999999999999999944
No 108
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.43 E-value=16 Score=27.25 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
+|-.+|+.....++-+.++.+.|.+.+|+|+.|+.|.
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 5677788888888999999999999999999998776
No 109
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=67.10 E-value=54 Score=30.96 Aligned_cols=42 Identities=17% Similarity=0.032 Sum_probs=30.7
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhCC--ceEEEEEeCCCC
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNS--VALDIVNFGEDD 148 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKknn--I~VdiI~fG~e~ 148 (404)
...+|+|+|+.... +...+.++++.+++.+ +.+.++|-+...
T Consensus 194 ~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~ 238 (365)
T cd03809 194 PRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWL 238 (365)
T ss_pred CCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 45678888876543 5678889999999886 777777765544
No 110
>PF12257 DUF3608: Protein of unknown function (DUF3608); InterPro: IPR022046 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF00610 from PFAM.
Probab=66.72 E-value=17 Score=36.64 Aligned_cols=141 Identities=18% Similarity=0.213 Sum_probs=83.7
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhc----cCCcCCeEEEEEecCCc---------------------cE
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKT----QLNPENTVGVMTMAGKG---------------------VR 60 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~----~~NPesqVGLVtmag~~---------------------a~ 60 (404)
++|.|-+|.=|.+=| ++=-.-=.++|+.|+.++| +.+-.-.|-||.|+.-- ..
T Consensus 73 ~~~~IQmS~EMW~fd--~~Ge~~fek~vn~Fl~~lf~kWk~~~~~H~vTIVlfsRv~~~~~~~~~l~~~~~~~~y~DfYr 150 (281)
T PF12257_consen 73 VYIFIQMSSEMWDFD--EDGEIYFEKAVNGFLPELFKKWKEIGTHHLVTIVLFSRVDYDDISFRDLPPGERGKNYKDFYR 150 (281)
T ss_pred eeehHhhhHHHhCcC--ccHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEEccccchhhcCCccccCCCCCcceE
Confidence 456677777776533 3422222345555554444 55666677887776210 12
Q ss_pred EEECC--CCCHHHHHHHhcC--------c------------c------ccCCCcHHHHHHHHHHHhhh----cCCCCCCe
Q 015559 61 VLVTP--TSDLGKILACMHG--------L------------E------IGGELNLAAGIQVAQLALKH----RQNKKQQQ 108 (404)
Q Consensus 61 VLvtl--T~D~~kils~L~~--------l------------~------~~G~~sL~~gL~iA~lALKh----r~~k~~~~ 108 (404)
|++.- ..+-..++..|+. + . +.-.-++..||-+|...+.+ |.-.+..+
T Consensus 151 VVv~~~~~~~W~~il~~Lk~eF~~f~rdi~~~~~~~~~~~~~i~g~~s~A~~gNiLEaINlaln~~~~~~idRdl~rTG~ 230 (281)
T PF12257_consen 151 VVVDEENSQDWTSILVTLKKEFNQFQRDILLYHQSDEDGTTRIKGRFSPAIKGNILEAINLALNQFDKHYIDRDLRRTGQ 230 (281)
T ss_pred EEEeccccccHHHHHHHHHHHHHHHHHHhhcccccccCCCccccceEeecccccHHHHHHHHhhhcccccccCcccccCc
Confidence 33321 2354566555531 1 1 12256777888888766642 22244667
Q ss_pred EEEEEEcCCC--CCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 109 RIIVFVGSPI--KHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 109 RIVlFvgSp~--~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
-|||++-|+. ..|..-+.-+-++|-.++|.||+|++|..-
T Consensus 231 ~iivITpG~Gvf~Vd~~ll~~T~~rl~~~gi~~DlIcL~~~P 272 (281)
T PF12257_consen 231 SIIVITPGTGVFEVDYDLLRLTTQRLLDNGIGIDLICLSKPP 272 (281)
T ss_pred eEEEEcCCCceEEECHHHHHHHHHHHHhcCccEEEEEcCCCC
Confidence 7777765554 347777778899999999999999999743
No 111
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=66.12 E-value=25 Score=33.42 Aligned_cols=77 Identities=23% Similarity=0.267 Sum_probs=46.2
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCC-Cchhhh
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG-PNALSD 182 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g-~~lLsD 182 (404)
....|+|+|..... +...+.++++++++. ++.+.++|-|... ..++.++...+-.++ +..+..- ..-+..
T Consensus 178 ~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~----~~~~~~~~~~~~~~~--v~~~g~~~~~~l~~ 251 (355)
T cd03799 178 EPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLR----DELEALIAELGLEDR--VTLLGAKSQEEVRE 251 (355)
T ss_pred CCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccH----HHHHHHHHHcCCCCe--EEECCcCChHHHHH
Confidence 44567888876433 567788999999886 6777777766543 467777777643333 2222221 123555
Q ss_pred hhhcCcc
Q 015559 183 VLLSTPI 189 (404)
Q Consensus 183 ~l~sspi 189 (404)
.+..+.|
T Consensus 252 ~~~~adi 258 (355)
T cd03799 252 LLRAADL 258 (355)
T ss_pred HHHhCCE
Confidence 5555544
No 112
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=66.05 E-value=1.1e+02 Score=28.59 Aligned_cols=43 Identities=21% Similarity=0.225 Sum_probs=31.8
Q ss_pred CCeEEEEEEcCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
....+|+|+|+.... ....+.++++++++.++.+.++|-|...
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~ 232 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLEL 232 (359)
T ss_pred CCceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhh
Confidence 345567888876543 5667788888888878888888877654
No 113
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=64.94 E-value=14 Score=38.66 Aligned_cols=59 Identities=10% Similarity=0.185 Sum_probs=40.6
Q ss_pred CCeEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhcC
Q 015559 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVNN 164 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~L~~~~~~vn~ 164 (404)
....+|+|+|..... +-..++++++.+++. ++.+.|||-|.+...-.+.|+.+++..+-
T Consensus 291 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l 352 (475)
T cd03813 291 KEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGL 352 (475)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCC
Confidence 445689999987653 667788888888775 67777777775331234567888877653
No 114
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=64.76 E-value=1.4e+02 Score=28.86 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=44.7
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhC-CceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCCchhhhhh
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN-SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 184 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn-nI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~~lLsD~l 184 (404)
..++|+|+|..... ....+.++.+.+++. ++.+.++|-|.. .+.++.++...+-.++ +..+..-++ +.+.+
T Consensus 196 ~~~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~~----~~~~~~~~~~~~~~~~--v~~~g~~~~-~~~~~ 268 (371)
T cd04962 196 GEKVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGPE----RSPAERLARELGLQDD--VLFLGKQDH-VEELL 268 (371)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCcC----HHHHHHHHHHcCCCce--EEEecCccc-HHHHH
Confidence 45678888866543 566777888877764 566666665532 3567777776643333 333333332 55555
Q ss_pred hcCcc
Q 015559 185 LSTPI 189 (404)
Q Consensus 185 ~sspi 189 (404)
..+.+
T Consensus 269 ~~~d~ 273 (371)
T cd04962 269 SIADL 273 (371)
T ss_pred HhcCE
Confidence 55544
No 115
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.59 E-value=19 Score=26.51 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=32.2
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
+|-++|......++-+.++...|++.+|.|+.|+.|.
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4667788887888889999999999999999999875
No 116
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=63.40 E-value=13 Score=38.10 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=38.1
Q ss_pred EEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhcC
Q 015559 109 RIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVNN 164 (404)
Q Consensus 109 RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~L~~~~~~vn~ 164 (404)
..|+|+|..... ....+.++++.|++. ++.+.|||-|... +.|+++++..+-
T Consensus 223 ~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~----~~l~~~~~~~~l 277 (406)
T PRK15427 223 LEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWE----RRLRTLIEQYQL 277 (406)
T ss_pred eEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhH----HHHHHHHHHcCC
Confidence 458888877643 566788888888875 5788888877644 478888877653
No 117
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=63.18 E-value=16 Score=31.73 Aligned_cols=57 Identities=16% Similarity=0.404 Sum_probs=39.6
Q ss_pred eEEEEEEcCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCCC-----------CcHHHHHHHHHHhcC
Q 015559 108 QRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDDE-----------GNTEKLEALLAAVNN 164 (404)
Q Consensus 108 ~RIVlFvgSp~~~--d~~~l~~~ak~LKknnI~VdiI~fG~e~~-----------~n~~~L~~~~~~vn~ 164 (404)
+||++|+||+... +..-+..+++.+++.++.+.+|.+.+... ...+.++++.+++..
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~ 70 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKE 70 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHH
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceec
Confidence 5899999999643 44555677888888899999999987410 122455666666654
No 118
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=63.09 E-value=40 Score=30.98 Aligned_cols=61 Identities=11% Similarity=0.281 Sum_probs=42.4
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV 173 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v 173 (404)
+|+|+.||. .|-....++.+.|++.||.+++--.+.. .+.+.+.+|++..+..+-.-||.+
T Consensus 2 ~V~Ii~gs~--SD~~~~~~a~~~L~~~gi~~~~~V~saH--R~p~~l~~~~~~~~~~~~~viIa~ 62 (150)
T PF00731_consen 2 KVAIIMGST--SDLPIAEEAAKTLEEFGIPYEVRVASAH--RTPERLLEFVKEYEARGADVIIAV 62 (150)
T ss_dssp EEEEEESSG--GGHHHHHHHHHHHHHTT-EEEEEE--TT--TSHHHHHHHHHHTTTTTESEEEEE
T ss_pred eEEEEeCCH--HHHHHHHHHHHHHHHcCCCEEEEEEecc--CCHHHHHHHHHHhccCCCEEEEEE
Confidence 577787865 3778889999999999999987555553 477889999988865332334433
No 119
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=62.88 E-value=36 Score=29.45 Aligned_cols=133 Identities=26% Similarity=0.346 Sum_probs=72.9
Q ss_pred CCCCeEEEEEEcCCCCC-ChhHHHHHHHHHH---hCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCCch
Q 015559 104 KKQQQRIIVFVGSPIKH-EKKVLEMIGRKLK---KNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNA 179 (404)
Q Consensus 104 k~~~~RIVlFvgSp~~~-d~~~l~~~ak~LK---knnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~~l 179 (404)
......+|+|+|..... ....++++++.++ ..++.+-|+|.| .....++.+++..+..++-+++.-.+ ..-
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 85 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG----EYKKELKNLIEKLNLKENIIFLGYVP-DDE 85 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC----CHHHHHHHHHHHTTCGTTEEEEESHS-HHH
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc----cccccccccccccccccccccccccc-ccc
Confidence 33556778888877654 6778888888886 567777777733 33457888887776555555554443 223
Q ss_pred hhhhhhcCccccCCC--CCCCc--hhHhHHHhh-------------hcCCCCCccCCCCCCCHHHHHHHHhcHHHHHHHH
Q 015559 180 LSDVLLSTPIFTGDG--EGGSG--FAAAAAAAA-------------ASGASGYEFGVDPNLDPELALALRVSMEEERARQ 242 (404)
Q Consensus 180 LsD~l~sspi~~g~~--~~~~~--~~~~~~~~~-------------~~~~~~~efgvDp~~DPELa~ALr~SlEEe~~rq 242 (404)
|.+.+-.+.|+.--. ++.+. ..+...|.+ ..+..|+ =+++..--+|+-+|+.-+.....|+
T Consensus 86 l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~--~~~~~~~~~l~~~i~~~l~~~~~~~ 163 (172)
T PF00534_consen 86 LDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGF--LFDPNDIEELADAIEKLLNDPELRQ 163 (172)
T ss_dssp HHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEE--EESTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeccccccccccccccccccccccceeeccccCCceeeccccceE--EeCCCCHHHHHHHHHHHHCCHHHHH
Confidence 556665555532110 00110 001110100 0011111 1467766789999998887775554
Q ss_pred H
Q 015559 243 E 243 (404)
Q Consensus 243 ~ 243 (404)
.
T Consensus 164 ~ 164 (172)
T PF00534_consen 164 K 164 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 120
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=61.97 E-value=75 Score=33.42 Aligned_cols=138 Identities=17% Similarity=0.105 Sum_probs=77.4
Q ss_pred ceEEEE-EeCChhhhCCCCCCCHHHHHHHHHHHHH---HHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc
Q 015559 4 EATLIC-IDNSEWMRNGDYAPSRFQAQTEAANLIC---GAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL 79 (404)
Q Consensus 4 Ea~vIv-IDnSesMrngD~~PtRl~Aq~dAv~~fv---~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l 79 (404)
.|+||| +|+|.||.. ..++.++.|+ -.|+..+. .+|=|+-++-...-.-|+ - -.+.+ .
T Consensus 202 ~AV~fc~MDvSGSM~~---------~~K~lak~ff~~ly~FL~~~Y-~~VeivFI~H~t~AkEVd----E---eeFF~-~ 263 (371)
T TIGR02877 202 NAVVIAMMDTSGSMGQ---------FKKYIARSFFFWMVKFLRTKY-ENVEICFISHHTEAKEVT----E---EEFFH-K 263 (371)
T ss_pred cEEEEEEEeCCCCCCH---------HHHHHHHHHHHHHHHHHHhcc-CceEEEEEeecCeeEEcC----H---HHhcc-c
Confidence 467776 599999953 3444444332 22334444 367777777553111111 1 12222 2
Q ss_pred cccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC---ChhHHHHHHHHHHhCCceEEEEEeCCCCC--CcHHH
Q 015559 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH---EKKVLEMIGRKLKKNSVALDIVNFGEDDE--GNTEK 154 (404)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~---d~~~l~~~ak~LKknnI~VdiI~fG~e~~--~n~~~ 154 (404)
.-.|+|-+..|+++|+..++.|-+ ...=-|=+|=.|+... |.....++.++|-. .|..+++|+-.. ....+
T Consensus 264 ~EsGGT~vSSA~~l~~eII~~rYp-p~~wNIY~f~aSDGDNw~~D~~~c~~ll~~llp---~~~~f~Y~Ei~~~~~~~~l 339 (371)
T TIGR02877 264 GESGGTYCSSGYKKALEIIDERYN-PARYNIYAFHFSDGDNLTSDNERAVKLVRKLLE---VCNLFGYGEIMPYGYSNTL 339 (371)
T ss_pred CCCCCeEehHHHHHHHHHHHhhCC-hhhCeeEEEEcccCCCccCCcHHHHHHHHHHHH---hhheEEEEEecCCCCcchH
Confidence 346899999999999999998743 3333477777777743 33333444333322 256677776442 12457
Q ss_pred HHHHHHHhc
Q 015559 155 LEALLAAVN 163 (404)
Q Consensus 155 L~~~~~~vn 163 (404)
+..|-..+.
T Consensus 340 ~~~y~~~i~ 348 (371)
T TIGR02877 340 KNKFKNEIK 348 (371)
T ss_pred HHHHHhhhc
Confidence 777643364
No 121
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=61.52 E-value=1.1e+02 Score=26.67 Aligned_cols=72 Identities=11% Similarity=0.123 Sum_probs=44.9
Q ss_pred HHHHHhcCccccC--CCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 71 KILACMHGLEIGG--ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 71 kils~L~~l~~~G--~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
.+...+.++.+.+ +-+...++.+....+.. +..+.-+||++|+--.....++.++++.+++ +.+|.+|+.-.
T Consensus 16 ~~~~~~p~~~i~a~~g~~~~~~~~~l~~~~~~---~~~~d~vvi~lGtNd~~~~~nl~~ii~~~~~-~~~ivlv~~~~ 89 (150)
T cd01840 16 ALQEIFPNIQIDAKVGRQMSEAPDLIRQLKDS---GKLRKTVVIGLGTNGPFTKDQLDELLDALGP-DRQVYLVNPHV 89 (150)
T ss_pred HHHHHCCCCEEEeeecccHHHHHHHHHHHHHc---CCCCCeEEEEecCCCCCCHHHHHHHHHHcCC-CCEEEEEECCC
Confidence 3444455554433 23445666665544431 2345667778887766688999999999964 67777776653
No 122
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=60.30 E-value=69 Score=29.42 Aligned_cols=57 Identities=35% Similarity=0.422 Sum_probs=35.5
Q ss_pred CCeEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhcCCC
Q 015559 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVNNND 166 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d 166 (404)
.....|+|+|+.... .-..+.++++.+++. ++.+.++|-|. ....++.+++..+..+
T Consensus 197 ~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~----~~~~~~~~~~~~~~~~ 256 (374)
T cd03801 197 EDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGP----LREELEALAAELGLGD 256 (374)
T ss_pred CCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcH----HHHHHHHHHHHhCCCc
Confidence 445678888876543 556778888888876 56666666322 2346666665554333
No 123
>PRK05325 hypothetical protein; Provisional
Probab=60.14 E-value=71 Score=33.87 Aligned_cols=138 Identities=14% Similarity=0.083 Sum_probs=77.5
Q ss_pred ceEEEE-EeCChhhhCCCCCCCHHHHHHHHHHHHH---HHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc
Q 015559 4 EATLIC-IDNSEWMRNGDYAPSRFQAQTEAANLIC---GAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL 79 (404)
Q Consensus 4 Ea~vIv-IDnSesMrngD~~PtRl~Aq~dAv~~fv---~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l 79 (404)
.|+||| .|+|.||.. ..++.+..|+ -.|+.-+. .+|=||-++-..--.-|+ - -.+.+ .
T Consensus 222 ~AVmfclMDvSGSM~~---------~~K~lakrff~lly~fL~r~Y-~~vEvvFI~H~t~AkEVd----E---eeFF~-~ 283 (401)
T PRK05325 222 QAVMFCLMDVSGSMDE---------AEKDLAKRFFFLLYLFLRRKY-ENVEVVFIRHHTEAKEVD----E---EEFFY-S 283 (401)
T ss_pred cEEEEEEEeCCCCCch---------HHHHHHHHHHHHHHHHHHhcc-CceEEEEEeecCceeEcC----H---HHccc-c
Confidence 477777 599999974 2333333322 22333444 467777777543111111 1 11222 3
Q ss_pred cccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC---ChhHHHHHHH-HHHhCCceEEEEEeCCCCCC---cH
Q 015559 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH---EKKVLEMIGR-KLKKNSVALDIVNFGEDDEG---NT 152 (404)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~---d~~~l~~~ak-~LKknnI~VdiI~fG~e~~~---n~ 152 (404)
.-.|+|-+..|+++|+..+..|-+ ...=-|=+|=+|+... |.....++.+ +|-. .|...++++-... +.
T Consensus 284 ~esGGT~vSSA~~l~~eIi~~rYp-p~~wNIY~f~aSDGDNw~~D~~~~~~ll~~~llp---~~~~f~Y~Ev~~~~~~~~ 359 (401)
T PRK05325 284 RESGGTIVSSAYKLALEIIEERYP-PAEWNIYAFQASDGDNWSSDNPRCVELLREELLP---VCNYFAYIEVTPRAYRHQ 359 (401)
T ss_pred CCCCCeEehHHHHHHHHHHHhhCC-HhHCeeEEEEcccCCCcCCCCHHHHHHHHHHHHH---HhhheEEEEecCCCCCch
Confidence 447999999999999999998743 3333477777777753 4444444443 3211 2556666664421 35
Q ss_pred HHHHHHHHHhcC
Q 015559 153 EKLEALLAAVNN 164 (404)
Q Consensus 153 ~~L~~~~~~vn~ 164 (404)
.++..+- .+..
T Consensus 360 ~l~~~y~-~i~~ 370 (401)
T PRK05325 360 TLWREYE-RLQD 370 (401)
T ss_pred HHHHHHH-Hhhc
Confidence 5666664 6654
No 124
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=59.90 E-value=49 Score=30.92 Aligned_cols=56 Identities=25% Similarity=0.262 Sum_probs=36.2
Q ss_pred CCeEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
..+.+|+|+|..... ....+.+++++|++. ++.+.+||-|... ....++.+++..+
T Consensus 201 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~--~~~~~~~~~~~~~ 259 (375)
T cd03821 201 PDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGG--YRAELKQIAAALG 259 (375)
T ss_pred CCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcc--hHHHHHHHHHhcC
Confidence 445678888876543 566778888898884 6777777765543 2345566544443
No 125
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=59.35 E-value=1.5e+02 Score=27.62 Aligned_cols=58 Identities=28% Similarity=0.358 Sum_probs=36.2
Q ss_pred CCeEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhcCCCC
Q 015559 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVNNNDS 167 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~ 167 (404)
....+|+|+|..... ....+.++++++++. ++.+.++|-|.. .+.++.+++..+..++
T Consensus 200 ~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~----~~~~~~~~~~~~~~~~ 260 (374)
T cd03817 200 EDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPE----REELEELARELGLADR 260 (374)
T ss_pred CCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCch----HHHHHHHHHHcCCCCc
Confidence 344677888865433 567788888888874 566666664432 2467777665543333
No 126
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=59.10 E-value=1e+02 Score=33.81 Aligned_cols=65 Identities=9% Similarity=0.136 Sum_probs=47.2
Q ss_pred CCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 015559 105 KQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV 173 (404)
Q Consensus 105 ~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v 173 (404)
+...++.|++||. .|-..+.++++.|++.||..++--.|. . -+.+.+..|+......+-.-||.+
T Consensus 408 ~~~~~v~i~~gs~--sd~~~~~~~~~~l~~~g~~~~~~v~sa-h-r~~~~~~~~~~~~~~~~~~v~i~~ 472 (577)
T PLN02948 408 KGTPLVGIIMGSD--SDLPTMKDAAEILDSFGVPYEVTIVSA-H-RTPERMFSYARSAHSRGLQVIIAG 472 (577)
T ss_pred CCCCeEEEEECch--hhHHHHHHHHHHHHHcCCCeEEEEECC-c-cCHHHHHHHHHHHHHCCCCEEEEE
Confidence 3455688888876 477889999999999999988555554 3 578899999887764443444444
No 127
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=57.71 E-value=92 Score=28.99 Aligned_cols=73 Identities=10% Similarity=0.112 Sum_probs=42.3
Q ss_pred ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015559 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (404)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~ 160 (404)
..|.+++.-+|..-.++... +--.+||+ .|+ ++..-++.+|+..|++|.+||+..-. =..|.+
T Consensus 85 ~kG~~Dv~laIDame~~~~~-----~iD~~vLv-SgD-----~DF~~Lv~~lre~G~~V~v~g~~~~t------s~~L~~ 147 (160)
T TIGR00288 85 VAGDVDVRMAVEAMELIYNP-----NIDAVALV-TRD-----ADFLPVINKAKENGKETIVIGAEPGF------STALQN 147 (160)
T ss_pred ecCcccHHHHHHHHHHhccC-----CCCEEEEE-ecc-----HhHHHHHHHHHHCCCEEEEEeCCCCC------hHHHHH
Confidence 35766666555553333221 22244444 444 57788999999999988877753322 244554
Q ss_pred HhcCCCCcEEEEeCC
Q 015559 161 AVNNNDSSHLVHVPP 175 (404)
Q Consensus 161 ~vn~~d~Shlv~vp~ 175 (404)
+. ++|+.+.+
T Consensus 148 ac-----d~FI~L~~ 157 (160)
T TIGR00288 148 SA-----DIAIILGE 157 (160)
T ss_pred hc-----CeEEeCCC
Confidence 44 36766654
No 128
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=57.33 E-value=32 Score=23.82 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=29.5
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 111 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 111 VlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
|-++|.+....++-+.++.+.|.+++|+|+.|+-+.
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 455677766677888899999999999999998764
No 129
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=56.85 E-value=42 Score=35.45 Aligned_cols=63 Identities=25% Similarity=0.381 Sum_probs=47.9
Q ss_pred CCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 015559 103 NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 103 ~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~ 175 (404)
++..++|+||||=+++.-.|. +.-=|..|.+.|-.|++|||++..- ++++. | ..+.|++.+|+
T Consensus 8 ~~~~k~ra~vvVLGDvGRSPR-MqYHA~Sla~~gf~VdliGy~~s~p-----~e~l~---~-hprI~ih~m~~ 70 (444)
T KOG2941|consen 8 NKSKKKRAIVVVLGDVGRSPR-MQYHALSLAKLGFQVDLIGYVESIP-----LEELL---N-HPRIRIHGMPN 70 (444)
T ss_pred cccccceEEEEEecccCCChH-HHHHHHHHHHcCCeEEEEEecCCCC-----hHHHh---c-CCceEEEeCCC
Confidence 456788999999888876665 4445667788899999999999872 45555 3 56788888876
No 130
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=56.63 E-value=1.7e+02 Score=27.38 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=29.0
Q ss_pred eEEEEEEcCCCCC-ChhHHHHHHHHHHhC-CceEEEEEeCCCC
Q 015559 108 QRIIVFVGSPIKH-EKKVLEMIGRKLKKN-SVALDIVNFGEDD 148 (404)
Q Consensus 108 ~RIVlFvgSp~~~-d~~~l~~~ak~LKkn-nI~VdiI~fG~e~ 148 (404)
..+|+|+|..... ....+.++++++++. ++.+.++|-|...
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~ 239 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPAR 239 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCchH
Confidence 4678888875432 556788888888774 7888888866543
No 131
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=56.06 E-value=28 Score=30.22 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=40.6
Q ss_pred CCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 015559 84 ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 159 (404)
Q Consensus 84 ~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~ 159 (404)
..++.-++.+..++..+ ....|||++| + .+..-++++|++.|++|-++++.... ...|+..+
T Consensus 82 ~~D~~l~~d~~~~~~~~-----~~d~ivLvSg-D-----~Df~~~i~~lr~~G~~V~v~~~~~~~---s~~L~~~~ 143 (149)
T cd06167 82 GVDVALAIDALELAYKR-----RIDTIVLVSG-D-----SDFVPLVERLRELGKRVIVVGFEAKT---SRELRKAA 143 (149)
T ss_pred CccHHHHHHHHHHhhhc-----CCCEEEEEEC-C-----ccHHHHHHHHHHcCCEEEEEccCccC---hHHHHHhC
Confidence 46665555555555443 3346666654 3 47899999999999999999998333 23455444
No 132
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.90 E-value=34 Score=26.08 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=32.5
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
+|-.||. ....++-+.++...|.++||+|..|+.|+..
T Consensus 3 ~VsvVG~-~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~ 40 (65)
T cd04918 3 IISLIGN-VQRSSLILERAFHVLYTKGVNVQMISQGASK 40 (65)
T ss_pred EEEEECC-CCCCccHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 6788898 6666777789999999999999999998875
No 133
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=55.01 E-value=21 Score=30.46 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 015559 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 144 (404)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~f 144 (404)
.+..-++.+...++.+. . ..+||++| + +++.-++++|+..|++|.+|++
T Consensus 79 ~D~~l~~d~~~~~~~~~----~-d~ivLvSg-D-----~Df~~~v~~l~~~g~~V~v~~~ 127 (146)
T PF01936_consen 79 VDVALAVDILELAYENP----P-DTIVLVSG-D-----SDFAPLVRKLRERGKRVIVVGA 127 (146)
T ss_dssp -HHHHHHHHHHHG--GG------SEEEEE---------GGGHHHHHHHHHH--EEEEEE-
T ss_pred cHHHHHHHHHHHhhccC----C-CEEEEEEC-c-----HHHHHHHHHHHHcCCEEEEEEe
Confidence 44444444444554442 2 56665544 3 6789999999999999999996
No 134
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=55.00 E-value=1.7e+02 Score=28.75 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=43.4
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhC------CceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCCch
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN------SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNA 179 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn------nI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~~l 179 (404)
...+|+++|..... +...+.++++.+.+. ++.+-+||=|... +.++++++..+- .+.+.++....-
T Consensus 193 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~----~~~~~~~~~~~~---~~~v~~~g~~~~ 265 (374)
T TIGR03088 193 ESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPAR----GACEQMVRAAGL---AHLVWLPGERDD 265 (374)
T ss_pred CCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchH----HHHHHHHHHcCC---cceEEEcCCcCC
Confidence 34578888876543 566777777777554 5666666655432 467777766543 223333221122
Q ss_pred hhhhhhcCccc
Q 015559 180 LSDVLLSTPIF 190 (404)
Q Consensus 180 LsD~l~sspi~ 190 (404)
+.+.+..+.|+
T Consensus 266 ~~~~~~~adi~ 276 (374)
T TIGR03088 266 VPALMQALDLF 276 (374)
T ss_pred HHHHHHhcCEE
Confidence 45555555553
No 135
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=54.18 E-value=46 Score=31.46 Aligned_cols=52 Identities=23% Similarity=0.253 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 90 GIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 90 gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
|..+|...+++.+ ..+||+||.|+- .+.++=+.+|+.|+..+|.|.+++...
T Consensus 31 g~~va~~i~~~~~---~~~~v~vl~G~G--NNGGDGlv~AR~L~~~~v~V~~~~~~~ 82 (205)
T TIGR00197 31 GKAVAQAVLQAFP---LAGHVIIFCGPG--NNGGDGFVVARHLKGFGVEVFLLKKEK 82 (205)
T ss_pred HHHHHHHHHHHcC---CCCeEEEEECCC--CCccHHHHHHHHHHhCCCEEEEEccCC
Confidence 4445555555432 245777776543 246778899999998999988887655
No 136
>PF01882 DUF58: Protein of unknown function DUF58; InterPro: IPR002881 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain (see IPR002035 from INTERPRO).
Probab=54.17 E-value=25 Score=27.86 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=34.9
Q ss_pred ceEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccC
Q 015559 4 EATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQL 43 (404)
Q Consensus 4 Ea~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~ 43 (404)
..++|++|.+.+|.-+.-.+..++....++..++....++
T Consensus 41 ~~~~i~ld~~~~~~~~~~~~~~~e~~l~~a~~l~~~~~~~ 80 (86)
T PF01882_consen 41 QPVWIVLDLSPSMYFGSNGRSKFERALSAAASLANQALRQ 80 (86)
T ss_pred CcEEEEEECCCccccCcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3578999999999999888999999999999888887655
No 137
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=52.82 E-value=1.9e+02 Score=26.76 Aligned_cols=49 Identities=24% Similarity=0.194 Sum_probs=31.1
Q ss_pred eEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHH
Q 015559 108 QRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLA 160 (404)
Q Consensus 108 ~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~L~~~~~ 160 (404)
..+|+|+|+.... ....+.++++.+++. ++.+.++|-|... ..++.+..
T Consensus 193 ~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~----~~~~~~~~ 244 (365)
T cd03807 193 TFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDR----ANLELLAL 244 (365)
T ss_pred CeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcch----hHHHHHHH
Confidence 4567888876543 566778888888774 5666666655544 24444544
No 138
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=51.69 E-value=21 Score=30.85 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=25.0
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (404)
+||++.+++.+.. . ....++++|++.++.|++|-
T Consensus 1 k~i~l~vtGs~~~-~-~~~~~l~~L~~~g~~v~vv~ 34 (129)
T PF02441_consen 1 KRILLGVTGSIAA-Y-KAPDLLRRLKRAGWEVRVVL 34 (129)
T ss_dssp -EEEEEE-SSGGG-G-GHHHHHHHHHTTTSEEEEEE
T ss_pred CEEEEEEECHHHH-H-HHHHHHHHHhhCCCEEEEEE
Confidence 5788888776543 2 28899999999999988764
No 139
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=51.51 E-value=52 Score=32.28 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=27.1
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (404)
.||+||.|+-. +.+|=+.+|+.|...++.|.|+-
T Consensus 61 ~~V~VlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGN--NGGDGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECCCC--CchhHHHHHHHHHHCCCeEEEEE
Confidence 57777766443 46788999999999999999887
No 140
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=50.36 E-value=95 Score=26.80 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=37.2
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 015559 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV 173 (404)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v 173 (404)
.||++| +......-.....|.+++-||.+.++-|.+.. . .+-+...++.+|.+.+-|=+.|
T Consensus 33 aii~vg-~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~-~-~~el~~~i~~lN~D~~V~GIlv 93 (117)
T PF00763_consen 33 AIILVG-DDPASISYVRSKQKAAEKLGIEFELIELPEDI-S-EEELLELIEKLNEDPSVHGILV 93 (117)
T ss_dssp EEEEES---HHHHHHHHHHHHHHHHHT-EEEEEEE-TTS-S-HHHHHHHHHHHHH-TT-SEEEE
T ss_pred EEEecC-CChhHHHHHHHHHHHHHHcCCceEEEECCCCc-C-HHHHHHHHHHHhCCCCCCEEEE
Confidence 344444 32223334557789999999999999998776 3 4556666789987765554333
No 141
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=50.03 E-value=69 Score=29.68 Aligned_cols=53 Identities=34% Similarity=0.387 Sum_probs=34.5
Q ss_pred CCeEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHh
Q 015559 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAV 162 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~L~~~~~~v 162 (404)
...+.|+|+|+.... ....+.++++++++. ++.+.++|-|... ..++.+++..
T Consensus 200 ~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~----~~~~~~~~~~ 255 (377)
T cd03798 200 EDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLR----EALEALAAEL 255 (377)
T ss_pred CCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcch----HHHHHHHHhc
Confidence 355678888875543 566788888888876 5666666655433 3566666544
No 142
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=49.90 E-value=2.2e+02 Score=27.84 Aligned_cols=52 Identities=25% Similarity=0.365 Sum_probs=35.2
Q ss_pred eEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 108 QRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 108 ~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
...|+|+|..... ....++++.+++++. ++.+.++|.|... ..++.+++..+
T Consensus 204 ~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~----~~~~~~~~~~~ 258 (372)
T cd04949 204 PHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEE----EKLKELIEELG 258 (372)
T ss_pred CCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCchH----HHHHHHHHHcC
Confidence 3467888876443 555677777777654 6888999988755 35677765553
No 143
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=49.43 E-value=60 Score=30.43 Aligned_cols=55 Identities=15% Similarity=0.273 Sum_probs=39.2
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
++|+|||.....=--.+.|+|..++.++-+|-+|+.-.---.-.+-|+.+++.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhc
Confidence 6788888665443446789999999889999999986532234678888888884
No 144
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=49.14 E-value=50 Score=25.51 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=30.8
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
+|-++|.....+++-+.++.+.|.+.+|.++.|+.+.
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 3555677777778888999999999999999999874
No 145
>PRK10307 putative glycosyl transferase; Provisional
Probab=47.92 E-value=1.6e+02 Score=29.71 Aligned_cols=53 Identities=15% Similarity=0.292 Sum_probs=34.5
Q ss_pred eEEEEEEcCCCCC-ChhHHHHHHHHHHhC-CceEEEEEeCCCCCCcHHHHHHHHHHhcC
Q 015559 108 QRIIVFVGSPIKH-EKKVLEMIGRKLKKN-SVALDIVNFGEDDEGNTEKLEALLAAVNN 164 (404)
Q Consensus 108 ~RIVlFvgSp~~~-d~~~l~~~ak~LKkn-nI~VdiI~fG~e~~~n~~~L~~~~~~vn~ 164 (404)
..+|+|+|..... +-..++++++++++. ++.+.|||=|... +.|+++++..+.
T Consensus 229 ~~~i~~~G~l~~~kg~~~li~a~~~l~~~~~~~l~ivG~g~~~----~~l~~~~~~~~l 283 (412)
T PRK10307 229 KKIVLYSGNIGEKQGLELVIDAARRLRDRPDLIFVICGQGGGK----ARLEKMAQCRGL 283 (412)
T ss_pred CEEEEEcCccccccCHHHHHHHHHHhccCCCeEEEEECCChhH----HHHHHHHHHcCC
Confidence 4578888876543 567788888887654 4666666655433 467777765543
No 146
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.41 E-value=50 Score=23.77 Aligned_cols=34 Identities=12% Similarity=0.337 Sum_probs=27.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 015559 111 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 144 (404)
Q Consensus 111 VlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~f 144 (404)
|-++|..+...++-+.++.+.|.+.+|+|+.|+.
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc
Confidence 4566766666778888999999999999999973
No 147
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=47.18 E-value=43 Score=32.45 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=45.5
Q ss_pred CCCCCeEEEEEEcCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCCCCc-----HHHHHHHHHHhcCCCCcEEEEeCC
Q 015559 103 NKKQQQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDDEGN-----TEKLEALLAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 103 ~k~~~~RIVlFvgSp~~~--d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n-----~~~L~~~~~~vn~~d~Shlv~vp~ 175 (404)
.+++..+|++|+||.-.. +..-+..+++.+...++.|.+|.+..--..| .+-.+.|.+.+..-| .+|.+-|
T Consensus 22 ~~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~AD--gvii~TP 99 (219)
T TIGR02690 22 HKPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSE--GQVWCSP 99 (219)
T ss_pred CCCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCC--EEEEeCC
Confidence 356778999999999864 4445556677777689999999987522112 234455666664333 3444444
No 148
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.06 E-value=2.2e+02 Score=28.74 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=48.2
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE--EEEeCCCCchhhhhhh
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLL 185 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Sh--lv~vp~g~~lLsD~l~ 185 (404)
++.++.-++...+..-.....|.+++-||.+..+-|.+.. ...++ ...++++|.++.-| +|-.|--+++-...++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~~l-~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~ 110 (284)
T PRK14179 34 GLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETI-SQEEL-LDLIERYNQDPTWHGILVQLPLPKHINEEKIL 110 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHH-HHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHH
Confidence 4544444443444445556789999999999999999877 44444 45678999877656 4444543454444443
No 149
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=46.99 E-value=93 Score=29.72 Aligned_cols=54 Identities=22% Similarity=0.232 Sum_probs=34.4
Q ss_pred CCeEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
....+|+|+|+.... .-..+.+++++|++. ++.+.+||=|.. ...++.+++..+
T Consensus 190 ~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~----~~~~~~~~~~~~ 246 (358)
T cd03812 190 EDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGEL----EEEIKKKVKELG 246 (358)
T ss_pred CCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCch----HHHHHHHHHhcC
Confidence 445678888876543 456788888898876 555555553332 246677766543
No 150
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=46.73 E-value=52 Score=23.66 Aligned_cols=34 Identities=12% Similarity=0.314 Sum_probs=27.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 015559 111 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 144 (404)
Q Consensus 111 VlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~f 144 (404)
|-++|......++-+.++...|.+.||+|+.|+.
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4566766666778888999999999999999973
No 151
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=45.63 E-value=59 Score=25.01 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=33.1
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
-+|-.||.... .++-+.++.+.|.+++|+|..|+.|+..
T Consensus 3 a~VsvVG~gm~-~~gv~~ki~~~L~~~~I~v~~i~~~~s~ 41 (66)
T cd04915 3 AIVSVIGRDLS-TPGVLARGLAALAEAGIEPIAAHQSMRN 41 (66)
T ss_pred EEEEEECCCCC-cchHHHHHHHHHHHCCCCEEEEEecCCe
Confidence 36888898885 7777789999999999999999999854
No 152
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=45.56 E-value=81 Score=33.84 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 90 GIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 90 gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
|..+|...+++.+ +...+||+||+| +.+ +.+|=+.+|+.|+..|+.|.|+-++...
T Consensus 43 G~ava~~i~~~~~-~~~~~~VlVlcG-~GN-NGGDGlv~AR~L~~~G~~V~v~~~~~~~ 98 (462)
T PLN03049 43 GLSVASAIAEVYS-PSEYRRVLALCG-PGN-NGGDGLVAARHLHHFGYKPSICYPKRTD 98 (462)
T ss_pred HHHHHHHHHHhcc-cccCCEEEEEEC-CCC-CHHHHHHHHHHHHHCCCceEEEEECCCC
Confidence 4455554444422 212356666655 543 4788889999999999999999988643
No 153
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=45.45 E-value=57 Score=23.09 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=29.4
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
+|-++|......++-+.++.+.|.+.+|+|+.|+-+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 3556677776677778899999999999999887654
No 154
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.27 E-value=2.9e+02 Score=28.04 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEE--EEeCCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHL--VHVPPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shl--v~vp~g~~lLsD~l~s 186 (404)
++.++.-++...+..-.....|.+++-||.+.++-|.+.. ...+ |...++++|.++.-|= |-.|--+|+-...+++
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~~-l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~ 110 (286)
T PRK14184 33 GLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADT-TQEE-LEDLIAELNARPDIDGILLQLPLPKGLDSQRCLE 110 (286)
T ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHh
Confidence 4544444443444445567789999999999999999877 4444 4466689997766553 3334333544444443
No 155
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=44.17 E-value=1.9e+02 Score=30.72 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=62.8
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC-----CCHHHHHHHhcCc-
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT-----SDLGKILACMHGL- 79 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT-----~D~~kils~L~~l- 79 (404)
+++++|+|.||.- | +|+ .=.|+++..++-+.+. +..|.-. |+.+| .|....+..+...
T Consensus 221 lvvL~DVSGSm~~--y--s~~------~L~l~hAl~q~~~R~~--~F~F~TR----Lt~vT~~l~~rD~~~Al~~~~a~v 284 (395)
T COG3552 221 LVVLCDVSGSMSG--Y--SRI------FLHLLHALRQQRSRVH--VFLFGTR----LTRVTHMLRERDLEDALRRLSAQV 284 (395)
T ss_pred eEEEEecccchhh--h--HHH------HHHHHHHHHhccccee--EEEeech----HHHHHHHhccCCHHHHHHHHHhhc
Confidence 6889999999951 2 222 2345666667766666 5566533 22233 4555545444432
Q ss_pred -cccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHh
Q 015559 80 -EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKK 134 (404)
Q Consensus 80 -~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKk 134 (404)
.-.|++.+++.+.- .+..-|+..=.++.-|||+.++--..+...+..+...|.+
T Consensus 285 ~dw~ggTrig~tl~a-F~~~~~~~~L~~gA~VlilsDg~drd~~~~l~~~~~rl~r 339 (395)
T COG3552 285 KDWDGGTRIGNTLAA-FLRRWHGNVLSGGAVVLILSDGLDRDDIPELVTAMARLRR 339 (395)
T ss_pred ccccCCcchhHHHHH-HHccccccccCCceEEEEEecccccCCchHHHHHHHHHHH
Confidence 23588888887642 2222243222344556777666655666666666655543
No 156
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=44.00 E-value=61 Score=36.29 Aligned_cols=95 Identities=16% Similarity=0.073 Sum_probs=59.9
Q ss_pred eEEEEEeCChhhhCCCCC-CCHHHHHHHHHHHHHHHhccC--CcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccc
Q 015559 5 ATLICIDNSEWMRNGDYA-PSRFQAQTEAANLICGAKTQL--NPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEI 81 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~-PtRl~Aq~dAv~~fv~~k~~~--NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~ 81 (404)
.+.++||.|.||-..-+. -|=|+.++.||+.|+...++. .-..+.=++||.---..|-+-.-.....++.-|+++..
T Consensus 3 i~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~~~~~~~a~~~~eik~l~a 82 (888)
T KOG3768|consen 3 IFLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKVACEKLGAVVIEEIKKLHA 82 (888)
T ss_pred eEEEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhhHHhhcccHHHHHHHhhcC
Confidence 478999999999888776 468899999999999876542 11223333444332112222222334445556666643
Q ss_pred -cCCCcHHHHHHHHHHHhh
Q 015559 82 -GGELNLAAGIQVAQLALK 99 (404)
Q Consensus 82 -~G~~sL~~gL~iA~lALK 99 (404)
.|.+-+++++--|-..|.
T Consensus 83 ~~~s~~~~~~~t~AFdlLn 101 (888)
T KOG3768|consen 83 PYGSCQLHHAITEAFDLLN 101 (888)
T ss_pred ccchhhhhHHHHHHhhhhh
Confidence 567888888877775553
No 157
>PRK15045 cellulose biosynthesis protein BcsE; Provisional
Probab=43.96 E-value=1.6e+02 Score=32.30 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCCCcHHHHHHHHHHHhhhcCCCCCCe
Q 015559 29 QTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQ 108 (404)
Q Consensus 29 q~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~ 108 (404)
|.||+...=+-...+....+|.+|+++++ ++.+.++..+.+-- ++.+---+.=..||.-=..-|... -+.+.
T Consensus 32 ~~Da~~l~~Q~i~~q~~~~r~alI~~~~~-~~~ll~l~~~~gp~-----~l~lf~lp~~~~al~~l~~dl~~~--~~~~~ 103 (519)
T PRK15045 32 HEDAISLANQTIASQAETAHVAVISMDSD-PAKIFQLDDSQGPE-----KIRLFSMPNHEKGLYYLPRDLQCS--IDPHN 103 (519)
T ss_pred hhhHHHHHHHHHHhCCCCCeEEEEecCCC-hHHhhcCcccCCCc-----eeeeeecCCCHHHHHHhhHHHhhc--cCCCC
Confidence 44444333233445888899999999887 44444444432211 111111111123333222223222 34667
Q ss_pred EEEEEEcCCCC---CChh----HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 109 RIIVFVGSPIK---HEKK----VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 109 RIVlFvgSp~~---~d~~----~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
|.+||.+.... -... -+.++.+-+++.+..+-||+.|...+.-...|-.+...+.
T Consensus 104 ~l~il~~~~~~w~~~~~~~l~~wl~~l~~w~~~~~~tLLvI~~g~~~~~~~~~L~~~~r~l~ 165 (519)
T PRK15045 104 YLFILVCANNAWQNIPAERLRSWLDKMNKWSRLNHCSLLVINPGNNNDKQFSLLMEEYRSLF 165 (519)
T ss_pred cEEEEEccHHHhhcCCHHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhhHHHHHHhhhhcc
Confidence 87777664331 1333 3456666688899999999999987311344555444443
No 158
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.92 E-value=3.2e+02 Score=27.68 Aligned_cols=76 Identities=13% Similarity=0.134 Sum_probs=49.7
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe--CCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV--PPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v--p~g~~lLsD~l~s 186 (404)
+++++.-++...+..-.....|.+++-||.+.++-|.+.. ...+++ ..++++|.+..-|-+.| |--.|+-.+.+++
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~el~-~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~ 109 (282)
T PRK14169 32 TLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEAT-TQADLL-AKVAELNHDPDVDAILVQLPLPAGLDEQAVID 109 (282)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 5555544454455556667799999999999999999877 454455 55678987665554444 4333554444443
No 159
>PF10293 DUF2405: Domain of unknown function (DUF2405); InterPro: IPR019409 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a conserved region found within FMP27.
Probab=42.77 E-value=40 Score=30.99 Aligned_cols=29 Identities=31% Similarity=0.513 Sum_probs=24.3
Q ss_pred CCCCCH---HHHHHHHhcHHHHHHHHHHHHHH
Q 015559 220 DPNLDP---ELALALRVSMEEERARQEAAAKR 248 (404)
Q Consensus 220 Dp~~DP---ELa~ALr~SlEEe~~rq~~~~~~ 248 (404)
.-++|| ||.|-.|+-+.|+|+|.++++.=
T Consensus 112 ~~eDDPFE~~L~~Iy~lGl~Eq~~Rl~r~~~F 143 (157)
T PF10293_consen 112 ELEDDPFESELGMIYRLGLDEQRERLEREEAF 143 (157)
T ss_pred EEeCCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 346677 99999999999999999987653
No 160
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=40.94 E-value=2.2e+02 Score=28.12 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=46.8
Q ss_pred CCeEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCC-CcHHHHHHHHHHhcCCCCcEEEEeCC-CCchh
Q 015559 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDE-GNTEKLEALLAAVNNNDSSHLVHVPP-GPNAL 180 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~-~n~~~L~~~~~~vn~~d~Shlv~vp~-g~~lL 180 (404)
..+.+|+|+|..... ....+.++.+.+++. ++.+-+||-|.... +..+.++.+.+..+..+.-+++..++ ....+
T Consensus 188 ~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 267 (372)
T cd03792 188 PERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEV 267 (372)
T ss_pred CCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHH
Confidence 455688898866543 556677777777654 68888888775421 12334566665444334444443331 22334
Q ss_pred hhhhhcCcc
Q 015559 181 SDVLLSTPI 189 (404)
Q Consensus 181 sD~l~sspi 189 (404)
.+.+-.+.+
T Consensus 268 ~~~~~~ad~ 276 (372)
T cd03792 268 NALQRASTV 276 (372)
T ss_pred HHHHHhCeE
Confidence 444444444
No 161
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=40.07 E-value=3.2e+02 Score=25.66 Aligned_cols=42 Identities=12% Similarity=-0.009 Sum_probs=28.8
Q ss_pred CCeEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCC
Q 015559 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGED 147 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e 147 (404)
....+|+|+|+.... ....+.++++++++. ++.+.++|-|..
T Consensus 183 ~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~ 227 (366)
T cd03822 183 DGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHP 227 (366)
T ss_pred CCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCcc
Confidence 345678888876543 567788888888886 566666665543
No 162
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.83 E-value=3e+02 Score=27.97 Aligned_cols=76 Identities=20% Similarity=0.209 Sum_probs=49.6
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe--CCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV--PPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v--p~g~~lLsD~l~s 186 (404)
+++++.-++...+..-.....|.+++-||.+.++-|.+.. ...+++ ..++++|.+++-|=+.| |--.|+-.+.+++
T Consensus 34 ~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~el~-~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~ 111 (296)
T PRK14188 34 GLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADT-SQAELL-ALIARLNADPAIHGILVQLPLPKHLDSEAVIQ 111 (296)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHh
Confidence 4544444444445556667899999999999999998877 555555 56689998776554444 4333543444443
No 163
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.20 E-value=2.6e+02 Score=28.29 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe--CCCCchhhhhhh
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV--PPGPNALSDVLL 185 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v--p~g~~lLsD~l~ 185 (404)
++.++.-++...+..-.....|.+++-||.+.++-|.+.. ...+++ ..++++|.++.-|=+.| |--+++-...++
T Consensus 34 ~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~~l~-~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~ 110 (286)
T PRK14175 34 KLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETA-TEEEVL-NELNRLNNDDSVSGILVQVPLPKQVSEQKIL 110 (286)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 4444433343444455567789999999999999999877 455555 55689998776565544 433354444443
No 164
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.07 E-value=3e+02 Score=27.84 Aligned_cols=75 Identities=8% Similarity=0.127 Sum_probs=48.6
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe--CCCCchhhhhhh
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV--PPGPNALSDVLL 185 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v--p~g~~lLsD~l~ 185 (404)
+++++.-++...+..-.....|.+++-||.+.++-|.+.. ... -|...++.+|.+++-|=+.| |--.++-...++
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-s~~-el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~ 111 (284)
T PRK14177 35 KLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQT-TTE-ELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAF 111 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHH-HHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHH
Confidence 4544444444445556667799999999999999998876 444 44566679988766554443 433354444444
No 165
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=38.96 E-value=1.1e+02 Score=30.44 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=38.1
Q ss_pred ceEEEEEeCChhhhCCC----CCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc
Q 015559 4 EATLICIDNSEWMRNGD----YAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG 58 (404)
Q Consensus 4 Ea~vIvIDnSesMrngD----~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~ 58 (404)
.---|+|..|.+...++ +-|.++..-..-+..++.. ..+||||+=+|.-
T Consensus 4 ~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~------g~eV~iVvGGGni 56 (238)
T COG0528 4 KYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDL------GVEVAVVVGGGNI 56 (238)
T ss_pred ceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhc------CcEEEEEECCCHH
Confidence 33457899999999886 5688998888888877764 4589999877754
No 166
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.63 E-value=3.6e+02 Score=27.31 Aligned_cols=76 Identities=11% Similarity=0.048 Sum_probs=48.6
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEE--EEeCCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHL--VHVPPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shl--v~vp~g~~lLsD~l~s 186 (404)
++.++.-++...+..-.....|.+++-||.+.++-|.+.. ...+++ ..++.+|.+..-|= |-.|--+|+-.+.+++
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-t~~el~-~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~ 111 (284)
T PRK14193 34 GLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADA-TQEELN-AVIDELNADPACTGYIVQLPLPKHLDENAVLE 111 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4444433343444555567789999999999999999877 455544 55689998776554 4445334544444443
No 167
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=38.39 E-value=74 Score=26.53 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCCchhhhhh
Q 015559 125 LEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 184 (404)
Q Consensus 125 l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~~lLsD~l 184 (404)
|......|++.||++-+|++|... -++.|++.+.- ... ++ +.|.- -|+..|
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~-----~~~~f~~~~~~-p~~-ly-~D~~~-~lY~~l 52 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPE-----GIEKFCELTGF-PFP-LY-VDPER-KLYKAL 52 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHH-----HHHHHHhccCC-CCc-EE-EeCcH-HHHHHh
Confidence 445577889999999999998865 38999966532 333 44 44432 477776
No 168
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.82 E-value=3.1e+02 Score=27.96 Aligned_cols=91 Identities=12% Similarity=0.066 Sum_probs=54.0
Q ss_pred HHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEE
Q 015559 91 IQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHL 170 (404)
Q Consensus 91 L~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shl 170 (404)
|......||++ ..+-.+.++.-++...+..-.....|.+++-||.+.++-|.+.. ...++ .+.++.+|.++.-|=
T Consensus 20 lk~~i~~l~~~---g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-t~~~l-~~~I~~lN~D~~V~G 94 (301)
T PRK14194 20 VREDVRTLKAA---GIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADT-SQARL-LALIAELNADPSVNG 94 (301)
T ss_pred HHHHHHHHHhC---CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHH-HHHHHHHcCCCCCCe
Confidence 33344456553 12334444444443444555567789999999999999999877 44444 456678988765554
Q ss_pred E--EeCCCCchhhhhhhc
Q 015559 171 V--HVPPGPNALSDVLLS 186 (404)
Q Consensus 171 v--~vp~g~~lLsD~l~s 186 (404)
+ -.|--+|+-...++.
T Consensus 95 IlvqlPLP~~i~~~~i~~ 112 (301)
T PRK14194 95 ILLQLPLPAHIDEARVLQ 112 (301)
T ss_pred EEEeCCCCCCCCHHHHHh
Confidence 3 334333544444443
No 169
>COG4907 Predicted membrane protein [Function unknown]
Probab=37.79 E-value=15 Score=39.72 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHhcCC--CCcEEEEeCCC
Q 015559 139 LDIVNFGEDDEGNTEKLEALLAAVNNN--DSSHLVHVPPG 176 (404)
Q Consensus 139 VdiI~fG~e~~~n~~~L~~~~~~vn~~--d~Shlv~vp~g 176 (404)
|+-+.+|-.. ++++++...+-.. ..||++.+...
T Consensus 517 VYatALGV~d----kVvkam~~~~~~e~ikds~~~i~h~n 552 (595)
T COG4907 517 VYATALGVSD----KVVKAMRKALDMEIIKDSYSPIFHNN 552 (595)
T ss_pred hhhhhhccHH----HHHHHHHHhCcHhHhcccceeEEecc
Confidence 4556666544 4677775444321 25788877653
No 170
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=37.27 E-value=1.1e+02 Score=27.49 Aligned_cols=61 Identities=10% Similarity=0.170 Sum_probs=43.5
Q ss_pred ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCC--------CCh-hHHHHHHHHHHhCCceEEEEEe
Q 015559 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK--------HEK-KVLEMIGRKLKKNSVALDIVNF 144 (404)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~--------~d~-~~l~~~ak~LKknnI~VdiI~f 144 (404)
|.|.-+..+|++.|..+|+. .++-.||-+|-++-.. .|+ ..+...-+.+.+.||.|.+-.-
T Consensus 11 pYg~q~a~~A~~fA~all~~---gh~~v~iFly~DgV~~~~~~~~Pa~dEf~l~~~~~~l~~~~gv~v~~C~~ 80 (126)
T COG1553 11 PYGTESAFSALRFAEALLEQ---GHELVRLFLYQDGVHNGNKGQKPASDEFNLIQAWLELLTEQGVPVKLCVA 80 (126)
T ss_pred CCccHHHHHHHHHHHHHHHc---CCeEEEEEEeeccccccccCCCCcccccchHHHHHHHHHHcCCcEeeeHH
Confidence 56878889999999999986 2566677666655442 123 3455778888999998886543
No 171
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=37.24 E-value=1.9e+02 Score=30.02 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=37.7
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 161 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~ 161 (404)
...+|+|+|..... ....+.+++++|++.++.+-|||-|... -.+.|+.++..
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~--~~~~l~~~~~~ 343 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPE--LEEALRELAER 343 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHH--HHHHHHHHHHH
Confidence 45689999877653 5667888999998888888888877522 13467777654
No 172
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.13 E-value=3.6e+02 Score=27.45 Aligned_cols=77 Identities=19% Similarity=0.165 Sum_probs=50.0
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE--EEEeCCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Sh--lv~vp~g~~lLsD~l~s 186 (404)
+++++.-++...+..-.....|.+++-||.+.++-|.+.. ...+++ ..++++|.++.-| +|-.|--.|+-.+.++.
T Consensus 35 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-t~~el~-~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~ 112 (297)
T PRK14168 35 GLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDI-TEEELL-ALIDKYNNDDSIHGILVQLPLPKHINEKKVLN 112 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4544444444444555567799999999999999998887 555555 5668998866545 44445434555555544
Q ss_pred C
Q 015559 187 T 187 (404)
Q Consensus 187 s 187 (404)
.
T Consensus 113 ~ 113 (297)
T PRK14168 113 A 113 (297)
T ss_pred c
Confidence 3
No 173
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=37.07 E-value=61 Score=25.53 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=27.6
Q ss_pred CeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 015559 107 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 144 (404)
Q Consensus 107 ~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~f 144 (404)
.++||++.+.+. ...+...++.++|.+.++.|.++.+
T Consensus 43 ~~~vii~~D~D~-aG~~a~~~~~~~l~~~g~~~~~~~~ 79 (79)
T cd03364 43 AKEVILAFDGDE-AGQKAALRALELLLKLGLNVRVLTL 79 (79)
T ss_pred CCeEEEEECCCH-HHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 467888877552 2234567899999999999998864
No 174
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=36.99 E-value=74 Score=26.61 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 122 KKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 122 ~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
...+..+++.|++.|+.|++|+++...
T Consensus 10 ~~~~~~~~~~L~~~g~~V~ii~~~~~~ 36 (139)
T PF13477_consen 10 STFIYNLAKELKKRGYDVHIITPRNDY 36 (139)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 456889999999999999999996543
No 175
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.85 E-value=4e+02 Score=26.98 Aligned_cols=76 Identities=9% Similarity=0.197 Sum_probs=50.3
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEE--EEeCCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHL--VHVPPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shl--v~vp~g~~lLsD~l~s 186 (404)
+++++.-++...+..-.....|.+++-||.+..+-|.+.. ...+++ ..++++|.++.-|= |-.|--+|+-.+.++.
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~el~-~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~ 110 (284)
T PRK14170 33 GLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENV-TEEKLL-SVVEELNEDKTIHGILVQLPLPEHISEEKVID 110 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCeEEEecCCCCCCCHHHHHh
Confidence 5555555554445555667799999999999999999887 555555 56689988765554 4445434554444443
No 176
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=36.44 E-value=4.8e+02 Score=26.63 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=39.7
Q ss_pred ceEEEEEeCChh--hhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc
Q 015559 4 EATLICIDNSEW--MRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG 58 (404)
Q Consensus 4 Ea~vIvIDnSes--MrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~ 58 (404)
.++++|+|.|++ ..-.|-..+|+.-.+.....+|+..+ ...+.|+.+.++.
T Consensus 209 ~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~----~~~~piil~~NK~ 261 (342)
T smart00275 209 TAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW----FANTSIILFLNKI 261 (342)
T ss_pred CEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc----ccCCcEEEEEecH
Confidence 589999999998 34566667999999988888887532 3457888888873
No 177
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=36.43 E-value=1.3e+02 Score=27.94 Aligned_cols=108 Identities=23% Similarity=0.238 Sum_probs=62.5
Q ss_pred EEEEecCCccEEEECCCCCHHHHHHHhcCccccCC-CcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHH
Q 015559 50 GVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGE-LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMI 128 (404)
Q Consensus 50 GLVtmag~~a~VLvtlT~D~~kils~L~~l~~~G~-~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ 128 (404)
|||..+|.+ ..+-|+|.+.-|-+ +.+.|. +=|..-|+. |.. ..-.+||+++... ....+...
T Consensus 2 avIla~G~G-tRl~plt~~~pK~l-----l~i~g~~pli~~~l~~----l~~----~g~~~ii~V~~~~---~~~~i~~~ 64 (248)
T PF00483_consen 2 AVILAGGKG-TRLRPLTDTIPKPL-----LPIGGKYPLIDYVLEN----LAN----AGIKEIIVVVNGY---KEEQIEEH 64 (248)
T ss_dssp EEEEEESCC-GGGTTTTTTSSGGG-----SEETTEEEHHHHHHHH----HHH----TTCSEEEEEEETT---THHHHHHH
T ss_pred EEEECCCCC-ccCchhhhcccccc-----ceecCCCcchhhhhhh----hcc----cCCceEEEEEeec---cccccccc
Confidence 577777775 78889987755421 345566 554443333 222 2445655554422 35667777
Q ss_pred HHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCC-CcEEEEeCC
Q 015559 129 GRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND-SSHLVHVPP 175 (404)
Q Consensus 129 ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d-~Shlv~vp~ 175 (404)
.+...+.++.|.+|--.... ....-+......+...+ ...+++++.
T Consensus 65 ~~~~~~~~~~i~~i~~~~~~-Gta~al~~a~~~i~~~~~~~~~lv~~g 111 (248)
T PF00483_consen 65 LGSGYKFGVKIEYIVQPEPL-GTAGALLQALDFIEEEDDDEDFLVLNG 111 (248)
T ss_dssp HTTSGGGTEEEEEEEESSSS-CHHHHHHHTHHHHTTSEE-SEEEEETT
T ss_pred ccccccccccceeeeccccc-chhHHHHHHHHHhhhccccceEEEEec
Confidence 77777778888888766655 44445555555554322 234666654
No 178
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=36.31 E-value=1.6e+02 Score=28.92 Aligned_cols=55 Identities=15% Similarity=0.038 Sum_probs=35.0
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhC-----CceEEEEEeCCCCC-C---cHHHHHHHHHH
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN-----SVALDIVNFGEDDE-G---NTEKLEALLAA 161 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn-----nI~VdiI~fG~e~~-~---n~~~L~~~~~~ 161 (404)
...+|+++|..... +...++++++++++. ++.+.+||=|.... . ..+.|+.+++.
T Consensus 210 ~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~ 274 (392)
T cd03805 210 GKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEE 274 (392)
T ss_pred CceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHH
Confidence 44567788876543 677889999999876 56666666443320 1 12567777766
No 179
>PRK06756 flavodoxin; Provisional
Probab=36.13 E-value=59 Score=28.41 Aligned_cols=39 Identities=5% Similarity=0.303 Sum_probs=31.7
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
++|+|+.+|....++.-...+++.+++.++.|+++.+..
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~ 40 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMD 40 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhc
Confidence 367777788766677777888999999999999988754
No 180
>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]
Probab=36.13 E-value=24 Score=35.47 Aligned_cols=36 Identities=36% Similarity=0.490 Sum_probs=28.1
Q ss_pred CCchhHHHHHHHhcCCCCCCCCCCCCCCCCCCChHHHHHHHHhcccCC
Q 015559 290 KHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDG 337 (404)
Q Consensus 290 ~~e~~~l~~al~mS~~~~~~~~~~~~~~~~~~ee~~ia~a~~ms~~~~ 337 (404)
+.++.-|++|++||.++. ..|++.+..|++.||++.
T Consensus 216 dq~e~d~a~a~a~s~~et------------~~ede~lrsaie~s~~~~ 251 (315)
T KOG2935|consen 216 DQDEEDLARALALSRQET------------EMEDEDLRSAIELSMQSA 251 (315)
T ss_pred ccchHHHHHHHHHHHhhh------------hcccHHHHHHHHhhhhhh
Confidence 356678999999997643 246679999999999953
No 181
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=36.12 E-value=2e+02 Score=29.08 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=29.1
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCC
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGED 147 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e 147 (404)
..++|+|+|..... .-..+.++++++++. ++.+-|||-|..
T Consensus 192 ~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~ 235 (380)
T PRK15484 192 DETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTA 235 (380)
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 45778888876543 556677888888654 688888887654
No 182
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=35.37 E-value=49 Score=28.35 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=17.7
Q ss_pred CChhHHHHHHHHHHhCCceEEEEE
Q 015559 120 HEKKVLEMIGRKLKKNSVALDIVN 143 (404)
Q Consensus 120 ~d~~~l~~~ak~LKknnI~VdiI~ 143 (404)
.+...+.++++.+|+.+.+|-+|.
T Consensus 73 ~t~~~~~~~~~~~~~~~~~vi~it 96 (153)
T cd05009 73 RLEEKLESLIKEVKARGAKVIVIT 96 (153)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEEe
Confidence 344568899999999987665553
No 183
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=35.02 E-value=1.6e+02 Score=28.84 Aligned_cols=79 Identities=20% Similarity=0.305 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCC
Q 015559 88 AAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS 167 (404)
Q Consensus 88 ~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~ 167 (404)
.+|..+....|++... .+.| |.|+|+. ++.+.+++++|++.= .+.|+|+=..- -+.+-.+++++.+|. .+
T Consensus 88 v~G~dl~~~ll~~~~~--~~~~-v~llG~~----~~v~~~a~~~l~~~y-~l~i~g~~~Gy-f~~~e~~~i~~~I~~-s~ 157 (243)
T PRK03692 88 VAGADLWEALMARAGK--EGTP-VFLVGGK----PEVLAQTEAKLRTQW-NVNIVGSQDGY-FTPEQRQALFERIHA-SG 157 (243)
T ss_pred eChHHHHHHHHHHHHh--cCCe-EEEECCC----HHHHHHHHHHHHHHh-CCEEEEEeCCC-CCHHHHHHHHHHHHh-cC
Confidence 3456666666655322 3345 5666765 788999999998875 67778764322 233334567777764 45
Q ss_pred cEEEEeCCC
Q 015559 168 SHLVHVPPG 176 (404)
Q Consensus 168 Shlv~vp~g 176 (404)
.++|.|-=|
T Consensus 158 ~dil~VglG 166 (243)
T PRK03692 158 AKIVTVAMG 166 (243)
T ss_pred CCEEEEECC
Confidence 677777544
No 184
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.59 E-value=4.5e+02 Score=26.73 Aligned_cols=75 Identities=9% Similarity=0.077 Sum_probs=47.7
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEE--eCCCCchhhhhhh
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVH--VPPGPNALSDVLL 185 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~--vp~g~~lLsD~l~ 185 (404)
++.++.-++...+.--.....|.+++-||.+..+-|.+.. ...+ |...++++|.++.-|=+. .|--.|+-...++
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~~-l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~ 110 (288)
T PRK14171 34 KLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTI-HTND-LISKINELNLDNEISGIIVQLPLPSSIDKNKIL 110 (288)
T ss_pred eEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 4444444443444555567799999999999999998877 4444 556668899877655443 3433354344444
No 185
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=34.18 E-value=1.1e+02 Score=31.51 Aligned_cols=113 Identities=12% Similarity=0.151 Sum_probs=63.6
Q ss_pred EEEEEecCCccEEEECCCCCHHHHHHHhcCccc--cCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHH
Q 015559 49 VGVMTMAGKGVRVLVTPTSDLGKILACMHGLEI--GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLE 126 (404)
Q Consensus 49 VGLVtmag~~a~VLvtlT~D~~kils~L~~l~~--~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~ 126 (404)
.-+|+++|+-|.-+ +-..+.+++..++.... -=.++ +.+|..++.+-...-.+|.+ .+-..++.++... .++.
T Consensus 130 ~d~VvlsGSlP~g~--~~d~y~~li~~~~~~g~~vilD~S-g~~L~~~L~~~P~lIKPN~~-EL~~~~g~~~~~~-~d~i 204 (310)
T COG1105 130 DDIVVLSGSLPPGV--PPDAYAELIRILRQQGAKVILDTS-GEALLAALEAKPWLIKPNRE-ELEALFGRELTTL-EDVI 204 (310)
T ss_pred CCEEEEeCCCCCCC--CHHHHHHHHHHHHhcCCeEEEECC-hHHHHHHHccCCcEEecCHH-HHHHHhCCCCCCh-HHHH
Confidence 44588888743211 22445667776665311 11122 22333222211111112222 3334447666553 4888
Q ss_pred HHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCC
Q 015559 127 MIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 177 (404)
Q Consensus 127 ~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~ 177 (404)
+.+++|...+|..-||++|...- |+ -.+++++++.+|+.+
T Consensus 205 ~~a~~l~~~g~~~ViVSlG~~Ga--------l~---~~~~~~~~a~~p~~~ 244 (310)
T COG1105 205 KAARELLAEGIENVIVSLGADGA--------LL---VTAEGVYFASPPKVQ 244 (310)
T ss_pred HHHHHHHHCCCCEEEEEecCccc--------EE---EccCCeEEEeCCCcc
Confidence 88888999999999999999872 11 235788999977754
No 186
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.09 E-value=4.8e+02 Score=26.52 Aligned_cols=77 Identities=10% Similarity=0.122 Sum_probs=50.6
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEE--EEeCCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHL--VHVPPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shl--v~vp~g~~lLsD~l~s 186 (404)
.+.++.-++...+..-.....|.+++-||.+..+-|.+.. ...+++ ..++++|.++.-|= |-.|--+++-.+.+++
T Consensus 40 ~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~el~-~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~ 117 (287)
T PRK14176 40 GLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADT-TQEELL-ELIDSLNKRKDVHGILLQLPLPKHLDPQEAME 117 (287)
T ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHh
Confidence 4544444454556666778899999999999999999887 454455 55689997765454 4445434544444443
Q ss_pred C
Q 015559 187 T 187 (404)
Q Consensus 187 s 187 (404)
.
T Consensus 118 ~ 118 (287)
T PRK14176 118 A 118 (287)
T ss_pred c
Confidence 3
No 187
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=33.67 E-value=2.5e+02 Score=26.16 Aligned_cols=13 Identities=46% Similarity=0.439 Sum_probs=8.5
Q ss_pred CCCHHHHHHHHhc
Q 015559 222 NLDPELALALRVS 234 (404)
Q Consensus 222 ~~DPELa~ALr~S 234 (404)
-.||+|+-.||--
T Consensus 128 ~~d~~l~~kl~~~ 140 (156)
T TIGR01162 128 IKDPELAEKLKEY 140 (156)
T ss_pred CCCHHHHHHHHHH
Confidence 3578887776543
No 188
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.43 E-value=3.8e+02 Score=27.09 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=48.3
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe--CCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV--PPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v--p~g~~lLsD~l~s 186 (404)
+++++.-++...+..-.....|.+++-||.+..+-|.+.. ...+++ ..++++|.++.-|=+.| |--.|+-...++.
T Consensus 33 ~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~el~-~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~ 110 (282)
T PRK14180 33 KLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHT-TESELL-ELIDQLNNDSSVHAILVQLPLPAHINKNNVIY 110 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHh
Confidence 5544444444444555567799999999999999999877 444454 55689997766554443 4333543334433
No 189
>PRK08105 flavodoxin; Provisional
Probab=33.37 E-value=52 Score=29.48 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=31.9
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeC
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 145 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG 145 (404)
+|+||.||-....+.-...+++.|++.++.|.++.+.
T Consensus 3 ~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~ 39 (149)
T PRK08105 3 KVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDP 39 (149)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechh
Confidence 6888889887777888889999999999999988764
No 190
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=33.29 E-value=23 Score=39.28 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=20.6
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 111 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 111 VlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
|||+.++..+--..+.++|++.+..+..+.+|++|...
T Consensus 119 il~~~s~g~Dp~~~i~~lA~~~~~~~~~~~~islG~~~ 156 (707)
T PF03028_consen 119 ILFILSPGSDPSSEIEQLAKKKGFGNKKLQSISLGSGQ 156 (707)
T ss_dssp EEEEE-TT--THHHHHHHHHCTT-----EEEEETTSHH
T ss_pred eEEEeCCCCChHHHHHHHHHHHhhhhhheeecCCCCch
Confidence 66667776554455666666555334788999998755
No 191
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.70 E-value=4e+02 Score=26.93 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=49.1
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe--CCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV--PPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v--p~g~~lLsD~l~s 186 (404)
+++++.-++...+..-.....|.+++-||.+.++-|.+.. ...+ |...++++|.++.-|=+.| |--.|+-.+.++.
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-t~~~-l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~ 109 (282)
T PRK14166 32 CLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENT-TQNE-LLALINTLNHDDSVHGILVQLPLPDHICKDLILE 109 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4544444444444555667789999999999999999876 4444 4466689997766554444 4333544444443
No 192
>PRK05569 flavodoxin; Provisional
Probab=32.66 E-value=82 Score=27.07 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
+|+|+.+|+...++.-...+++.+++.++.|+++.+...
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~ 41 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADA 41 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcC
Confidence 677788888656677777888889889999988887553
No 193
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=32.48 E-value=2.7e+02 Score=28.57 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=37.2
Q ss_pred CCeEEEEEEcCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 015559 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 161 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~ 161 (404)
....+|+|+|..... ....+.++++++++.++.+-++|-|... -.+.++.++..
T Consensus 294 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~--~~~~~~~~~~~ 348 (476)
T cd03791 294 PDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPE--YEEALRELAAR 348 (476)
T ss_pred CCCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHH--HHHHHHHHHHh
Confidence 455688898876643 5667888999998888888888877432 23455666544
No 194
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=32.33 E-value=15 Score=35.63 Aligned_cols=72 Identities=15% Similarity=0.325 Sum_probs=38.7
Q ss_pred CCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCc---HHHHHHHHHHhcCCCCcEEEEeCCCCch
Q 015559 103 NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGN---TEKLEALLAAVNNNDSSHLVHVPPGPNA 179 (404)
Q Consensus 103 ~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n---~~~L~~~~~~vn~~d~Shlv~vp~g~~l 179 (404)
-+.|++|||+|.. .+-.-++.|++.|..|.-|-+.... .. .+.|..++... +-++++++-|+...
T Consensus 37 ~~~HkqKl~l~~s--------aMRhfa~~L~~~G~~V~Y~~~~~~~-~~~s~~~~L~~~~~~~---~~~~~~~~~P~d~~ 104 (224)
T PF04244_consen 37 VPHHKQKLVLFFS--------AMRHFADELRAKGFRVHYIELDDPE-NTQSFEDALARALKQH---GIDRLHVMEPGDYR 104 (224)
T ss_dssp S---HHHHHHHHH--------HHHHHHHHHHHTT--EEEE-TT-TT---SSHHHHHHHHHHHH-------EEEE--S-HH
T ss_pred CcccHHHHHHHHH--------HHHHHHHHHHhCCCEEEEEeCCCcc-ccccHHHHHHHHHHHc---CCCEEEEECCCCHH
Confidence 3567777776633 4677799999999999999999765 22 34454554443 56788888888766
Q ss_pred hhhhhhc
Q 015559 180 LSDVLLS 186 (404)
Q Consensus 180 LsD~l~s 186 (404)
|...|-+
T Consensus 105 l~~~l~~ 111 (224)
T PF04244_consen 105 LEQRLES 111 (224)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6665543
No 195
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=32.21 E-value=2.3e+02 Score=23.81 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=33.7
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCC
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g 176 (404)
-+|+|..|. ...++.++++.+|+.+++|-.|. ... -+..+++.. +-+.+.+|.+
T Consensus 46 l~I~iS~SG---~t~e~i~~~~~a~~~g~~iI~IT--~~~-----~l~~~~~~~----~~~~~~~p~~ 99 (119)
T cd05017 46 LVIAVSYSG---NTEETLSAVEQAKERGAKIVAIT--SGG-----KLLEMAREH----GVPVIIIPKG 99 (119)
T ss_pred EEEEEECCC---CCHHHHHHHHHHHHCCCEEEEEe--CCc-----hHHHHHHHc----CCcEEECCCC
Confidence 344444433 35678899999999998554444 322 266666544 4577777775
No 196
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=32.07 E-value=2.4e+02 Score=25.46 Aligned_cols=38 Identities=21% Similarity=0.458 Sum_probs=24.4
Q ss_pred EEEEEEcCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 109 RIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 109 RIVlFvgSp~~~--d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
+|+++.|||... +..-+..+++.++..+..+.+|.+..
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~~~~~~idl~~ 40 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVRD 40 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHCCCeEEEEEecC
Confidence 477788888643 23333445666777788888887754
No 197
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=32.04 E-value=2.1e+02 Score=28.71 Aligned_cols=54 Identities=20% Similarity=0.112 Sum_probs=35.5
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhCC--ceEEEEEeCCCCCCcHHHHHHHHHHhcC
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNS--VALDIVNFGEDDEGNTEKLEALLAAVNN 164 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKknn--I~VdiI~fG~e~~~n~~~L~~~~~~vn~ 164 (404)
.+.+|+|+|..... ....+.++++.+++.+ +.+-++|-|.. .+.|+++++..+-
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~----~~~l~~~~~~~~l 248 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPK----RILLEEMREKYNL 248 (398)
T ss_pred CceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCch----HHHHHHHHHHhCC
Confidence 45678888866543 5667888888887654 55555554432 3578888877654
No 198
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=31.97 E-value=5.2e+02 Score=25.65 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=34.5
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhCC----ceEEEEEeCCCCC-CcHHHHHHHHHHhcC
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNS----VALDIVNFGEDDE-GNTEKLEALLAAVNN 164 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKknn----I~VdiI~fG~e~~-~n~~~L~~~~~~vn~ 164 (404)
..++|+|+|..... ....+.+++++|++.+ +.+-+||-+.... ...+.++.+++..+-
T Consensus 218 ~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l 281 (405)
T TIGR03449 218 DTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGI 281 (405)
T ss_pred CCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCC
Confidence 45688898876543 5667888888886643 4455555211110 123567777766643
No 199
>PRK10565 putative carbohydrate kinase; Provisional
Probab=31.81 E-value=1.6e+02 Score=31.87 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=30.1
Q ss_pred CeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 107 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 107 ~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
..||+||.| +.+ +.+|=+.+|+.|...++.|.|+-++...
T Consensus 60 ~~~v~vl~G-~GN-NGGDG~v~AR~L~~~G~~V~v~~~~~~~ 99 (508)
T PRK10565 60 ARHWLVLCG-HGN-NGGDGYVVARLAQAAGIDVTLLAQESDK 99 (508)
T ss_pred CCeEEEEEc-CCC-chHHHHHHHHHHHHCCCceEEEEECCcc
Confidence 346666655 443 4566799999999999999999998644
No 200
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=31.42 E-value=1.4e+02 Score=30.62 Aligned_cols=77 Identities=19% Similarity=0.342 Sum_probs=53.0
Q ss_pred cccCCCcHHHHHHHHH--HHhhhcCCCCCCeEEEEEEcCCCCC---ChhHHH----HHHHHHHhCCceEEEEEeCCCCCC
Q 015559 80 EIGGELNLAAGIQVAQ--LALKHRQNKKQQQRIIVFVGSPIKH---EKKVLE----MIGRKLKKNSVALDIVNFGEDDEG 150 (404)
Q Consensus 80 ~~~G~~sL~~gL~iA~--lALKhr~~k~~~~RIVlFvgSp~~~---d~~~l~----~~ak~LKknnI~VdiI~fG~e~~~ 150 (404)
.+.|.++=.+.-..|- .++||+- +..++|+-||||++... .++..+ -+.|.|.+.++++ +|+|.-...
T Consensus 133 pi~Gs~h~Vt~~~lAa~~e~~~~~~-p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~-lisfSRRTp- 209 (329)
T COG3660 133 PINGSPHNVTSQRLAALREAFKHLL-PLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSF-LISFSRRTP- 209 (329)
T ss_pred eccCCCCcccHHHhhhhHHHHHhhC-CCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceE-EEEeecCCc-
Confidence 5678777777766665 5788884 78999999999999852 344333 3456667788876 568877552
Q ss_pred cHHHHHHHHHH
Q 015559 151 NTEKLEALLAA 161 (404)
Q Consensus 151 n~~~L~~~~~~ 161 (404)
+.++.++.+
T Consensus 210 --~~~~s~l~~ 218 (329)
T COG3660 210 --DTVKSILKN 218 (329)
T ss_pred --HHHHHHHHh
Confidence 456666544
No 201
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=31.36 E-value=3.4e+02 Score=29.23 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEE--eCCCC-CCcHHHHHHHHHHhcCC
Q 015559 89 AGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN--FGEDD-EGNTEKLEALLAAVNNN 165 (404)
Q Consensus 89 ~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~--fG~e~-~~n~~~L~~~~~~vn~~ 165 (404)
-|-+++..+|+|...+. - -|.||+. .|+..+..+.++++-+.-.+.||+ |.+.. -.|....+........-
T Consensus 92 LG~~~~~~aL~~~~~~~--~-~~~Fv~n---id~~~~~~~l~~i~~~~tl~iviSKSGtT~Et~~n~~~~r~~~~~~~~~ 165 (446)
T COG0166 92 LGPRAVTEALRPYAPNG--P-RVHFVSN---VDPTYLAEVLKKLDPETTLFIVISKSGTTLETLTNFRLARKWLEKKEEA 165 (446)
T ss_pred HHHHHHHHHhhhhccCC--C-ceEEecC---CCchhhhHHHhccCcccEEEEEEeCCCCcHHHHHHHHHHHHHHHhhhhh
Confidence 46788889998853222 2 3677774 577888888888887778888888 55422 12333333333222111
Q ss_pred CCcEEEEeCCCCchh
Q 015559 166 DSSHLVHVPPGPNAL 180 (404)
Q Consensus 166 d~Shlv~vp~g~~lL 180 (404)
-..||+++......+
T Consensus 166 ~~~~~v~~~~~~~~l 180 (446)
T COG0166 166 AKKHFVATSTNGGAL 180 (446)
T ss_pred hhcEEEEEcCCchHH
Confidence 356999988765433
No 202
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=31.12 E-value=4.7e+02 Score=28.25 Aligned_cols=115 Identities=10% Similarity=0.139 Sum_probs=70.1
Q ss_pred CCcCCeEEEEEec----CCccEEEECCCCC-HHHHHHHhcCccccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCC
Q 015559 43 LNPENTVGVMTMA----GKGVRVLVTPTSD-LGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSP 117 (404)
Q Consensus 43 ~NPesqVGLVtma----g~~a~VLvtlT~D-~~kils~L~~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp 117 (404)
+.|.+.+-++.+. .....+++|+++. ...+..+|+... ...|+. ......+|||++.+
T Consensus 229 ~rp~~~~~~~~~~~~~~~~~V~iIvPl~~r~~~~~~~Fl~~~~--------------~~~l~~---~~~~~L~vV~~~~~ 291 (499)
T PF05679_consen 229 QRPFGPLEIVPMPYVTESTRVHIIVPLSGREADWFRRFLENFE--------------KVCLET---DDNVFLTVVLFYDP 291 (499)
T ss_pred EcccCceeEeccccccCCCEEEEEEEecCccHHHHHHHHHHHH--------------HHhccc---CCceEEEEEEecCc
Confidence 4455555555442 3456888999988 888888887642 344544 22344677777776
Q ss_pred CCC-ChhHHHHHHHHHHh--CCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCC
Q 015559 118 IKH-EKKVLEMIGRKLKK--NSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (404)
Q Consensus 118 ~~~-d~~~l~~~ak~LKk--nnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g 176 (404)
... +..++..+++.+++ ...++.+|.+..+.+.....|..-+... +.++=+..+..+
T Consensus 292 ~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~--~~d~L~f~~Dvd 351 (499)
T PF05679_consen 292 SDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKF--PPDSLLFFCDVD 351 (499)
T ss_pred ccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccC--CCCcEEEEEeCC
Confidence 543 34556677777765 4788999999844434455555555433 234544444444
No 203
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=30.65 E-value=1.1e+02 Score=30.68 Aligned_cols=19 Identities=32% Similarity=0.270 Sum_probs=15.7
Q ss_pred HHHHHHHHhCCceEEEEEe
Q 015559 126 EMIGRKLKKNSVALDIVNF 144 (404)
Q Consensus 126 ~~~ak~LKknnI~VdiI~f 144 (404)
..+.+.++.+||.|+.|++
T Consensus 158 ~~~l~~a~~~Gv~~d~VNi 176 (294)
T cd06543 158 LNVLEAAAANGVDLDTVNI 176 (294)
T ss_pred HHHHHHHHHcCCCcceeee
Confidence 4678888999999998875
No 204
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.61 E-value=4.7e+02 Score=26.46 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=47.9
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE--EEEeCCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Sh--lv~vp~g~~lLsD~l~s 186 (404)
++.++.-++...+..-.....|.+++-||.+.++-|.+.. ...+ |...++++|.++.-| +|-.|--+|+-.+.+++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~e-l~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~ 111 (284)
T PRK14190 34 GLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADI-TEEE-LLALIDRLNADPRINGILVQLPLPKHIDEKAVIE 111 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4544444443444555567799999999999999999877 4544 445667998776544 33344333544444433
No 205
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=30.56 E-value=1.4e+02 Score=32.08 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=36.1
Q ss_pred EEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 109 RIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 109 RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
..|+|+|..... ....++++.+++++. ++.+.|+|-|.+. +.|+.+++..+
T Consensus 320 ~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~----~~l~~~i~~~~ 373 (500)
T TIGR02918 320 FSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGEK----QKLQKIINENQ 373 (500)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchhH----HHHHHHHHHcC
Confidence 368888876543 556677777777654 6788888887654 47888887664
No 206
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=30.55 E-value=2.1e+02 Score=28.38 Aligned_cols=52 Identities=13% Similarity=0.271 Sum_probs=34.3
Q ss_pred HHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 96 LALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 96 lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
..|+.......+.++|.|+|.+...=.--+..++..+++.|.+|-+|++-..
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3444433334556788888766544333356778889999999999987643
No 207
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=30.52 E-value=1.4e+02 Score=22.59 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=20.0
Q ss_pred CChhHHHHHHHHHHhCCceEEEEEeC
Q 015559 120 HEKKVLEMIGRKLKKNSVALDIVNFG 145 (404)
Q Consensus 120 ~d~~~l~~~ak~LKknnI~VdiI~fG 145 (404)
.......+++++|++.|++|.+.-.+
T Consensus 12 ~~~~~a~~i~~~Lr~~g~~v~~~~~~ 37 (91)
T cd00859 12 GALSEALELAEQLRDAGIKAEIDYGG 37 (91)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEecCC
Confidence 34456888999999999999875543
No 208
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.37 E-value=5.9e+02 Score=25.78 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=49.1
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE--EEEeCCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Sh--lv~vp~g~~lLsD~l~s 186 (404)
++.++.-++...+..-.....|.+++-||.+..+-|.+.. ...+++ ..++.+|.++.-| +|-.|--.|+-.+.+++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~~l~-~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~ 111 (285)
T PRK14189 34 GLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADL-SEAELL-ARIDELNRDPKIHGILVQLPLPKHIDSHKVIE 111 (285)
T ss_pred eEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHh
Confidence 4444444444445555667799999999999999999877 454444 5567898866544 44445434544444444
Q ss_pred C
Q 015559 187 T 187 (404)
Q Consensus 187 s 187 (404)
.
T Consensus 112 ~ 112 (285)
T PRK14189 112 A 112 (285)
T ss_pred h
Confidence 3
No 209
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=30.34 E-value=2.2e+02 Score=31.20 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=26.5
Q ss_pred EEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeE-EEEE
Q 015559 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTV-GVMT 53 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqV-GLVt 53 (404)
|-+|||||.|||-.-+ +.+..++-.+.+.+-+-+--+-| |+-|
T Consensus 416 VtlviDnSGSMrGRpI-----tvAatcAdilArtLeRcgVk~eIlGFTT 459 (620)
T COG4547 416 VTLVIDNSGSMRGRPI-----TVAATCADILARTLERCGVKVEILGFTT 459 (620)
T ss_pred heeeeccCCCcCCcce-----ehhHHHHHHHHHHHHHcCCceEEeeeee
Confidence 5689999999997533 34555555566655444443333 5555
No 210
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=30.22 E-value=3.7e+02 Score=24.48 Aligned_cols=81 Identities=21% Similarity=0.334 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCc
Q 015559 89 AGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSS 168 (404)
Q Consensus 89 ~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~S 168 (404)
++..+....|++... ...| |.|+|+. ++.+.+++.+|++.-=.+.|+|.-..-+ +..-.+++++.+|..+-.
T Consensus 32 ~g~dl~~~l~~~~~~--~~~~-ifllG~~----~~~~~~~~~~l~~~yP~l~ivg~~~g~f-~~~~~~~i~~~I~~~~pd 103 (172)
T PF03808_consen 32 TGSDLFPDLLRRAEQ--RGKR-IFLLGGS----EEVLEKAAANLRRRYPGLRIVGYHHGYF-DEEEEEAIINRINASGPD 103 (172)
T ss_pred CHHHHHHHHHHHHHH--cCCe-EEEEeCC----HHHHHHHHHHHHHHCCCeEEEEecCCCC-ChhhHHHHHHHHHHcCCC
Confidence 344455555544211 2234 5555644 6778888888888877777777654431 334556666666654444
Q ss_pred EEEEeCCCC
Q 015559 169 HLVHVPPGP 177 (404)
Q Consensus 169 hlv~vp~g~ 177 (404)
.+++-...|
T Consensus 104 iv~vglG~P 112 (172)
T PF03808_consen 104 IVFVGLGAP 112 (172)
T ss_pred EEEEECCCC
Confidence 444443333
No 211
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=30.20 E-value=59 Score=29.40 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=37.5
Q ss_pred EEEEEcCCCCCC-hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 015559 110 IIVFVGSPIKHE-KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 161 (404)
Q Consensus 110 IVlFvgSp~~~d-~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~ 161 (404)
-||+.||+.... -.....+++.+.+.+++|--|+||-.. ++.+|-..
T Consensus 45 ~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~Q~-----la~~~G~~ 92 (192)
T PF00117_consen 45 GIIISGGPGSPYDIEGLIELIREARERKIPILGICLGHQI-----LAHALGGK 92 (192)
T ss_dssp EEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHHHH-----HHHHTTHE
T ss_pred EEEECCcCCccccccccccccccccccceEEEEEeehhhh-----hHHhcCCc
Confidence 477789998864 688899999999999999999999655 55555443
No 212
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=30.15 E-value=1.4e+02 Score=23.29 Aligned_cols=35 Identities=9% Similarity=0.178 Sum_probs=28.5
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeC
Q 015559 111 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 145 (404)
Q Consensus 111 VlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG 145 (404)
|-++|.....+++-+.++...|.+.+|+|+.|+-+
T Consensus 4 Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~s 38 (75)
T cd04912 4 LNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTS 38 (75)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEcC
Confidence 44556667778888999999999999999998743
No 213
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=29.96 E-value=1.1e+02 Score=28.70 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=38.0
Q ss_pred eEEEEEEcCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCCC-------CcHHHHHHHHHHhcCCCCcEEEEeCC
Q 015559 108 QRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDDE-------GNTEKLEALLAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 108 ~RIVlFvgSp~~~--d~~~l~~~ak~LKknnI~VdiI~fG~e~~-------~n~~~L~~~~~~vn~~d~Shlv~vp~ 175 (404)
++|++|.|||... +..-+..+++.++..++.|.+|.+..-.. ...+-++.+.+++..-| .+|.+-|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD--~iIi~tP 75 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQAD--GLIVATP 75 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCC--EEEEECC
Confidence 3688888888653 33344556677777888888887764110 01234556666664323 4554444
No 214
>PRK05568 flavodoxin; Provisional
Probab=29.89 E-value=1e+02 Score=26.41 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=31.0
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
+++||.+|....+..-...+++.+++.++.|.++.+....
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~ 42 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEAS 42 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4666667776667777788889999999999999886533
No 215
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.86 E-value=4.9e+02 Score=26.46 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=49.1
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEE--EeCCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLV--HVPPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv--~vp~g~~lLsD~l~s 186 (404)
+++++.-++...+..-.....|.+++-||.+..+-|.+.. ...+++ ..++++|.++.-|=+ -.|--.|+-...++.
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~el~-~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~ 110 (295)
T PRK14174 33 GLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADT-TEEHLL-KKIEDLNNDPDVHGILVQQPLPKQIDEFAVTL 110 (295)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 5555544454455556667899999999999999999877 454454 556899987655543 334333543343433
No 216
>PRK06703 flavodoxin; Provisional
Probab=29.74 E-value=82 Score=27.62 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=31.8
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
+++|+.+|....++.-...+++.|.+.++.|+++.+...
T Consensus 3 kv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 41 (151)
T PRK06703 3 KILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGM 41 (151)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhC
Confidence 677777887666777778889999999999999887653
No 217
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.56 E-value=4.7e+02 Score=26.47 Aligned_cols=77 Identities=13% Similarity=0.103 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe--CCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV--PPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v--p~g~~lLsD~l~s 186 (404)
++.++.-++...+..-.....|.+++-||.+.++-|-+.. ...+++ +.++++|.++.-|=+.| |--+++-.+.++.
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-s~~el~-~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~ 112 (285)
T PRK10792 35 GLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETT-SEAELL-ALIDELNADPTIDGILVQLPLPAHIDNVKVLE 112 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4433333333334445567789999999999999998776 444455 55689998766554444 4333544444443
Q ss_pred C
Q 015559 187 T 187 (404)
Q Consensus 187 s 187 (404)
.
T Consensus 113 ~ 113 (285)
T PRK10792 113 R 113 (285)
T ss_pred c
Confidence 3
No 218
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=29.40 E-value=97 Score=26.30 Aligned_cols=52 Identities=10% Similarity=0.108 Sum_probs=34.4
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~v 162 (404)
..|+|+..+.. -....++++.|+++||.+.+|.+-.-..-..+.+..++.+.
T Consensus 10 ~di~iia~G~~---~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~ 61 (124)
T PF02780_consen 10 ADITIIAYGSM---VEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKT 61 (124)
T ss_dssp SSEEEEEETTH---HHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHH
T ss_pred CCEEEEeehHH---HHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHh
Confidence 34555554443 46788999999999999999998764323344555544443
No 219
>PRK04155 chaperone protein HchA; Provisional
Probab=29.38 E-value=2.4e+02 Score=28.43 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=21.9
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEeC
Q 015559 121 EKKVLEMIGRKLKKNSVALDIVNFG 145 (404)
Q Consensus 121 d~~~l~~~ak~LKknnI~VdiI~fG 145 (404)
.+.++..-...|++.|+.|+|++..
T Consensus 75 ~~~E~~~P~~~L~~AG~eVdiAS~~ 99 (287)
T PRK04155 75 HPVETLLPMYHLHKAGFEFDVATLS 99 (287)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEecC
Confidence 5667788899999999999999984
No 220
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=29.27 E-value=1.6e+02 Score=32.52 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=34.3
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 90 GIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 90 gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
|..+|...+++.+ +...+||+||.| +.+ +.+|=+.+|+.|+..|..|.|+-.+.
T Consensus 119 G~avA~~I~~~~~-~~~~~~VlVlcG-pGN-NGGDGLVaAR~L~~~G~~V~V~~~~~ 172 (544)
T PLN02918 119 GLSVAASIAEVYK-PGEYSRVLAICG-PGN-NGGDGLVAARHLHHFGYKPFVCYPKR 172 (544)
T ss_pred HHHHHHHHHHhcc-cccCCEEEEEEC-CCc-CHHHHHHHHHHHHHCCCceEEEEcCC
Confidence 4455544444421 111246666644 543 46788889999999999999877553
No 221
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.17 E-value=5.5e+02 Score=26.04 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=48.5
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe--CCCCchhhhhhh
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV--PPGPNALSDVLL 185 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v--p~g~~lLsD~l~ 185 (404)
++.++.-++...+..-.....|.+++-||.+.++-|.+.. ...++ ...++.+|.++.-|=+.| |--.|+-.+.++
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~el-~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~ 109 (285)
T PRK14191 33 KLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENT-TEAEL-LSLIKDLNTDQNIDGILVQLPLPRHIDTKMVL 109 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHH-HHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 4544444444445555667799999999999999999877 44444 455789998776663333 433354334443
No 222
>PF13362 Toprim_3: Toprim domain
Probab=28.79 E-value=1.7e+02 Score=23.74 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=31.1
Q ss_pred CCeEEEEEEcCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
..++|||+.+-+... ......++++++++.++.+.++--+.
T Consensus 40 ~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p~~ 81 (96)
T PF13362_consen 40 PGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEPGP 81 (96)
T ss_pred CCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 667788887755431 45678889999999999999987743
No 223
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=28.44 E-value=1.4e+02 Score=24.28 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=41.2
Q ss_pred cccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCC----CChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK----HEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~----~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
.+.|...|.++=.+-...+..... ...+.|++=.|... ..-+.|..+.+++++.|+.+.+++.....
T Consensus 13 ~~~G~l~f~~~~~~~~~l~~~~~~--~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v 83 (100)
T cd06844 13 RLEGELDHHSVEQFKEELLHNITN--VAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLTGISPAV 83 (100)
T ss_pred EEEEEecHhhHHHHHHHHHHHHHh--CCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEECCCHHH
Confidence 455666676665554433322111 22344555455554 23567889999999999999999876543
No 224
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=28.09 E-value=24 Score=37.45 Aligned_cols=22 Identities=23% Similarity=0.518 Sum_probs=16.8
Q ss_pred CCCChHHHHHHHHhcccCCCCC
Q 015559 319 VAEDDPELALALQLSMQDGTKD 340 (404)
Q Consensus 319 ~~~ee~~ia~a~~ms~~~~~~~ 340 (404)
.-.|||+||+||+||+.+.+.+
T Consensus 162 ~k~EeEdiaKAi~lSL~E~~~Q 183 (462)
T KOG2199|consen 162 SKQEEEDIAKAIELSLKEQEKQ 183 (462)
T ss_pred ccccHHHHHHHHHhhHHHHhhc
Confidence 4478889999999999865543
No 225
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=28.09 E-value=8.1e+02 Score=26.63 Aligned_cols=178 Identities=16% Similarity=0.151 Sum_probs=91.5
Q ss_pred EecCCccEEE-ECCCCCHHHHHHHhcCccccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC-ChhHHHHHHH
Q 015559 53 TMAGKGVRVL-VTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-EKKVLEMIGR 130 (404)
Q Consensus 53 tmag~~a~VL-vtlT~D~~kils~L~~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~-d~~~l~~~ak 130 (404)
...|..+.|- .|..-|+.++....+.-. . +-....|+.+ ...++||+.|+-.--. .-...+.+.+
T Consensus 242 ~~~gr~v~v~~~PiGID~~~f~~~~~~~~------~----~~~~~~lr~~---~~~~kiIl~VDRLDy~KGI~~kl~Afe 308 (487)
T TIGR02398 242 DTGNRVVKLGAHPVGTDPERIRSALAAAS------I----REMMERIRSE---LAGVKLILSAERVDYTKGILEKLNAYE 308 (487)
T ss_pred eECCEEEEEEEEECEecHHHHHHHhcCch------H----HHHHHHHHHH---cCCceEEEEecccccccCHHHHHHHHH
Confidence 3344444443 556668888766554211 1 1112224332 1245788888744322 2233344444
Q ss_pred HH-HhC-----CceEEEEEeCCCCC-----CcHHHHHHHHHHhcCC----CCcEEEEeCCC-C-------chhhhhhhcC
Q 015559 131 KL-KKN-----SVALDIVNFGEDDE-----GNTEKLEALLAAVNNN----DSSHLVHVPPG-P-------NALSDVLLST 187 (404)
Q Consensus 131 ~L-Kkn-----nI~VdiI~fG~e~~-----~n~~~L~~~~~~vn~~----d~Shlv~vp~g-~-------~lLsD~l~ss 187 (404)
++ +++ +|.+-+|+.++... +-...++.++..+|+. +-..++.+... + -.++|+.+-+
T Consensus 309 ~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT 388 (487)
T TIGR02398 309 RLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWIT 388 (487)
T ss_pred HHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEEC
Confidence 43 442 57888888876331 1145678888888864 22333333322 1 1256888888
Q ss_pred ccccCCCC------------CC----CchhHhHHHhhhcCCCCCccCCCCCCCHHHH----HHHHhcHHHHHHHHHHHHH
Q 015559 188 PIFTGDGE------------GG----SGFAAAAAAAAASGASGYEFGVDPNLDPELA----LALRVSMEEERARQEAAAK 247 (404)
Q Consensus 188 pi~~g~~~------------~~----~~~~~~~~~~~~~~~~~~efgvDp~~DPELa----~ALr~SlEEe~~rq~~~~~ 247 (404)
|+--|-+- .| |-|+|. +....+ -+=|||.+-.++| .||.|+.+|.++|-++-.+
T Consensus 389 ~lrDGmNLVa~Eyva~~~~~~GvLILSefaGa----a~~l~~--AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~ 462 (487)
T TIGR02398 389 PLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGA----AVELKG--ALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFD 462 (487)
T ss_pred ccccccCcchhhHHhhhcCCCCCEEEeccccc----hhhcCC--CEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88543220 00 001100 000011 1348998766766 5677888888888777665
Q ss_pred HH
Q 015559 248 RA 249 (404)
Q Consensus 248 ~~ 249 (404)
.-
T Consensus 463 ~v 464 (487)
T TIGR02398 463 AV 464 (487)
T ss_pred HH
Confidence 43
No 226
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=27.97 E-value=2.8e+02 Score=23.81 Aligned_cols=81 Identities=15% Similarity=0.243 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC-Ch--------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHH
Q 015559 87 LAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-EK--------KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEA 157 (404)
Q Consensus 87 L~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~-d~--------~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~ 157 (404)
..++..++....++ +..+-++|-|++.+... .+ +.+..+.+.+++++|.--+|.+-... .+.+++
T Consensus 86 ~~~~~~~~~~l~~~---~~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~---~~~i~~ 159 (175)
T PF13727_consen 86 GGAGRELAEALRSN---PRLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPWSE---EEQIKR 159 (175)
T ss_dssp SHHHHHHHHHHHH-----SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TTS----HHHHHH
T ss_pred echHHHHHHHHHhh---hhcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCccC---HHHHHH
Confidence 34455555544333 44667788888665532 22 46778888889999988888876544 467888
Q ss_pred HHHHhcCCCCcEEEEeC
Q 015559 158 LLAAVNNNDSSHLVHVP 174 (404)
Q Consensus 158 ~~~~vn~~d~Shlv~vp 174 (404)
+++.... .+.++-.||
T Consensus 160 ii~~~~~-~~v~v~~vP 175 (175)
T PF13727_consen 160 IIEELEN-HGVRVRVVP 175 (175)
T ss_dssp HHHHHHT-TT-EEEE--
T ss_pred HHHHHHh-CCCEEEEeC
Confidence 8888863 456666665
No 227
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.95 E-value=5.7e+02 Score=26.08 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=49.0
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe--CCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV--PPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v--p~g~~lLsD~l~s 186 (404)
+++++.-++...+..-.....|.+++-||.+.++-|.+.. ...+ |...++.+|.++.-|=+.| |--.++-.+.++.
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~e-l~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~ 110 (297)
T PRK14167 33 GLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDA-PAEE-LYDTIDELNADEDVHGILVQMPVPDHVDDREVLR 110 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHh
Confidence 5555544454444555567789999999999999999887 4544 5566689998765554443 4333544444443
No 228
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.73 E-value=3e+02 Score=29.79 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=37.2
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcC
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN 164 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~ 164 (404)
-.|+++++|.+... +-.-+++.|+..|..+-|.=+=. . .|++.++.|+.+..+
T Consensus 267 P~V~Ilcgpgnngg-dg~v~gRHL~~~G~~~vi~~pk~-s-~~~~~~~~L~~q~~~ 319 (453)
T KOG2585|consen 267 PLVAILCGPGNNGG-DGLVCGRHLAQHGYTPVIYYPKR-S-LNVDLYKSLVKQCDG 319 (453)
T ss_pred ceEEEEeCCCCccc-hhHHHHHHHHHcCceeEEEeecC-c-cchhHHHHHHHHhcC
Confidence 35777788876533 33449999999997665555543 3 367888999988854
No 229
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=27.66 E-value=2.9e+02 Score=26.24 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=44.6
Q ss_pred cCccccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 77 HGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 77 ~~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
..|-+.|.+.-..+-++....+.-. +.+..+.|+|++.||... -..-..+...++.....|.+++.|-..
T Consensus 36 r~I~l~g~I~~~~~~~i~~~L~~l~-~~~~~~~I~l~INSpGG~-v~~g~~I~d~i~~~~~~v~t~~~G~aa 105 (207)
T PRK12553 36 RIIFLGGQVDDASANDVMAQLLVLE-SIDPDRDITLYINSPGGS-VTAGDAIYDTIQFIRPDVQTVCTGQAA 105 (207)
T ss_pred eEEEEcceECHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCCc-HHHHHHHHHHHHhcCCCcEEEEEeehh
Confidence 3456788877777666555444332 334567899999999754 334445556666666677777777544
No 230
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=27.55 E-value=2.2e+02 Score=23.01 Aligned_cols=26 Identities=8% Similarity=0.042 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHhCC---ceEEEEEeCCCC
Q 015559 123 KVLEMIGRKLKKNS---VALDIVNFGEDD 148 (404)
Q Consensus 123 ~~l~~~ak~LKknn---I~VdiI~fG~e~ 148 (404)
.....++..+...+ ..|.|+-+|...
T Consensus 18 ~~~~~~~~~~~~~~~~~~~v~v~~~g~gv 46 (122)
T PF02635_consen 18 KIALRLANAAAAMGDYGHDVVVFFHGDGV 46 (122)
T ss_dssp HHHHHHHHHHHHTTHTTSEEEEEE-GGGG
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEEEchHH
Confidence 44445555555555 666666666543
No 231
>PRK09271 flavodoxin; Provisional
Probab=27.48 E-value=1.1e+02 Score=27.40 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=29.9
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
++|+|+.+|-...+++-...+++.|+..++.|.+..+..
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~ 39 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDV 39 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEeccc
Confidence 367777788766677778888999999999887766543
No 232
>PRK09004 FMN-binding protein MioC; Provisional
Probab=27.43 E-value=81 Score=28.13 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=30.0
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 144 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~f 144 (404)
+|+||.+|-....+.-...+++.++..++.|.++..
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~ 38 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHG 38 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEecc
Confidence 678888888777777888899999999999998754
No 233
>PRK13981 NAD synthetase; Provisional
Probab=27.14 E-value=8.1e+02 Score=26.38 Aligned_cols=92 Identities=22% Similarity=0.144 Sum_probs=51.3
Q ss_pred CCCCC--CHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCCCcHHHHHHHHHH
Q 015559 19 GDYAP--SRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQL 96 (404)
Q Consensus 19 gD~~P--tRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~~G~~sL~~gL~iA~l 96 (404)
..+.| ++.....+++..++..|++..-...| ||.+.|+. . .++ .+.+|..
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-vvglSGGi-----------D--------------Sa~--~a~la~~ 302 (540)
T PRK13981 251 GPIAPPPEGEAEDYRALVLGLRDYVRKNGFPGV-VLGLSGGI-----------D--------------SAL--VAAIAVD 302 (540)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCeE-EEECCCCH-----------H--------------HHH--HHHHHHH
Confidence 34555 56778888888888888877544444 44555441 1 111 1122333
Q ss_pred HhhhcCCCCCCeEEEE-EEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 97 ALKHRQNKKQQQRIIV-FVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 97 ALKhr~~k~~~~RIVl-FvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
+|.+ .+++. ++.+.. ..+.++..+-+.+++-||...+|.+..
T Consensus 303 a~g~-------~~v~~~~~p~~~-~~~~~~~~a~~~a~~lgi~~~~i~i~~ 345 (540)
T PRK13981 303 ALGA-------ERVRAVMMPSRY-TSEESLDDAAALAKNLGVRYDIIPIEP 345 (540)
T ss_pred HhCc-------CcEEEEECCCCC-CCHHHHHHHHHHHHHcCCeEEEEECHH
Confidence 3321 24443 333332 344556666667778899999988754
No 234
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=27.07 E-value=4e+02 Score=24.28 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCC
Q 015559 88 AAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS 167 (404)
Q Consensus 88 ~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~ 167 (404)
.+|..+....|++... ...| |.|+|+. ++.+.++++++++.-=.+.|+|+-..- -...-...+++.+|...-
T Consensus 29 ~~g~dl~~~ll~~~~~--~~~~-v~llG~~----~~~~~~~~~~l~~~yp~l~i~g~~~g~-~~~~~~~~i~~~I~~~~p 100 (171)
T cd06533 29 VTGSDLMPALLELAAQ--KGLR-VFLLGAK----PEVLEKAAERLRARYPGLKIVGYHHGY-FGPEEEEEIIERINASGA 100 (171)
T ss_pred cCcHHHHHHHHHHHHH--cCCe-EEEECCC----HHHHHHHHHHHHHHCCCcEEEEecCCC-CChhhHHHHHHHHHHcCC
Confidence 3455666666665422 3455 4455654 788999999999997778888853333 222334446777775443
Q ss_pred cEEEEeC
Q 015559 168 SHLVHVP 174 (404)
Q Consensus 168 Shlv~vp 174 (404)
..+++-.
T Consensus 101 div~vgl 107 (171)
T cd06533 101 DILFVGL 107 (171)
T ss_pred CEEEEEC
Confidence 3343333
No 235
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=26.97 E-value=3e+02 Score=23.27 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=32.7
Q ss_pred EEEE--cCCCCCChhHHHHHHHHHHhCC-ceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeC
Q 015559 111 IVFV--GSPIKHEKKVLEMIGRKLKKNS-VALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVP 174 (404)
Q Consensus 111 VlFv--gSp~~~d~~~l~~~ak~LKknn-I~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp 174 (404)
|||+ ||+... ......+++.+++.. .+|. ++|=+.. +-++..++++...+-.+++.+|
T Consensus 3 illvgHGSr~~~-~~~~~~l~~~l~~~~~~~v~-~~~lE~~----P~i~~~l~~l~~~G~~~i~lvP 63 (103)
T cd03413 3 VVFMGHGTDHPS-NAVYAALEYVLREEDPANVF-VGTVEGY----PGLDDVLAKLKKAGIKKVTLMP 63 (103)
T ss_pred EEEEECCCCchh-hhHHHHHHHHHHhcCCCcEE-EEEEcCC----CCHHHHHHHHHHcCCCEEEEEe
Confidence 4555 455443 466778888887754 3333 3443322 2345555555545566788777
No 236
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=26.92 E-value=1.8e+02 Score=23.77 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=40.3
Q ss_pred cccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC----ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH----EKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~----d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
.+.|...+.++=.+-...+..... ...+. ||+=.+.... .-+.+..+.+++++.|+.+.++|+-...
T Consensus 15 ~l~G~L~~~~a~~~~~~l~~~~~~-~~~~~-vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v 85 (109)
T cd07041 15 PLIGDLDDERAEQLQERLLEAISR-RRARG-VIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEV 85 (109)
T ss_pred eeeeeECHHHHHHHHHHHHHHHHH-cCCCE-EEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 456777777775554433222111 12333 4443334431 3457788999999999999999986544
No 237
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=26.85 E-value=6.7e+02 Score=25.27 Aligned_cols=95 Identities=8% Similarity=0.119 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHh-----------cCccccCCCcHHHHHHH
Q 015559 25 RFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACM-----------HGLEIGGELNLAAGIQV 93 (404)
Q Consensus 25 Rl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L-----------~~l~~~G~~sL~~gL~i 93 (404)
++....+.+...+..+++++|....=||..-++. |.+...++..+ +-+....+.-...|+..
T Consensus 84 ~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgS-------tD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~~ 156 (333)
T PTZ00260 84 RLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGS-------KDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRI 156 (333)
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCC-------CCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHHH
Confidence 5666666555555666667776666676666553 22333333332 11111222334455554
Q ss_pred HHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHh
Q 015559 94 AQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKK 134 (404)
Q Consensus 94 A~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKk 134 (404)
+.. + .+..+|+|++++...++..+.++.+.+..
T Consensus 157 Gi~---~-----a~gd~I~~~DaD~~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 157 GML---A-----SRGKYILMVDADGATDIDDFDKLEDIMLK 189 (333)
T ss_pred HHH---H-----ccCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 433 2 12368999999999999999999888864
No 238
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=26.63 E-value=6.9e+02 Score=25.36 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~v 162 (404)
.+|+|++. ...+...+.++.+++++..-.+.+|-.|... ...+.++.+++..
T Consensus 234 ~vil~~~~-~~~~~~~ll~A~~~l~~~~~~~~liivG~g~-~r~~~l~~~~~~~ 285 (425)
T PRK05749 234 PVWIAAST-HEGEEELVLDAHRALLKQFPNLLLILVPRHP-ERFKEVEELLKKA 285 (425)
T ss_pred cEEEEeCC-CchHHHHHHHHHHHHHHhCCCcEEEEcCCCh-hhHHHHHHHHHhC
Confidence 45666553 3334556677777776643333444445433 2223566666543
No 239
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=26.60 E-value=1.8e+02 Score=33.42 Aligned_cols=148 Identities=16% Similarity=0.221 Sum_probs=82.2
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc--------------------------
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG-------------------------- 58 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~-------------------------- 58 (404)
-+|+++|+|-||.+- |+-.+..-..+.+..-+.--.-++|+=+|..+.
T Consensus 134 DLYyLMDlS~SM~DD------l~~l~~LG~~L~~~m~~lT~nfrlGFGSFVDK~v~P~i~~~pekl~npc~~~~~C~ppf 207 (783)
T KOG1226|consen 134 DLYYLMDLSYSMKDD------LENLKSLGTDLAREMRKLTSNFRLGFGSFVDKTVSPYISTTPEKLRNPCPNYKNCAPPF 207 (783)
T ss_pred eEEEEeecchhhhhh------HHHHHHHHHHHHHHHHHHhccCCccccchhccccccccccCcHHhcCCCCCcccCCCCc
Confidence 378999999999863 333333333333332222233456665554432
Q ss_pred -cEEEECCCCCHHHHHHHhcCccccCCCcHHH-HHHHHHHHh---hhcCCCCCCeEEEEEEc---------C-------C
Q 015559 59 -VRVLVTPTSDLGKILACMHGLEIGGELNLAA-GIQVAQLAL---KHRQNKKQQQRIIVFVG---------S-------P 117 (404)
Q Consensus 59 -a~VLvtlT~D~~kils~L~~l~~~G~~sL~~-gL~iA~lAL---Khr~~k~~~~RIVlFvg---------S-------p 117 (404)
..=+.+||.|...+.+..++-++.|+.+--. |+..-++|. ++.-=++...|++||+. + |
T Consensus 208 gfkhvLsLT~~~~~F~~~V~~q~ISgNlDaPEGGfDAimQaavC~~~IGWR~~a~~lLVF~td~~~H~a~DgkLaGiv~p 287 (783)
T KOG1226|consen 208 GFKHVLSLTNDAEEFNEEVGKQRISGNLDAPEGGFDAIMQAAVCTEKIGWRNDATRLLVFSTDAGFHFAGDGKLAGIVQP 287 (783)
T ss_pred ccceeeecCCChHHHHHHHhhceeccCCCCCCchHHHHHhhhhccccccccccceeEEEEEcCcceeeecccceeeEecC
Confidence 2234678999999999999877766543222 233333332 33333556778898871 1 0
Q ss_pred C--CC--------------ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 015559 118 I--KH--------------EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (404)
Q Consensus 118 ~--~~--------------d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~v 162 (404)
. .+ |-..+-.++.+|+++||.+. |.--. ++..+.+.+...+
T Consensus 288 nDG~CHL~~~g~Yt~S~~qdyPSia~l~~kl~~~ni~~I---FAVt~-~~~~~Y~~l~~li 344 (783)
T KOG1226|consen 288 NDGQCHLDKNGEYTQSTTQDYPSIAQLAQKLADNNINTI---FAVTK-NSQSLYEELSNLI 344 (783)
T ss_pred CCCccccCCCCccceecCCCCCcHHHHHHHHhhhcchhH---HHHhh-hhhhHHHhhhhhC
Confidence 0 01 22356788999999999653 33222 2334455554433
No 240
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=26.24 E-value=2.3e+02 Score=29.25 Aligned_cols=62 Identities=24% Similarity=0.246 Sum_probs=42.4
Q ss_pred cCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCCh--------------hHH--------HHHHHHHHhCCceE
Q 015559 82 GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEK--------------KVL--------EMIGRKLKKNSVAL 139 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~--------------~~l--------~~~ak~LKknnI~V 139 (404)
+|-+++...|++|+.|=++ .-+-.|-|-.|+.=.|| ..| ..+...||.+||.+
T Consensus 52 ~g~~~~~~~~~~akrak~~-----Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~p 126 (332)
T PF07745_consen 52 GGYNDLEDVIALAKRAKAA-----GMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTP 126 (332)
T ss_dssp TTTTSHHHHHHHHHHHHHT-----T-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--E
T ss_pred cccCCHHHHHHHHHHHHHC-----CCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCc
Confidence 5889999999999988554 23345677787763332 223 24558999999999
Q ss_pred EEEEeCCCC
Q 015559 140 DIVNFGEDD 148 (404)
Q Consensus 140 diI~fG~e~ 148 (404)
++|-+|.|.
T Consensus 127 d~VQVGNEi 135 (332)
T PF07745_consen 127 DMVQVGNEI 135 (332)
T ss_dssp SEEEESSSG
T ss_pred cEEEeCccc
Confidence 999999986
No 241
>PF09875 DUF2102: Uncharacterized protein conserved in archaea (DUF2102); InterPro: IPR012025 The exact functionof this protein unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=26.15 E-value=1.7e+02 Score=25.63 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=52.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCC
Q 015559 112 VFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (404)
Q Consensus 112 lFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g 176 (404)
||++++....|.++..-+-.+ +..|.|.=-+||.-.+--.+..+++++.+..-+.+|+.+-.-|
T Consensus 2 ivl~~~~~v~Ps~l~~~~~~~-~~~v~iKETCFG~~i~Ge~e~V~~~i~~iR~ld~~~IF~KdRG 65 (104)
T PF09875_consen 2 IVLSSEANVSPSDLAMKLYEL-SLPVTIKETCFGAMIEGEEEEVDKVIEEIRKLDPNHIFVKDRG 65 (104)
T ss_pred EEeCCCCCcCHHHHHHHHHhc-CCCceeeecceeeEEECCHHHHHHHHHHHHhhCCCceEeecCC
Confidence 567777667888888877776 4559999999999775567899999999988888898887766
No 242
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=26.12 E-value=1.6e+02 Score=22.05 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=29.0
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015559 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (404)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (404)
+|-.+|..+...++-+.++-+.|.++||+|.-++
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~ 36 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTA 36 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEE
Confidence 5777898888889999999999999999996555
No 243
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=25.95 E-value=2.9e+02 Score=26.29 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=26.9
Q ss_pred eEEEEEEcCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 108 QRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 108 ~RIVlFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
.+.|+|+|..... +-..+.++.+++++ ++++.+||-|...
T Consensus 193 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~-~~~l~ivG~~~~~ 233 (363)
T cd04955 193 GRYYLLVGRIVPENNIDDLIEAFSKSNS-GKKLVIVGNADHN 233 (363)
T ss_pred CcEEEEEecccccCCHHHHHHHHHhhcc-CceEEEEcCCCCc
Confidence 3457788876543 45566666666655 7899999988544
No 244
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=25.89 E-value=5.8e+02 Score=26.66 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=48.5
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE--EEEeCCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Sh--lv~vp~g~~lLsD~l~s 186 (404)
.++++.-+....+..-.....|.+++-||.+.++-|.+.. ...+++ ..++++|.++.-| +|-.|--.|+-.+.+++
T Consensus 88 ~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~-te~ell-~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~ 165 (345)
T PLN02897 88 GLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDC-TEGQIL-SALRKFNEDTSIHGILVQLPLPQHLDESKILN 165 (345)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4444443343444555567799999999999999999887 555555 5668998766544 44444434544444443
No 245
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=25.77 E-value=2.4e+02 Score=29.08 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=43.1
Q ss_pred ccccCCCcHHHHHHHHHHHhhhcC------CCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 79 LEIGGELNLAAGIQVAQLALKHRQ------NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 79 l~~~G~~sL~~gL~iA~lALKhr~------~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
++..+...|..+--.|..+|.+.. +-..+++|+|+-+|. +=-..++..+|..+ .+.|+..+...
T Consensus 124 l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsg-----gVG~~aiQlAk~~~-~~~v~t~~s~e 193 (347)
T KOG1198|consen 124 LSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSG-----GVGTAAIQLAKHAG-AIKVVTACSKE 193 (347)
T ss_pred cChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCc-----HHHHHHHHHHHhcC-CcEEEEEcccc
Confidence 455678889999999999999875 333445666665543 33345667777778 56777776654
No 246
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=25.63 E-value=2.4e+02 Score=24.60 Aligned_cols=49 Identities=14% Similarity=0.275 Sum_probs=39.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 111 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 111 VlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
|-|.++|. | ....++-+.|+.+||...+|.|.... -..+.|..+++.+.
T Consensus 3 itiy~~p~-C--~t~rka~~~L~~~gi~~~~~~y~~~~-~s~~eL~~~l~~~g 51 (117)
T COG1393 3 ITIYGNPN-C--STCRKALAWLEEHGIEYTFIDYLKTP-PSREELKKILSKLG 51 (117)
T ss_pred EEEEeCCC-C--hHHHHHHHHHHHcCCCcEEEEeecCC-CCHHHHHHHHHHcC
Confidence 33446663 3 26788899999999999999999988 78889999998886
No 247
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.55 E-value=1.7e+02 Score=22.34 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=32.7
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~v 162 (404)
++|+|.| -+...+.++.+.+|+.+|.+.+-+.=++. +-.=.++.|++.+
T Consensus 2 ~~ll~~g----~~~~el~~~l~~~r~~~~~~~~kAvlT~t-N~~Wt~~~L~~El 50 (58)
T PF12646_consen 2 EFLLFSG----FSGEELDKFLDALRKAGIPIPLKAVLTPT-NINWTLKDLLEEL 50 (58)
T ss_pred CEEEECC----CCHHHHHHHHHHHHHcCCCcceEEEECCC-cccCcHHHHHHHH
Confidence 4566644 25678999999999999977776666655 3333445554443
No 248
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=25.55 E-value=2.2e+02 Score=26.36 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=28.3
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEeCCCCCCc---HHHHHHHHH
Q 015559 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGN---TEKLEALLA 160 (404)
Q Consensus 121 d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n---~~~L~~~~~ 160 (404)
|+..+.+.++.++..||..-.|+|==.. .| ..+++.++.
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~-~np~hE~~v~eii~ 173 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSY-RNPEHEQRVAEIIR 173 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCC-CCHHHHHHHHHHHH
Confidence 7889999999999999988888765433 33 344455443
No 249
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.55 E-value=2.8e+02 Score=28.17 Aligned_cols=74 Identities=16% Similarity=0.131 Sum_probs=46.9
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe--CCCCchhhhhh
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV--PPGPNALSDVL 184 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v--p~g~~lLsD~l 184 (404)
++.++.-++...+..-.....|.+++-||.+.++-|.+.. ...+ +..++..+|.++.-|=+.| |--+|+-...+
T Consensus 31 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~e-l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i 106 (287)
T PRK14173 31 HLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPEST-SQEE-LLELIARLNADPEVDGILVQLPLPPHIDFQRV 106 (287)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHH
Confidence 3444444343344445567789999999999999998876 4444 5566789998776554444 43335433334
No 250
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=25.48 E-value=3.5e+02 Score=24.57 Aligned_cols=68 Identities=12% Similarity=0.150 Sum_probs=37.6
Q ss_pred ccccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 79 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 79 l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
+-+.|.+.-..+-++....+.-+ .....+.|+|++.||... ...-..+...|+..+..|.++..|-..
T Consensus 12 i~i~g~I~~~~~~~i~~~l~~~~-~~~~~~~i~l~inSpGG~-v~~~~~i~~~l~~~~~~v~t~~~g~aa 79 (171)
T cd07017 12 IFLGGPIDDEVANLIIAQLLYLE-SEDPKKPIYLYINSPGGS-VTAGLAIYDTMQYIKPPVSTICLGLAA 79 (171)
T ss_pred EEEcCEEcHHHHHHHHHHHHHHH-ccCCCCceEEEEECCCCC-HHHHHHHHHHHHhcCCCEEEEEEeEeh
Confidence 34556655444444333222221 223457899999999763 333445555556556677777766543
No 251
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=25.47 E-value=6.7e+02 Score=26.43 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEE--EEeCCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHL--VHVPPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shl--v~vp~g~~lLsD~l~s 186 (404)
.++++.-++...+.--.....|.+++-||.+.++.|-+.. ...+ +.++++.+|.++.-|= |-.|--.|+-.+.++.
T Consensus 105 ~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~-te~e-ll~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~ 182 (364)
T PLN02616 105 GLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDS-TEQE-VLKFISGFNNDPSVHGILVQLPLPSHMDEQNILN 182 (364)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4444444444445555567789999999999999998876 4444 4466788987665444 3345434544444444
No 252
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=25.46 E-value=48 Score=27.54 Aligned_cols=17 Identities=35% Similarity=0.769 Sum_probs=12.0
Q ss_pred CCCCCChHHHHHHHHhh
Q 015559 366 GVDPEDPSVKDVLTSMQ 382 (404)
Q Consensus 366 gvdp~~~~i~~~l~~~~ 382 (404)
||||+|+.||.++..+.
T Consensus 51 g~~p~s~evq~l~~~~~ 67 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWM 67 (118)
T ss_dssp T--TT-HHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHH
Confidence 79999999999987764
No 253
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=25.31 E-value=4.8e+02 Score=24.39 Aligned_cols=84 Identities=14% Similarity=0.223 Sum_probs=49.4
Q ss_pred cCCCcH------HHHHHHHHHHhhhcCC----CCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCc
Q 015559 82 GGELNL------AAGIQVAQLALKHRQN----KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGN 151 (404)
Q Consensus 82 ~G~~sL------~~gL~iA~lALKhr~~----k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n 151 (404)
.|+..+ ...++.+...|.++.. +....|||++ +-+.+.+.-.+.-++..|+.+|. +||-+|... .
T Consensus 49 ~gei~va~~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~vv~~-t~~gd~H~lG~~~v~~~l~~~G~--~vi~LG~~v-p- 123 (197)
T TIGR02370 49 DGELFLPHVMMSADAMLAGIKVLTPEMEKAVETEVLGKVVCG-VAEGDVHDIGKNIVVTMLRANGF--DVIDLGRDV-P- 123 (197)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEE-eCCCchhHHHHHHHHHHHHhCCc--EEEECCCCC-C-
Confidence 466665 5556555555554322 1233455444 44555567777777888899998 667778877 3
Q ss_pred HHHHHHHHHHhcCCCCcEEEEeC
Q 015559 152 TEKLEALLAAVNNNDSSHLVHVP 174 (404)
Q Consensus 152 ~~~L~~~~~~vn~~d~Shlv~vp 174 (404)
.+.|++.+.. .+.++|.+.
T Consensus 124 ---~e~~v~~~~~-~~pd~v~lS 142 (197)
T TIGR02370 124 ---IDTVVEKVKK-EKPLMLTGS 142 (197)
T ss_pred ---HHHHHHHHHH-cCCCEEEEc
Confidence 4555555543 344555554
No 254
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.29 E-value=6.6e+02 Score=25.60 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=49.0
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe--CCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV--PPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v--p~g~~lLsD~l~s 186 (404)
+++++.-++...+..-.....|.+++-||.+.++-|.+.. ...+ +...++++|.++.-|-+.| |--.|+-...++.
T Consensus 34 ~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~e-l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~ 111 (297)
T PRK14186 34 GLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADT-SQAE-VEALIAQLNQDERVDGILLQLPLPKHLDEVPLLH 111 (297)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4544444444444555567799999999999999998776 4444 4466689988776554444 4333544444443
Q ss_pred C
Q 015559 187 T 187 (404)
Q Consensus 187 s 187 (404)
.
T Consensus 112 ~ 112 (297)
T PRK14186 112 A 112 (297)
T ss_pred c
Confidence 3
No 255
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.21 E-value=6.6e+02 Score=25.36 Aligned_cols=72 Identities=8% Similarity=0.128 Sum_probs=46.0
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe--CCCCchhhhhhh
Q 015559 111 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV--PPGPNALSDVLL 185 (404)
Q Consensus 111 VlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v--p~g~~lLsD~l~ 185 (404)
||.+| +...+..-.....|.+++-||.+..+-|.+.. ...+++ ..++++|.++.-|=+.| |--.|+-...++
T Consensus 37 ii~vg-~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~el~-~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~ 110 (278)
T PRK14172 37 SILVG-NDGGSIYYMNNQEKVANSLGIDFKKIKLDESI-SEEDLI-NEIEELNKDNNVHGIMLQLPLPKHLDEKKIT 110 (278)
T ss_pred EEEeC-CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCeEEEcCCCCCCCCHHHHH
Confidence 44444 33333444456689999999999999999877 555544 55689998776665444 433354344443
No 256
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=25.02 E-value=2.2e+02 Score=24.56 Aligned_cols=13 Identities=23% Similarity=0.682 Sum_probs=6.5
Q ss_pred ccCCCCCCCHHHH
Q 015559 216 EFGVDPNLDPELA 228 (404)
Q Consensus 216 efgvDp~~DPELa 228 (404)
-||+.+..|+.+.
T Consensus 130 ~~~~g~~~~~~~L 142 (155)
T PF13768_consen 130 TFGIGSDADADFL 142 (155)
T ss_pred EEEECChhHHHHH
Confidence 3455555555443
No 257
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=24.96 E-value=2.2e+02 Score=22.30 Aligned_cols=65 Identities=9% Similarity=0.244 Sum_probs=39.1
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCCchhhhh
Q 015559 111 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDV 183 (404)
Q Consensus 111 VlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~~lLsD~ 183 (404)
|+|++..... .+...+++.+++.+-.+-+|.++... + ...+.... +. +-..|+.-|-.+.-|...
T Consensus 46 ~iiid~~~~~--~~~~~~~~~i~~~~~~~~ii~~t~~~-~-~~~~~~~~-~~---g~~~~l~kp~~~~~l~~~ 110 (112)
T PF00072_consen 46 LIIIDLELPD--GDGLELLEQIRQINPSIPIIVVTDED-D-SDEVQEAL-RA---GADDYLSKPFSPEELRAA 110 (112)
T ss_dssp EEEEESSSSS--SBHHHHHHHHHHHTTTSEEEEEESST-S-HHHHHHHH-HT---TESEEEESSSSHHHHHHH
T ss_pred EEEEEeeecc--ccccccccccccccccccEEEecCCC-C-HHHHHHHH-HC---CCCEEEECCCCHHHHHHh
Confidence 5666644433 56677888888877777788888666 3 23333333 22 345677777665445444
No 258
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=24.96 E-value=4e+02 Score=28.28 Aligned_cols=49 Identities=22% Similarity=0.408 Sum_probs=40.5
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 159 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~ 159 (404)
+|+||-.|.-..++.-...+|+.|.|.+|.|.++.|.... -.+|++.+.
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~--~~eI~~~i~ 296 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDAD--PSEIVEEIL 296 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCC--HHHHHHHHh
Confidence 7888888887788888899999999999999999999875 235555554
No 259
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=24.87 E-value=5.5e+02 Score=23.59 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=30.2
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHh--CCceEEEEEeCCCC
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKK--NSVALDIVNFGEDD 148 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKk--nnI~VdiI~fG~e~ 148 (404)
...+|+|+|..... ....+.++++.+++ .++.+.++|-|...
T Consensus 187 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~ 231 (359)
T cd03808 187 DDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEE 231 (359)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcc
Confidence 45678888865543 56678888999886 46777777777655
No 260
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=24.77 E-value=2.2e+02 Score=29.34 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCC
Q 015559 124 VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (404)
Q Consensus 124 ~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g 176 (404)
...++++.|++++|.|.||.+-.-.--..+.|.+++.++ .++|+|-.+
T Consensus 242 ~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t-----~~vvtvEE~ 289 (356)
T PLN02683 242 YALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKT-----NRLVTVEEG 289 (356)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhc-----CeEEEEeCC
Confidence 456777888888999999988875433345555555444 357777654
No 261
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=24.72 E-value=1.7e+02 Score=22.92 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=31.0
Q ss_pred hcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015559 100 HRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (404)
Q Consensus 100 hr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (404)
.|+.+.....+++|+......+..++.++.+.|++.-..+.++|
T Consensus 34 s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~~~~~lG 77 (80)
T cd04905 34 SRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTEFVKVLG 77 (80)
T ss_pred EEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCeEEEee
Confidence 35544445557777765544457888899999999877777776
No 262
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=24.41 E-value=1.3e+02 Score=28.66 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=26.8
Q ss_pred eEEEEEEcCCCC-CChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 108 QRIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 108 ~RIVlFvgSp~~-~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
+||++|..++.. ..+.....+++.|++.|+.|.++.+...
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 366666666542 3466677778888888888777776543
No 263
>PLN02235 ATP citrate (pro-S)-lyase
Probab=24.38 E-value=4.5e+02 Score=28.22 Aligned_cols=136 Identities=16% Similarity=0.132 Sum_probs=67.9
Q ss_pred HhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHH----HhcCccccCCCcHHHHHHHHHHHhhhcC-CCCCCeEEEEE
Q 015559 39 AKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILA----CMHGLEIGGELNLAAGIQVAQLALKHRQ-NKKQQQRIIVF 113 (404)
Q Consensus 39 ~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils----~L~~l~~~G~~sL~~gL~iA~lALKhr~-~k~~~~RIVlF 113 (404)
.|+--+|..+||+|+-+++.+ --|-|.-+.+- --+=+.++|+++-..--+.+...|.-.. +++.+ .|+|.
T Consensus 262 ~y~~v~ldG~Ig~mvnGAGla----maTmD~I~~~G~~g~pANFlDvGG~a~~e~v~~a~~iil~~~~~~~~vk-~ilvn 336 (423)
T PLN02235 262 KFTVLNPKGRIWTMVAGGGAS----VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATANPDGR-KRALL 336 (423)
T ss_pred ceEEeCCCCeEEEEecCcHHH----HHHHHHHHHcCCCCCCceeeecCCCCCHHHHHHHHHHHHhhhhcCCCCc-EEEEE
Confidence 344468889999999887631 11222222111 0011356787775555444555552110 23344 44444
Q ss_pred E-cCCCCCCh-----hHHHHHHHHHH----hCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCCchhhhh
Q 015559 114 V-GSPIKHEK-----KVLEMIGRKLK----KNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDV 183 (404)
Q Consensus 114 v-gSp~~~d~-----~~l~~~ak~LK----knnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~~lLsD~ 183 (404)
+ |+-..||. ..+++..+.++ ..+|+|.| -++- .|.+.=.++++.+-...+-.+.+..|..+ |.|+
T Consensus 337 IfGGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivV-Rl~G---tN~eeG~~il~e~~~~~gl~i~~~~~~~~-m~~a 411 (423)
T PLN02235 337 IGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFV-RRGG---PNYQKGLAKMRALGEEIGVPIEVYGPEAT-MTGI 411 (423)
T ss_pred EecccccchhhhhhhhHHHHHHHHhhhccccCCccEEE-ECCC---CCHHHHHHHHHHhHHhcCCcEEEeCCCCC-HHHH
Confidence 4 44445653 45666666554 36788844 4432 45556666665431111223455555544 6665
Q ss_pred h
Q 015559 184 L 184 (404)
Q Consensus 184 l 184 (404)
+
T Consensus 412 ~ 412 (423)
T PLN02235 412 C 412 (423)
T ss_pred H
Confidence 5
No 264
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.37 E-value=5.9e+02 Score=25.91 Aligned_cols=77 Identities=10% Similarity=0.111 Sum_probs=48.5
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe--CCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV--PPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v--p~g~~lLsD~l~s 186 (404)
+++++.-++...+..-.....|.+++-||.+.++-|.+.. ...+++ ..++.+|.++.-|=+.| |--+|+-.+.+++
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~el~-~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~ 110 (293)
T PRK14185 33 HLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDV-TEEELL-AKVRELNQDDDVDGFIVQLPLPKHISEQKVIE 110 (293)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCeEEEecCCCCCCCHHHHHh
Confidence 4544444443334444457789999999999999999887 444444 56679997766554444 4333554444544
Q ss_pred C
Q 015559 187 T 187 (404)
Q Consensus 187 s 187 (404)
.
T Consensus 111 ~ 111 (293)
T PRK14185 111 A 111 (293)
T ss_pred c
Confidence 3
No 265
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=24.33 E-value=4e+02 Score=24.96 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=38.6
Q ss_pred ccccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 79 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 79 l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
|-++|..+-..+-++....+.-. .....+.|+|++.||... -..-..+...|+..+..|.+|++|-..
T Consensus 29 I~l~g~I~~~~~~~ii~~L~~l~-~~~~~~~i~l~InSpGG~-v~~g~~I~d~l~~~~~~v~t~~~G~Aa 96 (191)
T TIGR00493 29 IFLSGEVNDSVANLIVAQLLFLE-AEDPEKDIYLYINSPGGS-ITAGLAIYDTMQFIKPDVSTICIGQAA 96 (191)
T ss_pred EEEccEEChHHHHHHHHHHHHhh-ccCCCCCEEEEEECCCCC-HHHHHHHHHHHHhcCCCEEEEEEEeec
Confidence 45677665555544444333222 234456799999999754 333344455555555566677666544
No 266
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=24.29 E-value=4e+02 Score=24.81 Aligned_cols=59 Identities=12% Similarity=0.241 Sum_probs=37.4
Q ss_pred CeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeC
Q 015559 107 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVP 174 (404)
Q Consensus 107 ~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp 174 (404)
+.|||++ +-+.+.+.-.+.-++..|+.+|..| |.+|... . .+.|++.+.. .+.++|.+.
T Consensus 82 ~~~vl~~-~~~gd~H~lG~~~v~~~l~~~G~~v--i~lG~~~-p----~~~l~~~~~~-~~~d~v~lS 140 (201)
T cd02070 82 KGKVVIG-TVEGDIHDIGKNLVATMLEANGFEV--IDLGRDV-P----PEEFVEAVKE-HKPDILGLS 140 (201)
T ss_pred CCeEEEE-ecCCccchHHHHHHHHHHHHCCCEE--EECCCCC-C----HHHHHHHHHH-cCCCEEEEe
Confidence 4455444 5465667777778888999999865 8888776 2 4555555543 234555554
No 267
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=24.18 E-value=1.1e+02 Score=30.08 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
+||++++++- ..+..-...+++.|++.+..|.+|+++.
T Consensus 2 ~~i~i~~~g~-gG~~~~~~~la~~L~~~g~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGT-GGHVFPALALAEELKKRGWEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcc-hHhhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 3544444322 2333444566777777777776666643
No 268
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=24.17 E-value=4.5e+02 Score=26.99 Aligned_cols=121 Identities=15% Similarity=0.174 Sum_probs=71.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCCCcHHHHHHHHHHHh
Q 015559 19 GDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLAL 98 (404)
Q Consensus 19 gD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~~G~~sL~~gL~iA~lAL 98 (404)
++-.|---+++.+.+..|.....+.+|. ++.+.+.+.+++-.. .+.++..++.+-.. .
T Consensus 179 ~~~~~~~~~~m~~~i~~Ia~~ar~~~P~----~~II~NnG~eil~~~---~g~~~~~idgV~~E--------------s- 236 (315)
T TIGR01370 179 GDNRPGAAAEMIAFVCEIAAYARAQNPQ----FVIIPQNGEELLRDD---HGGLAATVSGWAVE--------------E- 236 (315)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHCCC----EEEEecCchhhhhcc---ccchhhhceEEEec--------------c-
Confidence 3333444466777888887776778886 344444445555322 13333333333111 1
Q ss_pred hhcCCCCCCeEEEEEEc--CCC-CCChhHHHHHHHHHHhCCceEEEEEeCCCCC---CcHHHHHHHHHHhcCCCCcEEEE
Q 015559 99 KHRQNKKQQQRIIVFVG--SPI-KHEKKVLEMIGRKLKKNSVALDIVNFGEDDE---GNTEKLEALLAAVNNNDSSHLVH 172 (404)
Q Consensus 99 Khr~~k~~~~RIVlFvg--Sp~-~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~---~n~~~L~~~~~~vn~~d~Shlv~ 172 (404)
+|.. ... +.+-..+.+-++++++.|+.|.+|-+....+ +|....+.+.+.....+.-.||.
T Consensus 237 -------------lf~~~~~~~~e~dr~~~l~~L~~~~~~G~~Vl~IDY~~~~~~~~~n~~~~~~~~~~~~~~Gf~pYVs 303 (315)
T TIGR01370 237 -------------LFYYAANRPTEAERQRRLLALYRLWQQGKFVLTVDYVDDGTKTNENPARMKDAAEKARAAGLIPYVA 303 (315)
T ss_pred -------------eEEcCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEEecCCcccchhhHHHHHHHHHHHHHcCCeeeec
Confidence 1111 111 2244556677888999999999999998641 25677788888888777767765
Q ss_pred eC
Q 015559 173 VP 174 (404)
Q Consensus 173 vp 174 (404)
-+
T Consensus 304 d~ 305 (315)
T TIGR01370 304 ES 305 (315)
T ss_pred Cc
Confidence 54
No 269
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=24.16 E-value=2.6e+02 Score=28.87 Aligned_cols=49 Identities=10% Similarity=0.046 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 015559 122 KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 122 ~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~ 175 (404)
-....++|+.|+++||++-||.+.+--.--...+.+..+++ -++|++-.
T Consensus 204 v~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A~~t-----~~IvT~Ee 252 (312)
T COG3958 204 VAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAARET-----GRIVTAEE 252 (312)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHHhhc-----CcEEEEec
Confidence 34568899999999999999999985432344555665555 36777754
No 270
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=23.89 E-value=2.2e+02 Score=28.15 Aligned_cols=55 Identities=20% Similarity=0.120 Sum_probs=34.0
Q ss_pred eEEEEEEcCCCCC---ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCC
Q 015559 108 QRIIVFVGSPIKH---EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS 167 (404)
Q Consensus 108 ~RIVlFvgSp~~~---d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~ 167 (404)
...|+|+|..... +-..+++.+.+++. ++.+.+||-|... +.|+.+++..+-.++
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~-~~~l~ivG~g~~~----~~l~~~~~~~~l~~~ 237 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTG-EWQLHIIGDGSDF----EKCKAYSRELGIEQR 237 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCC-CeEEEEEeCCccH----HHHHHHHHHcCCCCe
Confidence 3467888864322 23445555555543 6888888877543 578888877654333
No 271
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=23.85 E-value=1.1e+02 Score=25.72 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=29.0
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
|+|+.+|....++.-...+++.++..++.|+++.+..-
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~ 38 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADA 38 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccC
Confidence 35666887666677777888889999999998887643
No 272
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.64 E-value=7.5e+02 Score=25.05 Aligned_cols=76 Identities=14% Similarity=0.089 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe--CCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV--PPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v--p~g~~lLsD~l~s 186 (404)
++.++.-++...+..-.....|.+++-||.+.++-|.+.. ...+ +...++.+|.++.-|=+.| |--.|+-.+.++.
T Consensus 32 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-t~~~-l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~ 109 (282)
T PRK14182 32 GLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATT-TQAE-LLALIARLNADPAVHGILVQLPLPKHVDERAVLD 109 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4444444443444445557799999999999999998877 4444 5566689998776554444 4333544444433
No 273
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.59 E-value=7.4e+02 Score=25.06 Aligned_cols=76 Identities=13% Similarity=0.099 Sum_probs=48.7
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe--CCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV--PPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v--p~g~~lLsD~l~s 186 (404)
++.++.-++...+..-.....|.+++-||.+.++-|.+.. ...+ |...++++|.++.-|=+.| |--.|+-.+.++.
T Consensus 33 ~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~~-l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~ 110 (281)
T PRK14183 33 GLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTI-SQKE-ILETIAMMNNNPNIDGILVQLPLPKHIDTTKILE 110 (281)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHh
Confidence 4444433443444555667789999999999999998877 4444 5566789998766554444 4333544444443
No 274
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=23.41 E-value=90 Score=29.64 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=28.9
Q ss_pred EEEEcCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 111 IVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 111 VlFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
|||.|||... +......+++.+.+.+++|-=|+||-..
T Consensus 50 liisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC~G~Ql 88 (214)
T PRK07765 50 VLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCLGHQA 88 (214)
T ss_pred EEECCCCCChhhcchHHHHHHHHHhCCCCEEEEccCHHH
Confidence 7777888653 2334457899999999999999999655
No 275
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=23.40 E-value=1.8e+02 Score=27.51 Aligned_cols=51 Identities=14% Similarity=0.039 Sum_probs=35.5
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 015559 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 161 (404)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~ 161 (404)
-|.|+|+.-...++-+..+++.+|+.|+++.+..=|... ...+.++.+...
T Consensus 73 ~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~-~~~~~~~~ll~~ 123 (246)
T PRK11145 73 GVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVR-RYDPVIDELLDV 123 (246)
T ss_pred eEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCC-cchHHHHHHHHh
Confidence 477888766667777789999999999987766555533 123566666543
No 276
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=23.39 E-value=3.4e+02 Score=23.97 Aligned_cols=63 Identities=16% Similarity=0.009 Sum_probs=41.7
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC----------C-CcHHHHHHHHHHhcCCCCcEEEEeCCC
Q 015559 111 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD----------E-GNTEKLEALLAAVNNNDSSHLVHVPPG 176 (404)
Q Consensus 111 VlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~----------~-~n~~~L~~~~~~vn~~d~Shlv~vp~g 176 (404)
++++..|...+-.+...+.+.+++.++++.-|-+---. . .+...+++|++.+ .-.++..||-.
T Consensus 95 viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ip~~ 168 (169)
T cd02037 95 AVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEEL---GVPLLGKIPLD 168 (169)
T ss_pred EEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHc---CCCEEEeccCC
Confidence 55666676677888889999999988876533222110 0 1235788888777 45788888754
No 277
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=23.25 E-value=1.3e+02 Score=27.84 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=31.3
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHh-CCceEEEEEeCCCC
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKK-NSVALDIVNFGEDD 148 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKk-nnI~VdiI~fG~e~ 148 (404)
+|+|+.+|+...+..-+..+++.+++ .++.|.++.+.+..
T Consensus 3 kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~ 43 (200)
T PRK03767 3 KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETV 43 (200)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccC
Confidence 68888899865566666777888887 99999999997543
No 278
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=23.13 E-value=8.1e+02 Score=24.97 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=28.3
Q ss_pred EEEEEEcCCCCC-ChhHHHHHHHHHHhCC--ceEEEEEeCCCCCCcHHHHHHHHHH
Q 015559 109 RIIVFVGSPIKH-EKKVLEMIGRKLKKNS--VALDIVNFGEDDEGNTEKLEALLAA 161 (404)
Q Consensus 109 RIVlFvgSp~~~-d~~~l~~~ak~LKknn--I~VdiI~fG~e~~~n~~~L~~~~~~ 161 (404)
..|+++|.-... .-..+.+++.++++.+ +.+..+.+|... ..+.++.+++.
T Consensus 231 ~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~--~~~~l~~~~~~ 284 (407)
T cd04946 231 LRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGP--LEDTLKELAES 284 (407)
T ss_pred EEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCch--HHHHHHHHHHh
Confidence 345565544433 4556777777777764 455445555433 12456666653
No 279
>PRK14974 cell division protein FtsY; Provisional
Probab=23.05 E-value=5.1e+02 Score=26.64 Aligned_cols=56 Identities=25% Similarity=0.277 Sum_probs=35.4
Q ss_pred CeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 015559 107 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (404)
Q Consensus 107 ~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~v 162 (404)
+.++|+|+|-+...=.-.+.+++..|++.+.+|-+|+--.--..-.+-|+.+++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~l 194 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERL 194 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHc
Confidence 45789999977655444677899999999988877652211001123466666554
No 280
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=22.96 E-value=4e+02 Score=25.84 Aligned_cols=57 Identities=23% Similarity=0.125 Sum_probs=34.2
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCC--cHHHHHHHHHHhc
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEG--NTEKLEALLAAVN 163 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~--n~~~L~~~~~~vn 163 (404)
...+|+|+|..... +...++++++++++. ++.+-+||=|..... ....++.+++..+
T Consensus 219 ~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~ 280 (398)
T cd03800 219 DKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELG 280 (398)
T ss_pred CCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcC
Confidence 34578888876543 667888999998875 466666664443210 0123455665543
No 281
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=22.92 E-value=2.3e+02 Score=22.84 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=27.2
Q ss_pred EEEEEEcCCCC----CChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 109 RIIVFVGSPIK----HEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 109 RIVlFvgSp~~----~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
+.|+|-.+.+. .--.-|..+.+++++.++.+.++|.-..
T Consensus 44 ~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~~l~~~~~~ 86 (108)
T TIGR00377 44 RPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQLVLVSVSPR 86 (108)
T ss_pred CeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 33444444443 2456788899999999999999887543
No 282
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=22.83 E-value=4.4e+02 Score=24.51 Aligned_cols=77 Identities=23% Similarity=0.252 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE
Q 015559 90 GIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH 169 (404)
Q Consensus 90 gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Sh 169 (404)
|..+....|++-.. +..| |.|+|+. ++.+.+++++|++.-=.+.|+|+ ..- -+.+--+++++.+|.. +-+
T Consensus 33 G~dl~~~l~~~~~~--~~~~-vfllG~~----~~v~~~~~~~l~~~yP~l~i~g~-~g~-f~~~~~~~i~~~I~~s-~~d 102 (177)
T TIGR00696 33 GPDLMEELCQRAGK--EKLP-IFLYGGK----PDVLQQLKVKLIKEYPKLKIVGA-FGP-LEPEERKAALAKIARS-GAG 102 (177)
T ss_pred hHHHHHHHHHHHHH--cCCe-EEEECCC----HHHHHHHHHHHHHHCCCCEEEEE-CCC-CChHHHHHHHHHHHHc-CCC
Confidence 56666666655321 2235 5566754 78889999999998555566666 222 2223335566666653 345
Q ss_pred EEEeCCC
Q 015559 170 LVHVPPG 176 (404)
Q Consensus 170 lv~vp~g 176 (404)
+|.|-=|
T Consensus 103 il~VglG 109 (177)
T TIGR00696 103 IVFVGLG 109 (177)
T ss_pred EEEEEcC
Confidence 6555433
No 283
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=22.61 E-value=2.9e+02 Score=22.38 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=38.5
Q ss_pred cccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCC----CChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK----HEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~----~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
.+.|...+.++-.+-....... ..... +.|++=.+..+ .--..|..+.+++++.|+.+.++|.-...
T Consensus 13 ~l~G~L~f~~~~~~~~~l~~~~-~~~~~-~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~~~~v 83 (106)
T TIGR02886 13 RLSGELDHHTAERVRRKIDDAI-ERRPI-KHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNVSPAV 83 (106)
T ss_pred EEecccchhhHHHHHHHHHHHH-HhCCC-CEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 4556666666555444322211 11122 33444444443 13456778999999999999999875433
No 284
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=22.60 E-value=55 Score=25.90 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=16.7
Q ss_pred CeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015559 107 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (404)
Q Consensus 107 ~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (404)
.++||++++.+. .......++.++|...+|+|+.|.
T Consensus 46 ~~~Vii~~D~D~-~G~~~a~~i~~~l~~~gi~v~~v~ 81 (81)
T PF13662_consen 46 VKEVIIAFDNDK-AGEKAAQKIAKKLLPLGIRVTRVA 81 (81)
T ss_dssp -SEEEEEEESSH-HHHHHHHHHHHHHG----------
T ss_pred CceEEEEeCcCH-HHHHHHHHHHHHHHhhccccccCC
Confidence 457788877553 234455688888999999998873
No 285
>PRK06523 short chain dehydrogenase; Provisional
Probab=22.59 E-value=1.9e+02 Score=26.93 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=13.5
Q ss_pred HHHHHHHhCCceEEEEEeCCC
Q 015559 127 MIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 127 ~~ak~LKknnI~VdiI~fG~e 147 (404)
.+++.+...||+|.+|.-|--
T Consensus 165 ~~a~~~~~~gi~v~~i~Pg~v 185 (260)
T PRK06523 165 SLSKEVAPKGVRVNTVSPGWI 185 (260)
T ss_pred HHHHHHhhcCcEEEEEecCcc
Confidence 345555666777777777753
No 286
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=22.52 E-value=2.3e+02 Score=25.72 Aligned_cols=66 Identities=14% Similarity=0.239 Sum_probs=41.9
Q ss_pred ccccCCCcHHHHHHHHH--HHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 79 LEIGGELNLAAGIQVAQ--LALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 79 l~~~G~~sL~~gL~iA~--lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
+.+.|.++-..+-.+.. ..|.. ....++|.|++-||... -..-..+...++.-++.|.+++.|-..
T Consensus 19 i~l~g~I~~~~~~~~~~~L~~l~~---~~~~~~i~i~INSpGG~-v~~g~~i~~~i~~~~~~v~t~~~G~aa 86 (182)
T PF00574_consen 19 IFLNGPIDEESANRLISQLLYLEN---EDKNKPINIYINSPGGD-VDAGLAIYDAIRSSKAPVTTVVLGLAA 86 (182)
T ss_dssp EEEESSBSHHHHHHHHHHHHHHHH---HTSSSEEEEEEEECEBC-HHHHHHHHHHHHHSSSEEEEEEEEEEE
T ss_pred EEECCccCHHHHHHHHHHHHHHhc---cCCCceEEEEEcCCCCc-cHHHHHHHHHHHhcCCCeEEEEeCccc
Confidence 34556655444444333 34533 23567899999998643 445566777777778888888887544
No 287
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=22.49 E-value=3.3e+02 Score=23.98 Aligned_cols=63 Identities=17% Similarity=0.273 Sum_probs=35.7
Q ss_pred cCCCCCChhHHHHHHHHHHhC-CceE--EEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeC----CCCchhhhh
Q 015559 115 GSPIKHEKKVLEMIGRKLKKN-SVAL--DIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVP----PGPNALSDV 183 (404)
Q Consensus 115 gSp~~~d~~~l~~~ak~LKkn-nI~V--diI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp----~g~~lLsD~ 183 (404)
||........+..+++++++. ++.| -.+.|.+.. +...++.+-..+-.+++++| .|.|.-.|+
T Consensus 9 GSR~~~~~~~~~~la~~l~~~~~~~v~~afle~~~P~------l~~~l~~l~~~G~~~ivVvPlFL~~G~Hv~~Di 78 (125)
T cd03415 9 GSRRNTFNEDMEEWAAYLERKLGVPVYLTYNEYAEPN------WRDLLNELLSEGYGHIIIALAFLGRGNHVARDI 78 (125)
T ss_pred CCCChHHHHHHHHHHHHHHhccCCceEEEEeecCCCC------HHHHHHHHHHCCCCEEEEehhhccCCcchHHHH
Confidence 555555667788999999753 3333 333334432 45555554444556888887 244544443
No 288
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=22.37 E-value=1.5e+02 Score=30.44 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=21.4
Q ss_pred ChhHHHHHHHHHH---hCCc-eEEEEEeCCCCCCcHHHHHHHHHHhcC
Q 015559 121 EKKVLEMIGRKLK---KNSV-ALDIVNFGEDDEGNTEKLEALLAAVNN 164 (404)
Q Consensus 121 d~~~l~~~ak~LK---knnI-~VdiI~fG~e~~~n~~~L~~~~~~vn~ 164 (404)
++.++..+-+.+. ..++ .|.|+|+-.. -.+.++++++..+..
T Consensus 186 TpeDl~~l~~~~~~~~~~~~~~~~~~g~~~~--GKtt~~~~l~~~l~~ 231 (366)
T PRK14489 186 TPEDLEQLRAIPDGTTTGAPPLLGVVGYSGT--GKTTLLEKLIPELIA 231 (366)
T ss_pred CHHHHHHHhhhhhcccCCCccEEEEecCCCC--CHHHHHHHHHHHHHH
Confidence 5666655543321 1111 3444444332 356777888777753
No 289
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=22.21 E-value=3.4e+02 Score=24.71 Aligned_cols=61 Identities=18% Similarity=0.190 Sum_probs=36.5
Q ss_pred EEEEEEcCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCC
Q 015559 109 RIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (404)
Q Consensus 109 RIVlFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g 176 (404)
+|-||-+|..+. ......++++.|.++++ .+|+ |-... ++...++.+-..++-.+.++|.+
T Consensus 3 ~I~V~gss~~~~~~~~~A~~lg~~La~~g~--~lv~-Gg~~G----lM~a~a~ga~~~gg~viGVlp~~ 64 (159)
T TIGR00725 3 QIGVIGSSNKSEELYEIAYRLGKELAKKGH--ILIN-GGRTG----VMEAVSKGAREAGGLVVGILPDE 64 (159)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHCCC--EEEc-CCchh----HHHHHHHHHHHCCCeEEEECChh
Confidence 455554443211 23456788999999997 4555 54443 78888877765555555555543
No 290
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=21.71 E-value=22 Score=34.64 Aligned_cols=19 Identities=32% Similarity=0.725 Sum_probs=16.0
Q ss_pred CCCCChHHHHHHHHhhccC
Q 015559 367 VDPEDPSVKDVLTSMQNQS 385 (404)
Q Consensus 367 vdp~~~~i~~~l~~~~~~~ 385 (404)
|||.||+.+..|..+-++.
T Consensus 173 vDprdprF~eml~~kEkee 191 (217)
T PF10147_consen 173 VDPRDPRFQEMLQEKEKEE 191 (217)
T ss_pred CCCCChHHHHHHHHHHHHH
Confidence 7999999999998776553
No 291
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=21.69 E-value=1.6e+02 Score=27.23 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=29.4
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
++|+-|+|...+.=---+.+++++|+..|++|.+|-=--
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 467888887655433456799999999999999996543
No 292
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.60 E-value=2.6e+02 Score=19.39 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=24.7
Q ss_pred CCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 119 KHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 119 ~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
...++-+.++...|.+++|.|+.|..+...
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~ 38 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQSVSR 38 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEcCCC
Confidence 345778889999999999999999887533
No 293
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=21.45 E-value=34 Score=33.04 Aligned_cols=18 Identities=33% Similarity=0.756 Sum_probs=15.0
Q ss_pred CCCCChHHHHHHHHhhcc
Q 015559 367 VDPEDPSVKDVLTSMQNQ 384 (404)
Q Consensus 367 vdp~~~~i~~~l~~~~~~ 384 (404)
|||-||+.+..|.++-++
T Consensus 184 vDprd~RF~emLqqkEke 201 (225)
T KOG4848|consen 184 VDPRDPRFEEMLQQKEKE 201 (225)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 899999999999766544
No 294
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=21.44 E-value=3.5e+02 Score=27.71 Aligned_cols=51 Identities=16% Similarity=0.023 Sum_probs=35.4
Q ss_pred EEEEEEcCCCCC-ChhHHHHHHHHHHhC--------CceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 109 RIIVFVGSPIKH-EKKVLEMIGRKLKKN--------SVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 109 RIVlFvgSp~~~-d~~~l~~~ak~LKkn--------nI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
.+|+++|..... +-..+.++++.+++. +|.+.|||=|... +.|+++++..+
T Consensus 233 ~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~----~~l~~~~~~~~ 292 (415)
T cd03816 233 ALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLK----EKYLERIKELK 292 (415)
T ss_pred eEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccH----HHHHHHHHHcC
Confidence 356666654433 566788888888753 5888888887644 47888887654
No 295
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=21.40 E-value=3.3e+02 Score=27.62 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=33.4
Q ss_pred HHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 92 QVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 92 ~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
+.....|+.+ .-.+++|.+-..+.+...+.++++.++..++.+ ||++|-..
T Consensus 41 ~~v~~~L~~~-----~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~-IiaiGGGs 91 (370)
T cd08551 41 DKVIDSLKEA-----GIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDG-VIAVGGGS 91 (370)
T ss_pred HHHHHHHHHc-----CCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCE-EEEeCCch
Confidence 3444566542 123455655444557788888999998888876 88888754
No 296
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=21.27 E-value=1.8e+02 Score=30.88 Aligned_cols=58 Identities=9% Similarity=0.147 Sum_probs=37.6
Q ss_pred CChhHHHHHHHHHHhCCceEEEEEeCCCCCCcH----H---HHHHHHHHhcCCCCcEEEEeCCCCc
Q 015559 120 HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNT----E---KLEALLAAVNNNDSSHLVHVPPGPN 178 (404)
Q Consensus 120 ~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~----~---~L~~~~~~vn~~d~Shlv~vp~g~~ 178 (404)
.+..++.++.+.+++++++|.++|-|-.- .|. . -|..|..-+.-+.....|+|-+|-.
T Consensus 22 ~s~eev~~iv~~A~~~~~~v~v~G~GhS~-s~~~~~~gvvIdl~~l~~i~~id~~~~~vtV~aG~~ 86 (438)
T TIGR01678 22 TSVEEVREVLALAREQKKKVKVVGGGHSP-SDIACTDGFLIHLDKMNKVLQFDKEKKQITVEAGIR 86 (438)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEECCCCCC-CCCccCCeEEEEhhhcCCceEEcCCCCEEEEcCCCC
Confidence 46788999999999999999999998322 110 0 0122211112345567999999963
No 297
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=21.23 E-value=8.9e+02 Score=24.73 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=48.0
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE--EEEeCCCCchhhhhhhc
Q 015559 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLLS 186 (404)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Sh--lv~vp~g~~lLsD~l~s 186 (404)
.||.+| +...+..-.....|.+++-||.+.++-|.+.. ...++ ...++.+|.++.-| +|-.|--.++-.+.++.
T Consensus 43 aiI~vg-~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-s~~el-~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~ 118 (299)
T PLN02516 43 AVVIVG-SRKDSQTYVNMKRKACAEVGIKSFDVDLPENI-SEAEL-ISKVHELNANPDVHGILVQLPLPKHINEEKILN 118 (299)
T ss_pred EEEEEC-CChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHH-HHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHh
Confidence 344445 44445555667789999999999999998877 45554 45667898876544 44445433544444443
No 298
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=21.12 E-value=1.8e+02 Score=30.24 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=32.2
Q ss_pred CCCeEEEEEEc-CCCCC---ChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 105 KQQQRIIVFVG-SPIKH---EKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 105 ~~~~RIVlFvg-Sp~~~---d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
+.++||++|+. +|... -+..+..+++.|++.|..|.||+...
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 56789999986 33322 24578899999999999999998654
No 299
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=21.11 E-value=2.9e+02 Score=29.79 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCC
Q 015559 123 KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (404)
Q Consensus 123 ~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g 176 (404)
....++++.|+++||.+.||.+-.-..-..+.+.+.+.++ .++|++-.+
T Consensus 353 ~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt-----~~vvtvEE~ 401 (464)
T PRK11892 353 TYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKT-----NRLVTVEEG 401 (464)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhc-----CeEEEEeCC
Confidence 3557888999999999999999875432334444444444 357777665
No 300
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=21.10 E-value=2.1e+02 Score=20.87 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=24.2
Q ss_pred CCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 119 KHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 119 ~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
...++-+.++.+.|.+.+|.|+.|..+..
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~~~~ 38 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQNVS 38 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 45678888999999999999999986543
No 301
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.00 E-value=2.3e+02 Score=21.39 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=28.7
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
+|-.||..+...++-+.++.+.|.+.+|. +|++|+..
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~--~i~~~~s~ 38 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVH--LVSQAAND 38 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCce--EEEEeCCC
Confidence 57788888878888888888888777654 47887765
No 302
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=20.95 E-value=2.4e+02 Score=26.40 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=15.3
Q ss_pred HHHHHHHhCCceEEEEEeCC
Q 015559 127 MIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 127 ~~ak~LKknnI~VdiI~fG~ 146 (404)
.+++.+...+|+|.+|..|.
T Consensus 171 ~la~e~~~~gi~v~~v~pG~ 190 (266)
T PRK06171 171 SWAKELGKHNIRVVGVAPGI 190 (266)
T ss_pred HHHHHhhhcCeEEEEEeccc
Confidence 44566667899999999885
No 303
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.84 E-value=2.8e+02 Score=21.93 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=26.0
Q ss_pred EEcCCCCCChhHHHHHHHHHHhCCceEEEEEeC
Q 015559 113 FVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 145 (404)
Q Consensus 113 FvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG 145 (404)
+.+.....+++-+.++-..|.+++|.|+.|.-+
T Consensus 6 i~~~~~~~~~g~~~~IF~~La~~~I~vDmI~~s 38 (75)
T cd04935 6 METLGMWQQVGFLADVFAPFKKHGVSVDLVSTS 38 (75)
T ss_pred EEcCCCCCccCHHHHHHHHHHHcCCcEEEEEeC
Confidence 334445567888899999999999999999653
No 304
>PRK00170 azoreductase; Reviewed
Probab=20.80 E-value=2e+02 Score=26.12 Aligned_cols=40 Identities=8% Similarity=0.184 Sum_probs=28.8
Q ss_pred eEEEEEEcCCCCC-C--hhHHHHHHHHHHhC--CceEEEEEeCCC
Q 015559 108 QRIIVFVGSPIKH-E--KKVLEMIGRKLKKN--SVALDIVNFGED 147 (404)
Q Consensus 108 ~RIVlFvgSp~~~-d--~~~l~~~ak~LKkn--nI~VdiI~fG~e 147 (404)
+||+++.|||... . ..-+...++.|++. +..|.+|.+...
T Consensus 2 mkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~ 46 (201)
T PRK00170 2 SKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAE 46 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 4799999999753 2 22333567778887 899999988754
No 305
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=20.70 E-value=2.2e+02 Score=24.92 Aligned_cols=52 Identities=19% Similarity=0.163 Sum_probs=35.1
Q ss_pred HHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 96 LALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 96 lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
..|+.|-.+ ..-+.|+|--+|.-+.+-...-+.+.||..+|.|+=|++|=..
T Consensus 46 ~~L~~ri~~-~~i~EVIlA~~pt~EGe~Ta~yi~~~l~~~~~kvsRlA~GiP~ 97 (112)
T cd01025 46 DKLLERIAK-GQVKEVILATNPTVEGEATALYIAKLLKDFGVKVTRLAQGIPV 97 (112)
T ss_pred HHHHHHHhc-CCCcEEEEecCCCchHHHHHHHHHHHHhHcCCCeEEEEEcCCC
Confidence 344455332 2235566666666666666777888899899999999988654
No 306
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=20.70 E-value=2.9e+02 Score=28.28 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 015559 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 159 (404)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~ 159 (404)
+.+|.+..-+.+...+.+.++.++++++. -||++|-..- -+..|.+.
T Consensus 55 ~~~~~~v~~~p~~~~v~~~~~~~~~~~~D-~IIavGGGSv--iD~AK~ia 101 (375)
T cd08179 55 VEVFEGVEPDPSVETVLKGAEAMREFEPD-WIIALGGGSP--IDAAKAMW 101 (375)
T ss_pred EEEeCCCCCCcCHHHHHHHHHHHHhcCCC-EEEEeCCccH--HHHHHHHH
Confidence 45565544455667788888888888875 4777877542 23444443
No 307
>TIGR03728 glyco_access_1 glycosyltransferase, SP_1767 family. Members of this protein family are putative glycosyltransferases. Some members are found close to genes for the accessory secretory (SecA2) system, and are suggested by Partial Phylogenetic Profiling to correlate with SecA2 systems. Glycosylation, therefore, may occur in the cytosol prior to secretion.
Probab=20.64 E-value=2.5e+02 Score=28.29 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCC------------CcHHHHHHHHHHh-cCCCCcEEEEeCC
Q 015559 124 VLEMIGRKLKKNSVALDIVNFGEDDE------------GNTEKLEALLAAV-NNNDSSHLVHVPP 175 (404)
Q Consensus 124 ~l~~~ak~LKknnI~VdiI~fG~e~~------------~n~~~L~~~~~~v-n~~d~Shlv~vp~ 175 (404)
.+.++.+.+.+++. +|+=||.... .|.+.-++|-+-+ ++.+..|+|++|.
T Consensus 3 s~~ETl~~I~~~~~--Sv~RFGDGE~~li~g~~I~fQ~y~~~La~rLkeiL~~~~~~n~lVclpd 65 (265)
T TIGR03728 3 SIDETLDYIIKNNC--SVVRFGDGEIDLIAGESIGYQSYDPELAKRLKEILGNESDENLLVCLPD 65 (265)
T ss_pred CHHHHHHHHHHCCC--eEEEecCceeeeecCCCCCCCCCCHHHHHHHHHHHhcCCCCCeEEeCCc
Confidence 46678888888887 6666765432 4555656666655 6677889999886
No 308
>PRK08339 short chain dehydrogenase; Provisional
Probab=20.57 E-value=1.9e+02 Score=27.49 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=35.6
Q ss_pred CcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC--C---------hhHH----HHHHHHHHhCCceEEEEEeCCCC
Q 015559 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH--E---------KKVL----EMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~--d---------~~~l----~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
.++...+.+++.++++... ....||| +++|.... . ..-+ ..+++.+...||+|.+|.-|.-.
T Consensus 115 ~n~~~~~~~~~~~l~~m~~-~~~g~Ii-~isS~~~~~~~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~ 191 (263)
T PRK08339 115 LLLYPAVYLTRALVPAMER-KGFGRII-YSTSVAIKEPIPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIR 191 (263)
T ss_pred HHhHHHHHHHHHHHHHHHH-cCCCEEE-EEcCccccCCCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCc
Confidence 3455566667766665422 2234655 45554321 1 1112 34577778889999999999754
No 309
>KOG3572 consensus Uncharacterized conserved protein, contains DEP domain [Signal transduction mechanisms]
Probab=20.54 E-value=2.1e+02 Score=35.08 Aligned_cols=142 Identities=17% Similarity=0.221 Sum_probs=83.2
Q ss_pred EEEEEeCChhhhCCCCCCC-HHHH-HHHHHHHHHHHhccCCcCCeEEEEEecC-----CccEEEECC----C--------
Q 015559 6 TLICIDNSEWMRNGDYAPS-RFQA-QTEAANLICGAKTQLNPENTVGVMTMAG-----KGVRVLVTP----T-------- 66 (404)
Q Consensus 6 ~vIvIDnSesMrngD~~Pt-Rl~A-q~dAv~~fv~~k~~~NPesqVGLVtmag-----~~a~VLvtl----T-------- 66 (404)
++|.|-+|.=|.+=|..=. =|+. ..-.+-.++..+-+++-.-.|.||.+.. +++.-+... .
T Consensus 294 vliFIQMs~EMW~Fde~GdlyfeKaIngFLpdLF~KWKe~~chH~VsIiLfsr~~ys~~gvdd~~~~~~~~~~Dh~gr~y 373 (1701)
T KOG3572|consen 294 VLIFIQMSSEMWQFDEQGDLYFEKAINGFLPDLFLKWKEQSCHHYVSIILFSRMWYSIGGVDDAAKRFMKGACDHRGRYY 373 (1701)
T ss_pred EEeeeeechHhhcCcchhHHHHHHHHHhHHHHHHHHHHhcCCceEEEEEEEEeeecccCCchhccchhccccccccCCcH
Confidence 5778889998987554433 2332 2223444455556788888899887764 222111111 0
Q ss_pred CCH-------------HHHHHHhcCc------------------cccC------CCcHHHHHHHHHHHhh----hcCCCC
Q 015559 67 SDL-------------GKILACMHGL------------------EIGG------ELNLAAGIQVAQLALK----HRQNKK 105 (404)
Q Consensus 67 ~D~-------------~kils~L~~l------------------~~~G------~~sL~~gL~iA~lALK----hr~~k~ 105 (404)
.|+ ..++..|... .+.| .-+|...|.+|.-.|. .|.-.+
T Consensus 374 qDFyrvVVqNes~edW~d~l~tlk~ef~~~r~vlvrk~~dEg~~~~qGr~Stsa~gNfLEvVNms~n~F~~~yidrdf~r 453 (1701)
T KOG3572|consen 374 QDFYRVVVQNESYEDWADKLLTLKNEFCSKRSVLVRKKLDEGLPQVQGRVSTSADGNFLEVVNMSMNSFSMYYIDRDFER 453 (1701)
T ss_pred hhhhhhhhccccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCcccccccccccccchHHhhhhhhhhccchhhhccccc
Confidence 111 1122222110 1223 4567777888876663 232344
Q ss_pred CCeEEEEEEcCCC--CCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 106 QQQRIIVFVGSPI--KHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 106 ~~~RIVlFvgSp~--~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
..+-|||++-+-. +.|..-+.-+.++|-.++|.+|+|++|+.
T Consensus 454 Tgq~iiiVTPG~GvfeVDr~Ll~LTkqrlid~gigmDlVCLgeq 497 (1701)
T KOG3572|consen 454 TGQQIIIVTPGNGVFEVDRDLLSLTKQRLIDMGIGMDLVCLGEQ 497 (1701)
T ss_pred cceEEEEEcCCCceeeecHHHHHHhhhHhhhcccceeEEEccCC
Confidence 6666666653322 35888888899999999999999999984
No 310
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=20.44 E-value=3.7e+02 Score=27.38 Aligned_cols=49 Identities=6% Similarity=0.001 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCC
Q 015559 123 KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (404)
Q Consensus 123 ~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g 176 (404)
....++++.|++.+|.+.||.+-.-..-..+.|.+.+.++ .++|++-.+
T Consensus 214 ~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t-----~~vv~vEE~ 262 (327)
T CHL00144 214 HHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKT-----HKVLIVEEC 262 (327)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhh-----CcEEEEECC
Confidence 3567888999999999999999885433444555555444 367777654
No 311
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=20.32 E-value=3.3e+02 Score=25.62 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=29.4
Q ss_pred CCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 106 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
.+.++|+|+|... ..+.+..+++.+++.++.+.++|-|...
T Consensus 169 ~~~~~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~ 209 (335)
T cd03802 169 PKGDYLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDP 209 (335)
T ss_pred CCCCEEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCH
Confidence 4566888888663 3345555666677789999999998654
No 312
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=20.31 E-value=3.5e+02 Score=27.68 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
+.+|.+-..+.+...+.++++.++..++.+ ||++|-..
T Consensus 54 ~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~-IIaiGGGS 91 (375)
T cd08194 54 SAIFDDVVSEPTDESVEEGVKLAKEGGCDV-IIALGGGS 91 (375)
T ss_pred EEEECCCCCCcCHHHHHHHHHHHHhcCCCE-EEEeCCch
Confidence 444543333345666777777777777764 66777644
No 313
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=20.30 E-value=2.3e+02 Score=26.42 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=17.1
Q ss_pred HHHHHHHhCCceEEEEEeCCCC
Q 015559 127 MIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 127 ~~ak~LKknnI~VdiI~fG~e~ 148 (404)
.+++.+...||+|.+|..|.-.
T Consensus 171 ~la~e~~~~gi~v~~v~pG~v~ 192 (253)
T PRK08993 171 LMANEWAKHNINVNAIAPGYMA 192 (253)
T ss_pred HHHHHhhhhCeEEEEEeeCccc
Confidence 4556667789999999999855
No 314
>PF05081 DUF682: Protein of unknown function (DUF682); InterPro: IPR007773 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), P18; it is a family of uncharacterised viral proteins.
Probab=20.28 E-value=2.5e+02 Score=26.10 Aligned_cols=45 Identities=20% Similarity=0.213 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCc
Q 015559 90 GIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSV 137 (404)
Q Consensus 90 gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI 137 (404)
.+++-...++-- +...||||||-+..+...+.|..+.+.|...++
T Consensus 105 C~~~Vt~~FeLF---~~~S~IvV~vp~~~n~~~dnls~LLk~L~~~~~ 149 (152)
T PF05081_consen 105 CEEIVTYIFELF---SLQSRIVVVVPSNANWEDDNLSALLKHLLQLNI 149 (152)
T ss_pred HHHHHHHHHHHH---cccCcEEEEECCCCCchhhHHHHHHHHHHHCCc
Confidence 444444555542 367799999999888878899999999988775
No 315
>TIGR02793 nikR nickel-responsive transcriptional regulator NikR. Three members of the seed for this model, from Escherichia coli, Pseudomonas putida, and Brucella melitensis, are found associated with a nickel ABC transporter operon that acts to import nickel for use as a cofactor in urease or hydrogenase. These proteins, with characterized nickel-binding and DNA-binding domains, act as nickel-responsive transcriptional regulators. In the larger family of full-length homologs, most others both lack proximity to the nickel ABC transporter operon and form a separate clade. Several of the homologs not within the scope of this model, but rather scoring between the trusted and noise cutoffs, have been shown to bind nickel, copper, or both, and to regulate genes in response to nickel.
Probab=20.25 E-value=1.9e+02 Score=25.86 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=27.7
Q ss_pred hhCCCCCCCHHHHHHHHHHHHHHHhccCC-cCCeEEEEEe
Q 015559 16 MRNGDYAPSRFQAQTEAANLICGAKTQLN-PENTVGVMTM 54 (404)
Q Consensus 16 MrngD~~PtRl~Aq~dAv~~fv~~k~~~N-PesqVGLVtm 54 (404)
+....| +||=++..++++.++.++.... +..-+|+|++
T Consensus 19 ~~~~g~-~~RSe~ir~~ir~~l~e~~~~~~~~~~~G~i~~ 57 (129)
T TIGR02793 19 IARRGY-QNRSEAIRDLLRSGLQQEAAEQHGTACVAVLSY 57 (129)
T ss_pred HHHcCC-CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEEE
Confidence 444445 9999999999999888654333 3456898887
No 316
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=20.22 E-value=1.6e+02 Score=27.79 Aligned_cols=35 Identities=11% Similarity=0.258 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015559 106 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (404)
..-|+++|.-.. +..+..++|++|...+|.+-.|+
T Consensus 81 ~~DRVllfs~~~---~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 81 ETDRVLLFSPFS---TDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp TT-EEEEEES-S-----HHHHHHHHHHHHHT--EEEEE
T ss_pred ccceEEEEeCCC---CCHHHHHHHHHHHHCCCCEEEEE
Confidence 456888885433 46689999999999999888888
No 317
>COG0864 NikR Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription]
Probab=20.21 E-value=1.7e+02 Score=26.55 Aligned_cols=37 Identities=19% Similarity=0.053 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCCcC--CeEEEEEecCC
Q 015559 21 YAPSRFQAQTEAANLICGAKTQLNPE--NTVGVMTMAGK 57 (404)
Q Consensus 21 ~~PtRl~Aq~dAv~~fv~~k~~~NPe--sqVGLVtmag~ 57 (404)
..++|=++-++|++.++.++-..+.. ..+|+|+|.=.
T Consensus 27 g~~sRSE~IrdAir~yl~e~~~~~~~~~~~~G~i~vvy~ 65 (136)
T COG0864 27 GYSSRSELIRDALREYLEEYRWLEDIEGERAGVITVVYD 65 (136)
T ss_pred CCCcHHHHHHHHHHHHHHHhhhhccccceeEEEEEEEEc
Confidence 45899999999999999997666655 68999998643
No 318
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.19 E-value=2.4e+02 Score=21.53 Aligned_cols=22 Identities=9% Similarity=-0.031 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHhCCceEEEEE
Q 015559 122 KKVLEMIGRKLKKNSVALDIVN 143 (404)
Q Consensus 122 ~~~l~~~ak~LKknnI~VdiI~ 143 (404)
..++..+++.+|++|+++-.|.
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4568889999999998766654
No 319
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.16 E-value=9.3e+02 Score=24.53 Aligned_cols=76 Identities=17% Similarity=0.213 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE--EEEeCCCCchhhhhhhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLLS 186 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Sh--lv~vp~g~~lLsD~l~s 186 (404)
+++++.-++...+..-.....|.+++-||.+.++-|.+.. ... -+...++++|.+..-| +|-.|--+|+-.+.+++
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~e~-~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~ 111 (294)
T PRK14187 34 CLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTI-SES-SLIEKINELNNDDSVHGILVQLPVPNHIDKNLIIN 111 (294)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHH-HHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4544444444445555567799999999999999998876 343 4556668998766544 44445433543344433
No 320
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=20.13 E-value=2.6e+02 Score=22.57 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=37.2
Q ss_pred ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCC----C-------ChhHHHHHHHHHHhCC-ceEEEEEeCC
Q 015559 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK----H-------EKKVLEMIGRKLKKNS-VALDIVNFGE 146 (404)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~----~-------d~~~l~~~ak~LKknn-I~VdiI~fG~ 146 (404)
|.+...-..++.++..++.... . ...|.||+-++.. . +...+.+..+.|++.+ |+|.+-....
T Consensus 11 p~~~~~~~~~~~~~~~~~~~~~-~--~~~v~v~~~g~gv~~~~~~~~~~~~~~~~~~~~l~~l~~~g~v~i~~C~~~~ 85 (122)
T PF02635_consen 11 PYDDERAKIALRLANAAAAMGD-Y--GHDVVVFFHGDGVKLALKDQKPNPEGDPPLQELLKELKEAGGVKIYVCETCL 85 (122)
T ss_dssp TTTBSHHHHHHHHHHHHHHTTH-T--TSEEEEEE-GGGGGGGBTTCHCGGCTSHCHHHHHHHHHHTTT-EEEEEHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCC-C--CCcEEEEEEchHHHHHHhcccccccccccHHHHHHHHHhcCCcEEEEcHHHH
Confidence 4455556777888776654321 1 3345444444432 1 2456889999999997 9888765443
Done!