Query 015559
Match_columns 404
No_of_seqs 239 out of 505
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 14:43:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_W RPN10, 26S proteasome r 100.0 1.2E-78 3.9E-83 588.7 22.7 251 1-252 1-253 (268)
2 2x5n_A SPRPN10, 26S proteasome 100.0 3.2E-46 1.1E-50 343.5 22.9 189 2-192 1-189 (192)
3 1yx4_A 26S proteasome non-ATPa 99.9 2.5E-27 8.5E-32 206.0 8.7 104 208-339 23-126 (132)
4 1jey_B KU80; double-strand DNA 99.9 5.6E-21 1.9E-25 200.4 17.3 161 4-164 8-217 (565)
5 3ibs_A Conserved hypothetical 99.8 3.5E-19 1.2E-23 160.8 21.0 158 5-175 13-197 (218)
6 1atz_A VON willebrand factor; 99.7 2.4E-15 8.3E-20 133.8 17.6 157 5-175 7-169 (189)
7 1q0p_A Complement factor B; VO 99.7 1.8E-15 6E-20 136.4 16.9 161 5-176 17-205 (223)
8 1shu_X Anthrax toxin receptor 99.7 8.8E-16 3E-20 134.5 13.8 145 5-161 8-156 (182)
9 1ijb_A VON willebrand factor; 99.7 4.1E-15 1.4E-19 134.7 18.5 160 5-175 15-180 (202)
10 2xgg_A Microneme protein 2; A/ 99.6 6.2E-15 2.1E-19 130.7 15.5 137 5-148 19-163 (178)
11 1jey_A KU70; double-strand DNA 99.6 4.2E-15 1.4E-19 157.5 16.9 145 4-148 36-209 (609)
12 4hqo_A Sporozoite surface prot 99.6 7.1E-15 2.4E-19 139.3 15.9 162 5-175 20-191 (266)
13 3n2n_F Anthrax toxin receptor 99.6 3.2E-15 1.1E-19 131.3 12.1 154 5-175 9-168 (185)
14 4fx5_A VON willebrand factor t 99.6 4.6E-14 1.6E-18 145.2 21.3 147 5-163 79-234 (464)
15 1mf7_A Integrin alpha M; cell 99.6 3.4E-15 1.2E-19 133.1 10.7 159 5-175 7-174 (194)
16 4hqf_A Thrombospondin-related 99.6 2.1E-14 7.1E-19 136.4 15.8 164 5-176 23-195 (281)
17 1v7p_C Integrin alpha-2; snake 99.6 1.1E-13 3.6E-18 124.5 19.3 159 5-176 8-181 (200)
18 1n3y_A Integrin alpha-X; alpha 99.6 7.1E-15 2.4E-19 130.7 11.1 160 5-175 11-178 (198)
19 2b2x_A Integrin alpha-1; compu 99.6 1E-13 3.5E-18 126.8 19.0 135 5-148 24-165 (223)
20 2x31_A Magnesium-chelatase 60 99.5 4.9E-16 1.7E-20 137.8 0.4 149 4-162 6-164 (189)
21 1pt6_A Integrin alpha-1; cell 99.5 1.4E-13 4.8E-18 124.9 16.3 134 5-147 9-149 (213)
22 1rrk_A Complement factor B; BB 99.5 6.3E-14 2.2E-18 141.6 13.8 161 5-175 3-190 (497)
23 2odp_A Complement C2; C3/C5 co 99.5 2.5E-13 8.4E-18 138.1 13.8 163 5-176 11-199 (509)
24 3hrz_D Complement factor B; se 99.4 1.7E-12 5.8E-17 137.4 14.6 161 5-176 245-433 (741)
25 3zqk_A VON willebrand factor; 99.4 8.4E-12 2.9E-16 112.6 14.8 139 5-159 23-168 (199)
26 1mjn_A Integrin alpha-L; rossm 99.3 1.7E-11 5.9E-16 108.8 9.8 152 5-175 4-164 (179)
27 3k6s_A Integrin alpha-X; cell 99.2 3E-11 1E-15 135.9 9.1 160 5-175 132-299 (1095)
28 1yvr_A RO autoantigen, 60-kDa 98.8 7.7E-09 2.6E-13 107.7 10.0 129 5-148 370-505 (538)
29 2ww8_A RRGA, cell WALL surface 98.7 3E-08 1E-12 109.7 11.3 113 5-118 226-390 (893)
30 2nvo_A RO sixty-related protei 98.5 8.5E-07 2.9E-11 92.7 14.7 129 5-148 364-501 (535)
31 3rag_A Uncharacterized protein 98.5 1.9E-07 6.4E-12 89.4 8.8 88 5-99 136-226 (242)
32 2nut_A Protein transport prote 98.5 8.1E-07 2.8E-11 96.8 14.1 146 5-163 134-372 (769)
33 2iue_A Pactolus I-domain; memb 98.3 1.8E-05 6.3E-10 74.1 16.4 166 5-184 5-205 (212)
34 1pcx_A Protein transport prote 98.3 1E-05 3.6E-10 88.6 15.3 148 5-163 189-404 (810)
35 1m2o_A SEC23, protein transpor 98.1 1.9E-05 6.7E-10 86.0 14.1 147 5-164 123-367 (768)
36 1m2v_B SEC24, protein transpor 98.1 2.1E-05 7.1E-10 87.5 14.4 148 5-163 305-520 (926)
37 3eh2_A Protein transport prote 97.7 0.00042 1.4E-08 75.6 15.2 151 5-164 175-390 (766)
38 3eh1_A Protein transport prote 97.7 0.00063 2.2E-08 74.1 15.8 147 5-163 162-368 (751)
39 3efo_B SEC24 related gene fami 97.6 0.00039 1.3E-08 75.9 13.3 151 5-164 179-394 (770)
40 3fcs_B Integrin beta-3; beta p 97.6 0.00077 2.6E-08 72.9 14.7 160 5-177 113-337 (690)
41 2klz_A Ataxin-3; UIM, ubiquiti 97.5 1.7E-05 5.9E-10 58.2 0.3 39 291-339 5-43 (52)
42 3k6s_B Integrin beta-2; cell r 97.3 0.00036 1.2E-08 75.4 7.2 157 5-175 106-325 (687)
43 1p9c_A 26S proteasome non-ATPa 97.1 0.00012 4E-09 53.1 1.1 22 317-338 16-37 (45)
44 3vi3_B Integrin beta-1; beta p 97.1 0.014 4.9E-07 60.3 16.8 159 5-177 124-344 (454)
45 3t3p_B Integrin beta-3; integr 96.9 0.018 6.3E-07 59.7 15.4 160 5-177 113-337 (472)
46 3rag_A Uncharacterized protein 96.8 0.0032 1.1E-07 60.1 8.3 73 105-184 8-83 (242)
47 3v4v_B Integrin beta-7; cell a 96.8 0.027 9.4E-07 58.8 15.7 156 5-177 134-356 (503)
48 1q0v_A Hydrophilic protein; ha 91.5 0.17 5.9E-06 40.8 4.1 21 218-238 6-26 (81)
49 1q0v_A Hydrophilic protein; ha 91.5 0.12 4.2E-06 41.6 3.2 49 290-338 9-70 (81)
50 1yx4_A 26S proteasome non-ATPa 89.7 0.29 9.9E-06 42.7 4.2 91 209-307 28-124 (132)
51 3qhp_A Type 1 capsular polysac 85.7 5.5 0.00019 32.8 9.7 26 218-243 121-146 (166)
52 2klz_A Ataxin-3; UIM, ubiquiti 85.3 0.22 7.5E-06 36.6 0.7 19 290-308 24-42 (52)
53 2rr9_C Putative uncharacterize 84.8 0.27 9.4E-06 35.0 0.9 18 320-337 1-18 (46)
54 3a1q_C Ubiquitin interaction m 84.3 0.25 8.4E-06 35.1 0.5 19 319-337 3-21 (45)
55 3a1q_C Ubiquitin interaction m 82.7 1.3 4.5E-05 31.4 3.7 15 223-237 6-20 (45)
56 2rr9_C Putative uncharacterize 82.1 1.7 5.7E-05 31.0 4.0 15 291-305 27-41 (46)
57 2jjm_A Glycosyl transferase, g 66.5 28 0.00097 32.6 9.6 52 108-163 211-264 (394)
58 2iw1_A Lipopolysaccharide core 62.7 36 0.0012 31.2 9.4 77 106-190 194-274 (374)
59 2f9f_A First mannosyl transfer 61.7 13 0.00044 31.4 5.7 48 107-160 22-70 (177)
60 1p9c_A 26S proteasome non-ATPa 60.9 2.2 7.5E-05 30.7 0.5 19 289-307 18-36 (45)
61 3c48_A Predicted glycosyltrans 60.1 96 0.0033 29.3 12.1 59 107-169 242-309 (438)
62 2x6q_A Trehalose-synthase TRET 56.9 40 0.0014 31.9 8.8 65 107-171 230-298 (416)
63 3okp_A GDP-mannose-dependent a 52.2 62 0.0021 29.8 9.1 49 107-159 197-248 (394)
64 2d3g_P Ubiquitin interacting m 52.0 9.1 0.00031 24.4 2.2 17 225-241 5-21 (26)
65 1rzu_A Glycogen synthase 1; gl 50.5 64 0.0022 31.2 9.3 78 108-190 291-369 (485)
66 3fni_A Putative diflavin flavo 49.4 27 0.00094 29.8 5.8 42 106-147 3-44 (159)
67 2db7_A Hairy/enhancer-OF-split 49.1 13 0.00045 28.3 3.2 27 357-383 31-57 (64)
68 3d3k_A Enhancer of mRNA-decapp 48.6 51 0.0017 31.0 7.9 39 108-148 86-124 (259)
69 2a5l_A Trp repressor binding p 47.6 18 0.00063 31.0 4.4 40 108-147 6-45 (200)
70 4grd_A N5-CAIR mutase, phospho 46.4 93 0.0032 28.2 8.8 64 106-173 11-74 (173)
71 3u7r_A NADPH-dependent FMN red 46.3 42 0.0014 30.0 6.7 66 108-175 3-76 (190)
72 1jzt_A Hypothetical 27.5 kDa p 46.0 36 0.0012 31.8 6.4 56 90-147 36-96 (246)
73 1ydg_A Trp repressor binding p 45.8 22 0.00077 31.1 4.7 40 108-147 7-46 (211)
74 3hly_A Flavodoxin-like domain; 45.8 22 0.00076 30.3 4.6 41 108-148 1-41 (161)
75 1f4p_A Flavodoxin; electron tr 45.6 18 0.00061 29.7 3.8 40 108-147 1-40 (147)
76 3d3j_A Enhancer of mRNA-decapp 45.6 31 0.001 33.4 6.0 39 108-148 133-171 (306)
77 3f6r_A Flavodoxin; FMN binding 45.5 21 0.00071 29.4 4.2 40 108-147 2-41 (148)
78 3k1y_A Oxidoreductase; structu 45.1 30 0.001 30.8 5.5 44 104-147 8-59 (191)
79 3oow_A Phosphoribosylaminoimid 45.0 93 0.0032 27.9 8.6 61 109-173 7-67 (166)
80 3ors_A N5-carboxyaminoimidazol 44.7 83 0.0028 28.2 8.2 62 108-173 4-65 (163)
81 3kuu_A Phosphoribosylaminoimid 44.7 80 0.0027 28.6 8.1 61 109-173 14-74 (174)
82 1o4v_A Phosphoribosylaminoimid 43.1 1E+02 0.0035 28.1 8.7 65 105-173 11-75 (183)
83 3fro_A GLGA glycogen synthase; 42.8 54 0.0019 30.6 7.2 53 109-163 252-310 (439)
84 1xmp_A PURE, phosphoribosylami 41.7 90 0.0031 28.1 8.0 64 106-173 10-73 (170)
85 2iuy_A Avigt4, glycosyltransfe 41.6 30 0.001 31.8 5.0 51 107-163 161-211 (342)
86 2amj_A Modulator of drug activ 41.4 38 0.0013 30.2 5.5 65 104-175 9-79 (204)
87 3rg8_A Phosphoribosylaminoimid 41.3 1.1E+02 0.0039 27.1 8.5 52 109-164 4-55 (159)
88 3b6i_A Flavoprotein WRBA; flav 40.8 29 0.00099 29.7 4.6 41 108-148 2-43 (198)
89 2qzs_A Glycogen synthase; glyc 40.3 1.6E+02 0.0055 28.3 10.3 79 107-190 291-370 (485)
90 2o8n_A APOA-I binding protein; 38.9 54 0.0018 31.2 6.5 55 90-146 59-116 (265)
91 2llw_A Heat shock protein STI1 38.5 18 0.0006 28.1 2.5 13 319-331 6-18 (71)
92 2gek_A Phosphatidylinositol ma 38.0 1.2E+02 0.0041 28.0 8.7 49 109-162 209-261 (406)
93 1u11_A PURE (N5-carboxyaminoim 37.8 1E+02 0.0036 28.0 7.8 62 108-173 22-83 (182)
94 3trh_A Phosphoribosylaminoimid 37.6 87 0.003 28.2 7.2 50 109-162 8-57 (169)
95 3lp6_A Phosphoribosylaminoimid 37.3 76 0.0026 28.7 6.8 51 109-163 9-59 (174)
96 2ark_A Flavodoxin; FMN, struct 36.6 42 0.0014 29.0 4.9 41 107-147 4-45 (188)
97 2qip_A Protein of unknown func 35.6 45 0.0015 28.7 4.9 33 108-146 110-143 (165)
98 2lnd_A De novo designed protei 35.5 80 0.0028 25.6 5.9 55 105-163 49-103 (112)
99 2vzf_A NADH-dependent FMN redu 34.5 38 0.0013 29.5 4.4 40 108-147 3-45 (197)
100 8abp_A L-arabinose-binding pro 34.1 2.1E+02 0.0073 25.4 9.5 112 23-146 108-233 (306)
101 2bfw_A GLGA glycogen synthase; 34.0 2E+02 0.0068 23.8 12.2 52 109-162 37-94 (200)
102 2lta_A De novo designed protei 40.2 8.6 0.00029 31.2 0.0 48 108-163 3-50 (110)
103 3tem_A Ribosyldihydronicotinam 33.8 46 0.0016 30.4 4.9 41 107-147 1-43 (228)
104 2kln_A Probable sulphate-trans 33.1 1.3E+02 0.0044 24.2 7.2 41 108-148 48-92 (130)
105 2q62_A ARSH; alpha/beta, flavo 33.0 49 0.0017 30.7 5.0 69 105-175 32-107 (247)
106 4b4k_A N5-carboxyaminoimidazol 31.7 1.7E+02 0.0058 26.6 8.2 60 110-173 25-84 (181)
107 3gff_A IROE-like serine hydrol 31.3 3.4E+02 0.012 25.7 11.3 19 3-23 74-92 (331)
108 1ur4_A Galactanase; hydrolase, 31.1 2.5E+02 0.0084 28.1 10.1 63 83-151 84-168 (399)
109 2zki_A 199AA long hypothetical 30.5 46 0.0016 28.6 4.1 39 108-147 5-43 (199)
110 3lwa_A Secreted thiol-disulfid 29.4 2.3E+02 0.008 23.4 8.4 54 109-163 61-122 (183)
111 2fzv_A Putative arsenical resi 29.0 56 0.0019 31.2 4.8 68 106-175 57-132 (279)
112 3ced_A Methionine import ATP-b 28.7 1.1E+02 0.0038 24.3 5.9 25 121-145 74-98 (98)
113 3sc4_A Short chain dehydrogena 28.5 1.2E+02 0.0041 27.7 6.9 62 85-148 123-200 (285)
114 1ufo_A Hypothetical protein TT 28.1 2.5E+02 0.0084 23.0 8.6 48 132-179 167-218 (238)
115 2hna_A Protein MIOC, flavodoxi 27.9 67 0.0023 26.4 4.6 35 109-143 3-37 (147)
116 3rss_A Putative uncharacterize 27.8 85 0.0029 32.4 6.2 55 90-147 36-90 (502)
117 3c8f_A Pyruvate formate-lyase 27.3 79 0.0027 27.5 5.2 53 109-162 71-123 (245)
118 3hr4_A Nitric oxide synthase, 27.1 59 0.002 30.0 4.4 58 87-147 22-79 (219)
119 5nul_A Flavodoxin; electron tr 26.7 37 0.0013 27.5 2.7 39 110-148 1-39 (138)
120 3igf_A ALL4481 protein; two-do 26.2 1.7E+02 0.0056 28.9 7.8 114 7-144 127-250 (374)
121 2fz5_A Flavodoxin; alpha/beta 26.0 66 0.0023 25.5 4.1 38 110-147 2-39 (137)
122 2ki0_A DS119; beta-alpha-beta, 25.9 34 0.0012 22.9 1.8 21 121-141 13-33 (36)
123 1bvy_F Protein (cytochrome P45 25.9 43 0.0015 29.8 3.2 41 106-146 20-60 (191)
124 3e03_A Short chain dehydrogena 25.8 1.6E+02 0.0055 26.6 7.2 60 85-146 120-196 (274)
125 1t5b_A Acyl carrier protein ph 25.7 61 0.0021 27.6 4.1 40 108-147 2-46 (201)
126 2wte_A CSA3; antiviral protein 25.0 3.9E+02 0.013 24.6 9.7 75 104-180 31-107 (244)
127 4amg_A Snogd; transferase, pol 24.3 49 0.0017 31.0 3.4 50 89-144 9-58 (400)
128 4f8x_A Endo-1,4-beta-xylanase; 23.9 1.5E+02 0.005 29.0 6.8 62 83-147 151-215 (335)
129 1g91_A MPIF-1, myeloid progeni 23.2 44 0.0015 25.9 2.3 21 367-387 52-72 (77)
130 3hp4_A GDSL-esterase; psychrot 23.2 2.6E+02 0.009 22.7 7.5 69 108-178 3-77 (185)
131 1cip_A Protein (guanine nucleo 22.6 5.3E+02 0.018 24.9 10.7 99 4-118 218-326 (353)
132 2x6q_A Trehalose-synthase TRET 22.4 1E+02 0.0035 29.0 5.3 42 106-147 39-81 (416)
133 3vue_A GBSS-I, granule-bound s 22.3 1.2E+02 0.004 31.1 6.0 55 106-162 325-380 (536)
134 3oy2_A Glycosyltransferase B73 22.3 1.2E+02 0.0041 28.4 5.7 58 107-164 183-245 (413)
135 3r6w_A FMN-dependent NADH-azor 22.3 87 0.003 27.4 4.5 40 108-147 2-46 (212)
136 1o2d_A Alcohol dehydrogenase, 22.0 2.8E+02 0.0097 26.8 8.5 48 125-173 58-105 (371)
137 4g81_D Putative hexonate dehyd 21.8 63 0.0021 30.1 3.6 63 85-148 116-193 (255)
138 4fid_A G protein alpha subunit 21.8 5.5E+02 0.019 24.9 12.4 82 4-98 186-274 (340)
139 2xci_A KDO-transferase, 3-deox 21.7 2E+02 0.0067 27.4 7.2 50 109-162 197-248 (374)
140 3sho_A Transcriptional regulat 21.6 1.1E+02 0.0039 25.8 5.0 37 121-162 25-61 (187)
141 1t0i_A YLR011WP; FMN binding p 21.5 1.1E+02 0.0038 26.0 4.9 39 108-146 1-47 (191)
142 3fzy_A RTX toxin RTXA; RTXA to 21.5 2.2E+02 0.0077 26.8 7.2 45 104-148 154-200 (234)
143 3ljk_A Glucose-6-phosphate iso 21.4 2E+02 0.0069 30.2 7.6 84 89-178 153-242 (543)
144 1rcu_A Conserved hypothetical 21.2 2.2E+02 0.0074 25.7 6.9 60 109-175 24-90 (195)
145 3qjg_A Epidermin biosynthesis 21.1 80 0.0027 28.1 4.0 34 108-143 6-39 (175)
146 3lf2_A Short chain oxidoreduct 20.7 2.1E+02 0.0072 25.6 6.8 62 85-148 117-193 (265)
147 2hpv_A FMN-dependent NADH-azor 20.6 82 0.0028 27.3 3.9 38 108-145 2-45 (208)
148 3zqu_A Probable aromatic acid 20.6 1.5E+02 0.0051 27.1 5.7 35 107-143 4-38 (209)
149 1y7p_A Hypothetical protein AF 20.5 1.6E+02 0.0056 27.5 6.0 38 104-144 142-179 (223)
150 2f6i_A ATP-dependent CLP prote 20.3 1.7E+02 0.0059 26.5 6.1 62 80-146 43-106 (215)
151 3v5n_A Oxidoreductase; structu 20.3 2.7E+02 0.0094 27.1 8.1 85 65-160 93-184 (417)
152 2pd2_A Hypothetical protein ST 20.0 1.6E+02 0.0055 22.9 5.2 54 86-143 12-68 (108)
No 1
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-78 Score=588.71 Aligned_cols=251 Identities=49% Similarity=0.770 Sum_probs=190.1
Q ss_pred CCcceEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcc
Q 015559 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLE 80 (404)
Q Consensus 1 m~lEa~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~ 80 (404)
|||||||||||+|.||+++||.||||++|++|++.|++.|+++||+++||||+|+|+.+.|++|||+|+.+|+.+|+.++
T Consensus 1 m~lEAtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~D~~~il~aL~~l~ 80 (268)
T 4b4t_W 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQ 80 (268)
T ss_dssp CCCEEEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEESCHHHHHHHHTTCC
T ss_pred CCceeEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcchHHHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015559 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (404)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~ 160 (404)
++|.|+|.+||++|+++||||+++++++|||||++|+++++++++++++|++||+||+|+|||||... +|.++|++|++
T Consensus 81 ~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~-~n~~kLe~l~~ 159 (268)
T 4b4t_W 81 IEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIE-QNTELLDEFIA 159 (268)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCC-SSCCHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCc-cchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988 79999999999
Q ss_pred HhcC--CCCcEEEEeCCCCchhhhhhhcCccccCCCCCCCchhHhHHHhhhcCCCCCccCCCCCCCHHHHHHHHhcHHHH
Q 015559 161 AVNN--NDSSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEE 238 (404)
Q Consensus 161 ~vn~--~d~Shlv~vp~g~~lLsD~l~sspi~~g~~~~~~~~~~~~~~~~~~~~~~~efgvDp~~DPELa~ALr~SlEEe 238 (404)
++|+ +++||||+||||+++|||+|++|||+.|++.++.+++++++|++++++++|||||||++|||||||||||||||
T Consensus 160 ~~Ng~~~~~s~~v~v~~g~~~lsd~l~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~dpela~alr~s~eee 239 (268)
T 4b4t_W 160 AVNNPQEETSHLLTVTPGPRLLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSMEEE 239 (268)
T ss_dssp HHCSSTTTSCEEEEECCCSSCHHHHHHTSTTSCCCCC-------------------------------------------
T ss_pred HhcCCCCCceeEEEeCCCCccHHHHHhcCCccccCCccccccccccccccccCCcccccCCCCCCCHHHHHHHHHhHHHH
Confidence 9998 57999999999999999999999999998743333222333444556678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 015559 239 RARQEAAAKRAAEE 252 (404)
Q Consensus 239 ~~rq~~~~~~~~~~ 252 (404)
|+|||++++++.+.
T Consensus 240 ~~rq~~~~~~~~~~ 253 (268)
T 4b4t_W 240 QQRQERLRQQQQQQ 253 (268)
T ss_dssp --------------
T ss_pred HHHHHHHhhccccc
Confidence 99999998876544
No 2
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-46 Score=343.52 Aligned_cols=189 Identities=50% Similarity=0.808 Sum_probs=180.1
Q ss_pred CcceEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccc
Q 015559 2 VLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEI 81 (404)
Q Consensus 2 ~lEa~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~ 81 (404)
|+|++|||||+|.||+++||.||||+++++++..|+..|+++||+++||||+|+|+.+++++|||+|+.+++.+|+.+.+
T Consensus 1 ~~e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~d~~~i~~~L~~l~~ 80 (192)
T 2x5n_A 1 VLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPV 80 (192)
T ss_dssp CCEEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEESCHHHHHHHHTTCCC
T ss_pred CceEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCCCHHHHHHHHHcCCC
Confidence 68999999999999999999999999999999999999999999999999999997689999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 015559 82 GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 161 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~ 161 (404)
+|+++++.||++|+..|+|++++.+++|||||++++.+++++++.++++++|++||+|+|||||++. .|.+ |+.|+++
T Consensus 81 ~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~-~~~~-l~~la~~ 158 (192)
T 2x5n_A 81 RGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQ-NESA-LQHFIDA 158 (192)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESCC----CH-HHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCCCC-ccHH-HHHHHHh
Confidence 9999999999999999999887788999999999999888999999999999999999999999999 6878 9999999
Q ss_pred hcCCCCcEEEEeCCCCchhhhhhhcCccccC
Q 015559 162 VNNNDSSHLVHVPPGPNALSDVLLSTPIFTG 192 (404)
Q Consensus 162 vn~~d~Shlv~vp~g~~lLsD~l~sspi~~g 192 (404)
+|++++|||++||+++++|+|.|++|||+.|
T Consensus 159 ~n~~~~s~~~~~~~~~~~l~d~~~~s~~~~~ 189 (192)
T 2x5n_A 159 ANSSDSCHLVSIPPSPQLLSDLVNQSPIGQG 189 (192)
T ss_dssp HCSTTCCEEEEECCCSSCHHHHHHTSTTSCC
T ss_pred ccCCCceEEEEecCcchhHHHHHhcCccccc
Confidence 9999999999999999999999999999985
No 3
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=99.94 E-value=2.5e-27 Score=205.99 Aligned_cols=104 Identities=41% Similarity=0.540 Sum_probs=75.3
Q ss_pred hhcCCCCCccCCCCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccccccCCCCCCCcccccccc
Q 015559 208 AASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKKEKQGEQQSSSQDVTMTDQDSVPASEADDKKK 287 (404)
Q Consensus 208 ~~~~~~~~efgvDp~~DPELa~ALr~SlEEe~~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (404)
.+.|+++|+|||||++||||||||||||||||+||+++++++.+.++. .. + .++ ..
T Consensus 23 ~~~~~~~fefgvDp~~DPeLa~ALr~Smeee~~Rqe~~~~~~~e~saa----~~----~-~a~--------~~------- 78 (132)
T 1yx4_A 23 LGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAA----EA----G-IAT--------TG------- 78 (132)
T ss_dssp SCCCSSSCCSCSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----SS----S-SSC--------CC-------
T ss_pred cccCccccccCCCCCcCHHHHHHHHHhHHHHHHHHHHHHHhhcccccc----cc----c-ccc--------cC-------
Confidence 345567899999999999999999999999999999999877655431 10 0 000 00
Q ss_pred cCCCchhHHHHHHHhcCCCCCCCCCCCCCCCCCCChHHHHHHHHhcccCCCC
Q 015559 288 TTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDGTK 339 (404)
Q Consensus 288 ~~~~e~~~l~~al~mS~~~~~~~~~~~~~~~~~~ee~~ia~a~~ms~~~~~~ 339 (404)
....++++|++++.++-.... ..+ +++.|+||++|+||||||||+.+.
T Consensus 79 ~~~~eeamL~~a~~~~~~~~~---~~~-d~~~MtEEeqLa~ALqMSMQe~~~ 126 (132)
T 1yx4_A 79 TEDSDDALLKMTISQQEFGRT---GLP-DLSSMTEEEQIAYAMQMSLQGAEF 126 (132)
T ss_dssp CCSCHHHHHHHHHHHHHHHHS---SCC-CSTTSCHHHHHHHHHHHSSSSCSS
T ss_pred CcccHHHHHHHhhcccccCCC---CCC-chhhCChHHHHHHHHHhccccccc
Confidence 124677899999886632211 112 357899999999999999997653
No 4
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=99.85 E-value=5.6e-21 Score=200.40 Aligned_cols=161 Identities=16% Similarity=0.260 Sum_probs=139.5
Q ss_pred ceEEEEEeCChhhhCCCC-CCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc-------------cEEEECCCCCH
Q 015559 4 EATLICIDNSEWMRNGDY-APSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG-------------VRVLVTPTSDL 69 (404)
Q Consensus 4 Ea~vIvIDnSesMrngD~-~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~-------------a~VLvtlT~D~ 69 (404)
|++|||||+|.||.++|+ .||||+++++++..|++.|...+|.++||||+|++.. ..++.+|+...
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~l~~~~ 87 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPD 87 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCC
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeecCCCCC
Confidence 999999999999999999 8999999999999999999999999999999999863 23677777777
Q ss_pred HHHHHHhcC-cccc-CCCcHHHHHHHHHHHhhhc--CCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEE-EEEe
Q 015559 70 GKILACMHG-LEIG-GELNLAAGIQVAQLALKHR--QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALD-IVNF 144 (404)
Q Consensus 70 ~kils~L~~-l~~~-G~~sL~~gL~iA~lALKhr--~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~Vd-iI~f 144 (404)
.+++..|+. +.++ ++++|..||.+|...|+++ ..+..++|||||+++....+..++.++|+.|+++||.|+ ||||
T Consensus 88 ~~~l~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~~~~~~a~~l~~~gI~i~~vig~ 167 (565)
T 1jey_B 88 FDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPF 167 (565)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHHTTEEEEEEESS
T ss_pred HHHHHHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecc
Confidence 788899998 7766 7899999999999999997 334467899999987766667789999999999999999 9999
Q ss_pred CCCC------------------------------CCcHHHHHHHHHHhcC
Q 015559 145 GEDD------------------------------EGNTEKLEALLAAVNN 164 (404)
Q Consensus 145 G~e~------------------------------~~n~~~L~~~~~~vn~ 164 (404)
|... ..|...|+.|++.+++
T Consensus 168 g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G 217 (565)
T 1jey_B 168 SLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEG 217 (565)
T ss_dssp CCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCC
Confidence 8752 0245679999999976
No 5
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=3.5e-19 Score=160.84 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=134.7
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccc---
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEI--- 81 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~--- 81 (404)
.++||||.|.||...|+.|+||+.++.++..|+..+ |..+||||+|++. +.+++++|.|+..+...|+.+.+
T Consensus 13 ~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~----~~~~v~lv~F~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~ 87 (218)
T 3ibs_A 13 EVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDEL----DNDKVGMIVFAGD-AFTQLPITSDYISAKMFLESISPSLI 87 (218)
T ss_dssp EEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTC----SSCEEEEEEESSS-EEEEEEEESCHHHHHHHHHTCCGGGC
T ss_pred cEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhC----CCCeEEEEEECCC-ceEeCCCCCCHHHHHHHHHhcCcccC
Confidence 589999999999999999999999999999999863 5889999999987 79999999999999999999876
Q ss_pred -cCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC------------
Q 015559 82 -GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD------------ 148 (404)
Q Consensus 82 -~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~------------ 148 (404)
.|++++..||+.|...|+.+ +..++.||||+++..+.+ ++..+++.+++.+|+|++||||...
T Consensus 88 ~~g~T~l~~al~~a~~~l~~~--~~~~~~ivllTDG~~~~~--~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~ 163 (218)
T 3ibs_A 88 SKQGTAIGEAINLATRSFTPQ--EGVGRAIIVITDGENHEG--GAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDY 163 (218)
T ss_dssp CSCSCCHHHHHHHHHTTSCSC--SSCCEEEEEEECCTTCCS--CHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCB
T ss_pred CCCCCcHHHHHHHHHHHHhhC--CCCCcEEEEEcCCCCCCC--cHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCce
Confidence 68999999999999888764 456677888887765443 6889999999999999999999852
Q ss_pred -----------CCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 015559 149 -----------EGNTEKLEALLAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 149 -----------~~n~~~L~~~~~~vn~~d~Shlv~vp~ 175 (404)
..|...|+.+++.+++ +|+.+..
T Consensus 164 ~~~~~g~~~~~~~~~~~L~~iA~~~gG----~~~~~~~ 197 (218)
T 3ibs_A 164 RRDREGNVIVTRLNEGMCQEIAKDGKG----IYVRVDN 197 (218)
T ss_dssp CBCTTSCBCEECCCHHHHHHHHHHTEE----EEEEECS
T ss_pred eEcCCCCEeEecCCHHHHHHHHHhcCC----EEEECCC
Confidence 1578899999988743 4555554
No 6
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.67 E-value=2.4e-15 Score=133.83 Aligned_cols=157 Identities=13% Similarity=0.188 Sum_probs=123.3
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECC--CCCHHHHHHHhcCccc-
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTP--TSDLGKILACMHGLEI- 81 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtl--T~D~~kils~L~~l~~- 81 (404)
.++|+||.|.||. ++||+.++.++..|+..+--.....+||||+|++. +.++.++ +.|+..+..+|..+..
T Consensus 7 div~vlD~SgSm~-----~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 80 (189)
T 1atz_A 7 DVILLLDGSSSFP-----ASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSI-TTIDVPWNVVPEKAHLLSLVDVMQRE 80 (189)
T ss_dssp EEEEEEECSSSSC-----HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSS-EEEEECTTCCCCHHHHHHHHHTCCCC
T ss_pred eEEEEEeCCCCCC-----hhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCc-ceEEEecCCCCCHHHHHHHHHhCcCC
Confidence 5899999999996 48999999999999998643445689999999876 6889998 8999999999999975
Q ss_pred cCCCcHHHHHHHHHHHhhhcC---CCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015559 82 GGELNLAAGIQVAQLALKHRQ---NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~---~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~ 158 (404)
+|++++..||+.|...|.... .+..++++|||+++..+. ++...++.+++.+|.|++||+|... |.+.|+.+
T Consensus 81 ~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~---~~~~~~~~~~~~gi~v~~igvG~~~--~~~~L~~i 155 (189)
T 1atz_A 81 GGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVD---SVDAAADAARSNRVTVFPIGIGDRY--DAAQLRIL 155 (189)
T ss_dssp CCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSS---CCHHHHHHHHHTTEEEEEEEESSSS--CHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCc---hHHHHHHHHHHCCCEEEEEEcCCcC--CHHHHHHH
Confidence 789999999999998876421 122344466666654332 3678899999999999999999865 56778888
Q ss_pred HHHhcCCCCcEEEEeCC
Q 015559 159 LAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 159 ~~~vn~~d~Shlv~vp~ 175 (404)
.... ++.|+..+..
T Consensus 156 A~~~---~~~~~~~~~~ 169 (189)
T 1atz_A 156 AGPA---GDSNVVKLQR 169 (189)
T ss_dssp TGGG---GGGGCEEESS
T ss_pred HCCC---cccCEEEecC
Confidence 6433 3467777754
No 7
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.67 E-value=1.8e-15 Score=136.38 Aligned_cols=161 Identities=13% Similarity=0.166 Sum_probs=124.8
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEE----CCCCCHHHHHHHhcCcc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLV----TPTSDLGKILACMHGLE 80 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLv----tlT~D~~kils~L~~l~ 80 (404)
.+|||||.|.||.. ++|..+++++..|+..+...++..+||||+|++. +.+++ ++|.|...+..+|..+.
T Consensus 17 div~vlD~SgSM~~-----~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~ 90 (223)
T 1q0p_A 17 NIYLVLDGSDSIGA-----SNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATY-PKIWVKVSEADSSNADWVTKQLNEIN 90 (223)
T ss_dssp EEEEEEECSTTTCH-----HHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSS-EEEEECTTSGGGGCHHHHHHHHHTCC
T ss_pred eEEEEEeCCCCCch-----HHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCc-cceeeccccCCCCCHHHHHHHHHhcc
Confidence 58999999999975 4599999999999998887788899999999987 68888 66678889999999987
Q ss_pred c-----cCCCcHHHHHHHHHHHhhhcCC------CCCCeEEEEEEcCCCCC--ChhHHHHHHHH----------HHhCCc
Q 015559 81 I-----GGELNLAAGIQVAQLALKHRQN------KKQQQRIIVFVGSPIKH--EKKVLEMIGRK----------LKKNSV 137 (404)
Q Consensus 81 ~-----~G~~sL~~gL~iA~lALKhr~~------k~~~~RIVlFvgSp~~~--d~~~l~~~ak~----------LKknnI 137 (404)
+ +|.+++..||+.|...|..... +..++.||||+++..+. ++..+.+.++. +++.+|
T Consensus 91 ~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 170 (223)
T 1q0p_A 91 YEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYL 170 (223)
T ss_dssp TTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGE
T ss_pred cccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcccCCc
Confidence 4 6899999999999999875322 23455577777776654 56666666644 468899
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHHhcCCCC-cEEEEeCCC
Q 015559 138 ALDIVNFGEDDEGNTEKLEALLAAVNNNDS-SHLVHVPPG 176 (404)
Q Consensus 138 ~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~-Shlv~vp~g 176 (404)
.|++||||... +...|+.++... ++ .||..+...
T Consensus 171 ~i~~igvG~~~--~~~~L~~iA~~~---~G~~~~~~~~~~ 205 (223)
T 1q0p_A 171 DVYVFGVGPLV--NQVNINALASKK---DNEQHVFKVKDM 205 (223)
T ss_dssp EEEEEECSSCC--CHHHHHHHSCCC---TTCCCEEETTC-
T ss_pred EEEEEEecCcC--CHHHHHHHhcCC---CCCceEEEcCCH
Confidence 99999999865 456788876332 32 377777643
No 8
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.66 E-value=8.8e-16 Score=134.53 Aligned_cols=145 Identities=15% Similarity=0.187 Sum_probs=112.6
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcc---c
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLE---I 81 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~---~ 81 (404)
.++|+||.|.||...++ +|+...+.+ +..+.. |..+||||+|.+. +.++.++|.++..+...|+.+. +
T Consensus 8 dvv~vlD~SgSM~~~~~--~~~~~~~~~----~~~~~~--~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~ 78 (182)
T 1shu_X 8 DLYFVLDKSGSVANNWI--EIYNFVQQL----AERFVS--PEMRLSFIVFSSQ-ATIILPLTGDRGKISKGLEDLKRVSP 78 (182)
T ss_dssp EEEEEEECSGGGGGGHH--HHHHHHHHH----HHHCCC--TTEEEEEEEESSS-EEEEEEEECCHHHHHHHHHHHHTCCC
T ss_pred eEEEEEECCCCcccCHH--HHHHHHHHH----HHHhcC--CCceEEEEEeCCC-ceEEECCCCCHHHHHHHHHhcccCCC
Confidence 58999999999985332 354554444 444433 7899999999887 6999999999998887777654 8
Q ss_pred cCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCC-hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015559 82 GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHE-KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d-~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~ 160 (404)
+|++++..||+.|...|+.+..+..++.||+|+++..+.+ +..+...++.+++.+|.|++||||. .+...|+.+..
T Consensus 79 ~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~i~~igvg~---~~~~~L~~ia~ 155 (182)
T 1shu_X 79 VGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD---FEQAQLERIAD 155 (182)
T ss_dssp CSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECSS---CCHHHHHHHSS
T ss_pred CCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCCchhHHHHHHHHHhCCCEEEEEeCCc---CCHHHHHHHhC
Confidence 8999999999999999987543456677888888775543 3456788999999999999999994 35567877764
Q ss_pred H
Q 015559 161 A 161 (404)
Q Consensus 161 ~ 161 (404)
.
T Consensus 156 ~ 156 (182)
T 1shu_X 156 S 156 (182)
T ss_dssp S
T ss_pred C
Confidence 3
No 9
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.66 E-value=4.1e-15 Score=134.66 Aligned_cols=160 Identities=9% Similarity=0.083 Sum_probs=124.1
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcCcccc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHGLEIG 82 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT--~D~~kils~L~~l~~~ 82 (404)
.++|+||.|.||. +.+|+.+++++..|++.+.-..+..+||||+|++. +.+..+++ .+...++.+|+.+...
T Consensus 15 divfvlD~SgSm~-----~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 88 (202)
T 1ijb_A 15 DLVFLLDGSSRLS-----EAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDG-SHAYIGLKDRKRPSELRRIASQVKYA 88 (202)
T ss_dssp EEEEEEECBTTSC-----HHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSS-EEEEECTTCCCCHHHHHHHHHTCCCC
T ss_pred cEEEEEECCCCCC-----HHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCC-ceEEEecCCCCCHHHHHHHHHhCcCC
Confidence 5899999999996 46899999999999997654445789999999987 68999998 7889999999999764
Q ss_pred C--CCcHHHHHHHHHHH-hhhcCCCCCCeEEEEEEcCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015559 83 G--ELNLAAGIQVAQLA-LKHRQNKKQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (404)
Q Consensus 83 G--~~sL~~gL~iA~lA-LKhr~~k~~~~RIVlFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~ 158 (404)
| .+++..||+.|... |+....++.++.||||+++..+. ...++...++.|++.+|.|++||||... |.+.|+.|
T Consensus 89 gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~l~~~gi~i~~igvG~~~--~~~~L~~i 166 (202)
T 1ijb_A 89 GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHA--NLKQIRLI 166 (202)
T ss_dssp CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEESTTS--CHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccchHHHHHHHHHHHHCCCEEEEEecCCcC--CHHHHHHH
Confidence 4 39999999999854 44211234566678888776543 2357889999999999999999999754 56788988
Q ss_pred HHHhcCCCCcEEEEeCC
Q 015559 159 LAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 159 ~~~vn~~d~Shlv~vp~ 175 (404)
+... .+.|+..+..
T Consensus 167 A~~~---~~~~~~~~~~ 180 (202)
T 1ijb_A 167 EKQA---PENKAFVLSS 180 (202)
T ss_dssp HHHC---TTCCCEEESS
T ss_pred hCCC---CcccEEEeCC
Confidence 7543 2335555553
No 10
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.63 E-value=6.2e-15 Score=130.72 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=110.5
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC----CHHHHHHHhcCcc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS----DLGKILACMHGLE 80 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~----D~~kils~L~~l~ 80 (404)
.+||+||.|.||. +++|+.+++++..|+..+-..++..+||||+|++. +.+..+++. +...++..|..+.
T Consensus 19 divfvlD~SgSm~-----~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~-~~~~~~l~~~~~~~~~~~~~~i~~l~ 92 (178)
T 2xgg_A 19 DICFLIDSSGSIG-----IQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTD-VHLQWDLQSPNAVDKQLAAHAVLDMP 92 (178)
T ss_dssp EEEEEEECCTTTC-----HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSS-EEEEECTTSGGGSCHHHHHHHHHHCC
T ss_pred eEEEEEECCCCCC-----HHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCc-eEEEEeCCCCCccCHHHHHHHHHhCC
Confidence 5899999999995 46899999999999998644455689999999987 689999987 7789999999987
Q ss_pred -ccCCCcHHHHHHHHHHHhhhc---CCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 81 -IGGELNLAAGIQVAQLALKHR---QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 81 -~~G~~sL~~gL~iA~lALKhr---~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
.+|++++..||+.|...|... ..+..++.||||+++..+ +..++..+++.|++.+|.|++||||...
T Consensus 93 ~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~-~~~~~~~~~~~l~~~gi~v~~igvG~~~ 163 (178)
T 2xgg_A 93 YKKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESD-SDFRTVRAAKEIRELGGIVTVLAVGHYV 163 (178)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCC-HHHHHSHHHHHHHHTTCEEEEEECC---
T ss_pred CCCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCC-CCccHHHHHHHHHHCCCEEEEEEcCCcC
Confidence 689999999999999876421 113456677888776543 3456889999999999999999999876
No 11
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=99.62 E-value=4.2e-15 Score=157.49 Aligned_cols=145 Identities=14% Similarity=0.176 Sum_probs=115.8
Q ss_pred ceEEEEEeCChhhhCCC--CCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCcc---------EEEECCCCCHHHH
Q 015559 4 EATLICIDNSEWMRNGD--YAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGV---------RVLVTPTSDLGKI 72 (404)
Q Consensus 4 Ea~vIvIDnSesMrngD--~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a---------~VLvtlT~D~~ki 72 (404)
|++|||||+|.||.+.| ..||||+++++++..|++.+.-.+|...||||.|++... .++.+|+.--...
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~~~~~~~ 115 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKR 115 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCHHH
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCCCCCHHH
Confidence 78999999999999999 589999999999999999988899999999999999852 4666654221222
Q ss_pred HHHhcCc-------------cccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCCh-----hHHHHHHHHHHh
Q 015559 73 LACMHGL-------------EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEK-----KVLEMIGRKLKK 134 (404)
Q Consensus 73 ls~L~~l-------------~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~-----~~l~~~ak~LKk 134 (404)
+..|..+ ..+++++|..||.+|...|+++..+...+|||||+++...... ..+..+|+.|++
T Consensus 116 ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~a~~l~~ 195 (609)
T 1jey_A 116 ILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRD 195 (609)
T ss_dssp HHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCchHHHHHHHHHHHHHHh
Confidence 3333332 1235799999999999999986444457899999987665422 378899999999
Q ss_pred CCceEEEEEeCCCC
Q 015559 135 NSVALDIVNFGEDD 148 (404)
Q Consensus 135 nnI~VdiI~fG~e~ 148 (404)
.||.|++||+|...
T Consensus 196 ~gI~i~~igig~~~ 209 (609)
T 1jey_A 196 TGIFLDLMHLKKPG 209 (609)
T ss_dssp HTEEEEEEEBCCTT
T ss_pred cCcEEEEEecCCCC
Confidence 99999999999864
No 12
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=99.62 E-value=7.1e-15 Score=139.26 Aligned_cols=162 Identities=14% Similarity=0.126 Sum_probs=125.8
Q ss_pred eEEEEEeCChhhhCCCCCCCHH-HHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCC----HHHHHHHhcCc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRF-QAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSD----LGKILACMHGL 79 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl-~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D----~~kils~L~~l 79 (404)
.++|+||.|.||... .| ...+.++..|+..+.-.++..+||||+|++. +.++.+|+.. ...++.+|..+
T Consensus 20 DivfvlD~SgSM~~~-----~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~-~~~~~~l~~~~~~~~~~~~~~i~~l 93 (266)
T 4hqo_A 20 DLYLLVDGSGSIGYP-----NWITKVIPMLNGLINSLSLSRDTINLYMNLFGSY-TTELIRLGSGQSIDKRQALSKVTEL 93 (266)
T ss_dssp EEEEEEECSTTTCHH-----HHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSS-EEEEECTTSHHHHCHHHHHHHHHHH
T ss_pred eEEEEEECCCCcChh-----HHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCC-cceEEecCCCCccCHHHHHHHHHHh
Confidence 479999999999643 45 4678899999998766678999999999988 7999999975 67888999888
Q ss_pred ----cccCCCcHHHHHHHHHHHhhhc-CCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHH
Q 015559 80 ----EIGGELNLAAGIQVAQLALKHR-QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEK 154 (404)
Q Consensus 80 ----~~~G~~sL~~gL~iA~lALKhr-~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~ 154 (404)
.++|.+++..||+.|...|+.+ ..+..++.||||+++..+ ++.++...++.|++.+|.|++||||... +.+.
T Consensus 94 ~~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~-d~~~~~~~a~~l~~~gi~i~~iGiG~~~--~~~~ 170 (266)
T 4hqo_A 94 RKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPN-SKYRALEVANKLKQRNVRLAVIGIGQGI--NHQF 170 (266)
T ss_dssp HHHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCS-CHHHHHHHHHHHHHTTCEEEEEECSSSC--CHHH
T ss_pred hhccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCC-CchHHHHHHHHHHHCCCEEEEEecCccc--CHHH
Confidence 5789999999999998888764 223455667777766544 6788999999999999999999999865 5667
Q ss_pred HHHHHHHhcCCCCcEEEEeCC
Q 015559 155 LEALLAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 155 L~~~~~~vn~~d~Shlv~vp~ 175 (404)
|+.|.....++++.+++.+..
T Consensus 171 L~~iA~~~~~~g~~~~~~~~d 191 (266)
T 4hqo_A 171 NRLIAGCRPREPNCKFYSYAD 191 (266)
T ss_dssp HHHHHTCCTTCSSCTTEECSC
T ss_pred HHHhhCCCCCCCCCCeEEecC
Confidence 788764321122234555543
No 13
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.61 E-value=3.2e-15 Score=131.27 Aligned_cols=154 Identities=15% Similarity=0.184 Sum_probs=116.2
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcc---c
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLE---I 81 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~---~ 81 (404)
.++|+||.|.||.. + |...++++..++..+ .+|..+||||+|.+. +.++.++|.+...+..+|..+. +
T Consensus 9 div~vlD~SgSM~~-~-----~~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~-~~~~~~l~~~~~~~~~~i~~l~~~~~ 79 (185)
T 3n2n_F 9 DLYFILDKSGSVLH-H-----WNEIYYFVEQLAHKF--ISPQLRMSFIVFSTR-GTTLMKLTEDREQIRQGLEELQKVLP 79 (185)
T ss_dssp EEEEEEECSGGGGG-G-----HHHHHHHHHHHHHHC--CCTTEEEEEEEESSS-EEEEEEEECCHHHHHHHHHHHHTCCC
T ss_pred eEEEEEeCCCChhh-h-----HHHHHHHHHHHHHHh--CCCCcEEEEEEEecC-ceEEeccCCCHHHHHHHHHHHhhhcC
Confidence 48999999999985 2 455566677777766 347899999999987 6999999999999988888774 6
Q ss_pred cCCCcHHHHHHHHHHHhhh--cCCCCCCeEEEEEEcCCCCCChh-HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 015559 82 GGELNLAAGIQVAQLALKH--RQNKKQQQRIIVFVGSPIKHEKK-VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lALKh--r~~k~~~~RIVlFvgSp~~~d~~-~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~ 158 (404)
+|++++..||+.|...|.. +..+..++.||+|+++..+.+.. .+...++.+++.+|.|++|||| . .|...|+.+
T Consensus 80 ~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~igvg--~-~~~~~L~~i 156 (185)
T 3n2n_F 80 GGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVK--D-FNETQLARI 156 (185)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTEEEEEEECS--S-CCHHHHTTT
T ss_pred CCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcccchHHHHHHHHHCCCEEEEEEec--c-CCHHHHHHH
Confidence 8999999999999987743 22223455677777766543222 4578999999999999999999 3 456677776
Q ss_pred HHHhcCCCCcEEEEeCC
Q 015559 159 LAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 159 ~~~vn~~d~Shlv~vp~ 175 (404)
.. ...|+..+..
T Consensus 157 A~-----~~~~~~~~~~ 168 (185)
T 3n2n_F 157 AD-----SKDHVFPVND 168 (185)
T ss_dssp SS-----SGGGEEEHHH
T ss_pred hC-----CCCCeEEecc
Confidence 52 2356666654
No 14
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.60 E-value=4.6e-14 Score=145.22 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=122.2
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--------CCHHHHHHHh
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--------SDLGKILACM 76 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT--------~D~~kils~L 76 (404)
.++||||.|.||. +.++||+..+.++..|+.. ..|..+||||+|.+. +.++.++| .+...++.+|
T Consensus 79 dvv~VLD~SGSM~---~~~~rl~~ak~a~~~ll~~---L~~~drv~lV~Fs~~-a~~~~p~t~~l~~~~~~~~~~l~~~I 151 (464)
T 4fx5_A 79 VEVIIIDCSGSMD---YPRTKMMAAKEATKVAIDT---LTDGAFFAVVAGTEG-ARVVYPTGGQLLRADYQSRAAAKEAV 151 (464)
T ss_dssp EEEEEEECCGGGG---TTTHHHHHHHHHHHHHHHH---SCTTCEEEEEEESSS-EEEEESSSSSCEECSHHHHHHHHHHH
T ss_pred eEEEEEEcCcccC---CCCchHHHHHHHHHHHHHh---CCCCCEEEEEEEcCc-eEEEecCCcccccCCHHHHHHHHHHH
Confidence 5899999999997 4589999999999999996 458899999999987 69999987 6778899999
Q ss_pred cCccccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 015559 77 HGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKL 155 (404)
Q Consensus 77 ~~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L 155 (404)
..+.++|++++..||+.|...|+.+ +...+.||+|+++..+. ++..+....+ ..+.+|+|++||||... |...|
T Consensus 152 ~~L~~~GgT~l~~aL~~A~~~l~~~--~~~~~~IILLTDG~~~~~~~~~l~~~~~-a~~~~i~i~tiGiG~~~--d~~~L 226 (464)
T 4fx5_A 152 GRLHANGGTAMGRWLAQAGRIFDTA--PSAIKHAILLTDGKDESETPADLARAIQ-SSIGNFTADCRGIGEDW--EPKEL 226 (464)
T ss_dssp HTCCCCSCCCHHHHHHHHHHHHTTC--TTSEEEEEEEESSCCTTSCHHHHHHHHH-HHTTTCEEEEEEESSSS--CHHHH
T ss_pred HcCCCCCCCcHHHHHHHHHHHHhcC--CCCCCEEEEEcCCCCCCCChHHHHHHHH-HhcCCCeEEEEEeCCcc--CHHHH
Confidence 9999999999999999999999874 34567788888877653 4444444443 45789999999999865 56799
Q ss_pred HHHHHHhc
Q 015559 156 EALLAAVN 163 (404)
Q Consensus 156 ~~~~~~vn 163 (404)
+.+++.++
T Consensus 227 ~~IA~~tg 234 (464)
T 4fx5_A 227 RKIADALL 234 (464)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhCC
Confidence 99987763
No 15
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=99.60 E-value=3.4e-15 Score=133.15 Aligned_cols=159 Identities=14% Similarity=0.158 Sum_probs=121.7
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC--CHHHHHHHhcCccc-
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS--DLGKILACMHGLEI- 81 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~--D~~kils~L~~l~~- 81 (404)
.++|+||.|.||. +++|+.+++++..|+..+. ++..+||||+|++. +.++.+++. +...++.+|..+..
T Consensus 7 div~vlD~SgSm~-----~~~~~~~k~~~~~~~~~l~--~~~~~v~vv~f~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 78 (194)
T 1mf7_A 7 DIAFLIDGSGSII-----PHDFRRMKEFVSTVMEQLK--KSKTLFSLMQYSEE-FRIHFTFKEFQNNPNPRSLVKPITQL 78 (194)
T ss_dssp EEEEEEECCTTSC-----HHHHHHHHHHHHHHHHHHC--CTTEEEEEEEESSS-EEEEECHHHHHHSCCHHHHHTTCCCC
T ss_pred eEEEEEeCCCCCC-----HHHHHHHHHHHHHHHHhcC--CCCeEEEEEEecCC-ceEEEecCCcCCHHHHHHHHHhCcCC
Confidence 5899999999996 4589999999999999865 56789999999887 689999886 45578889999874
Q ss_pred cCCCcHHHHHHHHHHHh-hhcC--CCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCC---cHHHH
Q 015559 82 GGELNLAAGIQVAQLAL-KHRQ--NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEG---NTEKL 155 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lAL-Khr~--~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~---n~~~L 155 (404)
+|++++..||+.|...| .... .++.++.||||+++..+.++..+..+++.+++.+|.|++||||... + +.+.|
T Consensus 79 ~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~~~~~~~~~~~~gi~v~~igvG~~~-~~~~~~~~L 157 (194)
T 1mf7_A 79 LGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAF-RSEKSRQEL 157 (194)
T ss_dssp CSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEESGGG-CSHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchhhHHHHHHHHHCCCEEEEEEecccc-cccccHHHH
Confidence 89999999999999654 3211 1234566788888776645556677889999999999999999865 3 24566
Q ss_pred HHHHHHhcCCCCcEEEEeCC
Q 015559 156 EALLAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 156 ~~~~~~vn~~d~Shlv~vp~ 175 (404)
+.++.. +.+.|+..+..
T Consensus 158 ~~iA~~---~~~~~~~~~~~ 174 (194)
T 1mf7_A 158 NTIASK---PPRDHVFQVNN 174 (194)
T ss_dssp HHHSCS---SHHHHEEEESS
T ss_pred HHHhCC---CCcccEEEeCC
Confidence 666522 12357777764
No 16
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=99.59 E-value=2.1e-14 Score=136.45 Aligned_cols=164 Identities=15% Similarity=0.126 Sum_probs=123.4
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCC----HHHHHHHhcCcc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSD----LGKILACMHGLE 80 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D----~~kils~L~~l~ 80 (404)
.+||+||.|.||... +++...+.++..|+..+...+...+||||+|++. +.++.+++.+ ...++.+|..+.
T Consensus 23 div~vlD~SgSM~~~----~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~-~~~~~~l~~~~~~~~~~l~~~i~~l~ 97 (281)
T 4hqf_A 23 DLYLLMDGSGSIRRH----NWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNN-AREIIRLHSDASKNKEKALIIIKSLL 97 (281)
T ss_dssp EEEEEEECCCCSSTH----HHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETT-EEEEEEECSSCSSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCcCHH----HHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCC-ceEEEEccccCccCHHHHHHHHHHHh
Confidence 489999999999753 2348899999999998766666899999999987 6888888765 677888888775
Q ss_pred ----ccCCCcHHHHHHHHHHHhhhcCC-CCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 015559 81 ----IGGELNLAAGIQVAQLALKHRQN-KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKL 155 (404)
Q Consensus 81 ----~~G~~sL~~gL~iA~lALKhr~~-k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L 155 (404)
++|++++..||+.|...|..+.. ++.++.||||+++.. .++.++...++.|++.||.|++||||... +.+.|
T Consensus 98 ~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~-~d~~~~~~~~~~l~~~gv~i~~igiG~~~--~~~~L 174 (281)
T 4hqf_A 98 STNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIP-DSIQDSLKESRKLSDRGVKIAVFGIGQGI--NVAFN 174 (281)
T ss_dssp HTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCC-SCHHHHHHHHHHHHHTTCEEEEEEESSSC--CHHHH
T ss_pred hccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCC-CCcHHHHHHHHHHHHCCCEEEEEeCCCcc--CHHHH
Confidence 58999999999999887765422 234455666666653 36778999999999999999999999865 45677
Q ss_pred HHHHHHhcCCCCcEEEEeCCC
Q 015559 156 EALLAAVNNNDSSHLVHVPPG 176 (404)
Q Consensus 156 ~~~~~~vn~~d~Shlv~vp~g 176 (404)
+.+...-..++++|++.+..-
T Consensus 175 ~~iA~~~~~~g~~~~~~~~~~ 195 (281)
T 4hqf_A 175 RFLVGCHPSDGKCNLYADSAW 195 (281)
T ss_dssp HHHTTSCSSSSCCTTEEEECG
T ss_pred HhhhCCCCCCCCCceEEecch
Confidence 777532111111455555543
No 17
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.58 E-value=1.1e-13 Score=124.49 Aligned_cols=159 Identities=11% Similarity=0.099 Sum_probs=118.7
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcCcccc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHGLEIG 82 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT--~D~~kils~L~~l~~~ 82 (404)
.+||+||.|.||.+ |+.++.++..|+..+.-.++..+||||+|++. +.++.++| .+...++.+|..+.+.
T Consensus 8 div~vlD~SgSm~~-------~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 79 (200)
T 1v7p_C 8 DVVVVCDESNSIYP-------WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANN-PRVVFNLNTYKTKEEMIVATSQTSQY 79 (200)
T ss_dssp EEEEEEECCTTCCC-------HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSS-EEEEECTTTCSSHHHHHHHHHHCCCC
T ss_pred cEEEEEECCCCccc-------HHHHHHHHHHHHHhcCCCCCceEEEEEEECCC-ceEEEeCCCcCCHHHHHHHHHhhhcc
Confidence 58999999999973 88999999999997654567899999999987 69999998 4677899999988764
Q ss_pred -C-CCcHHHHHHHHHHH-hhhc--CCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC-----CCCCc-
Q 015559 83 -G-ELNLAAGIQVAQLA-LKHR--QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE-----DDEGN- 151 (404)
Q Consensus 83 -G-~~sL~~gL~iA~lA-LKhr--~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~-----e~~~n- 151 (404)
| .+++..||+.|... |... ..+..++.||||+++..+ +...+...++.+++.+|.|++||+|. .. ..
T Consensus 80 ~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~-~~~~~~~~~~~~~~~gi~i~~igvg~~~~~~~~-~~~ 157 (200)
T 1v7p_C 80 GGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESH-DGSMLKAVIDQCNHDNILRFGIAVLGYLNRNAL-DTK 157 (200)
T ss_dssp CCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCS-CGGGHHHHHHHHHHTTEEEEEEEECHHHHHTTC-CCH
T ss_pred CCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCC-CcccHHHHHHHHHHCCCEEEEEEeccccccccc-chh
Confidence 4 59999999999986 4321 112355667777777654 55667889999999999999999953 22 21
Q ss_pred --HHHHHHHHHHhcCCCCcEEEEeCCC
Q 015559 152 --TEKLEALLAAVNNNDSSHLVHVPPG 176 (404)
Q Consensus 152 --~~~L~~~~~~vn~~d~Shlv~vp~g 176 (404)
.+.|+.++ ..+++.|+..+...
T Consensus 158 ~~~~~L~~iA---~~~~g~~~~~~~~~ 181 (200)
T 1v7p_C 158 NLIKEIKAIA---SIPTERYFFNVSDE 181 (200)
T ss_dssp HHHHHHHHHS---CSSHHHHEEEESSS
T ss_pred hHHHHHHHHh---CCccHhcEEEcCCH
Confidence 23355554 22335676666543
No 18
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.58 E-value=7.1e-15 Score=130.66 Aligned_cols=160 Identities=12% Similarity=0.126 Sum_probs=121.2
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCC--HHHHHHHhcCcc-c
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSD--LGKILACMHGLE-I 81 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D--~~kils~L~~l~-~ 81 (404)
.++|+||.|.||... +|...++++..|+..+. ++..+||||+|++. +.+..+++.. ...++..|..+. +
T Consensus 11 div~vlD~SgSM~~~-----~~~~~~~~~~~~~~~l~--~~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~ 82 (198)
T 1n3y_A 11 DIVFLIDGSGSISSR-----NFATMMNFVRAVISQFQ--RPSTQFSLMQFSNK-FQTHFTFEEFRRSSNPLSLLASVHQL 82 (198)
T ss_dssp EEEEEEECCTTSCHH-----HHHHHHHHHHHHHTTSC--TTTEEEEEEEESSS-EEEEECHHHHHHCSSGGGGGTTCCCC
T ss_pred eEEEEEECCCCCCHH-----HHHHHHHHHHHHHHhcC--CCCcEEEEEEeCCC-ccEEEecCccCCHHHHHHHHhcCcCC
Confidence 589999999999864 45677788888888765 78999999999988 6888888642 245677777775 6
Q ss_pred cCCCcHHHHHHHHHHH-hhhcC--CCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC--CcHHHHH
Q 015559 82 GGELNLAAGIQVAQLA-LKHRQ--NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE--GNTEKLE 156 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lA-LKhr~--~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~--~n~~~L~ 156 (404)
+|.+++..||+.|... |+... .+..++.||||+++..+.++.++..+++.+++.+|.|++||||.... .+...|+
T Consensus 83 ~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~ 162 (198)
T 1n3y_A 83 QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELN 162 (198)
T ss_dssp CSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHH
T ss_pred CCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccccccccccHHHHH
Confidence 8999999999999944 44311 13355668888887766566777888999999999999999998651 1457788
Q ss_pred HHHHHhcCCCCcEEEEeCC
Q 015559 157 ALLAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 157 ~~~~~vn~~d~Shlv~vp~ 175 (404)
.++.. +++.|+..+..
T Consensus 163 ~iA~~---~~g~~~~~~~~ 178 (198)
T 1n3y_A 163 DIASK---PSQEHIFKVED 178 (198)
T ss_dssp HHSCS---SSGGGEEEESS
T ss_pred HHHcC---CCcccEEEeCC
Confidence 87633 35677666654
No 19
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.58 E-value=1e-13 Score=126.83 Aligned_cols=135 Identities=11% Similarity=0.120 Sum_probs=107.3
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcCcccc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHGLEIG 82 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT--~D~~kils~L~~l~~~ 82 (404)
.+||+||.|.||.+ |+.++.++..|+..+.-.++..+||||+|++. +.++.+++ .+...++.+|+.+...
T Consensus 24 div~vlD~SgSM~~-------~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 95 (223)
T 2b2x_A 24 DIVIVLDGSNSIYP-------WESVIAFLNDLLKRMDIGPKQTQVGIVQYGEN-VTHEFNLNKYSSTEEVLVAANKIVQR 95 (223)
T ss_dssp EEEEEEECSTTCCC-------HHHHHHHHHHHHTTSCCSTTSCCEEEEEESSS-EEEEECTTTCCSHHHHHHHHTTCCCC
T ss_pred eEEEEEECCCChhh-------HHHHHHHHHHHHHhcccCCCCeEEEEEEeCCC-ccEEEecCCCCCHHHHHHHHHhhhcc
Confidence 47999999999983 88999999999987655678999999999887 68888885 3567888999988754
Q ss_pred -C-CCcHHHHHHHHHHH-hhhc--CCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 83 -G-ELNLAAGIQVAQLA-LKHR--QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 83 -G-~~sL~~gL~iA~lA-LKhr--~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
| .+++..||+.|... |... ..+..++.||||+++..+. ..++..+++.+++.+|.|++||||...
T Consensus 96 gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~-~~~~~~~~~~~~~~gi~v~~igvG~~~ 165 (223)
T 2b2x_A 96 GGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHD-NYRLKQVIQDCEDENIQRFSIAILGHY 165 (223)
T ss_dssp CCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTT-GGGHHHHHHHHHTTTEEEEEEEECGGG
T ss_pred CCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCC-CccHHHHHHHHHHCCCEEEEEEecCcc
Confidence 4 49999999999976 4411 1233555677777766443 447889999999999999999999864
No 20
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.54 E-value=4.9e-16 Score=137.80 Aligned_cols=149 Identities=18% Similarity=0.302 Sum_probs=119.8
Q ss_pred ceEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccC
Q 015559 4 EATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGG 83 (404)
Q Consensus 4 Ea~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~~G 83 (404)
-.++||||.|.||. ++||..++.++..|+... .+|..+||||+|.+..+++++++|.+...+...|..+.++|
T Consensus 6 ~~vv~vlD~SgSM~-----~~~~~~~k~~~~~~~~~~--~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~i~~l~~~g 78 (189)
T 2x31_A 6 RVLIFAVDASGSAA-----VARLSEAKGAVELLLGRA--YAARDHVSLITFRGTAAQVLLQPSRSLTQTKRQLQGLPGGG 78 (189)
T ss_dssp CEEEEEEECCTTSC-----C--CHHHHHHHHHHHHHS--CTTTSCCCEEEESBSCCCBCTTTCSCHHHHHHHHHHCCCCB
T ss_pred eEEEEEEECCCCCC-----chHHHHHHHHHHHHHHHh--cCCCcEEEEEEECCCCceEecCCCCCHHHHHHHHhcCCCCC
Confidence 46899999999995 589999999999999764 37899999999998667999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCCh----------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHH
Q 015559 84 ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEK----------KVLEMIGRKLKKNSVALDIVNFGEDDEGNTE 153 (404)
Q Consensus 84 ~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~----------~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~ 153 (404)
++++..||+.|...|+....+..++.||||+++..+... ..+..+++.+++.+|.|++||||... ..
T Consensus 79 ~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig~g~~~---~~ 155 (189)
T 2x31_A 79 GTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDTAMRP---NP 155 (189)
T ss_dssp CCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHHHHHSS---CS
T ss_pred CCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEEecCCCC---HH
Confidence 999999999999999875444566777777776655421 23446678889999999999999753 23
Q ss_pred HHHHHHHHh
Q 015559 154 KLEALLAAV 162 (404)
Q Consensus 154 ~L~~~~~~v 162 (404)
.|+.++..+
T Consensus 156 ~L~~iA~~~ 164 (189)
T 2x31_A 156 ALVDLARTM 164 (189)
T ss_dssp SSCSTTTEE
T ss_pred HHHHHHHhc
Confidence 677776544
No 21
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.54 E-value=1.4e-13 Score=124.86 Aligned_cols=134 Identities=11% Similarity=0.127 Sum_probs=106.4
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcCcccc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHGLEIG 82 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT--~D~~kils~L~~l~~~ 82 (404)
.++|+||.|.||.+ |+.++.++..|+..+.-.++..+||||+|++. +.++.+++ .+...++..|..+.+.
T Consensus 9 div~vlD~SgSm~~-------~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 80 (213)
T 1pt6_A 9 DIVIVLDGSNSIYP-------WDSVTAFLNDLLKRMDIGPKQTQVGIVQYGEN-VTHEFNLNKYSSTEEVLVAAKKIVQR 80 (213)
T ss_dssp EEEEEEECCTTCCC-------HHHHHHHHHHHHTTSCBSTTSBEEEEEEESSS-EEEEECTTTCSSHHHHHHHHHTCCCC
T ss_pred cEEEEEECCCChhh-------HHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCC-ccEEEeccccCCHHHHHHHHHhccCC
Confidence 58999999999983 78899999999987644578999999999987 68888885 4567788899988754
Q ss_pred -C-CCcHHHHHHHHHHH-hhhc--CCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 83 -G-ELNLAAGIQVAQLA-LKHR--QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 83 -G-~~sL~~gL~iA~lA-LKhr--~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
| .+++..||+.|... |+.. ..+..++.||||+++..+.. .++...++.+++.+|.|++||||..
T Consensus 81 ~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~-~~~~~~~~~~~~~gi~i~~igig~~ 149 (213)
T 1pt6_A 81 GGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDN-HRLKKVIQDCEDENIQRFSIAILGS 149 (213)
T ss_dssp CCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCS-HHHHHHHHHHHHTTEEEEEEEECHH
T ss_pred CCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC-ccHHHHHHHHHHCCCEEEEEEeccc
Confidence 5 48999999999976 4411 11345566777877765443 4688899999999999999999974
No 22
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.52 E-value=6.3e-14 Score=141.60 Aligned_cols=161 Identities=13% Similarity=0.189 Sum_probs=121.9
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEE----CCCCCHHHHHHHhcCcc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLV----TPTSDLGKILACMHGLE 80 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLv----tlT~D~~kils~L~~l~ 80 (404)
.+||+||.|.||.. +||+.++.++..|+..+...++..+||||+|++. +.+++ ++|.|...++..|..+.
T Consensus 3 div~vlD~SgSM~~-----~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~ 76 (497)
T 1rrk_A 3 NIYLVLDGSDSIGA-----SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATY-PKIWVKVSEADSSNADWVTKQLNEIN 76 (497)
T ss_dssp EEEEEEECSTTTCH-----HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSS-EEEEECTTSGGGGCHHHHHHHHHHCC
T ss_pred eEEEEEECCCCcch-----hhHHHHHHHHHHHHHHhhccCCCceEEEEEecCC-ceEeeccccccccCHHHHHHHHHhCc
Confidence 47999999999965 8999999999999999877788899999999987 68888 77889999999999987
Q ss_pred -----ccCCCcHHHHHHHHHHHhhhcCC------CCCCeEEEEEEcCCCCC--ChhHHHHHHHHH----------HhCCc
Q 015559 81 -----IGGELNLAAGIQVAQLALKHRQN------KKQQQRIIVFVGSPIKH--EKKVLEMIGRKL----------KKNSV 137 (404)
Q Consensus 81 -----~~G~~sL~~gL~iA~lALKhr~~------k~~~~RIVlFvgSp~~~--d~~~l~~~ak~L----------KknnI 137 (404)
.+|++++..||+.|...|..+.. +..++.||||+++..+. ++....+.++.+ ++.+|
T Consensus 77 ~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 156 (497)
T 1rrk_A 77 YEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYL 156 (497)
T ss_dssp GGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGE
T ss_pred CccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHHhhhhcccccchhcCe
Confidence 45799999999999998854321 22445677777776543 343333333333 34499
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 015559 138 ALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 138 ~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~ 175 (404)
.|++||+|... +...|+.|+... ++..||..+..
T Consensus 157 ~v~~igvG~~~--~~~~L~~iA~~~--~g~~~~~~~~~ 190 (497)
T 1rrk_A 157 DVYVFGVGPLV--NQVNINALASKK--DNEQHVCKVKD 190 (497)
T ss_dssp EEEEEECSSSC--CHHHHHHHSCCC--TTCCCEEETTC
T ss_pred eEEEecCCCcc--CHHHHHHHhcCC--CCcceEEEeCC
Confidence 99999999865 456788886333 12237777764
No 23
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.47 E-value=2.5e-13 Score=138.15 Aligned_cols=163 Identities=15% Similarity=0.224 Sum_probs=124.2
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC----CHHHHHHHhcCcc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS----DLGKILACMHGLE 80 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~----D~~kils~L~~l~ 80 (404)
.+||+||.|.||.. ++|+.+++++..|++.+...++..+||||+|++. +.++.+++. |...++.+|..+.
T Consensus 11 divfvlD~SgSM~~-----~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~-~~~~~~l~~~~~~~~~~~~~~l~~l~ 84 (509)
T 2odp_A 11 NLYLLLDASQSVSE-----NDFLIFKESASLMVDRIFSFEINVSVAIITFASE-PKVLMSVLNDNSRDMTEVISSLENAN 84 (509)
T ss_dssp EEEEEEECSTTSCH-----HHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSS-EEEEECTTSGGGGCHHHHHHHHHTCC
T ss_pred eEEEEEeCCCccch-----hhHHHHHHHHHHHHHHhhccCCCceEEEEEccCC-CceeEeccCCCCCCHHHHHHHHHhcc
Confidence 48999999999974 4678999999999998876688999999999987 699999986 8999999999997
Q ss_pred cc-----CCCcHHHHHHHHHHHhhhcCC---------CCCCeEEEEEEcCCCCC--ChhHHHHHHHHH------HhCCce
Q 015559 81 IG-----GELNLAAGIQVAQLALKHRQN---------KKQQQRIIVFVGSPIKH--EKKVLEMIGRKL------KKNSVA 138 (404)
Q Consensus 81 ~~-----G~~sL~~gL~iA~lALKhr~~---------k~~~~RIVlFvgSp~~~--d~~~l~~~ak~L------KknnI~ 138 (404)
.. |++++..||+.|...|+.... +..++.||||+++..+. ++..+.+.++.+ ++.+|.
T Consensus 85 ~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 164 (509)
T 2odp_A 85 YKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLD 164 (509)
T ss_dssp GGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGEE
T ss_pred cccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhccccccCceE
Confidence 65 889999999999988854211 11345577777765543 344444444433 288999
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCC
Q 015559 139 LDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (404)
Q Consensus 139 VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g 176 (404)
|++||||... .+...|+.++... ++..|+..+...
T Consensus 165 i~~iGvG~~~-~~~~~L~~iA~~~--~G~~~~~~~~~~ 199 (509)
T 2odp_A 165 IYAIGVGKLD-VDWRELNELGSKK--DGERHAFILQDT 199 (509)
T ss_dssp EEEEEESSSC-CCHHHHHHHSCCC--TTCCCEEEESSH
T ss_pred EEEEEcCCCc-ccHHHHHhhccCC--CCceeeEEecCH
Confidence 9999999973 3677888887433 234577777654
No 24
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=99.40 E-value=1.7e-12 Score=137.41 Aligned_cols=161 Identities=12% Similarity=0.150 Sum_probs=124.0
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC----CHHHHHHHhcCcc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS----DLGKILACMHGLE 80 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~----D~~kils~L~~l~ 80 (404)
.+||+||.|.||.. ++|+.+++++..|++.+.......+||||+|++. +.+++++|. |...++.+|+.+.
T Consensus 245 div~vlD~SgSM~~-----~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~-~~~~~~l~~~~~~~~~~~~~~i~~l~ 318 (741)
T 3hrz_D 245 NIYLVLDGSGSIGA-----SDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATY-PKIWVKVSEADSSNADWVTKQLNEIN 318 (741)
T ss_dssp EEEEEEECSTTTCH-----HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSS-EEEEECTTSGGGGCHHHHHHHHTTCC
T ss_pred eEEEEeccCCcccc-----cchHHHHHHHHHHHHhhhccCCCceEEEEEeccC-CceeEeecccCCcCHHHHHHHHHhcc
Confidence 48999999999964 4588999999999999877677789999999987 699999998 8999999999997
Q ss_pred -----ccCCCcHHHHHHHHHHHhhhc-----CC-CCCCeEEEEEEcCCCCC--ChhHHHHHH----------HHHHhCCc
Q 015559 81 -----IGGELNLAAGIQVAQLALKHR-----QN-KKQQQRIIVFVGSPIKH--EKKVLEMIG----------RKLKKNSV 137 (404)
Q Consensus 81 -----~~G~~sL~~gL~iA~lALKhr-----~~-k~~~~RIVlFvgSp~~~--d~~~l~~~a----------k~LKknnI 137 (404)
.+|++++..||+.|...|... .. +..++.||||+++-.+. ++......+ +.+++.+|
T Consensus 319 ~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~~~gi 398 (741)
T 3hrz_D 319 YEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYL 398 (741)
T ss_dssp GGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGE
T ss_pred cccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhcccccccccccCe
Confidence 789999999999999888311 01 12445577888775442 444444433 36788999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHHhcCCCCc-EEEEeCCC
Q 015559 138 ALDIVNFGEDDEGNTEKLEALLAAVNNNDSS-HLVHVPPG 176 (404)
Q Consensus 138 ~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~S-hlv~vp~g 176 (404)
.|++||||... |...|+.|.... ++. |+..+..-
T Consensus 399 ~i~~igvG~~~--~~~~L~~ia~~~---~g~~~~~~~~~~ 433 (741)
T 3hrz_D 399 DVYVFGVGPLV--NQVNINALASKK---DNEQHVFKVKDM 433 (741)
T ss_dssp EEEEEECSSSC--CHHHHHHHSCCC---TTCCCEECBSSH
T ss_pred eEEEEeCCCcC--CHHHHHHHhcCC---CCcceEEEeCCH
Confidence 99999999854 566788886433 333 78777653
No 25
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=99.37 E-value=8.4e-12 Score=112.59 Aligned_cols=139 Identities=16% Similarity=0.185 Sum_probs=108.9
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC--CHHHHHHHhcCcccc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS--DLGKILACMHGLEIG 82 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~--D~~kils~L~~l~~~ 82 (404)
-++|+||.|.||. +.+|+..++++..|++.+.-..+..+||||+|++. +.+..+++. +...++.+|..+...
T Consensus 23 DivfvlD~S~Sm~-----~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 96 (199)
T 3zqk_A 23 DVAFVLEGSDKIG-----EADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYM-VTVEYPFSEAQSKGDILQRLREIRYQ 96 (199)
T ss_dssp EEEEEEECCTTTC-----HHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSS-EEEEECTTSCCCHHHHHHHHHHCCCC
T ss_pred CEEEEEECCCCCC-----HHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCc-ccEEEecCCcCCHHHHHHHHHhCcCC
Confidence 4899999999996 57899999999999998766678999999999987 699999985 888999999998654
Q ss_pred -C-CCcHHHHHHHHHHHh-hhcC--CCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHH
Q 015559 83 -G-ELNLAAGIQVAQLAL-KHRQ--NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEA 157 (404)
Q Consensus 83 -G-~~sL~~gL~iA~lAL-Khr~--~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~ 157 (404)
| .+++..||+.|...| .... .+..++.||||+++....+-.. + +.+|.|++||+|... |.+.|+.
T Consensus 97 gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~~-------~-~~~v~v~~iGiG~~~--~~~~L~~ 166 (199)
T 3zqk_A 97 GGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIKR-------L-PGDIQVVPIGVGPNA--NVQELER 166 (199)
T ss_dssp CCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCCC-------C-CTTEEEEEEEESTTC--CHHHHHH
T ss_pred CCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHHH-------H-hCCCEEEEEEcCCCC--CHHHHHH
Confidence 4 499999999998643 2111 1235567888888775443222 1 379999999999744 5678888
Q ss_pred HH
Q 015559 158 LL 159 (404)
Q Consensus 158 ~~ 159 (404)
+.
T Consensus 167 iA 168 (199)
T 3zqk_A 167 IG 168 (199)
T ss_dssp HH
T ss_pred Hh
Confidence 86
No 26
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.26 E-value=1.7e-11 Score=108.80 Aligned_cols=152 Identities=10% Similarity=0.095 Sum_probs=105.0
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHH--HHHHHhcCcc-c
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLG--KILACMHGLE-I 81 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~--kils~L~~l~-~ 81 (404)
.++|+||.|.||. +.+|+.+++++..|+..+ ..+..+||||+|++. +.+..+++.... .+...+..+. .
T Consensus 4 divfvlD~S~Sm~-----~~~~~~~k~~~~~~~~~l--~~~~~rv~vv~fs~~-~~~~~~l~~~~~~~~~~~~~~~i~~~ 75 (179)
T 1mjn_A 4 DLVFLFDGSMSLQ-----PDEFQKILDFMKDVMKKC--SNTSYQFAAVQFSTS-YKTEFDFSDYVKRKDPDALLKHVKHM 75 (179)
T ss_dssp EEEEEEECBTTCC-----HHHHHHHHHHHHHHHHHT--TTSSEEEEEEEESSS-EEEEECHHHHHHHCCHHHHHTTCCCC
T ss_pred cEEEEEeCCCCCC-----HHHHHHHHHHHHHHHHHh--CCCCeEEEEEEECCc-eeEEEcCcccCCHHHHHHHHHhcccC
Confidence 5899999999996 468999999999999986 234469999999987 688899885322 3455556553 3
Q ss_pred cCCCcHHHHHHHHHH-Hhhhc--CCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCc---HHHH
Q 015559 82 GGELNLAAGIQVAQL-ALKHR--QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGN---TEKL 155 (404)
Q Consensus 82 ~G~~sL~~gL~iA~l-ALKhr--~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n---~~~L 155 (404)
+|.|++..||+.|.. .+... ..+..++.||||+++..+.+.. + ++..+|.|++||+|... .. ...|
T Consensus 76 ~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~-~------~~~~~i~i~~igvG~~~-~~~~~~~~L 147 (179)
T 1mjn_A 76 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGN-I------DAAKDIIRYIIGIGKHF-QTKESQETL 147 (179)
T ss_dssp CBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSC-C------GGGTTSEEEEEEESGGG-CSHHHHHTT
T ss_pred CCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcc-h------HHHCCCEEEEEEccccc-cccccHHHH
Confidence 689999999999985 44421 1133556678888877654321 1 26789999999999865 22 1334
Q ss_pred HHHHHHhcCCCCcEEEEeCC
Q 015559 156 EALLAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 156 ~~~~~~vn~~d~Shlv~vp~ 175 (404)
+.++ ...++.|+..+..
T Consensus 148 ~~iA---~~~~~~~~~~~~~ 164 (179)
T 1mjn_A 148 HKFA---SKPASEFVKILDT 164 (179)
T ss_dssp GGGS---CSCHHHHEEEESS
T ss_pred HHHh---CCccHhcEEEeCC
Confidence 4443 2223357666653
No 27
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.18 E-value=3e-11 Score=135.86 Aligned_cols=160 Identities=13% Similarity=0.150 Sum_probs=124.2
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC--CHHHHHHHhcCc-cc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS--DLGKILACMHGL-EI 81 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~--D~~kils~L~~l-~~ 81 (404)
-++|+||.|.||. +.+|+.+++++..|++.+. .+..+||||+|++. +.+..+||. +...++.++..+ ..
T Consensus 132 DIvfvlD~SgSm~-----~~~f~~~k~fv~~lv~~~~--~~~~rVglV~Fs~~-~~~~~~lt~~~~~~~l~~ai~~i~~~ 203 (1095)
T 3k6s_A 132 DIVFLIDGSGSIS-----SRNFATMMNFVRAVISQFQ--RPSTQFSLMQFSNK-FQTHFTFEEFRRSSNPLSLLASVHQL 203 (1095)
T ss_dssp EEEEEEECCTTSC-----SHHHHHHHHHHHHHHHSSC--SSSEEEEEEEESSS-EEEEECSHHHHSCSCGGGGTTTCCCC
T ss_pred cEEEEEcCCCCCC-----hhHHHHHHHHHHHHHHhcc--ccccEEEEEEECCe-EEEEecCcccCCHHHHHHHHhhhhcc
Confidence 4799999999995 6889999999999999764 34589999999987 799999985 666777888887 56
Q ss_pred cCCCcHHHHHHHHHHHhhhc---CCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC--CcHHHHH
Q 015559 82 GGELNLAAGIQVAQLALKHR---QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE--GNTEKLE 156 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lALKhr---~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~--~n~~~L~ 156 (404)
+|.+++..||+.|...|... ..+..++.||||+++....|+..+...++.+++.+|.|++||+|.... .+.+.|+
T Consensus 204 gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~ 283 (1095)
T 3k6s_A 204 QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELN 283 (1095)
T ss_dssp CSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHH
T ss_pred cCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCchhHHHHHHHHHHCCCEEEEEecccccccccCHHHHH
Confidence 88999999999998755321 113345667888888776677889999999999999999999998620 1446677
Q ss_pred HHHHHhcCCCCcEEEEeCC
Q 015559 157 ALLAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 157 ~~~~~vn~~d~Shlv~vp~ 175 (404)
.++.. .++.|+..+..
T Consensus 284 ~IAs~---p~g~~vf~v~d 299 (1095)
T 3k6s_A 284 DIASK---PSQEHIFKVED 299 (1095)
T ss_dssp TTSCS---STTTSCCCBSC
T ss_pred HHHcC---CCCceEEEcCC
Confidence 76532 24447776654
No 28
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=98.83 E-value=7.7e-09 Score=107.68 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=88.0
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHH--HHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHH--HHHHHhcCcc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEA--ANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLG--KILACMHGLE 80 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dA--v~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~--kils~L~~l~ 80 (404)
.++||||.|.||..+|.. +|+.+ +++ +-.|+. ..+..+||||+|++. .+.+++|.+.. .++..|..+
T Consensus 370 ~v~lvvD~SgSM~~~~~~-~~l~~-~~~Aa~l~~~~----~~~~d~vglv~Fs~~--~~~~~~t~~~~l~~~l~~l~~~- 440 (538)
T 1yvr_A 370 RFLLAIDVSASMNQRVLG-SILNA-SVVAAAMCMLV----ARTEKDSHMVAFSDE--MLPCPITVNMLLHEVVEKMSDI- 440 (538)
T ss_dssp CEEEEEECSGGGGSBSTT-SSCBH-HHHHHHHHHHH----HHHCSSEEEEEESSS--EECCSCCTTSCHHHHHHHHTTC-
T ss_pred eEEEEEECccccCCCCCC-CcHHH-HHHHHHHHHHH----hccCCceEEEEECCC--ceEcCCCCcccHHHHHHHHhcC-
Confidence 589999999999998876 56776 443 333333 346779999999973 55667776544 444455543
Q ss_pred ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhC-C--ceEEEEEeCCCC
Q 015559 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKN-S--VALDIVNFGEDD 148 (404)
Q Consensus 81 ~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKkn-n--I~VdiI~fG~e~ 148 (404)
++|+|++..+|..|... +....+||||+++..+....++...++++++. | |++++||||...
T Consensus 441 ~~GgT~i~~aL~~a~~~------~~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~~~~v~l~~igig~~~ 505 (538)
T 1yvr_A 441 TMGSTDCALPMLWAQKT------NTAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTSNG 505 (538)
T ss_dssp CCSCCCTTHHHHHHHHT------TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEECSSSS
T ss_pred CCCCCcHHHHHHHHHhc------cCCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEEecCCC
Confidence 68999999999888643 22446788888876554333455566565543 4 556999999854
No 29
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=98.74 E-value=3e-08 Score=109.74 Aligned_cols=113 Identities=20% Similarity=0.155 Sum_probs=83.6
Q ss_pred eEEEEEeCChhhhCCCCC-CCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCcc-----EE-----------------
Q 015559 5 ATLICIDNSEWMRNGDYA-PSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGV-----RV----------------- 61 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~-PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a-----~V----------------- 61 (404)
.+|||||.|.||...++. ++||+..++++..|++.+ ..+|..+||||+|++... .|
T Consensus 226 DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L-~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n~~~~ 304 (893)
T 2ww8_A 226 DVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKI-TSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLNDSLF 304 (893)
T ss_dssp EEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHH-HTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEECCCTT
T ss_pred cEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHh-hcCCCcEEEEEEecCccccccccccccccccccccccccccc
Confidence 489999999999986543 359999999999999654 458999999999998531 11
Q ss_pred ----------------EECCCCCHHHH---HHHhcC----------ccccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 015559 62 ----------------LVTPTSDLGKI---LACMHG----------LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIV 112 (404)
Q Consensus 62 ----------------LvtlT~D~~ki---ls~L~~----------l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVl 112 (404)
.++||.|+..+ ...|.. +.+.|++++..||..|...|+.+..+..++.|||
T Consensus 305 w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~~kvIIL 384 (893)
T 2ww8_A 305 WNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQKVIFH 384 (893)
T ss_dssp SCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSSEEEEEE
T ss_pred cccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCCCeEEEE
Confidence 23677888544 477764 3457899999999999999975322345555677
Q ss_pred EEcCCC
Q 015559 113 FVGSPI 118 (404)
Q Consensus 113 FvgSp~ 118 (404)
+.++.-
T Consensus 385 LTDG~p 390 (893)
T 2ww8_A 385 ITDGVP 390 (893)
T ss_dssp EESSCC
T ss_pred EcCCCC
Confidence 766543
No 30
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=98.54 E-value=8.5e-07 Score=92.69 Aligned_cols=129 Identities=15% Similarity=0.120 Sum_probs=84.5
Q ss_pred eEEEEEeCChhhhCCCC----CCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcc
Q 015559 5 ATLICIDNSEWMRNGDY----APSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLE 80 (404)
Q Consensus 5 a~vIvIDnSesMrngD~----~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~ 80 (404)
.++||||.|.||..+.. ++++++++...+ |+... +..+||||+|++. ...+++|.+ ..++..|..+.
T Consensus 364 ~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la--~~~~r----~~d~v~lv~Fs~~--~~~~~~~~~-~~l~~~l~~l~ 434 (535)
T 2nvo_A 364 RHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMS--LIALR----TEPDALTMGFAEQ--FRPLGITPR-DTLESAMQKAQ 434 (535)
T ss_dssp EEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHH--HHHHH----HSSEEEEEEEBSS--EEECCCCTT-CCHHHHHHHTC
T ss_pred eEEEEEECCccccCCCCCCCCcccHHHHHHHHH--HHHcC----cCCceEEEEECCc--ceEcCCCcc-hhHHHHHHHHh
Confidence 47899999999987333 367777654333 23221 2448999999984 334566654 33444444432
Q ss_pred --ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhC---CceEEEEEeCCCC
Q 015559 81 --IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKN---SVALDIVNFGEDD 148 (404)
Q Consensus 81 --~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKkn---nI~VdiI~fG~e~ 148 (404)
++|+|++..+|..|. ++ +....+||||+++.......++.++++++++. +++|.+||+|...
T Consensus 435 ~~~~ggTdi~~~l~~a~---~~---~~~~~~vIliTD~~~~~g~~~~~~al~~~r~~~~~~~klv~i~l~~~~ 501 (535)
T 2nvo_A 435 SVSFGGTDCAQPILWAA---QE---RLDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLIVVGLTATE 501 (535)
T ss_dssp CSSBCCCCTTHHHHHHH---HT---TCCCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEEETTCSC
T ss_pred hCCCCCccHHHHHHHHH---Hh---cCCCCEEEEEeCCCccCCCCCHHHHHHHHHHhhCCCCeEEEEeccCCC
Confidence 378999999987653 22 23456889898876655434455666666665 8999999999754
No 31
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.53 E-value=1.9e-07 Score=89.39 Aligned_cols=88 Identities=24% Similarity=0.268 Sum_probs=76.3
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc--cEEEE-CCCCCHHHHHHHhcCccc
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG--VRVLV-TPTSDLGKILACMHGLEI 81 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~--a~VLv-tlT~D~~kils~L~~l~~ 81 (404)
.|+|+||.|.||. .||.+.+.++..++..+......++||||+|.++. +.+++ ++|.+. .+...|..+..
T Consensus 136 ~vvfLVDtSgSM~------~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~-~~~~~l~~L~a 208 (242)
T 3rag_A 136 HLVVCLDTSASMR------DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV-NVAALEAELVA 208 (242)
T ss_dssp EEEEEEECSGGGT------TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC-CHHHHHHHCCC
T ss_pred CEEEEEECcccHH------HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH-HHHHHHhhCCC
Confidence 5899999999996 27999999999999987656679999999999974 45554 999998 77788888889
Q ss_pred cCCCcHHHHHHHHHHHhh
Q 015559 82 GGELNLAAGIQVAQLALK 99 (404)
Q Consensus 82 ~G~~sL~~gL~iA~lALK 99 (404)
+|.|.++.||..|...|+
T Consensus 209 gG~Tplg~AL~~A~~~~~ 226 (242)
T 3rag_A 209 RGGTPTGPAIDHAADLLL 226 (242)
T ss_dssp CSCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 999999999999998773
No 32
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=98.51 E-value=8.1e-07 Score=96.84 Aligned_cols=146 Identities=16% Similarity=0.181 Sum_probs=106.0
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEEC--------------------
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVT-------------------- 64 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvt-------------------- 64 (404)
+.++|||+|.+.. ++++.++++..++.. ..|..+||||||.+. +.+.--
T Consensus 134 ~~vFvIDvS~~a~-------~l~~l~~si~~~L~~---Lp~~~~VGlITf~~~-v~~y~l~~~~~~~~~vf~G~k~~~~~ 202 (769)
T 2nut_A 134 IFLYVVDTCMEDE-------DLQALKESMQMSLSL---LPPTALVGLITFGRM-VQVHELGCEGISKSYVFRGTKDLSAK 202 (769)
T ss_dssp EEEEEEECCSCHH-------HHHHHHHHHHHHHTT---SCTTCEEEEEEESSE-EEEEESSCCSSCEEEEEETTSCCCSH
T ss_pred EEEEEEECCccHH-------HHHHHHHHHHHHHHh---CCCCceEEEEEeCCE-EEEEeCCCCCCccceeecCCccccHH
Confidence 5789999998754 689999999888874 677899999999865 344210
Q ss_pred -------CC-----------CC----------------HHHHHHHhcCccc---------cCCCcHHHHHHHHHHHhhhc
Q 015559 65 -------PT-----------SD----------------LGKILACMHGLEI---------GGELNLAAGIQVAQLALKHR 101 (404)
Q Consensus 65 -------lT-----------~D----------------~~kils~L~~l~~---------~G~~sL~~gL~iA~lALKhr 101 (404)
++ .+ ...|...|+.|.. .+...++.||++|..+|+..
T Consensus 203 q~~~ml~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~ 282 (769)
T 2nut_A 203 QLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECT 282 (769)
T ss_dssp HHHHHHC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhc
Confidence 10 11 1123344455533 45789999999999999964
Q ss_pred CCCCCCeEEEEEEcCCCCCChhH------------------------------HHHHHHHHHhCCceEEEEEeCCCCCCc
Q 015559 102 QNKKQQQRIIVFVGSPIKHEKKV------------------------------LEMIGRKLKKNSVALDIVNFGEDDEGN 151 (404)
Q Consensus 102 ~~k~~~~RIVlFvgSp~~~d~~~------------------------------l~~~ak~LKknnI~VdiI~fG~e~~~n 151 (404)
.++...||++|++++-+..++. -.++|+++.+++|.||+..|+... -.
T Consensus 283 -~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~-vd 360 (769)
T 2nut_A 283 -FPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQ-TG 360 (769)
T ss_dssp -SCSSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSC-CC
T ss_pred -ccCCCcEEEEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCc-cC
Confidence 2356789999999876422211 245899999999999999999876 56
Q ss_pred HHHHHHHHHHhc
Q 015559 152 TEKLEALLAAVN 163 (404)
Q Consensus 152 ~~~L~~~~~~vn 163 (404)
..-|+.+++.++
T Consensus 361 la~l~~l~~~TG 372 (769)
T 2nut_A 361 LLEMKCCPNLTG 372 (769)
T ss_dssp HHHHTHHHHHSS
T ss_pred hHHHHHHhhcCC
Confidence 778899998774
No 33
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=98.31 E-value=1.8e-05 Score=74.14 Aligned_cols=166 Identities=10% Similarity=0.133 Sum_probs=112.5
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCC
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGE 84 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~~l~~~G~ 84 (404)
-+|+|+|.|.||..- ++..+..+..+++..-..+...++|+++|.+++.....++|.|...+...+.++.+.|+
T Consensus 5 Dl~fl~D~S~SM~~d------i~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~~~l~lT~d~~~F~~~v~~~~vsg~ 78 (212)
T 2iue_A 5 DLYFLMGLSGSAQGH------LSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQHILKLTADSSQFQRELRKQLVSGK 78 (212)
T ss_dssp EEEEEEECCGGGTTT------HHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEEEEEEEESCHHHHHHHHHTCCCCCC
T ss_pred EEEEEEeCCCcchhH------HHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcceecCCcCCCHHHHHHHHhhccccCC
Confidence 479999999999865 88888888888888766667899999999999877789999999999999999988764
Q ss_pred C----cHHHHHHHHHHHhhhcCCCCCCeEEEEEE-cCCC-C----------------C-------------ChhHHHHHH
Q 015559 85 L----NLAAGIQVAQLALKHRQNKKQQQRIIVFV-GSPI-K----------------H-------------EKKVLEMIG 129 (404)
Q Consensus 85 ~----sL~~gL~iA~lALKhr~~k~~~~RIVlFv-gSp~-~----------------~-------------d~~~l~~~a 129 (404)
- .-..||..|........-++ ..|+|||+ +.+. . | |-..+.++.
T Consensus 79 ~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~chl~~g~y~~s~~~Dyps~~q~~ 157 (212)
T 2iue_A 79 LATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLA 157 (212)
T ss_dssp SSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSSBBGGGGSSCCCCHHHHH
T ss_pred CCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCccccCCccccccccCCccccccCCCeeccCcccCCCCHHHHH
Confidence 2 22334544443222111123 66777776 2222 1 1 113678899
Q ss_pred HHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCCchhhhhh
Q 015559 130 RKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 184 (404)
Q Consensus 130 k~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~~lLsD~l 184 (404)
++|+++||.+...-= . ......+.|.+.+ .++....+......+-+.|
T Consensus 158 ~~l~~~~i~~ifavt---~-~~~~~Y~~l~~~i---~~s~v~~L~~dSsni~~li 205 (212)
T 2iue_A 158 SKLAENNIQPIFVVP---S-RMVKTYEKLTTFI---PKLTIGELSDDSSNVAQLI 205 (212)
T ss_dssp HHHHHHTCEEEEEEE---H-HHHHHHHHHHHHS---TTCEEEEESSCCHHHHHHH
T ss_pred HHHHhcCCcEEEEEc---c-chhHHHHHHHHHc---ccceeeeecCCcHHHHHHH
Confidence 999999987644322 1 2234677777766 4666666665543333333
No 34
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=98.25 E-value=1e-05 Score=88.61 Aligned_cols=148 Identities=11% Similarity=0.083 Sum_probs=103.4
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEE----------------------
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVL---------------------- 62 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VL---------------------- 62 (404)
+.++|||+|.++.+.. .+++.++++...+...-..+|..+||||||... ..+.
T Consensus 189 ~yvFvIDvs~~av~~g----~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~-V~~~~l~~~~~g~k~~~~q~~mlvv~ 263 (810)
T 1pcx_A 189 TYCFLIDVSQSSIKSG----LLATTINTLLQNLDSIPNHDERTRISILCVDNA-IHYFKIPLDSENNEESADQINMMDIA 263 (810)
T ss_dssp EEEEEEECSHHHHHHT----HHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSS-EEEEECCCGGGC-------CEEECCC
T ss_pred EEEEEEECChHHHhhh----HHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE-EEEEecCccccCccccccchhhcccc
Confidence 5799999998874311 467777777776664433345689999999754 3443
Q ss_pred --------------ECCCCCHHHHHHHhcCcc------ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCCh
Q 015559 63 --------------VTPTSDLGKILACMHGLE------IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEK 122 (404)
Q Consensus 63 --------------vtlT~D~~kils~L~~l~------~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~ 122 (404)
+++......|...|+.|. -.+...++.||++|..+|++ ...||++|++|+-+..+
T Consensus 264 dl~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~-----~GGrI~~F~sg~pt~Gp 338 (810)
T 1pcx_A 264 DLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG-----VGGKIIVVSGTLPNLGI 338 (810)
T ss_dssp CTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTT-----TCEEEEEEESSCCCSST
T ss_pred ccccccCCCcccccccHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHh-----cCCEEEEEecCCCCCCC
Confidence 111222233444444442 24689999999999999986 45799999998754221
Q ss_pred h--------------------------HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 123 K--------------------------VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 123 ~--------------------------~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
+ --.++|+++.+++|.||+..++... -...-|..+++.++
T Consensus 339 G~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~-~dla~l~~l~~~TG 404 (810)
T 1pcx_A 339 GKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDY-MDVASLSNLSRFTA 404 (810)
T ss_dssp TCCCC--------------------CCHHHHHHHHHHHTTEEEEEEEEESSC-CCHHHHHHHHHTTT
T ss_pred CcccccccccccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCc-cChHHHHHHHhcCC
Confidence 1 1257899999999999999999876 56778888987773
No 35
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=98.13 E-value=1.9e-05 Score=85.97 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=105.0
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEE---------------------
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLV--------------------- 63 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLv--------------------- 63 (404)
+.++|||+|.... .+++.++++...++. .+|..+||||||... ..+.-
T Consensus 123 ~~vFvIDvs~~~~-------~l~~l~~sl~~~L~~---Lp~~~~VGlITf~~~-V~~y~l~~~~~~~~~V~~g~k~~~~~ 191 (768)
T 1m2o_A 123 IFFFVVDLTSETE-------NLDSLKESIITSLSL---LPPNALIGLITYGNV-VQLHDLSSETIDRCNVFRGDREYQLE 191 (768)
T ss_dssp EEEEEEECCSCHH-------HHHHHHHHHHHHHHT---SCTTCEEEEEEESSE-EEECCCSSSSSEEEEEEETTSCCCHH
T ss_pred EEEEEEECCcCHH-------HHHHHHHHHHHHHHh---CCCCCEEEEEEECCE-EEEEECCCCCCcceeeecCCccccHH
Confidence 5789999998875 488888888888874 677889999999753 23320
Q ss_pred -------CCCC----C---------------------------HHHHHHHhcCccc---------cCCCcHHHHHHHHHH
Q 015559 64 -------TPTS----D---------------------------LGKILACMHGLEI---------GGELNLAAGIQVAQL 96 (404)
Q Consensus 64 -------tlT~----D---------------------------~~kils~L~~l~~---------~G~~sL~~gL~iA~l 96 (404)
.++. + ...|...|+.|.. .....++.||++|..
T Consensus 192 q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ 271 (768)
T 1m2o_A 192 ALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASL 271 (768)
T ss_dssp HHHHHHHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHH
Confidence 0100 1 0123344555532 245789999999999
Q ss_pred HhhhcCCCCCCeEEEEEEcCCCCCChh---------------H---------------HHHHHHHHHhCCceEEEEEeCC
Q 015559 97 ALKHRQNKKQQQRIIVFVGSPIKHEKK---------------V---------------LEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 97 ALKhr~~k~~~~RIVlFvgSp~~~d~~---------------~---------------l~~~ak~LKknnI~VdiI~fG~ 146 (404)
.|+.. .++..-||++|++|+-+..++ + -.++|+++.+++|.||+..++.
T Consensus 272 ll~~~-~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~ 350 (768)
T 1m2o_A 272 LLQGC-YKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCY 350 (768)
T ss_dssp HHHHH-CTTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred HHhhc-cCCCCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccC
Confidence 99964 245678999999987642111 1 1467999999999999999998
Q ss_pred CCCCcHHHHHHHHHHhcC
Q 015559 147 DDEGNTEKLEALLAAVNN 164 (404)
Q Consensus 147 e~~~n~~~L~~~~~~vn~ 164 (404)
.. --..-|..+++.++|
T Consensus 351 ~~-~dla~l~~l~~~TGG 367 (768)
T 1m2o_A 351 DQ-IGMSEMKQLTDSTGG 367 (768)
T ss_dssp SC-CSHHHHHHHHHHHTC
T ss_pred Cc-cChHHHhhHhhcCCc
Confidence 76 567889999988843
No 36
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=98.13 E-value=2.1e-05 Score=87.50 Aligned_cols=148 Identities=11% Similarity=0.083 Sum_probs=103.1
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEE----------------------
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVL---------------------- 62 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VL---------------------- 62 (404)
+.++|||+|....+.. .+++.++++...+...-..+|..+||||||... ..+.
T Consensus 305 vyvFvIDvS~~av~~g----~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~-Vh~y~l~~~~~g~k~~~~q~qmlvvs 379 (926)
T 1m2v_B 305 TYCFLIDVSQSSIKSG----LLATTINTLLQNLDSIPNHDERTRISILCVDNA-IHYFKIPLDSENNEESADQINMMDIA 379 (926)
T ss_dssp BEEEEEECSHHHHHSC----HHHHHHHHHHHTTTTSCCTTSCCEECEEEESSS-EEEEECCCC---------CCEEEEEC
T ss_pred EEEEEEECCHHHHhhh----HHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE-EEEEecCCcccCCcccccchhhcccc
Confidence 5799999998864321 466777777766654333334689999999754 3332
Q ss_pred --------------ECCCCCHHHHHHHhcCcc------ccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCCh
Q 015559 63 --------------VTPTSDLGKILACMHGLE------IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEK 122 (404)
Q Consensus 63 --------------vtlT~D~~kils~L~~l~------~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~ 122 (404)
+++......|...|+.|. -.....++.||++|..+|++ ..-||++|++|+-+..+
T Consensus 380 dl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~-----~GGrI~~F~sg~Pt~Gp 454 (926)
T 1m2v_B 380 DLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG-----VGGKIIVVSGTLPNLGI 454 (926)
T ss_dssp CCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTT-----TCEEEEEEESSCCCSST
T ss_pred ccccccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHh-----hCCEEEEEecCCCCCCC
Confidence 122223344445555542 24678999999999999986 45699999998854211
Q ss_pred h-----------------H---------HHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 123 K-----------------V---------LEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 123 ~-----------------~---------l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
+ . -.++|+++.+++|.||+..++... -...-|..+++.++
T Consensus 455 G~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~-vdla~l~~l~~~TG 520 (926)
T 1m2v_B 455 GKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDY-MDVASLSNLSRFTA 520 (926)
T ss_dssp TCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSC-CCHHHHHHHHHTTT
T ss_pred CcccccccccccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCC-cChHHHHHHHhcCC
Confidence 1 1 257899999999999999999876 56778888887763
No 37
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=97.71 E-value=0.00042 Score=75.59 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=102.2
Q ss_pred eEEEEEeCChhh-hCCCCCCCHHHHHHHHHHHHHHHhcc----CCcCCeEEEEEecCCc-----------cE--------
Q 015559 5 ATLICIDNSEWM-RNGDYAPSRFQAQTEAANLICGAKTQ----LNPENTVGVMTMAGKG-----------VR-------- 60 (404)
Q Consensus 5 a~vIvIDnSesM-rngD~~PtRl~Aq~dAv~~fv~~k~~----~NPesqVGLVtmag~~-----------a~-------- 60 (404)
+.++|||+|..- .+|. +++.++++...+...=. ..|..+||||||.... +.
T Consensus 175 ~y~FvIDvs~~av~sg~-----l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~ 249 (766)
T 3eh2_A 175 AFIFMIDVSYNAIRTGL-----VRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVA 249 (766)
T ss_dssp EEEEEEECSHHHHHTTH-----HHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred EEEEEEECchhhccchH-----HHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChh
Confidence 567999999753 3333 66777777777664211 0123789999997531 11
Q ss_pred ---------EEECCCCCHHHHHHHhcCc------cccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcC-CCCCCh--
Q 015559 61 ---------VLVTPTSDLGKILACMHGL------EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGS-PIKHEK-- 122 (404)
Q Consensus 61 ---------VLvtlT~D~~kils~L~~l------~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgS-p~~~d~-- 122 (404)
.|+++......|...|+.| ....++.++.||+.|.++|+. .+..-||++|++| |.+..+
T Consensus 250 d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~---~~~GGkI~~F~s~lP~t~GpG~ 326 (766)
T 3eh2_A 250 DMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKA---AECAGKLFLFHTSLPIAEAPGK 326 (766)
T ss_dssp TCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHH---TTCCEEEEEEECSCCCSSSTTC
T ss_pred hhccccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhcc---CCCCcEEEEEecCCCCcCCCcc
Confidence 1223333344454555544 233577899999999999987 3468899999988 653111
Q ss_pred -----------------------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcC
Q 015559 123 -----------------------KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN 164 (404)
Q Consensus 123 -----------------------~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~ 164 (404)
+--.++|+++.+++|.||+..++... -...-|..+++.++|
T Consensus 327 l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~-vdlatl~~l~~~TGG 390 (766)
T 3eh2_A 327 LKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQY-VDVATLSVVPQLTGG 390 (766)
T ss_dssp CCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSC-CCHHHHTHHHHHTTC
T ss_pred cccccccccCCCcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecCCC-cChHHHHHHHhhcCc
Confidence 12368999999999999999998866 567788888877743
No 38
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=97.67 E-value=0.00063 Score=74.11 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=97.0
Q ss_pred eEEEEEeCChhhh-CCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc-----------cEE-----------
Q 015559 5 ATLICIDNSEWMR-NGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG-----------VRV----------- 61 (404)
Q Consensus 5 a~vIvIDnSesMr-ngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~-----------a~V----------- 61 (404)
+.++|||+|..-. +| =+++.++++...+.. .-.|+..+||||||.... +..
T Consensus 162 ~yvFvIDvs~~a~~~g-----~l~~~~~sl~~~L~~-lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~ 235 (751)
T 3eh1_A 162 VYLFVLDVSHNAVEAG-----YLTILCQSLLENLDK-LPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFL 235 (751)
T ss_dssp EEEEEEECSHHHHHHT-----HHHHHHHHHHHHTTT-SSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTS
T ss_pred EEEEEEEccHhhhhhh-----HHHHHHHHHHHHHHh-cCCCcCcEEEEEEeCCEEEEEECCCCcccceeeccccccccCC
Confidence 5689999996533 33 245556666555543 222344489999997531 111
Q ss_pred ------EECCCCCHHHHHHHhcCcc---c---cCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChh------
Q 015559 62 ------LVTPTSDLGKILACMHGLE---I---GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKK------ 123 (404)
Q Consensus 62 ------LvtlT~D~~kils~L~~l~---~---~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~------ 123 (404)
|+++......|-..|+.|. . .-...++.||++|..+|++ ..-||++|++|+-+..++
T Consensus 236 P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~-----~GGrI~~F~sg~pt~GpG~l~~r~ 310 (751)
T 3eh1_A 236 PTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSP-----TGGRVSVFQTQLPSLGAGLLQSRE 310 (751)
T ss_dssp CCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTT-----TCEEEEEEECSCCCSSTTCCCCCC
T ss_pred CChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhc-----CCCEEEEEecCCCCCCCCcccccc
Confidence 1223333344444455442 1 2358899999999999986 467999999886653222
Q ss_pred -------------------HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 124 -------------------VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 124 -------------------~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
--.++|+++.+++|.||+..|+..- -...-|..+++.++
T Consensus 311 ~~~~~~~~ke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~-~dlatl~~l~~~TG 368 (751)
T 3eh1_A 311 DPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQY-SDLASLACMSKYSA 368 (751)
T ss_dssp CSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSC-CCHHHHTHHHHTTT
T ss_pred ccccCCCchhhhhhcchHHHHHHHHHHHHhcCceEEEEEccCcc-cChHhHHHHHhhcC
Confidence 1368899999999999999998766 56677778887664
No 39
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=97.62 E-value=0.00039 Score=75.86 Aligned_cols=151 Identities=17% Similarity=0.154 Sum_probs=100.9
Q ss_pred eEEEEEeCChhh-hCCCCCCCHHHHHHHHHHHHHHHhcc----CCcCCeEEEEEecCCc-----------cEE-------
Q 015559 5 ATLICIDNSEWM-RNGDYAPSRFQAQTEAANLICGAKTQ----LNPENTVGVMTMAGKG-----------VRV------- 61 (404)
Q Consensus 5 a~vIvIDnSesM-rngD~~PtRl~Aq~dAv~~fv~~k~~----~NPesqVGLVtmag~~-----------a~V------- 61 (404)
+.++|||+|..- .+|. +++.++++...+...=. ..+..+||||||.... +..
T Consensus 179 ~y~FvIDvs~~av~sg~-----l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~ 253 (770)
T 3efo_B 179 AFIFMIDVSYSNIKNGL-----VKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVG 253 (770)
T ss_dssp EEEEEEECSHHHHHTTH-----HHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred EEEEEEEcchhhccchH-----HHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEecccc
Confidence 567999999764 4443 67777777777664211 1123699999997431 111
Q ss_pred ----------EECCCCCHHHHHHHhcCc------cccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcC-CCCCChh-
Q 015559 62 ----------LVTPTSDLGKILACMHGL------EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGS-PIKHEKK- 123 (404)
Q Consensus 62 ----------LvtlT~D~~kils~L~~l------~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgS-p~~~d~~- 123 (404)
|+++......|...|..| ....++.++.+|+.|.++|++. +..-||++|++| |.+..++
T Consensus 254 d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~---~~GGkI~~F~s~lP~t~GpG~ 330 (770)
T 3efo_B 254 EVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAA---DCPGKLFIFHSSLPTAEAPGK 330 (770)
T ss_dssp SCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHH---TCCEEEEEEECSCCCSSSTTC
T ss_pred cccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccC---CCCcEEEEEecCCCCcCCCcc
Confidence 122333333444444444 1235778899999999999873 367799999988 6532221
Q ss_pred ------------------------HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcC
Q 015559 124 ------------------------VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN 164 (404)
Q Consensus 124 ------------------------~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~ 164 (404)
--.++|+++.+++|.||+..|+..- -...-|..++..++|
T Consensus 331 l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~-vdlatl~~l~~~TGG 394 (770)
T 3efo_B 331 LKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQY-VDVASLGLVPQLTGG 394 (770)
T ss_dssp CCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSC-CCHHHHTHHHHHTTC
T ss_pred ccccccccccCCcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCc-cChHHHHHHHhhcCc
Confidence 2257899999999999999998866 567778888877743
No 40
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=97.58 E-value=0.00077 Score=72.88 Aligned_cols=160 Identities=10% Similarity=0.106 Sum_probs=100.5
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc--------------------------
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG-------------------------- 58 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~-------------------------- 58 (404)
-+|+++|.|.||.. =|+..+..+..|+++.-..-..-++|+.+|.++.
T Consensus 113 Dly~LmD~S~SM~d------di~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c~~ 186 (690)
T 3fcs_B 113 DIYYLMDLSYSMKD------DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLP 186 (690)
T ss_dssp EEEEEEECSGGGHH------HHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCCCC
T ss_pred cEEEEecCCcchHH------HHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhhhccCCCcCCCCCCCC
Confidence 47999999999974 2344444555555554444456799999998842
Q ss_pred ---cEEEECCCCCHHHHHHHhcCccccCCCc----HHHHHHHHHHHhhhcCCCCCCeEEEEEE-cCCCC--CC-------
Q 015559 59 ---VRVLVTPTSDLGKILACMHGLEIGGELN----LAAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIK--HE------- 121 (404)
Q Consensus 59 ---a~VLvtlT~D~~kils~L~~l~~~G~~s----L~~gL~iA~lALKhr~~k~~~~RIVlFv-gSp~~--~d------- 121 (404)
.+-..+||.|..++...++++.+.|+.+ -..||..|..-.+...-+....|||||+ +.+.- .|
T Consensus 187 ~f~f~~~l~lt~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~agDg~l~gi~ 266 (690)
T 3fcs_B 187 MFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIV 266 (690)
T ss_dssp CCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCC
T ss_pred CccceeecccCCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCccccCCCcccccee
Confidence 1234789999999999999998877533 2334444432112211123466777766 33321 01
Q ss_pred ----------------------hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCC
Q 015559 122 ----------------------KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 177 (404)
Q Consensus 122 ----------------------~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~ 177 (404)
--.+-+++++|.++||.+.+..... .....+.|.+.+ .++.+.++-...
T Consensus 267 ~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~i~~ifavt~~----~~~~y~~l~~~i---~~s~v~~l~~dS 337 (690)
T 3fcs_B 267 QPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTEN----VVNLYQNYSELI---PGTTVGVLSMDS 337 (690)
T ss_dssp SCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEEEEEGG----GHHHHHHHHHHS---TTCEEEEECTTC
T ss_pred cCCCcceeecCCCccccccccCCCCHHHHHHHHHHcCCeEEEEEeCC----chhhHHHHHhhc---CCceeeeecccc
Confidence 1137899999999999876666553 345777777666 346666665543
No 41
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=97.48 E-value=1.7e-05 Score=58.20 Aligned_cols=39 Identities=36% Similarity=0.544 Sum_probs=32.1
Q ss_pred CchhHHHHHHHhcCCCCCCCCCCCCCCCCCCChHHHHHHHHhcccCCCC
Q 015559 291 HDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDGTK 339 (404)
Q Consensus 291 ~e~~~l~~al~mS~~~~~~~~~~~~~~~~~~ee~~ia~a~~ms~~~~~~ 339 (404)
++++.||+||++|+++. +..+||+.+.+|||+|||....
T Consensus 5 EDEedlqrALalSRQE~----------dmEDeeadLrrAiqLSmQGss~ 43 (52)
T 2klz_A 5 EDEEDLQRALALSRQEI----------DMEDEEADLRRAIQLSMQGSSR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHH----------CCSSSHHHHHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHHHHHHh----------ccchhHHHHHHHHHHHhhcccc
Confidence 35569999999999875 3457889999999999997654
No 42
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=97.25 E-value=0.00036 Score=75.41 Aligned_cols=157 Identities=13% Similarity=0.162 Sum_probs=98.5
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc--------------------------
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG-------------------------- 58 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~-------------------------- 58 (404)
-+|+++|.|.||.. =|+..+..+..|+++.-..-...++|+.+|.++.
T Consensus 106 Dly~LmD~S~SM~d------di~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c~~~ 179 (687)
T 3k6s_B 106 DLYYLMDLSYSMLD------DLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPP 179 (687)
T ss_dssp EEEEEEECSSTTHH------HHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCCCCC
T ss_pred eEEEEEcCCcchHH------HHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchhccCCCCCCCCCcCCc
Confidence 47999999999963 2334444445555555555667899999999742
Q ss_pred --cEEEECCCCCHHHHHHHhcCccccCCCcHHH-HHHHHHHHh---hhcCCCCCCeEEEEEEc-CCCC--CC--------
Q 015559 59 --VRVLVTPTSDLGKILACMHGLEIGGELNLAA-GIQVAQLAL---KHRQNKKQQQRIIVFVG-SPIK--HE-------- 121 (404)
Q Consensus 59 --a~VLvtlT~D~~kils~L~~l~~~G~~sL~~-gL~iA~lAL---Khr~~k~~~~RIVlFvg-Sp~~--~d-------- 121 (404)
.+-..+||.|..++...++++.+.|+.+.-. ++.-.+.|+ +...-+. ..|||||+. .+.- .|
T Consensus 180 f~f~~~l~lt~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~-a~rllV~~TDa~~H~agDg~l~gi~~ 258 (687)
T 3k6s_B 180 FAFRHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRN-VTRLLVFATDDGFHFAGDGKLGAILT 258 (687)
T ss_dssp CSCEEEEEEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCS-SCCEEEEECSSCCCCTTGGGGGTCCC
T ss_pred ccceeecccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCcc-ceEEEEEECCCccccCCCccccceec
Confidence 2235789999999999999998877633222 222222333 2211123 567777763 3321 01
Q ss_pred --------------------hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 015559 122 --------------------KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 122 --------------------~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~ 175 (404)
--.+-.++++|+++||.+.+..... .....+.|.+.+. ++.+.++-.
T Consensus 259 pndg~Chl~~~~y~~s~~~DyPS~~ql~~~l~~~~I~~ifavt~~----~~~~y~~l~~~i~---~s~v~~L~~ 325 (687)
T 3k6s_B 259 PNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSR----MVKTYEKLTEIIP---KSAVGELSE 325 (687)
T ss_dssp CCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEEECGG----GHHHHHHHHHHSS---SCCEEECCT
T ss_pred CCCCccccCCCccccccccCCCCHHHHHHHHHHcCCeEEEEEecc----chhhHHHHHhhcC---Cceeeeecc
Confidence 1136789999999999776666543 3457778877664 344555443
No 43
>1p9c_A 26S proteasome non-ATPase regulatory subunit 4; alpha helix, hairpin loop, ligand binding protein; NMR {Homo sapiens} SCOP: j.105.1.1 PDB: 1p9d_S 1uel_B
Probab=97.11 E-value=0.00012 Score=53.12 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.3
Q ss_pred CCCCCChHHHHHHHHhcccCCC
Q 015559 317 SEVAEDDPELALALQLSMQDGT 338 (404)
Q Consensus 317 ~~~~~ee~~ia~a~~ms~~~~~ 338 (404)
+..|+||++|++|||||||+.+
T Consensus 16 ~~~mteeeqla~ALqMSmq~~~ 37 (45)
T 1p9c_A 16 LSSMTEEEQIAYAMQMSLQGAE 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSS
T ss_pred hhccCchHHHHHHHHhcccccc
Confidence 3579999999999999999764
No 44
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=97.09 E-value=0.014 Score=60.28 Aligned_cols=159 Identities=12% Similarity=0.117 Sum_probs=105.0
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc--------------------------
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG-------------------------- 58 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~-------------------------- 58 (404)
-+|+++|+|.||.+ =++-.+.....|+.+.-+.-...++|+.+|.++-
T Consensus 124 DLyyLmDlS~SM~d------dl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c~~~f 197 (454)
T 3vi3_B 124 DLYYLMDLSYSMKD------DLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTTPF 197 (454)
T ss_dssp EEEEEEECSGGGHH------HHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCCCCCC
T ss_pred eEEEEecCCcchhh------HHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHhcCCCcCccCCCCCc
Confidence 37899999999974 3556666777788877777788999999999851
Q ss_pred -cEEEECCCCCHHHHHHHhcCccccCCCcH----HHHHHHHHHHhhhcCCCCCCeEEEEEEc-CCCC-------------
Q 015559 59 -VRVLVTPTSDLGKILACMHGLEIGGELNL----AAGIQVAQLALKHRQNKKQQQRIIVFVG-SPIK------------- 119 (404)
Q Consensus 59 -a~VLvtlT~D~~kils~L~~l~~~G~~sL----~~gL~iA~lALKhr~~k~~~~RIVlFvg-Sp~~------------- 119 (404)
.+-+.+||.|..++...+.++.+.|+-+. ..||..|...-+...-++ ..|+|||+. .+.-
T Consensus 198 ~fr~~l~LT~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~-a~rllV~~TDa~fH~agDgkL~GIv~P 276 (454)
T 3vi3_B 198 SYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRN-VTRLLVFSTDAGFHFAGDGKLGGIVLP 276 (454)
T ss_dssp SEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEEESSCBCCTTTTGGGTCCSC
T ss_pred ceeeeeecCCCHHHHHHHHhhccccCCCcCCchhHHHHHHHhccccccCCcc-ceEEEEEECCCCcCcCCCccccceecC
Confidence 12368899999999999999988876333 233333332212221233 678877762 2211
Q ss_pred ----C-------------ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCC
Q 015559 120 ----H-------------EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 177 (404)
Q Consensus 120 ----~-------------d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~ 177 (404)
+ |=-.+-.++++|.++||.+-+ .+-. ......+.|.+-+ .++.+.++....
T Consensus 277 NDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e~nI~~IF-AVt~---~~~~~Y~~L~~~i---p~s~vg~Ls~dS 344 (454)
T 3vi3_B 277 NDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENNIQTIF-AVTE---EFQPVYKELKNLI---PKSAVGTLSANS 344 (454)
T ss_dssp CCCCCCEETTEECCTTTSCCCCHHHHHHHHHHTTEEEEE-EEEG---GGHHHHHHHHHHS---TTEEEEEECTTC
T ss_pred CCCccEeCCCcccccccCCCCCHHHHHHHHHhcCCcEEE-EEcC---ccchHHHHHHHhC---CCceeeEccccc
Confidence 0 112588999999999996533 2222 2345777777666 346677776653
No 45
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=96.88 E-value=0.018 Score=59.71 Aligned_cols=160 Identities=11% Similarity=0.136 Sum_probs=103.6
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCcc-------------------------
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGV------------------------- 59 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a------------------------- 59 (404)
-+|+++|.|.||.. =++..+.....|.++.-......++|+.+|.++-.
T Consensus 113 DLy~LmDlS~SM~d------dl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~~c~p 186 (472)
T 3t3p_B 113 DIYYLMDLSYSMKD------DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLP 186 (472)
T ss_dssp EEEEEEECSGGGHH------HHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTSCCCC
T ss_pred eEEEEEccCcchHH------HHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhhhhcCCCcccccCCCC
Confidence 47999999999974 34556666777777777777789999999988621
Q ss_pred ----EEEECCCCCHHHHHHHhcCccccCCCcH----HHHHHHHHHHhhhcCCCCCCeEEEEEEc-CCCC-----------
Q 015559 60 ----RVLVTPTSDLGKILACMHGLEIGGELNL----AAGIQVAQLALKHRQNKKQQQRIIVFVG-SPIK----------- 119 (404)
Q Consensus 60 ----~VLvtlT~D~~kils~L~~l~~~G~~sL----~~gL~iA~lALKhr~~k~~~~RIVlFvg-Sp~~----------- 119 (404)
+-+.+||.|..++...++++.+.|+-+. ..||..|..--+...-+....|+|||+. .+.-
T Consensus 187 ~f~fr~~l~LT~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~agDgkL~GIv 266 (472)
T 3t3p_B 187 MFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIV 266 (472)
T ss_dssp CCSEEEEEEEESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCC
T ss_pred CcceeEeeccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCCCcCcCCCcccccee
Confidence 1257899999999999999988776333 3344444321122212235668877762 2110
Q ss_pred ------C--------------ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCC
Q 015559 120 ------H--------------EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 177 (404)
Q Consensus 120 ------~--------------d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~ 177 (404)
+ |--.+-.+.++|.++||.+-.- + .. ......+.|.+-+ .++.+.++....
T Consensus 267 ~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~nI~~IFA-V--t~-~~~~~Y~~L~~~i---p~s~vg~L~~dS 337 (472)
T 3t3p_B 267 QPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFA-V--TE-NVVNLYQNYSELI---PGTTVGVLSMDS 337 (472)
T ss_dssp CCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHTTCEEEEE-E--CG-GGHHHHHHHHHTS---TTCEEEECCTTS
T ss_pred cCCCCceEECCCCcccccccCCCCCHHHHHHHHHhcCccEEEE-E--ec-cchhHHHHHHHhC---CCceeeeccccc
Confidence 0 1125789999999999865332 2 22 3456778887666 346666665543
No 46
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=96.79 E-value=0.0032 Score=60.15 Aligned_cols=73 Identities=8% Similarity=0.131 Sum_probs=52.5
Q ss_pred CCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC---CcHHHHHHHHHHhcCCCCcEEEEeCCCCchhh
Q 015559 105 KQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE---GNTEKLEALLAAVNNNDSSHLVHVPPGPNALS 181 (404)
Q Consensus 105 ~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~---~n~~~L~~~~~~vn~~d~Shlv~vp~g~~lLs 181 (404)
...+.|||++++..++.. ++..+|+.+++.||+|++||||.... ...+.|+.+.+.+ ++.||.. .. . -|+
T Consensus 8 ~~~k~iillTDG~~~~g~-~p~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~t---GG~yf~a-~~-~-~l~ 80 (242)
T 3rag_A 8 ATIRQILVITDGCSNIGP-DPVEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAG---GGMCRIV-QP-A-DIS 80 (242)
T ss_dssp CCEEEEEEEESSCCCSSS-CHHHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHT---TSCEEEE-CG-G-GHH
T ss_pred CCccEEEEEccCCCCCCC-CHHHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhc---CCeEEEe-eH-H-HHH
Confidence 355678888888766644 78899999999999999999975421 1236799998776 4566664 33 2 367
Q ss_pred hhh
Q 015559 182 DVL 184 (404)
Q Consensus 182 D~l 184 (404)
+.|
T Consensus 81 ~~~ 83 (242)
T 3rag_A 81 ATA 83 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 47
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=96.76 E-value=0.027 Score=58.82 Aligned_cols=156 Identities=13% Similarity=0.165 Sum_probs=104.5
Q ss_pred eEEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc--------------------------
Q 015559 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG-------------------------- 58 (404)
Q Consensus 5 a~vIvIDnSesMrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~-------------------------- 58 (404)
-+|+++|.|.||.+ =++..+.....|.+..-+.....++|+.+|.++-
T Consensus 134 DLyyLmDlS~SM~d------dl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~c~p~ 207 (503)
T 3v4v_B 134 DLYYLMDLSYSMKD------DLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLERCQSP 207 (503)
T ss_dssp EEEEEEECSGGGHH------HHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHHHHCCSSCSSSCCCCC
T ss_pred eEEEEEecCcchhh------HHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHHhcCCCcCCCCCCCCC
Confidence 47999999999974 3556677778888887777788999999998851
Q ss_pred --cEEEECCCCCHHHHHHHhcCccccCCCcH----HHHHHHHHH---HhhhcCCCCCCeEEEEEEc-CCCC---------
Q 015559 59 --VRVLVTPTSDLGKILACMHGLEIGGELNL----AAGIQVAQL---ALKHRQNKKQQQRIIVFVG-SPIK--------- 119 (404)
Q Consensus 59 --a~VLvtlT~D~~kils~L~~l~~~G~~sL----~~gL~iA~l---ALKhr~~k~~~~RIVlFvg-Sp~~--------- 119 (404)
.+-+.+||.|..++...+.++.+.|+.+. ..||..|.. -+.-| . ..|+|||+. .+.-
T Consensus 208 f~fr~~l~LT~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~IgWR---~-a~rllV~~TDA~fH~agDgkLaG 283 (503)
T 3v4v_B 208 FSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWR---N-VSRLLVFTSDDTFHTAGDGKLGG 283 (503)
T ss_dssp CSEEEEEEEESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCC---S-SEEEEEEEESSCBCCTTGGGTTT
T ss_pred cceEEEEEecCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhcccccCCC---c-ceEEEEEECCCCcCcCCCccccc
Confidence 12257899999999999999988776433 334433332 22233 2 568888773 1110
Q ss_pred --------C--------------ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCC
Q 015559 120 --------H--------------EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 177 (404)
Q Consensus 120 --------~--------------d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~ 177 (404)
+ |--.+-.+.++|.++||.+- |.-.. ......+.|.+.+ .++.+.++....
T Consensus 284 Iv~pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~ennI~~I---FAVt~-~~~~~Y~~L~~~i---p~s~vg~Ls~dS 356 (503)
T 3v4v_B 284 IFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAANIQPI---FAVTS-AALPVYQELSKLI---PKSAVGELSEDS 356 (503)
T ss_dssp CCSCCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHTEEEE---EEECS-SSHHHHHHHHTTS---TTCEEEECCTTS
T ss_pred eecCCCCCeEECCCCccccccccCCCCHHHHHHHHHhcCCeEE---EEEcc-cchhHHHHHHHhC---CCceeeEccccc
Confidence 1 11247789999999999442 44333 3456778887665 346666665543
No 48
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=91.50 E-value=0.17 Score=40.77 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=17.9
Q ss_pred CCCCCCCHHHHHHHHhcHHHH
Q 015559 218 GVDPNLDPELALALRVSMEEE 238 (404)
Q Consensus 218 gvDp~~DPELa~ALr~SlEEe 238 (404)
.++-..|.+|..||.|||+|-
T Consensus 6 ~~~~~eDeDLkrAieLSL~Es 26 (81)
T 1q0v_A 6 STPEDEEELIRKAIELSLKES 26 (81)
T ss_dssp CCCSSHHHHHHHHHHHHHHCC
T ss_pred ccccCchHHHHHHHHHhHHHH
Confidence 456678899999999999984
No 49
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=91.49 E-value=0.12 Score=41.62 Aligned_cols=49 Identities=29% Similarity=0.376 Sum_probs=33.6
Q ss_pred CCchhHHHHHHHhcCCCCCCC----C--CC------C-CCCCCCCChHHHHHHHHhcccCCC
Q 015559 290 KHDEGLLQEAIAMSSTPSYPS----G--RD------T-NMSEVAEDDPELALALQLSMQDGT 338 (404)
Q Consensus 290 ~~e~~~l~~al~mS~~~~~~~----~--~~------~-~~~~~~~ee~~ia~a~~ms~~~~~ 338 (404)
.++++.|++||.||+.+.... . +. + ....+.+||++|..||+-||.+.+
T Consensus 9 ~~eDeDLkrAieLSL~Es~~~~~~~~yvp~~~~~~~~~~~~~~edeD~DLKAAIaASLrd~E 70 (81)
T 1q0v_A 9 EDEEELIRKAIELSLKESRNSASSEPIVPVVESKNEVKRQEIEEEEDPDLKAAIQESLREAE 70 (81)
T ss_dssp SSHHHHHHHHHHHHHHCCCCCSCCCCCCCCCCCCCCCCCCCCCCCSCHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhHHHHcCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHH
Confidence 568889999999999643211 0 00 0 112346789999999999998654
No 50
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=89.72 E-value=0.29 Score=42.72 Aligned_cols=91 Identities=22% Similarity=0.264 Sum_probs=45.8
Q ss_pred hcCCCCCccCCCCCCCHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcc----cccccCCCCCCCccc
Q 015559 209 ASGASGYEFGVDPNLDPELALALRVS--MEEERARQEAAAKRAAEEAAKKEKQGEQQSSSQ----DVTMTDQDSVPASEA 282 (404)
Q Consensus 209 ~~~~~~~efgvDp~~DPELa~ALr~S--lEEe~~rq~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 282 (404)
++-..+++-.+||++==-|+|-|.-- -.|..+|+..+...+....+ ..+....... ...++... +.
T Consensus 28 ~~fefgvDp~~DPeLa~ALr~Smeee~~Rqe~~~~~~~e~saa~~~~a---~~~~~~~eeamL~~a~~~~~~~-----~~ 99 (132)
T 1yx4_A 28 SDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIA---TTGTEDSDDALLKMTISQQEFG-----RT 99 (132)
T ss_dssp SSCCSCSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSS---CCCCCSCHHHHHHHHHHHHHHH-----HS
T ss_pred cccccCCCCCcCHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccc---ccCCcccHHHHHHHhhcccccC-----CC
Confidence 34456788889999999999998433 33333333333322211111 0110000000 00000000 00
Q ss_pred ccccccCCCchhHHHHHHHhcCCCC
Q 015559 283 DDKKKTTKHDEGLLQEAIAMSSTPS 307 (404)
Q Consensus 283 ~~~~~~~~~e~~~l~~al~mS~~~~ 307 (404)
...+..+|.|+++|++||.|||++.
T Consensus 100 ~~~d~~~MtEEeqLa~ALqMSMQe~ 124 (132)
T 1yx4_A 100 GLPDLSSMTEEEQIAYAMQMSLQGA 124 (132)
T ss_dssp SCCCSTTSCHHHHHHHHHHHSSSSC
T ss_pred CCCchhhCChHHHHHHHHHhccccc
Confidence 0112346899999999999999864
No 51
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=85.68 E-value=5.5 Score=32.77 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=18.8
Q ss_pred CCCCCCCHHHHHHHHhcHHHHHHHHH
Q 015559 218 GVDPNLDPELALALRVSMEEERARQE 243 (404)
Q Consensus 218 gvDp~~DPELa~ALr~SlEEe~~rq~ 243 (404)
.++|..--+|+-+|+.-++....|++
T Consensus 121 ~~~~~~~~~l~~~i~~l~~~~~~~~~ 146 (166)
T 3qhp_A 121 LFEPNNAKDLSAKIDWWLENKLERER 146 (166)
T ss_dssp EECTTCHHHHHHHHHHHHHCHHHHHH
T ss_pred EEcCCCHHHHHHHHHHHHhCHHHHHH
Confidence 46777777899999988875554443
No 52
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=85.31 E-value=0.22 Score=36.60 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=16.0
Q ss_pred CCchhHHHHHHHhcCCCCC
Q 015559 290 KHDEGLLQEAIAMSSTPSY 308 (404)
Q Consensus 290 ~~e~~~l~~al~mS~~~~~ 308 (404)
++|++-|++|+.|||++..
T Consensus 24 EDeeadLrrAiqLSmQGss 42 (52)
T 2klz_A 24 EDEEADLRRAIQLSMQGSS 42 (52)
T ss_dssp SSSHHHHHHHHHHHHTTCC
T ss_pred chhHHHHHHHHHHHhhccc
Confidence 4677899999999998764
No 53
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=84.81 E-value=0.27 Score=35.02 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=16.3
Q ss_pred CCChHHHHHHHHhcccCC
Q 015559 320 AEDDPELALALQLSMQDG 337 (404)
Q Consensus 320 ~~ee~~ia~a~~ms~~~~ 337 (404)
|+|||++|.||.||-|+.
T Consensus 1 MtEEEq~ALA~kmSeQEA 18 (46)
T 2rr9_C 1 MTEEEQFALALKMSEQEA 18 (46)
T ss_dssp CCSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhHHHH
Confidence 799999999999998864
No 54
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=84.30 E-value=0.25 Score=35.11 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=17.0
Q ss_pred CCCChHHHHHHHHhcccCC
Q 015559 319 VAEDDPELALALQLSMQDG 337 (404)
Q Consensus 319 ~~~ee~~ia~a~~ms~~~~ 337 (404)
.|+|||++|.||.||-|+.
T Consensus 3 ~mtEEEq~ALA~rmSeQEA 21 (45)
T 3a1q_C 3 LGSEEEQFALALKMSEQEA 21 (45)
T ss_dssp CSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhHHHH
Confidence 6899999999999998863
No 55
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=82.73 E-value=1.3 Score=31.43 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=10.7
Q ss_pred CCHHHHHHHHhcHHH
Q 015559 223 LDPELALALRVSMEE 237 (404)
Q Consensus 223 ~DPELa~ALr~SlEE 237 (404)
..-.||||||||-+|
T Consensus 6 EEEq~ALA~rmSeQE 20 (45)
T 3a1q_C 6 EEEQFALALKMSEQE 20 (45)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHH
Confidence 345689999998443
No 56
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=82.11 E-value=1.7 Score=31.03 Aligned_cols=15 Identities=47% Similarity=0.534 Sum_probs=11.3
Q ss_pred CchhHHHHHHHhcCC
Q 015559 291 HDEGLLQEAIAMSST 305 (404)
Q Consensus 291 ~e~~~l~~al~mS~~ 305 (404)
.|+.+|++|++-|+.
T Consensus 27 ~E~~llrKAIaESLn 41 (46)
T 2rr9_C 27 EEEELLRKAIAESLN 41 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 366789999988764
No 57
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=66.47 E-value=28 Score=32.63 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=35.5
Q ss_pred eEEEEEEcCCCCC-ChhHHHHHHHHHHhC-CceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 108 QRIIVFVGSPIKH-EKKVLEMIGRKLKKN-SVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 108 ~RIVlFvgSp~~~-d~~~l~~~ak~LKkn-nI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
..+|+|+|..... ....+.++++++++. ++.+.|||-|.. .+.|+.+++..+
T Consensus 211 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~----~~~l~~~~~~~~ 264 (394)
T 2jjm_A 211 EKILIHISNFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGPE----FCTILQLVKNLH 264 (394)
T ss_dssp -CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCEEEEECCCTT----HHHHHHHHHTTT
T ss_pred CeEEEEeeccccccCHHHHHHHHHHHHhhCCCEEEEECCchH----HHHHHHHHHHcC
Confidence 4578888876543 556777888888765 677777776543 357888877653
No 58
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=62.74 E-value=36 Score=31.24 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=46.1
Q ss_pred CCeEEEEEEcCCCCC-ChhHHHHHHHHHHhC---CceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCCchhh
Q 015559 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN---SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALS 181 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn---nI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~~lLs 181 (404)
....+|+|+|..... ....+.++++.+++. ++.+.+||-|.. +.++.+++..+-.+ ++..+..-. -+.
T Consensus 194 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~~-----~~~~~~~~~~~~~~--~v~~~g~~~-~~~ 265 (374)
T 2iw1_A 194 EQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKP-----RKFEALAEKLGVRS--NVHFFSGRN-DVS 265 (374)
T ss_dssp TTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCC-----HHHHHHHHHHTCGG--GEEEESCCS-CHH
T ss_pred CCCeEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCCH-----HHHHHHHHHcCCCC--cEEECCCcc-cHH
Confidence 345688899976543 455666777776654 788888887653 36788887764322 233333322 255
Q ss_pred hhhhcCccc
Q 015559 182 DVLLSTPIF 190 (404)
Q Consensus 182 D~l~sspi~ 190 (404)
+.+..+.|+
T Consensus 266 ~~~~~ad~~ 274 (374)
T 2iw1_A 266 ELMAAADLL 274 (374)
T ss_dssp HHHHHCSEE
T ss_pred HHHHhcCEE
Confidence 555555443
No 59
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=61.66 E-value=13 Score=31.37 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=27.7
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~ 160 (404)
.+++|+|+|..... ....+.++++++ .++.+.+||-|.... .++.++.
T Consensus 22 ~~~~i~~~G~~~~~Kg~~~li~a~~~l--~~~~l~i~G~~~~~~----~l~~~~~ 70 (177)
T 2f9f_A 22 YGDFWLSVNRIYPEKRIELQLEVFKKL--QDEKLYIVGWFSKGD----HAERYAR 70 (177)
T ss_dssp CCSCEEEECCSSGGGTHHHHHHHHHHC--TTSCEEEEBCCCTTS----THHHHHH
T ss_pred CCCEEEEEeccccccCHHHHHHHHHhC--CCcEEEEEecCccHH----HHHHHHH
Confidence 34567787765432 333444444444 378888888776542 4566665
No 60
>1p9c_A 26S proteasome non-ATPase regulatory subunit 4; alpha helix, hairpin loop, ligand binding protein; NMR {Homo sapiens} SCOP: j.105.1.1 PDB: 1p9d_S 1uel_B
Probab=60.85 E-value=2.2 Score=30.67 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=16.0
Q ss_pred CCCchhHHHHHHHhcCCCC
Q 015559 289 TKHDEGLLQEAIAMSSTPS 307 (404)
Q Consensus 289 ~~~e~~~l~~al~mS~~~~ 307 (404)
.+.+++.|+.||.|||+..
T Consensus 18 ~mteeeqla~ALqMSmq~~ 36 (45)
T 1p9c_A 18 SMTEEEQIAYAMQMSLQGA 36 (45)
T ss_dssp HHHHHHHHHHHHHHHTSSS
T ss_pred ccCchHHHHHHHHhccccc
Confidence 4678889999999999854
No 61
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=60.11 E-value=96 Score=29.26 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=37.7
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhC----CceEEEEEe----CCCCCCcHHHHHHHHHHhcCCCCcE
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN----SVALDIVNF----GEDDEGNTEKLEALLAAVNNNDSSH 169 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn----nI~VdiI~f----G~e~~~n~~~L~~~~~~vn~~d~Sh 169 (404)
...+|+|+|..... ....++++++++++. ++.+.|||- |... +.|+.+++..+-.++-+
T Consensus 242 ~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~----~~l~~~~~~~~l~~~v~ 309 (438)
T 3c48_A 242 HTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATP----DTYRHMAEELGVEKRIR 309 (438)
T ss_dssp SSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC----------CHHHHHHHHTTCTTTEE
T ss_pred CCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHH----HHHHHHHHHcCCCCcEE
Confidence 45678888876543 566778888888765 677777776 4333 47888887765434333
No 62
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=56.90 E-value=40 Score=31.85 Aligned_cols=65 Identities=20% Similarity=0.133 Sum_probs=44.5
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCC-CcHHHHHHHHHHhcCCCCcEEE
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDE-GNTEKLEALLAAVNNNDSSHLV 171 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~-~n~~~L~~~~~~vn~~d~Shlv 171 (404)
...+|+|+|..... ....+.++++.+++. ++.+.|||-|.... ...+.|+.+++..+..++-+|+
T Consensus 230 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~ 298 (416)
T 2x6q_A 230 EKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVL 298 (416)
T ss_dssp TSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEe
Confidence 44678898876543 567788888888775 78888888886421 1235788888887654554554
No 63
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=52.19 E-value=62 Score=29.79 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=33.8
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHH
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALL 159 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~L~~~~ 159 (404)
...+|+|+|..... ....+.+++++|++. ++.+.|||-|... +.++.++
T Consensus 197 ~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~----~~l~~~~ 248 (394)
T 3okp_A 197 TTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYE----STLRRLA 248 (394)
T ss_dssp TCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEECCCTTH----HHHHHHT
T ss_pred CceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEcCchHH----HHHHHHH
Confidence 34678898886543 566778888888775 6777777765433 5677776
No 64
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=52.05 E-value=9.1 Score=24.45 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=12.1
Q ss_pred HHHHHHHHhcHHHHHHH
Q 015559 225 PELALALRVSMEEERAR 241 (404)
Q Consensus 225 PELa~ALr~SlEEe~~r 241 (404)
-||++||-+|+-|..+|
T Consensus 5 EEl~LAlAlS~sEae~~ 21 (26)
T 2d3g_P 5 EELQLALALSQSEAEEK 21 (26)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46788888887776554
No 65
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=50.46 E-value=64 Score=31.20 Aligned_cols=78 Identities=5% Similarity=-0.055 Sum_probs=48.9
Q ss_pred eEEEEEEcCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCCchhhhhhhc
Q 015559 108 QRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLS 186 (404)
Q Consensus 108 ~RIVlFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~~lLsD~l~s 186 (404)
..+|+|+|..... ....++++++++++.++.+.|||-|... -.+.|+.++.... ++-++ ........+.+.+..
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~--~~~~l~~~~~~~~--~~v~~-~~g~~~~~~~~~~~~ 365 (485)
T 1rzu_A 291 SPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVA--LEGALLAAASRHH--GRVGV-AIGYNEPLSHLMQAG 365 (485)
T ss_dssp SCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHH--HHHHHHHHHHHTT--TTEEE-EESCCHHHHHHHHHH
T ss_pred CeEEEEEccCccccCHHHHHHHHHHHHhcCceEEEEeCCchH--HHHHHHHHHHhCC--CcEEE-ecCCCHHHHHHHHhc
Confidence 4588999977543 5667788888888889999999988531 1357888887662 33331 122222334555555
Q ss_pred Cccc
Q 015559 187 TPIF 190 (404)
Q Consensus 187 spi~ 190 (404)
+.|+
T Consensus 366 adv~ 369 (485)
T 1rzu_A 366 CDAI 369 (485)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 5443
No 66
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=49.42 E-value=27 Score=29.82 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=35.5
Q ss_pred CCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 106 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
..++|+|+.+|+...++.-...+++.|++.++.|.++.+...
T Consensus 3 ~~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 44 (159)
T 3fni_A 3 AETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAA 44 (159)
T ss_dssp CCCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCc
Confidence 345788888999777788888899999999999999999876
No 67
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=49.12 E-value=13 Score=28.33 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=22.8
Q ss_pred HHHHHhcCCCCCCCChHHHHHHHHhhc
Q 015559 357 VSSILASLPGVDPEDPSVKDVLTSMQN 383 (404)
Q Consensus 357 ~~s~l~~lpgvdp~~~~i~~~l~~~~~ 383 (404)
+...|..+|||||.||.=+.+|.-|.+
T Consensus 31 V~rfLs~~eg~d~~d~~r~rLl~HL~~ 57 (64)
T 2db7_A 31 VARYLSIIEGLDASDPLRVRLVSHLNN 57 (64)
T ss_dssp HHHHHHHTSCCCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 567899999999999988888887764
No 68
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=48.59 E-value=51 Score=30.99 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=30.6
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
.||+||.| +.+ +.+|=+-+|+.|+..|..|.|+-++...
T Consensus 86 ~~vlVlcG-~GN-NGGDGlv~AR~L~~~G~~V~v~~~~~~~ 124 (259)
T 3d3k_A 86 PTVALLCG-PHV-KGAQGISCGRHLANHDVQVILFLPNFVK 124 (259)
T ss_dssp CEEEEEEC-SSH-HHHHHHHHHHHHHHTTCEEEEECCBCSS
T ss_pred CeEEEEEC-CCC-CHHHHHHHHHHHHHCCCeEEEEEecCCC
Confidence 47777766 433 4678899999999999999999888543
No 69
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=47.60 E-value=18 Score=31.04 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=31.8
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
++|+|+.+|+...+..-...+++.+++.++.|.+|.+...
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 45 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAV 45 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCE
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhc
Confidence 3789999998544566666778889989999999998764
No 70
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=46.41 E-value=93 Score=28.15 Aligned_cols=64 Identities=9% Similarity=0.086 Sum_probs=44.5
Q ss_pred CCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 015559 106 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV 173 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v 173 (404)
..-++.|+.||. .|-.-+.++++.|++.+|..++--.|.+ ...+.+..|++.....+-.-||.+
T Consensus 11 ~~P~V~IimGS~--SD~~v~~~a~~~l~~~gi~~ev~V~saH--R~p~~l~~~~~~a~~~g~~ViIa~ 74 (173)
T 4grd_A 11 SAPLVGVLMGSS--SDWDVMKHAVAILQEFGVPYEAKVVSAH--RMPDEMFDYAEKARERGLRAIIAG 74 (173)
T ss_dssp SSCSEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCTT--TSHHHHHHHHHHHTTTTCSEEEEE
T ss_pred CCCeEEEEeCcH--hHHHHHHHHHHHHHHcCCCEEEEEEccc--cCHHHHHHHHHHHHhcCCeEEEEe
Confidence 344677777765 3677788899999999999776555553 467888888887765444444444
No 71
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=46.29 E-value=42 Score=29.97 Aligned_cols=66 Identities=20% Similarity=0.361 Sum_probs=43.5
Q ss_pred eEEEEEEcCCCCCC-hhHHHHHHHHHHhCCceEEEEEeCCCCC-------CcHHHHHHHHHHhcCCCCcEEEEeCC
Q 015559 108 QRIIVFVGSPIKHE-KKVLEMIGRKLKKNSVALDIVNFGEDDE-------GNTEKLEALLAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 108 ~RIVlFvgSp~~~d-~~~l~~~ak~LKknnI~VdiI~fG~e~~-------~n~~~L~~~~~~vn~~d~Shlv~vp~ 175 (404)
++|+|++||+-... ...+.+.+.++...++.|.+|.+.+--. ...+..++|.+++..-| .+|.+-|
T Consensus 3 k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD--~~ii~tP 76 (190)
T 3u7r_A 3 KTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSD--AVLAITP 76 (190)
T ss_dssp EEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSS--EEEEECC
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCC--cEEEech
Confidence 57899999987643 3456666677777899999999875111 12345677877776433 4555544
No 72
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=46.04 E-value=36 Score=31.79 Aligned_cols=56 Identities=18% Similarity=0.139 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhcCCCCC-----CeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 90 GIQVAQLALKHRQNKKQ-----QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 90 gL~iA~lALKhr~~k~~-----~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
|..+|...+++.+.... ..||+||.| +.+ +-+|=+.+|+.|+..|..|.|+-++..
T Consensus 36 g~ava~~i~~~~~~~~~~~~~~~~~v~VlcG-~GN-NGGDGlv~AR~L~~~G~~V~v~~~~~~ 96 (246)
T 1jzt_A 36 GFSVAQAVCRQFPLRGKTETEKGKHVFVIAG-PGN-NGGDGLVCARHLKLFGYNPVVFYPKRS 96 (246)
T ss_dssp HHHHHHHHHHHSCCSSCCHHHHTCEEEEEEC-SSH-HHHHHHHHHHHHHHTTCCEEEECCCCC
T ss_pred HHHHHHHHHHHccccccccccCCCeEEEEEC-CCC-CHHHHHHHHHHHHHCCCeEEEEEcCCC
Confidence 45555555555322101 157777765 433 467889999999999999999877763
No 73
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=45.84 E-value=22 Score=31.07 Aligned_cols=40 Identities=5% Similarity=0.063 Sum_probs=32.6
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
++|+|+.+|+...+..-...+++.+++.++.|.+|.+...
T Consensus 7 mkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 46 (211)
T 1ydg_A 7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRET 46 (211)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 5899999999544556666778889989999999999875
No 74
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=45.76 E-value=22 Score=30.30 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=33.5
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
++|+|+.+|+...++.-...+++.|++.++.|.++.+....
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~ 41 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVD 41 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCC
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCC
Confidence 36778889997777777888899999999999999987644
No 75
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=45.64 E-value=18 Score=29.75 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=31.6
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
++|+|+.+|+...+..-...+++.|...++.|.++.+...
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~ 40 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASV 40 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhC
Confidence 3678888998765666667788888888999999988653
No 76
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=45.58 E-value=31 Score=33.43 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=30.5
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
.||+||.| +.+ +.++=+.+|+.|+..|+.|.|+-+|...
T Consensus 133 ~~vlVlcG-~GN-NGGDGlv~AR~L~~~G~~V~V~~~~~~~ 171 (306)
T 3d3j_A 133 PTVALLCG-PHV-KGAQGISCGRHLANHDVQVILFLPNFVK 171 (306)
T ss_dssp CEEEEEEC-SSH-HHHHHHHHHHHHHHTTCEEEEECCCCSS
T ss_pred CeEEEEEC-CCC-CHHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 57777655 433 4678899999999999999999888543
No 77
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=45.51 E-value=21 Score=29.43 Aligned_cols=40 Identities=8% Similarity=0.302 Sum_probs=32.2
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
++|+|+.+|....+..-...+++.|++.++.|+++.+...
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~ 41 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADA 41 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTB
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhC
Confidence 3678888887656677777888999999999999988764
No 78
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=45.12 E-value=30 Score=30.84 Aligned_cols=44 Identities=7% Similarity=0.206 Sum_probs=30.1
Q ss_pred CCCCeEEEEEEcCCCCCC-hhHH-HHHHH----HHHhC--CceEEEEEeCCC
Q 015559 104 KKQQQRIIVFVGSPIKHE-KKVL-EMIGR----KLKKN--SVALDIVNFGED 147 (404)
Q Consensus 104 k~~~~RIVlFvgSp~~~d-~~~l-~~~ak----~LKkn--nI~VdiI~fG~e 147 (404)
..|-.||++|+|||.... ...+ ..+++ .|++. ++.|.+|.+++.
T Consensus 8 ~~~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~ 59 (191)
T 3k1y_A 8 HSHMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSEL 59 (191)
T ss_dssp -CCSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred hhhhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhC
Confidence 446678999999998653 2233 34455 56665 899999998763
No 79
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=45.03 E-value=93 Score=27.93 Aligned_cols=61 Identities=8% Similarity=0.101 Sum_probs=41.7
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV 173 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v 173 (404)
++.|+.||. .|-....++++.|++.||..++--.|.+ ...+.+..|++.....+-.-||.+
T Consensus 7 ~V~IimgS~--SD~~v~~~a~~~l~~~gi~~ev~V~SaH--Rtp~~l~~~~~~~~~~g~~ViIa~ 67 (166)
T 3oow_A 7 QVGVIMGSK--SDWSTMKECCDILDNLGIGYECEVVSAH--RTPDKMFDYAETAKERGLKVIIAG 67 (166)
T ss_dssp EEEEEESSG--GGHHHHHHHHHHHHHTTCEEEEEECCTT--TCHHHHHHHHHHTTTTTCCEEEEE
T ss_pred eEEEEECcH--HhHHHHHHHHHHHHHcCCCEEEEEEcCc--CCHHHHHHHHHHHHhCCCcEEEEE
Confidence 677777765 3667788888888999998776555542 467788888877754333444444
No 80
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=44.68 E-value=83 Score=28.18 Aligned_cols=62 Identities=8% Similarity=0.138 Sum_probs=39.1
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV 173 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v 173 (404)
.++.|+.||. .|-..+.++++.|++.||..++--.|. . -..+.+..|++.....+-.-||.+
T Consensus 4 ~~V~Iimgs~--SD~~v~~~a~~~l~~~gi~~ev~V~Sa-H-R~p~~~~~~~~~a~~~g~~ViIa~ 65 (163)
T 3ors_A 4 MKVAVIMGSS--SDWKIMQESCNMLDYFEIPYEKQVVSA-H-RTPKMMVQFASEARERGINIIIAG 65 (163)
T ss_dssp CCEEEEESCG--GGHHHHHHHHHHHHHTTCCEEEEECCT-T-TSHHHHHHHHHHTTTTTCCEEEEE
T ss_pred CeEEEEECcH--HHHHHHHHHHHHHHHcCCCEEEEEECC-c-CCHHHHHHHHHHHHhCCCcEEEEE
Confidence 3566776764 366677788888888888877544443 2 467788888776654333333333
No 81
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=44.67 E-value=80 Score=28.60 Aligned_cols=61 Identities=11% Similarity=0.211 Sum_probs=41.1
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV 173 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v 173 (404)
++.|+.||. .|-....++++.|++.||.+++--.|.+ ...+.+..|++.....+-.-||.+
T Consensus 14 ~V~IimGS~--SD~~v~~~a~~~L~~~Gi~~ev~V~SaH--R~p~~~~~~~~~a~~~g~~ViIa~ 74 (174)
T 3kuu_A 14 KIAIVMGSK--SDWATMQFAADVLTTLNVPFHVEVVSAH--RTPDRLFSFAEQAEANGLHVIIAG 74 (174)
T ss_dssp CEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCTT--TCHHHHHHHHHHTTTTTCSEEEEE
T ss_pred cEEEEECcH--HHHHHHHHHHHHHHHcCCCEEEEEEccc--CCHHHHHHHHHHHHhCCCcEEEEE
Confidence 577777765 3667778888888899998876555543 467888888876654333334433
No 82
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=43.09 E-value=1e+02 Score=28.07 Aligned_cols=65 Identities=9% Similarity=0.182 Sum_probs=44.1
Q ss_pred CCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 015559 105 KQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV 173 (404)
Q Consensus 105 ~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v 173 (404)
+|-..+.|+.||. .|-.-..++++.|++.||..++--.|.. -..+.+..|++.....+-.-||.+
T Consensus 11 ~~~~~V~IimGS~--SD~~v~~~a~~~L~~~Gi~~dv~V~SaH--R~p~~l~~~~~~a~~~g~~ViIa~ 75 (183)
T 1o4v_A 11 HHVPRVGIIMGSD--SDLPVMKQAAEILEEFGIDYEITIVSAH--RTPDRMFEYAKNAEERGIEVIIAG 75 (183)
T ss_dssp ---CEEEEEESCG--GGHHHHHHHHHHHHHTTCEEEEEECCTT--TCHHHHHHHHHHTTTTTCCEEEEE
T ss_pred cCCCeEEEEeccH--HHHHHHHHHHHHHHHcCCCeEEEEEccc--CCHHHHHHHHHHHHhCCCcEEEEe
Confidence 4555677777765 4677788999999999999777666653 467888888876654333344444
No 83
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=42.83 E-value=54 Score=30.63 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=38.3
Q ss_pred EEEEEEcCCC-CC-ChhHHHHHHHHHHh----CCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 109 RIIVFVGSPI-KH-EKKVLEMIGRKLKK----NSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 109 RIVlFvgSp~-~~-d~~~l~~~ak~LKk----nnI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
.+|+|+|... .. ....+.++++++++ .++.+.|||=|... -.+.|+.++...+
T Consensus 252 ~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~--~~~~l~~~~~~~~ 310 (439)
T 3fro_A 252 VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPE--LEGWARSLEEKHG 310 (439)
T ss_dssp EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHH--HHHHHHHHHHHCT
T ss_pred cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChh--HHHHHHHHHhhcC
Confidence 7899999876 43 67788899999988 57777777765432 1257788776653
No 84
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=41.73 E-value=90 Score=28.15 Aligned_cols=64 Identities=6% Similarity=0.072 Sum_probs=44.2
Q ss_pred CCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 015559 106 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV 173 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v 173 (404)
-+.++.|+.||. .|-.-+.++++.|++.||..++--.|.. -..+.+.+|.+.....+-.-||.+
T Consensus 10 ~~~~V~IimGS~--SD~~v~~~a~~~L~~~Gi~~dv~V~SaH--R~p~~l~~~~~~a~~~g~~ViIa~ 73 (170)
T 1xmp_A 10 MKSLVGVIMGST--SDWETMKYACDILDELNIPYEKKVVSAH--RTPDYMFEYAETARERGLKVIIAG 73 (170)
T ss_dssp -CCSEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCTT--TSHHHHHHHHHHTTTTTCCEEEEE
T ss_pred CCCcEEEEECcH--HHHHHHHHHHHHHHHcCCCEEEEEEecc--CCHHHHHHHHHHHHhCCCcEEEEE
Confidence 344577777765 4677788999999999999876555543 478889999876654333444444
No 85
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=41.60 E-value=30 Score=31.80 Aligned_cols=51 Identities=10% Similarity=0.063 Sum_probs=33.9
Q ss_pred CeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 107 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 107 ~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
..++|+|+|.... .+.+..+++.+++-++.+.|||-|... +.++.+++..+
T Consensus 161 ~~~~i~~vG~~~~--~Kg~~~li~a~~~~~~~l~i~G~g~~~----~~l~~~~~~~~ 211 (342)
T 2iuy_A 161 KEDFLLFMGRVSP--HKGALEAAAFAHACGRRLVLAGPAWEP----EYFDEITRRYG 211 (342)
T ss_dssp CCSCEEEESCCCG--GGTHHHHHHHHHHHTCCEEEESCCCCH----HHHHHHHHHHT
T ss_pred CCCEEEEEecccc--ccCHHHHHHHHHhcCcEEEEEeCcccH----HHHHHHHHHhC
Confidence 3457899987653 344444444444448999999877533 57888887764
No 86
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=41.45 E-value=38 Score=30.18 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=37.3
Q ss_pred CCCCeEEEEEEcCCCCC------ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 015559 104 KKQQQRIIVFVGSPIKH------EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 104 k~~~~RIVlFvgSp~~~------d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~ 175 (404)
.+...+|+++.|||--. +..-+..+++.+++.+..|.+|-+.... + ++.+.+.+..-| ++|.+-|
T Consensus 9 ~~~~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~-d----~~~~~~~l~~AD--~iV~~~P 79 (204)
T 2amj_A 9 HHGSSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDY-D----VKAEVQNFLWAD--VVIWQMP 79 (204)
T ss_dssp ---CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCC-C----HHHHHHHHHHCS--EEEEEEE
T ss_pred ccCCcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccc-c----HHHHHHHHHhCC--EEEEECC
Confidence 45678999999999832 1222334566677779999999998744 2 334444443222 5555544
No 87
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=41.29 E-value=1.1e+02 Score=27.13 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=34.5
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcC
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN 164 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~ 164 (404)
++.|+.||. .|-....++++.|++.||..++--.|. |-..+.+..|++....
T Consensus 4 ~V~Iimgs~--SD~~v~~~a~~~l~~~gi~~ev~V~sa--HR~p~~~~~~~~~a~~ 55 (159)
T 3rg8_A 4 LVIILMGSS--SDMGHAEKIASELKTFGIEYAIRIGSA--HKTAEHVVSMLKEYEA 55 (159)
T ss_dssp EEEEEESSG--GGHHHHHHHHHHHHHTTCEEEEEECCT--TTCHHHHHHHHHHHHT
T ss_pred eEEEEECcH--HHHHHHHHHHHHHHHcCCCEEEEEEcc--cCCHHHHHHHHHHhhh
Confidence 566666654 356667778888888888877544443 2467777777766654
No 88
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=40.84 E-value=29 Score=29.72 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=31.9
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHh-CCceEEEEEeCCCC
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKK-NSVALDIVNFGEDD 148 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKk-nnI~VdiI~fG~e~ 148 (404)
++|+|+.+|+...+..-...+++.+++ .++.|+++.+....
T Consensus 2 mkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~ 43 (198)
T 3b6i_A 2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETM 43 (198)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCS
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccC
Confidence 378888899754455566677888888 89999999998763
No 89
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=40.27 E-value=1.6e+02 Score=28.34 Aligned_cols=79 Identities=9% Similarity=0.021 Sum_probs=49.2
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCCchhhhhhh
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLL 185 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~~lLsD~l~ 185 (404)
...+|+|+|..... ....++++++++++.++.+.|||-|... -.+.|+.++...+ ++-++ ........+.+.+.
T Consensus 291 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~--~~~~l~~~~~~~~--~~v~~-~~g~~~~~~~~~~~ 365 (485)
T 2qzs_A 291 KVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPV--LQEGFLAAAAEYP--GQVGV-QIGYHEAFSHRIMG 365 (485)
T ss_dssp TSCEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEEECHH--HHHHHHHHHHHST--TTEEE-EESCCHHHHHHHHH
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeCCchH--HHHHHHHHHHhCC--CcEEE-eCCCCHHHHHHHHH
Confidence 45688899876543 5667888888888889999999988532 1357788877652 33221 22222233455555
Q ss_pred cCccc
Q 015559 186 STPIF 190 (404)
Q Consensus 186 sspi~ 190 (404)
.+.|+
T Consensus 366 ~adv~ 370 (485)
T 2qzs_A 366 GADVI 370 (485)
T ss_dssp HCSEE
T ss_pred hCCEE
Confidence 55543
No 90
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=38.90 E-value=54 Score=31.16 Aligned_cols=55 Identities=20% Similarity=0.140 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhcCC---CCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 90 GIQVAQLALKHRQN---KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 90 gL~iA~lALKhr~~---k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
|..+|...+++.+. .+...||+||.| +.+ +-+|=+.+|+.|+..|+.|.|+-++.
T Consensus 59 G~ava~~i~~~~~~~~~~~~~~~VlVlcG-~GN-NGGDGlv~AR~L~~~G~~V~V~~~~~ 116 (265)
T 2o8n_A 59 GLSCATAIAKAYPPTSMSKSPPTVLVICG-PGN-NGGDGLVCARHLKLFGYQPTIYYPKR 116 (265)
T ss_dssp HHHHHHHHHHHSCGGGSSSSSCEEEEEEC-SSH-HHHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred HHHHHHHHHHHcccccccCCCCeEEEEEC-CCC-CHHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 44555555554321 112258777766 432 46788999999999999999987775
No 91
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=38.48 E-value=18 Score=28.07 Aligned_cols=13 Identities=8% Similarity=0.089 Sum_probs=7.9
Q ss_pred CCCChHHHHHHHH
Q 015559 319 VAEDDPELALALQ 331 (404)
Q Consensus 319 ~~~ee~~ia~a~~ 331 (404)
..+++|.++++|+
T Consensus 6 ~e~~ee~~~~~m~ 18 (71)
T 2llw_A 6 NETPEETYQRAMK 18 (71)
T ss_dssp CSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHhc
Confidence 3456666666664
No 92
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=37.97 E-value=1.2e+02 Score=28.03 Aligned_cols=49 Identities=24% Similarity=0.313 Sum_probs=32.6
Q ss_pred EEEEEEcCC-CCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHh
Q 015559 109 RIIVFVGSP-IKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAV 162 (404)
Q Consensus 109 RIVlFvgSp-~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~L~~~~~~v 162 (404)
.+|+|+|.. ... ....++++++++++. ++.+.|||-|.. +.|+.+++..
T Consensus 209 ~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~~~~-----~~l~~~~~~~ 261 (406)
T 2gek_A 209 RTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDE-----DELREQAGDL 261 (406)
T ss_dssp CEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEEEEESCSCH-----HHHHHHTGGG
T ss_pred eEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEEEEEcCCcH-----HHHHHHHHhc
Confidence 578898877 432 566778888888775 566666665532 4666666544
No 93
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=37.77 E-value=1e+02 Score=28.00 Aligned_cols=62 Identities=6% Similarity=0.124 Sum_probs=42.7
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV 173 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v 173 (404)
.++.|+.||. .|-....++++.|++.||..++--.|.+ -..+.+..|.+.....+-.-||.+
T Consensus 22 ~~V~IimGS~--SD~~v~~~a~~~L~~~Gi~~dv~V~SaH--R~p~~l~~~~~~a~~~g~~ViIa~ 83 (182)
T 1u11_A 22 PVVGIIMGSQ--SDWETMRHADALLTELEIPHETLIVSAH--RTPDRLADYARTAAERGLNVIIAG 83 (182)
T ss_dssp CSEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCTT--TCHHHHHHHHHHTTTTTCCEEEEE
T ss_pred CEEEEEECcH--HHHHHHHHHHHHHHHcCCCeEEEEEccc--CCHHHHHHHHHHHHhCCCcEEEEe
Confidence 3577777765 3677788889999999999776555543 467888888876654333344444
No 94
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=37.61 E-value=87 Score=28.21 Aligned_cols=50 Identities=10% Similarity=0.186 Sum_probs=24.7
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~v 162 (404)
++.|+.||. .|-....++++.|++.||.+++--.|.+ ...+.+..|++..
T Consensus 8 ~V~IimgS~--SD~~v~~~a~~~l~~~gi~~ev~V~SaH--R~p~~~~~~~~~a 57 (169)
T 3trh_A 8 FVAILMGSD--SDLSTMETAFTELKSLGIPFEAHILSAH--RTPKETVEFVENA 57 (169)
T ss_dssp EEEEEESCG--GGHHHHHHHHHHHHHTTCCEEEEECCTT--TSHHHHHHHHHHH
T ss_pred cEEEEECcH--HhHHHHHHHHHHHHHcCCCEEEEEEccc--CCHHHHHHHHHHH
Confidence 445555543 2444555555566666666554333322 3455555555443
No 95
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=37.34 E-value=76 Score=28.72 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=27.7
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
++.|+.||. .|-....++++.|++.||..++--.|.+ -..+.+..|++...
T Consensus 9 ~V~IimgS~--SD~~v~~~a~~~L~~~gi~~ev~V~SaH--R~p~~~~~~~~~a~ 59 (174)
T 3lp6_A 9 RVGVIMGSD--SDWPVMADAAAALAEFDIPAEVRVVSAH--RTPEAMFSYARGAA 59 (174)
T ss_dssp SEEEEESCG--GGHHHHHHHHHHHHHTTCCEEEEECCTT--TCHHHHHHHHHHHH
T ss_pred eEEEEECcH--HhHHHHHHHHHHHHHcCCCEEEEEECCC--CCHHHHHHHHHHHH
Confidence 455555544 2455556666666666666554444432 35566666655443
No 96
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=36.62 E-value=42 Score=28.98 Aligned_cols=41 Identities=12% Similarity=0.297 Sum_probs=31.0
Q ss_pred CeEEEEEEcCCCCCChhHHHHHHHHHHh-CCceEEEEEeCCC
Q 015559 107 QQRIIVFVGSPIKHEKKVLEMIGRKLKK-NSVALDIVNFGED 147 (404)
Q Consensus 107 ~~RIVlFvgSp~~~d~~~l~~~ak~LKk-nnI~VdiI~fG~e 147 (404)
-++|+|+.+|+...+..-...+++.+++ .++.|.++.+...
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~ 45 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEA 45 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTC
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhC
Confidence 3578888899754456666677888888 8999988887653
No 97
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=35.55 E-value=45 Score=28.73 Aligned_cols=33 Identities=9% Similarity=0.316 Sum_probs=24.6
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhC-CceEEEEEeCC
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKN-SVALDIVNFGE 146 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKkn-nI~VdiI~fG~ 146 (404)
-.+||++| + ++..-++++|+.. |++|.++|+-.
T Consensus 110 d~~vLvSg-D-----~DF~plv~~lr~~~G~~V~v~g~~~ 143 (165)
T 2qip_A 110 DRVILVSG-D-----GDFSLLVERIQQRYNKKVTVYGVPR 143 (165)
T ss_dssp SEEEEECC-C-----GGGHHHHHHHHHHHCCEEEEEECGG
T ss_pred CEEEEEEC-C-----hhHHHHHHHHHHHcCcEEEEEeCCC
Confidence 35565543 3 4788999999995 99998888743
No 98
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=35.48 E-value=80 Score=25.60 Aligned_cols=55 Identities=16% Similarity=0.350 Sum_probs=39.5
Q ss_pred CCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 105 KQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 105 ~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
...+.+|+||.+. ...+....-..+||++|.-|++---... +=+...+.|.....
T Consensus 49 dngkplvvfvnga---sqndvnefqneakkegvsydvlkstdpe-eltqrvreflktag 103 (112)
T 2lnd_A 49 DNGKPLVVFVNGA---SQNDVNEFQNEAKKEGVSYDVLKSTDPE-ELTQRVREFLKTAG 103 (112)
T ss_dssp TCCSCEEEEECSC---CHHHHHHHHHHHHHHTCEEEEEECCCHH-HHHHHHHHHHHHTT
T ss_pred hcCCeEEEEecCc---ccccHHHHHHHHHhcCcchhhhccCCHH-HHHHHHHHHHHhcc
Confidence 3566789998765 3667777788889999999988765544 44566777776553
No 99
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=34.52 E-value=38 Score=29.53 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=29.2
Q ss_pred eEEEEEEcCCCCC--ChhHHHHHHHH-HHhCCceEEEEEeCCC
Q 015559 108 QRIIVFVGSPIKH--EKKVLEMIGRK-LKKNSVALDIVNFGED 147 (404)
Q Consensus 108 ~RIVlFvgSp~~~--d~~~l~~~ak~-LKknnI~VdiI~fG~e 147 (404)
++|++|.||+... +..-...+++. ++..++.|.+|.+...
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~ 45 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDL 45 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGS
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEcccc
Confidence 4789999998532 34444556677 7888999999998763
No 100
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=34.09 E-value=2.1e+02 Score=25.36 Aligned_cols=112 Identities=4% Similarity=0.005 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHHHh-ccCCcCCeEEEEEecCCccEEEECCCCC-HHHHHHHhcC--c---c----ccCCCcHHHHH
Q 015559 23 PSRFQAQTEAANLICGAK-TQLNPENTVGVMTMAGKGVRVLVTPTSD-LGKILACMHG--L---E----IGGELNLAAGI 91 (404)
Q Consensus 23 PtRl~Aq~dAv~~fv~~k-~~~NPesqVGLVtmag~~a~VLvtlT~D-~~kils~L~~--l---~----~~G~~sL~~gL 91 (404)
++-..+...+++.+++.. .+-+-..+||++..+.... +.+.+ ..-++.+|.. + + ..+..+...+.
T Consensus 108 ~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~----~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 183 (306)
T 8abp_A 108 LAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL----DTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAF 183 (306)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTS----HHHHHHHHHHHHHHHHHTCCGGGEEEEECSSSSHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCC----hHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCChHHHH
Confidence 578888888999888652 2222233788887544320 00000 1113333332 1 1 14667788898
Q ss_pred HHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCc---eEEEEEeCC
Q 015559 92 QVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSV---ALDIVNFGE 146 (404)
Q Consensus 92 ~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI---~VdiI~fG~ 146 (404)
+.+...|...+ ...-|+||.. +..-..-+.+.|++.|+ .|.||||+.
T Consensus 184 ~~~~~~l~~~~---~~~a~~i~~~-----nD~~A~g~~~al~~~g~~v~di~vvG~D~ 233 (306)
T 8abp_A 184 DAANSMLVQHP---EVKHWLIVGM-----NDSTVLGGVRATEGQGFKAADIIGIGING 233 (306)
T ss_dssp HHHHHHHTTCT---TCSEEEEECS-----SHHHHHHHHHHHHHTTCCGGGEEEEEESS
T ss_pred HHHHHHHHhCC---CCceEEEEeC-----CcHHHHHHHHHHHHcCCCCCceEEEEeCc
Confidence 88888886532 2223345533 23445678888999999 599999975
No 101
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=34.00 E-value=2e+02 Score=23.76 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=31.3
Q ss_pred EEEEEEcCCC-CC-ChhHHHHHHHHHH--hC--CceEEEEEeCCCCCCcHHHHHHHHHHh
Q 015559 109 RIIVFVGSPI-KH-EKKVLEMIGRKLK--KN--SVALDIVNFGEDDEGNTEKLEALLAAV 162 (404)
Q Consensus 109 RIVlFvgSp~-~~-d~~~l~~~ak~LK--kn--nI~VdiI~fG~e~~~n~~~L~~~~~~v 162 (404)
.+|+|+|... .. ....+.+++++++ +. ++.+.+||-|... ..+.++.++...
T Consensus 37 ~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~--~~~~l~~~~~~~ 94 (200)
T 2bfw_A 37 VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPE--LEGWARSLEEKH 94 (200)
T ss_dssp EEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHH--HHHHHHHHHHHC
T ss_pred CEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChH--HHHHHHHHHHhc
Confidence 4777888765 32 5667777888875 43 5666666554411 234666666654
No 102
>2lta_A De novo designed protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=40.23 E-value=8.6 Score=31.23 Aligned_cols=48 Identities=27% Similarity=0.478 Sum_probs=33.2
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
.+||+++.|. .-.+..+|++.|.++..|+|+--.... ..|+.-+.++.
T Consensus 3 skiiviissd----dttleelarkikdeglevyillkdkde----krleekiqklk 50 (110)
T 2lta_A 3 SKIIVIISSD----DTTLEELARKIKDEGLEVYILLKDKDE----KRLEEKIQKLK 50 (110)
Confidence 4677776665 345889999999999999987654333 35555555554
No 103
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=33.85 E-value=46 Score=30.36 Aligned_cols=41 Identities=2% Similarity=0.141 Sum_probs=31.6
Q ss_pred CeEEEEEEcCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 107 QQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 107 ~~RIVlFvgSp~~~--d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
.+||+++.|||... +..-+..+++.|++.+..|.+|.+.+.
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~ 43 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAM 43 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTT
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhc
Confidence 36899999999864 233345668888888999999999763
No 104
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=33.14 E-value=1.3e+02 Score=24.21 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=30.6
Q ss_pred eEEEEEEcCCCC----CChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 108 QRIIVFVGSPIK----HEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 108 ~RIVlFvgSp~~----~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
.+.||+=.+.++ ..-+.|..+.+++++.|+.+.+++.....
T Consensus 48 ~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 92 (130)
T 2kln_A 48 VEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQDL 92 (130)
T ss_dssp CEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCSSHH
T ss_pred ceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 355666556554 24678899999999999999999886543
No 105
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=33.00 E-value=49 Score=30.72 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=43.7
Q ss_pred CCCeEEEEEEcCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCCCCc-----HHHHHHHHHHhcCCCCcEEEEeCC
Q 015559 105 KQQQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDDEGN-----TEKLEALLAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 105 ~~~~RIVlFvgSp~~~--d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n-----~~~L~~~~~~vn~~d~Shlv~vp~ 175 (404)
...++|++|.||+-.. +..-+..+++.+++.++.|.+|.+.+-...+ .+-+..+++++..-| .+|.+-|
T Consensus 32 ~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD--~iI~~sP 107 (247)
T 2q62_A 32 THRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSE--GQVWVSP 107 (247)
T ss_dssp CSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCS--EEEEEEE
T ss_pred CCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCC--EEEEEeC
Confidence 3557899999999753 3333445677888889999999987632111 123566666665333 4555444
No 106
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=31.67 E-value=1.7e+02 Score=26.60 Aligned_cols=60 Identities=7% Similarity=0.085 Sum_probs=37.7
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 015559 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV 173 (404)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v 173 (404)
+-|+.||. .|-.-+.++++.|++.+|..++--.+.. .+.+++..|++.....+-.-+|.+
T Consensus 25 V~IimGS~--SD~~v~~~a~~~L~~~gI~~e~~V~SAH--Rtp~~l~~~~~~a~~~g~~ViIa~ 84 (181)
T 4b4k_A 25 VGVIMGST--SDWETMKYACDILDELNIPYEKKVVSAH--RTPDYMFEYAETARERGLKVIIAG 84 (181)
T ss_dssp EEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCTT--TSHHHHHHHHHHTTTTTCCEEEEE
T ss_pred EEEEECCH--hHHHHHHHHHHHHHHcCCCeeEEEEccc--cChHHHHHHHHHHHhcCceEEEEe
Confidence 55566654 3566677788888888888666555543 467777777776654443344444
No 107
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis}
Probab=31.30 E-value=3.4e+02 Score=25.67 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=13.3
Q ss_pred cceEEEEEeCChhhhCCCCCC
Q 015559 3 LEATLICIDNSEWMRNGDYAP 23 (404)
Q Consensus 3 lEa~vIvIDnSesMrngD~~P 23 (404)
.+.+||+||+.. |..||.|
T Consensus 74 ~~~IvV~i~~~~--R~~dytp 92 (331)
T 3gff_A 74 PKVIIVGIHNTN--RMRDYTP 92 (331)
T ss_dssp CCCEEEEECCSS--HHHHSCS
T ss_pred CCEEEEEECCCC--cccccCC
Confidence 467899999854 5556665
No 108
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=31.06 E-value=2.5e+02 Score=28.08 Aligned_cols=63 Identities=16% Similarity=0.236 Sum_probs=43.9
Q ss_pred CCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCCh--------------h--------HHHHHHHHHHhCCceEE
Q 015559 83 GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEK--------------K--------VLEMIGRKLKKNSVALD 140 (404)
Q Consensus 83 G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~--------------~--------~l~~~ak~LKknnI~Vd 140 (404)
|..++...+.++..|-++ .-+-+|-|-.|+.=.|| . ....++++||++++.|+
T Consensus 84 g~~d~~~~~~~a~~Ak~~-----GLkVlldfHysD~WadPg~Q~~P~aW~~~~~~~l~~~~~~yt~~~l~~l~~~g~~~~ 158 (399)
T 1ur4_A 84 GNNDLEKAIQIGKRATAN-----GMKLLADFHYSDFWADPAKQKAPKAWANLNFEDKKTALYQYTKQSLKAMKAAGIDIG 158 (399)
T ss_dssp TCCCHHHHHHHHHHHHHT-----TCEEEEEECSSSSCCSSSCCCCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCHHHHHHHHHHHHHC-----CCEEEEEeccCCccCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 557888888888888654 33455666666542232 1 22356789999999999
Q ss_pred EEEeCCCCCCc
Q 015559 141 IVNFGEDDEGN 151 (404)
Q Consensus 141 iI~fG~e~~~n 151 (404)
+|.+|.|. .+
T Consensus 159 ~vqvGNEi-~~ 168 (399)
T 1ur4_A 159 MVQVGNET-NG 168 (399)
T ss_dssp EEEESSSC-SS
T ss_pred EEEEcccc-cc
Confidence 99999988 44
No 109
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=30.48 E-value=46 Score=28.59 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=30.3
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
++|+++.+| ...+..-...+++.+++.++.|.+|.+...
T Consensus 5 mkilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 43 (199)
T 2zki_A 5 PNILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRVRET 43 (199)
T ss_dssp CEEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred cEEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEehhHh
Confidence 588888899 333555556778888888999999998765
No 110
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=29.45 E-value=2.3e+02 Score=23.36 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=33.4
Q ss_pred EEEEEEcCCCC--C--ChhHHHHHHHHHHhCCc----eEEEEEeCCCCCCcHHHHHHHHHHhc
Q 015559 109 RIIVFVGSPIK--H--EKKVLEMIGRKLKKNSV----ALDIVNFGEDDEGNTEKLEALLAAVN 163 (404)
Q Consensus 109 RIVlFvgSp~~--~--d~~~l~~~ak~LKknnI----~VdiI~fG~e~~~n~~~L~~~~~~vn 163 (404)
.+||++.++-. | .-..+.++.+++++.+| +|.+|++.... .+.+.++.|++.-+
T Consensus 61 ~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~-~~~~~~~~~~~~~~ 122 (183)
T 3lwa_A 61 VVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRD-YSRDIAQDFVTDNG 122 (183)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSC-CCHHHHHHHHHHTT
T ss_pred EEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCC-CCHHHHHHHHHHcC
Confidence 44554444432 2 34467788889998888 44555555444 35689999998764
No 111
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=28.99 E-value=56 Score=31.21 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=44.6
Q ss_pred CCeEEEEEEcCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCCCC------cHHHHHHHHHHhcCCCCcEEEEeCC
Q 015559 106 QQQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDDEG------NTEKLEALLAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~--d~~~l~~~ak~LKknnI~VdiI~fG~e~~~------n~~~L~~~~~~vn~~d~Shlv~vp~ 175 (404)
+.++|++|.||+-.. +..-+..+++.+++.++.|.+|.++..... ..+.+..+++++..-| .+|.+-|
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~AD--giV~aSP 132 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSE--GQVWCSP 132 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCS--EEEEEEE
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCC--eEEEEcC
Confidence 567999999999753 333445578888888999999999873211 1234666777665433 4554443
No 112
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=28.66 E-value=1.1e+02 Score=24.29 Aligned_cols=25 Identities=12% Similarity=0.313 Sum_probs=22.1
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEeC
Q 015559 121 EKKVLEMIGRKLKKNSVALDIVNFG 145 (404)
Q Consensus 121 d~~~l~~~ak~LKknnI~VdiI~fG 145 (404)
++..+.++...|++.+|.|.+|++|
T Consensus 74 ~~~~~~~ai~~L~~~~v~vEvlg~~ 98 (98)
T 3ced_A 74 SSVDFGKFEKELIERQVKMEVLRHG 98 (98)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEecCC
Confidence 4667889999999999999999876
No 113
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=28.49 E-value=1.2e+02 Score=27.75 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChh------------HH----HHHHHHHHhCCceEEEEEeCCCC
Q 015559 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKK------------VL----EMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~------------~l----~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
+++...+.+.+.++++.. +....| ||+++|.....+. -+ ..+++.+++.||+|.+|.-|.-.
T Consensus 123 vN~~g~~~l~~~~~~~m~-~~~~g~-iv~isS~~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v 200 (285)
T 3sc4_A 123 IQVRGTYAVSQSCIPHMK-GRDNPH-ILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTV 200 (285)
T ss_dssp HHHHHHHHHHHHHGGGTT-TSSSCE-EEECCCCCCCSGGGSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCB
T ss_pred HHhHHHHHHHHHHHHHHH-HcCCcE-EEEECChhhccCCCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCcc
Confidence 456667778888887752 223345 5555664432111 11 24556677789999999999533
No 114
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27
Probab=28.10 E-value=2.5e+02 Score=22.97 Aligned_cols=48 Identities=13% Similarity=-0.019 Sum_probs=27.7
Q ss_pred HHhC-CceEEEEEeCCCCCCcHHHHHHHHHHhc-CCC--CcEEEEeCCCCch
Q 015559 132 LKKN-SVALDIVNFGEDDEGNTEKLEALLAAVN-NND--SSHLVHVPPGPNA 179 (404)
Q Consensus 132 LKkn-nI~VdiI~fG~e~~~n~~~L~~~~~~vn-~~d--~Shlv~vp~g~~l 179 (404)
+++- +++|-+|.=..+.....+-.+.+.+.+. ..+ +..+++++.+.|.
T Consensus 167 ~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 218 (238)
T 1ufo_A 167 GEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHT 218 (238)
T ss_dssp GGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCSS
T ss_pred hhhccCCcEEEEECCCCCccCcHHHHHHHHHHhhcCCCCceEEEEeCCCCcc
Confidence 3444 6777776543332233456777777775 433 6677777764553
No 115
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=27.91 E-value=67 Score=26.38 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=28.4
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (404)
+|+|+.+|....++.-...+++.|...++.|.++.
T Consensus 3 ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~ 37 (147)
T 2hna_A 3 DITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLH 37 (147)
T ss_dssp SEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEEECCchHHHHHHHHHHHHHHHCCCceEEec
Confidence 56777788877788888899999999888887764
No 116
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=27.79 E-value=85 Score=32.37 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 90 GIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 90 gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
|..+|...+++.+ ....+||+||.| +. .+-+|=+.+|+.|+..+..|.|+-++..
T Consensus 36 g~a~a~~i~~~~~-~~~~~~v~VlcG-~G-NNGGDGlv~AR~L~~~G~~V~v~~~~~~ 90 (502)
T 3rss_A 36 GISVVLAMEEELG-NLSDYRFLVLCG-GG-NNGGDGFVVARNLLGVVKDVLVVFLGKK 90 (502)
T ss_dssp HHHHHHHHHHHHS-CCTTCEEEEEEC-SS-HHHHHHHHHHHHHTTTSSEEEEEECCSS
T ss_pred HHHHHHHHHHhcC-ccCCCEEEEEEC-CC-CCHHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 4555555555432 224567777765 43 3467889999999999999999999876
No 117
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=27.28 E-value=79 Score=27.45 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=36.3
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~v 162 (404)
+-|.|.|+.-...++.+.++++.+++.++.|.+..=|... ...+.++.|.+.+
T Consensus 71 ~~i~~~GGEP~l~~~~l~~l~~~~~~~~~~i~i~Tng~~~-~~~~~~~~l~~~~ 123 (245)
T 3c8f_A 71 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVR-RYDPVIDELLEVT 123 (245)
T ss_dssp CEEEEEESCGGGGHHHHHHHHHHHHTTTCCEEEEECCCCC-CCCHHHHHHHHTC
T ss_pred CeEEEECCCcCCCHHHHHHHHHHHHHcCCcEEEEeCCCcC-cCHHHHHHHHHhC
Confidence 3466777554455655789999999999988887767541 1346777777543
No 118
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=27.09 E-value=59 Score=29.99 Aligned_cols=58 Identities=9% Similarity=0.173 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 87 LAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 87 L~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
+..|+..+...++.. ...+++|+||.||-....+.-...+++.+ ..++.+.++.+.+-
T Consensus 22 ~~~av~~~~~l~~~~--~~~~~kv~IlYgS~tGnte~~A~~La~~l-~~g~~v~v~~l~~~ 79 (219)
T 3hr4_A 22 LVKAVLFACMLMRKT--MASRVRVTILFATETGKSEALAWDLGALF-SCAFNPKVVCMDKY 79 (219)
T ss_dssp HHHHHHHHHHHHHHH--HHTSCEEEEEEECSSSHHHHHHHHHHHHH-TTTSEEEEEEGGGC
T ss_pred HHHHHHHHHHHHHHH--HhcCCcEEEEEECCchHHHHHHHHHHHHH-HcCCCeEEEEcccC
Confidence 344555555433332 33667888998988766777777778877 57899999988764
No 119
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=26.70 E-value=37 Score=27.46 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=30.4
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
|+|+.+|....++.-...+++.|++.++.|+++.+....
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~ 39 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVN 39 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCC
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCC
Confidence 456667776566777788899999999999999987644
No 120
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=26.24 E-value=1.7e+02 Score=28.93 Aligned_cols=114 Identities=12% Similarity=0.072 Sum_probs=57.4
Q ss_pred EEEEeCChhhhCCCCCCC----HHHHHHHHHHHHHHHhccCCcCCeEE--E--EEecCCccEEE--ECCCCCHHHHHHHh
Q 015559 7 LICIDNSEWMRNGDYAPS----RFQAQTEAANLICGAKTQLNPENTVG--V--MTMAGKGVRVL--VTPTSDLGKILACM 76 (404)
Q Consensus 7 vIvIDnSesMrngD~~Pt----Rl~Aq~dAv~~fv~~k~~~NPesqVG--L--Vtmag~~a~VL--vtlT~D~~kils~L 76 (404)
+|+||.. |+ ||-..-+.+..+++.++...-....| + -.+-+.....+ +++.. ..++..|
T Consensus 127 ~VIvDtp---------Ptg~tLrlL~lP~~l~~~l~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~--d~~~~~l 195 (374)
T 3igf_A 127 TIVYDGT---------GDAFTLRMLGLPESLSWYVRRFRQLFVNSDLGKTIAESPLIQPLISSFFNVNWTA--DNFAQPT 195 (374)
T ss_dssp EEEEECC---------CSHHHHHHHTHHHHHHHHHHHTTSCC-------------------------------------C
T ss_pred EEEEeCC---------CChHHhhhhhhhHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhccCCCch--HHHHHHH
Confidence 6777776 65 88888888888998876655443322 1 01111000000 00000 1111111
Q ss_pred cCccccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 015559 77 HGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 144 (404)
Q Consensus 77 ~~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~f 144 (404)
. .+..-++-+...|+. ..+.-+++|..|-...-.+...+.+.|++.||+|.-|-+
T Consensus 196 ~--------~~~~~~~~~~~~L~d-----p~~t~~vlVt~pe~~sl~ea~r~~~~L~~~gi~v~gvVv 250 (374)
T 3igf_A 196 N--------QVNNFLDKGKEALAD-----PKRVAAFLVTTADPLEVVSVRYLWGSAQQIGLTIGGVIQ 250 (374)
T ss_dssp H--------HHHHHHHHHHHHHHC-----TTTEEEEEEECSCHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred H--------HHHHHHHHHHHHHhc-----cCCeEEEEEECCCccHHHHHHHHHHHHHHcCCCccEEEE
Confidence 1 233444555566654 222335556667555667888999999999999985544
No 121
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=26.01 E-value=66 Score=25.55 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=27.7
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
|+|+.+|....+..-...+++.++..++.|.++.+...
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~ 39 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDT 39 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSC
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccC
Confidence 45566777555566667778888888999999887653
No 122
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=25.93 E-value=34 Score=22.86 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=18.8
Q ss_pred ChhHHHHHHHHHHhCCceEEE
Q 015559 121 EKKVLEMIGRKLKKNSVALDI 141 (404)
Q Consensus 121 d~~~l~~~ak~LKknnI~Vdi 141 (404)
.|.++.++-+.+||.||+|.+
T Consensus 13 tpeelkklkeeakkanirvtf 33 (36)
T 2ki0_A 13 TPEELKKLKEEAKKANIRVTF 33 (36)
T ss_dssp CHHHHHHHHHHHHHHCCCCCB
T ss_pred CHHHHHHHHHHHHhccEEEEe
Confidence 588999999999999999864
No 123
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=25.91 E-value=43 Score=29.79 Aligned_cols=41 Identities=10% Similarity=0.188 Sum_probs=33.1
Q ss_pred CCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 106 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
..++|+|+.+|.....++-...+++.|...++.|.++.+..
T Consensus 20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~ 60 (191)
T 1bvy_F 20 HNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDS 60 (191)
T ss_dssp -CCCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGG
T ss_pred CCCeEEEEEECCChHHHHHHHHHHHHHHhCCCceEEeeHHH
Confidence 45678888899877778888888999998899999888764
No 124
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=25.79 E-value=1.6e+02 Score=26.59 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChh-----------------HHHHHHHHHHhCCceEEEEEeCC
Q 015559 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKK-----------------VLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~-----------------~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
+++...+.+.+.++++.. +....| ||+++|.....+. -...+++.+...||+|.+|.-|.
T Consensus 120 vN~~g~~~l~~~~~~~m~-~~~~g~-iv~isS~~~~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~ 196 (274)
T 3e03_A 120 VNARGSFVCAQACLPHLL-QAPNPH-ILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRT 196 (274)
T ss_dssp HTHHHHHHHHHHHHHHHT-TSSSCE-EEECCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSB
T ss_pred HhhHhHHHHHHHHHHHHH-hcCCce-EEEECChHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCc
Confidence 466677777887777652 223345 5566665543331 11345677788899999999994
No 125
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=25.70 E-value=61 Score=27.60 Aligned_cols=40 Identities=5% Similarity=0.238 Sum_probs=29.1
Q ss_pred eEEEEEEcCCCC--C-ChhHHHHHHHHHHhCC--ceEEEEEeCCC
Q 015559 108 QRIIVFVGSPIK--H-EKKVLEMIGRKLKKNS--VALDIVNFGED 147 (404)
Q Consensus 108 ~RIVlFvgSp~~--~-d~~~l~~~ak~LKknn--I~VdiI~fG~e 147 (404)
++|+++.|||.. . +..-+..+++.+++.+ +.|.+|.+...
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~ 46 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAAN 46 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTS
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence 478999999973 3 3333445677788765 89999998764
No 126
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=24.95 E-value=3.9e+02 Score=24.55 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=45.9
Q ss_pred CCCCeEEEEEEcCCCCC-ChhHHHHHHHHHHhCC-ceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCCchh
Q 015559 104 KKQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNS-VALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNAL 180 (404)
Q Consensus 104 k~~~~RIVlFvgSp~~~-d~~~l~~~ak~LKknn-I~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~~lL 180 (404)
.....|+|+++.++... ..+.+..+-+.|++.+ |.|.++-.--..+ .+.+..+.+.+....+.-++.+--|+.+|
T Consensus 31 ~~~~d~ViLv~~~~~~~~~~~A~~~i~~~l~~~~~i~~e~~~vd~~df--~~~v~~i~~~i~~~~~~iivnlsGG~Ril 107 (244)
T 2wte_A 31 AQKEDSLVIVVPSPIVSGTRAAIESLRAQISRLNYPPPRIYEIEITDF--NLALSKILDIILTLPEPIISDLTMGMRMI 107 (244)
T ss_dssp CCTTSEEEEEEESSCCHHHHHHHHHHHHHHHHHTCCCEEEEEECCCSH--HHHHHHHHHHHTTSCSSEEEECSSSCHHH
T ss_pred CCCCCEEEEEeCCCcchhHHHHHHHHHHHHHHcCCCceEEEEECCccH--HHHHHHHHHHHhhcCCcEEEEecCCchHH
Confidence 34566899998877643 3444445555555554 5777776644222 34556666666654457778788888754
No 127
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=24.34 E-value=49 Score=31.00 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 015559 89 AGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 144 (404)
Q Consensus 89 ~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~f 144 (404)
+|..++-..+.. ..+||+ |+..|...+-.-+..+|+.|++.|-.|.+++-
T Consensus 9 ~~~~~g~~~~~~-----~~MRIL-~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~ 58 (400)
T 4amg_A 9 SGVDLGTENLYF-----QSMRAL-FITSPGLSHILPTVPLAQALRALGHEVRYATG 58 (400)
T ss_dssp -----------------CCCEEE-EECCSSHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred CCccCCcccCCC-----CCCeEE-EECCCchhHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 344444444433 457866 55666544444457999999999999998873
No 128
>4f8x_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA; 1.47A {Penicillium canescens}
Probab=23.93 E-value=1.5e+02 Score=28.99 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=40.5
Q ss_pred CCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCC---hhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 83 GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHE---KKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 83 G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d---~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
|.--+..+.+.|+.+|... ..+..++.+==.. +... ...++.+++.|+..||+||-|||=.+
T Consensus 151 G~~~i~~aF~~Ar~a~~~~--~dP~a~L~~NDYn-~e~~~~k~~~~~~lv~~l~~~gvpidgiG~Q~H 215 (335)
T 4f8x_A 151 GEEYFYLAFKYAQEALAQI--GANDVKLYYNDYG-IENPGTKSTAVLQLVSNLRKRGIRIDGVGLESH 215 (335)
T ss_dssp CTHHHHHHHHHHHHHHHHT--TCTTSEEEEEESS-CSSSSHHHHHHHHHHHHHHHTTCCCCEEEECCE
T ss_pred CHHHHHHHHHHHHHhcccc--CCCCcEEEEeccc-ccCCcHhHHHHHHHHHHHHHCCCCcceeeeeee
Confidence 5556778899999997542 1233333322121 2221 24688999999999999999998543
No 129
>1g91_A MPIF-1, myeloid progenitor inhibitory factor-1; chemokine, cytokine, CKB8, CCL23; NMR {Homo sapiens} SCOP: d.9.1.1 PDB: 2hcc_A
Probab=23.24 E-value=44 Score=25.92 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=17.5
Q ss_pred CCCCChHHHHHHHHhhccCCc
Q 015559 367 VDPEDPSVKDVLTSMQNQSEP 387 (404)
Q Consensus 367 vdp~~~~i~~~l~~~~~~~~~ 387 (404)
+||+++-||++|..|.++...
T Consensus 52 adP~~~WVq~~ik~l~~~~~~ 72 (77)
T 1g91_A 52 ANPSDKQVQVCMRMLKLDTRI 72 (77)
T ss_dssp ECTTCHHHHHHHHHHSSCTTT
T ss_pred CCCChHHHHHHHHHHHhhhhh
Confidence 499999999999999876543
No 130
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=23.23 E-value=2.6e+02 Score=22.73 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=40.0
Q ss_pred eEEEEEEcCCCCCC------hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCCCCc
Q 015559 108 QRIIVFVGSPIKHE------KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPN 178 (404)
Q Consensus 108 ~RIVlFvgSp~~~d------~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~g~~ 178 (404)
+| |+|+|..++.. ..-...+.+.|+..+..+.++++|-....-...+..|-..+.. ....+|+|--|.+
T Consensus 3 ~~-i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~-~~pd~vvi~~G~N 77 (185)
T 3hp4_A 3 NT-ILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDALLEQ-YEPTHVLIELGAN 77 (185)
T ss_dssp EE-EEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHHHHH-HCCSEEEEECCHH
T ss_pred Ce-EEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHHHhh-cCCCEEEEEeecc
Confidence 35 45556555431 2345677888998899999999888773223455555443321 1224555555543
No 131
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=22.64 E-value=5.3e+02 Score=24.89 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=57.9
Q ss_pred ceEEEEEeCChh--hhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhc----
Q 015559 4 EATLICIDNSEW--MRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMH---- 77 (404)
Q Consensus 4 Ea~vIvIDnSes--MrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~kils~L~---- 77 (404)
-++++|+|.|.+ +...|=.++||.-.......+++... ...+-||.++++. |.- -..+.
T Consensus 218 ~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~----~~~~piiLv~NK~---------DL~--~~ki~~~~l 282 (353)
T 1cip_A 218 TAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW----FTDTSIILFLNKK---------DLF--EEKIKKSPL 282 (353)
T ss_dssp SEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG----GTTSEEEEEEECH---------HHH--HHHHTTSCG
T ss_pred CEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc----ccCCcEEEEEECc---------Cch--hhhccccch
Confidence 479999999985 44556568999998888888877422 1236688888874 321 11221
Q ss_pred -Cc--cccCCCcHHHHHHHHHHHhhhcCCCC-CCeEEEEEEcCCC
Q 015559 78 -GL--EIGGELNLAAGIQVAQLALKHRQNKK-QQQRIIVFVGSPI 118 (404)
Q Consensus 78 -~l--~~~G~~sL~~gL~iA~lALKhr~~k~-~~~RIVlFvgSp~ 118 (404)
.. .-.|..+...+.+.+..-++.. ++. ....+-+|..|..
T Consensus 283 ~~~fp~~~g~~~~~e~~~~~~~~f~~l-~~~~~~~~~~~~etSA~ 326 (353)
T 1cip_A 283 TICYPEYAGSNTYEEAAAYIQCQFEDL-NKRKDTKEIYTHFTCAT 326 (353)
T ss_dssp GGTCTTCCSCSCHHHHHHHHHHHHHTT-CSCTTTCCEEEEECCTT
T ss_pred hhcccccCCCCCHHHHHHHHHHHHHHh-hcccCCCceEEEEEECc
Confidence 11 1135567777777776554432 221 1234444545544
No 132
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=22.44 E-value=1e+02 Score=28.98 Aligned_cols=42 Identities=5% Similarity=0.041 Sum_probs=32.2
Q ss_pred CCeEEEEEEcCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCC
Q 015559 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGED 147 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (404)
.++||++++.++... .+..+..+++.|++.|..|.++.+...
T Consensus 39 ~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~ 81 (416)
T 2x6q_A 39 KGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGP 81 (416)
T ss_dssp TTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred hccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 457888887765332 355677899999999999999988654
No 133
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=22.32 E-value=1.2e+02 Score=31.07 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=39.3
Q ss_pred CCeEEEEEEcCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 015559 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (404)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~v 162 (404)
....+|+|||..... ....++++.++|++.++.+-++|-|... ....++.+....
T Consensus 325 ~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~--~~~~~~~~~~~~ 380 (536)
T 3vue_A 325 RKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKK--FEKLLKSMEEKY 380 (536)
T ss_dssp TTSCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHH--HHHHHHHHHHHS
T ss_pred CCCcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCch--HHHHHHHHHhhc
Confidence 345589999976543 5667888899999999999999988754 234455555443
No 134
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=22.29 E-value=1.2e+02 Score=28.39 Aligned_cols=58 Identities=3% Similarity=0.013 Sum_probs=38.2
Q ss_pred CeEEEEEEcCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCc--HHHHHHHHHHhcC
Q 015559 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGN--TEKLEALLAAVNN 164 (404)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n--~~~L~~~~~~vn~ 164 (404)
...+|+|+|..... ....+.++.+++++. ++.+.|||-|...... .+.++.+++..+-
T Consensus 183 ~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l 245 (413)
T 3oy2_A 183 DDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGV 245 (413)
T ss_dssp TSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTC
T ss_pred CceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCc
Confidence 45678888875432 556677777776543 6899999988754111 2577887777654
No 135
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=22.28 E-value=87 Score=27.44 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=29.9
Q ss_pred eEEEEEEcCCCCC---ChhHHHHHHHHHHhC--CceEEEEEeCCC
Q 015559 108 QRIIVFVGSPIKH---EKKVLEMIGRKLKKN--SVALDIVNFGED 147 (404)
Q Consensus 108 ~RIVlFvgSp~~~---d~~~l~~~ak~LKkn--nI~VdiI~fG~e 147 (404)
++|+++.|||... +..-+..+++.+++. +..|.+|-+...
T Consensus 2 mkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~ 46 (212)
T 3r6w_A 2 SRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRV 46 (212)
T ss_dssp CCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSS
T ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 4789999999863 333345668888887 899999998764
No 136
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=22.03 E-value=2.8e+02 Score=26.78 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 015559 125 LEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV 173 (404)
Q Consensus 125 l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~v 173 (404)
+.++.+.|++.++.+.++.=++.. .+.+.+++.++.....+...+|.|
T Consensus 58 ~~~v~~~L~~~g~~~~~~~~~~~~-p~~~~v~~~~~~~~~~~~d~IIav 105 (371)
T 1o2d_A 58 LDDLKKLLDETEISYEIFDEVEEN-PSFDNVMKAVERYRNDSFDFVVGL 105 (371)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSS-CBHHHHHHHHHHHTTSCCSEEEEE
T ss_pred HHHHHHHHHHcCCeEEEeCCccCC-CCHHHHHHHHHHHHhcCCCEEEEe
Confidence 344445555555544433322323 344455555555543333333333
No 137
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=21.83 E-value=63 Score=30.14 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=39.9
Q ss_pred CcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC--C---------hhHH----HHHHHHHHhCCceEEEEEeCCCC
Q 015559 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH--E---------KKVL----EMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~--d---------~~~l----~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
++|...+.+++.+++|...++..-||| +++|-... . ..-+ ..+|+.+.+.||||..|+=|--.
T Consensus 116 vNl~g~~~~~~~~~p~m~~~~~~G~IV-nisS~~~~~~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~ 193 (255)
T 4g81_D 116 TNLTSAFLVSRSAAKRMIARNSGGKII-NIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYIL 193 (255)
T ss_dssp HHTHHHHHHHHHHHHHHHHHTCCEEEE-EECCGGGTSBCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC
T ss_pred HHhHHHHHHHHHHHHHHHHccCCCEEE-EEeehhhcCCCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCC
Confidence 456677778888887753223444554 55554321 1 1122 35678889999999999999743
No 138
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=21.82 E-value=5.5e+02 Score=24.85 Aligned_cols=82 Identities=18% Similarity=0.130 Sum_probs=50.7
Q ss_pred ceEEEEEeCChh--hhCCCCCCCHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHH--HHH-HHhcC
Q 015559 4 EATLICIDNSEW--MRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLG--KIL-ACMHG 78 (404)
Q Consensus 4 Ea~vIvIDnSes--MrngD~~PtRl~Aq~dAv~~fv~~k~~~NPesqVGLVtmag~~a~VLvtlT~D~~--kil-s~L~~ 78 (404)
-++++|+|.|+| +...|-..+||...+.....+++... ...+-||.++++. |.- ++. .-|..
T Consensus 186 ~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~----~~~~piiLv~NK~---------DL~~eki~~~~l~~ 252 (340)
T 4fid_A 186 DCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF----LKGAVKLIFLNKM---------DLFEEKLTKVPLNT 252 (340)
T ss_dssp SEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG----GTTSEEEEEEECH---------HHHHHHHHHSCGGG
T ss_pred CEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc----cCCCeEEEEEECc---------hhhhhhcCcchHHH
Confidence 479999999976 33445568999999888888887532 1246788888874 221 111 01111
Q ss_pred c--cccCCCcHHHHHHHHHHHh
Q 015559 79 L--EIGGELNLAAGIQVAQLAL 98 (404)
Q Consensus 79 l--~~~G~~sL~~gL~iA~lAL 98 (404)
. .-.|..+...|.+-...-+
T Consensus 253 ~fp~y~g~~~~e~a~~~i~~~f 274 (340)
T 4fid_A 253 IFPEYTGGDNAVMGAQYIQQLF 274 (340)
T ss_dssp TCTTCCCTTCHHHHHHHHHHHH
T ss_pred hhhhhcCCCCHHHHHHHHHHhc
Confidence 1 1236567788877766666
No 139
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=21.66 E-value=2e+02 Score=27.45 Aligned_cols=50 Identities=20% Similarity=0.134 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCCChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHh
Q 015559 109 RIIVFVGSPIKHEKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAV 162 (404)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~L~~~~~~v 162 (404)
.++++.+. ..-+...+.++.+++++. ++.+-|||-|.+ ..+.|++++...
T Consensus 197 ~vi~~~~~-~~k~~~~ll~A~~~l~~~~p~~~lvivG~g~~---~~~~l~~~~~~~ 248 (374)
T 2xci_A 197 EFIVAGSI-HTGEVEIILKAFKEIKKTYSSLKLILVPRHIE---NAKIFEKKARDF 248 (374)
T ss_dssp CEEEEEEE-CGGGHHHHHHHHHHHHTTCTTCEEEEEESSGG---GHHHHHHHHHHT
T ss_pred CEEEEEeC-CCchHHHHHHHHHHHHhhCCCcEEEEECCCHH---HHHHHHHHHHHC
Confidence 34555443 222455677777778764 678888875543 234577777654
No 140
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=21.55 E-value=1.1e+02 Score=25.76 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=22.7
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 015559 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (404)
Q Consensus 121 d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~v 162 (404)
++..+.++++.+.+.+ +|.++|+|... -....|....
T Consensus 25 ~~~~l~~~~~~i~~a~-~I~i~G~G~S~----~~a~~~~~~l 61 (187)
T 3sho_A 25 QPEAIEAAVEAICRAD-HVIVVGMGFSA----AVAVFLGHGL 61 (187)
T ss_dssp CHHHHHHHHHHHHHCS-EEEEECCGGGH----HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC-EEEEEecCchH----HHHHHHHHHH
Confidence 4566777777777766 67777777644 2444444444
No 141
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=21.49 E-value=1.1e+02 Score=26.04 Aligned_cols=39 Identities=10% Similarity=0.336 Sum_probs=27.7
Q ss_pred eEEEEEEcCCCCC--ChhHHHHHHHHHHhC------CceEEEEEeCC
Q 015559 108 QRIIVFVGSPIKH--EKKVLEMIGRKLKKN------SVALDIVNFGE 146 (404)
Q Consensus 108 ~RIVlFvgSp~~~--d~~~l~~~ak~LKkn------nI~VdiI~fG~ 146 (404)
++|+++.||+... +..-+..+++.+++. ++.|.+|.+..
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~ 47 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQ 47 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHH
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhh
Confidence 4789999999742 333444567777765 68999998764
No 142
>3fzy_A RTX toxin RTXA; RTXA toxin, CPD, cysteine protease domain, PRE-cleavage form IDP00167, structural genomics; HET: IHP; 1.95A {Vibrio cholerae} PDB: 3eeb_A* 3gcd_A*
Probab=21.48 E-value=2.2e+02 Score=26.76 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=36.1
Q ss_pred CCCCeEEEEEEcCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 015559 104 KKQQQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 104 k~~~~RIVlFvgSp~~~--d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
...+.+|+|.-|+.... .+.-..+.++.|.+++|+.+|-+.-.++
T Consensus 154 ~~~P~~IsLvGCsL~~~~~~~~Fa~~f~~aL~~~Gi~~~VsAr~~~V 200 (234)
T 3fzy_A 154 NNKPDHISIVGSSLVSDDKQKGFGHQFINAMDANGLRVDVSVRSSEL 200 (234)
T ss_dssp CCCCSEEEEESSSCSCTTSSSSHHHHHHHHHHHTTCCCEEEEESSCE
T ss_pred CCCCCEEEEEEecCcCCCccccHHHHHHHHHHhCCCceeEEEEEeeE
Confidence 34667888887877764 3456788999999999999999888777
No 143
>3ljk_A Glucose-6-phosphate isomerase; structural genomics, IDP02733, cytoplasm, gluconeogenesis, glycolysis; HET: MSE MES; 1.48A {Francisella tularensis} PDB: 3m5p_A* 3q7i_A* 3q88_A*
Probab=21.41 E-value=2e+02 Score=30.19 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEe--CCCC-CCcHHHHHHHHHHhcCC
Q 015559 89 AGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF--GEDD-EGNTEKLEALLAAVNNN 165 (404)
Q Consensus 89 ~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~f--G~e~-~~n~~~L~~~~~~vn~~ 165 (404)
-|-+++..+|++.. +.. .-|.|++ +.|+.++..+.+.|.-...-|-||+= ++.. -.|...++....+-.+.
T Consensus 153 LGp~~v~eaL~~~~--~~~-~~~~Fv~---NvDp~~l~~~L~~l~~~~TLfiViSKSgtT~ET~~n~~~ar~wl~~~~g~ 226 (543)
T 3ljk_A 153 LGPKMVVRALQPYH--CTD-LKVHFVS---NVDADSLLQALHVVDPETTLLIIASKSFSTEETLLNSISAREWLLDHYED 226 (543)
T ss_dssp HHHHHHHHHTGGGC--CSS-CEEEEEC---CSSHHHHHHHHTTCCGGGEEEEEECTTSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhhhhc--cCC-CeEEEEe---CCCHHHHHHHHhhCCcccEEEEEecCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 46678888998732 122 3466774 47999999999999988888888864 3322 01333344443332222
Q ss_pred ---CCcEEEEeCCCCc
Q 015559 166 ---DSSHLVHVPPGPN 178 (404)
Q Consensus 166 ---d~Shlv~vp~g~~ 178 (404)
-..|+|.|-....
T Consensus 227 ~~~~~khfvAvTt~~~ 242 (543)
T 3ljk_A 227 EKAVANHFVAISSKLD 242 (543)
T ss_dssp GGGGGGTEEEECSCHH
T ss_pred cccccCeEEEEcCChH
Confidence 1579998865443
No 144
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=21.17 E-value=2.2e+02 Score=25.70 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=38.3
Q ss_pred EEEEEEcCCCCCCh-------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 015559 109 RIIVFVGSPIKHEK-------KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 175 (404)
Q Consensus 109 RIVlFvgSp~~~d~-------~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~L~~~~~~vn~~d~Shlv~vp~ 175 (404)
+-|.++||-...++ ....++++.|.++|+.|-. | |... ++.+..+..-..++.-+.++|.
T Consensus 24 ~~IaV~Gss~~~~~~~~~~~~~~A~~lg~~LA~~G~~vVs-G-g~~G-----iM~aa~~gAl~~GG~~iGVlP~ 90 (195)
T 1rcu_A 24 KKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLVFN-G-GRDG-----VMELVSQGVREAGGTVVGILPD 90 (195)
T ss_dssp CEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTTCEEEE-C-CSSH-----HHHHHHHHHHHTTCCEEEEEST
T ss_pred CeEEEEecCCCCCccccHHHHHHHHHHHHHHHHCCCEEEe-C-CHHH-----HHHHHHHHHHHcCCcEEEEeCC
Confidence 34555565432322 5667899999999986544 4 3333 7888877776555666666665
No 145
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=21.13 E-value=80 Score=28.10 Aligned_cols=34 Identities=6% Similarity=0.176 Sum_probs=25.9
Q ss_pred eEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015559 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (404)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (404)
+||++.+.+.+.. -....+++.|++.++.|++|-
T Consensus 6 k~IllgvTGs~aa--~k~~~ll~~L~~~g~~V~vv~ 39 (175)
T 3qjg_A 6 ENVLICLCGSVNS--INISHYIIELKSKFDEVNVIA 39 (175)
T ss_dssp CEEEEEECSSGGG--GGHHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEEEeCHHHH--HHHHHHHHHHHHCCCEEEEEE
Confidence 5887777666543 236788999999999999874
No 146
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=20.67 E-value=2.1e+02 Score=25.63 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCC--Ch---------hHH----HHHHHHHHhCCceEEEEEeCCCC
Q 015559 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH--EK---------KVL----EMIGRKLKKNSVALDIVNFGEDD 148 (404)
Q Consensus 85 ~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~--d~---------~~l----~~~ak~LKknnI~VdiI~fG~e~ 148 (404)
+++...+.+.+.++++.. +....|||.+ +|.... .+ .-+ ..+++.+.+.||+|.+|.-|--.
T Consensus 117 ~N~~g~~~~~~~~~~~~~-~~~~g~iv~i-sS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~ 193 (265)
T 3lf2_A 117 LKFFSVIHPVRAFLPQLE-SRADAAIVCV-NSLLASQPEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVE 193 (265)
T ss_dssp HHHHHHHHHHHHHHHHHT-TSTTEEEEEE-EEGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC
T ss_pred HHHHHHHHHHHHHHHHhh-ccCCeEEEEE-CCcccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCc
Confidence 356666777777777753 2234565554 443211 11 111 24566777789999999999644
No 147
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=20.57 E-value=82 Score=27.29 Aligned_cols=38 Identities=13% Similarity=0.289 Sum_probs=28.2
Q ss_pred eEEEEEEcCCCC---CChhH-HHHHHHHHHhCC--ceEEEEEeC
Q 015559 108 QRIIVFVGSPIK---HEKKV-LEMIGRKLKKNS--VALDIVNFG 145 (404)
Q Consensus 108 ~RIVlFvgSp~~---~d~~~-l~~~ak~LKknn--I~VdiI~fG 145 (404)
++|+++.|||.. ..-.. ...+++.+++.+ +.|.+|.+.
T Consensus 2 ~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 2 SKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred CeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 478999999983 32233 345677888876 999999988
No 148
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=20.55 E-value=1.5e+02 Score=27.11 Aligned_cols=35 Identities=9% Similarity=-0.008 Sum_probs=26.4
Q ss_pred CeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 015559 107 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (404)
Q Consensus 107 ~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (404)
.+||||-|.+.+. ---...+++.|++.++.|++|-
T Consensus 4 ~k~IllgvTGaia--a~k~~~ll~~L~~~g~eV~vv~ 38 (209)
T 3zqu_A 4 PERITLAMTGASG--AQYGLRLLDCLVQEEREVHFLI 38 (209)
T ss_dssp CSEEEEEECSSSC--HHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEEECHHH--HHHHHHHHHHHHHCCCEEEEEE
Confidence 3688877776653 2346788999999999999874
No 149
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=20.49 E-value=1.6e+02 Score=27.54 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=28.4
Q ss_pred CCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 015559 104 KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 144 (404)
Q Consensus 104 k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~f 144 (404)
+-+|-.++++-||.. .+.+.+..+++|+++|+|-.+++
T Consensus 142 ~lpr~~~lvlags~m---gg~i~~~v~~~~~~~i~vi~l~m 179 (223)
T 1y7p_A 142 RLHRAEVLVLAGGIM---GGKITEEVKKLRKSGIRVISLSM 179 (223)
T ss_dssp GSTTEEEEEEESSBC---CTHHHHHHHHHGGGTCEEEEESC
T ss_pred hccccceeeEecccc---cchHHHHHHHHHHCCCeEEEecC
Confidence 346777888878775 67888999999999886655543
No 150
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=20.34 E-value=1.7e+02 Score=26.54 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=32.0
Q ss_pred cccCCCcHHHHHHH--HHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 015559 80 EIGGELNLAAGIQV--AQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (404)
Q Consensus 80 ~~~G~~sL~~gL~i--A~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (404)
.++|.+.-..+=.+ .++.|... + . +-|+|++.||.-. ...-..+.+.++.-+..|.++..|-
T Consensus 43 ~l~G~I~~~~a~~i~~~L~~l~~~-~--~-k~I~l~INSPGGs-v~a~~~I~~~i~~~~~pV~t~v~g~ 106 (215)
T 2f6i_A 43 YLTDEINKKTADELISQLLYLDNI-N--H-NDIKIYINSPGGS-INEGLAILDIFNYIKSDIQTISFGL 106 (215)
T ss_dssp EECSCBCHHHHHHHHHHHHHHHHH-C--C-SCEEEEEEECCBC-HHHHHHHHHHHHHSSSCEEEEEEEE
T ss_pred EEccEECHHHHHHHHHHHHHHHhC-C--C-CcEEEEEECCCCC-HHHHHHHHHHHHhcCCCEEEEEeeE
Confidence 55666654433333 33334332 2 3 7899999999864 2222334444444444555555543
No 151
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=20.28 E-value=2.7e+02 Score=27.11 Aligned_cols=85 Identities=9% Similarity=0.108 Sum_probs=57.0
Q ss_pred CCCCHHHHHHH-------hcCccccCCCcHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCCCChhHHHHHHHHHHhCCc
Q 015559 65 PTSDLGKILAC-------MHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSV 137 (404)
Q Consensus 65 lT~D~~kils~-------L~~l~~~G~~sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak~LKknnI 137 (404)
..+|+..++.. ++-+-+.-.+.+- .+++..+|++ +| =||+-=|+..+..+..++++.+++.|+
T Consensus 93 ~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H--~~~~~~al~a--Gk------hVl~EKPla~~~~ea~~l~~~a~~~g~ 162 (417)
T 3v5n_A 93 VYSDFKEMAIREAKLKNGIEAVAIVTPNHVH--YAAAKEFLKR--GI------HVICDKPLTSTLADAKKLKKAADESDA 162 (417)
T ss_dssp BCSCHHHHHHHHHHCTTCCSEEEECSCTTSH--HHHHHHHHTT--TC------EEEEESSSCSSHHHHHHHHHHHHHCSS
T ss_pred ccCCHHHHHhcccccCCCCcEEEECCCcHHH--HHHHHHHHhC--CC------eEEEECCCcCCHHHHHHHHHHHHHcCC
Confidence 45677777776 5555444333322 4667778876 32 266788888899999999999999999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHH
Q 015559 138 ALDIVNFGEDDEGNTEKLEALLA 160 (404)
Q Consensus 138 ~VdiI~fG~e~~~n~~~L~~~~~ 160 (404)
.+ .|+|--.-+.....++++++
T Consensus 163 ~~-~v~~~~R~~p~~~~~k~~i~ 184 (417)
T 3v5n_A 163 LF-VLTHNYTGYPMVRQAREMIE 184 (417)
T ss_dssp CE-EEECGGGGSHHHHHHHHHHH
T ss_pred EE-EEEecccCCHHHHHHHHHHh
Confidence 77 67776544333455666664
No 152
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=20.03 E-value=1.6e+02 Score=22.91 Aligned_cols=54 Identities=11% Similarity=0.050 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHhhhcCCCCCCeEEEEEEcCCCC-C--ChhHHHHHHHHHHhCCceEEEEE
Q 015559 86 NLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-H--EKKVLEMIGRKLKKNSVALDIVN 143 (404)
Q Consensus 86 sL~~gL~iA~lALKhr~~k~~~~RIVlFvgSp~~-~--d~~~l~~~ak~LKknnI~VdiI~ 143 (404)
.+.++|..|...++.. + ...|.||+.++.- . ....+.+..+.|.+.||++.+-+
T Consensus 12 ~~~~al~~~~n~~~~~--~--~~~v~vv~~g~gv~~~~~~~~~~~~i~~l~~~gV~~~~C~ 68 (108)
T 2pd2_A 12 KVPQALRSVINLYNDI--K--DAEIEVVLHQSAIKALLKDSDTRSIIEDLIKKNILIVGCE 68 (108)
T ss_dssp GHHHHHHHHHHHHHHS--T--TCEEEEEECGGGGGGGBTTCTTHHHHHHHHHTTCEEEEEH
T ss_pred HHHHHHHHHHHHHhhC--C--CCeEEEEEcChHHHHHHcCchHHHHHHHHHHCcCEEEecH
Confidence 4566777888777762 2 3456555555542 1 22357788888888888777643
Done!