Query 015560
Match_columns 404
No_of_seqs 302 out of 2495
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:27:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015560hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 99.9 7.3E-27 1.6E-31 236.0 16.1 168 170-356 8-177 (557)
2 KOG4350 Uncharacterized conser 99.9 5.5E-27 1.2E-31 213.4 11.6 172 172-357 29-200 (620)
3 KOG4441 Proteins containing BT 99.9 3.2E-25 6.8E-30 223.4 15.6 163 170-346 19-181 (571)
4 PHA03098 kelch-like protein; P 99.9 2.8E-25 6E-30 225.6 14.7 145 184-346 6-152 (534)
5 PHA02790 Kelch-like protein; P 99.9 2.2E-25 4.8E-30 222.1 11.9 155 174-344 9-167 (480)
6 cd03774 MATH_SPOP Speckle-type 99.9 9.5E-23 2.1E-27 169.4 14.2 131 16-156 2-138 (139)
7 cd03780 MATH_TRAF5 Tumor Necro 99.9 1.1E-22 2.3E-27 168.8 12.8 131 19-153 1-148 (148)
8 cd03777 MATH_TRAF3 Tumor Necro 99.9 2.5E-22 5.3E-27 172.5 13.7 135 16-154 36-185 (186)
9 cd03772 MATH_HAUSP Herpesvirus 99.9 2.6E-22 5.6E-27 166.3 13.5 125 18-156 2-134 (137)
10 cd03781 MATH_TRAF4 Tumor Necro 99.9 5E-22 1.1E-26 167.3 12.0 132 19-153 1-154 (154)
11 cd03776 MATH_TRAF6 Tumor Necro 99.9 3.5E-22 7.7E-27 167.4 10.8 131 19-153 1-147 (147)
12 cd00270 MATH_TRAF_C Tumor Necr 99.9 4.7E-22 1E-26 167.4 11.3 131 19-153 1-149 (149)
13 cd03779 MATH_TRAF1 Tumor Necro 99.9 1.4E-21 3E-26 161.2 12.5 130 19-153 1-147 (147)
14 cd03773 MATH_TRIM37 Tripartite 99.9 1.6E-21 3.4E-26 160.8 12.0 124 18-153 4-130 (132)
15 cd03775 MATH_Ubp21p Ubiquitin- 99.9 2.6E-21 5.7E-26 159.5 12.2 118 20-153 2-134 (134)
16 cd03771 MATH_Meprin Meprin fam 99.9 3.7E-21 8E-26 161.6 12.8 133 19-153 2-167 (167)
17 cd03778 MATH_TRAF2 Tumor Necro 99.8 3.8E-19 8.3E-24 148.2 13.1 136 16-153 16-164 (164)
18 KOG2075 Topoisomerase TOP1-int 99.8 6.8E-19 1.5E-23 164.6 16.0 176 167-357 94-275 (521)
19 KOG4591 Uncharacterized conser 99.8 3.2E-19 6.9E-24 148.2 10.2 167 171-356 50-219 (280)
20 cd00121 MATH MATH (meprin and 99.8 1.9E-18 4E-23 140.7 14.0 120 19-153 1-126 (126)
21 PF00651 BTB: BTB/POZ domain; 99.8 2.7E-19 5.9E-24 142.7 8.8 108 178-296 1-110 (111)
22 PF00917 MATH: MATH domain; I 99.7 3.6E-17 7.8E-22 132.1 10.2 113 25-154 1-119 (119)
23 KOG4682 Uncharacterized conser 99.7 1.7E-16 3.6E-21 145.4 10.7 152 178-344 60-215 (488)
24 smart00225 BTB Broad-Complex, 99.7 3.7E-16 8.1E-21 118.9 9.0 90 189-290 1-90 (90)
25 cd03782 MATH_Meprin_Beta Mepri 99.6 1.5E-15 3.3E-20 125.1 10.3 132 19-152 2-166 (167)
26 cd03783 MATH_Meprin_Alpha Mepr 99.6 1.5E-15 3.3E-20 125.9 10.0 133 19-152 2-166 (167)
27 KOG0783 Uncharacterized conser 99.6 5.1E-16 1.1E-20 153.1 8.1 166 186-360 709-876 (1267)
28 smart00061 MATH meprin and TRA 99.5 4.1E-14 8.9E-19 109.2 9.4 89 21-130 2-95 (95)
29 KOG1987 Speckle-type POZ prote 99.4 1.5E-12 3.2E-17 122.4 11.9 237 23-345 8-249 (297)
30 COG5077 Ubiquitin carboxyl-ter 99.3 8.2E-12 1.8E-16 122.9 7.0 173 14-218 34-219 (1089)
31 KOG0783 Uncharacterized conser 98.7 2.1E-08 4.6E-13 100.2 6.4 121 169-289 536-681 (1267)
32 KOG2838 Uncharacterized conser 98.7 4E-08 8.6E-13 86.4 7.0 135 171-305 219-396 (401)
33 KOG0511 Ankyrin repeat protein 98.6 2E-07 4.4E-12 85.6 8.6 134 197-345 301-444 (516)
34 KOG2716 Polymerase delta-inter 98.3 2.5E-06 5.4E-11 75.0 9.0 97 190-296 7-104 (230)
35 KOG2838 Uncharacterized conser 98.3 1.5E-06 3.3E-11 76.6 7.0 107 168-283 111-219 (401)
36 PF02214 BTB_2: BTB/POZ domain 97.9 1.2E-05 2.6E-10 61.7 3.8 88 190-289 1-94 (94)
37 KOG3473 RNA polymerase II tran 97.6 0.00023 4.9E-09 52.8 6.9 89 190-281 19-111 (112)
38 PF11822 DUF3342: Domain of un 97.2 0.0019 4.2E-08 59.6 8.9 88 197-296 14-103 (317)
39 smart00512 Skp1 Found in Skp1 96.8 0.0058 1.2E-07 47.7 7.5 59 190-249 4-64 (104)
40 KOG2714 SETA binding protein S 96.6 0.0063 1.4E-07 57.8 6.9 93 189-293 12-111 (465)
41 KOG0511 Ankyrin repeat protein 96.6 0.0051 1.1E-07 57.4 6.2 101 175-289 134-238 (516)
42 PF03931 Skp1_POZ: Skp1 family 96.6 0.0079 1.7E-07 42.0 5.8 56 190-248 3-59 (62)
43 KOG1863 Ubiquitin carboxyl-ter 96.5 0.0028 6E-08 69.5 4.5 167 20-219 28-201 (1093)
44 KOG1724 SCF ubiquitin ligase, 96.4 0.042 9.1E-07 46.1 10.3 104 195-299 13-129 (162)
45 PF07707 BACK: BTB And C-termi 96.4 0.0047 1E-07 47.8 4.5 50 302-356 1-50 (103)
46 KOG1665 AFH1-interacting prote 96.2 0.012 2.6E-07 51.0 5.7 93 189-292 10-106 (302)
47 KOG0297 TNF receptor-associate 95.3 0.011 2.5E-07 57.4 2.7 79 15-94 276-365 (391)
48 smart00875 BACK BTB And C-term 95.1 0.017 3.7E-07 44.2 2.8 49 303-356 2-50 (101)
49 KOG1778 CREB binding protein/P 94.0 0.033 7.1E-07 52.1 2.1 148 189-349 28-176 (319)
50 COG5201 SKP1 SCF ubiquitin lig 93.8 0.43 9.2E-06 37.8 7.5 110 189-301 3-126 (158)
51 KOG2715 Uncharacterized conser 92.7 0.28 6E-06 40.8 5.3 97 188-296 21-121 (210)
52 PF01466 Skp1: Skp1 family, di 89.8 0.56 1.2E-05 34.3 4.1 48 266-313 12-62 (78)
53 KOG2075 Topoisomerase TOP1-int 84.1 1.8 3.9E-05 42.3 5.0 58 297-359 185-247 (521)
54 KOG2723 Uncharacterized conser 74.3 5.8 0.00013 35.1 4.7 96 186-292 6-105 (221)
55 PF11822 DUF3342: Domain of un 65.2 3.1 6.7E-05 38.8 1.1 42 295-338 70-111 (317)
56 KOG3840 Uncharaterized conserv 53.6 13 0.00028 34.3 3.0 86 186-282 94-184 (438)
57 PHA03098 kelch-like protein; P 51.9 46 0.00099 33.9 7.2 30 297-326 73-102 (534)
58 PF00651 BTB: BTB/POZ domain; 48.5 21 0.00046 27.2 3.3 28 299-326 81-108 (111)
59 PF07707 BACK: BTB And C-termi 39.9 38 0.00082 25.4 3.4 59 271-331 2-74 (103)
60 PHA02713 hypothetical protein; 38.1 42 0.00091 34.5 4.3 31 296-326 90-120 (557)
61 KOG4682 Uncharacterized conser 36.6 30 0.00065 33.4 2.7 32 265-296 170-201 (488)
62 PF02519 Auxin_inducible: Auxi 29.8 1.8E+02 0.004 22.2 5.6 55 189-246 40-99 (100)
63 smart00875 BACK BTB And C-term 28.7 59 0.0013 24.0 2.8 25 272-296 3-27 (101)
64 PHA02790 Kelch-like protein; P 28.7 99 0.0021 31.1 5.2 31 266-296 121-151 (480)
65 KOG4441 Proteins containing BT 24.4 1.1E+02 0.0024 31.6 4.7 31 296-326 101-131 (571)
66 PF01466 Skp1: Skp1 family, di 21.2 2.1E+02 0.0046 20.5 4.4 31 296-326 10-40 (78)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.94 E-value=7.3e-27 Score=236.05 Aligned_cols=168 Identities=23% Similarity=0.351 Sum_probs=153.3
Q ss_pred CCCchHHHHHHHhhcCCCCCEEEEeC-CceehhhHHHHHhcCHHHHHHhcccccCCC-CCcEEeCCCCHHHHHHHHHhhh
Q 015560 170 PPSDMGQGLKDLLESEIGCDIVFEVG-DETFKAHKLILAARSPVFRAQFYGLVGDRN-LDKVVVKDVEPSIFKAMLLFIY 247 (404)
Q Consensus 170 ~~~~l~~~l~~l~~~~~~sDv~l~v~-~~~~~ahk~iLa~~S~~F~~~f~~~~~e~~-~~~i~l~d~~~~~f~~~L~~iY 247 (404)
+...+++.|++|+.++.++||+|.++ |++|+|||.|||++|+||++||.++|.|.. +.+|.|.++++++|+.+|+|+|
T Consensus 8 h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Y 87 (557)
T PHA02713 8 HNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLY 87 (557)
T ss_pred hhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhc
Confidence 34568899999999999999999997 899999999999999999999999999864 7889999999999999999999
Q ss_pred cCCCCCcccccCCCCcccchHHHHHHHHHhhhcChhhHHHHHHHHHHccCChhhHHHHHHHHHhCCChHHHHHHHHHhcC
Q 015560 248 TDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAAT 327 (404)
Q Consensus 248 t~~~~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~~~~l~~~c~~~L~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~ 327 (404)
|+.+. .+++.+||.+|++|+++.|++.|+++|...++.+||+.++.+|..+.+..|.+.|.+||.
T Consensus 88 t~~i~--------------~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~- 152 (557)
T PHA02713 88 NRHIS--------------SMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLM- 152 (557)
T ss_pred CCCCC--------------HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHH-
Confidence 98743 479999999999999999999999999999999999999998888998899999999999
Q ss_pred CCCHHHHhccccchhhHhhChHHHHHHHH
Q 015560 328 PANLGVIMQSEGFKHLEESCPSLLSELLK 356 (404)
Q Consensus 328 ~~~~~~~~~~~~f~~l~~~~p~l~~ell~ 356 (404)
+||.++.++++|.+|+.+ .+.++|.
T Consensus 153 -~~f~~v~~~~ef~~L~~~---~l~~lL~ 177 (557)
T PHA02713 153 -SNIPTLITTDAFKKTVFE---ILFDIIS 177 (557)
T ss_pred -HHHHHHhCChhhhhCCHH---HHHHHhc
Confidence 999999999999887754 4444443
No 2
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.94 E-value=5.5e-27 Score=213.40 Aligned_cols=172 Identities=29% Similarity=0.440 Sum_probs=160.5
Q ss_pred CchHHHHHHHhhcCCCCCEEEEeCCceehhhHHHHHhcCHHHHHHhcccccCCCCCcEEeCCCCHHHHHHHHHhhhcCCC
Q 015560 172 SDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKF 251 (404)
Q Consensus 172 ~~l~~~l~~l~~~~~~sDv~l~v~~~~~~ahk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~~ 251 (404)
..+.+++.+++.+++++||+|+|++++|+|||.|||+||.||++|++++|.|+.+..|.|.+...++|+.+|+|||||.+
T Consensus 29 ~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~ 108 (620)
T KOG4350|consen 29 NNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKI 108 (620)
T ss_pred cchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcce
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCcccchHHHHHHHHHhhhcChhhHHHHHHHHHHccCChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCCH
Q 015560 252 PDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANL 331 (404)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~~~~l~~~c~~~L~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~ 331 (404)
.... ...+...+.|.+|++|++..|.....++|+..+..+|++.++..|..|++.+|.+.|+.|+. +|.
T Consensus 109 ~l~~---------~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmD--rnA 177 (620)
T KOG4350|consen 109 DLAG---------VEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMD--RNA 177 (620)
T ss_pred eccc---------chHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHh--cCH
Confidence 8655 45678899999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHhccccchhhHhhChHHHHHHHHH
Q 015560 332 GVIMQSEGFKHLEESCPSLLSELLKT 357 (404)
Q Consensus 332 ~~~~~~~~f~~l~~~~p~l~~ell~~ 357 (404)
.+++..+.|..|+++ -+++++.+
T Consensus 178 ~~lL~~~sFn~LSk~---sL~e~l~R 200 (620)
T KOG4350|consen 178 DQLLEDPSFNRLSKD---SLKELLAR 200 (620)
T ss_pred HhhhcCcchhhhhHH---HHHHHHhh
Confidence 999999999999986 55565543
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.93 E-value=3.2e-25 Score=223.39 Aligned_cols=163 Identities=28% Similarity=0.456 Sum_probs=156.4
Q ss_pred CCCchHHHHHHHhhcCCCCCEEEEeCCceehhhHHHHHhcCHHHHHHhcccccCCCCCcEEeCCCCHHHHHHHHHhhhcC
Q 015560 170 PPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTD 249 (404)
Q Consensus 170 ~~~~l~~~l~~l~~~~~~sDv~l~v~~~~~~ahk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~ 249 (404)
+...+.+.|+.+++.+.++||+|.+++++|.|||.|||+.||||++||.++++|+.+.+|.|.+++++.++.+|+|+||+
T Consensus 19 h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~ 98 (571)
T KOG4441|consen 19 HSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTG 98 (571)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcc
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCcccchHHHHHHHHHhhhcChhhHHHHHHHHHHccCChhhHHHHHHHHHhCCChHHHHHHHHHhcCCC
Q 015560 250 KFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPA 329 (404)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~~~~l~~~c~~~L~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~ 329 (404)
.+. ++.+++.+||.+|+.||++.+.+.|.+||...+.++||+.+..+|+.|++.+|.+.+..|+. .
T Consensus 99 ~i~------------i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~--~ 164 (571)
T KOG4441|consen 99 KLE------------ISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYIL--Q 164 (571)
T ss_pred eEE------------echHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH--H
Confidence 998 56789999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CHHHHhccccchhhHhh
Q 015560 330 NLGVIMQSEGFKHLEES 346 (404)
Q Consensus 330 ~~~~~~~~~~f~~l~~~ 346 (404)
||.++..+++|..|+.+
T Consensus 165 ~F~~v~~~eefl~L~~~ 181 (571)
T KOG4441|consen 165 HFAEVSKTEEFLLLSLE 181 (571)
T ss_pred HHHHHhccHHhhCCCHH
Confidence 99999999999998764
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.93 E-value=2.8e-25 Score=225.57 Aligned_cols=145 Identities=21% Similarity=0.351 Sum_probs=137.9
Q ss_pred cCCCCCEEEEe--CCceehhhHHHHHhcCHHHHHHhcccccCCCCCcEEeCCCCHHHHHHHHHhhhcCCCCCcccccCCC
Q 015560 184 SEIGCDIVFEV--GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTT 261 (404)
Q Consensus 184 ~~~~sDv~l~v--~~~~~~ahk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~ 261 (404)
++.+|||+|.+ +|++|+|||.||+++|+||++||.+++. +.+|.|.+ ++++|+.+|+|+|||.+.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~--------- 72 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKIN--------- 72 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceE---------
Confidence 78899999998 9999999999999999999999999887 57799999 999999999999999987
Q ss_pred CcccchHHHHHHHHHhhhcChhhHHHHHHHHHHccCChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCCHHHHhccccch
Q 015560 262 SMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGVIMQSEGFK 341 (404)
Q Consensus 262 ~~~~~~~~~~~ll~~Ad~~~~~~l~~~c~~~L~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~f~ 341 (404)
++.+++.+||.+|++|+++.|+..|+++|...++.+||+.++.+|..|++..|++.|.+||. .|+.++.++++|.
T Consensus 73 ---i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~--~nf~~v~~~~~f~ 147 (534)
T PHA03098 73 ---ITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIR--NNIELIYNDPDFI 147 (534)
T ss_pred ---EcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHH--HHHHHHhcCchhh
Confidence 55689999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhHhh
Q 015560 342 HLEES 346 (404)
Q Consensus 342 ~l~~~ 346 (404)
+|+.+
T Consensus 148 ~l~~~ 152 (534)
T PHA03098 148 YLSKN 152 (534)
T ss_pred cCCHH
Confidence 88754
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=2.2e-25 Score=222.07 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=139.4
Q ss_pred hHHHHHHHhhcCCCCCEEEEeCCceehhhHHHHHhcCHHHHHHhcccccCCCCCcEEe--CCCCHHHHHHHHHhhhcCCC
Q 015560 174 MGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVV--KDVEPSIFKAMLLFIYTDKF 251 (404)
Q Consensus 174 l~~~l~~l~~~~~~sDv~l~v~~~~~~ahk~iLa~~S~~F~~~f~~~~~e~~~~~i~l--~d~~~~~f~~~L~~iYt~~~ 251 (404)
.-+++-.+...+.++||++.+ |++|+|||.|||+.||||++||.++|+|++. +|.+ .++++++++.+|+|+||+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l 86 (480)
T PHA02790 9 YCKNILALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKV 86 (480)
T ss_pred hhhhHHHHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeE
Confidence 345666777788999987755 5599999999999999999999999999864 5555 48999999999999999999
Q ss_pred CCcccccCCCCcccchHHHHHHHHHhhhcChhhHHHHHHHHHHccCChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCCH
Q 015560 252 PDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANL 331 (404)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~~~~l~~~c~~~L~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~ 331 (404)
. ++.+++++||.+|++||++.+++.|.+||.+.|+++||+.++.+|+.|++.+|++.+.+||. +||
T Consensus 87 ~------------it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~--~nF 152 (480)
T PHA02790 87 Y------------IDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIA--KHF 152 (480)
T ss_pred E------------EecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHH--HhH
Confidence 9 56689999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHhcc--ccchhhH
Q 015560 332 GVIMQS--EGFKHLE 344 (404)
Q Consensus 332 ~~~~~~--~~f~~l~ 344 (404)
.++.++ ++|..|+
T Consensus 153 ~~v~~~~~~ef~~L~ 167 (480)
T PHA02790 153 LELEDDIIDNFDYLS 167 (480)
T ss_pred HHHhcccchhhhhCC
Confidence 999986 6775543
No 6
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.89 E-value=9.5e-23 Score=169.37 Aligned_cols=131 Identities=27% Similarity=0.601 Sum_probs=106.3
Q ss_pred eeeeEEEEEEcCcccccCCCCCCeeecCcceecC---eeEEEEEEcCCCCCCCCCceEEEEEEecC-CCceEEEEEEEEE
Q 015560 16 TVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGG---YDWAIYFYPDGKNPEDGALYVSVFIALAS-EGTDVRALFELTL 91 (404)
Q Consensus 16 ~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~g---~~W~L~~~p~g~~~~~~~~~lslyL~~~~-~~w~v~a~~~~~l 91 (404)
+.+.+|+|+|+|||.+++ +.++++.|+.|.+|| ++|+|++||+|...++.+ |+|+||.+.. ..+++.|+|+|+|
T Consensus 2 ~~~~~~~w~I~~fS~~~~-~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~-~iSlyL~l~~~~~~~v~a~f~~~l 79 (139)
T cd03774 2 VVKFCYMWTISNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKD-YLSLYLLLVSCPKSEVRAKFKFSI 79 (139)
T ss_pred ceEEEEEEEECCchhhhh-cCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCC-eEEEEEEEccCCCCcEEEEEEEEE
Confidence 567899999999999876 568899999999998 499999999998766666 9999999864 5578999999999
Q ss_pred EeCCCCCccceeeccccccccCCcccccCCCccCceeEEeccccc--cccCcCCCceEEEEEeeeee
Q 015560 92 VDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLE--TSDYIKDDCLLINCTVGVVR 156 (404)
Q Consensus 92 ln~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~l~--~~~~l~dd~l~i~~~v~i~~ 156 (404)
+|+++........ ...+.|. ....|||.+||++++|. .+|||.||+|+|+|+|.|+.
T Consensus 80 ~n~~~~~~~~~~~-------~~~~~f~-~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 80 LNAKGEETKAMES-------QRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EecCCCeeeeecc-------cCcEeCC-CCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 9998754321110 1123443 35789999999999995 57899999999999999974
No 7
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.89 E-value=1.1e-22 Score=168.79 Aligned_cols=131 Identities=27% Similarity=0.420 Sum_probs=103.8
Q ss_pred eEEEEEEcCcccccC-CCCCC--eeecCcc--eecCeeEEEEEEcCCCCCCCCCceEEEEEEecCC------CceEEEEE
Q 015560 19 GSHQFTVKGYSLAKG-MGPGK--CLSSDVF--TVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRALF 87 (404)
Q Consensus 19 ~~~~w~I~~fs~~~~-~~~~~--~~~S~~f--~~~g~~W~L~~~p~g~~~~~~~~~lslyL~~~~~------~w~v~a~~ 87 (404)
|.+.|+|.+|+.+++ ++.|+ ++.|++| .++||+|+|++||||.+.+.++ |||+||.+... .|++.+++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~-~iSv~l~l~~g~~D~~l~wp~~~~~ 79 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGT-HLSLYFVVMRGEFDSLLQWPFRQRV 79 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCC-EEEEEEEEecCccccccCcceEEEE
Confidence 579999999999864 67777 8999999 8999999999999999877777 99999999854 79999999
Q ss_pred EEEEEeCCCCCccceeeccccccccCCcccccC----CCccCceeEEeccccccc--cCcCCCceEEEEEee
Q 015560 88 ELTLVDQSGKGKHKVHSHFDRALESGPYTLKYR----GSMWGYKRFFKRTSLETS--DYIKDDCLLINCTVG 153 (404)
Q Consensus 88 ~~~lln~~~~~~~~~~~~~~~~~~~~~~~f~~~----~~~~G~~~fi~~~~l~~~--~~l~dd~l~i~~~v~ 153 (404)
+|+|+||.+.+.+..... .... ....|... +..||+.+||++++|+.+ +||.||++.|+|.|.
T Consensus 80 tfsLlDq~~~~~~~~~~~-~~~~--~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v~ 148 (148)
T cd03780 80 TLMLLDQSGKKNHIMETF-KADP--NSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAVD 148 (148)
T ss_pred EEEEECCCCCCCCcceee-ecCC--ccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEEC
Confidence 999999986544312111 0000 01234222 457999999999999854 999999999999873
No 8
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.89 E-value=2.5e-22 Score=172.54 Aligned_cols=135 Identities=27% Similarity=0.399 Sum_probs=106.1
Q ss_pred eeeeEEEEEEcCcccccC-CCCCC--eeecCcceec--CeeEEEEEEcCCCCCCCCCceEEEEEEecCC------CceEE
Q 015560 16 TVNGSHQFTVKGYSLAKG-MGPGK--CLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVR 84 (404)
Q Consensus 16 ~~~~~~~w~I~~fs~~~~-~~~~~--~~~S~~f~~~--g~~W~L~~~p~g~~~~~~~~~lslyL~~~~~------~w~v~ 84 (404)
...|+|.|+|.||+.++. ++.|+ +++||+|.+| ||+|+|++||||.+.+.++ |||+||.+... .|++.
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~-~iSvyl~L~~ge~D~~L~WP~~ 114 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGT-HLSLFFVIMRGEYDALLPWPFK 114 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCC-EEEEEEEEecCCcccccCCcee
Confidence 457999999999998764 56666 8999999999 9999999999999877777 99999999843 69999
Q ss_pred EEEEEEEEeCCCCCccceeeccccccccCCcccc-cC---CCccCceeEEeccccccccCcCCCceEEEEEeee
Q 015560 85 ALFELTLVDQSGKGKHKVHSHFDRALESGPYTLK-YR---GSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGV 154 (404)
Q Consensus 85 a~~~~~lln~~~~~~~~~~~~~~~~~~~~~~~f~-~~---~~~~G~~~fi~~~~l~~~~~l~dd~l~i~~~v~i 154 (404)
++++|+|+||.+........ +.... + ...|. +. +.+||++.||++++|+.++||.||++.|+|.|..
T Consensus 115 ~~~tfsLlDQ~~~~~~~~~~-~~p~p-~-~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 115 QKVTLMLMDQGSSRRHLGDA-FKPDP-N-SSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDT 185 (186)
T ss_pred EEEEEEEEcCCCccccccce-eccCC-c-cccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEec
Confidence 99999999997632221111 01000 0 12232 22 4579999999999999899999999999998863
No 9
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.89 E-value=2.6e-22 Score=166.26 Aligned_cols=125 Identities=17% Similarity=0.269 Sum_probs=100.6
Q ss_pred eeEEEEEEcCcccccCCCCCCeeecCcceecCeeEEEEEEcCCCCCC--CCCceEEEEEEec----CCCceEEEEEEEEE
Q 015560 18 NGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPE--DGALYVSVFIALA----SEGTDVRALFELTL 91 (404)
Q Consensus 18 ~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~g~~W~L~~~p~g~~~~--~~~~~lslyL~~~----~~~w~v~a~~~~~l 91 (404)
.++|+|+|+|||.+ ++.++|+.|.+||++|+|.+||+|.... ..+ ++|+||.|. ...|.+.|+|+|+|
T Consensus 2 ~~~~~~~I~~~S~l-----~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~-~lsvyL~~~~~~~~~~w~i~a~~~~~l 75 (137)
T cd03772 2 EATFSFTVERFSRL-----SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQK-SVGFFLQCNAESDSTSWSCHAQAVLRI 75 (137)
T ss_pred CcEEEEEECCcccC-----CCcEECCCEEECCcceEEEEEeCCCCCCCCCCC-eEEEEEeeCCcCCCCCCeEEEEEEEEE
Confidence 36899999999997 3689999999999999999999996542 234 999999997 24689999999999
Q ss_pred EeCCCCCccceeeccccccccCCcccccCCCccCceeEEeccccc--cccCcCCCceEEEEEeeeee
Q 015560 92 VDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLE--TSDYIKDDCLLINCTVGVVR 156 (404)
Q Consensus 92 ln~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~l~--~~~~l~dd~l~i~~~v~i~~ 156 (404)
+|+.+........ ..+.|......|||.+||+|++|. .+|||.||+++|+|+|++..
T Consensus 76 ~~~~~~~~~~~~~--------~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 76 INYKDDEPSFSRR--------ISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred EcCCCCcccEEEe--------eeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 9998532211111 123454556789999999999995 68999999999999998864
No 10
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.87 E-value=5e-22 Score=167.34 Aligned_cols=132 Identities=23% Similarity=0.370 Sum_probs=102.5
Q ss_pred eEEEEEEcCcccccCC---CCCCeeecCcceec--CeeEEEEEEcCCCCCCCCCceEEEEEEecCC------CceEEEEE
Q 015560 19 GSHQFTVKGYSLAKGM---GPGKCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRALF 87 (404)
Q Consensus 19 ~~~~w~I~~fs~~~~~---~~~~~~~S~~f~~~--g~~W~L~~~p~g~~~~~~~~~lslyL~~~~~------~w~v~a~~ 87 (404)
|.|.|+|.||+.++++ +.++.+.|+.|.+| ||+|+|++||||...+..+ +||+||++... .|++.+++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~-~vs~~l~l~~ge~d~~l~wp~~a~~ 79 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGS-HLSVYIRVLPGEYDNLLEWPFSHRI 79 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCC-EEEEEEEEecCCcccccCCceeeEE
Confidence 5799999999998763 24689999999999 9999999999998877666 99999999742 79999999
Q ss_pred EEEEEeCCCCC--cc-ceeeccccccccCCcccc--------cCCCccCceeEEeccccccccCcCCCceEEEEEee
Q 015560 88 ELTLVDQSGKG--KH-KVHSHFDRALESGPYTLK--------YRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVG 153 (404)
Q Consensus 88 ~~~lln~~~~~--~~-~~~~~~~~~~~~~~~~f~--------~~~~~~G~~~fi~~~~l~~~~~l~dd~l~i~~~v~ 153 (404)
+|+|+||.+.. .. .....+... .....|. ..+.+||+..||++++|+.++||.||+|+|+|.|.
T Consensus 80 ~~~llDq~~~~~~~~~~~~~~~~~~--~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 80 TFTLLDQSDPSLSKPQHITETFTPD--PTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEEECCCCCccccCcceEEEEEcC--CchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEeC
Confidence 99999998641 11 110111000 0112232 23457999999999999988999999999999874
No 11
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.87 E-value=3.5e-22 Score=167.38 Aligned_cols=131 Identities=22% Similarity=0.300 Sum_probs=100.8
Q ss_pred eEEEEEEcCcccccC-CCCCCe--eecCccee--cCeeEEEEEEcCCCCCCCCCceEEEEEEecC------CCceEEEEE
Q 015560 19 GSHQFTVKGYSLAKG-MGPGKC--LSSDVFTV--GGYDWAIYFYPDGKNPEDGALYVSVFIALAS------EGTDVRALF 87 (404)
Q Consensus 19 ~~~~w~I~~fs~~~~-~~~~~~--~~S~~f~~--~g~~W~L~~~p~g~~~~~~~~~lslyL~~~~------~~w~v~a~~ 87 (404)
|+|+|+|.||+.+++ ++.|+. +.|+.|.+ ||++|+|++||+|...+..+ +||+||.+.. .+|++.|++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~-~lS~~L~l~~~~~d~~l~wpv~a~~ 79 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPN-YISLFVHLMQGENDSHLDWPFQGTI 79 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCC-EEEEEEEEeccCCCcccCCccccee
Confidence 579999999997554 677775 88999985 79999999999998876666 9999999863 258999999
Q ss_pred EEEEEeCCCCCccceeeccccccccCCccccc-----CCCccCceeEEeccccccccCcCCCceEEEEEee
Q 015560 88 ELTLVDQSGKGKHKVHSHFDRALESGPYTLKY-----RGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVG 153 (404)
Q Consensus 88 ~~~lln~~~~~~~~~~~~~~~~~~~~~~~f~~-----~~~~~G~~~fi~~~~l~~~~~l~dd~l~i~~~v~ 153 (404)
+|+|+||.+......... ... .....|.. ....|||.+||++++|+..+||.||+|+|+|.|.
T Consensus 80 ~~~lldq~~~~~~~~~~~-~~~--~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 80 TLTLLDQSEPRQNIHETM-MSK--PELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEEECCCcccCccEEEE-EcC--CChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 999999987433211110 000 01123321 2457999999999999988999999999999984
No 12
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.87 E-value=4.7e-22 Score=167.39 Aligned_cols=131 Identities=28% Similarity=0.448 Sum_probs=101.1
Q ss_pred eEEEEEEcCcccccC---CCCCCeeecCcceec--CeeEEEEEEcCCCCCCCCCceEEEEEEecC------CCceEEEEE
Q 015560 19 GSHQFTVKGYSLAKG---MGPGKCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALAS------EGTDVRALF 87 (404)
Q Consensus 19 ~~~~w~I~~fs~~~~---~~~~~~~~S~~f~~~--g~~W~L~~~p~g~~~~~~~~~lslyL~~~~------~~w~v~a~~ 87 (404)
|+|+|+|+||+.+++ ...++.++||.|.+| |++|+|++||+|...+.++ |||+||.+.. ..|++.|++
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~-~lsl~L~l~~~~~d~~~~w~~~~~~ 79 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGT-HLSLFVHVMKGEYDALLEWPFRGKI 79 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCC-EEEEEEEEeccCCCccccCCccceE
Confidence 589999999999876 256789999999999 9999999999998766666 9999999852 359999999
Q ss_pred EEEEEeCCCC--CccceeeccccccccCCcccc-----cCCCccCceeEEeccccccccCcCCCceEEEEEee
Q 015560 88 ELTLVDQSGK--GKHKVHSHFDRALESGPYTLK-----YRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVG 153 (404)
Q Consensus 88 ~~~lln~~~~--~~~~~~~~~~~~~~~~~~~f~-----~~~~~~G~~~fi~~~~l~~~~~l~dd~l~i~~~v~ 153 (404)
+|+|+|+.++ ....... +.... ....|. ....+|||.+||++++|++.+||.||+|+|+|+|.
T Consensus 80 ~~~l~d~~~~~~~~~~~~~-~~~~~--~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 80 TLTLLDQSDDSKRKHITET-FMPDP--NSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEEECCCCccccCceEEE-EEcCC--chHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEEC
Confidence 9999999874 1111000 00000 011222 24578999999999999988999999999999974
No 13
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.87 E-value=1.4e-21 Score=161.23 Aligned_cols=130 Identities=22% Similarity=0.392 Sum_probs=99.5
Q ss_pred eEEEEEEcCcccccC-CCCC--CeeecCcceec--CeeEEEEEEcCCCCCCCCCceEEEEEEecCC------CceEEEEE
Q 015560 19 GSHQFTVKGYSLAKG-MGPG--KCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRALF 87 (404)
Q Consensus 19 ~~~~w~I~~fs~~~~-~~~~--~~~~S~~f~~~--g~~W~L~~~p~g~~~~~~~~~lslyL~~~~~------~w~v~a~~ 87 (404)
|.+.|+|.||+.... ...+ ..++||+|..+ ||.|+|++||||.+.+.++ |||+||.+... .|++.+++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~-~iSv~l~l~~g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGT-HISLFFVIMKGEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCC-EEEEEEEEecCCcccccCcceEEEE
Confidence 579999999996443 3333 47999999876 9999999999999877776 99999999843 79999999
Q ss_pred EEEEEeCCCCCccceeeccccccccCCcccc----cCCCccCceeEEeccccccc--cCcCCCceEEEEEee
Q 015560 88 ELTLVDQSGKGKHKVHSHFDRALESGPYTLK----YRGSMWGYKRFFKRTSLETS--DYIKDDCLLINCTVG 153 (404)
Q Consensus 88 ~~~lln~~~~~~~~~~~~~~~~~~~~~~~f~----~~~~~~G~~~fi~~~~l~~~--~~l~dd~l~i~~~v~ 153 (404)
+|+|+||.+.+.. .... ..+.....|. ..+..||+.+||++++|+.+ +||.||+++|+|.|.
T Consensus 80 tfsLlDq~~~~~~-~~~~---~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 80 TFMLLDQNNREHV-IDAF---RPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEEECCCCCCCC-cEee---cCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 9999999864331 1111 0000012343 23457999999999999965 999999999999874
No 14
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.87 E-value=1.6e-21 Score=160.78 Aligned_cols=124 Identities=28% Similarity=0.537 Sum_probs=99.8
Q ss_pred eeEEEEEEcCcccccCCCCCCeeecCcceecCeeEEEEEEcCCCCCCCCCceEEEEEEecC-CCceEEEEEEEEEEeCCC
Q 015560 18 NGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS-EGTDVRALFELTLVDQSG 96 (404)
Q Consensus 18 ~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~g~~W~L~~~p~g~~~~~~~~~lslyL~~~~-~~w~v~a~~~~~lln~~~ 96 (404)
..+++|+|+|||.+++ .++++.|+.|.+||++|+|.+||+|...+.++ +||+||.+.. ..|.+.++++|+|+|+.+
T Consensus 4 ~~~~~~~I~~fS~~~~--~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~-~lSl~L~l~~~~~~~~~~~~~l~llnq~~ 80 (132)
T cd03773 4 YDSATFTLENFSTLRQ--SADPVYSDPLNVDGLCWRLKVYPDGNGEVRGN-FLSVFLELCSGLGEASKYEYRVEMVHQAN 80 (132)
T ss_pred CcccEEEECChhhhhc--CCcceeCCCeEeCCccEEEEEECCCCCCCCCC-EEEEEEEeecCCCCceeEEEEEEEEcCCC
Confidence 4679999999999864 57899999999999999999999998766666 9999999874 357889999999999953
Q ss_pred CCccceeeccccccccCCcccccCCCccCceeEEeccccccccCcCC--CceEEEEEee
Q 015560 97 KGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKD--DCLLINCTVG 153 (404)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~l~~~~~l~d--d~l~i~~~v~ 153 (404)
........ ..+.|.. +..|||.+||++++|+++|||.| |+|+|+|.|.
T Consensus 81 ~~~~~~~~--------~~~~f~~-~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 81 PTKNIKRE--------FASDFEV-GECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR 130 (132)
T ss_pred CccceEEe--------ccccccC-CCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence 32221111 1233433 46799999999999988899999 9999999985
No 15
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.86 E-value=2.6e-21 Score=159.46 Aligned_cols=118 Identities=24% Similarity=0.456 Sum_probs=95.8
Q ss_pred EEEEEEcCcccccCCCCCCeeecCcceecCeeEEEEEEcCCCCCCCCCceEEEEEEecC---------CCceEEEEEEEE
Q 015560 20 SHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS---------EGTDVRALFELT 90 (404)
Q Consensus 20 ~~~w~I~~fs~~~~~~~~~~~~S~~f~~~g~~W~L~~~p~g~~~~~~~~~lslyL~~~~---------~~w~v~a~~~~~ 90 (404)
+|+|+|+|||.+ ++.+.|+.|.+||++|+|.+||+|... .+ ++|+||.+.+ .+|.+.|+|+|+
T Consensus 2 ~f~w~I~~fS~~-----~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~-~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~ 73 (134)
T cd03775 2 SFTWRIKNWSEL-----EKKVHSPKFKCGGFEWRILLFPQGNSQ--TG-GVSIYLEPHPEEEEKAPLDEDWSVCAQFALV 73 (134)
T ss_pred cEEEEECCcccC-----CcceeCCCEEECCeeEEEEEeCCCCCC--CC-eEEEEEEecCcccccccCCCCCeEEEEEEEE
Confidence 599999999995 368999999999999999999999754 44 9999999852 368899999999
Q ss_pred EEeCCCCCccceeeccccccccCCcccccCCCccCceeEEeccccc------cccCcCCCceEEEEEee
Q 015560 91 LVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLE------TSDYIKDDCLLINCTVG 153 (404)
Q Consensus 91 lln~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~l~------~~~~l~dd~l~i~~~v~ 153 (404)
|+|+.+....... ...+.|......|||.+||++++|+ ++|||+||+|+|++.|.
T Consensus 74 l~n~~~~~~~~~~--------~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 74 ISNPGDPSIQLSN--------VAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred EEcCCCCccceEc--------cceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 9999744321111 1235666566789999999999997 47999999999999873
No 16
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.86 E-value=3.7e-21 Score=161.59 Aligned_cols=133 Identities=24% Similarity=0.430 Sum_probs=100.5
Q ss_pred eEEEEEEcCccccc-CCCCCCeeecCcc-eecCeeEEEEEEcCCCCCCCCCceEEEEEEecC------CCce-EEEEEEE
Q 015560 19 GSHQFTVKGYSLAK-GMGPGKCLSSDVF-TVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS------EGTD-VRALFEL 89 (404)
Q Consensus 19 ~~~~w~I~~fs~~~-~~~~~~~~~S~~f-~~~g~~W~L~~~p~g~~~~~~~~~lslyL~~~~------~~w~-v~a~~~~ 89 (404)
..|+|+|.|||.++ +++.++.++||+| .+|||+|+|++||||.+. .++ ||||||++.. ..|+ +.++++|
T Consensus 2 p~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~-~lSlyL~L~~g~~d~~L~WP~v~a~~t~ 79 (167)
T cd03771 2 PEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPG-YTGLYFHLCSGENDDVLEWPCPNRQATM 79 (167)
T ss_pred CeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCC-cceEEEEEecCCccccccCcceeEEEEE
Confidence 57999999999986 6788999999998 999999999999999887 666 9999999963 2588 6899999
Q ss_pred EEEeCCCCCccceeec--cccccc--c---CCccc----------c-------cCCCccCceeEEeccccccccCcCCCc
Q 015560 90 TLVDQSGKGKHKVHSH--FDRALE--S---GPYTL----------K-------YRGSMWGYKRFFKRTSLETSDYIKDDC 145 (404)
Q Consensus 90 ~lln~~~~~~~~~~~~--~~~~~~--~---~~~~f----------~-------~~~~~~G~~~fi~~~~l~~~~~l~dd~ 145 (404)
+|+||..+.....+.+ +..... + ....| . .++.+|||+.||++++|+..+||+||+
T Consensus 80 ~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk~dt 159 (167)
T cd03771 80 TLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLKGDD 159 (167)
T ss_pred EEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCcCCE
Confidence 9999974222111111 111100 0 00001 1 145589999999999999888999999
Q ss_pred eEEEEEee
Q 015560 146 LLINCTVG 153 (404)
Q Consensus 146 l~i~~~v~ 153 (404)
|.|+++++
T Consensus 160 l~i~~~~~ 167 (167)
T cd03771 160 LIILLDFE 167 (167)
T ss_pred EEEEEEeC
Confidence 99998863
No 17
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.81 E-value=3.8e-19 Score=148.15 Aligned_cols=136 Identities=20% Similarity=0.327 Sum_probs=100.5
Q ss_pred eeeeEEEEEEcCcccccCC---CCCCeeecCcceec--CeeEEEEEEcCCCCCCCCCceEEEEEEecC------CCceEE
Q 015560 16 TVNGSHQFTVKGYSLAKGM---GPGKCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALAS------EGTDVR 84 (404)
Q Consensus 16 ~~~~~~~w~I~~fs~~~~~---~~~~~~~S~~f~~~--g~~W~L~~~p~g~~~~~~~~~lslyL~~~~------~~w~v~ 84 (404)
...|.++|+|.||+.+..- +....++||+|..+ ||+|+|++||||++.+.+. |||+|+++.. -.|++.
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~-~LSly~~l~~Ge~D~~L~WPf~ 94 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGT-HLSLFFVVMKGPNDALLRWPFN 94 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCC-EEEEEEEEecCCcCcccCCcee
Confidence 4579999999999976552 22347899999764 8999999999999887777 9999999872 479999
Q ss_pred EEEEEEEEeCCCCCccceeec-cccccccCCcccccCCCccCceeEEecccccc-ccCcCCCceEEEEEee
Q 015560 85 ALFELTLVDQSGKGKHKVHSH-FDRALESGPYTLKYRGSMWGYKRFFKRTSLET-SDYIKDDCLLINCTVG 153 (404)
Q Consensus 85 a~~~~~lln~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~~G~~~fi~~~~l~~-~~~l~dd~l~i~~~v~ 153 (404)
.+++|+|+||.+. .+..... .+....+...-....+.+|||+.|++.++|.. .+||+||++.|+|.|.
T Consensus 95 ~~itl~llDQ~~r-~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~Vd 164 (164)
T cd03778 95 QKVTLMLLDQNNR-EHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIVD 164 (164)
T ss_pred eEEEEEEECCCCC-CcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEEC
Confidence 9999999999742 2222111 01110011001122355799999999999974 7999999999999873
No 18
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.81 E-value=6.8e-19 Score=164.64 Aligned_cols=176 Identities=30% Similarity=0.446 Sum_probs=155.4
Q ss_pred cCCCCCchHHHHHHHhhcCCCCCEEEEeCC-----ceehhhHHHHHhcCHHHHHHhcccccCCCCCcEEeCCCCHHHHHH
Q 015560 167 IPVPPSDMGQGLKDLLESEIGCDIVFEVGD-----ETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKA 241 (404)
Q Consensus 167 ~~~~~~~l~~~l~~l~~~~~~sDv~l~v~~-----~~~~ahk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~ 241 (404)
.+.+.++....+..+++++..+||.++|++ +.++|||.+||..|.+|.+||++++.+....+|.++|+.+.+|..
T Consensus 94 wq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~ 173 (521)
T KOG2075|consen 94 WQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLA 173 (521)
T ss_pred cccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHH
Confidence 445567788888899999999999999974 689999999999999999999999999988899999999999999
Q ss_pred HHHhhhcCCCCCcccccCCCCcccchHHHHHHHHHhhhcChhhHHHHHHHHHHccCChhhHHHHHHH-HHhCCChHHHHH
Q 015560 242 MLLFIYTDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLAL-AEQHQCPQLKAI 320 (404)
Q Consensus 242 ~L~~iYt~~~~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~~~~l~~~c~~~L~~~i~~~n~~~~l~~-A~~~~~~~L~~~ 320 (404)
+|+|||.+.+.. ..+++..+|.+|++|.++.|.+.|.++|...+..+|++..|-- |..++-.+|...
T Consensus 174 ~L~flYsdev~~------------~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~ 241 (521)
T KOG2075|consen 174 FLRFLYSDEVKL------------AADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISI 241 (521)
T ss_pred HHHHHhcchhhh------------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHH
Confidence 999999988874 4689999999999999999999999999998888877655555 999999999999
Q ss_pred HHHHhcCCCCHHHHhccccchhhHhhChHHHHHHHHH
Q 015560 321 CLKFAATPANLGVIMQSEGFKHLEESCPSLLSELLKT 357 (404)
Q Consensus 321 ~~~~i~~~~~~~~~~~~~~f~~l~~~~p~l~~ell~~ 357 (404)
|++.|. .+++..+..++|.++... -+...++++.
T Consensus 242 c~e~id--~~~~~al~~EGf~did~~-~dt~~evl~r 275 (521)
T KOG2075|consen 242 CLEVID--KSFEDALTPEGFCDIDST-RDTYEEVLRR 275 (521)
T ss_pred HHHHhh--hHHHhhhCccceeehhhH-HHHHHHHHhh
Confidence 999999 999999999999998754 3344444443
No 19
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.80 E-value=3.2e-19 Score=148.22 Aligned_cols=167 Identities=24% Similarity=0.330 Sum_probs=139.4
Q ss_pred CCchHHHHHHHhhcCCCCCEEEEeCC---ceehhhHHHHHhcCHHHHHHhcccccCCCCCcEEeCCCCHHHHHHHHHhhh
Q 015560 171 PSDMGQGLKDLLESEIGCDIVFEVGD---ETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIY 247 (404)
Q Consensus 171 ~~~l~~~l~~l~~~~~~sDv~l~v~~---~~~~ahk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iY 247 (404)
++.++.-...+++.+.++|++|.++| +.++|||.|||+||.+.+-. ++- .....+..+.|+++++|..+++|||
T Consensus 50 ~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wkfa--N~~-dekse~~~~dDad~Ea~~t~iRWIY 126 (280)
T KOG4591|consen 50 ISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFA--NGG-DEKSEELDLDDADFEAFHTAIRWIY 126 (280)
T ss_pred HHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhhc--cCC-CcchhhhcccccCHHHHHHhheeee
Confidence 46677778899999999999999984 78999999999999987633 221 2234567889999999999999999
Q ss_pred cCCCCCcccccCCCCcccchHHHHHHHHHhhhcChhhHHHHHHHHHHccCChhhHHHHHHHHHhCCChHHHHHHHHHhcC
Q 015560 248 TDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAAT 327 (404)
Q Consensus 248 t~~~~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~~~~l~~~c~~~L~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~ 327 (404)
|+.+..-. ..+.+.+|.++|++|+++-|+..|+..+...++.+||+.++++|++.++..|...|...|+
T Consensus 127 TDEidfk~----------dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA- 195 (280)
T KOG4591|consen 127 TDEIDFKE----------DDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIA- 195 (280)
T ss_pred cccccccc----------chHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHH-
Confidence 99988653 2478899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhccccchhhHhhChHHHHHHHH
Q 015560 328 PANLGVIMQSEGFKHLEESCPSLLSELLK 356 (404)
Q Consensus 328 ~~~~~~~~~~~~f~~l~~~~p~l~~ell~ 356 (404)
.++..+-.. +|.++ .|.++..++.
T Consensus 196 -~~W~dL~~a-~FaqM---s~aLLYklId 219 (280)
T KOG4591|consen 196 -GAWDDLGKA-DFAQM---SAALLYKLID 219 (280)
T ss_pred -hhccccChH-HHHhc---cHHHHHHHHc
Confidence 887766544 34444 4556666554
No 20
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.79 E-value=1.9e-18 Score=140.72 Aligned_cols=120 Identities=36% Similarity=0.657 Sum_probs=95.5
Q ss_pred eEEEEEEcCcccccCCCCCCeeecCcceecCeeEEEEEEcCCCCCCCCCceEEEEEEecC-----CCceEEEEEEEEEEe
Q 015560 19 GSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS-----EGTDVRALFELTLVD 93 (404)
Q Consensus 19 ~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~g~~W~L~~~p~g~~~~~~~~~lslyL~~~~-----~~w~v~a~~~~~lln 93 (404)
++|+|+|.+|+. ..++.++||.|.++|++|+|.+||+|... .++ ++|+||.|.. ..|.+.++++|+|+|
T Consensus 1 ~~~~~~i~~~~~----~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~-~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~ 74 (126)
T cd00121 1 GKHTWKIVNFSE----LEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGD-YLSLYLELDKGESDLEKWSVRAEFTLKLVN 74 (126)
T ss_pred CEEEEEECCCCC----CCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCC-EEEEEEEecCCCCCCCCCcEEEEEEEEEEC
Confidence 479999999998 34679999999999999999999999765 344 9999999973 359999999999999
Q ss_pred CCCCCccceeeccccccccCCccc-ccCCCccCceeEEeccccccccCcCCCceEEEEEee
Q 015560 94 QSGKGKHKVHSHFDRALESGPYTL-KYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVG 153 (404)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~~G~~~fi~~~~l~~~~~l~dd~l~i~~~v~ 153 (404)
+++.+...... ...+ .....+||+.+||+|++|.+..++.||+|+|+|+|.
T Consensus 75 ~~~~~~~~~~~---------~~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 75 QNGGKSLSKSF---------THVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK 126 (126)
T ss_pred CCCCccceEec---------cCCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence 98332211111 1122 244678999999999999966559999999999874
No 21
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.79 E-value=2.7e-19 Score=142.72 Aligned_cols=108 Identities=38% Similarity=0.565 Sum_probs=94.1
Q ss_pred HHHHhhcCCCCCEEEEeC-CceehhhHHHHHhcCHHHHHHhccc-ccCCCCCcEEeCCCCHHHHHHHHHhhhcCCCCCcc
Q 015560 178 LKDLLESEIGCDIVFEVG-DETFKAHKLILAARSPVFRAQFYGL-VGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVY 255 (404)
Q Consensus 178 l~~l~~~~~~sDv~l~v~-~~~~~ahk~iLa~~S~~F~~~f~~~-~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~ 255 (404)
|+++++++.++|++|.++ +++|+|||.+|+++|+||+.||.+. +.+....+|.++++++++|..+|+|+|++.+...
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~- 79 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN- 79 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCC-
Confidence 467888999999999999 8999999999999999999999988 5666666799999999999999999999988743
Q ss_pred cccCCCCcccchHHHHHHHHHhhhcChhhHHHHHHHHHHcc
Q 015560 256 EITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEE 296 (404)
Q Consensus 256 ~~~~~~~~~~~~~~~~~ll~~Ad~~~~~~l~~~c~~~L~~~ 296 (404)
+.+++.+++.+|++|+++.|+..|+.+|.++
T Consensus 80 ----------~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 ----------SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -----------TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 1478999999999999999999999998753
No 22
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.72 E-value=3.6e-17 Score=132.07 Aligned_cols=113 Identities=32% Similarity=0.573 Sum_probs=89.7
Q ss_pred EcCcccccCCCCCCeeecCcceecCeeEEEEEEcCCCCCCCCCceEEEEEEecC------CCceEEEEEEEEEEeCCCCC
Q 015560 25 VKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS------EGTDVRALFELTLVDQSGKG 98 (404)
Q Consensus 25 I~~fs~~~~~~~~~~~~S~~f~~~g~~W~L~~~p~g~~~~~~~~~lslyL~~~~------~~w~v~a~~~~~lln~~~~~ 98 (404)
|+|||.++. .+..+.|+.|.++|++|+|.+||+|+ ++ ++++||.|.. ..|++.++++++++++.|..
T Consensus 1 i~nfs~l~~--~~~~~~s~~~~~~g~~W~l~~~~~~~----~~-~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 73 (119)
T PF00917_consen 1 IKNFSKLKE--GEEYSSSFVFSHGGYPWRLKVYPKGN----GK-YLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS 73 (119)
T ss_dssp ETTGGGHHT--SEEEEEEEESSTTSEEEEEEEETTES----TT-EEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE
T ss_pred CcccceEeC--CCcEECCCeEEECCEEEEEEEEeCCC----cC-cEEEEEEEeecccccccceeeeEEEEEEEecCCCCc
Confidence 789999883 23455569999999999999999997 33 9999999982 38999999999999998765
Q ss_pred ccceeeccccccccCCcccccCCCccCceeEEeccccccccCcCCCceEEEEEeee
Q 015560 99 KHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGV 154 (404)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~l~~~~~l~dd~l~i~~~v~i 154 (404)
..+... .+.|.. ..+|||.+|++|++|.+..|+.||+++|+|+|+|
T Consensus 74 ~~~~~~---------~~~F~~-~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 74 ISKRIK---------SHSFNN-PSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEEEE---------CEEECT-TSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred ceeeee---------eeEEee-ecccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence 211111 234433 3789999999999999666899999999999986
No 23
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.68 E-value=1.7e-16 Score=145.38 Aligned_cols=152 Identities=21% Similarity=0.300 Sum_probs=138.1
Q ss_pred HHHHhhcCCCCCEEEEeCCceehhhHHHHHhcCHHHHHHhcccccCCCCCcEEeC----CCCHHHHHHHHHhhhcCCCCC
Q 015560 178 LKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVK----DVEPSIFKAMLLFIYTDKFPD 253 (404)
Q Consensus 178 l~~l~~~~~~sDv~l~v~~~~~~ahk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~----d~~~~~f~~~L~~iYt~~~~~ 253 (404)
+..++.++.-+||++.+-|.+.+.||..|. +|+||++||+|-+.|++.+.|.++ .++..++...+.=+|.+.+.
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve- 137 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE- 137 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-
Confidence 456788999999999999999999999998 999999999999999999987663 58999999999999999998
Q ss_pred cccccCCCCcccchHHHHHHHHHhhhcChhhHHHHHHHHHHccCChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCCHHH
Q 015560 254 VYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGV 333 (404)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~ll~~Ad~~~~~~l~~~c~~~L~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~ 333 (404)
+..+.+..+|++|..++++.|.+.|.+.+++.+++++++..+..|.+|+++.+++.|++.+. .|+-.
T Consensus 138 -----------I~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~--~nl~~ 204 (488)
T KOG4682|consen 138 -----------IKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLL--NNLMT 204 (488)
T ss_pred -----------ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHH--HhhHh
Confidence 55789999999999999999999999999999999999999999999999999999999999 88877
Q ss_pred HhccccchhhH
Q 015560 334 IMQSEGFKHLE 344 (404)
Q Consensus 334 ~~~~~~f~~l~ 344 (404)
+....-+.+++
T Consensus 205 i~~~q~l~ei~ 215 (488)
T KOG4682|consen 205 IQNVQLLKEIS 215 (488)
T ss_pred hhhHHHHHhcC
Confidence 77666443333
No 24
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.66 E-value=3.7e-16 Score=118.95 Aligned_cols=90 Identities=40% Similarity=0.625 Sum_probs=83.0
Q ss_pred CEEEEeCCceehhhHHHHHhcCHHHHHHhcccccCCCCCcEEeCCCCHHHHHHHHHhhhcCCCCCcccccCCCCcccchH
Q 015560 189 DIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTN 268 (404)
Q Consensus 189 Dv~l~v~~~~~~ahk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~ 268 (404)
|++|.++|+.|++||.+|+++|+||++||.+++.+.....+.+++.++++|+.+|+|+|++.+... ..
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~------------~~ 68 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLP------------EE 68 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecC------------HH
Confidence 789999999999999999999999999999888877788899999999999999999999988743 46
Q ss_pred HHHHHHHHhhhcChhhHHHHHH
Q 015560 269 MVQHLLAAADLYNVDRLKLLCE 290 (404)
Q Consensus 269 ~~~~ll~~Ad~~~~~~l~~~c~ 290 (404)
++.+++.+|++|+++.|+..|+
T Consensus 69 ~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 69 NVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHHHHHHHCcHHHHhhhC
Confidence 8999999999999999999884
No 25
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.64 E-value=1.5e-15 Score=125.13 Aligned_cols=132 Identities=20% Similarity=0.373 Sum_probs=97.7
Q ss_pred eEEEEEEcCcccccC-CCCCCeeecCccee-cCeeEEEEEEcCCCCCCCCCceEEEEEEecC------CCceEE-EEEEE
Q 015560 19 GSHQFTVKGYSLAKG-MGPGKCLSSDVFTV-GGYDWAIYFYPDGKNPEDGALYVSVFIALAS------EGTDVR-ALFEL 89 (404)
Q Consensus 19 ~~~~w~I~~fs~~~~-~~~~~~~~S~~f~~-~g~~W~L~~~p~g~~~~~~~~~lslyL~~~~------~~w~v~-a~~~~ 89 (404)
..++|+|.||+.+.. .+.+..++||+|.. .||+.++++|+||.+.+ +. |||||+++.. -.|++. .++++
T Consensus 2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~-~lsl~~~lm~Ge~D~~L~WPf~~~qit~ 79 (167)
T cd03782 2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PG-NLAIYLHLTSGPNDDQLQWPCPWQQATM 79 (167)
T ss_pred CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CC-EEEEEEEEeccCCCccccCCCcCCeEEE
Confidence 468999999997655 35677899999965 59999999999999865 55 9999999973 369999 89999
Q ss_pred EEEeCCCCCccceeec----cccccccC---Cc-----------------ccccCCCccCceeEEeccccccccCcCCCc
Q 015560 90 TLVDQSGKGKHKVHSH----FDRALESG---PY-----------------TLKYRGSMWGYKRFFKRTSLETSDYIKDDC 145 (404)
Q Consensus 90 ~lln~~~~~~~~~~~~----~~~~~~~~---~~-----------------~f~~~~~~~G~~~fi~~~~l~~~~~l~dd~ 145 (404)
+|+||+.+.....+.. +.....+. .+ ...+++.++|++.||+++.|+...||+||.
T Consensus 80 ~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~r~yikdD~ 159 (167)
T cd03782 80 MLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRSRDFIKGDD 159 (167)
T ss_pred EEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhhcCcccCCe
Confidence 9999975222212111 11111111 11 011236789999999999999899999999
Q ss_pred eEEEEEe
Q 015560 146 LLINCTV 152 (404)
Q Consensus 146 l~i~~~v 152 (404)
+.|-+++
T Consensus 160 ifi~~~~ 166 (167)
T cd03782 160 VIFLLTM 166 (167)
T ss_pred EEEEEec
Confidence 9987765
No 26
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.63 E-value=1.5e-15 Score=125.92 Aligned_cols=133 Identities=22% Similarity=0.386 Sum_probs=96.2
Q ss_pred eEEEEEEcCcccccC-CCCCCeeecCcceec-CeeEEEEEEcCCCCC-CCCCceEEEEEEecC------CCceE-EEEEE
Q 015560 19 GSHQFTVKGYSLAKG-MGPGKCLSSDVFTVG-GYDWAIYFYPDGKNP-EDGALYVSVFIALAS------EGTDV-RALFE 88 (404)
Q Consensus 19 ~~~~w~I~~fs~~~~-~~~~~~~~S~~f~~~-g~~W~L~~~p~g~~~-~~~~~~lslyL~~~~------~~w~v-~a~~~ 88 (404)
..++|+|.||+.+.. ...+..++||+|... ||..+|++|+||++. +.+. |+|||+++.. -.|++ .-+++
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~-~lSl~~~lm~Ge~D~~L~WP~~~~~it 80 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGN-YTGLYFHLCSGENDAVLEWPALNRQAI 80 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCC-EEEEEEEEecccCCCcccCCCcCCEEE
Confidence 458999999997554 346778999999875 999999999999874 4455 9999999973 36995 56999
Q ss_pred EEEEeCCCCCccceee--cccccc--ccC----Cccc--------------ccCCCccCceeEEeccccccccCcCCCce
Q 015560 89 LTLVDQSGKGKHKVHS--HFDRAL--ESG----PYTL--------------KYRGSMWGYKRFFKRTSLETSDYIKDDCL 146 (404)
Q Consensus 89 ~~lln~~~~~~~~~~~--~~~~~~--~~~----~~~f--------------~~~~~~~G~~~fi~~~~l~~~~~l~dd~l 146 (404)
|+|+||+.+.....+. .+.... .+. ...| ..++.++||+.|++++.|+..+||+||++
T Consensus 81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdDtl 160 (167)
T cd03783 81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKNDDL 160 (167)
T ss_pred EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCCeE
Confidence 9999997422211111 011000 000 0001 12466899999999999999999999999
Q ss_pred EEEEEe
Q 015560 147 LINCTV 152 (404)
Q Consensus 147 ~i~~~v 152 (404)
.|.+++
T Consensus 161 fI~~~~ 166 (167)
T cd03783 161 IIFVDF 166 (167)
T ss_pred EEEEec
Confidence 998875
No 27
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.63 E-value=5.1e-16 Score=153.09 Aligned_cols=166 Identities=22% Similarity=0.329 Sum_probs=134.9
Q ss_pred CCCCEEEEe-CCceehhhHHHHHhcCHHHHHHhcccccCCCCCcEEeCCCCHHHHHHHHHhhhc-CCCCCcccccCCCCc
Q 015560 186 IGCDIVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYT-DKFPDVYEITGTTSM 263 (404)
Q Consensus 186 ~~sDv~l~v-~~~~~~ahk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt-~~~~~~~~~~~~~~~ 263 (404)
..-|+.|.. +|+.+.|||++|++|+.||..||..-+.|+..-.+.+..+..+.+..+|+|+|. +......+.
T Consensus 709 e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~------ 782 (1267)
T KOG0783|consen 709 ETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDL------ 782 (1267)
T ss_pred cceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhcc------
Confidence 344666666 677799999999999999999999988888876666666779999999999994 433322211
Q ss_pred ccchHHHHHHHHHhhhcChhhHHHHHHHHHHccCChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCCHHHHhccccchhh
Q 015560 264 CTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGVIMQSEGFKHL 343 (404)
Q Consensus 264 ~~~~~~~~~ll~~Ad~~~~~~l~~~c~~~L~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~f~~l 343 (404)
-..+.+-++|.+||.|.+.+|+..||..|.+.++..++..++++|..|++..|+..|++||+ .|+..++.-.....+
T Consensus 783 -~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic--~N~~~~Learsi~~~ 859 (1267)
T KOG0783|consen 783 -KESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFIC--HNIEFFLEARSISEW 859 (1267)
T ss_pred -chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHH--HhHHHHHHhccHhhh
Confidence 11346789999999999999999999999999999999999999999999999999999999 999999887766665
Q ss_pred HhhChHHHHHHHHHHhc
Q 015560 344 EESCPSLLSELLKTLAS 360 (404)
Q Consensus 344 ~~~~p~l~~ell~~~~~ 360 (404)
...+.--+.+.++++++
T Consensus 860 dg~~LK~l~~~yrkm~~ 876 (1267)
T KOG0783|consen 860 DGFHLKKLAQRYRKMLS 876 (1267)
T ss_pred cchHHHHHHHHHHHHhh
Confidence 55543344555666655
No 28
>smart00061 MATH meprin and TRAF homology.
Probab=99.53 E-value=4.1e-14 Score=109.19 Aligned_cols=89 Identities=24% Similarity=0.366 Sum_probs=71.2
Q ss_pred EEEEEcCcccccCCCCCCeeecCcceecCeeEEEEEEcCCCCCCCCCceEEEEEEecC-----CCceEEEEEEEEEEeCC
Q 015560 21 HQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS-----EGTDVRALFELTLVDQS 95 (404)
Q Consensus 21 ~~w~I~~fs~~~~~~~~~~~~S~~f~~~g~~W~L~~~p~g~~~~~~~~~lslyL~~~~-----~~w~v~a~~~~~lln~~ 95 (404)
++|+|+||+.+. .++.++|++|.++|++|+|.+||++ +++|+||.|.. ..|++.|+++++|+|++
T Consensus 2 ~~~~~~~~~~~~---~~~~~~S~~f~~~g~~W~i~~~p~~-------~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~ 71 (95)
T smart00061 2 LSHTFKNVSRLE---EGESYFSPSEEHFNIPWRLKIYRKN-------GFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQN 71 (95)
T ss_pred ceeEEEchhhcc---cCceEeCChhEEcCceeEEEEEEcC-------CEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCC
Confidence 579999999874 3789999999999999999999993 29999999972 26899999999999998
Q ss_pred CCCccceeeccccccccCCcccccCCCccCceeEE
Q 015560 96 GKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFF 130 (404)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi 130 (404)
|..... . ..+.|.. ..+|||.+||
T Consensus 72 ~~~~~~---~-------~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 72 GKSLSK---K-------DKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CCEEee---e-------eeEEEcC-CCccceeeEC
Confidence 754311 1 2345544 6789998885
No 29
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.41 E-value=1.5e-12 Score=122.42 Aligned_cols=237 Identities=23% Similarity=0.297 Sum_probs=175.0
Q ss_pred EEEcCcccccCCCCCCeeecCcceecCeeEEEEEEcCCCCCCCCCceEEEEEEecCC-CceEEEEEEEEEEeCCCCCc-c
Q 015560 23 FTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE-GTDVRALFELTLVDQSGKGK-H 100 (404)
Q Consensus 23 w~I~~fs~~~~~~~~~~~~S~~f~~~g~~W~L~~~p~g~~~~~~~~~lslyL~~~~~-~w~v~a~~~~~lln~~~~~~-~ 100 (404)
|.|.+|+... ..++|..|..+|..|++.+||+|+ +++.|+..... +|.+.+++.+.+.|+..... .
T Consensus 8 ~~~~~~~~~~-----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~v~n~~~~~~~~ 75 (297)
T KOG1987|consen 8 WVISNFSSVG-----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSPGWERYAKLRLTVVNQKSEKYLS 75 (297)
T ss_pred eeeccCcchh-----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCCCcceeEEEEEEEccCCCcceee
Confidence 9999988765 578899999999999999999995 58888877532 89999999999999975421 1
Q ss_pred ceeeccccccccCCcccccCCCccCceeEEeccccccccCcCCCceEEEEEeeeeeccccCCCCcccCCCCCchHHHHHH
Q 015560 101 KVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKD 180 (404)
Q Consensus 101 ~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~l~~~~~l~dd~l~i~~~v~i~~~~~~~~~~~~~~~~~~~l~~~l~~ 180 (404)
..... .....+......||+..++....+. .|
T Consensus 76 ~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~------------~~------------------------------ 107 (297)
T KOG1987|consen 76 TVEEG------FSWFRFNKVLKEWGFGKMLPLTLLI------------DC------------------------------ 107 (297)
T ss_pred eeeee------EEeccccccccccCcccccChHHhh------------cc------------------------------
Confidence 00000 0000010012234432222211111 00
Q ss_pred HhhcCCCCCEEEEeCCceehhhHHHHHhcCHHHHHHhcccccCCCCCcEEeCCCCHHHHHHHHHhhhcCCCCCcccccCC
Q 015560 181 LLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGT 260 (404)
Q Consensus 181 l~~~~~~sDv~l~v~~~~~~ahk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~ 260 (404)
.++.+.+|+.+++++|++|++|+.....+.....+.+.+..++.++.+..|.|.......
T Consensus 108 --------------~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~------ 167 (297)
T KOG1987|consen 108 --------------SNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSS------ 167 (297)
T ss_pred --------------cCcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHH------
Confidence 155589999999999999999998877666667778889999999999999998665522
Q ss_pred CCcccchHHHH---HHHHHhhhcChhhHHHHHHHHHHccCChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCCHHHHhcc
Q 015560 261 TSMCTTTNMVQ---HLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGVIMQS 337 (404)
Q Consensus 261 ~~~~~~~~~~~---~ll~~Ad~~~~~~l~~~c~~~L~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~ 337 (404)
.+... .++..|+++....++..|...+...+...++...++.+..+++..+...|..++.....+..+...
T Consensus 168 ------~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~ 241 (297)
T KOG1987|consen 168 ------VERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKK 241 (297)
T ss_pred ------HHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHH
Confidence 23343 788899999999999999999999888889889999999999999999999999954577777765
Q ss_pred ccchhhHh
Q 015560 338 EGFKHLEE 345 (404)
Q Consensus 338 ~~f~~l~~ 345 (404)
.++....+
T Consensus 242 ~~~~~~k~ 249 (297)
T KOG1987|consen 242 LNEVKEKK 249 (297)
T ss_pred HHHHHHhh
Confidence 65544443
No 30
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=8.2e-12 Score=122.88 Aligned_cols=173 Identities=20% Similarity=0.333 Sum_probs=124.3
Q ss_pred eeeeeeEEEEEEcCcccccCCCCCCeeecCcceecCeeEEEEEEcCCCCCCCCCceEEEEEEecC--------CCceEEE
Q 015560 14 NETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS--------EGTDVRA 85 (404)
Q Consensus 14 ~~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~g~~W~L~~~p~g~~~~~~~~~lslyL~~~~--------~~w~v~a 85 (404)
.+...-+++|+|++|+.+.+ .+.||+|.+||++|+|.++|+|++.. .++|||.... ..|.|.|
T Consensus 34 Ee~~~~sftW~vk~wsel~~-----k~~Sp~F~vg~~twki~lfPqG~nq~----~~sVyLe~~pqe~e~~~gk~~~cca 104 (1089)
T COG5077 34 EELLEMSFTWKVKRWSELAK-----KVESPPFSVGGHTWKIILFPQGNNQC----NVSVYLEYEPQELEETGGKYYDCCA 104 (1089)
T ss_pred HHHhhcccceecCChhhhhh-----hccCCcccccCeeEEEEEecccCCcc----ccEEEEEeccchhhhhcCcchhhhh
Confidence 35566789999999999874 67899999999999999999997543 4899998862 2389999
Q ss_pred EEEEEEEeCCCCCccceeeccccccccCCcccccCCCccCceeEEeccccc-----cccCcCCCceEEEEEeeeeecccc
Q 015560 86 LFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLE-----TSDYIKDDCLLINCTVGVVRNRLE 160 (404)
Q Consensus 86 ~~~~~lln~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~l~-----~~~~l~dd~l~i~~~v~i~~~~~~ 160 (404)
+|.|.|-|...+... ..+.+.++|......|||.+|+....+. -..|+.+|++.|.+.|.|.++..
T Consensus 105 qFaf~Is~p~~pti~--------~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPT- 175 (1089)
T COG5077 105 QFAFDISNPKYPTIE--------YINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPT- 175 (1089)
T ss_pred heeeecCCCCCCchh--------hhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCc-
Confidence 999999988754321 2234678999999999999999988875 12589999999999999998421
Q ss_pred CCCCcccCCCCCchHHHHHHHhhcCCCCCEEEEeCCceehhhHHHHHhcCHHHHHHhc
Q 015560 161 GPKQYSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFY 218 (404)
Q Consensus 161 ~~~~~~~~~~~~~l~~~l~~l~~~~~~sDv~l~v~~~~~~ahk~iLa~~S~~F~~~f~ 218 (404)
-.+...+...=......=|-|.-.|.+=|.+..+ +|-||-+.|.
T Consensus 176 -----------GVLWHsF~nYnSKkeTGYVGlrNqGATCYmNSLl---Qslffi~~FR 219 (1089)
T COG5077 176 -----------GVLWHSFLNYNSKKETGYVGLRNQGATCYMNSLL---QSLFFIAKFR 219 (1089)
T ss_pred -----------cceeecccccccccceeeeeeccCCceeeHHHHH---HHHHHHHHHH
Confidence 2222222222112233335555566676666654 4556666554
No 31
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.71 E-value=2.1e-08 Score=100.20 Aligned_cols=121 Identities=25% Similarity=0.372 Sum_probs=81.0
Q ss_pred CCCCchHHHHHHHhhcC----CCCCEEEEeCCceehhhHHHHHhcCHHHHHHhcccccCCCC------------CcEEeC
Q 015560 169 VPPSDMGQGLKDLLESE----IGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNL------------DKVVVK 232 (404)
Q Consensus 169 ~~~~~l~~~l~~l~~~~----~~sDv~l~v~~~~~~ahk~iLa~~S~~F~~~f~~~~~e~~~------------~~i~l~ 232 (404)
.+.+.+...+..++... .+.||+|.||++.|+|||.||++||++|+.+|...-..+.. ..|.++
T Consensus 536 ~~ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve 615 (1267)
T KOG0783|consen 536 AASSNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVE 615 (1267)
T ss_pred cccccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeec
Confidence 34556677788877654 57899999999999999999999999999999643322211 225578
Q ss_pred CCCHHHHHHHHHhhhcCCCCCc--ccccCCCCccc-------chHHHHHHHHHhhhcChhhHHHHH
Q 015560 233 DVEPSIFKAMLLFIYTDKFPDV--YEITGTTSMCT-------TTNMVQHLLAAADLYNVDRLKLLC 289 (404)
Q Consensus 233 d~~~~~f~~~L~~iYt~~~~~~--~~~~~~~~~~~-------~~~~~~~ll~~Ad~~~~~~l~~~c 289 (404)
++.+..|+.+|+||||+..-.+ .+......... .......|.-++.+|++..|....
T Consensus 616 ~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~ 681 (1267)
T KOG0783|consen 616 DIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFS 681 (1267)
T ss_pred cCCHHHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhh
Confidence 9999999999999999854322 11000000000 122334477777777776665543
No 32
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.69 E-value=4e-08 Score=86.41 Aligned_cols=135 Identities=21% Similarity=0.343 Sum_probs=93.8
Q ss_pred CCchHHHHHHHhhcCCCCC-EEEEe-CC--------------ceehhhHHHHHhcCHHHHHHhcccccCCCC--------
Q 015560 171 PSDMGQGLKDLLESEIGCD-IVFEV-GD--------------ETFKAHKLILAARSPVFRAQFYGLVGDRNL-------- 226 (404)
Q Consensus 171 ~~~l~~~l~~l~~~~~~sD-v~l~v-~~--------------~~~~ahk~iLa~~S~~F~~~f~~~~~e~~~-------- 226 (404)
+..+..++..+++..-+.| +.+.+ +| .++.||+.|.++||++|+.++.....++..
T Consensus 219 ~kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~ 298 (401)
T KOG2838|consen 219 FKKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRR 298 (401)
T ss_pred chhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccC
Confidence 3567778888887664444 44444 22 479999999999999999999765544322
Q ss_pred -CcEEeCC-CCHHHHH-HHHHhhhcCCCCCcccc---------------cCC-CCcccchHHHHHHHHHhhhcChhhHHH
Q 015560 227 -DKVVVKD-VEPSIFK-AMLLFIYTDKFPDVYEI---------------TGT-TSMCTTTNMVQHLLAAADLYNVDRLKL 287 (404)
Q Consensus 227 -~~i~l~d-~~~~~f~-~~L~~iYt~~~~~~~~~---------------~~~-~~~~~~~~~~~~ll~~Ad~~~~~~l~~ 287 (404)
..|.+.+ +-|.+|. .+|.++||+.+.....- .+. ...+.....+.+|+.+|-.|.++-|.+
T Consensus 299 PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQ 378 (401)
T KOG2838|consen 299 PKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQ 378 (401)
T ss_pred CceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2366655 4455554 68999999987653211 101 111455778899999999999999999
Q ss_pred HHHHHHHccCChhhHHHH
Q 015560 288 LCESKLCEELNAETVATT 305 (404)
Q Consensus 288 ~c~~~L~~~i~~~n~~~~ 305 (404)
.|+..+......++...+
T Consensus 379 a~e~Vir~acaadlsn~c 396 (401)
T KOG2838|consen 379 ACEDVIRKACAADLSNGC 396 (401)
T ss_pred HHHHHHHhhhhhhccccc
Confidence 999999877665554433
No 33
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.58 E-value=2e-07 Score=85.65 Aligned_cols=134 Identities=14% Similarity=0.171 Sum_probs=109.4
Q ss_pred ceehhhHHHHHhcCHHHHHHhcccccCCCCCc----EEeCCCCHHHHHHHHHhhhcCCCCCcccccCCCCcccchHHHHH
Q 015560 197 ETFKAHKLILAARSPVFRAQFYGLVGDRNLDK----VVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTNMVQH 272 (404)
Q Consensus 197 ~~~~ahk~iLa~~S~~F~~~f~~~~~e~~~~~----i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~~~~~ 272 (404)
.+++||..+++ |..||+.||.|+|.|+..+. ..++.....+.+..|+|+|+++.... .+-+.+
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~------------~~~A~d 367 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDII------------FDVASD 367 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccch------------HHHHhh
Confidence 45999999998 88999999999999965332 55677788899999999999988743 578889
Q ss_pred HHHHhhhcChh---hHHHHHHHHHHcc---CChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCCHHHHhccccchhhHh
Q 015560 273 LLAAADLYNVD---RLKLLCESKLCEE---LNAETVATTLALAEQHQCPQLKAICLKFAATPANLGVIMQSEGFKHLEE 345 (404)
Q Consensus 273 ll~~Ad~~~~~---~l~~~c~~~L~~~---i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~f~~l~~ 345 (404)
++.+|+++.+. .|+..+...|++. ++.-++..++.++-......|...+..|+. .|+..+...+++....+
T Consensus 368 vll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a--~hl~~l~~dPe~~~~~~ 444 (516)
T KOG0511|consen 368 VLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEA--RHLLLLLPDPEGDSSLR 444 (516)
T ss_pred HHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhcCCchhhHHHH
Confidence 99999998665 2566666666654 344578999999999999999999999999 99999999998877544
No 34
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.34 E-value=2.5e-06 Score=75.05 Aligned_cols=97 Identities=22% Similarity=0.362 Sum_probs=81.7
Q ss_pred EEEEeCCceehhhHHHHHhcCHHHHHHhccccc-CCCCCcEEeCCCCHHHHHHHHHhhhcCCCCCcccccCCCCcccchH
Q 015560 190 IVFEVGDETFKAHKLILAARSPVFRAQFYGLVG-DRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTN 268 (404)
Q Consensus 190 v~l~v~~~~~~ahk~iLa~~S~~F~~~f~~~~~-e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~ 268 (404)
|.|.|||..|..++.-|.....+|++|+..++. +.+...-.+-|-+|..|..+|+||-.|.+..+ .+..
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LP----------e~~k 76 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLP----------ESEK 76 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCc----------cchH
Confidence 568899999999999999999999999988764 33333334447899999999999998888754 3467
Q ss_pred HHHHHHHHhhhcChhhHHHHHHHHHHcc
Q 015560 269 MVQHLLAAADLYNVDRLKLLCESKLCEE 296 (404)
Q Consensus 269 ~~~~ll~~Ad~~~~~~l~~~c~~~L~~~ 296 (404)
.+.+|+.=|.+|.++.|.+.|...|...
T Consensus 77 el~El~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 77 ELKELLREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence 8999999999999999999999988654
No 35
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.31 E-value=1.5e-06 Score=76.63 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=81.9
Q ss_pred CCCCCchHHHHHHHhhcCCCCCEEEEeCCceehhhHHHHHhcCHHHHHHhcccccCCC--CCcEEeCCCCHHHHHHHHHh
Q 015560 168 PVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRN--LDKVVVKDVEPSIFKAMLLF 245 (404)
Q Consensus 168 ~~~~~~l~~~l~~l~~~~~~sDv~l~v~~~~~~ahk~iLa~~S~~F~~~f~~~~~e~~--~~~i~l~d~~~~~f~~~L~~ 245 (404)
..+..++.+++....+-....|+-|+....-|+|||++|++|||+|+.+.+..-.... ...|..-+++.++|.++|++
T Consensus 111 R~ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~ 190 (401)
T KOG2838|consen 111 RKEANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHS 190 (401)
T ss_pred CcchhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHH
Confidence 3455678899998888778889999999999999999999999999999865422221 12366778999999999999
Q ss_pred hhcCCCCCcccccCCCCcccchHHHHHHHHHhhhcChh
Q 015560 246 IYTDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVD 283 (404)
Q Consensus 246 iYt~~~~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~~~ 283 (404)
+|+|.+-... ....+..-|-+++.-|+..
T Consensus 191 l~tgEfgmEd---------~~fqn~diL~QL~edFG~~ 219 (401)
T KOG2838|consen 191 LITGEFGMED---------LGFQNSDILEQLCEDFGCF 219 (401)
T ss_pred HHhcccchhh---------cCCchHHHHHHHHHhhCCc
Confidence 9999886443 2334566666666666654
No 36
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.90 E-value=1.2e-05 Score=61.69 Aligned_cols=88 Identities=24% Similarity=0.414 Sum_probs=65.6
Q ss_pred EEEEeCCceehhhHHHHH-hcCHHHHHHhccc---ccCCCCCcEEeCCCCHHHHHHHHHhhhc-CCCCCcccccCCCCcc
Q 015560 190 IVFEVGDETFKAHKLILA-ARSPVFRAQFYGL---VGDRNLDKVVVKDVEPSIFKAMLLFIYT-DKFPDVYEITGTTSMC 264 (404)
Q Consensus 190 v~l~v~~~~~~ahk~iLa-~~S~~F~~~f~~~---~~e~~~~~i~l~d~~~~~f~~~L~~iYt-~~~~~~~~~~~~~~~~ 264 (404)
|.|.|||+.|.+.+..|. ....+|..|+.+. ........+-| |-++..|+.+|+|+.+ +.++.+.
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~--------- 70 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPD--------- 70 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---T---------
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCC---------
Confidence 689999999999999999 5567899999754 33444455655 6899999999999999 5665432
Q ss_pred cchHHHHHHHHHhhhcChhhH-HHHH
Q 015560 265 TTTNMVQHLLAAADLYNVDRL-KLLC 289 (404)
Q Consensus 265 ~~~~~~~~ll~~Ad~~~~~~l-~~~c 289 (404)
......++.-|.+|+++.+ ++.|
T Consensus 71 --~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 71 --EICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp --TS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred --chhHHHHHHHHHHcCCCccccCCC
Confidence 2467899999999999998 6665
No 37
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.64 E-value=0.00023 Score=52.77 Aligned_cols=89 Identities=19% Similarity=0.309 Sum_probs=64.0
Q ss_pred EEEEe-CCceehhhHHHHHhcCHHHHHHhccc--ccCCCCCcEEeCCCCHHHHHHHHHhh-hcCCCCCcccccCCCCccc
Q 015560 190 IVFEV-GDETFKAHKLILAARSPVFRAQFYGL--VGDRNLDKVVVKDVEPSIFKAMLLFI-YTDKFPDVYEITGTTSMCT 265 (404)
Q Consensus 190 v~l~v-~~~~~~ahk~iLa~~S~~F~~~f~~~--~~e~~~~~i~l~d~~~~~f~~~L~~i-Yt~~~~~~~~~~~~~~~~~ 265 (404)
|.|+. +|.+|-+.|. +|.-|+-.++||+|+ +.++..+++.+.+++...++.+.+|+ |.-.+.... ......++
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s--~eiPeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSS--TEIPEFDI 95 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeecccc--ccCCCCCC
Confidence 55554 4566766665 456899999999865 45677788999999999999999998 443332221 01112237
Q ss_pred chHHHHHHHHHhhhcC
Q 015560 266 TTNMVQHLLAAADLYN 281 (404)
Q Consensus 266 ~~~~~~~ll~~Ad~~~ 281 (404)
.++.+.+||.+|+++.
T Consensus 96 ppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 96 PPEMALELLMAANYLE 111 (112)
T ss_pred CHHHHHHHHHHhhhhc
Confidence 7899999999999875
No 38
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.20 E-value=0.0019 Score=59.56 Aligned_cols=88 Identities=13% Similarity=0.264 Sum_probs=70.3
Q ss_pred ceehhhHHHHHhcCHHHHHHhcccccCC-CCCcEEeC-CCCHHHHHHHHHhhhcCCCCCcccccCCCCcccchHHHHHHH
Q 015560 197 ETFKAHKLILAARSPVFRAQFYGLVGDR-NLDKVVVK-DVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTNMVQHLL 274 (404)
Q Consensus 197 ~~~~ahk~iLa~~S~~F~~~f~~~~~e~-~~~~i~l~-d~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~~~~~ll 274 (404)
+.|.+.+.+|-..=.||+..+.....++ ...+|+|. ..|..+|+-+++|+...... +++.|+.-||
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~------------l~~~NvvsIl 81 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPS------------LTPSNVVSIL 81 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCc------------CCcCcEEEeE
Confidence 6799999999999999999996522122 22335554 47889999999999984433 5678999999
Q ss_pred HHhhhcChhhHHHHHHHHHHcc
Q 015560 275 AAADLYNVDRLKLLCESKLCEE 296 (404)
Q Consensus 275 ~~Ad~~~~~~l~~~c~~~L~~~ 296 (404)
.-|++++|+.|.+.|..|+..+
T Consensus 82 iSS~FL~M~~Lve~cl~y~~~~ 103 (317)
T PF11822_consen 82 ISSEFLQMESLVEECLQYCHDH 103 (317)
T ss_pred ehhhhhccHHHHHHHHHHHHHh
Confidence 9999999999999999998554
No 39
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.83 E-value=0.0058 Score=47.66 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=46.2
Q ss_pred EEEEe-CCceehhhHHHHHhcCHHHHHHhcccccC-CCCCcEEeCCCCHHHHHHHHHhhhcC
Q 015560 190 IVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGD-RNLDKVVVKDVEPSIFKAMLLFIYTD 249 (404)
Q Consensus 190 v~l~v-~~~~~~ahk~iLa~~S~~F~~~f~~~~~e-~~~~~i~l~d~~~~~f~~~L~~iYt~ 249 (404)
|+|.. +|.+|.+.+.+.. +|..++.|+.+...+ .....|.+++++..+++.+++|++..
T Consensus 4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h 64 (104)
T smart00512 4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHH 64 (104)
T ss_pred EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHc
Confidence 55664 7789999999775 999999999653222 22257999999999999999999643
No 40
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=96.58 E-value=0.0063 Score=57.80 Aligned_cols=93 Identities=20% Similarity=0.338 Sum_probs=71.5
Q ss_pred CEEEEeCCceehhhHHHHHhcC--HHHHHHhcccccCCCCCc-EEeCCCCHHHHHHHHHhhhcCCCCCcccccCCCCccc
Q 015560 189 DIVFEVGDETFKAHKLILAARS--PVFRAQFYGLVGDRNLDK-VVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCT 265 (404)
Q Consensus 189 Dv~l~v~~~~~~ahk~iLa~~S--~~F~~~f~~~~~e~~~~~-i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~ 265 (404)
=|.|.|+|+.|...+.-|+... .+|.+++.+++.-.+... ..+-|-+|+.|..+|+||.|++++...
T Consensus 12 ~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g---------- 81 (465)
T KOG2714|consen 12 RVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASG---------- 81 (465)
T ss_pred eEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCcc----------
Confidence 3788899999999999999776 699999988765443333 455578999999999999999999643
Q ss_pred chHHHHH-HHHHhhhcChhhHHH---HHHHHH
Q 015560 266 TTNMVQH-LLAAADLYNVDRLKL---LCESKL 293 (404)
Q Consensus 266 ~~~~~~~-ll~~Ad~~~~~~l~~---~c~~~L 293 (404)
..... |+.=|.+|++.+|.+ +|+..+
T Consensus 82 --~~~~~llhdEA~fYGl~~llrrl~~~~~~F 111 (465)
T KOG2714|consen 82 --VFPERLLHDEAMFYGLTPLLRRLTLCEELF 111 (465)
T ss_pred --CchhhhhhhhhhhcCcHHHHHHhhcCcccc
Confidence 23334 444899999999887 455543
No 41
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.58 E-value=0.0051 Score=57.36 Aligned_cols=101 Identities=21% Similarity=0.237 Sum_probs=70.9
Q ss_pred HHHHHHHhhcCC---CCCEEEEe-CCceehhhHHHHHhcCHHHHHHhcccccCCCCCcEEeCCCCHHHHHHHHHhhhcCC
Q 015560 175 GQGLKDLLESEI---GCDIVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDK 250 (404)
Q Consensus 175 ~~~l~~l~~~~~---~sDv~l~v-~~~~~~ahk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~ 250 (404)
..++..++.+.- ..|+++.. +|+.|.|||.+|++||.+|..-+..-. ....+|+-..+-+.+|..||+|+|-..
T Consensus 134 aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~v~~~~f~~flk~lyl~~ 211 (516)
T KOG0511|consen 134 AAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHRVILSAFSPFLKQLYLNT 211 (516)
T ss_pred chHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhhhhHhhhhHHHHHHHHhh
Confidence 455566665543 36888876 677888999999999998865543221 123456666788899999999999763
Q ss_pred CCCcccccCCCCcccchHHHHHHHHHhhhcChhhHHHHH
Q 015560 251 FPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLC 289 (404)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~~~~l~~~c 289 (404)
-. +.......|+.+..+|+++.+....
T Consensus 212 na------------~~~~qynallsi~~kF~~e~l~~~~ 238 (516)
T KOG0511|consen 212 NA------------EWKDQYNALLSIEVKFSKEKLSLEI 238 (516)
T ss_pred hh------------hhhhHHHHHHhhhhhccHHHhHHHH
Confidence 22 1234557899999999988776543
No 42
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.56 E-value=0.0079 Score=41.97 Aligned_cols=56 Identities=11% Similarity=0.208 Sum_probs=44.3
Q ss_pred EEEEe-CCceehhhHHHHHhcCHHHHHHhcccccCCCCCcEEeCCCCHHHHHHHHHhhhc
Q 015560 190 IVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYT 248 (404)
Q Consensus 190 v~l~v-~~~~~~ahk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt 248 (404)
|+|.. +|++|.+.+.++. .|..++.|+.+...+.. .|.|++++...++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 45554 7789999998877 99999999975432222 799999999999999999964
No 43
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.0028 Score=69.54 Aligned_cols=167 Identities=14% Similarity=0.099 Sum_probs=110.9
Q ss_pred EEEEEEcCcccccCCCCCCeeecCcceecCeeEEEEEEcCCCCCCCCCceEEEEEEec-CC---CceEEEEEEEEEEeCC
Q 015560 20 SHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALA-SE---GTDVRALFELTLVDQS 95 (404)
Q Consensus 20 ~~~w~I~~fs~~~~~~~~~~~~S~~f~~~g~~W~L~~~p~g~~~~~~~~~lslyL~~~-~~---~w~v~a~~~~~lln~~ 95 (404)
+.+|.+.+...... ...||.|..|+.+|++.+.|+++.. +.+++|+.|. .. .|.+.+++.+.+.| .
T Consensus 28 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~-~ 97 (1093)
T KOG1863|consen 28 STTIDGIDDKSLLY-----RALSSNFGAGATKWKILIAPKVNSL----QSTRKKLEVMPSQSLKSWSCGAQAVLRVKN-T 97 (1093)
T ss_pred cccccCcCcchhhh-----HhcCccccccccceeeeeccccCcc----cceeEEeeeccCCCCcceEecchhhhcccc-C
Confidence 34465555444332 5679999999999999999999722 2699999998 22 28999999999999 3
Q ss_pred CCCccceeeccccccccCCcccccCCCccCceeEEeccccc--cccCcCCCceEEEEEeeeeeccccCCCCcccCCCCCc
Q 015560 96 GKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLE--TSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSD 173 (404)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~l~--~~~~l~dd~l~i~~~v~i~~~~~~~~~~~~~~~~~~~ 173 (404)
.+..... .....+.|......||+..|+.|+++. ..+|+.+|.+.+++.|.+.......
T Consensus 98 ~~~~~~~-------~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~------------ 158 (1093)
T KOG1863|consen 98 IDNLPDP-------EKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSLM------------ 158 (1093)
T ss_pred CCCchhh-------hhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCccc------------
Confidence 3322111 112356777788899999999999996 6789999999999999998721110
Q ss_pred hHHHHHHHhhcCCCCCEEEEeCCceehhhHHHHHhc-CHHHHHHhcc
Q 015560 174 MGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAAR-SPVFRAQFYG 219 (404)
Q Consensus 174 l~~~l~~l~~~~~~sDv~l~v~~~~~~ahk~iLa~~-S~~F~~~f~~ 219 (404)
...+. .......|-+.=.|-+.|+...+-+.- =+.|+..++.
T Consensus 159 ~~~d~----k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~ 201 (1093)
T KOG1863|consen 159 NPYDS----KRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYS 201 (1093)
T ss_pred chhhh----hhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhc
Confidence 00110 112334466666677777776654322 2445555543
No 44
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.042 Score=46.13 Aligned_cols=104 Identities=15% Similarity=0.165 Sum_probs=70.3
Q ss_pred CCceehhhHHHHHhcCHHHHHHhcccccCCCCCcEEeCCCCHHHHHHHHHhhhcCCCCCccccc-----CCCCc------
Q 015560 195 GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEIT-----GTTSM------ 263 (404)
Q Consensus 195 ~~~~~~ahk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~-----~~~~~------ 263 (404)
+|+.|.+...++. .|..+.+++...--......|.|+.|+...|..+|+|++...-....... ...+.
T Consensus 13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 7788999888766 88888888853211111157999999999999999999874332111000 00000
Q ss_pred --ccchHHHHHHHHHhhhcChhhHHHHHHHHHHccCCh
Q 015560 264 --CTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNA 299 (404)
Q Consensus 264 --~~~~~~~~~ll~~Ad~~~~~~l~~~c~~~L~~~i~~ 299 (404)
.+...++.+|+.+|++++++.|..+|.+.+...+..
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikg 129 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKG 129 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHcc
Confidence 223457788888999999999999888877655433
No 45
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=96.42 E-value=0.0047 Score=47.79 Aligned_cols=50 Identities=30% Similarity=0.430 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhcCCCCHHHHhccccchhhHhhChHHHHHHHH
Q 015560 302 VATTLALAEQHQCPQLKAICLKFAATPANLGVIMQSEGFKHLEESCPSLLSELLK 356 (404)
Q Consensus 302 ~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~f~~l~~~~p~l~~ell~ 356 (404)
|+.++.+|..|++..|.+.|.+||. .|+.++..+++|.+|+.+ .+..++.
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~--~nf~~v~~~~~f~~L~~~---~l~~iL~ 50 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIA--KNFNEVSKSDEFLELPFD---QLIEILS 50 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH--HTHHHHTTSHHHHCS-HH---HHHHHHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHH--HHHHHHccchhhhcCCHH---HHHHHHh
Confidence 5789999999999999999999999 999999999999998754 5556655
No 46
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=96.15 E-value=0.012 Score=50.98 Aligned_cols=93 Identities=20% Similarity=0.330 Sum_probs=74.0
Q ss_pred CEEEEeCCceehhhHHHHHhcCH--HHHHHhccc--ccCCCCCcEEeCCCCHHHHHHHHHhhhcCCCCCcccccCCCCcc
Q 015560 189 DIVFEVGDETFKAHKLILAARSP--VFRAQFYGL--VGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMC 264 (404)
Q Consensus 189 Dv~l~v~~~~~~ahk~iLa~~S~--~F~~~f~~~--~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~ 264 (404)
=|.+.++|+.|.....-|..+-| ...+||.+. +.+.+.+-..+-|-++..|+.+|.|+..|.++...
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s--------- 80 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLS--------- 80 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecC---------
Confidence 37788999998887777776654 677888654 33344444667788999999999999999998654
Q ss_pred cchHHHHHHHHHhhhcChhhHHHHHHHH
Q 015560 265 TTTNMVQHLLAAADLYNVDRLKLLCESK 292 (404)
Q Consensus 265 ~~~~~~~~ll~~Ad~~~~~~l~~~c~~~ 292 (404)
..++.++|+.|++|++-.|++..++.
T Consensus 81 --~i~~lgvLeeArff~i~sL~~hle~~ 106 (302)
T KOG1665|consen 81 --DIDCLGVLEEARFFQILSLKDHLEDS 106 (302)
T ss_pred --CccHHHHHHHhhHHhhHhHHhHHhhh
Confidence 35789999999999999999988873
No 47
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.30 E-value=0.011 Score=57.37 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=65.5
Q ss_pred eeeeeEEEEEEcCcccccC---CCCCCeeecCccee--cCeeEEEEEEcCCCCCCCCCceEEEEEEec------CCCceE
Q 015560 15 ETVNGSHQFTVKGYSLAKG---MGPGKCLSSDVFTV--GGYDWAIYFYPDGKNPEDGALYVSVFIALA------SEGTDV 83 (404)
Q Consensus 15 ~~~~~~~~w~I~~fs~~~~---~~~~~~~~S~~f~~--~g~~W~L~~~p~g~~~~~~~~~lslyL~~~------~~~w~v 83 (404)
....|+..|+|.+|...+. ...+..+.|+.|.. .|+....++|-||++.+.+. ++|+|+... .-.|+.
T Consensus 276 ~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~-~~s~~~~~~~ge~d~~l~wpf 354 (391)
T KOG0297|consen 276 RSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGT-HLSLYFVVMRGEYDALLPWPF 354 (391)
T ss_pred hccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcc-eeeeeeeecccCcccccccCC
Confidence 4567999999999954433 24456889999975 59999999999999888887 999999887 346999
Q ss_pred EEEEEEEEEeC
Q 015560 84 RALFELTLVDQ 94 (404)
Q Consensus 84 ~a~~~~~lln~ 94 (404)
.-++++.++++
T Consensus 355 ~~~v~~~l~dq 365 (391)
T KOG0297|consen 355 RQKVTLMLLDQ 365 (391)
T ss_pred CCceEEEEecc
Confidence 99999999999
No 48
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=95.13 E-value=0.017 Score=44.22 Aligned_cols=49 Identities=29% Similarity=0.232 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhcCCCCHHHHhccccchhhHhhChHHHHHHHH
Q 015560 303 ATTLALAEQHQCPQLKAICLKFAATPANLGVIMQSEGFKHLEESCPSLLSELLK 356 (404)
Q Consensus 303 ~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~f~~l~~~~p~l~~ell~ 356 (404)
+.++.+|..|++..|.+.|.+||. .|+..+..+++|..|+.. .+.+++.
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~--~nf~~~~~~~~f~~L~~~---~l~~iL~ 50 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFIL--KNFLEVAQSEEFLELSLE---QLLSLLS 50 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHH--HHHHHHhcCcHHhcCCHH---HHHHHhC
Confidence 567888999999999999999999 999999998888888643 5455443
No 49
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=93.96 E-value=0.033 Score=52.09 Aligned_cols=148 Identities=19% Similarity=0.200 Sum_probs=114.4
Q ss_pred CEEEEeCCceehhhHHHHHhcCHHHHHHhcccccCCCCCcEEeCCCCHHHHHHHHHhhhcCCCCCcccccCCCCcccchH
Q 015560 189 DIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTN 268 (404)
Q Consensus 189 Dv~l~v~~~~~~ahk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~ 268 (404)
|.++...+..+.+|+.+|+..|+.|..+....-..+....+.+..+....+..+.+++|.. +... ....
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~----------e~~~ 96 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKH----------EMVF 96 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhh----------HHHH
Confidence 3344456678999999999999999988765522333445777788889999999999987 3321 1234
Q ss_pred HHHHHHHHhhhcChhhHHHHHHHHHHc-cCChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCCHHHHhccccchhhHhhC
Q 015560 269 MVQHLLAAADLYNVDRLKLLCESKLCE-ELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGVIMQSEGFKHLEESC 347 (404)
Q Consensus 269 ~~~~ll~~Ad~~~~~~l~~~c~~~L~~-~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~f~~l~~~~ 347 (404)
....++.+...|.++..+..|...+.. .++..++...+..+..+....|...+...+. ..+....+++.+..+....
T Consensus 97 ~~ihll~~~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~--~~~~~H~~t~~~~~~~c~~ 174 (319)
T KOG1778|consen 97 FDIHLLALSHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIM--LLFDLHLQTEKWFAYTCPI 174 (319)
T ss_pred HHHHHHhhhhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHH--HHHHHHhcccCceeeecCc
Confidence 567788888899999999999888776 4677799999999999999999999999999 8888888877776655443
Q ss_pred hH
Q 015560 348 PS 349 (404)
Q Consensus 348 p~ 349 (404)
+.
T Consensus 175 c~ 176 (319)
T KOG1778|consen 175 CK 176 (319)
T ss_pred cc
Confidence 33
No 50
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.43 Score=37.77 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=69.4
Q ss_pred CEEEEe-CCceehhhHHHHHhcCHHHHHHhcccccCCCCCcEEeCCCCHHHHHHHHHhhhcC--CCCCccc-ccCCCCc-
Q 015560 189 DIVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTD--KFPDVYE-ITGTTSM- 263 (404)
Q Consensus 189 Dv~l~v-~~~~~~ahk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~--~~~~~~~-~~~~~~~- 263 (404)
-+.|.. +|+.|.+.+. .|.+|-..+.|+... .+. .-.|.++.+...+|+.+++|+-.. ....+.+ +.-..+.
T Consensus 3 ~i~l~s~dge~F~vd~~-iAerSiLikN~l~d~-~~~-n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p 79 (158)
T COG5201 3 MIELESIDGEIFRVDEN-IAERSILIKNMLCDS-TAC-NYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKP 79 (158)
T ss_pred ceEEEecCCcEEEehHH-HHHHHHHHHHHhccc-ccc-CCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCC
Confidence 455554 6677777765 466888888887432 111 123677899999999999998543 2222211 0000011
Q ss_pred ---------ccchHHHHHHHHHhhhcChhhHHHHHHHHHHccCChhh
Q 015560 264 ---------CTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAET 301 (404)
Q Consensus 264 ---------~~~~~~~~~ll~~Ad~~~~~~l~~~c~~~L~~~i~~~n 301 (404)
....+.+.++..+|+++.++.|.+.|...+...+...+
T Consensus 80 ~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkS 126 (158)
T COG5201 80 SDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKS 126 (158)
T ss_pred ccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCC
Confidence 12346677888889999999999998887665444433
No 51
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=92.66 E-value=0.28 Score=40.76 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=72.2
Q ss_pred CCEEEEeCCceehhhHHHHHhcCHHHHHHh-ccccc---CCCCCcEEeCCCCHHHHHHHHHhhhcCCCCCcccccCCCCc
Q 015560 188 CDIVFEVGDETFKAHKLILAARSPVFRAQF-YGLVG---DRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSM 263 (404)
Q Consensus 188 sDv~l~v~~~~~~ahk~iLa~~S~~F~~~f-~~~~~---e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~ 263 (404)
.=|.|.|||..|-.-|.-|..-+.-|-.-| +.... ..+..--.+-|-+|.-|.-+|+|+-+|++....
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~-------- 92 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK-------- 92 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh--------
Confidence 347788999999999999998885554444 43321 112222456678999999999999999987442
Q ss_pred ccchHHHHHHHHHhhhcChhhHHHHHHHHHHcc
Q 015560 264 CTTTNMVQHLLAAADLYNVDRLKLLCESKLCEE 296 (404)
Q Consensus 264 ~~~~~~~~~ll~~Ad~~~~~~l~~~c~~~L~~~ 296 (404)
-.-..+|+-|+.|.++.|.++..+.|.+.
T Consensus 93 ----l~eeGvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 93 ----LSEEGVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred ----hhhhccchhhhccCChHHHHHHHHHHHHH
Confidence 23457899999999999999998888764
No 52
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=89.77 E-value=0.56 Score=34.28 Aligned_cols=48 Identities=17% Similarity=0.305 Sum_probs=32.7
Q ss_pred chHHHHHHHHHhhhcChhhHHHHHHHHHHccCC---hhhHHHHHHHHHhCC
Q 015560 266 TTNMVQHLLAAADLYNVDRLKLLCESKLCEELN---AETVATTLALAEQHQ 313 (404)
Q Consensus 266 ~~~~~~~ll~~Ad~~~~~~l~~~c~~~L~~~i~---~~n~~~~l~~A~~~~ 313 (404)
....+.+|+.+|++++++.|...|...+...+. ++-+..++.+...+.
T Consensus 12 ~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t 62 (78)
T PF01466_consen 12 DNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLT 62 (78)
T ss_dssp -HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSS
T ss_pred CHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCC
Confidence 357899999999999999999999998876544 444555555554443
No 53
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=84.12 E-value=1.8 Score=42.31 Aligned_cols=58 Identities=36% Similarity=0.493 Sum_probs=46.0
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCCHHHHhccccchhhHh-----hChHHHHHHHHHHh
Q 015560 297 LNAETVATTLALAEQHQCPQLKAICLKFAATPANLGVIMQSEGFKHLEE-----SCPSLLSELLKTLA 359 (404)
Q Consensus 297 i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~f~~l~~-----~~p~l~~ell~~~~ 359 (404)
+..+|++.++..|.+|....|...|++||. . .++...+|..|.+ +.|+|+.-+++.+.
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr--~---~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id 247 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLR--K---NLMADNAFLELFQRAKLFDEPSLISICLEVID 247 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHH--H---hcCChHHHHHHHHHHHhhcCHHHHHHHHHHhh
Confidence 578899999999999999999999999999 4 4566667777766 46777666665443
No 54
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=74.31 E-value=5.8 Score=35.11 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=58.6
Q ss_pred CCCCE-EEEeCCceehhhHH-HHHhcCHHHHHHhcccccCC--CCCcEEeCCCCHHHHHHHHHhhhcCCCCCcccccCCC
Q 015560 186 IGCDI-VFEVGDETFKAHKL-ILAARSPVFRAQFYGLVGDR--NLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTT 261 (404)
Q Consensus 186 ~~sDv-~l~v~~~~~~ahk~-iLa~~S~~F~~~f~~~~~e~--~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~ 261 (404)
.+.|+ .|.|||.-|..-.. +++-.-....+||.+...-. ....+.| |-+-..|+.+|.|+-+.....+.
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe------ 78 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPE------ 78 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccch------
Confidence 34454 45567765554333 33333445667776532211 1112333 45778899999999994443322
Q ss_pred CcccchHHHHHHHHHhhhcChhhHHHHHHHH
Q 015560 262 SMCTTTNMVQHLLAAADLYNVDRLKLLCESK 292 (404)
Q Consensus 262 ~~~~~~~~~~~ll~~Ad~~~~~~l~~~c~~~ 292 (404)
...++..|+..|++|+++.+...+.+.
T Consensus 79 ----~f~e~~~L~rEA~f~~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 79 ----DFAEVERLVREAEFFQLEAPVTYLLNS 105 (221)
T ss_pred ----hhhhHHHHHHHHHHHccccHHHHHhcc
Confidence 236788999999999999877765553
No 55
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=65.18 E-value=3.1 Score=38.85 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=38.3
Q ss_pred ccCChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCCHHHHhccc
Q 015560 295 EELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGVIMQSE 338 (404)
Q Consensus 295 ~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~~ 338 (404)
..+++.|++.++.-++...++.|.+.|+.|+. .|+.+++.++
T Consensus 70 p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~--~~~~~Iv~~~ 111 (317)
T PF11822_consen 70 PSLTPSNVVSILISSEFLQMESLVEECLQYCH--DHMSEIVASP 111 (317)
T ss_pred CcCCcCcEEEeEehhhhhccHHHHHHHHHHHH--HhHHHHHcCC
Confidence 35789999999999999999999999999999 9999888765
No 56
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=53.57 E-value=13 Score=34.26 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=56.6
Q ss_pred CCCCEEEEeCCceehhhHHHHHhcC-HHHHHHhccccc---CCCCCcEEeC-CCCHHHHHHHHHhhhcCCCCCcccccCC
Q 015560 186 IGCDIVFEVGDETFKAHKLILAARS-PVFRAQFYGLVG---DRNLDKVVVK-DVEPSIFKAMLLFIYTDKFPDVYEITGT 260 (404)
Q Consensus 186 ~~sDv~l~v~~~~~~ahk~iLa~~S-~~F~~~f~~~~~---e~~~~~i~l~-d~~~~~f~~~L~~iYt~~~~~~~~~~~~ 260 (404)
..--+++.+++..|-+.+.+|.++- ...-.||.+++. .....++++. +++..+|+++|+|--+|.+.-++
T Consensus 94 ~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~----- 168 (438)
T KOG3840|consen 94 EGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPS----- 168 (438)
T ss_pred CCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCC-----
Confidence 4445788889999999988887553 233456655432 2233456654 59999999999998888664322
Q ss_pred CCcccchHHHHHHHHHhhhcCh
Q 015560 261 TSMCTTTNMVQHLLAAADLYNV 282 (404)
Q Consensus 261 ~~~~~~~~~~~~ll~~Ad~~~~ 282 (404)
.-.+.+|-+++|++.+
T Consensus 169 ------~vSvpELrEACDYLli 184 (438)
T KOG3840|consen 169 ------SVSVSELREACDYLLV 184 (438)
T ss_pred ------CCchHHHHhhcceEEe
Confidence 1345666666666654
No 57
>PHA03098 kelch-like protein; Provisional
Probab=51.89 E-value=46 Score=33.90 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=28.7
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHhc
Q 015560 297 LNAETVATTLALAEQHQCPQLKAICLKFAA 326 (404)
Q Consensus 297 i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 326 (404)
++.+|+.+++..|..+.++.|+..|.+|+.
T Consensus 73 i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~ 102 (534)
T PHA03098 73 ITSNNVKDILSIANYLIIDFLINLCINYII 102 (534)
T ss_pred EcHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 678899999999999999999999999998
No 58
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=48.48 E-value=21 Score=27.21 Aligned_cols=28 Identities=43% Similarity=0.630 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHhc
Q 015560 299 AETVATTLALAEQHQCPQLKAICLKFAA 326 (404)
Q Consensus 299 ~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 326 (404)
.+++..++.+|..++++.|...|.+++.
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~ 108 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQ 108 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 7889999999999999999999999987
No 59
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=39.85 E-value=38 Score=25.45 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=38.1
Q ss_pred HHHHHHhhhcChhhHHHHHHHHHHccC------------ChhhHHHHHHHHHh--CCChHHHHHHHHHhcCCCCH
Q 015560 271 QHLLAAADLYNVDRLKLLCESKLCEEL------------NAETVATTLALAEQ--HQCPQLKAICLKFAATPANL 331 (404)
Q Consensus 271 ~~ll~~Ad~~~~~~l~~~c~~~L~~~i------------~~~n~~~~l~~A~~--~~~~~L~~~~~~~i~~~~~~ 331 (404)
.+++.+|+.|++..|...|.+++..+. +.+.+..++.--.. .+-..+.+.+++++. .+.
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~--~~~ 74 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLK--HNP 74 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHH--CTH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHH--hCH
Confidence 478999999999999999999998642 22333333332111 123467788888887 553
No 60
>PHA02713 hypothetical protein; Provisional
Probab=38.14 E-value=42 Score=34.54 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=29.4
Q ss_pred cCChhhHHHHHHHHHhCCChHHHHHHHHHhc
Q 015560 296 ELNAETVATTLALAEQHQCPQLKAICLKFAA 326 (404)
Q Consensus 296 ~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 326 (404)
.++.+|+.++|..|..+.+..|++.|.+|+.
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~ 120 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIK 120 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 3788999999999999999999999999998
No 61
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=36.64 E-value=30 Score=33.42 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=28.7
Q ss_pred cchHHHHHHHHHhhhcChhhHHHHHHHHHHcc
Q 015560 265 TTTNMVQHLLAAADLYNVDRLKLLCESKLCEE 296 (404)
Q Consensus 265 ~~~~~~~~ll~~Ad~~~~~~l~~~c~~~L~~~ 296 (404)
++++++...|.+|.+|+++.++..|.++|..+
T Consensus 170 lspkta~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 170 LSPKTACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred cChhhhhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 44689999999999999999999999998764
No 62
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=29.76 E-value=1.8e+02 Score=22.23 Aligned_cols=55 Identities=15% Similarity=0.306 Sum_probs=38.6
Q ss_pred CEEEEeCC--ceehhhHHHHHhcCHHHHHHhcccccC---CCCCcEEeCCCCHHHHHHHHHhh
Q 015560 189 DIVFEVGD--ETFKAHKLILAARSPVFRAQFYGLVGD---RNLDKVVVKDVEPSIFKAMLLFI 246 (404)
Q Consensus 189 Dv~l~v~~--~~~~ahk~iLa~~S~~F~~~f~~~~~e---~~~~~i~l~d~~~~~f~~~L~~i 246 (404)
-+.+.||+ +.|-++...| ..|.|+++|...-.| .....|.|+ .+...|+.+|..|
T Consensus 40 ~~~VyVG~~~~Rfvvp~~~L--~hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 40 HFAVYVGEERRRFVVPVSYL--NHPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred eEEEEeCccceEEEechHHc--CchhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 46777765 6788888888 468999999643222 224457776 7888898888765
No 63
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=28.74 E-value=59 Score=24.04 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=21.7
Q ss_pred HHHHHhhhcChhhHHHHHHHHHHcc
Q 015560 272 HLLAAADLYNVDRLKLLCESKLCEE 296 (404)
Q Consensus 272 ~ll~~Ad~~~~~~l~~~c~~~L~~~ 296 (404)
+++.+|+.|+.+.|...|..++..+
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHH
Confidence 5778899999999999999998764
No 64
>PHA02790 Kelch-like protein; Provisional
Probab=28.67 E-value=99 Score=31.12 Aligned_cols=31 Identities=6% Similarity=0.030 Sum_probs=28.1
Q ss_pred chHHHHHHHHHhhhcChhhHHHHHHHHHHcc
Q 015560 266 TTNMVQHLLAAADLYNVDRLKLLCESKLCEE 296 (404)
Q Consensus 266 ~~~~~~~ll~~Ad~~~~~~l~~~c~~~L~~~ 296 (404)
+.+|..+++.+|+.|.++.|.+.+.+++.++
T Consensus 121 ~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~n 151 (480)
T PHA02790 121 RKEYCVECYMMGIEYGLSNLLCHTKDFIAKH 151 (480)
T ss_pred CcchHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 3579999999999999999999999998775
No 65
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=24.35 E-value=1.1e+02 Score=31.60 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=29.3
Q ss_pred cCChhhHHHHHHHHHhCCChHHHHHHHHHhc
Q 015560 296 ELNAETVATTLALAEQHQCPQLKAICLKFAA 326 (404)
Q Consensus 296 ~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 326 (404)
.|+.+|+.+++..|..+++..+.+.|.+|+.
T Consensus 101 ~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~ 131 (571)
T KOG4441|consen 101 EISEDNVQELLEAASLLQIPEVVDACCEFLE 131 (571)
T ss_pred EechHhHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3688899999999999999999999999999
No 66
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=21.15 E-value=2.1e+02 Score=20.52 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=26.3
Q ss_pred cCChhhHHHHHHHHHhCCChHHHHHHHHHhc
Q 015560 296 ELNAETVATTLALAEQHQCPQLKAICLKFAA 326 (404)
Q Consensus 296 ~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 326 (404)
.++.+....++..|...+...|.+.|.++++
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA 40 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIA 40 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 4678889999999999999999999999998
Done!