Query 015562
Match_columns 404
No_of_seqs 269 out of 1202
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:28:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 1E-112 3E-117 855.6 36.0 404 1-404 1-408 (408)
2 KOG2288 Galactosyltransferases 100.0 6.8E-75 1.5E-79 546.2 18.6 265 132-404 8-273 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 3.4E-50 7.3E-55 425.0 25.6 243 131-399 381-631 (636)
4 KOG2287 Galactosyltransferases 100.0 1.9E-48 4.1E-53 391.7 17.9 240 134-394 94-339 (349)
5 PF01762 Galactosyl_T: Galacto 100.0 5.7E-47 1.2E-51 350.7 17.1 191 149-347 1-195 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 1.9E-32 4.2E-37 272.8 19.1 193 129-340 74-307 (382)
7 PF13334 DUF4094: Domain of un 100.0 1.6E-28 3.4E-33 203.4 7.8 93 16-109 1-94 (95)
8 PF02434 Fringe: Fringe-like; 99.8 1.6E-18 3.4E-23 167.6 11.1 193 135-354 6-210 (252)
9 KOG2246 Galactosyltransferases 99.6 3.6E-15 7.8E-20 151.0 12.7 170 131-347 87-269 (364)
10 PLN03153 hypothetical protein; 99.1 1.4E-09 3E-14 113.4 13.3 184 134-353 121-319 (537)
11 KOG3708 Uncharacterized conser 97.2 0.0016 3.6E-08 68.1 9.7 198 136-393 27-244 (681)
12 PF01755 Glyco_transf_25: Glyc 95.8 0.21 4.6E-06 45.8 13.0 93 139-248 4-101 (200)
13 PF13641 Glyco_tranf_2_3: Glyc 95.2 0.47 1E-05 43.6 13.0 114 223-342 77-198 (228)
14 TIGR03472 HpnI hopanoid biosyn 95.0 0.71 1.5E-05 47.0 14.9 158 173-342 70-241 (373)
15 cd04192 GT_2_like_e Subfamily 94.1 1.3 2.8E-05 40.3 13.1 166 174-347 29-204 (229)
16 cd02520 Glucosylceramide_synth 93.7 4.5 9.8E-05 36.6 15.7 134 173-342 30-165 (196)
17 cd02525 Succinoglycan_BP_ExoA 93.6 3.8 8.3E-05 37.7 15.5 160 172-343 30-197 (249)
18 cd02510 pp-GalNAc-T pp-GalNAc- 93.2 3.5 7.6E-05 40.2 15.2 125 223-347 74-220 (299)
19 TIGR03469 HonB hopene-associat 92.7 3.1 6.8E-05 42.5 14.6 159 173-340 70-248 (384)
20 PF13506 Glyco_transf_21: Glyc 92.2 0.44 9.4E-06 43.6 6.8 119 217-344 16-144 (175)
21 PRK11204 N-glycosyltransferase 92.1 7.4 0.00016 39.8 16.5 190 135-347 54-255 (420)
22 cd04196 GT_2_like_d Subfamily 91.9 7.3 0.00016 34.9 14.5 178 151-346 10-197 (214)
23 cd06421 CESA_CelA_like CESA_Ce 91.0 6.5 0.00014 35.9 13.4 120 224-349 76-208 (234)
24 PF00535 Glycos_transf_2: Glyc 91.0 2.9 6.3E-05 35.3 10.3 136 172-315 26-168 (169)
25 cd06423 CESA_like CESA_like is 89.4 6.1 0.00013 33.2 11.0 95 222-316 68-170 (180)
26 cd06532 Glyco_transf_25 Glycos 88.8 6.2 0.00013 34.0 10.6 117 139-321 2-119 (128)
27 cd04186 GT_2_like_c Subfamily 88.3 15 0.00032 31.1 14.2 87 226-344 68-157 (166)
28 cd04195 GT2_AmsE_like GT2_AmsE 88.3 11 0.00024 33.6 12.4 114 223-347 71-196 (201)
29 cd06439 CESA_like_1 CESA_like_ 88.2 15 0.00032 34.2 13.7 120 223-348 100-225 (251)
30 cd04187 DPM1_like_bac Bacteria 87.9 4.6 0.0001 35.7 9.5 136 172-318 28-165 (181)
31 cd06433 GT_2_WfgS_like WfgS an 87.7 18 0.00039 31.6 14.9 114 222-342 65-182 (202)
32 cd04184 GT2_RfbC_Mx_like Myxoc 86.1 24 0.00052 31.3 16.0 111 223-342 74-189 (202)
33 PRK14583 hmsR N-glycosyltransf 86.0 39 0.00084 35.3 16.6 190 135-346 75-275 (444)
34 cd06434 GT2_HAS Hyaluronan syn 85.2 5.1 0.00011 36.8 8.6 157 173-342 28-201 (235)
35 PF13632 Glyco_trans_2_3: Glyc 84.4 3.1 6.8E-05 37.3 6.7 116 235-354 1-126 (193)
36 cd04185 GT_2_like_b Subfamily 84.4 30 0.00065 30.9 13.4 101 221-351 69-172 (202)
37 PF04646 DUF604: Protein of un 83.4 1.8 3.9E-05 42.3 4.8 53 301-353 12-68 (255)
38 cd06435 CESA_NdvC_like NdvC_li 81.4 28 0.00061 32.0 12.0 118 223-346 73-203 (236)
39 cd02526 GT2_RfbF_like RfbF is 81.2 32 0.00068 31.5 12.3 127 222-350 66-202 (237)
40 cd06420 GT2_Chondriotin_Pol_N 80.9 9.8 0.00021 33.3 8.4 97 223-340 70-166 (182)
41 PF10111 Glyco_tranf_2_2: Glyc 79.7 62 0.0013 31.4 14.9 165 171-343 32-211 (281)
42 cd04179 DPM_DPG-synthase_like 79.2 13 0.00029 32.5 8.7 136 173-316 28-167 (185)
43 COG1215 Glycosyltransferases, 75.4 49 0.0011 33.6 12.7 164 174-347 85-260 (439)
44 PRK10714 undecaprenyl phosphat 74.4 60 0.0013 32.5 12.8 135 172-317 37-174 (325)
45 cd02514 GT13_GLCNAC-TI GT13_GL 74.2 14 0.0003 37.6 8.2 82 222-315 87-174 (334)
46 cd04191 Glucan_BSP_ModH Glucan 74.0 64 0.0014 31.2 12.5 123 215-345 77-224 (254)
47 COG1216 Predicted glycosyltran 73.6 23 0.00051 34.8 9.5 136 201-340 55-206 (305)
48 cd02522 GT_2_like_a GT_2_like_ 69.0 39 0.00084 30.5 9.3 107 224-342 64-175 (221)
49 cd06437 CESA_CaSu_A2 Cellulose 68.9 95 0.0021 28.5 14.3 120 223-348 78-209 (232)
50 TIGR03030 CelA cellulose synth 61.6 97 0.0021 34.7 12.3 136 215-354 212-360 (713)
51 cd06442 DPM1_like DPM1_like re 61.2 1.2E+02 0.0027 27.1 13.6 91 224-316 70-167 (224)
52 PF03071 GNT-I: GNT-I family; 59.6 1.3E+02 0.0028 31.9 12.0 86 221-318 176-272 (434)
53 cd04190 Chitin_synth_C C-termi 57.2 17 0.00037 34.3 4.8 114 230-343 71-211 (244)
54 TIGR01556 rhamnosyltran L-rham 54.9 50 0.0011 31.6 7.6 36 222-258 64-99 (281)
55 TIGR03111 glyc2_xrt_Gpos1 puta 54.2 2.7E+02 0.006 28.9 13.5 126 223-351 122-266 (439)
56 cd04188 DPG_synthase DPG_synth 51.2 1.5E+02 0.0033 26.7 9.9 89 172-268 29-119 (211)
57 PHA01631 hypothetical protein 50.5 39 0.00085 31.2 5.6 64 231-318 70-133 (176)
58 cd00761 Glyco_tranf_GTA_type G 47.9 1.4E+02 0.0031 23.8 13.6 82 223-339 68-150 (156)
59 PLN02726 dolichyl-phosphate be 45.3 2.6E+02 0.0056 26.0 18.2 155 173-344 40-210 (243)
60 PRK05454 glucosyltransferase M 45.0 4.6E+02 0.01 29.5 14.0 197 132-346 121-350 (691)
61 cd06427 CESA_like_2 CESA_like_ 43.0 2.7E+02 0.0059 25.7 12.7 121 223-346 75-206 (241)
62 PF04508 Pox_A_type_inc: Viral 42.9 31 0.00067 21.5 2.6 19 90-108 3-21 (23)
63 cd06913 beta3GnTL1_like Beta 1 42.4 2.6E+02 0.0056 25.3 10.9 45 223-267 75-119 (219)
64 COG4092 Predicted glycosyltran 41.0 1.1E+02 0.0023 30.7 7.3 81 170-255 35-117 (346)
65 PF03452 Anp1: Anp1; InterPro 40.1 3.9E+02 0.0083 26.6 11.3 100 154-258 40-168 (269)
66 PRK14716 bacteriophage N4 adso 39.0 5.3E+02 0.011 27.8 14.7 111 232-346 158-283 (504)
67 cd06438 EpsO_like EpsO protein 36.4 3E+02 0.0064 24.2 9.9 89 222-314 70-169 (183)
68 KOG2547 Ceramide glucosyltrans 30.4 65 0.0014 33.6 4.1 27 232-258 170-196 (431)
69 PRK10018 putative glycosyl tra 27.6 5.9E+02 0.013 24.9 12.2 35 223-257 76-110 (279)
70 PF04666 Glyco_transf_54: N-Ac 26.1 4E+02 0.0086 26.7 8.9 23 232-254 169-191 (297)
71 PF06306 CgtA: Beta-1,4-N-acet 24.0 4.5E+02 0.0098 27.0 8.7 66 191-256 128-199 (347)
72 PF03742 PetN: PetN ; InterPr 23.9 83 0.0018 20.7 2.3 23 15-37 4-26 (29)
73 PF09258 Glyco_transf_64: Glyc 23.1 80 0.0017 30.6 3.2 102 230-337 73-180 (247)
74 PF06072 Herpes_US9: Alphaherp 22.9 79 0.0017 24.2 2.4 17 20-36 42-58 (60)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.4e-112 Score=855.57 Aligned_cols=404 Identities=90% Similarity=1.439 Sum_probs=376.8
Q ss_pred CCccccc-ccCCCCccchHHHHHHHHHHHHhHHHhcccCCCCccCccccchhhhhHhhhhhccCCCCCcc---ccccCCc
Q 015562 1 MSLKSKG-ELTSRSVVSQKWTFLLCLGCFCAGMLFTNRMWAVPESKGFTRTTAMEAEKLKLVSEGCNPRL---KVVRHDS 76 (404)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 76 (404)
||.|+|| ++.+|+.||+||+++||++|||+|++||+|||..||..+..++++.++++++++++||++++ |..++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 80 (408)
T PLN03193 1 MSTKSRGEEYSSRSVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKGISRTTVTEAERLKLVSEGCDPKTLYQKEVKRDS 80 (408)
T ss_pred CCcccccccccccccccHHHHHHHHHHHHHHHHhhccccccCCccccccccccchhhhhhhhccccccccccccccccch
Confidence 8999999 77899999999999999999999999999999999999988878888999999999999876 4446789
Q ss_pred chhhhhhHhhHHHHHhhhhhHHHHHHHHHHHHhhhhcccCCCCCcccccccCCCCCCCeeEEEEEECCCCCHHHHHHHHH
Q 015562 77 KDIFGEVFKTHNAIQTLDKTISNLEMELAAARAAQESILSGSPLSEDLKKTESSGKRRYLMVVGINTAFSSRKRRDSVRA 156 (404)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvI~V~S~~~~~~rR~aIRe 156 (404)
++||++|++||+|||+|+|+|+.||||||+|++.|..+.++.|.++.....+...+++++|||+|+|+|+|++||++||+
T Consensus 81 ~~~~~~~~~t~~~~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~ 160 (408)
T PLN03193 81 KDIIGEVSKTHNAIQTLDKTISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRA 160 (408)
T ss_pred hHHHHHHhhHHHHHHHHhhhhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999977766776666533333344567789999999999999999999999
Q ss_pred HHHhhhhhhhhccccCcEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCcccccchhHHHHHHHHHHHhcCCcceE
Q 015562 157 TWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFY 236 (404)
Q Consensus 157 TW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~ 236 (404)
|||+.++.+.+++.+.+++++||||++.++++.++++|++|+++|+|||++||+|+|.|||+||+++|+||.++|+++||
T Consensus 161 TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~ 240 (408)
T PLN03193 161 TWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFY 240 (408)
T ss_pred HHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEE
Confidence 99998877777777899999999999987677899999999999999999999999999999999999999999999999
Q ss_pred EEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccCCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHH
Q 015562 237 VKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYIS 316 (404)
Q Consensus 237 lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~f~d~~~~Yp~y~~G~gYvLS~dla~~I~ 316 (404)
||+|||+|||+++|+.+|..++.++++|+|||+++|++.+++.|||+|++|+||++++.|||||+|+|||||+|+|++|+
T Consensus 241 mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~ 320 (408)
T PLN03193 241 VKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYIS 320 (408)
T ss_pred EEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHH
Confidence 99999999999999999998877789999999999887778889999999999988999999999999999999999999
Q ss_pred HhccccCCCCcchHHHHHHHhcCCCeeecCCCcccCCCCCcccccccCCccccccccccccccCcHHHHHHHHHHccCCc
Q 015562 317 INQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWTCSGICRSADRIKEVHRRCGEGE 396 (404)
Q Consensus 317 ~~~~~l~~~~~EDV~vG~~l~~L~v~~id~~~f~~~~~~~cewk~~~~~~c~~~~~~~~sgic~~~~~m~~vH~~~~~~~ 396 (404)
.+...++.|++||||+|+||++|+|+|+|+++|||+++|+|+||+++|++|+++|||+|||||+|++||+++|++|+|++
T Consensus 321 ~n~~~L~~y~~EDV~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~~~~~~csg~c~~~~~~~~~h~~c~~~~ 400 (408)
T PLN03193 321 INQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGEGE 400 (408)
T ss_pred hChhhhcccCcchhhhhhHhccCCceeeecccccCCCCccccccccCCCeeEEEecccCcccCCHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccC
Q 015562 397 NALWSATF 404 (404)
Q Consensus 397 ~~~w~~~~ 404 (404)
+|+|+++|
T Consensus 401 ~~~~~~~~ 408 (408)
T PLN03193 401 NALWSATF 408 (408)
T ss_pred ccceeecC
Confidence 99999987
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.8e-75 Score=546.20 Aligned_cols=265 Identities=68% Similarity=1.150 Sum_probs=256.9
Q ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhccccCcEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecC-Cc
Q 015562 132 KRRYLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLD-HV 210 (404)
Q Consensus 132 ~~~~~lvI~V~S~~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld-~~ 210 (404)
++++++||||.|+|++.+||+++|+||++.++.+++++.+++|.++||||+ .+.++.++++|++|+++|+|+|+|| ++
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~-~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGT-ATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEecc-CCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 778999999999999999999999999999999999999999999999999 4458899999999999999999999 99
Q ss_pred ccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccCCCccccCcccccC
Q 015562 211 EGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFG 290 (404)
Q Consensus 211 DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~f~ 290 (404)
|+|.+|+.||+++|.+|.++|+++||+|+|||+|||++.|...|+.++.+|++|||||++|||+.++++|||||+ |+||
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCeeecCCCcccCCCCCcccccccCCccccc
Q 015562 291 EAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVAS 370 (404)
Q Consensus 291 d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~~id~~~f~~~~~~~cewk~~~~~~c~~~ 370 (404)
+.++ |+||+.|++|+||+|||.+|+.|+..++.|.+|||++|.||+||+|+|+||+++||+++ |++++++|.++
T Consensus 166 ~~g~-YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~-----~~~~~~~~~~~ 239 (274)
T KOG2288|consen 166 DNGN-YFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTP-----KALAGMVCAAS 239 (274)
T ss_pred cccc-cchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccch-----hhhccceeeee
Confidence 9777 99999999999999999999999999999999999999999999999999999999874 78899999999
Q ss_pred cccccccccCcHHHHHHHHHHccCCccccccccC
Q 015562 371 FDWTCSGICRSADRIKEVHRRCGEGENALWSATF 404 (404)
Q Consensus 371 ~~~~~sgic~~~~~m~~vH~~~~~~~~~~w~~~~ 404 (404)
++|+|+|||+++.||.++|.+|+++..++|.+.|
T Consensus 240 ~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~~~ 273 (274)
T KOG2288|consen 240 FDWKCSGLCKSEDRMLEVHKYDWEGKPATCCSRF 273 (274)
T ss_pred ecccccccCchHHHHhHHHHhhccCCCcccCccc
Confidence 9999999999999999999999999999998865
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=3.4e-50 Score=424.99 Aligned_cols=243 Identities=23% Similarity=0.347 Sum_probs=208.6
Q ss_pred CCCCeeEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhccccCcEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCc
Q 015562 131 GKRRYLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHV 210 (404)
Q Consensus 131 ~~~~~~lvI~V~S~~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~ 210 (404)
++++++|||+|+|+|+|++||+|||+|||+... ..+.+++++|++|.+. ++.++.+|.+|+++|+||||+||.
T Consensus 381 ~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~--n~~l~~~L~~Ea~~ygDIIq~dF~ 453 (636)
T PLN03133 381 PKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHK--NQMVNEELWNEARTYGDIQLMPFV 453 (636)
T ss_pred CCCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCC--cHHHHHHHHHHHHHcCCeEEEeee
Confidence 356799999999999999999999999998631 2345699999999986 467899999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEecc-CcccccCCCccccCccccc
Q 015562 211 EGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKS-GPVLNQKGVRYHEPEYWKF 289 (404)
Q Consensus 211 DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~-gpv~r~~~~Kwy~pe~~~f 289 (404)
|+|+|||+||++++.|+..|++++|+||+|||+|||+++|+++|......+++|+|++.. ..|+|++.+|||+|.+.|
T Consensus 454 DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~ey- 532 (636)
T PLN03133 454 DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEW- 532 (636)
T ss_pred chhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHC-
Confidence 999999999999999999999999999999999999999999998776667899999874 578899999999997666
Q ss_pred CCCCCCCCCCCCCCceeeCHHHHHHHHHhc--cccCCCCcchHHHHHHHh-----cCCCeeecCCCcccCCCCCcccccc
Q 015562 290 GEAGNRYFRHATGQLYAISKDLAAYISINQ--HVLHKYANEDVSLGSWFI-----GLDVEHIDDRRLCCGTPPDCEWKAQ 362 (404)
Q Consensus 290 ~d~~~~Yp~y~~G~gYvLS~dla~~I~~~~--~~l~~~~~EDV~vG~~l~-----~L~v~~id~~~f~~~~~~~cewk~~ 362 (404)
|.+.|||||+|+|||||+|+|++|+.++ ..++.|++||||+|+|+. ++.+++.++.+||+.. |.
T Consensus 533 --p~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~~---C~---- 603 (636)
T PLN03133 533 --PEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNEG---CK---- 603 (636)
T ss_pred --CCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCCc---CC----
Confidence 6789999999999999999999998864 578999999999999985 6778889999997532 43
Q ss_pred cCCccccccccccccccCcHHHHHHHHHHccCCcccc
Q 015562 363 AGNICVASFDWTCSGICRSADRIKEVHRRCGEGENAL 399 (404)
Q Consensus 363 ~~~~c~~~~~~~~sgic~~~~~m~~vH~~~~~~~~~~ 399 (404)
.+.++++ -.+|+.|..+|+...+...+.
T Consensus 604 ~~~i~~H---------~~sP~eM~~lW~~l~~~~~~~ 631 (636)
T PLN03133 604 DGYVVAH---------YQSPREMLCLWQKLQEGKRAT 631 (636)
T ss_pred CCeEEEe---------cCCHHHHHHHHHHHhccCCCC
Confidence 1122221 246899999999987776544
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-48 Score=391.74 Aligned_cols=240 Identities=22% Similarity=0.308 Sum_probs=208.2
Q ss_pred CeeEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhccccCcEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCcccc
Q 015562 134 RYLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGY 213 (404)
Q Consensus 134 ~~~lvI~V~S~~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~DsY 213 (404)
.++++|+|.|++++++||++||+|||+... ..+..++++|++|.+++.+ .++..|.+|++.|||||+.||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccch
Confidence 489999999999999999999999999853 3567899999999998644 6689999999999999999999999
Q ss_pred cchhHHHHHHHHHHHh-cCCcceEEEeCCceEecHHHHHHHHHhc-CCCCCeEEEEec-cCcccccCCCccccCcccccC
Q 015562 214 LELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRH-RSKPRVYIGCMK-SGPVLNQKGVRYHEPEYWKFG 290 (404)
Q Consensus 214 ~nLt~Ktl~~~~wa~~-~~~a~f~lKvDDDvfVn~~~L~~~L~~~-~~~~~lYiG~~~-~gpv~r~~~~Kwy~pe~~~f~ 290 (404)
.|||+||++++.|+.. |++++|++|+|||+|||+++|+.+|..+ .+.+.+|.|.+. ..+|+|++.+|||+|+..|
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y-- 245 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESEY-- 245 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHHC--
Confidence 9999999999999997 9999999999999999999999999999 788899999976 4689999999999998777
Q ss_pred CCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcC-CCeeecCCCcccCC--CCCcccccccCCcc
Q 015562 291 EAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGL-DVEHIDDRRLCCGT--PPDCEWKAQAGNIC 367 (404)
Q Consensus 291 d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L-~v~~id~~~f~~~~--~~~cewk~~~~~~c 367 (404)
+...||+||+|+|||||+++|+.|+.++..++.+++|||++|+|++.. ++++++...|.... ...|.|+. .-
T Consensus 246 -~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~~~~~~~~~~~----~~ 320 (349)
T KOG2287|consen 246 -PCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIPLSFDPCCYRD----LL 320 (349)
T ss_pred -CCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcccccccccCCCCcccc----eE
Confidence 678999999999999999999999999999999999999999999877 99999888755432 13444431 11
Q ss_pred ccccccccccccCcHHHHHHHHHHccC
Q 015562 368 VASFDWTCSGICRSADRIKEVHRRCGE 394 (404)
Q Consensus 368 ~~~~~~~~sgic~~~~~m~~vH~~~~~ 394 (404)
+ .. - .+++.|..+++.+..
T Consensus 321 ~------~H-~-~~p~e~~~~w~~~~~ 339 (349)
T KOG2287|consen 321 A------VH-R-LSPNEMIYLWKKLKD 339 (349)
T ss_pred E------Ee-c-CCHHHHHHHHHHhhc
Confidence 1 11 1 227888888888765
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=5.7e-47 Score=350.74 Aligned_cols=191 Identities=29% Similarity=0.383 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHhhhhhhhhccccCcEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCcccccchhHHHHHHHHHHH
Q 015562 149 KRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAV 228 (404)
Q Consensus 149 ~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~DsY~nLt~Ktl~~~~wa~ 228 (404)
+||++||+||++... ....+++++||+|.+++.+..++..|.+|+++|+|||++||.|+|.|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 589999999999853 235899999999999866678889999999999999999999999999999999999999
Q ss_pred h-cCCcceEEEeCCceEecHHHHHHHHHhc--CC-CCCeEEEEeccCcccccCCCccccCcccccCCCCCCCCCCCCCCc
Q 015562 229 S-LWDADFYVKVDDDVHVNIATLGQTLVRH--RS-KPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQL 304 (404)
Q Consensus 229 ~-~~~a~f~lKvDDDvfVn~~~L~~~L~~~--~~-~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~f~d~~~~Yp~y~~G~g 304 (404)
+ |++++|++|+|||+|||+++|.+.|... .. ...+|.+++..++|+|++.+|||+|+..| +.+.|||||+|++
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y---~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEY---PDDYYPPYCSGGG 152 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeec---ccccCCCcCCCCe
Confidence 8 6679999999999999999999999987 23 33455556677889999999999998777 6789999999999
Q ss_pred eeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCeeecCC
Q 015562 305 YAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVEHIDDR 347 (404)
Q Consensus 305 YvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~~id~~ 347 (404)
|+||+++|+.|+.++..++.+++|||++|+|+.+++|+++|++
T Consensus 153 yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 153 YVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999999999999999999999999875
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=1.9e-32 Score=272.76 Aligned_cols=193 Identities=19% Similarity=0.267 Sum_probs=161.1
Q ss_pred CCCCCCeeEEEEEECCCCC--HHHHHHHHHHHHhhhhhh-hhccccCcEEEEEEeeccCCCCChhHHHHHHHHhhcCCee
Q 015562 129 SSGKRRYLMVVGINTAFSS--RKRRDSVRATWMLQGEKR-KRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFM 205 (404)
Q Consensus 129 ~~~~~~~~lvI~V~S~~~~--~~rR~aIReTW~~~~~~l-~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL 205 (404)
....+..++++||.|..++ +.||++.|+||.+..... +...-...+.++|++|.+++.+-+++.+|.+|+++|+|||
T Consensus 74 ~w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIV 153 (382)
T PTZ00210 74 VWKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDII 153 (382)
T ss_pred HhccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEE
Confidence 3557789999999999988 899999999999987532 2232245678899999999877799999999999999999
Q ss_pred ecCC------------------cccccchhHHHHHHHHHHHh-cCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEE
Q 015562 206 RLDH------------------VEGYLELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIG 266 (404)
Q Consensus 206 ~ld~------------------~DsY~nLt~Ktl~~~~wa~~-~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG 266 (404)
++|| .|+|.++|+||+++|+||.+ |++++|++|+|||+|||++++++.|... ++..+|+|
T Consensus 154 ilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G 232 (382)
T PTZ00210 154 TLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMG 232 (382)
T ss_pred EEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEE
Confidence 9999 77788899999999999998 7799999999999999999999999665 55679999
Q ss_pred EeccC-cccccCCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccc--c---------------CCCCcc
Q 015562 267 CMKSG-PVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHV--L---------------HKYANE 328 (404)
Q Consensus 267 ~~~~g-pv~r~~~~Kwy~pe~~~f~d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~--l---------------~~~~~E 328 (404)
.+... .+. .+.+||||+|+||+||+|+|+.|+...+. + -.+.+|
T Consensus 233 ~v~~~~~p~------------------Rd~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~E 294 (382)
T PTZ00210 233 RYNYYNRIW------------------RRNQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYE 294 (382)
T ss_pred eeCCCCccc------------------cCCCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCch
Confidence 87531 111 12479999999999999999999987542 2 235799
Q ss_pred hHHHHHHH-hcCC
Q 015562 329 DVSLGSWF-IGLD 340 (404)
Q Consensus 329 DV~vG~~l-~~L~ 340 (404)
|+.+|.|+ .++.
T Consensus 295 DiMvG~vLr~~~k 307 (382)
T PTZ00210 295 DVMVGMILREKVV 307 (382)
T ss_pred HHHHHHHHHHhcC
Confidence 99999999 4554
No 7
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.95 E-value=1.6e-28 Score=203.35 Aligned_cols=93 Identities=65% Similarity=1.067 Sum_probs=84.0
Q ss_pred chHHHHHHHHHHHHhHHHhcccCCCCccCccccchh-hhhHhhhhhccCCCCCccccccCCcchhhhhhHhhHHHHHhhh
Q 015562 16 SQKWTFLLCLGCFCAGMLFTNRMWAVPESKGFTRTT-AMEAEKLKLVSEGCNPRLKVVRHDSKDIFGEVFKTHNAIQTLD 94 (404)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (404)
|+||+++||++|||+|+|||||||..||+.+....+ +.+++++++++++|++++ .++.+++++|++|++||+|||+||
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~-~~~~~~~di~~eV~kTh~aIq~Ld 79 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKEISRRSSQDAEERLQLVSEDCDPKK-LKESDQRDIMGEVSKTHEAIQSLD 79 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCccccchhhhccccccccccccccccccc-cccCCccchhHHHHHHHHHHHHHH
Confidence 679999999999999999999999999988877543 367889999988999875 445789999999999999999999
Q ss_pred hhHHHHHHHHHHHHh
Q 015562 95 KTISNLEMELAAARA 109 (404)
Q Consensus 95 ~~i~~le~~l~~~~~ 109 (404)
|+||+||||||+||+
T Consensus 80 KtIS~LEMELAaARa 94 (95)
T PF13334_consen 80 KTISSLEMELAAARA 94 (95)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999996
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.77 E-value=1.6e-18 Score=167.65 Aligned_cols=193 Identities=17% Similarity=0.210 Sum_probs=99.8
Q ss_pred eeEEEEEECCCCCH-HHHHHHHHHHHhhhhhhhhccccCcEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCcccc
Q 015562 135 YLMVVGINTAFSSR-KRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGY 213 (404)
Q Consensus 135 ~~lvI~V~S~~~~~-~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~DsY 213 (404)
-.|+|+|+|++++. .|-.+|++||++.+.. + .|+.... .+..|..+ ...+++.-+...++
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~---------~--~~ifsd~------~d~~l~~~--~~~~l~~~~~~~~~ 66 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCNK---------Q--TFIFSDA------EDPSLPTV--TGVHLVNPNCDAGH 66 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSGG---------G--EEEEESS--------HHHHHH--HGGGEEE-------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcCC---------c--eEEecCc------cccccccc--cccccccCCCcchh
Confidence 36899999999765 5669999999998631 1 3432211 12333333 22345555555544
Q ss_pred cchhHHHHHHHHHHHh-cCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccC-CCccccCcccccCC
Q 015562 214 LELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQK-GVRYHEPEYWKFGE 291 (404)
Q Consensus 214 ~nLt~Ktl~~~~wa~~-~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~-~~Kwy~pe~~~f~d 291 (404)
...+++.++.+.+... ..+++|++++|||+||++++|.++|...++..++|+|+.....+.... ......+
T Consensus 67 ~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~------- 139 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKS------- 139 (252)
T ss_dssp ------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----------------------
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeecccccccc-------
Confidence 4334444444343222 358899999999999999999999999999999999986422111110 0000000
Q ss_pred CCCCCCCCC-CCCceeeCHHHHHHHHHhc---cccCCC----CcchHHHHHHHhc-CCCeeecCCCcccCCC
Q 015562 292 AGNRYFRHA-TGQLYAISKDLAAYISINQ---HVLHKY----ANEDVSLGSWFIG-LDVEHIDDRRLCCGTP 354 (404)
Q Consensus 292 ~~~~Yp~y~-~G~gYvLS~dla~~I~~~~---~~l~~~----~~EDV~vG~~l~~-L~v~~id~~~f~~~~~ 354 (404)
...-..|+ +|+||+||+.+++.|.... ...... ..||+.+|.|+.. |||+.+|.+.|+...+
T Consensus 140 -~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~ 210 (252)
T PF02434_consen 140 -KDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLE 210 (252)
T ss_dssp -------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS
T ss_pred -CcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCc
Confidence 11222455 6799999999999995422 222222 3799999999988 9999999999988654
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.61 E-value=3.6e-15 Score=151.04 Aligned_cols=170 Identities=23% Similarity=0.309 Sum_probs=130.8
Q ss_pred CCCCeeEEEEEECCCCCHHH-HHHHHHHHHhhhhhhhhccccCcEEEEEEe---eccCCCCChhHHHHHHHHhhcCCeee
Q 015562 131 GKRRYLMVVGINTAFSSRKR-RDSVRATWMLQGEKRKRLEEEKGIIMRFVI---GHSATSGGILDRAIEAEDRKHGDFMR 206 (404)
Q Consensus 131 ~~~~~~lvI~V~S~~~~~~r-R~aIReTW~~~~~~l~~l~~~~~v~v~Fvi---G~s~~~~~~~~~~L~~E~~~~~DiL~ 206 (404)
..++..+++.|.|.+.+... -+++-+||++.++. ..|+. .... ..+. .|.
T Consensus 87 l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~~s~~~--------------~~f~-~v~ 140 (364)
T KOG2246|consen 87 LSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPTLSKDD--------------SRFP-TVY 140 (364)
T ss_pred cCCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCccCCCCC--------------CcCc-eee
Confidence 46678999999999877654 47999999998742 23443 2221 1122 236
Q ss_pred cCCcccccchhHHHHHHHHHHHh--cCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccCCCccccC
Q 015562 207 LDHVEGYLELSAKTKIYFATAVS--LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEP 284 (404)
Q Consensus 207 ld~~DsY~nLt~Ktl~~~~wa~~--~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~p 284 (404)
.+..|+|+++..||..+|+++.. ..+++|++|+|||||+.+++|..+|..+++.+.+|+|+... -|.
T Consensus 141 ~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~----------~~~- 209 (364)
T KOG2246|consen 141 YNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSK----------SYF- 209 (364)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccc----------ccc-
Confidence 88999999999999999999984 45999999999999999999999999999999999998531 111
Q ss_pred cccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhc----c-ccCCCC--cchHHHHHHHhcCCCeeecCC
Q 015562 285 EYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQ----H-VLHKYA--NEDVSLGSWFIGLDVEHIDDR 347 (404)
Q Consensus 285 e~~~f~d~~~~Yp~y~~G~gYvLS~dla~~I~~~~----~-~l~~~~--~EDV~vG~~l~~L~v~~id~~ 347 (404)
.+.| -.+|++|++|+++.+.+++.. . ....+. .||+-+|.|++.+||...|.+
T Consensus 210 --------~~~y--~~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~~ 269 (364)
T KOG2246|consen 210 --------QNGY--SSGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDER 269 (364)
T ss_pred --------cccc--ccCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCch
Confidence 1122 247999999999998877632 1 233343 899999999999999988773
No 10
>PLN03153 hypothetical protein; Provisional
Probab=99.07 E-value=1.4e-09 Score=113.39 Aligned_cols=184 Identities=19% Similarity=0.141 Sum_probs=114.8
Q ss_pred CeeEEEEEECCCCCH-HHHHHHHHHHHhhhhhhhhccccCcEEEEEEeeccCCCCChhHHHHHHHHhhcCCeee-cC---
Q 015562 134 RYLMVVGINTAFSSR-KRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMR-LD--- 208 (404)
Q Consensus 134 ~~~lvI~V~S~~~~~-~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~-ld--- 208 (404)
--.++++|.+..+.. +|+..|+.+|.+.. -. -++|+.....+. ..+..| --|-+ .|
T Consensus 121 ~~hIvF~I~~s~~~w~~R~~yik~wW~p~~--------~r--g~v~ld~~~~~~--~~~~~~-------P~i~is~d~s~ 181 (537)
T PLN03153 121 LNHIMFGIAGSSQLWKRRKELVRLWWRPNQ--------MR--GHVWLEEQVSPE--EGDDSL-------PPIMVSEDTSR 181 (537)
T ss_pred cccEEEEEEEchhhhhhhhhhhhhhcCccc--------ce--eEEEecccCCCC--CCcCCC-------CCEEeCCCccc
Confidence 356899999888766 56699999999752 11 134443322110 000000 00100 01
Q ss_pred Cc-ccccchhHHHH--HHHHHHHh--cCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccCCCcccc
Q 015562 209 HV-EGYLELSAKTK--IYFATAVS--LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHE 283 (404)
Q Consensus 209 ~~-DsY~nLt~Ktl--~~~~wa~~--~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~ 283 (404)
|. +...+...... .+...+.. .++++||+++|||+|+.+++|++.|..+++....|+|..... .
T Consensus 182 f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~-----------~ 250 (537)
T PLN03153 182 FRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSES-----------H 250 (537)
T ss_pred ccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccc-----------c
Confidence 10 11112222111 12333333 589999999999999999999999999999999999975310 0
Q ss_pred CcccccCCCCCCCCCCC-CCCceeeCHHHHHHHHHhcc-ccCC---CCcchHHHHHHHhcCCCeeecCCCcccCC
Q 015562 284 PEYWKFGEAGNRYFRHA-TGQLYAISKDLAAYISINQH-VLHK---YANEDVSLGSWFIGLDVEHIDDRRLCCGT 353 (404)
Q Consensus 284 pe~~~f~d~~~~Yp~y~-~G~gYvLS~dla~~I~~~~~-~l~~---~~~EDV~vG~~l~~L~v~~id~~~f~~~~ 353 (404)
+...+| .| .|+ +|+||+||+.+++.|..... .... ..-+|.-+|.|+..+||...++++|+...
T Consensus 251 ~qn~~f-----~~-~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D 319 (537)
T PLN03153 251 SANSYF-----SH-NMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWD 319 (537)
T ss_pred cccccc-----cc-ccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccccc
Confidence 000011 11 133 89999999999999887532 2222 23588899999999999999999998865
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.0016 Score=68.10 Aligned_cols=198 Identities=17% Similarity=0.219 Sum_probs=117.3
Q ss_pred eEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhccccCcEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCcccccc
Q 015562 136 LMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLE 215 (404)
Q Consensus 136 ~lvI~V~S~~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~DsY~n 215 (404)
+|+++|+|. ..---+|-.|=+.... ++.|+++.+... .|.-+++.+-.|..
T Consensus 27 rl~~aVmte---~tlA~a~NrT~ahhvp-----------rv~~F~~~~~i~---------------~~~a~~~~vs~~d~ 77 (681)
T KOG3708|consen 27 RLMAAVMTE---STLALAINRTLAHHVP-----------RVHLFADSSRID---------------NDLAQLTNVSPYDL 77 (681)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhcc-----------eeEEeecccccc---------------ccHhhccccCcccc
Confidence 455666661 1344556666655421 556777765421 22223333333333
Q ss_pred hhHHHH-HHHHHHHh--cCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccCCCccccCcccccCCC
Q 015562 216 LSAKTK-IYFATAVS--LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEA 292 (404)
Q Consensus 216 Lt~Ktl-~~~~wa~~--~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~f~d~ 292 (404)
-..|+. +.+.+..+ .-++||++-+-||+|||...|++++....-...+|+|.-. --| +
T Consensus 78 r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~------------------~~g-s 138 (681)
T KOG3708|consen 78 RGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEA------------------EDG-S 138 (681)
T ss_pred CccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhh------------------hCc-c
Confidence 334443 34455444 3489999999999999999999999888778899999311 000 1
Q ss_pred CCCCCCCC-CCCceeeCHHHHHHHHHhccccCCC---CcchHHHHHHHh---cCCCeeecC--CCcccC--CCC----Cc
Q 015562 293 GNRYFRHA-TGQLYAISKDLAAYISINQHVLHKY---ANEDVSLGSWFI---GLDVEHIDD--RRLCCG--TPP----DC 357 (404)
Q Consensus 293 ~~~Yp~y~-~G~gYvLS~dla~~I~~~~~~l~~~---~~EDV~vG~~l~---~L~v~~id~--~~f~~~--~~~----~c 357 (404)
+ . | .|.||+||+.++..+-.|-.-.+.+ .-.|+.+|.|+. +++.++.|. +.|... +|. .-
T Consensus 139 ~-r----C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~hQGvrq~s~~~dspgr~~~~~ 213 (681)
T KOG3708|consen 139 G-R----CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPLHQGVRQYSEREDSPGRHDSIP 213 (681)
T ss_pred C-c----cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccchhhhHHhhhHhhcCCCccccch
Confidence 1 1 6 5899999999999998875433322 457899999994 666555443 223221 222 35
Q ss_pred ccccccCCccccccccccccc--cCcHHHHHHHHHHcc
Q 015562 358 EWKAQAGNICVASFDWTCSGI--CRSADRIKEVHRRCG 393 (404)
Q Consensus 358 ewk~~~~~~c~~~~~~~~sgi--c~~~~~m~~vH~~~~ 393 (404)
||+... .|. +.+.+ ..+++.|-.+|.+..
T Consensus 214 e~~~s~------aFr-~A~tv~pv~~p~d~yrLH~yfs 244 (681)
T KOG3708|consen 214 EWEGSP------AFR-SALTVHPVLSPADMYRLHKYFS 244 (681)
T ss_pred hhcCCh------HHh-hhhccCccCCHHHHHHHHHHHH
Confidence 665211 010 11111 156788888888753
No 12
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=95.80 E-value=0.21 Score=45.84 Aligned_cols=93 Identities=14% Similarity=0.140 Sum_probs=51.4
Q ss_pred EEEECCCCCHHHHHHHHHHHHhhhhhhhhccccCcEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecC-----Ccccc
Q 015562 139 VGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLD-----HVEGY 213 (404)
Q Consensus 139 I~V~S~~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld-----~~DsY 213 (404)
|.|.|-+.+.+||+.|.+..... ++.+-|+-+..... ++. .+....+..-.... ..-+-
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL-----------GINFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcce
Confidence 45667788899999998876643 44566776665431 111 11111121111110 11111
Q ss_pred cchhHHHHHHHHHHHhcCCcceEEEeCCceEecHH
Q 015562 214 LELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIA 248 (404)
Q Consensus 214 ~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~ 248 (404)
-.=.+--+..++-+++. +.++.+...||+.++.+
T Consensus 68 iGC~lSH~~~w~~~v~~-~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVDS-GLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHHc-CCCeEEEEecccccccc
Confidence 11123444566666653 67999999999999975
No 13
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=95.16 E-value=0.47 Score=43.62 Aligned_cols=114 Identities=13% Similarity=0.009 Sum_probs=57.3
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhc-CCCCCeEEEEecc--CcccccCC-----CccccCcccccCCCCC
Q 015562 223 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRH-RSKPRVYIGCMKS--GPVLNQKG-----VRYHEPEYWKFGEAGN 294 (404)
Q Consensus 223 ~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~-~~~~~lYiG~~~~--gpv~r~~~-----~Kwy~pe~~~f~d~~~ 294 (404)
.++++.+..+.+|++.+|||+.+.++.|..++... .+.-....|.+.. +...-... ..|+... ........
T Consensus 77 a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 155 (228)
T PF13641_consen 77 ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRF-RSGRRALG 155 (228)
T ss_dssp HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS--TT-B---
T ss_pred HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhh-hhhhcccc
Confidence 44666665679999999999999999988888776 3333333333321 11000000 0111110 11111111
Q ss_pred CCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCe
Q 015562 295 RYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 342 (404)
Q Consensus 295 ~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 342 (404)
. .++.|++.++.++++..+-.-.. ....||..++.-+...|.+
T Consensus 156 -~-~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~ 198 (228)
T PF13641_consen 156 -V-AFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWR 198 (228)
T ss_dssp ---S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--
T ss_pred -e-eeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCc
Confidence 1 34579999999999999853222 3446999999998755544
No 14
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=95.01 E-value=0.71 Score=46.99 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=84.4
Q ss_pred cEEEEEEeeccCCCCChhHHHHHHHHhhcCC--eeecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHH
Q 015562 173 GIIMRFVIGHSATSGGILDRAIEAEDRKHGD--FMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATL 250 (404)
Q Consensus 173 ~v~v~FviG~s~~~~~~~~~~L~~E~~~~~D--iL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L 250 (404)
.+.++|+...+. +.....+++=.+.|.+ +..+...+ -.....|.-...+ +.+..+.+|++..|+|+.+.++.|
T Consensus 70 ~~EIivvdd~s~---D~t~~iv~~~~~~~p~~~i~~v~~~~-~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L 144 (373)
T TIGR03472 70 GFQMLFGVQDPD---DPALAVVRRLRADFPDADIDLVIDAR-RHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYL 144 (373)
T ss_pred CeEEEEEeCCCC---CcHHHHHHHHHHhCCCCceEEEECCC-CCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHH
Confidence 477777665543 2222333332345665 32221111 1223356655444 445568999999999999999999
Q ss_pred HHHHHhcCCCCCe-EEEEeccCcccccCCC-----------ccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHh
Q 015562 251 GQTLVRHRSKPRV-YIGCMKSGPVLNQKGV-----------RYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISIN 318 (404)
Q Consensus 251 ~~~L~~~~~~~~l-YiG~~~~gpv~r~~~~-----------Kwy~pe~~~f~d~~~~Yp~y~~G~gYvLS~dla~~I~~~ 318 (404)
...+.... .+++ .+++.... ....+ -++.|.... ... ..-+.+|.|+.+++.+++.+.+---
T Consensus 145 ~~lv~~~~-~~~v~~V~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~-~~~-~~~~~~~~G~~~a~RR~~l~~iGGf 218 (373)
T TIGR03472 145 RQVVAPLA-DPDVGLVTCLYRG---RPVPGFWSRLGAMGINHNFLPSVMV-ARA-LGRARFCFGATMALRRATLEAIGGL 218 (373)
T ss_pred HHHHHHhc-CCCcceEeccccC---CCCCCHHHHHHHHHhhhhhhHHHHH-HHh-ccCCccccChhhheeHHHHHHcCCh
Confidence 88887763 2332 22222111 11111 011111000 000 0113458899999999999987643
Q ss_pred ccccCCCCcchHHHHHHHhcCCCe
Q 015562 319 QHVLHKYANEDVSLGSWFIGLDVE 342 (404)
Q Consensus 319 ~~~l~~~~~EDV~vG~~l~~L~v~ 342 (404)
... .....||+.+|.-+...|.+
T Consensus 219 ~~~-~~~~~ED~~l~~~i~~~G~~ 241 (373)
T TIGR03472 219 AAL-AHHLADDYWLGELVRALGLR 241 (373)
T ss_pred HHh-cccchHHHHHHHHHHHcCCe
Confidence 222 22236999999999655533
No 15
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.12 E-value=1.3 Score=40.34 Aligned_cols=166 Identities=15% Similarity=-0.033 Sum_probs=83.8
Q ss_pred EEEEEEeeccCCCCChhHHHHHHHHhh--cCCeeecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHH
Q 015562 174 IIMRFVIGHSATSGGILDRAIEAEDRK--HGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLG 251 (404)
Q Consensus 174 v~v~FviG~s~~~~~~~~~~L~~E~~~--~~DiL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~ 251 (404)
+.++.|-+.+. + .....+. +... +..+..++..+. .+. .|. ..++++......+|++.+|+|..+.++.|.
T Consensus 29 ~eiivvdd~s~--d-~t~~~~~-~~~~~~~~~v~~~~~~~~-~~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~ 101 (229)
T cd04192 29 FEVILVDDHST--D-GTVQILE-FAAAKPNFQLKILNNSRV-SIS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLL 101 (229)
T ss_pred eEEEEEcCCCC--c-ChHHHHH-HHHhCCCcceEEeeccCc-ccc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHH
Confidence 56666665543 2 2333343 2222 234444544431 222 222 345666666689999999999999999888
Q ss_pred HHHHhcCCC-CCeEEEEeccCcc---ccc-CCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCC
Q 015562 252 QTLVRHRSK-PRVYIGCMKSGPV---LNQ-KGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYA 326 (404)
Q Consensus 252 ~~L~~~~~~-~~lYiG~~~~gpv---~r~-~~~Kwy~pe~~~f~d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~ 326 (404)
.++...... ..++.|.....+. ... ....+........+.....++..+.|+++++++++...+---.... ...
T Consensus 102 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~~-~~~ 180 (229)
T cd04192 102 TFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEGND-HIA 180 (229)
T ss_pred HHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCcccc-ccc
Confidence 888754332 2344444221100 000 0000000000000001234555678999999999999875433222 234
Q ss_pred cchHHHHHHH--hcC-CCeeecCC
Q 015562 327 NEDVSLGSWF--IGL-DVEHIDDR 347 (404)
Q Consensus 327 ~EDV~vG~~l--~~L-~v~~id~~ 347 (404)
.||..++.-+ .+. .+..+.++
T Consensus 181 ~eD~~~~~~~~~~g~~~~~~~~~~ 204 (229)
T cd04192 181 SGDDELLLAKVASKYPKVAYLKNP 204 (229)
T ss_pred cCCHHHHHHHHHhCCCCEEEeeCc
Confidence 5776665544 344 44444333
No 16
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=93.65 E-value=4.5 Score=36.60 Aligned_cols=134 Identities=18% Similarity=0.134 Sum_probs=78.2
Q ss_pred cEEEEEEeeccCCCCChhHHHHHHHHhhcC--CeeecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHH
Q 015562 173 GIIMRFVIGHSATSGGILDRAIEAEDRKHG--DFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATL 250 (404)
Q Consensus 173 ~v~v~FviG~s~~~~~~~~~~L~~E~~~~~--DiL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L 250 (404)
.+.+++|...+. + .....+++-...|. ++..+...... ....|.. .+..+.+....+|++..|+|+.+.++.|
T Consensus 30 ~~eiivVdd~s~--d-~t~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l 104 (196)
T cd02520 30 KYEILFCVQDED--D-PAIPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYL 104 (196)
T ss_pred CeEEEEEeCCCc--c-hHHHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHH
Confidence 367777776664 2 22334444445554 22222111111 1223433 2445555567999999999999999888
Q ss_pred HHHHHhcCCCCCeEEEEeccCcccccCCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchH
Q 015562 251 GQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDV 330 (404)
Q Consensus 251 ~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~f~d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV 330 (404)
..++.... .+. +|.+.+ .++.|++.++.+++.+.+.--.. ...+..||.
T Consensus 105 ~~l~~~~~-~~~--~~~v~~---------------------------~~~~g~~~~~r~~~~~~~ggf~~-~~~~~~eD~ 153 (196)
T cd02520 105 RRMVAPLM-DPG--VGLVTC---------------------------LCAFGKSMALRREVLDAIGGFEA-FADYLAEDY 153 (196)
T ss_pred HHHHHHhh-CCC--CCeEEe---------------------------ecccCceeeeEHHHHHhccChHH-HhHHHHHHH
Confidence 88876542 222 122110 04678999999999988743321 222347999
Q ss_pred HHHHHHhcCCCe
Q 015562 331 SLGSWFIGLDVE 342 (404)
Q Consensus 331 ~vG~~l~~L~v~ 342 (404)
.++.-+...|.+
T Consensus 154 ~l~~rl~~~G~~ 165 (196)
T cd02520 154 FLGKLIWRLGYR 165 (196)
T ss_pred HHHHHHHHcCCe
Confidence 999988655533
No 17
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=93.64 E-value=3.8 Score=37.68 Aligned_cols=160 Identities=12% Similarity=-0.011 Sum_probs=80.9
Q ss_pred CcEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHH
Q 015562 172 KGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLG 251 (404)
Q Consensus 172 ~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~ 251 (404)
..+.++.|-+.+. +.....++...+++..+......+. ... ..++.+.+....+|++.+|||..+.++.|.
T Consensus 30 ~~~evivvd~~s~---d~~~~~~~~~~~~~~~v~~i~~~~~--~~~----~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~ 100 (249)
T cd02525 30 DLIEIIVVDGGST---DGTREIVQEYAAKDPRIRLIDNPKR--IQS----AGLNIGIRNSRGDIIIRVDAHAVYPKDYIL 100 (249)
T ss_pred CccEEEEEeCCCC---ccHHHHHHHHHhcCCeEEEEeCCCC--Cch----HHHHHHHHHhCCCEEEEECCCccCCHHHHH
Confidence 3556666655543 2334444444444333433322211 111 356666665689999999999999998888
Q ss_pred HHHHhcCCCC-CeEEEEecc--Cccccc-----CCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccC
Q 015562 252 QTLVRHRSKP-RVYIGCMKS--GPVLNQ-----KGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLH 323 (404)
Q Consensus 252 ~~L~~~~~~~-~lYiG~~~~--gpv~r~-----~~~Kwy~pe~~~f~d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~ 323 (404)
.++......+ .+..|.... ...... ....+.....+... ....+-.++.|++.++++++...+......
T Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 177 (249)
T cd02525 101 ELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRG-GAVKIGYVDTVHHGAYRREVFEKVGGFDES-- 177 (249)
T ss_pred HHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccc-cccccccccccccceEEHHHHHHhCCCCcc--
Confidence 8886553322 333344321 111000 00000000000000 000101145678889999998887433222
Q ss_pred CCCcchHHHHHHHhcCCCee
Q 015562 324 KYANEDVSLGSWFIGLDVEH 343 (404)
Q Consensus 324 ~~~~EDV~vG~~l~~L~v~~ 343 (404)
....||..++.-+...|.+.
T Consensus 178 ~~~~eD~~l~~r~~~~G~~~ 197 (249)
T cd02525 178 LVRNEDAELNYRLRKAGYKI 197 (249)
T ss_pred cCccchhHHHHHHHHcCcEE
Confidence 22479999987776555443
No 18
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=93.23 E-value=3.5 Score=40.15 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=68.8
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEE-ec--cCcccc--cC------------CCccccC-
Q 015562 223 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGC-MK--SGPVLN--QK------------GVRYHEP- 284 (404)
Q Consensus 223 ~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~-~~--~gpv~r--~~------------~~Kwy~p- 284 (404)
+.+.+.+....+|++..|+|+.+.++-|..++......+...+|. +. .+.-.. .. ...|...
T Consensus 74 a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (299)
T cd02510 74 ARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLP 153 (299)
T ss_pred HHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCC
Confidence 445555555789999999999999888887776654333333332 11 000000 00 0111111
Q ss_pred ccc-ccCC-CCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHH--hcCCCeeecCC
Q 015562 285 EYW-KFGE-AGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWF--IGLDVEHIDDR 347 (404)
Q Consensus 285 e~~-~f~d-~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l--~~L~v~~id~~ 347 (404)
... .... +.....++++|++.++++++...+---...+..+..||+-+..=+ .|..+..+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a 220 (299)
T cd02510 154 EEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCS 220 (299)
T ss_pred HHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeecc
Confidence 000 0000 012233567899999999999988654445555567998775444 56555544443
No 19
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=92.73 E-value=3.1 Score=42.52 Aligned_cols=159 Identities=18% Similarity=0.127 Sum_probs=80.9
Q ss_pred cEEEEEEeeccCCCCChhHHHHHHHHhhcC---CeeecCCcccccchhHHHH---HHHHHHHh-cCCcceEEEeCCceEe
Q 015562 173 GIIMRFVIGHSATSGGILDRAIEAEDRKHG---DFMRLDHVEGYLELSAKTK---IYFATAVS-LWDADFYVKVDDDVHV 245 (404)
Q Consensus 173 ~v~v~FviG~s~~~~~~~~~~L~~E~~~~~---DiL~ld~~DsY~nLt~Ktl---~~~~wa~~-~~~a~f~lKvDDDvfV 245 (404)
.+.+++|-..|.+ + ....+++-.+++. .+..+...+.-.+-..|.. .+++.|.. ..+.+|++.+|+|+.+
T Consensus 70 ~~eIIVVDd~StD--~-T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~ 146 (384)
T TIGR03469 70 KLHVILVDDHSTD--G-TADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAH 146 (384)
T ss_pred ceEEEEEeCCCCC--c-HHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCC
Confidence 4677777666542 2 2222322223333 3444432221122234432 34444443 2348999999999999
Q ss_pred cHHHHHHHHHhcCCCCCeEEEEeccCcccccCC--CccccC-----------cccccCCCCCCCCCCCCCCceeeCHHHH
Q 015562 246 NIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKG--VRYHEP-----------EYWKFGEAGNRYFRHATGQLYAISKDLA 312 (404)
Q Consensus 246 n~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~--~Kwy~p-----------e~~~f~d~~~~Yp~y~~G~gYvLS~dla 312 (404)
.++.|.+.++.....+...++.+.. .+..+ .+...| -.|. .+ .......+.|++.++++++.
T Consensus 147 ~p~~l~~lv~~~~~~~~~~vs~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~G~~~lirr~~~ 221 (384)
T TIGR03469 147 GPDNLARLVARARAEGLDLVSLMVR---LRCESFWEKLLIPAFVFFFQKLYPFRWV-ND-PRRRTAAAAGGCILIRREAL 221 (384)
T ss_pred ChhHHHHHHHHHHhCCCCEEEeccc---ccCCCHHHHHHHHHHHHHHHHhcchhhh-cC-CCccceeecceEEEEEHHHH
Confidence 9998888886653322222222110 00000 000001 0111 01 11223446799999999999
Q ss_pred HHHHHhccccCCCCcchHHHHHHHhcCC
Q 015562 313 AYISINQHVLHKYANEDVSLGSWFIGLD 340 (404)
Q Consensus 313 ~~I~~~~~~l~~~~~EDV~vG~~l~~L~ 340 (404)
+.+---..... ...||+.++.-+...|
T Consensus 222 ~~vGGf~~~~~-~~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 222 ERIGGIAAIRG-ALIDDCTLAAAVKRSG 248 (384)
T ss_pred HHcCCHHHHhh-CcccHHHHHHHHHHcC
Confidence 98743322212 2479999999886543
No 20
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=92.20 E-value=0.44 Score=43.63 Aligned_cols=119 Identities=16% Similarity=0.096 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCC-CCCeEEEEeccCcccccCCCcc--cc-------Ccc
Q 015562 217 SAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRS-KPRVYIGCMKSGPVLNQKGVRY--HE-------PEY 286 (404)
Q Consensus 217 t~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~-~~~lYiG~~~~gpv~r~~~~Kw--y~-------pe~ 286 (404)
..|+-.......+....++++..|+|+.|+++-|..++..... +-.+ +.++..+ ....+-| .+ +.-
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vgl-Vt~~~~~---~~~~~~~~~l~~~~~~~~~~~ 91 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGL-VTGLPRG---VPARGFWSRLEAAFFNFLPGV 91 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcE-EEecccc---cCCcCHHHHHHHHHHhHHHHH
Confidence 3566555543332368999999999999999999888876643 2222 2222111 1111111 01 111
Q ss_pred cccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCeee
Q 015562 287 WKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVEHI 344 (404)
Q Consensus 287 ~~f~d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~~i 344 (404)
+.. -...+++.|+.+++.+++++.+--- ..+..+--||..+|..+...|.+.+
T Consensus 92 ~~a----~~~~~~~~G~~m~~rr~~L~~~GG~-~~l~~~ladD~~l~~~~~~~G~~v~ 144 (175)
T PF13506_consen 92 LQA----LGGAPFAWGGSMAFRREALEEIGGF-EALADYLADDYALGRRLRARGYRVV 144 (175)
T ss_pred HHH----hcCCCceecceeeeEHHHHHHcccH-HHHhhhhhHHHHHHHHHHHCCCeEE
Confidence 110 1235789999999999999887322 1233356899999999987776654
No 21
>PRK11204 N-glycosyltransferase; Provisional
Probab=92.09 E-value=7.4 Score=39.83 Aligned_cols=190 Identities=13% Similarity=0.095 Sum_probs=98.6
Q ss_pred eeEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhccccCcEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCccccc
Q 015562 135 YLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYL 214 (404)
Q Consensus 135 ~~lvI~V~S~~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~DsY~ 214 (404)
+.+-|.|.+.-.. +.|++|-.+-.. .. .....++.|-..+ ++...+.+++..+++..+..++..+
T Consensus 54 p~vsViIp~yne~----~~i~~~l~sl~~----q~-yp~~eiiVvdD~s---~d~t~~~l~~~~~~~~~v~~i~~~~--- 118 (420)
T PRK11204 54 PGVSILVPCYNEG----ENVEETISHLLA----LR-YPNYEVIAINDGS---SDNTGEILDRLAAQIPRLRVIHLAE--- 118 (420)
T ss_pred CCEEEEEecCCCH----HHHHHHHHHHHh----CC-CCCeEEEEEECCC---CccHHHHHHHHHHhCCcEEEEEcCC---
Confidence 4566666653322 446666554321 11 1234444443322 2234444555555566565554333
Q ss_pred chhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccCCCccccC----ccc---
Q 015562 215 ELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEP----EYW--- 287 (404)
Q Consensus 215 nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~p----e~~--- 287 (404)
|.. |. ..++.+.+..+.+|++..|+|..+.++.|.+.++.....+++ |.+.+.+...+.. .+... ++.
T Consensus 119 n~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--~~v~g~~~~~~~~-~~~~~~~~~~~~~~~ 193 (420)
T PRK11204 119 NQG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--GAVTGNPRIRNRS-TLLGRIQVGEFSSII 193 (420)
T ss_pred CCC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--EEEECCceeccch-hHHHHHHHHHHHHhh
Confidence 222 32 345666666689999999999999999988888776433442 3332222222211 11100 000
Q ss_pred ---ccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHh--cCCCeeecCC
Q 015562 288 ---KFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHIDDR 347 (404)
Q Consensus 288 ---~f~d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~id~~ 347 (404)
+........+...+|.+.++.++++..+---. +....||+-++.-+. |..+...++.
T Consensus 194 ~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~---~~~~~ED~~l~~rl~~~G~~i~~~p~~ 255 (420)
T PRK11204 194 GLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWS---TDMITEDIDISWKLQLRGWDIRYEPRA 255 (420)
T ss_pred hHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCC---CCcccchHHHHHHHHHcCCeEEecccc
Confidence 00000001122357888999999998763221 223479999988885 4445555443
No 22
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.92 E-value=7.3 Score=34.86 Aligned_cols=178 Identities=13% Similarity=0.030 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhhhhhhhccccCcEEEEEEeeccCCCCChhHHHHHHHHhhcC-CeeecCCcccccchhHHHHHHHHHHHh
Q 015562 151 RDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHG-DFMRLDHVEGYLELSAKTKIYFATAVS 229 (404)
Q Consensus 151 R~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~-DiL~ld~~DsY~nLt~Ktl~~~~wa~~ 229 (404)
-+.|.++.-+.... ....+.+++|-..+. + .....+++-..++. .+.......+. ... ..+..+..
T Consensus 10 ~~~l~~~l~sl~~q-----~~~~~eiiVvddgS~--d-~t~~~~~~~~~~~~~~~~~~~~~~~~-G~~----~~~n~g~~ 76 (214)
T cd04196 10 EKYLREQLDSILAQ-----TYKNDELIISDDGST--D-GTVEIIKEYIDKDPFIIILIRNGKNL-GVA----RNFESLLQ 76 (214)
T ss_pred HHHHHHHHHHHHhC-----cCCCeEEEEEeCCCC--C-CcHHHHHHHHhcCCceEEEEeCCCCc-cHH----HHHHHHHH
Confidence 36677777765321 122567777665443 2 23333443334443 23333332222 122 23333455
Q ss_pred cCCcceEEEeCCceEecHHHHHHHHHh-cC-CCCCeEEEEec----cCcccccCCC--ccccCcccccCCCCCCCCCCCC
Q 015562 230 LWDADFYVKVDDDVHVNIATLGQTLVR-HR-SKPRVYIGCMK----SGPVLNQKGV--RYHEPEYWKFGEAGNRYFRHAT 301 (404)
Q Consensus 230 ~~~a~f~lKvDDDvfVn~~~L~~~L~~-~~-~~~~lYiG~~~----~gpv~r~~~~--Kwy~pe~~~f~d~~~~Yp~y~~ 301 (404)
....+|++..|+|..+.++.|..++.. .. +...++.|.+. .+.+.....- ..+.+..-. .......+..
T Consensus 77 ~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 153 (214)
T cd04196 77 AADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSF---NNLLFQNVVT 153 (214)
T ss_pred hCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCH---HHHHHhCccC
Confidence 568999999999999999888888876 22 22233333321 1111111000 000000000 0011224567
Q ss_pred CCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcC-CCeeecC
Q 015562 302 GQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGL-DVEHIDD 346 (404)
Q Consensus 302 G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L-~v~~id~ 346 (404)
|+++++.+++++.+....... ...||..+...+... .+..++.
T Consensus 154 ~~~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~ 197 (214)
T cd04196 154 GCTMAFNRELLELALPFPDAD--VIMHDWWLALLASAFGKVVFLDE 197 (214)
T ss_pred CceeeEEHHHHHhhccccccc--cccchHHHHHHHHHcCceEEcch
Confidence 899999999999876543322 357888877666543 3444443
No 23
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=91.03 E-value=6.5 Score=35.89 Aligned_cols=120 Identities=13% Similarity=0.017 Sum_probs=68.2
Q ss_pred HHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeE-E-EEec--c-Ccc---cccC--CCccccCc-ccccCCC
Q 015562 224 FATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVY-I-GCMK--S-GPV---LNQK--GVRYHEPE-YWKFGEA 292 (404)
Q Consensus 224 ~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lY-i-G~~~--~-gpv---~r~~--~~Kwy~pe-~~~f~d~ 292 (404)
+..+.+..+.+|++.+|+|.++.++.|..++......+++. + |... . ... .+.. ....+... .+. .
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 152 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPG---R 152 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHH---H
Confidence 45555555899999999999999998888887764434321 1 2111 0 000 0000 00000000 000 0
Q ss_pred CCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeeecCCCc
Q 015562 293 GNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDDRRL 349 (404)
Q Consensus 293 ~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~id~~~f 349 (404)
......++.|++.++++++.+.+.--. ..+..||..++.-+...+ +..+++...
T Consensus 153 ~~~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~~ 208 (234)
T cd06421 153 DRWGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPLA 208 (234)
T ss_pred hhcCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCccc
Confidence 011244678999999999998864322 234479999998886554 555555443
No 24
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=91.02 E-value=2.9 Score=35.25 Aligned_cols=136 Identities=13% Similarity=0.081 Sum_probs=64.5
Q ss_pred CcEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHH
Q 015562 172 KGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLG 251 (404)
Q Consensus 172 ~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~ 251 (404)
..+.+++|-..+. +.....+.+-.+....+..+...+.. .+. ..+..+.+....+|++.+|||.++..+.|.
T Consensus 26 ~~~eiivvdd~s~---d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~----~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~ 97 (169)
T PF00535_consen 26 PDFEIIVVDDGST---DETEEILEEYAESDPNIRYIRNPENL-GFS----AARNRGIKHAKGEYILFLDDDDIISPDWLE 97 (169)
T ss_dssp CEEEEEEEECS-S---SSHHHHHHHHHCCSTTEEEEEHCCCS-HHH----HHHHHHHHH--SSEEEEEETTEEE-TTHHH
T ss_pred CCEEEEEeccccc---cccccccccccccccccccccccccc-ccc----ccccccccccceeEEEEeCCCceEcHHHHH
Confidence 3456655554442 23444443333323444444444332 222 344444454566799999999999988776
Q ss_pred HHHHhcCC-CCCeEEEEec--cCc--ccccCCC--ccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHH
Q 015562 252 QTLVRHRS-KPRVYIGCMK--SGP--VLNQKGV--RYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYI 315 (404)
Q Consensus 252 ~~L~~~~~-~~~lYiG~~~--~gp--v~r~~~~--Kwy~pe~~~f~d~~~~Yp~y~~G~gYvLS~dla~~I 315 (404)
.++..... ...+.+|... ... ....... .+..............-..++.|++.++++++.+.+
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 98 ELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 66665543 3345555532 111 1000000 111110000000112333467888999999988764
No 25
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=89.37 E-value=6.1 Score=33.16 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=51.5
Q ss_pred HHHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCC--eEEEEecc---C-ccccc-CCCccccCccccc-CCCC
Q 015562 222 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPR--VYIGCMKS---G-PVLNQ-KGVRYHEPEYWKF-GEAG 293 (404)
Q Consensus 222 ~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~--lYiG~~~~---g-pv~r~-~~~Kwy~pe~~~f-~d~~ 293 (404)
..+.++.+..+.+|++.+|+|..+....|..++......+. +..|.... . ..... ....+........ +...
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSA 147 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhe
Confidence 35555666569999999999999998888877555433332 22233221 1 11100 0011111100000 0001
Q ss_pred CCCCCCCCCCceeeCHHHHHHHH
Q 015562 294 NRYFRHATGQLYAISKDLAAYIS 316 (404)
Q Consensus 294 ~~Yp~y~~G~gYvLS~dla~~I~ 316 (404)
..+...+.|.+++++++++..+-
T Consensus 148 ~~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 148 LGGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred ecceeecCchHHHHHHHHHHHhC
Confidence 23445678999999999988765
No 26
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=88.80 E-value=6.2 Score=33.97 Aligned_cols=117 Identities=12% Similarity=0.056 Sum_probs=65.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHhhhhhhhhccccCcEEEEEEeeccCCCCChhHHHHHHHHhhcCC-eeecCCcccccchh
Q 015562 139 VGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGD-FMRLDHVEGYLELS 217 (404)
Q Consensus 139 I~V~S~~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~D-iL~ld~~DsY~nLt 217 (404)
|.|.+-+.+.+||+.+++.-... ++.+.|+-|..... .....+......+.. ....+..-+.-.-.
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~~~~~Avd~~~--~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~ 68 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL-----------GLDFEFFDAVDGKD--LSEEELAALYDALFLPRYGRPLTPGEIGCF 68 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCCeEEEecccccc--CCHHHHHHHhHHHhhhhcCCCCChhhHHHH
Confidence 34567788899999999854432 45566777665421 111111111110000 00001111111112
Q ss_pred HHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccCCCccccCcccccCCCCCCCC
Q 015562 218 AKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYF 297 (404)
Q Consensus 218 ~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~f~d~~~~Yp 297 (404)
+--+..++.+++ .+.++.+...||+.+..+
T Consensus 69 lSH~~~w~~~~~-~~~~~alIlEDDv~~~~~------------------------------------------------- 98 (128)
T cd06532 69 LSHYKLWQKIVE-SNLEYALILEDDAILDPD------------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHHH-cCCCeEEEEccCcEECCC-------------------------------------------------
Confidence 333345555554 366899999999988866
Q ss_pred CCCCCCceeeCHHHHHHHHHhccc
Q 015562 298 RHATGQLYAISKDLAAYISINQHV 321 (404)
Q Consensus 298 ~y~~G~gYvLS~dla~~I~~~~~~ 321 (404)
+..+|++|+..|+.+......
T Consensus 99 ---~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 ---GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred ---CceEEEeCHHHHHHHHHhCCC
Confidence 346899999999999987644
No 27
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.27 E-value=15 Score=31.15 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=56.1
Q ss_pred HHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCCe-EEEEeccCcccccCCCccccCcccccCCCCCCCCCCCCCCc
Q 015562 226 TAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRV-YIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQL 304 (404)
Q Consensus 226 wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~l-YiG~~~~gpv~r~~~~Kwy~pe~~~f~d~~~~Yp~y~~G~g 304 (404)
-+.+..+.+|++.+|||..+.++.+..++......+.+ .++.. +.|++
T Consensus 68 ~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~ 116 (166)
T cd04186 68 QGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-------------------------------VSGAF 116 (166)
T ss_pred HHHhhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-------------------------------Cceee
Confidence 33444489999999999999999888888754333321 11111 56888
Q ss_pred eeeCHHHHHHHHHhccccCCCCcchHHHHHHHh--cCCCeee
Q 015562 305 YAISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHI 344 (404)
Q Consensus 305 YvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~i 344 (404)
.++++++++.+..-...... ..||..+..-+. |..+...
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~i~~~ 157 (166)
T cd04186 117 LLVRREVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYRVLYV 157 (166)
T ss_pred EeeeHHHHHHcCCCChhhhc-cccHHHHHHHHHHcCCeEEEc
Confidence 99999988876432222222 568988877665 4444443
No 28
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=88.26 E-value=11 Score=33.64 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=61.9
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCC--CeEEEEecc----CcccccCCCccccCc----ccccCCC
Q 015562 223 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKP--RVYIGCMKS----GPVLNQKGVRYHEPE----YWKFGEA 292 (404)
Q Consensus 223 ~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~--~lYiG~~~~----gpv~r~~~~Kwy~pe----~~~f~d~ 292 (404)
.++.+....+.+|++..|+|.++.++.|...+......+ .++.|.+.. +.... .+. .|. ...+..
T Consensus 71 a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~- 145 (201)
T cd04195 71 ALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIG---KRR-LPTSHDDILKFAR- 145 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeec---ccc-CCCCHHHHHHHhc-
Confidence 455566656899999999999999998888887653333 344444321 11110 000 110 001100
Q ss_pred CCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHh--cCCCeeecCC
Q 015562 293 GNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHIDDR 347 (404)
Q Consensus 293 ~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~id~~ 347 (404)
..- + ..|+..++.+.+...+-.-. +....||..+...+. |..+.++++.
T Consensus 146 -~~~-~-~~~~~~~~rr~~~~~~g~~~---~~~~~eD~~~~~r~~~~g~~~~~~~~~ 196 (201)
T cd04195 146 -RRS-P-FNHPTVMFRKSKVLAVGGYQ---DLPLVEDYALWARMLANGARFANLPEI 196 (201)
T ss_pred -cCC-C-CCChHHhhhHHHHHHcCCcC---CCCCchHHHHHHHHHHcCCceecccHH
Confidence 011 1 24556677777766543221 124689999988875 5555555443
No 29
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=88.16 E-value=15 Score=34.18 Aligned_cols=120 Identities=17% Similarity=0.108 Sum_probs=61.9
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCC-CCCeEEEEecc-CcccccCCCc--cccCcccccCCCCCCCCC
Q 015562 223 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRS-KPRVYIGCMKS-GPVLNQKGVR--YHEPEYWKFGEAGNRYFR 298 (404)
Q Consensus 223 ~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~-~~~lYiG~~~~-gpv~r~~~~K--wy~pe~~~f~d~~~~Yp~ 298 (404)
.+..+.+....+|++.+|+|+.+..+-|.+++..... ...+..|.... .+.-...... |.....+..-......+.
T Consensus 100 a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (251)
T cd06439 100 ALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTV 179 (251)
T ss_pred HHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCee
Confidence 3455555556799999999999998888888877642 22333333221 1100000001 100000000000011233
Q ss_pred CCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeeecCCC
Q 015562 299 HATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDDRR 348 (404)
Q Consensus 299 y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~id~~~ 348 (404)
.+.|+++++.+++.. ..-.....||..++.-+...| +..+++..
T Consensus 180 ~~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~~~~~~~~~~ 225 (251)
T cd06439 180 GANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGYRVVYEPDAV 225 (251)
T ss_pred eecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCCeEEeccccE
Confidence 467888878887766 111223479999988886555 44444333
No 30
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=87.87 E-value=4.6 Score=35.69 Aligned_cols=136 Identities=10% Similarity=0.058 Sum_probs=73.8
Q ss_pred CcEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHH
Q 015562 172 KGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLG 251 (404)
Q Consensus 172 ~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~ 251 (404)
..+.++.|-+.+. ++ ....+.....++..+..+++...+. | -.+++.+......+|++.+|+|....++.|.
T Consensus 28 ~~~eiivvdd~s~--d~-t~~~~~~~~~~~~~i~~i~~~~n~G----~-~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 99 (181)
T cd04187 28 YDYEIIFVDDGST--DR-TLEILRELAARDPRVKVIRLSRNFG----Q-QAALLAGLDHARGDAVITMDADLQDPPELIP 99 (181)
T ss_pred CCeEEEEEeCCCC--cc-HHHHHHHHHhhCCCEEEEEecCCCC----c-HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 3456666665543 22 2333444444555555555443221 1 1344555555567999999999999988888
Q ss_pred HHHHhcCCCCCeEEEEeccC--cccccCCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHh
Q 015562 252 QTLVRHRSKPRVYIGCMKSG--PVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISIN 318 (404)
Q Consensus 252 ~~L~~~~~~~~lYiG~~~~g--pv~r~~~~Kwy~pe~~~f~d~~~~Yp~y~~G~gYvLS~dla~~I~~~ 318 (404)
.+++...+...+.+|..... +....-..+.+......+ .....+...|+.+++++++++.+..-
T Consensus 100 ~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~i~~~ 165 (181)
T cd04187 100 EMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKL---SGVDIPDNGGDFRLMDRKVVDALLLL 165 (181)
T ss_pred HHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHH---cCCCCCCCCCCEEEEcHHHHHHHHhc
Confidence 88876544556666664311 110000001110000000 11333456788899999999987743
No 31
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.75 E-value=18 Score=31.61 Aligned_cols=114 Identities=12% Similarity=-0.060 Sum_probs=63.4
Q ss_pred HHHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhc--CCCCCeEEEEec--cCcccccCCCccccCcccccCCCCCCCC
Q 015562 222 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRH--RSKPRVYIGCMK--SGPVLNQKGVRYHEPEYWKFGEAGNRYF 297 (404)
Q Consensus 222 ~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~--~~~~~lYiG~~~--~gpv~r~~~~Kwy~pe~~~f~d~~~~Yp 297 (404)
..++.+.+..+.+|++.+|+|..+..+.+...+... .+...+..|... .+... ....+...+. .. ......
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~-~~~~~~~~~~-~~---~~~~~~ 139 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGR-VIGRRRPPPF-LD---KFLLYG 139 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCC-cccCCCCcch-hh---hHHhhc
Confidence 345556665688999999999999999888887333 233445555532 11100 0010100010 00 011233
Q ss_pred CCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCe
Q 015562 298 RHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 342 (404)
Q Consensus 298 ~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 342 (404)
.+..|++.++++++.+.+..-...+ ...||..+..-+...+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~D~~~~~r~~~~g~~ 182 (202)
T cd06433 140 MPICHQATFFRRSLFEKYGGFDESY--RIAADYDLLLRLLLAGKI 182 (202)
T ss_pred CcccCcceEEEHHHHHHhCCCchhh--CchhhHHHHHHHHHcCCc
Confidence 4567788899999998875322222 235787776666544433
No 32
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=86.08 E-value=24 Score=31.34 Aligned_cols=111 Identities=13% Similarity=0.099 Sum_probs=60.1
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcC--CCCCeEEEEec---cCcccccCCCccccCcccccCCCCCCCC
Q 015562 223 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHR--SKPRVYIGCMK---SGPVLNQKGVRYHEPEYWKFGEAGNRYF 297 (404)
Q Consensus 223 ~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~--~~~~lYiG~~~---~gpv~r~~~~Kwy~pe~~~f~d~~~~Yp 297 (404)
.++++.+....+|++..|+|..+.++.|...++... ++..+..+... ...... ..++.+. |.. ...+.
T Consensus 74 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~-~~~---~~~~~ 146 (202)
T cd04184 74 ATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRS---EPFFKPD-WSP---DLLLS 146 (202)
T ss_pred HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEe---ccccCCC-CCH---HHhhh
Confidence 455555556789999999999999998888887652 22233322211 000000 0111111 110 00111
Q ss_pred CCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCe
Q 015562 298 RHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 342 (404)
Q Consensus 298 ~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 342 (404)
.-+.|++-+++++++..+-.-... ....||.-++.-+...|.+
T Consensus 147 ~~~~~~~~~~~r~~~~~iggf~~~--~~~~eD~~l~~rl~~~g~~ 189 (202)
T cd04184 147 QNYIGHLLVYRRSLVRQVGGFREG--FEGAQDYDLVLRVSEHTDR 189 (202)
T ss_pred cCCccceEeEEHHHHHHhCCCCcC--cccchhHHHHHHHHhccce
Confidence 113455567899888876532221 2246998888777655544
No 33
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=86.01 E-value=39 Score=35.26 Aligned_cols=190 Identities=13% Similarity=0.083 Sum_probs=97.2
Q ss_pred eeEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhccccCcEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCccccc
Q 015562 135 YLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYL 214 (404)
Q Consensus 135 ~~lvI~V~S~~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~DsY~ 214 (404)
+.+-|+|.+--.. ..|++|-.+-.. . ....+.+++|...+. +...+.+++..+++..+......+
T Consensus 75 p~vsViIP~yNE~----~~i~~~l~sll~----q-~yp~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~~~~--- 139 (444)
T PRK14583 75 PLVSILVPCFNEG----LNARETIHAALA----Q-TYTNIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIHLAH--- 139 (444)
T ss_pred CcEEEEEEeCCCH----HHHHHHHHHHHc----C-CCCCeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEEeCC---
Confidence 4555666654322 235555544321 1 122466655554332 233344544445565554433222
Q ss_pred chhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccCC---CccccCcccc-cC
Q 015562 215 ELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKG---VRYHEPEYWK-FG 290 (404)
Q Consensus 215 nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~---~Kwy~pe~~~-f~ 290 (404)
|.. |. ..++.+....+.+|++..|+|..+..+.|...++.....++ +|.+.+.+..++.. .+....++.. ++
T Consensus 140 n~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~--~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~ 215 (444)
T PRK14583 140 NQG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPR--TGAVTGNPRIRTRSTLIGRVQVGEFSSIIG 215 (444)
T ss_pred CCC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCC--eEEEEccceecCCCcchhhHHHHHHHHHHH
Confidence 222 32 35566666668999999999999999999888876533333 24433222222211 1111111000 00
Q ss_pred C--C-CC--CCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeeecC
Q 015562 291 E--A-GN--RYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDD 346 (404)
Q Consensus 291 d--~-~~--~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~id~ 346 (404)
. + .. .-+..++|.+.++.+++++.+---. +..-.||.-+|.-+...| +...++
T Consensus 216 ~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~---~~~i~ED~dl~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 216 LIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWS---PDMITEDIDISWKLQLKHWSVFFEPR 275 (444)
T ss_pred HHHHHHHHhCCceEecCceeEEEHHHHHHcCCCC---CCcccccHHHHHHHHHcCCeEEEeec
Confidence 0 0 00 0112357888999999988764322 122469999998886544 444443
No 34
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=85.18 E-value=5.1 Score=36.82 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=78.9
Q ss_pred cEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHH
Q 015562 173 GIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 252 (404)
Q Consensus 173 ~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~ 252 (404)
...+++|...+. +.....+ .+...+..+.... .+. ..|.. .+..+.+..+.+|++.+|+|+.+.++.|..
T Consensus 28 ~~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~-~~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~ 97 (235)
T cd06434 28 PLEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVIT-VPH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPE 97 (235)
T ss_pred CCEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEe-cCC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHH
Confidence 345666655443 2233333 3345555555543 111 12332 334444445899999999999999999988
Q ss_pred HHHhcCCCCCeEEEEeccCcccccC-CCcccc---Ccccc---c---CCCCCCCCCCCCCCceeeCHHHHHHHHHhccc-
Q 015562 253 TLVRHRSKPRVYIGCMKSGPVLNQK-GVRYHE---PEYWK---F---GEAGNRYFRHATGQLYAISKDLAAYISINQHV- 321 (404)
Q Consensus 253 ~L~~~~~~~~lYiG~~~~gpv~r~~-~~Kwy~---pe~~~---f---~d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~- 321 (404)
.+.... .+.+ |.+......... ...|.. ...+. . ......-...++|++.++.++++..+.-....
T Consensus 98 l~~~~~-~~~v--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~~~~~~ 174 (235)
T cd06434 98 MLKPFE-DPKV--GGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFT 174 (235)
T ss_pred HHHhcc-CCCE--eEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhhHHHhh
Confidence 887775 3432 222111000011 011100 00000 0 00000011235688888888888765432211
Q ss_pred ------cCCCCcchHHHHHHHhcCCCe
Q 015562 322 ------LHKYANEDVSLGSWFIGLDVE 342 (404)
Q Consensus 322 ------l~~~~~EDV~vG~~l~~L~v~ 342 (404)
.+....||..++.-+...|.+
T Consensus 175 ~~~~~~~~~~~~eD~~l~~~~~~~g~~ 201 (235)
T cd06434 175 NETFMGRRLNAGDDRFLTRYVLSHGYK 201 (235)
T ss_pred hhhhcCCCCCcCchHHHHHHHHHCCCe
Confidence 233467999998888655543
No 35
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=84.43 E-value=3.1 Score=37.34 Aligned_cols=116 Identities=14% Similarity=0.094 Sum_probs=66.8
Q ss_pred eEEEeCCceEecHHHHHHHHHhcCCCCCeEEEE--eccCcccccCCCccccCcc-c---c--cCCCCCCCCCCCCCCcee
Q 015562 235 FYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGC--MKSGPVLNQKGVRYHEPEY-W---K--FGEAGNRYFRHATGQLYA 306 (404)
Q Consensus 235 f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~--~~~gpv~r~~~~Kwy~pe~-~---~--f~d~~~~Yp~y~~G~gYv 306 (404)
|++-+|+|+.+..+-|.+.+.... .|++-++. .... ...+.-.++..-++ + . ........+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFR-NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEec-CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 688999999999999888887665 34322222 1110 00000011111111 0 0 000112346678899999
Q ss_pred eCHHHHHHHHHhccccCCCCcchHHHHHHHh--cCCCeeecCCCcccCCC
Q 015562 307 ISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHIDDRRLCCGTP 354 (404)
Q Consensus 307 LS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~id~~~f~~~~~ 354 (404)
+++++++.+.--. -..+..||..++.=+. |..+..+++....+..|
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p 126 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAP 126 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeCC
Confidence 9999999875222 1234579999988875 55677777765555444
No 36
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=84.37 E-value=30 Score=30.93 Aligned_cols=101 Identities=15% Similarity=0.086 Sum_probs=60.1
Q ss_pred HHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcC-CCCCeEEEEeccCcccccCCCccccCcccccCCCCCCCCCC
Q 015562 221 KIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHR-SKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRH 299 (404)
Q Consensus 221 l~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~-~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~f~d~~~~Yp~y 299 (404)
-.++++|. ..+.+|++..|||..+..+-|..++.... +...++.|.. +.. .+
T Consensus 69 n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~------------------~~~--~~------ 121 (202)
T cd04185 69 YEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLV------------------LDP--DG------ 121 (202)
T ss_pred HHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEeccee------------------EcC--CC------
Confidence 34566665 55889999999999999888777776553 1112221111 000 01
Q ss_pred CCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHh--cCCCeeecCCCccc
Q 015562 300 ATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHIDDRRLCC 351 (404)
Q Consensus 300 ~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~id~~~f~~ 351 (404)
.+++.++.+++++.+--...... ...||+.++.-+. |..+ ...+..+.+
T Consensus 122 -~~~~~~~~~~~~~~~g~~~~~~~-~~~eD~~~~~r~~~~G~~i-~~~~~~~~h 172 (202)
T cd04185 122 -SFVGVLISRRVVEKIGLPDKEFF-IWGDDTEYTLRASKAGPGI-YVPDAVVVH 172 (202)
T ss_pred -ceEEEEEeHHHHHHhCCCChhhh-ccchHHHHHHHHHHcCCcE-EecceEEEE
Confidence 34567899999987743222222 3469999988775 4445 444444433
No 37
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=83.44 E-value=1.8 Score=42.31 Aligned_cols=53 Identities=19% Similarity=0.124 Sum_probs=42.3
Q ss_pred CCCceeeCHHHHHHHHHhcc-c---cCCCCcchHHHHHHHhcCCCeeecCCCcccCC
Q 015562 301 TGQLYAISKDLAAYISINQH-V---LHKYANEDVSLGSWFIGLDVEHIDDRRLCCGT 353 (404)
Q Consensus 301 ~G~gYvLS~dla~~I~~~~~-~---l~~~~~EDV~vG~~l~~L~v~~id~~~f~~~~ 353 (404)
+|+|++||..||+.|..... . .+.+.--|--+..|+..++|....+++|+..+
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~D 68 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQMD 68 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeEe
Confidence 79999999999999998642 2 23334578899999998998888888888753
No 38
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=81.39 E-value=28 Score=31.98 Aligned_cols=118 Identities=15% Similarity=0.119 Sum_probs=64.6
Q ss_pred HHHHHHhc--CCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccCCCccccC------cccc-cCCCC
Q 015562 223 YFATAVSL--WDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEP------EYWK-FGEAG 293 (404)
Q Consensus 223 ~~~wa~~~--~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~p------e~~~-f~d~~ 293 (404)
.+.++.+. .+.+|++..|+|+.+.++.|..++.... .+. +|.+.+....++....++.+ ..+. .+.+.
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPR--VGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS 149 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCC--eeEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc
Confidence 45666553 2479999999999999999999887663 333 23321110111111111110 0000 00000
Q ss_pred -CC-CCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeeecC
Q 015562 294 -NR-YFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDD 346 (404)
Q Consensus 294 -~~-Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~id~ 346 (404)
.. --.++.|++.++++++...+---.. .+..||+-++.=+...| +...++
T Consensus 150 ~~~~~~~~~~g~~~~~rr~~~~~iGgf~~---~~~~eD~dl~~r~~~~G~~~~~~~~ 203 (236)
T cd06435 150 RNERNAIIQHGTMCLIRRSALDDVGGWDE---WCITEDSELGLRMHEAGYIGVYVAQ 203 (236)
T ss_pred ccccCceEEecceEEEEHHHHHHhCCCCC---ccccchHHHHHHHHHCCcEEEEcch
Confidence 00 0124678889999999998743222 23589999988776554 444443
No 39
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=81.23 E-value=32 Score=31.51 Aligned_cols=127 Identities=13% Similarity=0.013 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCcceEEEeCCceEecHHHHHHHH---HhcCCCCCe-EEEEeccCcccccCCCccccCccc---ccCC-CC
Q 015562 222 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTL---VRHRSKPRV-YIGCMKSGPVLNQKGVRYHEPEYW---KFGE-AG 293 (404)
Q Consensus 222 ~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L---~~~~~~~~l-YiG~~~~gpv~r~~~~Kwy~pe~~---~f~d-~~ 293 (404)
.+++.|... +++|++..|||+.+.++.|..++ ......+.+ .+|+.............+..+..+ .... ..
T Consensus 66 ~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (237)
T cd02526 66 IGIKAALEN-GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEG 144 (237)
T ss_pred HHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCC
Confidence 455554432 78999999999999999988885 323223332 223321000000000000000000 0000 00
Q ss_pred CCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeeecCCCcc
Q 015562 294 NRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDDRRLC 350 (404)
Q Consensus 294 ~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~id~~~f~ 350 (404)
..-..++.|++.++++++...+---...+ .+..||+.++.-+...| +..+.+....
T Consensus 145 ~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v~ 202 (237)
T cd02526 145 LKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVLK 202 (237)
T ss_pred ceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCcEEEEcCeEEE
Confidence 11123445778899999988875332222 13468999988885444 5454444443
No 40
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=80.87 E-value=9.8 Score=33.30 Aligned_cols=97 Identities=12% Similarity=0.044 Sum_probs=58.8
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccCCCccccCcccccCCCCCCCCCCCCC
Q 015562 223 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATG 302 (404)
Q Consensus 223 ~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~f~d~~~~Yp~y~~G 302 (404)
.++.+.+....+|++..|+|..+.++-|...++...+ .....|... +..+ . .-.....|
T Consensus 70 ~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~-~~~v~g~~~------------~~~~-------~-~~~~~~~~ 128 (182)
T cd06420 70 IRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEP-GVFLSGSRV------------LLNE-------K-LTERGIRG 128 (182)
T ss_pred HHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCC-CcEEeccee------------eccc-------c-cceeEecc
Confidence 3455555568899999999999999888888876622 122223211 0000 0 00023457
Q ss_pred CceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 015562 303 QLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD 340 (404)
Q Consensus 303 ~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~ 340 (404)
+.+++.+..+..+.--......+..||+-++.-+...|
T Consensus 129 ~~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 129 CNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred ceEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 77888888777544333333334579999988876555
No 41
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=79.73 E-value=62 Score=31.43 Aligned_cols=165 Identities=12% Similarity=0.099 Sum_probs=92.0
Q ss_pred cCcEEEEEEeeccCCCCChhHHHHHHHHhhcCCe-e-ecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHH
Q 015562 171 EKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDF-M-RLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIA 248 (404)
Q Consensus 171 ~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~Di-L-~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~ 248 (404)
...+.+++|-+.+. ......|.+-.+.++-+ + ..+.....-+.+ .+.+-+++....+|++..|.|+.+.++
T Consensus 32 ~~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 45677777766553 23345566666666555 2 222222122333 244555565699999999999999999
Q ss_pred HHHHHHH---hcCCCC-CeEEE-EeccCc-----ccccCCCcccc--CcccccCCCCCCCC-CCCCCCceeeCHHHHHHH
Q 015562 249 TLGQTLV---RHRSKP-RVYIG-CMKSGP-----VLNQKGVRYHE--PEYWKFGEAGNRYF-RHATGQLYAISKDLAAYI 315 (404)
Q Consensus 249 ~L~~~L~---~~~~~~-~lYiG-~~~~gp-----v~r~~~~Kwy~--pe~~~f~d~~~~Yp-~y~~G~gYvLS~dla~~I 315 (404)
.+...+. .....+ .++++ +..-.. ........|.. -+... ....+.+. ....|++.+++++.-..|
T Consensus 105 ~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~i~r~~f~~i 183 (281)
T PF10111_consen 105 FIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFI-SGKNSLWEFIAFASSCFLINREDFLEI 183 (281)
T ss_pred HHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHh-hccccccccccccceEEEEEHHHHHHh
Confidence 9999988 332222 33332 221110 10000001110 00000 00011221 233569999999998888
Q ss_pred HHhccccCCCCcchHHHHHHHhcCCCee
Q 015562 316 SINQHVLHKYANEDVSLGSWFIGLDVEH 343 (404)
Q Consensus 316 ~~~~~~l~~~~~EDV~vG~~l~~L~v~~ 343 (404)
---......+..||.-++.=+...+...
T Consensus 184 GGfDE~f~G~G~ED~D~~~RL~~~~~~~ 211 (281)
T PF10111_consen 184 GGFDERFRGWGYEDIDFGYRLKKAGYKF 211 (281)
T ss_pred CCCCccccCCCcchHHHHHHHHHcCCcE
Confidence 7766666677899999998887666444
No 42
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=79.17 E-value=13 Score=32.47 Aligned_cols=136 Identities=9% Similarity=-0.022 Sum_probs=70.2
Q ss_pred cEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHH
Q 015562 173 GIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 252 (404)
Q Consensus 173 ~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~ 252 (404)
...++.+-..+. +.....+..-..++..+..+...+... .-..+..+.+....+|++..|+|..+.++.|.+
T Consensus 28 ~~eiivvd~~s~---d~~~~~~~~~~~~~~~~~~~~~~~n~G-----~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~ 99 (185)
T cd04179 28 DYEIIVVDDGST---DGTAEIARELAARVPRVRVIRLSRNFG-----KGAAVRAGFKAARGDIVVTMDADLQHPPEDIPK 99 (185)
T ss_pred CEEEEEEcCCCC---CChHHHHHHHHHhCCCeEEEEccCCCC-----ccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 445555554443 234444554455565554444443332 113455555555669999999999999999988
Q ss_pred HHHh-cCCCCCeEEEEecc-CcccccC-CCccccCc-ccccCCCCCCCCCCCCCCceeeCHHHHHHHH
Q 015562 253 TLVR-HRSKPRVYIGCMKS-GPVLNQK-GVRYHEPE-YWKFGEAGNRYFRHATGQLYAISKDLAAYIS 316 (404)
Q Consensus 253 ~L~~-~~~~~~lYiG~~~~-gpv~r~~-~~Kwy~pe-~~~f~d~~~~Yp~y~~G~gYvLS~dla~~I~ 316 (404)
++.. ......+..|.... ......+ ..++.... .+.+..-...-.....|+.+++++++++.|.
T Consensus 100 l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 100 LLEKLLEGGADVVIGSRFVRGGGAGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHHhccCCcEEEEEeecCCCcccchHHHHHHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHHH
Confidence 8886 33445565565321 1000000 00000000 0000000011123356788899999999985
No 43
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=75.44 E-value=49 Score=33.61 Aligned_cols=164 Identities=16% Similarity=0.093 Sum_probs=93.6
Q ss_pred EEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHH
Q 015562 174 IIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQT 253 (404)
Q Consensus 174 v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~ 253 (404)
..+..|...+ .+..-+.+.+-..++++.+...+.+ .+...| ...+.++....+.++++..|-|+.+..+.|.+.
T Consensus 85 ~evivv~d~~---~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~gK-~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~ 158 (439)
T COG1215 85 YEVIVVDDGS---TDETYEILEELGAEYGPNFRVIYPE--KKNGGK-AGALNNGLKRAKGDVVVILDADTVPEPDALREL 158 (439)
T ss_pred ceEEEECCCC---ChhHHHHHHHHHhhcCcceEEEecc--ccCccc-hHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHH
Confidence 5666666533 2345555555556665344443220 111222 346677777667999999999999999999999
Q ss_pred HHhcCCCCCe-EEEEec--cCcccccCCCccccCcc-------cccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccC
Q 015562 254 LVRHRSKPRV-YIGCMK--SGPVLNQKGVRYHEPEY-------WKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLH 323 (404)
Q Consensus 254 L~~~~~~~~l-YiG~~~--~gpv~r~~~~Kwy~pe~-------~~f~d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~ 323 (404)
+......+.. +.|... .++.....-.+-..-++ +... ........+.|...++-+++++.+-. ...
T Consensus 159 ~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~G~~~~~rr~aL~~~g~---~~~ 234 (439)
T COG1215 159 VSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAA-SKGGLISFLSGSSSAFRRSALEEVGG---WLE 234 (439)
T ss_pred HhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhh-hhcCCeEEEcceeeeEEHHHHHHhCC---CCC
Confidence 9887544333 233221 00000000000000000 0000 11235677899999999999998772 222
Q ss_pred CCCcchHHHHHHHh--cCCCeeecCC
Q 015562 324 KYANEDVSLGSWFI--GLDVEHIDDR 347 (404)
Q Consensus 324 ~~~~EDV~vG~~l~--~L~v~~id~~ 347 (404)
..--||..++..+. |..+..+++.
T Consensus 235 ~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 235 DTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred CceeccHHHHHHHHHCCCeEEEeecc
Confidence 33469999999996 4556666555
No 44
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=74.44 E-value=60 Score=32.49 Aligned_cols=135 Identities=8% Similarity=0.033 Sum_probs=69.9
Q ss_pred CcEEEEEEeeccCCCCChhHHHHHHHHhhcCC-eeecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHH
Q 015562 172 KGIIMRFVIGHSATSGGILDRAIEAEDRKHGD-FMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATL 250 (404)
Q Consensus 172 ~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~D-iL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L 250 (404)
..+.+++|-..|. |+. ...+++-.+.+++ ++......++. |. .++..+.+..+.+|++.+|+|.-.+++.+
T Consensus 37 ~~~EIIvVDDgS~--D~T-~~il~~~~~~~~~~v~~i~~~~n~G----~~-~A~~~G~~~A~gd~vv~~DaD~q~~p~~i 108 (325)
T PRK10714 37 KEYEILLIDDGSS--DNS-AEMLVEAAQAPDSHIVAILLNRNYG----QH-SAIMAGFSHVTGDLIITLDADLQNPPEEI 108 (325)
T ss_pred CCEEEEEEeCCCC--CcH-HHHHHHHHhhcCCcEEEEEeCCCCC----HH-HHHHHHHHhCCCCEEEEECCCCCCCHHHH
Confidence 4577888876664 222 2233332333444 33333333332 11 12333444457899999999999999999
Q ss_pred HHHHHhcCCCCCeEEEEecc--CcccccCCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHH
Q 015562 251 GQTLVRHRSKPRVYIGCMKS--GPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISI 317 (404)
Q Consensus 251 ~~~L~~~~~~~~lYiG~~~~--gpv~r~~~~Kwy~pe~~~f~d~~~~Yp~y~~G~gYvLS~dla~~I~~ 317 (404)
.++++.......+..|.... .+..+.-.++.+.--...+ .+..++.+.+| .-++++++++.+..
T Consensus 109 ~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~--~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 109 PRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRT--TGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHH--cCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 88887764333444444321 2222222222221100011 12344444333 35899999999864
No 45
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=74.16 E-value=14 Score=37.64 Aligned_cols=82 Identities=13% Similarity=0.199 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCcceEEEeCCceEecHH---HHHHHHHhcCCCCCeEEEEeccCcccccCCCccc---cCcccccCCCCCC
Q 015562 222 IYFATAVSLWDADFYVKVDDDVHVNIA---TLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYH---EPEYWKFGEAGNR 295 (404)
Q Consensus 222 ~~~~wa~~~~~a~f~lKvDDDvfVn~~---~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy---~pe~~~f~d~~~~ 295 (404)
.++.|+....++++++.+|||..+.++ -+.+.|......++++.-+-.+ +.+.+.. .|+.+|+.
T Consensus 87 ~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~N-----dnG~~~~~~~~~~~lyrs----- 156 (334)
T cd02514 87 WALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWN-----DNGKEHFVDDTPSLLYRT----- 156 (334)
T ss_pred HHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeec-----cCCcccccCCCcceEEEe-----
Confidence 467776665589999999999999998 4466666655566654322111 1111111 14444432
Q ss_pred CCCCCCCCceeeCHHHHHHH
Q 015562 296 YFRHATGQLYAISKDLAAYI 315 (404)
Q Consensus 296 Yp~y~~G~gYvLS~dla~~I 315 (404)
.|+.|.|+++.+++-..+
T Consensus 157 --~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 157 --DFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred --cCCCchHHHHHHHHHHHh
Confidence 356799999999998887
No 46
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=74.05 E-value=64 Score=31.19 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=68.3
Q ss_pred chhHHHHHHHHHHHhc-CCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccCCC---ccc-------c
Q 015562 215 ELSAKTKIYFATAVSL-WDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGV---RYH-------E 283 (404)
Q Consensus 215 nLt~Ktl~~~~wa~~~-~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~---Kwy-------~ 283 (404)
|.-.|+-..-...... .+.+|++-.|-|+.+.++-|...+......|+ +|-+.......+..+ ++. .
T Consensus 77 ~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~~~~~~~~~~ 154 (254)
T cd04191 77 NTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARLQQFANRLYG 154 (254)
T ss_pred CCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHHHHHHHHHHH
Confidence 3344554433333222 47899999999999999999998877643344 243321111111111 110 0
Q ss_pred C------cccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhcc-----cc-CCCCcchHHHHHHHhcCC--Ceeec
Q 015562 284 P------EYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQH-----VL-HKYANEDVSLGSWFIGLD--VEHID 345 (404)
Q Consensus 284 p------e~~~f~d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~-----~l-~~~~~EDV~vG~~l~~L~--v~~id 345 (404)
| ..|. ..-.+|.|...++.++++..+..... -+ ...-.||..+|..+...| +...+
T Consensus 155 ~~~~~~~~~~~------~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~ 224 (254)
T cd04191 155 PVFGRGLAAWQ------GGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAP 224 (254)
T ss_pred HHHHHHHHHhc------CCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEcc
Confidence 0 0011 11235679999999998877543211 11 123479999999986544 44443
No 47
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=73.60 E-value=23 Score=34.76 Aligned_cols=136 Identities=12% Similarity=0.036 Sum_probs=74.3
Q ss_pred cCCeeecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeE-EEEe-c--cCcc---
Q 015562 201 HGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVY-IGCM-K--SGPV--- 273 (404)
Q Consensus 201 ~~DiL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lY-iG~~-~--~gpv--- 273 (404)
+.++..+...++.- ...=.-.+++.|....+. |++-.++|+.+.++.|.++|+.....+... .|.. . .++.
T Consensus 55 ~~~v~~i~~~~NlG-~agg~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLG-FAGGFNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCcc-chhhhhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 67777765444221 011111456666543222 999999999999999999998875544333 2332 1 1111
Q ss_pred ccc-----CCCcc-ccCcccccCC--CCCCCCCCCCCCceeeCHHHHHHHHHhccccCC-CCcchHHHHHHHhcCC
Q 015562 274 LNQ-----KGVRY-HEPEYWKFGE--AGNRYFRHATGQLYAISKDLAAYISINQHVLHK-YANEDVSLGSWFIGLD 340 (404)
Q Consensus 274 ~r~-----~~~Kw-y~pe~~~f~d--~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~-~~~EDV~vG~~l~~L~ 340 (404)
.+. ....| +.+..-.-.+ +...+..+++|++.++++++.+.+---.. .. +..||+-++.=+...|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de--~~F~y~eD~D~~~R~~~~G 206 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDE--RFFIYYEDVDLCLRARKAG 206 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCCCc--ccceeehHHHHHHHHHHcC
Confidence 000 00111 1111000000 01122225789999999999999876222 33 3689999988886555
No 48
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=68.95 E-value=39 Score=30.46 Aligned_cols=107 Identities=13% Similarity=0.041 Sum_probs=59.1
Q ss_pred HHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEec----c-CcccccCCCccccCcccccCCCCCCCCC
Q 015562 224 FATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMK----S-GPVLNQKGVRYHEPEYWKFGEAGNRYFR 298 (404)
Q Consensus 224 ~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~----~-gpv~r~~~~Kwy~pe~~~f~d~~~~Yp~ 298 (404)
+..+......+|++.+|+|..+.++.|.+++...... ...+|... . +...+....++..... ....+
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 135 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRAD-GAVAGAFRLRFDDPGPRLRLLELGANLRSR-------LFGLP 135 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcC-CcEEEEEEeeecCCccchhhhhhcccceec-------ccCCC
Confidence 3445554568999999999999998888876655433 33344421 1 1110000011111110 01111
Q ss_pred CCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCe
Q 015562 299 HATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 342 (404)
Q Consensus 299 y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 342 (404)
.++.+.++++++...+-.-.... ..||.-++.=+...|-.
T Consensus 136 -~~~~~~~~r~~~~~~~G~fd~~~---~~ED~d~~~r~~~~G~~ 175 (221)
T cd02522 136 -YGDQGLFIRRELFEELGGFPELP---LMEDVELVRRLRRRGRP 175 (221)
T ss_pred -cCCceEEEEHHHHHHhCCCCccc---cccHHHHHHHHHhCCCE
Confidence 24567889999887765433222 68999887777655533
No 49
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=68.86 E-value=95 Score=28.48 Aligned_cols=120 Identities=14% Similarity=0.086 Sum_probs=61.6
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccCCCcccc-----Cccccc-----CCC
Q 015562 223 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHE-----PEYWKF-----GEA 292 (404)
Q Consensus 223 ~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~-----pe~~~f-----~d~ 292 (404)
.++.+.+..+.+|++.+|.|+.+.++.|...+... ..+. +|++.+.....++...|.. +..+.+ +..
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~-~~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhh-cCCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 34556665689999999999999999988855433 2333 2333211111111111110 000000 000
Q ss_pred CCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeeecCCC
Q 015562 293 GNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDDRR 348 (404)
Q Consensus 293 ~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~id~~~ 348 (404)
.......+.|++-++.+++...+---.. ....||+.++.-+...| +..+++..
T Consensus 155 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~ED~~l~~rl~~~G~~~~~~~~~~ 209 (232)
T cd06437 155 STGLFFNFNGTAGVWRKECIEDAGGWNH---DTLTEDLDLSYRAQLKGWKFVYLDDVV 209 (232)
T ss_pred hcCCeEEeccchhhhhHHHHHHhCCCCC---CcchhhHHHHHHHHHCCCeEEEeccce
Confidence 0111112356666788888877632111 23479999988886444 44444433
No 50
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=61.61 E-value=97 Score=34.68 Aligned_cols=136 Identities=16% Similarity=0.143 Sum_probs=74.4
Q ss_pred chhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCCe-EEEEec---c-CcccccCCCccccCc-c-c
Q 015562 215 ELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRV-YIGCMK---S-GPVLNQKGVRYHEPE-Y-W 287 (404)
Q Consensus 215 nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~l-YiG~~~---~-gpv~r~~~~Kwy~pe-~-~ 287 (404)
|...|.- .++.+.+..+.+|++..|.|+.+..+.|.+.+......+++ .+++.. + .+..++-......|. . .
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 3334533 35667777789999999999999999988887665334443 112110 1 111111000000110 0 0
Q ss_pred ccCC--CCC--CCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeeecCCCcccCCC
Q 015562 288 KFGE--AGN--RYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDDRRLCCGTP 354 (404)
Q Consensus 288 ~f~d--~~~--~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~id~~~f~~~~~ 354 (404)
.++. ++. .-..++.|++.++.+++...+---.. ..-.||..++.-+...| +..+++.......|
T Consensus 291 f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~---~~vtED~~l~~rL~~~G~~~~y~~~~~~~g~~p 360 (713)
T TIGR03030 291 FYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAG---ETVTEDAETALKLHRRGWNSAYLDRPLIAGLAP 360 (713)
T ss_pred HHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCC---CCcCcHHHHHHHHHHcCCeEEEeccccccccCC
Confidence 0000 000 01235678999999999988642211 12379999999886554 55666665544433
No 51
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=61.22 E-value=1.2e+02 Score=27.15 Aligned_cols=91 Identities=12% Similarity=0.051 Sum_probs=51.0
Q ss_pred HHHHHhcCCcceEEEeCCceEecHHHHHHHHHh-cCCCCCeEEEEec-cCcccccCCCccc---cC--cccccCCCCCCC
Q 015562 224 FATAVSLWDADFYVKVDDDVHVNIATLGQTLVR-HRSKPRVYIGCMK-SGPVLNQKGVRYH---EP--EYWKFGEAGNRY 296 (404)
Q Consensus 224 ~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~-~~~~~~lYiG~~~-~gpv~r~~~~Kwy---~p--e~~~f~d~~~~Y 296 (404)
++.+.+....+|++.+|+|..+.++.|..++.. ..+...+..|... ..... ... .++ .+ ..+........-
T Consensus 70 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~ 147 (224)
T cd06442 70 YIEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGW-GLKRKLISRGANLLARLLLGRK 147 (224)
T ss_pred HHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCC-cHHHHHHHHHHHHHHHHHcCCC
Confidence 333444445699999999999999988888886 3445566656432 11111 000 000 00 000000000112
Q ss_pred CCCCCCCceeeCHHHHHHHH
Q 015562 297 FRHATGQLYAISKDLAAYIS 316 (404)
Q Consensus 297 p~y~~G~gYvLS~dla~~I~ 316 (404)
.++++|++.+++++++..+.
T Consensus 148 ~~~~~~~~~~~~r~~~~~ig 167 (224)
T cd06442 148 VSDPTSGFRAYRREVLEKLI 167 (224)
T ss_pred CCCCCCccchhhHHHHHHHh
Confidence 34578888899999999987
No 52
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=59.60 E-value=1.3e+02 Score=31.90 Aligned_cols=86 Identities=10% Similarity=0.136 Sum_probs=43.3
Q ss_pred HHHHHHHHh----cCCcceEEEeCCceEecHHHHHHHHHhc---CCCCCeEEEEeccCcccccCCCccc----cCccccc
Q 015562 221 KIYFATAVS----LWDADFYVKVDDDVHVNIATLGQTLVRH---RSKPRVYIGCMKSGPVLNQKGVRYH----EPEYWKF 289 (404)
Q Consensus 221 l~~~~wa~~----~~~a~f~lKvDDDvfVn~~~L~~~L~~~---~~~~~lYiG~~~~gpv~r~~~~Kwy----~pe~~~f 289 (404)
-.=++||.. ..+++.++.+.||.-+-++=+.-+.... ...+.+|.-.-.+ +.+...+ .|+..|.
T Consensus 176 A~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawN-----dnG~~~~~~~~~~~~lyR 250 (434)
T PF03071_consen 176 ARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWN-----DNGKEHFVDDSRPSLLYR 250 (434)
T ss_dssp HHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES-------TT-BGGGS-TT-TT-EEE
T ss_pred HHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEccc-----cCCccccccCCCccceEe
Confidence 334555543 3478899999999999887554433332 2345666322221 1111111 1333443
Q ss_pred CCCCCCCCCCCCCCceeeCHHHHHHHHHh
Q 015562 290 GEAGNRYFRHATGQLYAISKDLAAYISIN 318 (404)
Q Consensus 290 ~d~~~~Yp~y~~G~gYvLS~dla~~I~~~ 318 (404)
.| |..|-|++|++++=..+...
T Consensus 251 sd-------ffpglGWml~r~~w~el~~~ 272 (434)
T PF03071_consen 251 SD-------FFPGLGWMLTRELWDELEPK 272 (434)
T ss_dssp ES-------S---SSEEEEHHHHHHHGGG
T ss_pred cc-------cCCchHHHhhHHHHHhhccc
Confidence 22 34589999999999876643
No 53
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=57.18 E-value=17 Score=34.32 Aligned_cols=114 Identities=15% Similarity=0.083 Sum_probs=61.6
Q ss_pred cCCcceEEEeCCceEecHHHHHHHHHhcCCCCCe--EEEEecc-Cc---cc-ccCCCccccCcc-cccCCCCCCCCCCCC
Q 015562 230 LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRV--YIGCMKS-GP---VL-NQKGVRYHEPEY-WKFGEAGNRYFRHAT 301 (404)
Q Consensus 230 ~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~l--YiG~~~~-gp---v~-r~~~~Kwy~pe~-~~f~d~~~~Yp~y~~ 301 (404)
..+.+|++.+|.|+.+..+.|..++......|++ ..|.+.. ++ .+ +-..--|..... .......-.+...+.
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~ 150 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLP 150 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECC
Confidence 3489999999999999999988888766434443 2233211 10 00 000000000000 000001123455678
Q ss_pred CCceeeCHHHHHHHHHhccc----------cC-------CCCcchHHHHHHHhcCC--Cee
Q 015562 302 GQLYAISKDLAAYISINQHV----------LH-------KYANEDVSLGSWFIGLD--VEH 343 (404)
Q Consensus 302 G~gYvLS~dla~~I~~~~~~----------l~-------~~~~EDV~vG~~l~~L~--v~~ 343 (404)
|+++++.+++++.+...... +. ....||..++..+...+ +..
T Consensus 151 G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~ 211 (244)
T cd04190 151 GCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKY 211 (244)
T ss_pred CceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEE
Confidence 99999999988775322110 00 12479999988885444 444
No 54
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=54.90 E-value=50 Score=31.61 Aligned_cols=36 Identities=11% Similarity=-0.038 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcC
Q 015562 222 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHR 258 (404)
Q Consensus 222 ~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~ 258 (404)
.++++|.+ .+++|++..|||+.+..+.|..+++...
T Consensus 64 ~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 99 (281)
T TIGR01556 64 QGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLS 99 (281)
T ss_pred HHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 35666654 3789999999999999888887776543
No 55
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=54.16 E-value=2.7e+02 Score=28.93 Aligned_cols=126 Identities=10% Similarity=0.138 Sum_probs=67.1
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeE--EEEeccCc-ccccCCCc--cccCc--------cccc
Q 015562 223 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVY--IGCMKSGP-VLNQKGVR--YHEPE--------YWKF 289 (404)
Q Consensus 223 ~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lY--iG~~~~gp-v~r~~~~K--wy~pe--------~~~f 289 (404)
+++++.+..+.+|++..|+|..+.++.|.+.+......+.+- .|.+...+ ........ +...+ .+..
T Consensus 122 AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~ 201 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFLA 201 (439)
T ss_pred HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHHh
Confidence 566677767899999999999999999998887764334332 23332111 00000000 01110 0000
Q ss_pred CC---CCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHh---cCCCeeecCCCccc
Q 015562 290 GE---AGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFI---GLDVEHIDDRRLCC 351 (404)
Q Consensus 290 ~d---~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~---~L~v~~id~~~f~~ 351 (404)
+. .....+..++|++.++.++++..+.--. ...-.||..++.-+. +-.+....+..+..
T Consensus 202 ~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~---~~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~~ 266 (439)
T TIGR03111 202 GRNFESQVNSLFTLSGAFSAFRRETILKTQLYN---SETVGEDTDMTFQIRELLDGKVYLCENAIFYV 266 (439)
T ss_pred hhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCC---CCCcCccHHHHHHHHHhcCCeEEECCCCEEEE
Confidence 00 0001122357888888998887653211 122389999986553 33444445554444
No 56
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=51.20 E-value=1.5e+02 Score=26.68 Aligned_cols=89 Identities=13% Similarity=0.004 Sum_probs=52.2
Q ss_pred CcEEEEEEeeccCCCCChhHHHHHHHHhhcCCe-eecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHH
Q 015562 172 KGIIMRFVIGHSATSGGILDRAIEAEDRKHGDF-MRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATL 250 (404)
Q Consensus 172 ~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~Di-L~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L 250 (404)
..+.++.|-+.|.+ .....+.+..++++.. ..+...... ... .++..+.+....+|++.+|+|..+.++.|
T Consensus 29 ~~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~i~~~~n~-G~~----~a~~~g~~~a~gd~i~~ld~D~~~~~~~l 100 (211)
T cd04188 29 FSYEIIVVDDGSKD---GTAEVARKLARKNPALIRVLTLPKNR-GKG----GAVRAGMLAARGDYILFADADLATPFEEL 100 (211)
T ss_pred CCEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEEEEcccCC-CcH----HHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence 35667766665542 3334455445556654 222222221 111 23344444446799999999999999999
Q ss_pred HHHHHh-cCCCCCeEEEEe
Q 015562 251 GQTLVR-HRSKPRVYIGCM 268 (404)
Q Consensus 251 ~~~L~~-~~~~~~lYiG~~ 268 (404)
..++.. ......+.+|..
T Consensus 101 ~~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 101 EKLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHHHHhccCCcEEEEEe
Confidence 988886 333446667763
No 57
>PHA01631 hypothetical protein
Probab=50.53 E-value=39 Score=31.16 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=42.0
Q ss_pred CCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccCCCccccCcccccCCCCCCCCCCCCCCceeeCHH
Q 015562 231 WDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKD 310 (404)
Q Consensus 231 ~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~f~d~~~~Yp~y~~G~gYvLS~d 310 (404)
-+-|.++.+|.|++|+.-. .. .+++.++.=|... + .| +.+.+-+||.|.-|++.+.
T Consensus 70 i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~CiPA---~----~k-----------p~~~v~~FC~sTNf~~pr~ 125 (176)
T PHA01631 70 IEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCYWL---Y----YD-----------WANEIRPFCSGTNYIFRKS 125 (176)
T ss_pred CCccEEEEeccceEecCcc--cc----ccCCCccceeeee---e----ec-----------CCCcEEEEEccccEEeeHH
Confidence 5778888999999998542 11 1333444445321 1 01 2235558999999999999
Q ss_pred HHHHHHHh
Q 015562 311 LAAYISIN 318 (404)
Q Consensus 311 la~~I~~~ 318 (404)
.+.++...
T Consensus 126 ~l~~l~~v 133 (176)
T PHA01631 126 LLPYLEYT 133 (176)
T ss_pred HhHHHHHH
Confidence 99988753
No 58
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=47.92 E-value=1.4e+02 Score=23.84 Aligned_cols=82 Identities=12% Similarity=0.063 Sum_probs=49.2
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCCe-EEEEeccCcccccCCCccccCcccccCCCCCCCCCCCC
Q 015562 223 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRV-YIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHAT 301 (404)
Q Consensus 223 ~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~l-YiG~~~~gpv~r~~~~Kwy~pe~~~f~d~~~~Yp~y~~ 301 (404)
.+..+....+.+|++.+|+|..+.++.+...+......+.. .+++ +
T Consensus 68 ~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~------------------------------~--- 114 (156)
T cd00761 68 ARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGG------------------------------P--- 114 (156)
T ss_pred HHHHHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEec------------------------------c---
Confidence 44445554489999999999999998888864433222211 1111 0
Q ss_pred CCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcC
Q 015562 302 GQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGL 339 (404)
Q Consensus 302 G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L 339 (404)
++++++++..+.+......... ..||..++..+...
T Consensus 115 -~~~~~~~~~~~~~~~~~~~~~~-~~ed~~~~~~~~~~ 150 (156)
T cd00761 115 -GNLLFRRELLEEIGGFDEALLS-GEEDDDFLLRLLRG 150 (156)
T ss_pred -chheeeHHHHHHhCCcchHhcC-CcchHHHHHHHHhh
Confidence 6677888877776543332221 26777776666433
No 59
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=45.33 E-value=2.6e+02 Score=26.02 Aligned_cols=155 Identities=13% Similarity=0.108 Sum_probs=78.9
Q ss_pred cEEEEEEeeccCCCCChhHHHHHHHHhhcCC--eeecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHH
Q 015562 173 GIIMRFVIGHSATSGGILDRAIEAEDRKHGD--FMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATL 250 (404)
Q Consensus 173 ~v~v~FviG~s~~~~~~~~~~L~~E~~~~~D--iL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L 250 (404)
.+.+++|-..|. + .....+.+-.++|++ +......... ... ..+..+......+|++.+|+|..++++.|
T Consensus 40 ~~eiivvDdgS~--D-~t~~i~~~~~~~~~~~~v~~~~~~~n~-G~~----~a~n~g~~~a~g~~i~~lD~D~~~~~~~l 111 (243)
T PLN02726 40 DFEIIVVDDGSP--D-GTQDVVKQLQKVYGEDRILLRPRPGKL-GLG----TAYIHGLKHASGDFVVIMDADLSHHPKYL 111 (243)
T ss_pred CeEEEEEeCCCC--C-CHHHHHHHHHHhcCCCcEEEEecCCCC-CHH----HHHHHHHHHcCCCEEEEEcCCCCCCHHHH
Confidence 567777766554 2 233334443345543 2222222211 111 24444555457899999999999999988
Q ss_pred HHHHHhcC-CCCCeEEEEec--cCcccccCCCccc---cCc------ccccCCCCCCCCCCCCCCceeeCHHHHHHHHHh
Q 015562 251 GQTLVRHR-SKPRVYIGCMK--SGPVLNQKGVRYH---EPE------YWKFGEAGNRYFRHATGQLYAISKDLAAYISIN 318 (404)
Q Consensus 251 ~~~L~~~~-~~~~lYiG~~~--~gpv~r~~~~Kwy---~pe------~~~f~d~~~~Yp~y~~G~gYvLS~dla~~I~~~ 318 (404)
..++.... ....+..|... .+.. .+..|+ .+. .+.+ +.. -+...|++.++++++++.|...
T Consensus 112 ~~l~~~~~~~~~~~v~g~r~~~~~~~---~~~~~~r~~~~~~~~~~~~~~~---~~~-~~d~~g~~~~~rr~~~~~i~~~ 184 (243)
T PLN02726 112 PSFIKKQRETGADIVTGTRYVKGGGV---HGWDLRRKLTSRGANVLAQTLL---WPG-VSDLTGSFRLYKRSALEDLVSS 184 (243)
T ss_pred HHHHHHHHhcCCcEEEEccccCCCCc---CCccHHHHHHHHHHHHHHHHHh---CCC-CCcCCCcccceeHHHHHHHHhh
Confidence 88886653 23456556532 1100 000111 100 0111 111 1235788889999999998653
Q ss_pred ccccCCCCcchHHHHHHH--hcCCCeee
Q 015562 319 QHVLHKYANEDVSLGSWF--IGLDVEHI 344 (404)
Q Consensus 319 ~~~l~~~~~EDV~vG~~l--~~L~v~~i 344 (404)
.... .| .+|+-+...+ .|..+..+
T Consensus 185 ~~~~-~~-~~~~el~~~~~~~g~~i~~v 210 (243)
T PLN02726 185 VVSK-GY-VFQMEIIVRASRKGYRIEEV 210 (243)
T ss_pred ccCC-Cc-EEehHHHHHHHHcCCcEEEe
Confidence 3221 22 2345454444 45555544
No 60
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=44.98 E-value=4.6e+02 Score=29.48 Aligned_cols=197 Identities=14% Similarity=0.065 Sum_probs=101.4
Q ss_pred CCCeeEEEEEECCCCCHH-HHHHHHHHHHhhhhhhhhccccCcEEEEEEeeccCCCCChh--HHHHHHHHhhcC---Cee
Q 015562 132 KRRYLMVVGINTAFSSRK-RRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGIL--DRAIEAEDRKHG---DFM 205 (404)
Q Consensus 132 ~~~~~lvI~V~S~~~~~~-rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~--~~~L~~E~~~~~---DiL 205 (404)
.....+.|.|.+.-...+ -+..|+.+..+-.. ......+.+ ||+..+.+++-.. ..++.+=.++|+ .|.
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~ 195 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIF 195 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEE
Confidence 344566666666544443 34778888876421 111234555 8887654321100 011122233343 233
Q ss_pred ecCCcccccchhHHHHHHHHHHHh-cCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccCCCcccc-
Q 015562 206 RLDHVEGYLELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHE- 283 (404)
Q Consensus 206 ~ld~~DsY~nLt~Ktl~~~~wa~~-~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~- 283 (404)
... .-.|.-.|.-..-.+... ..+++|++-.|-|+.+..+.|.+++......|+ +|-+...+...+..+ ++.
T Consensus 196 yr~---R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~s-lfaR 269 (691)
T PRK05454 196 YRR---RRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADT-LFAR 269 (691)
T ss_pred EEE---CCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCC-HHHH
Confidence 222 223334565544444333 246799999999999999999999876533444 355433222222211 110
Q ss_pred ----------C------cccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhcccc-------CCCCcchHHHHHHHhc--
Q 015562 284 ----------P------EYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVL-------HKYANEDVSLGSWFIG-- 338 (404)
Q Consensus 284 ----------p------e~~~f~d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l-------~~~~~EDV~vG~~l~~-- 338 (404)
| ..|..+ .+ ...|...|+.++....+..- +.+ ...--||...|..+..
T Consensus 270 ~qqf~~~~y~~~~~~G~~~w~~~-~g-----~f~G~naIiR~~af~~~~gl-p~L~g~~p~~~~~LseD~~~a~~l~~~G 342 (691)
T PRK05454 270 LQQFATRVYGPLFAAGLAWWQGG-EG-----NYWGHNAIIRVKAFAEHCGL-PPLPGRGPFGGHILSHDFVEAALMRRAG 342 (691)
T ss_pred HHHHHHHHHHHHHHhhhhhhccC-cc-----ccccceEEEEHHHHHHhcCC-ccccccCCCCCCcccHHHHHHHHHHHCC
Confidence 0 011101 01 12466678888877665311 111 1234689999999964
Q ss_pred CCCeeecC
Q 015562 339 LDVEHIDD 346 (404)
Q Consensus 339 L~v~~id~ 346 (404)
-.|..+++
T Consensus 343 yrV~~~pd 350 (691)
T PRK05454 343 WGVWLAPD 350 (691)
T ss_pred CEEEEcCc
Confidence 45666666
No 61
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=43.04 E-value=2.7e+02 Score=25.69 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=66.4
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCC-CCe-EEEE-eccCcccccCCCccccCcccc-cC-----CCC
Q 015562 223 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSK-PRV-YIGC-MKSGPVLNQKGVRYHEPEYWK-FG-----EAG 293 (404)
Q Consensus 223 ~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~-~~l-YiG~-~~~gpv~r~~~~Kwy~pe~~~-f~-----d~~ 293 (404)
.++.+.+....+|++.+|+|+.+.++.|.+.+...... +.+ ++|. +...........+.+..+.+. +. -..
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLAR 154 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556665678999999999999999999888766422 333 2222 110000000000111000000 00 000
Q ss_pred CCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeeecC
Q 015562 294 NRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDD 346 (404)
Q Consensus 294 ~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~id~ 346 (404)
...+..++|++.++++++.+.+.--.. ....||..++.=+...| +..++.
T Consensus 155 ~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r~~~~~~ 206 (241)
T cd06427 155 LGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYRTGVLNS 206 (241)
T ss_pred cCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCceEEEecc
Confidence 123334678899999999988754222 12479999988875444 444433
No 62
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=42.94 E-value=31 Score=21.48 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=15.4
Q ss_pred HHhhhhhHHHHHHHHHHHH
Q 015562 90 IQTLDKTISNLEMELAAAR 108 (404)
Q Consensus 90 ~~~~~~~i~~le~~l~~~~ 108 (404)
+..+..+|++||.+|+..+
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4567888999999998765
No 63
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=42.41 E-value=2.6e+02 Score=25.25 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=32.0
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEE
Q 015562 223 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGC 267 (404)
Q Consensus 223 ~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~ 267 (404)
....+.+....+|++.+|+|..+.++.|...+......+...+|+
T Consensus 75 a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 75 AKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 344555556889999999999999988877665553334445565
No 64
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=40.98 E-value=1.1e+02 Score=30.73 Aligned_cols=81 Identities=12% Similarity=0.091 Sum_probs=59.3
Q ss_pred ccCcEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCc--ccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecH
Q 015562 170 EEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHV--EGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNI 247 (404)
Q Consensus 170 ~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~--DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~ 247 (404)
...++.+.|+-|.+ ..++.|..=.....-++.+++. +.+..-+.-...+..|+.+.++.++++..|-|+|.-.
T Consensus 35 s~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~ 109 (346)
T COG4092 35 SSDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSS 109 (346)
T ss_pred ccccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccH
Confidence 35567777777665 3566666666666667777754 3444444555567788888789999999999999999
Q ss_pred HHHHHHHH
Q 015562 248 ATLGQTLV 255 (404)
Q Consensus 248 ~~L~~~L~ 255 (404)
++..++|.
T Consensus 110 dnF~k~l~ 117 (346)
T COG4092 110 DNFAKMLS 117 (346)
T ss_pred HHHHHHHH
Confidence 99999883
No 65
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=40.15 E-value=3.9e+02 Score=26.56 Aligned_cols=100 Identities=15% Similarity=0.086 Sum_probs=58.7
Q ss_pred HHHHHHhhhhhhhhcc-ccCcEEEEEEeeccCCCCChhHHHHHHHH----------hhcCCeeec--CCccc-------c
Q 015562 154 VRATWMLQGEKRKRLE-EEKGIIMRFVIGHSATSGGILDRAIEAED----------RKHGDFMRL--DHVEG-------Y 213 (404)
Q Consensus 154 IReTW~~~~~~l~~l~-~~~~v~v~FviG~s~~~~~~~~~~L~~E~----------~~~~DiL~l--d~~Ds-------Y 213 (404)
+-+-|-.-. +|. ....|.+-|+++.+.. ++.....|+++. ..|+.|.++ ||.+. .
T Consensus 40 l~~y~~~L~----~L~YP~~lIsLgfLv~d~~e-~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~R 114 (269)
T PF03452_consen 40 LPDYFDNLL----SLTYPHELISLGFLVSDSSE-FDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSER 114 (269)
T ss_pred HHHHHHHHH----hCCCCchheEEEEEcCCCch-hHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhc
Confidence 555555432 232 2456889999998863 233444455443 235555544 45431 1
Q ss_pred c-----chhHHHHH----HHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcC
Q 015562 214 L-----ELSAKTKI----YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHR 258 (404)
Q Consensus 214 ~-----nLt~Ktl~----~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~ 258 (404)
+ ..-.+.++ ++-...-.+..+|++-.|-|+.-.++.|++.|..++
T Consensus 115 H~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~ 168 (269)
T PF03452_consen 115 HAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHD 168 (269)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHhCC
Confidence 1 11222222 222211135899999999999999999999998874
No 66
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=39.02 E-value=5.3e+02 Score=27.83 Aligned_cols=111 Identities=11% Similarity=-0.044 Sum_probs=59.1
Q ss_pred CcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccCCCcc----ccCcccc-cC-C----CCCCCCCCCC
Q 015562 232 DADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRY----HEPEYWK-FG-E----AGNRYFRHAT 301 (404)
Q Consensus 232 ~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kw----y~pe~~~-f~-d----~~~~Yp~y~~ 301 (404)
++++++..|-|..+.++.|..+ ....+.+.+.-..+...+ .+.+.| |.-+... +. + ..-.-+-.+.
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~-~~~~~~~~~VQ~pv~~~~---~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~ 233 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLY-NYLLPRHDFVQLPVFSLP---RDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSA 233 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHH-HhhcCCCCEEecceeccC---CchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 4699999999999999998754 333233322100011100 111111 1000000 00 0 0001223378
Q ss_pred CCceeeCHHHHHHHHHhcc---ccCCCCcchHHHHHHHhcCC--CeeecC
Q 015562 302 GQLYAISKDLAAYISINQH---VLHKYANEDVSLGSWFIGLD--VEHIDD 346 (404)
Q Consensus 302 G~gYvLS~dla~~I~~~~~---~l~~~~~EDV~vG~~l~~L~--v~~id~ 346 (404)
|.++++++++++.|..... .-...--||.-+|.-+...| +...++
T Consensus 234 Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~y~p~ 283 (504)
T PRK14716 234 GVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQIFVRV 283 (504)
T ss_pred CeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEEEecc
Confidence 9999999999999854221 22233579999999986554 444443
No 67
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=36.38 E-value=3e+02 Score=24.17 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=51.7
Q ss_pred HHHHHHHh-cCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccCCCccccC----cc----c--ccC
Q 015562 222 IYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEP----EY----W--KFG 290 (404)
Q Consensus 222 ~~~~wa~~-~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~p----e~----~--~f~ 290 (404)
.+++++.. ..+.+|++.+|.|+.+.++.|..++........+..|..... .+...|... ++ + ..+
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSK----NPDDSWITRLYAFAFLVFNRLRPLG 145 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeee----CCccCHHHHHHHHHHHHHHHHHHHH
Confidence 34444432 246899999999999999888888877654455666654311 111122100 00 0 000
Q ss_pred CCCCCCCCCCCCCceeeCHHHHHH
Q 015562 291 EAGNRYFRHATGQLYAISKDLAAY 314 (404)
Q Consensus 291 d~~~~Yp~y~~G~gYvLS~dla~~ 314 (404)
...-.-+.++.|+++++++++++.
T Consensus 146 ~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 146 RSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHcCCCeeecCchhhhHHHHHHh
Confidence 000122335789999999999988
No 68
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=30.41 E-value=65 Score=33.57 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=23.2
Q ss_pred CcceEEEeCCceEecHHHHHHHHHhcC
Q 015562 232 DADFYVKVDDDVHVNIATLGQTLVRHR 258 (404)
Q Consensus 232 ~a~f~lKvDDDvfVn~~~L~~~L~~~~ 258 (404)
.++|++..|||+++.++.+..+-....
T Consensus 170 ~ydlvlisDsgI~m~pdtildm~t~M~ 196 (431)
T KOG2547|consen 170 KYDLVLISDSGIFMKPDTILDMATTMM 196 (431)
T ss_pred cCCEEEEecCCeeecCchHHHHHHhhh
Confidence 567999999999999999998876653
No 69
>PRK10018 putative glycosyl transferase; Provisional
Probab=27.56 E-value=5.9e+02 Score=24.89 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=27.5
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhc
Q 015562 223 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRH 257 (404)
Q Consensus 223 ~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~ 257 (404)
....+.+....+|++..|+|..+.++.|..++...
T Consensus 76 a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~ 110 (279)
T PRK10018 76 VRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHK 110 (279)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHH
Confidence 34445555689999999999999999888777654
No 70
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=26.13 E-value=4e+02 Score=26.75 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=17.6
Q ss_pred CcceEEEeCCceEecHHHHHHHH
Q 015562 232 DADFYVKVDDDVHVNIATLGQTL 254 (404)
Q Consensus 232 ~a~f~lKvDDDvfVn~~~L~~~L 254 (404)
.++||+-..|||.....=+....
T Consensus 169 ~~~YyL~LEDDVia~~~f~~~i~ 191 (297)
T PF04666_consen 169 LGDYYLQLEDDVIAAPGFLSRIK 191 (297)
T ss_pred cCCeEEEecCCeEechhHHHHHH
Confidence 67899999999999876444433
No 71
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=24.02 E-value=4.5e+02 Score=26.97 Aligned_cols=66 Identities=14% Similarity=0.140 Sum_probs=45.5
Q ss_pred HHHHHHHHhhcCCeeecCCc-----ccccchhHHHHHHHHHHHh-cCCcceEEEeCCceEecHHHHHHHHHh
Q 015562 191 DRAIEAEDRKHGDFMRLDHV-----EGYLELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVR 256 (404)
Q Consensus 191 ~~~L~~E~~~~~DiL~ld~~-----DsY~nLt~Ktl~~~~wa~~-~~~a~f~lKvDDDvfVn~~~L~~~L~~ 256 (404)
.+-|.+=.++|-++|-+-.. ..-.....+...++.|+.. .+..+|++|+|.|-......|....-.
T Consensus 128 ~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~ 199 (347)
T PF06306_consen 128 EEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYI 199 (347)
T ss_pred HHHHHHHHHhCcccccccCcchhhccCCchhhhhhhhhhhhhhcccccceEEEEeccceeecHHHHhhhhee
Confidence 44455556788888776311 1111223456678888877 468999999999999999998776644
No 72
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=23.88 E-value=83 Score=20.67 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHHHHhHHHhccc
Q 015562 15 VSQKWTFLLCLGCFCAGMLFTNR 37 (404)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (404)
++--|+.++.+|+|-..+.|-||
T Consensus 4 v~lgWaal~~~ftfSlalVVWGR 26 (29)
T PF03742_consen 4 VSLGWAALMVVFTFSLALVVWGR 26 (29)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhccceeEEEec
Confidence 45569999999999999999887
No 73
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=23.10 E-value=80 Score=30.60 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=52.1
Q ss_pred cCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccCCCccccCcccccCCCCCCCCCCCCCCceeeCH
Q 015562 230 LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISK 309 (404)
Q Consensus 230 ~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~f~d~~~~Yp~y~~G~gYvLS~ 309 (404)
....+-++-+|||+.++.+.|......-+..|.-.+|.....-.....+++|-....| .+.|- -...++-++.+
T Consensus 73 ~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~~~-----~~~yS-mvLt~aaf~h~ 146 (247)
T PF09258_consen 73 EIETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTSEW-----SNEYS-MVLTGAAFYHR 146 (247)
T ss_dssp T--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE-SS-----S--BS-EE-TTEEEEET
T ss_pred ccCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccccCC-----CCcch-hhhhhhHhhcc
Confidence 3478899999999999999998888776666655678642111111133444221111 22332 23344455566
Q ss_pred HHHHHHHHhc-ccc-----CCCCcchHHHHHHHh
Q 015562 310 DLAAYISINQ-HVL-----HKYANEDVSLGSWFI 337 (404)
Q Consensus 310 dla~~I~~~~-~~l-----~~~~~EDV~vG~~l~ 337 (404)
.......... ..+ +...=||+.+-....
T Consensus 147 ~yl~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs 180 (247)
T PF09258_consen 147 YYLELYTHWLPASIREYVDEHFNCEDIAMNFLVS 180 (247)
T ss_dssp HHHHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHHhccCCHHHHHHHHHHH
Confidence 6554433211 111 123569998876664
No 74
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=22.86 E-value=79 Score=24.25 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhHHHhcc
Q 015562 20 TFLLCLGCFCAGMLFTN 36 (404)
Q Consensus 20 ~~~~~~~~~~~~~~~~~ 36 (404)
++++|++|+.+|.+++-
T Consensus 42 ~~~~c~~S~~lG~~~~~ 58 (60)
T PF06072_consen 42 VVALCVLSGGLGALVAW 58 (60)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 45889999999988763
Done!