Query 015562
Match_columns 404
No_of_seqs 269 out of 1202
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 14:46:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.9 6.3E-24 2.2E-28 206.6 16.9 195 133-354 11-217 (280)
2 1xhb_A Polypeptide N-acetylgal 93.6 1.4 4.7E-05 44.2 15.2 165 174-345 62-251 (472)
3 2d7i_A Polypeptide N-acetylgal 92.1 4.5 0.00015 42.0 16.9 159 174-339 145-323 (570)
4 1qg8_A Protein (spore coat pol 91.7 6.6 0.00023 35.0 15.7 115 222-346 78-208 (255)
5 2ffu_A Ppgalnact-2, polypeptid 90.8 5.4 0.00018 40.4 15.6 161 174-345 99-283 (501)
6 4fix_A UDP-galactofuranosyl tr 90.1 6.8 0.00023 41.7 16.2 117 222-340 258-403 (657)
7 3bcv_A Putative glycosyltransf 87.9 9.3 0.00032 33.6 13.2 165 173-347 34-220 (240)
8 2z86_A Chondroitin synthase; G 83.7 16 0.00056 37.7 14.4 117 223-340 165-316 (625)
9 4hg6_A Cellulose synthase subu 72.3 29 0.00098 37.6 12.5 131 218-352 225-368 (802)
10 2z86_A Chondroitin synthase; G 71.5 42 0.0014 34.5 13.1 156 172-345 403-565 (625)
11 1fo8_A Alpha-1,3-mannosyl-glyc 44.5 51 0.0018 32.1 7.5 87 222-316 89-178 (343)
12 2c0n_A A197; thermophil protei 39.1 2.2E+02 0.0076 25.8 10.7 133 192-336 15-158 (203)
13 2bo4_A Mannosylglycerate synth 37.8 81 0.0028 31.3 7.9 170 173-345 28-210 (397)
14 2pnv_A Small conductance calci 28.3 51 0.0018 22.6 3.2 30 77-109 8-37 (43)
15 2lnd_A De novo designed protei 27.9 97 0.0033 24.2 5.1 70 141-228 31-103 (112)
16 2z5i_A TM, general control pro 27.7 70 0.0024 22.6 4.0 26 84-109 8-33 (52)
17 1vf5_H Protein PET N; photosyn 24.9 47 0.0016 20.9 2.2 23 15-37 4-26 (29)
18 1q90_N Cytochrome B6F complex 22.0 47 0.0016 21.2 1.8 23 15-37 6-28 (31)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.91 E-value=6.3e-24 Score=206.60 Aligned_cols=195 Identities=17% Similarity=0.162 Sum_probs=132.3
Q ss_pred CCeeEEEEEECCCC-CHHHHHHHHHHHHhhhhhhhhccccCcEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCc-
Q 015562 133 RRYLMVVGINTAFS-SRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHV- 210 (404)
Q Consensus 133 ~~~~lvI~V~S~~~-~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~- 210 (404)
..-.|+|+|+|+++ +..|+++||+||++.... . .||.+..+ +. .+... ..++++..++.
T Consensus 11 ~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~--------~---~fifsd~~--d~----~l~~~--~~~~~~~~~~~~ 71 (280)
T 2j0a_A 11 QLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQ--------Q---TFIFTDSP--DE----RLQER--LGPHLVVTQCSA 71 (280)
T ss_dssp CGGGEEEEEECCGGGTTTTHHHHHHTGGGGSGG--------G---EEEEESSC--CH----HHHHH--HGGGEEECCC--
T ss_pred CcccEEEEEECcHHHHHHHHHHHHHHHhccCCC--------c---eEEEcCCC--cc----ccccc--ccccceeccccc
Confidence 34678899999998 557889999999987521 1 24333322 22 23222 24568777764
Q ss_pred -ccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCCeEEEEeccCcccccCCCccccCccccc
Q 015562 211 -EGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKF 289 (404)
Q Consensus 211 -DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~f 289 (404)
+++.+++.|+...+++.. +.+++|++|+|||+|||+++|+++|..+++..++|+|......+++ .+++.|...+
T Consensus 72 ~~~~~~l~~K~~~~~~~~l-~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~---~~~~~~~~~~- 146 (280)
T 2j0a_A 72 EHSHPALSCKMAAEFDAFL-VSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIH---ASELQSKQRT- 146 (280)
T ss_dssp -----CCCHHHHHHHHHHH-HHTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC-------------------
T ss_pred cccccchHHHHHHHHHHHh-CCCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCcccc---ccccCccccc-
Confidence 467889999999998765 3599999999999999999999999999888899999865333332 1344443222
Q ss_pred CCCCCCCCCCC-CCCceeeCHHHHHHHHHhcccc-------CCCCcchHHHHHHHh-cCCCeeecCCCcccCCC
Q 015562 290 GEAGNRYFRHA-TGQLYAISKDLAAYISINQHVL-------HKYANEDVSLGSWFI-GLDVEHIDDRRLCCGTP 354 (404)
Q Consensus 290 ~d~~~~Yp~y~-~G~gYvLS~dla~~I~~~~~~l-------~~~~~EDV~vG~~l~-~L~v~~id~~~f~~~~~ 354 (404)
+...| +|| +|+||+||+++++.|+...... .....||+++|.|+. .+||..++.+.|+...+
T Consensus 147 --~~~~~-~y~~GGaG~vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~~~~Fh~~~~ 217 (280)
T 2j0a_A 147 --KLVRF-WFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHSHLE 217 (280)
T ss_dssp ------C-CEECGGGCEEEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEECTTCCCSSS
T ss_pred --ccccc-CcccCCCEEEECHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhcCCCCceecccccCCCc
Confidence 12245 466 6789999999999999754322 122468999999998 99999999999987543
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=93.61 E-value=1.4 Score=44.25 Aligned_cols=165 Identities=15% Similarity=0.141 Sum_probs=86.9
Q ss_pred EEEEEEeeccCCCCChhHHHHHHHHhhcC-CeeecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHH
Q 015562 174 IIMRFVIGHSATSGGILDRAIEAEDRKHG-DFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 252 (404)
Q Consensus 174 v~v~FviG~s~~~~~~~~~~L~~E~~~~~-DiL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~ 252 (404)
..++.|-..|. ++.....|++-.+.+. .+..+...+.. .+. .+...+.+....+|++..|+|+.+.++.|..
T Consensus 62 ~EIIvVDd~S~--d~~t~~~l~~~~~~~~~~v~vi~~~~n~-G~~----~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ 134 (472)
T 1xhb_A 62 EEIVLVDDASE--RDFLKRPLESYVKKLKVPVHVIRMEQRS-GLI----RARLKGAAVSRGQVITFLDAHCECTAGWLEP 134 (472)
T ss_dssp EEEEEEECSCC--CGGGTHHHHHHHHSSSSCEEEEECSSCC-CHH----HHHHHHHHHCCSSEEEEEESSEEECTTCHHH
T ss_pred eEEEEEECCCC--cHHHHHHHHHHHHHCCCcEEEEECCCCC-ChH----HHHHHHHHhccCCeEEEECCCeEeCccHHHH
Confidence 45555554443 2234455555445566 45455443322 122 3444555556799999999999999988887
Q ss_pred HHHhcCCCCCeEE-EEec--c-CcccccC-------CCccccCcccc-c---------CC-CCCCCCCCCCCCceeeCHH
Q 015562 253 TLVRHRSKPRVYI-GCMK--S-GPVLNQK-------GVRYHEPEYWK-F---------GE-AGNRYFRHATGQLYAISKD 310 (404)
Q Consensus 253 ~L~~~~~~~~lYi-G~~~--~-gpv~r~~-------~~Kwy~pe~~~-f---------~d-~~~~Yp~y~~G~gYvLS~d 310 (404)
++......+...+ |.+. . ....... .-.|.....|. + .+ ......+++.|++++++++
T Consensus 135 ll~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~ 214 (472)
T 1xhb_A 135 LLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRD 214 (472)
T ss_dssp HHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHH
T ss_pred HHHHHHhCCCEEEEeeeeeEcCCCceeccCCCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHH
Confidence 7766543333333 3221 1 1000000 00111110000 0 00 0022335678999999999
Q ss_pred HHHHHHHhccccCCCCcchHHHHHHHh--cCCCeeec
Q 015562 311 LAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHID 345 (404)
Q Consensus 311 la~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~id 345 (404)
+...+-.-...+..+..||+-++.-+. |..+..+.
T Consensus 215 ~~~~iGgfde~~~~~g~ED~dl~~R~~~~G~~i~~~p 251 (472)
T 1xhb_A 215 YFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVT 251 (472)
T ss_dssp HHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCEEEEEE
T ss_pred HHHHcCCCCCcccccCchhHHHHHHHHhcCCeEEEcc
Confidence 999876444444445579988776554 54444443
No 3
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=92.06 E-value=4.5 Score=41.99 Aligned_cols=159 Identities=13% Similarity=0.021 Sum_probs=84.0
Q ss_pred EEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHH
Q 015562 174 IIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQT 253 (404)
Q Consensus 174 v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~ 253 (404)
..|+.|-..|. ++.+...|++-.+.+..|-.+...+.. .+. .+...+.+....+|++.+|+|+.+.++-|..+
T Consensus 145 ~EIIVVDDgS~--D~tl~~~l~~~~~~~~~v~vi~~~~n~-G~~----~A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~l 217 (570)
T 2d7i_A 145 AEIVLVDDFSD--REHLKKPLEDYMALFPSVRILRTKKRE-GLI----RTRMLGASVATGDVITFLDSHCEANVNWLPPL 217 (570)
T ss_dssp EEEEEEECSCC--CGGGTHHHHHHHTTSTTEEEEECSSCC-CHH----HHHHHHHHHCCSSEEEECCSSEEECTTCSHHH
T ss_pred EEEEEEECCCC--cHHHHHHHHHHHHhCCeEEEEECCCCC-CHH----HHHHHHHHhcCCCEEEEEcCCccccccHHHHH
Confidence 35555554443 334355565555666555555433322 222 23444555457899999999999998777776
Q ss_pred HHhcCCCCCeEEEEec---cCcc--ccc---C----CCcccc-----C--cccccCCC-CCCCCCCCCCCceeeCHHHHH
Q 015562 254 LVRHRSKPRVYIGCMK---SGPV--LNQ---K----GVRYHE-----P--EYWKFGEA-GNRYFRHATGQLYAISKDLAA 313 (404)
Q Consensus 254 L~~~~~~~~lYiG~~~---~gpv--~r~---~----~~Kwy~-----p--e~~~f~d~-~~~Yp~y~~G~gYvLS~dla~ 313 (404)
+......+.+.+|... .+.. .+. . .-.|.. + ....+.++ .....+++.|++.++++++..
T Consensus 218 l~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~ 297 (570)
T 2d7i_A 218 LDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFW 297 (570)
T ss_dssp HHHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHH
T ss_pred HHHHHhCCCEEEeeeeeccCCCchhhccccCCcccccccccccccccccchhhhccCCCcceecccccceEEEEEHHHHH
Confidence 6655333444444321 1110 000 0 001110 0 00000000 011234578999999999999
Q ss_pred HHHHhccccCCCCcchHHHHHHHhcC
Q 015562 314 YISINQHVLHKYANEDVSLGSWFIGL 339 (404)
Q Consensus 314 ~I~~~~~~l~~~~~EDV~vG~~l~~L 339 (404)
.|---...+..+..||+-+..-+...
T Consensus 298 ~iGgfDe~~~~~g~ED~dl~~Rl~~~ 323 (570)
T 2d7i_A 298 ELGGYDPGLEIWGGEQYEISFKVWMC 323 (570)
T ss_dssp HTTSSCTTCCSSSSHHHHHHHHHHHT
T ss_pred hcCCCCCcccccCcchHHHHHHHHhC
Confidence 87544444444457998887665433
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=91.66 E-value=6.6 Score=35.03 Aligned_cols=115 Identities=9% Similarity=-0.039 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcC--CCCCeEEEEec----c--CcccccCCCccccCcccccCCCC
Q 015562 222 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHR--SKPRVYIGCMK----S--GPVLNQKGVRYHEPEYWKFGEAG 293 (404)
Q Consensus 222 ~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~--~~~~lYiG~~~----~--gpv~r~~~~Kwy~pe~~~f~d~~ 293 (404)
..++.+.+..+.+|++.+|||.++.++.|..++.... +...+..|.+. . +.++ ..+..|..- + .
T Consensus 78 ~a~N~gi~~a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~-~---~ 149 (255)
T 1qg8_A 78 ALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIV----KETVRPAAQ-V---T 149 (255)
T ss_dssp HHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEE----EEEEECCCS-C---B
T ss_pred HHHHHHHHHcCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEEEeCCCCcch----hhccCchHH-H---H
Confidence 4566666666899999999999999888877776553 23344444432 1 1111 111122110 0 1
Q ss_pred CCCCCCCCCCceeeCHHHHHHHH-Hh------ccccCCCCcchHHHHHHHhcCC-CeeecC
Q 015562 294 NRYFRHATGQLYAISKDLAAYIS-IN------QHVLHKYANEDVSLGSWFIGLD-VEHIDD 346 (404)
Q Consensus 294 ~~Yp~y~~G~gYvLS~dla~~I~-~~------~~~l~~~~~EDV~vG~~l~~L~-v~~id~ 346 (404)
.....+..|++.++.++++..+- .- ... ....||..+..-+...+ +..++.
T Consensus 150 ~~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~~--~~~~eD~~~~~r~~~~g~~~~~~~ 208 (255)
T 1qg8_A 150 WNAPCAIDHCSVMHRYSVLEKVKEKFGSYWDESPA--FYRIGDARFFWRVNHFYPFYPLDE 208 (255)
T ss_dssp SCCTTTSCGGGEEEETHHHHHHHHHHSSSSCCCGG--GSTTHHHHHHHHHTTTCCBEEEEE
T ss_pred HhhcCCCccceEEEEHHHHHhhcccccccccCCcc--cchHHHHHHHHHHHHhCCEEEecC
Confidence 12334578999999999999976 22 122 23579998877764333 444443
No 5
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=90.80 E-value=5.4 Score=40.37 Aligned_cols=161 Identities=12% Similarity=-0.001 Sum_probs=84.0
Q ss_pred EEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHH
Q 015562 174 IIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQT 253 (404)
Q Consensus 174 v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~ 253 (404)
..+++|-..|. ++.+ ....+.+..+-.+...+.. - .-.+...+.+....+|++.+|+|..+.++-|..+
T Consensus 99 ~EIIvVDDgS~--D~t~----~~~~~~~~~v~vi~~~~n~---G--~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 99 KEIILVDDYSN--DPED----GALLGKIEKVRVLRNDRRE---G--LMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp EEEEEEECSCS--CTHH----HHGGGGBTTEEEEECSSCC---H--HHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHH
T ss_pred eeEEEEECCCC--chHH----HHHHhcCCCEEEEECCCCc---C--HHHHHHHHHHhcCCCEEEEECCCcccCccHHHHH
Confidence 46666665443 2332 2223445555554433322 1 1234555555558999999999999999888777
Q ss_pred HHhcCCCCCeEEEEec---cCccc---------c-----cCCCccc-cCcc-c--ccCCC-CCCCCCCCCCCceeeCHHH
Q 015562 254 LVRHRSKPRVYIGCMK---SGPVL---------N-----QKGVRYH-EPEY-W--KFGEA-GNRYFRHATGQLYAISKDL 311 (404)
Q Consensus 254 L~~~~~~~~lYiG~~~---~gpv~---------r-----~~~~Kwy-~pe~-~--~f~d~-~~~Yp~y~~G~gYvLS~dl 311 (404)
+......+...++... ..... + ....+|. .+.. . ...++ .....+++.|++.++++++
T Consensus 168 l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~ 247 (501)
T 2ffu_A 168 LERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFY 247 (501)
T ss_dssp HHHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHH
T ss_pred HHHHHhCCCeEEEeeeccCcCCCceeecCCcccceEeeecCCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHHH
Confidence 7665333333333321 10000 0 0000110 0100 0 00000 1122356789999999999
Q ss_pred HHHHHHhccccCCCCcchHHHHHHH--hcCCCeeec
Q 015562 312 AAYISINQHVLHKYANEDVSLGSWF--IGLDVEHID 345 (404)
Q Consensus 312 a~~I~~~~~~l~~~~~EDV~vG~~l--~~L~v~~id 345 (404)
...|-.-...+..+..||+-+..-+ .|..+..+.
T Consensus 248 ~~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p 283 (501)
T 2ffu_A 248 FEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIP 283 (501)
T ss_dssp HHHTTCCCTTCCSSSSHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhCCCCccccccCcchHHHHHHHHhcCCeEEEcc
Confidence 9987644444444558999886655 454444433
No 6
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=90.07 E-value=6.8 Score=41.71 Aligned_cols=117 Identities=16% Similarity=0.127 Sum_probs=65.2
Q ss_pred HHHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcC--CCCCeEEEEec--cCc--------ccccCCCccc-cCccc-
Q 015562 222 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHR--SKPRVYIGCMK--SGP--------VLNQKGVRYH-EPEYW- 287 (404)
Q Consensus 222 ~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~--~~~~lYiG~~~--~gp--------v~r~~~~Kwy-~pe~~- 287 (404)
.+++.|....+++|++.+|||+.+.++.|..++.... +...+..|.+. ..+ .+...+..|. .|...
T Consensus 258 ~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 337 (657)
T 4fix_A 258 RVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAEY 337 (657)
T ss_dssp HHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEEETTSTTEECCSCEEEETTTTEEEECTTCCS
T ss_pred HHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEecCCCCceeeecccEeccccccccccccccc
Confidence 4566665544789999999999999988888776543 22233333332 111 1100000010 00000
Q ss_pred --ccC-------------CCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 015562 288 --KFG-------------EAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD 340 (404)
Q Consensus 288 --~f~-------------d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~ 340 (404)
.|+ ........|++|++.++.+++.+.+---... .+..||+-++.=+...|
T Consensus 338 ~~~f~~~~l~~~~~~~~~~~~~~~v~~~~g~~~lirr~v~~~vGgfd~~--F~~~ED~Dl~lR~~~~G 403 (657)
T 4fix_A 338 DHDFAEYPLNDNNSRSKLLHRRIDVDYNGWWTCMIPRQVAEELGQPLPL--FIKWDDADYGLRAAEHG 403 (657)
T ss_dssp CEETTTSCSSCSSHHHHGGGBCCCCSBCCTTEEEEEHHHHHHHCSCCSC--SSSSHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccccceeccccchhHhHhhHHHHHHhCCChhH--hccCcHHHHHHHHHHcC
Confidence 000 0012234588999999999999987432221 23469999988775444
No 7
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=87.88 E-value=9.3 Score=33.62 Aligned_cols=165 Identities=8% Similarity=0.015 Sum_probs=80.8
Q ss_pred cEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHH
Q 015562 173 GIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 252 (404)
Q Consensus 173 ~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~ 252 (404)
.+.++.|-..+. + .....+++-.+++..+..+. .+ |.- .-...+.+.+....+|++.+|+|.++.++.|..
T Consensus 34 ~~eiIvvDd~S~--d-~t~~~~~~~~~~~~~i~~i~-~~---n~G--~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~ 104 (240)
T 3bcv_A 34 DIEIILIDDESP--D-NCPKICDDYAAQYPNIKVIH-KK---NAG--LGMACNSGLDVATGEYVAFCDSDDYVDSDMYMT 104 (240)
T ss_dssp SEEEEEEECCCS--S-SHHHHHHHHHHHCSSEEEEE-CC---CCC--HHHHHHHHHHHCCSSEEEECCTTCCCCTTHHHH
T ss_pred CeEEEEEECCCC--c-CHHHHHHHHHhhCCCEEEEE-CC---CCC--hHHHHHHHHHHcCCCEEEEECCCCcCCHHHHHH
Confidence 566766665443 2 23344444445566665553 22 222 123455566656889999999999999888777
Q ss_pred HHHhcCC-CCCeEEEEec----cCc----cccc-CCCccccCccc------ccCCCCCCC---C-CCCCCCceeeCHHHH
Q 015562 253 TLVRHRS-KPRVYIGCMK----SGP----VLNQ-KGVRYHEPEYW------KFGEAGNRY---F-RHATGQLYAISKDLA 312 (404)
Q Consensus 253 ~L~~~~~-~~~lYiG~~~----~gp----v~r~-~~~Kwy~pe~~------~f~d~~~~Y---p-~y~~G~gYvLS~dla 312 (404)
++..... ...+.+|... .+. +... ....++....+ .++ ....+ + ...+|++.++.++++
T Consensus 105 l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~rr~~~ 183 (240)
T 3bcv_A 105 MYNVAQKYTCDAVFTGLKRITMAGIPTGTVTHQKEFKLYKNKNEIHTLLKDLIA-SDPYAREERAIQVSAKVVLYRRNLI 183 (240)
T ss_dssp HHHHHHHHTCSEEEC--------------------CEEECSHHHHHHHHGGGTS-SCHHHHHHHHHHHTCSCEEEEHHHH
T ss_pred HHHHHHhcCCCEEEEeeEEEccCCccccccccccccccccCHHHHHHHHHHHhh-cchhhccccccccchhheeeeHHHH
Confidence 7765532 3344444321 111 1100 00111111100 000 00000 0 013578889999999
Q ss_pred HHHHHhccccCCCCcchHHHHHHHh--cCCCeeecCC
Q 015562 313 AYISINQHVLHKYANEDVSLGSWFI--GLDVEHIDDR 347 (404)
Q Consensus 313 ~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~id~~ 347 (404)
+.+-.....-..+..||+.+..-+. |..+..+++.
T Consensus 184 ~~~g~~f~~~~~~~~eD~~~~~r~~~~g~~i~~~~~~ 220 (240)
T 3bcv_A 184 EKKHLRFVSERILPSEDLIFNVDVLANSNIVCVLPQT 220 (240)
T ss_dssp HHTTCCCCCTTTCTTHHHHHHHHHHTTCSCEEECC--
T ss_pred HHcCCccCCCCCccCCCHHHHHHHHHhCCEEEEECCC
Confidence 8853111111123469999887664 4455555554
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=83.68 E-value=16 Score=37.66 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=64.3
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCC-eEEEEec---cCc-c----------ccc-----------
Q 015562 223 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPR-VYIGCMK---SGP-V----------LNQ----------- 276 (404)
Q Consensus 223 ~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~-lYiG~~~---~gp-v----------~r~----------- 276 (404)
.++.+.+....+|++.+|+|..+.++.|..++......+. ..+|... ... . .+.
T Consensus 165 a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (625)
T 2z86_A 165 VRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVA 244 (625)
T ss_dssp HHHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEECCEEEECCTTCCHHHHHHSTTGGGTSCC--------
T ss_pred HHHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEEeeeeccCcccchhhcccchHHhhhcchhccCCchh
Confidence 4455555568999999999999999888777766532232 2333211 110 0 000
Q ss_pred ------CCCccccCccc---ccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 015562 277 ------KGVRYHEPEYW---KFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD 340 (404)
Q Consensus 277 ------~~~Kwy~pe~~---~f~d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~ 340 (404)
....|...... .+. .......++.|++.+++++++..+---...+..+..||.-++.=+...|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~rr~~l~~iGgfde~~~~~g~ED~dl~~Rl~~~G 316 (625)
T 2z86_A 245 GKVEQNKSVDWRIEHFKNTDNLR-LCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREG 316 (625)
T ss_dssp -------CCCTHHHHHHHTTTTT-TCSCGGGGCCTTEEEEETHHHHHHCCCCTTCSSCCCHHHHHHHHHHHTT
T ss_pred hhhccCCccccchhhhccccccc-ccCCceeEEeeceeeeEHHHHHHhCCCccccccCCcchhhhhhhHHhCC
Confidence 00011100000 000 0011123478999999999999875333344444579999987775444
No 9
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=72.27 E-value=29 Score=37.61 Aligned_cols=131 Identities=14% Similarity=0.006 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHHhcCCCCC--eEEEEec--c-Cccccc--CCCccccC-cccc-
Q 015562 218 AKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPR--VYIGCMK--S-GPVLNQ--KGVRYHEP-EYWK- 288 (404)
Q Consensus 218 ~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~--lYiG~~~--~-gpv~r~--~~~Kwy~p-e~~~- 288 (404)
.|.- .++.+.+..+.+|++.+|+|+.+.++.|...+......++ +..|... + .+..+. ....+... +.++
T Consensus 225 GKa~-alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (802)
T 4hg6_A 225 AKAG-NMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYG 303 (802)
T ss_dssp HHHH-HHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHH
T ss_pred cchH-HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHH
Confidence 4433 4566666668999999999999999888888776522232 2222211 1 110000 00000000 0000
Q ss_pred cCCC--CCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcC--CCeeecCCCcccC
Q 015562 289 FGEA--GNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGL--DVEHIDDRRLCCG 352 (404)
Q Consensus 289 f~d~--~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L--~v~~id~~~f~~~ 352 (404)
.... ...-.+++.|++.++.+++.+.+---. .....||..++.-+... .+..+++....+.
T Consensus 304 ~~~~~~~~~~~~~~~G~~~~~Rr~al~~vGgf~---~~~~~ED~~l~~rl~~~G~ri~~~~~~~~~~~ 368 (802)
T 4hg6_A 304 KIHRGLDRWGGAFFCGSAAVLRRRALDEAGGFA---GETITEDAETALEIHSRGWKSLYIDRAMIAGL 368 (802)
T ss_dssp THHHHHHHTTCCCCCSSSEEEEHHHHHHHTTCC---CSSSSHHHHHHHHHHTTTCCEEECCCCCEEEC
T ss_pred HHHhhHhhcCCceecccchhhhHHHHHHcCCcC---CCCcchHHHHHHHHHHcCCeEEEecCCEEEec
Confidence 0000 000113467999999999999874221 12235999999888644 4555665555443
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=71.45 E-value=42 Score=34.49 Aligned_cols=156 Identities=11% Similarity=0.046 Sum_probs=79.4
Q ss_pred CcEEEEEEeeccCCCCChhHHHHHHHHhhcCCeeecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHH
Q 015562 172 KGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLG 251 (404)
Q Consensus 172 ~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DiL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVn~~~L~ 251 (404)
..+.++.|-..|. ++ ....+.+-.+.+..+..+. .+ |.- .-..++.+.+....+|++.+|+|.++.++.|.
T Consensus 403 ~~~eiivvdd~S~--d~-t~~~~~~~~~~~~~i~~~~-~~---n~G--~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~ 473 (625)
T 2z86_A 403 TDLEVCICDDGST--DD-TLRILQEHYANHPRVRFIS-QK---NKG--IGSASNTAVRLCRGFYIGQLDSDDFLEPDAVE 473 (625)
T ss_dssp CSEEEEEEEESCS--SS-HHHHHHHHHTTCTTEEEEE-EC---CCC--HHHHHHHHHHHCCSSEEEECCTTCEECTTHHH
T ss_pred CCeEEEEEECcCC--hh-HHHHHHHHHhhCCcEEEEe-CC---CCC--HHHHHHHHHHhcCCCEEEEECCCcccChhHHH
Confidence 3566766665554 22 3333443344455555443 22 221 12345556665688999999999999998888
Q ss_pred HHHHhcC--CCCCeEEEEec----cCcccccCCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCC
Q 015562 252 QTLVRHR--SKPRVYIGCMK----SGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKY 325 (404)
Q Consensus 252 ~~L~~~~--~~~~lYiG~~~----~gpv~r~~~~Kwy~pe~~~f~d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~ 325 (404)
.++.... +.-.+..+... .+..+... +..+. +. .......++.|.+.++.+++...+-.-...+ .
T Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~-~~---~~~~~~~~~~~~~~~~~r~~~~~~ggfd~~~--~ 544 (625)
T 2z86_A 474 LCLDEFRKDLSLACVYTTNRNIDREGNLISNG---YNWPI-YS---REKLTSAMICHHFRMFTARAWNLTEGFNESI--S 544 (625)
T ss_dssp HHHHHHHHCTTCSEEEEEEEEECTTSCEEEEC---CCCSS-CC---HHHHTTSCCCCSCEEEEHHHHTTTTCCCSSC--S
T ss_pred HHHHHHHhCCCeeEEEeeeEEECCCCCEeccC---ccccc-CC---HHHHhhcccCCceEEEEHHHHHHhCCCCCcc--C
Confidence 7776542 22233223211 12111110 11111 00 0011223456788899998766543222222 2
Q ss_pred CcchHHHHHHHhcCC-Ceeec
Q 015562 326 ANEDVSLGSWFIGLD-VEHID 345 (404)
Q Consensus 326 ~~EDV~vG~~l~~L~-v~~id 345 (404)
..||.-+..-+...+ +.+++
T Consensus 545 ~~eD~dl~~r~~~~g~~~~~~ 565 (625)
T 2z86_A 545 NAVDYDMYLKLSEVGPFKHIN 565 (625)
T ss_dssp SCHHHHHHHHHTTTSCEEEEE
T ss_pred ChHHHHHHHHHHHhCCEEEeC
Confidence 469998877665444 44443
No 11
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=44.49 E-value=51 Score=32.12 Aligned_cols=87 Identities=15% Similarity=0.071 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCcceEEEeCCceEecHHHH---HHHHHhcCCCCCeEEEEeccCcccccCCCccccCcccccCCCCCCCCC
Q 015562 222 IYFATAVSLWDADFYVKVDDDVHVNIATL---GQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFR 298 (404)
Q Consensus 222 ~~~~wa~~~~~a~f~lKvDDDvfVn~~~L---~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~f~d~~~~Yp~ 298 (404)
.++.++.....+++++.+|||..+.++=+ .+.|......++++.-+-.+.+....... -..+..+++. .
T Consensus 89 ~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~~ISa~n~~g~~~~~~-~~~~~~lyrs-------~ 160 (343)
T 1fo8_A 89 WALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVSAWNDNGKEQMVD-SSKPELLYRT-------D 160 (343)
T ss_dssp HHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEEESCCTTCBGGGSC-TTCTTCEEEE-------S
T ss_pred HHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEEEEecccCcccccccc-ccCcceEEee-------c
Confidence 45555555457999999999999999655 33333333456665322111111000000 0112223321 2
Q ss_pred CCCCCceeeCHHHHHHHH
Q 015562 299 HATGQLYAISKDLAAYIS 316 (404)
Q Consensus 299 y~~G~gYvLS~dla~~I~ 316 (404)
|..|-|+++++++-+.+-
T Consensus 161 ~f~~wGWa~wr~~W~e~~ 178 (343)
T 1fo8_A 161 FFPGLGWLLLAELWAELE 178 (343)
T ss_dssp SCCCSSEEEEHHHHHHHG
T ss_pred CCCchhhhhcHHHHHHHh
Confidence 445789999999988654
No 12
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=39.10 E-value=2.2e+02 Score=25.78 Aligned_cols=133 Identities=12% Similarity=-0.002 Sum_probs=72.8
Q ss_pred HHHHHHHhhcCCeeecCCcccccchhHHHHHHHHHHHhcCCcceEEEeCCc---eEecHHHHHHHHHhcCCCCCeEEEEe
Q 015562 192 RAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDD---VHVNIATLGQTLVRHRSKPRVYIGCM 268 (404)
Q Consensus 192 ~~L~~E~~~~~DiL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDD---vfVn~~~L~~~L~~~~~~~~lYiG~~ 268 (404)
-.|+.+..+.+==+++...++.-....=++ +.-..+..++++++.+|-| +-.+++.+.++|+. ...+.+|..
T Consensus 15 l~l~~~l~~~gi~~~l~~~~SlI~raRN~l--v~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl~~---g~DVV~GsY 89 (203)
T 2c0n_A 15 LPLIDFLVKNDIEYVILSRRNHVAVQREIA--LDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKFNE---GYDVVCGYY 89 (203)
T ss_dssp HHHHHHHHHTTCCEEEECCCSCHHHHHHHH--HHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHHHH---TCSEEEEEC
T ss_pred hHHHHHHHhCCCeEEEEccccchHHHHHHH--HHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHHhC---CCCEEEEEe
Confidence 345556566554445554443322222111 1112345689999999999 99999999999965 346777873
Q ss_pred --ccCcccccCCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhcc------ccCCCCcchHHHHHHH
Q 015562 269 --KSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQH------VLHKYANEDVSLGSWF 336 (404)
Q Consensus 269 --~~gpv~r~~~~Kwy~pe~~~f~d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~------~l~~~~~EDV~vG~~l 336 (404)
++.. -.....+.|.-+ +. + .=-.||++|.-+++|.+...|....- ..+..--|||++=.-.
T Consensus 90 p~K~~~-~~s~~a~~y~~~---i~--~-~~V~d~~tGF~lIkR~V~e~L~~p~fl~~~~~e~~~~~gEdv~F~~~~ 158 (203)
T 2c0n_A 90 YLKTLR-GYSVYRKDWEKE---IF--D-GEVNGCGLGFTFIKREFLEKIKRPAFLAFKPIESPHWIGEDVYFFSTH 158 (203)
T ss_dssp BCTTSS-SBSEESSSBCSS---CC--C-EECSEECSSEEEEEHHHHTTSCSSCCCC---------CCHHHHHHHHH
T ss_pred eccCCC-ccchHHHHHHHh---cc--C-ceeeeccccEEEEhHHHHHHHhhhhhhcCChhhhccccCCceEEEecc
Confidence 2211 000001111111 10 0 11247888999999999988755321 1222335898875544
No 13
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=37.82 E-value=81 Score=31.28 Aligned_cols=170 Identities=8% Similarity=-0.032 Sum_probs=84.1
Q ss_pred cEEEEEEeeccCCCCChhHHHHHHHHh-hcCC-eeecCCcc-c--ccchhHHHHHHHHHHHhcCCcceEEEeCCce-Eec
Q 015562 173 GIIMRFVIGHSATSGGILDRAIEAEDR-KHGD-FMRLDHVE-G--YLELSAKTKIYFATAVSLWDADFYVKVDDDV-HVN 246 (404)
Q Consensus 173 ~v~v~FviG~s~~~~~~~~~~L~~E~~-~~~D-iL~ld~~D-s--Y~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDv-fVn 246 (404)
...+++|-+-|++...++-+.+..+.. .++. ++...... . -.....=...+|+||....+.++++.+|-|. ..+
T Consensus 28 ~~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~ 107 (397)
T 2bo4_A 28 RVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFG 107 (397)
T ss_dssp TCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCC
T ss_pred CeEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCC
Confidence 456788887775311111111222332 3444 33222110 1 1234444667888887435889999999999 488
Q ss_pred HHHHHHHHHhcCCCCCeEEEEecc---CcccccCCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhc--cc
Q 015562 247 IATLGQTLVRHRSKPRVYIGCMKS---GPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQ--HV 321 (404)
Q Consensus 247 ~~~L~~~L~~~~~~~~lYiG~~~~---gpv~r~~~~Kwy~pe~~~f~d~~~~Yp~y~~G~gYvLS~dla~~I~~~~--~~ 321 (404)
+.-+..++......-.+.+|.... +..+.....++.....+.+ -.....+...++.+++++++++.+.... ..
T Consensus 108 P~~i~~Ll~~l~~g~D~V~g~~~r~~~~~~~~~~~~~~ll~~~~~~--~~~~~i~dp~sG~~a~~R~vl~~l~~~~~~~~ 185 (397)
T 2bo4_A 108 PDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFALLWPH--TELSWIEQPLGGELLMRREVAAMLYEDERVRR 185 (397)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHHHHCTT--SSGGGCSCTTCCCEEEEHHHHHHHHHCHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccccCCcHHHHHHHHHHHHHHHHH--hhccccccCCcccEEEeHHHHHHHhhhcccCc
Confidence 887777776543334566675321 1111000111100000000 0001222345777899999999885421 12
Q ss_pred cCCCCcchHHHHHHH--hcCCCeeec
Q 015562 322 LHKYANEDVSLGSWF--IGLDVEHID 345 (404)
Q Consensus 322 l~~~~~EDV~vG~~l--~~L~v~~id 345 (404)
.+.|. .|+.+-..+ .|+.|..+.
T Consensus 186 ~~~fg-~eiel~~~a~~~G~rI~EVp 210 (397)
T 2bo4_A 186 RSDWG-IDTLYTFVTVQQGVSIYECY 210 (397)
T ss_dssp CCSTT-HHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcc-hHHHHHHHHHHcCCEEEEEE
Confidence 33343 466665444 466665443
No 14
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=28.32 E-value=51 Score=22.60 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=21.4
Q ss_pred chhhhhhHhhHHHHHhhhhhHHHHHHHHHHHHh
Q 015562 77 KDIFGEVFKTHNAIQTLDKTISNLEMELAAARA 109 (404)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~le~~l~~~~~ 109 (404)
.|++.++...++ +|+++|..||..|.+-..
T Consensus 8 ydlvsel~~r~e---~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 8 YDMISDLNERSE---DFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH---HHHHHHHHHHHHHHHHHH
Confidence 355555555555 689999999999887654
No 15
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.94 E-value=97 Score=24.23 Aligned_cols=70 Identities=27% Similarity=0.355 Sum_probs=43.9
Q ss_pred EECCCCCHHHHHHHHHHHHhhhhhhhhccccCcEEEEEEeeccCCCCChhHHHHHHHHhhcC---CeeecCCcccccchh
Q 015562 141 INTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHG---DFMRLDHVEGYLELS 217 (404)
Q Consensus 141 V~S~~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~---DiL~ld~~DsY~nLt 217 (404)
|.|+.++.+-|+.|... . .+..-.++||-|.+.+ . -...+.|+++-| |+|-- -.-++|+
T Consensus 31 irtatssqdirdiiksm--k---------dngkplvvfvngasqn---d-vnefqneakkegvsydvlks---tdpeelt 92 (112)
T 2lnd_A 31 IRTATSSQDIRDIIKSM--K---------DNGKPLVVFVNGASQN---D-VNEFQNEAKKEGVSYDVLKS---TDPEELT 92 (112)
T ss_dssp EEEECSHHHHHHHHHHH--T---------TCCSCEEEEECSCCHH---H-HHHHHHHHHHHTCEEEEEEC---CCHHHHH
T ss_pred eeeccchhhHHHHHHHH--H---------hcCCeEEEEecCcccc---c-HHHHHHHHHhcCcchhhhcc---CCHHHHH
Confidence 46777778888887642 2 1233467899998753 2 234566666654 33322 1235689
Q ss_pred HHHHHHHHHHH
Q 015562 218 AKTKIYFATAV 228 (404)
Q Consensus 218 ~Ktl~~~~wa~ 228 (404)
..+..|++.|-
T Consensus 93 qrvreflktag 103 (112)
T 2lnd_A 93 QRVREFLKTAG 103 (112)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcc
Confidence 99999998875
No 16
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=27.73 E-value=70 Score=22.63 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=21.0
Q ss_pred HhhHHHHHhhhhhHHHHHHHHHHHHh
Q 015562 84 FKTHNAIQTLDKTISNLEMELAAARA 109 (404)
Q Consensus 84 ~~~~~~~~~~~~~i~~le~~l~~~~~ 109 (404)
......++.|+|+|..||.+|..++.
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKe 33 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKL 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34445778899999999999998874
No 17
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=24.88 E-value=47 Score=20.88 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHHHHhHHHhccc
Q 015562 15 VSQKWTFLLCLGCFCAGMLFTNR 37 (404)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (404)
++--|+.++.+|+|-..+.+-||
T Consensus 4 vsl~WaalmvvftfSlslVVWGR 26 (29)
T 1vf5_H 4 DVLGWVALLVVFTWSIAMVVWGR 26 (29)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhheeeeEEEEec
Confidence 46679999999999999988777
No 18
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=22.01 E-value=47 Score=21.18 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.1
Q ss_pred cchHHHHHHHHHHHHhHHHhccc
Q 015562 15 VSQKWTFLLCLGCFCAGMLFTNR 37 (404)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (404)
++--|+.++.+|+|-..+.|-||
T Consensus 6 vsl~WaalmvvfTfSlslVVWGR 28 (31)
T 1q90_N 6 VQIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHhheeeEEEEEec
Confidence 45679999999999999998887
Done!