Query 015563
Match_columns 404
No_of_seqs 273 out of 2201
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:29:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00343 triose or hexose phos 100.0 6.8E-39 1.5E-43 313.5 36.2 285 106-391 46-350 (350)
2 TIGR00817 tpt Tpt phosphate/ph 100.0 2.1E-38 4.6E-43 304.9 30.4 285 109-393 2-297 (302)
3 KOG1441 Glucose-6-phosphate/ph 100.0 7.3E-40 1.6E-44 309.3 13.1 286 106-397 14-315 (316)
4 PF08449 UAA: UAA transporter 100.0 1.2E-28 2.6E-33 237.1 30.3 277 113-394 4-302 (303)
5 KOG1444 Nucleotide-sugar trans 100.0 2E-27 4.3E-32 220.0 24.6 283 112-398 15-309 (314)
6 KOG1443 Predicted integral mem 100.0 5E-27 1.1E-31 214.2 19.3 280 107-388 14-314 (349)
7 PLN00411 nodulin MtN21 family 100.0 2.6E-25 5.7E-30 217.2 32.2 281 110-397 14-336 (358)
8 KOG1581 UDP-galactose transpor 99.9 7.6E-25 1.7E-29 200.2 23.9 282 105-393 10-317 (327)
9 KOG1442 GDP-fucose transporter 99.9 2.5E-27 5.4E-32 212.8 5.7 286 110-401 29-339 (347)
10 PRK11689 aromatic amino acid e 99.9 1.7E-23 3.8E-28 200.6 32.4 252 125-391 20-289 (295)
11 PF06027 DUF914: Eukaryotic pr 99.9 5.3E-24 1.2E-28 204.1 25.6 266 122-395 26-311 (334)
12 PRK11272 putative DMT superfam 99.9 1.2E-22 2.6E-27 194.6 34.3 266 114-392 13-288 (292)
13 PRK11453 O-acetylserine/cystei 99.9 1.1E-22 2.4E-27 195.4 33.1 264 123-392 18-290 (299)
14 TIGR00950 2A78 Carboxylate/Ami 99.9 2.2E-22 4.9E-27 189.1 30.0 247 126-384 6-259 (260)
15 PRK10532 threonine and homoser 99.9 2E-22 4.3E-27 193.0 30.1 248 126-393 29-285 (293)
16 KOG1580 UDP-galactose transpor 99.9 1.9E-24 4E-29 190.3 12.8 274 113-393 17-317 (337)
17 PRK15430 putative chlorampheni 99.9 2.4E-21 5.2E-26 185.8 32.2 252 126-394 25-290 (296)
18 KOG4510 Permease of the drug/m 99.9 5.9E-25 1.3E-29 196.9 6.5 272 105-391 35-327 (346)
19 COG5070 VRG4 Nucleotide-sugar 99.9 2.8E-21 6.1E-26 169.0 18.2 277 113-396 10-303 (309)
20 KOG1582 UDP-galactose transpor 99.9 1.4E-20 3E-25 169.1 19.5 280 106-391 40-334 (367)
21 TIGR03340 phn_DUF6 phosphonate 99.8 7.3E-19 1.6E-23 167.4 25.9 253 120-386 12-280 (281)
22 COG0697 RhaT Permeases of the 99.8 1.3E-16 2.8E-21 151.6 33.3 252 125-390 23-288 (292)
23 TIGR00688 rarD rarD protein. T 99.8 2.4E-16 5.2E-21 148.1 29.2 224 124-364 17-255 (256)
24 KOG3912 Predicted integral mem 99.7 4.1E-16 8.9E-21 141.2 22.5 266 126-391 20-336 (372)
25 PF03151 TPT: Triose-phosphate 99.7 4.9E-17 1.1E-21 140.4 15.2 145 245-389 1-153 (153)
26 KOG1583 UDP-N-acetylglucosamin 99.7 7.7E-18 1.7E-22 152.1 9.4 269 127-395 21-320 (330)
27 PF04142 Nuc_sug_transp: Nucle 99.7 3.5E-15 7.6E-20 138.4 21.1 207 166-380 19-244 (244)
28 TIGR00776 RhaT RhaT L-rhamnose 99.7 2.1E-14 4.6E-19 137.2 26.9 243 126-389 18-288 (290)
29 COG2962 RarD Predicted permeas 99.7 1.9E-13 4.2E-18 125.6 30.9 268 113-397 11-291 (293)
30 COG5006 rhtA Threonine/homoser 99.7 2.3E-14 5E-19 128.4 23.7 247 127-392 30-285 (292)
31 KOG2765 Predicted membrane pro 99.7 5.3E-16 1.2E-20 146.0 13.1 215 172-393 167-394 (416)
32 KOG2234 Predicted UDP-galactos 99.7 9.2E-14 2E-18 131.2 27.3 221 166-394 94-327 (345)
33 KOG2766 Predicted membrane pro 99.4 3.4E-14 7.4E-19 127.3 -0.3 257 125-393 34-303 (336)
34 TIGR00803 nst UDP-galactose tr 99.3 1.6E-11 3.4E-16 112.9 11.7 189 188-387 2-222 (222)
35 KOG4314 Predicted carbohydrate 99.2 9.6E-11 2.1E-15 101.5 9.6 215 166-389 55-276 (290)
36 PF00892 EamA: EamA-like trans 99.0 2.1E-09 4.6E-14 88.7 10.5 124 254-388 1-125 (126)
37 COG2510 Predicted membrane pro 99.0 1.8E-09 4E-14 87.3 9.2 135 245-388 4-138 (140)
38 PF00892 EamA: EamA-like trans 99.0 2.5E-09 5.4E-14 88.3 10.3 111 123-235 5-125 (126)
39 PF06800 Sugar_transport: Suga 99.0 1.3E-07 2.7E-12 88.0 22.2 204 167-386 48-268 (269)
40 PF13536 EmrE: Multidrug resis 98.8 3.7E-08 8E-13 80.6 10.7 97 143-240 2-110 (113)
41 COG2510 Predicted membrane pro 98.8 4.7E-08 1E-12 79.2 10.8 112 124-236 18-139 (140)
42 PRK15430 putative chlorampheni 98.8 3.3E-07 7.1E-12 88.0 17.9 141 240-388 4-144 (296)
43 TIGR00688 rarD rarD protein. T 98.8 3.6E-07 7.9E-12 85.7 16.7 140 244-388 2-141 (256)
44 TIGR03340 phn_DUF6 phosphonate 98.6 9.2E-07 2E-11 84.2 15.6 133 246-389 3-135 (281)
45 PLN00411 nodulin MtN21 family 98.5 5E-06 1.1E-10 81.8 16.3 136 244-389 13-156 (358)
46 PF05653 Mg_trans_NIPA: Magnes 98.4 7.7E-07 1.7E-11 85.2 9.2 63 173-235 59-121 (300)
47 TIGR00950 2A78 Carboxylate/Ami 98.4 1.5E-05 3.3E-10 74.6 16.1 110 122-231 141-259 (260)
48 PTZ00343 triose or hexose phos 98.2 4.9E-05 1.1E-09 74.7 16.9 138 242-388 47-185 (350)
49 PRK11689 aromatic amino acid e 98.2 3.4E-05 7.4E-10 74.0 15.0 129 244-388 4-136 (295)
50 PRK02971 4-amino-4-deoxy-L-ara 98.2 3.2E-05 7E-10 64.5 12.7 121 244-392 2-125 (129)
51 PRK13499 rhamnose-proton sympo 98.2 0.0019 4.2E-08 62.7 26.0 222 166-390 75-342 (345)
52 TIGR00817 tpt Tpt phosphate/ph 98.1 8E-05 1.7E-09 71.6 15.7 123 254-387 12-135 (302)
53 PRK11272 putative DMT superfam 98.1 0.0001 2.2E-09 70.5 16.0 130 246-389 10-141 (292)
54 PRK10532 threonine and homoser 98.1 0.00011 2.3E-09 70.4 16.1 112 123-236 162-281 (293)
55 COG2962 RarD Predicted permeas 98.1 0.00017 3.6E-09 67.2 16.0 140 242-390 5-145 (293)
56 PRK15051 4-amino-4-deoxy-L-ara 98.1 2.1E-05 4.6E-10 63.9 8.7 65 172-236 45-109 (111)
57 PRK11453 O-acetylserine/cystei 98.0 0.00017 3.7E-09 69.3 15.1 124 246-388 6-131 (299)
58 PF13536 EmrE: Multidrug resis 97.9 0.00056 1.2E-08 55.7 13.3 71 320-391 37-108 (113)
59 PF03151 TPT: Triose-phosphate 97.8 0.0012 2.5E-08 56.5 14.9 116 120-235 11-152 (153)
60 COG4975 GlcU Putative glucose 97.7 3.9E-06 8.4E-11 75.8 -1.7 236 138-389 28-285 (288)
61 PRK02971 4-amino-4-deoxy-L-ara 97.7 0.0019 4.1E-08 53.9 13.6 72 167-238 51-124 (129)
62 KOG2922 Uncharacterized conser 97.6 7.7E-05 1.7E-09 70.2 5.2 223 167-393 66-310 (335)
63 TIGR00776 RhaT RhaT L-rhamnose 97.5 0.0018 3.9E-08 62.0 13.6 132 245-391 2-138 (290)
64 PRK10452 multidrug efflux syst 97.5 0.0013 2.7E-08 54.1 9.9 72 166-237 32-104 (120)
65 PRK09541 emrE multidrug efflux 97.4 0.0041 9E-08 50.3 12.5 72 166-237 32-104 (110)
66 COG2076 EmrE Membrane transpor 97.4 0.005 1.1E-07 49.0 12.4 72 166-237 32-104 (106)
67 PRK15051 4-amino-4-deoxy-L-ara 97.4 0.0019 4.1E-08 52.5 10.3 57 332-388 52-108 (111)
68 COG0697 RhaT Permeases of the 97.4 0.0093 2E-07 56.2 16.5 140 242-392 5-146 (292)
69 PF08449 UAA: UAA transporter 97.4 0.0067 1.5E-07 58.4 15.4 128 110-237 155-298 (303)
70 PRK10650 multidrug efflux syst 97.3 0.0049 1.1E-07 49.7 10.9 70 166-235 37-107 (109)
71 PRK11431 multidrug efflux syst 97.2 0.0038 8.2E-08 50.1 9.6 71 166-236 31-102 (105)
72 PF06027 DUF914: Eukaryotic pr 97.2 0.013 2.7E-07 57.0 14.5 70 321-390 83-152 (334)
73 PRK13499 rhamnose-proton sympo 96.9 0.027 5.8E-07 54.9 14.4 140 243-392 6-156 (345)
74 COG5006 rhtA Threonine/homoser 96.9 0.026 5.7E-07 51.7 13.1 118 116-234 155-280 (292)
75 PF04657 DUF606: Protein of un 96.9 0.033 7.1E-07 47.1 13.0 130 246-386 3-138 (138)
76 PRK10452 multidrug efflux syst 96.9 0.0049 1.1E-07 50.6 7.7 56 336-391 49-105 (120)
77 PF04142 Nuc_sug_transp: Nucle 96.8 0.0032 6.9E-08 58.6 6.8 76 318-393 18-93 (244)
78 PRK10650 multidrug efflux syst 96.8 0.056 1.2E-06 43.6 13.0 52 336-387 54-106 (109)
79 PRK09541 emrE multidrug efflux 96.7 0.015 3.4E-07 47.0 9.2 57 335-391 48-105 (110)
80 PRK11431 multidrug efflux syst 96.4 0.029 6.2E-07 45.0 9.1 53 336-388 48-101 (105)
81 PF00893 Multi_Drug_Res: Small 96.4 0.026 5.6E-07 44.2 8.6 59 169-227 34-93 (93)
82 COG2076 EmrE Membrane transpor 96.4 0.033 7.1E-07 44.4 8.9 55 336-390 49-104 (106)
83 PF07857 DUF1632: CEO family ( 96.4 0.0042 9.2E-08 57.7 4.4 132 245-394 1-139 (254)
84 TIGR00803 nst UDP-galactose tr 96.3 0.052 1.1E-06 49.6 11.5 68 166-233 154-221 (222)
85 PF06800 Sugar_transport: Suga 96.1 0.12 2.6E-06 48.4 12.9 67 166-232 197-267 (269)
86 KOG2234 Predicted UDP-galactos 96.0 0.45 9.8E-06 45.9 16.1 136 250-388 21-163 (345)
87 KOG4510 Permease of the drug/m 95.8 0.00088 1.9E-08 61.5 -2.9 133 243-389 37-169 (346)
88 PF04657 DUF606: Protein of un 95.8 0.54 1.2E-05 39.7 14.2 108 126-233 18-138 (138)
89 PF05653 Mg_trans_NIPA: Magnes 95.8 0.059 1.3E-06 51.7 9.3 118 241-388 4-121 (300)
90 PF00893 Multi_Drug_Res: Small 95.4 0.23 5E-06 38.8 9.8 46 335-380 47-93 (93)
91 COG3238 Uncharacterized protei 95.3 0.58 1.3E-05 39.8 12.6 137 243-389 4-146 (150)
92 KOG1581 UDP-galactose transpor 94.9 0.48 1E-05 44.8 12.0 124 110-233 173-310 (327)
93 PF10639 UPF0546: Uncharacteri 94.8 0.065 1.4E-06 43.4 5.3 67 167-233 44-111 (113)
94 PF06379 RhaT: L-rhamnose-prot 94.4 1.7 3.7E-05 42.0 14.6 144 243-397 6-161 (344)
95 KOG1441 Glucose-6-phosphate/ph 92.4 0.39 8.4E-06 46.3 6.9 130 106-236 160-307 (316)
96 KOG1580 UDP-galactose transpor 92.2 0.3 6.5E-06 44.4 5.4 69 325-393 93-161 (337)
97 PF10639 UPF0546: Uncharacteri 91.7 1.7 3.6E-05 35.3 8.7 51 336-386 60-111 (113)
98 COG3238 Uncharacterized protei 89.4 13 0.00027 31.8 13.7 110 126-235 22-145 (150)
99 KOG2765 Predicted membrane pro 88.2 1.4 3E-05 42.9 6.5 76 316-391 158-233 (416)
100 KOG4314 Predicted carbohydrate 88.0 0.26 5.6E-06 43.6 1.4 62 331-392 67-128 (290)
101 COG4975 GlcU Putative glucose 86.1 0.2 4.3E-06 45.9 -0.3 135 245-395 3-142 (288)
102 KOG1444 Nucleotide-sugar trans 84.9 25 0.00055 33.7 13.0 130 246-388 14-148 (314)
103 COG3169 Uncharacterized protei 82.8 19 0.00041 28.2 9.1 30 358-387 84-113 (116)
104 PF04342 DUF486: Protein of un 78.8 8.1 0.00018 30.7 6.1 30 357-386 76-105 (108)
105 KOG3912 Predicted integral mem 78.1 16 0.00035 34.5 8.8 63 325-387 94-156 (372)
106 PRK02237 hypothetical protein; 77.6 35 0.00075 27.3 10.8 40 199-238 68-107 (109)
107 KOG2922 Uncharacterized conser 75.0 2.1 4.5E-05 40.9 2.3 120 240-389 17-136 (335)
108 PF02694 UPF0060: Uncharacteri 73.2 46 0.00099 26.6 9.4 40 199-238 66-105 (107)
109 COG5070 VRG4 Nucleotide-sugar 70.9 52 0.0011 30.1 9.9 66 331-396 82-147 (309)
110 KOG1583 UDP-N-acetylglucosamin 66.7 15 0.00033 34.6 5.9 130 106-235 160-313 (330)
111 PF04342 DUF486: Protein of un 62.5 78 0.0017 25.2 8.3 60 174-233 45-105 (108)
112 KOG2766 Predicted membrane pro 62.3 2 4.4E-05 39.7 -0.6 66 321-386 82-147 (336)
113 PRK02237 hypothetical protein; 56.2 21 0.00046 28.5 4.2 45 346-390 62-106 (109)
114 cd01324 cbb3_Oxidase_CcoQ Cyto 53.7 17 0.00037 24.6 2.9 28 374-401 16-43 (48)
115 PF02694 UPF0060: Uncharacteri 52.4 20 0.00044 28.5 3.5 45 346-390 60-104 (107)
116 KOG1582 UDP-galactose transpor 51.0 1.5E+02 0.0033 28.1 9.4 50 189-238 285-334 (367)
117 COG1742 Uncharacterized conser 48.3 23 0.0005 28.1 3.2 38 200-237 68-105 (109)
118 KOG1443 Predicted integral mem 47.0 2.8E+02 0.006 26.8 12.0 50 185-234 264-313 (349)
119 KOG1442 GDP-fucose transporter 45.6 7.6 0.00017 36.4 0.3 111 270-386 58-171 (347)
120 PF11044 TMEMspv1-c74-12: Plec 43.4 57 0.0012 21.5 3.9 9 382-390 21-29 (49)
121 PF06946 Phage_holin_5: Phage 41.4 1.7E+02 0.0037 22.8 7.1 62 336-397 23-88 (93)
122 PF05545 FixQ: Cbb3-type cytoc 41.0 42 0.0009 22.6 3.3 26 374-399 15-40 (49)
123 PF07444 Ycf66_N: Ycf66 protei 40.1 40 0.00087 25.7 3.4 28 368-395 4-31 (84)
124 KOG4831 Unnamed protein [Funct 37.0 40 0.00086 26.9 3.0 63 172-234 60-123 (125)
125 PRK02935 hypothetical protein; 34.7 1E+02 0.0022 24.5 4.9 25 369-393 40-64 (110)
126 COG3169 Uncharacterized protei 34.2 2.3E+02 0.005 22.3 9.9 30 205-234 84-113 (116)
127 COG4657 RnfA Predicted NADH:ub 33.4 3.2E+02 0.007 23.7 9.8 61 207-267 88-155 (193)
128 PF05977 MFS_3: Transmembrane 30.4 6.4E+02 0.014 26.2 15.6 27 338-364 341-367 (524)
129 COG2116 FocA Formate/nitrite f 30.0 2.7E+02 0.0059 26.2 7.8 23 369-391 237-259 (265)
130 PF07168 Ureide_permease: Urei 29.5 46 0.00099 31.9 2.7 138 250-389 2-146 (336)
131 COG3086 RseC Positive regulato 28.7 2.6E+02 0.0055 23.8 6.6 12 359-370 95-106 (150)
132 PF14981 FAM165: FAM165 family 26.5 1.3E+02 0.0028 20.0 3.6 19 377-395 20-38 (51)
133 PRK13387 1,4-dihydroxy-2-napht 24.5 6.4E+02 0.014 24.3 16.9 47 219-265 14-61 (317)
134 PF07857 DUF1632: CEO family ( 24.2 5.9E+02 0.013 23.8 11.7 99 137-235 26-133 (254)
135 COG3162 Predicted membrane pro 23.6 2E+02 0.0043 22.7 4.7 56 102-157 21-82 (102)
136 PF11346 DUF3149: Protein of u 23.2 95 0.0021 20.4 2.5 29 365-393 7-36 (42)
137 COG4858 Uncharacterized membra 22.3 5.6E+02 0.012 22.8 9.9 55 213-267 156-217 (226)
138 PF04971 Lysis_S: Lysis protei 21.3 1.2E+02 0.0027 22.1 3.0 19 380-398 45-63 (68)
139 PF04246 RseC_MucC: Positive r 21.2 2.5E+02 0.0055 23.1 5.5 13 351-363 75-87 (135)
140 PF07123 PsbW: Photosystem II 21.1 1.1E+02 0.0024 25.5 3.1 31 239-269 101-131 (138)
141 PF08627 CRT-like: CRT-like; 20.4 2.4E+02 0.0052 23.3 4.8 40 106-145 54-94 (130)
142 COG3296 Uncharacterized protei 20.3 2.6E+02 0.0056 23.2 5.0 30 222-251 75-104 (143)
143 PF12811 BaxI_1: Bax inhibitor 20.2 7.5E+02 0.016 23.4 22.4 47 188-234 144-190 (274)
No 1
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=6.8e-39 Score=313.50 Aligned_cols=285 Identities=36% Similarity=0.635 Sum_probs=247.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCCC---Cc---c----chHHHHHHHH
Q 015563 106 PALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLP---KR---A----LLIPVAVCHA 175 (404)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~~~~~~---~~---~----~~~~~a~~~~ 175 (404)
.+++...+|+.||.+|+..+++||++++.+|||++++++|++++.+++.+++..+.+ +. + .+++.|+++.
T Consensus 46 ~~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~ 125 (350)
T PTZ00343 46 FKWKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHL 125 (350)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999998887777654432 11 1 6889999998
Q ss_pred HHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHH
Q 015563 176 LGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNIS 255 (404)
Q Consensus 176 ~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~~~~~~G~ll~l~s~l~ 255 (404)
..+...+.|++++++++++++|+++|+++++++++++|||++++++++++++++|++++..+|.++++.|++++++|+++
T Consensus 126 ~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~ 205 (350)
T PTZ00343 126 FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLG 205 (350)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHHHhhcCC-------CChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhh---hhhhhchHHHHHHHHHHHH
Q 015563 256 FTYRSIYSKKAMTD-------MDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSD---AISKVGMVKFISDLFWVGM 325 (404)
Q Consensus 256 ~a~~~v~~kk~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~---~~~~~~~~~~~~~l~~~gl 325 (404)
+++++++.||.+++ +++.++..+..+++.++++|+.+..|++.... .+.+ .........++..++..++
T Consensus 206 ~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~l~~i~~s~l 284 (350)
T PTZ00343 206 SSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVP-VWTNYTANMTNYTKGIIIFKIFFSGV 284 (350)
T ss_pred HHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHhhhcccccchHHHHHHHHHHHH
Confidence 99999999998854 45667777889999999999888777543211 1111 0111122234446777899
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHH
Q 015563 326 FYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 391 (404)
Q Consensus 326 ~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~ 391 (404)
+++++|.+.|.++++++|+++++.+++||++++++|+++|||++|+.+++|.+++++|+++|++.|
T Consensus 285 ~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 285 WYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999763
No 2
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=2.1e-38 Score=304.92 Aligned_cols=285 Identities=62% Similarity=1.011 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCCCCc-----c---chHHHHHHHHHHHHH
Q 015563 109 VTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKR-----A---LLIPVAVCHALGHVT 180 (404)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~~~~~~~~-----~---~~~~~a~~~~~~~~l 180 (404)
.+...++.||.+|++++++||+++++|++|++++++|++++++++.+.+..+.+++ + .+++.|+++..++.+
T Consensus 2 ~~~~~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 81 (302)
T TIGR00817 2 QTGLLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVT 81 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999887776654332211 1 688899999999999
Q ss_pred HHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHH
Q 015563 181 SNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRS 260 (404)
Q Consensus 181 ~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~~~~~~G~ll~l~s~l~~a~~~ 260 (404)
.|.+++|++++++++++++.|+++++++++++|||++++++++++++++|+++....+.+++..|.++++++++++++++
T Consensus 82 ~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~ 161 (302)
T TIGR00817 82 SNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRN 161 (302)
T ss_pred HHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877777788899999999999999999
Q ss_pred HHHHhhcC--CCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHH-HHHHHHHHHHHH
Q 015563 261 IYSKKAMT--DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGM-FYHLYNQLATNT 337 (404)
Q Consensus 261 v~~kk~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~~~ 337 (404)
++.||..+ ++|+.++..|+++++.+.++|+....|++.....++.+..........+...+..++ +...+|...+..
T Consensus 162 v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (302)
T TIGR00817 162 IFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFML 241 (302)
T ss_pred HHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987 899999999999999999999888777644332222111001111122332333333 455667778899
Q ss_pred hhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 015563 338 LERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 393 (404)
Q Consensus 338 l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~ 393 (404)
++++||.++++.+.++|++++++|++++||++++.+++|.+++++|+++|++.|.+
T Consensus 242 l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~ 297 (302)
T TIGR00817 242 LGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ 297 (302)
T ss_pred HccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999976543
No 3
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-40 Score=309.30 Aligned_cols=286 Identities=38% Similarity=0.555 Sum_probs=254.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHhCCCCcc---------chHHHHHHH
Q 015563 106 PALVTGFFFFMWYFLNVIFNILNKRIYN--YFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRA---------LLIPVAVCH 174 (404)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~nK~~l~--~f~~P~~lt~~r~~~~~l~~~~~~~~~~~~~~---------~~~~~a~~~ 174 (404)
+.+.....+..||.+|++.+++||++++ +||||++++.+|++++.+.+...+..+..+++ .++++++++
T Consensus 14 ~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~ 93 (316)
T KOG1441|consen 14 KILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF 93 (316)
T ss_pred hhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH
Confidence 5677888899999999999999999999 89999999999999999988888877654332 789999999
Q ss_pred HHHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHH
Q 015563 175 ALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNI 254 (404)
Q Consensus 175 ~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~~~~~~G~ll~l~s~l 254 (404)
+++++++|.|+.+++++++|++|+++|+++.++++++.+|++++..++++++++.||++++.+|.++|+.|++.++++++
T Consensus 94 ~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~ 173 (316)
T KOG1441|consen 94 CISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNL 173 (316)
T ss_pred HHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcC----CCChhhHHHHHHHHHHHHHH-HHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHH
Q 015563 255 SFTYRSIYSKKAMT----DMDSTNIYAYISIIALFVCI-PPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHL 329 (404)
Q Consensus 255 ~~a~~~v~~kk~~~----~~~~~~~~~~~~~~~~~~l~-~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 329 (404)
..++++++.|++++ ++|+.+++.|+++++.+.++ |+....|+... . .+.. ...... ++..++. .+++++
T Consensus 174 ~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~-~~~~--~~~~~~-~~~~~~~-sv~~f~ 247 (316)
T KOG1441|consen 174 AFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-V-GFLT--APWFVT-FLILLLN-SVLAFL 247 (316)
T ss_pred HHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce-e-eeec--cccchh-hHHHHHH-HHHHHH
Confidence 99999999999883 48999999999999999999 77777776555 1 1111 111222 3333333 499999
Q ss_pred HHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHhhHHH
Q 015563 330 YNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEE 397 (404)
Q Consensus 330 ~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~~~~~ 397 (404)
+|+..|++++++||+|+++.+++|++++++.|+++|++++|+.|.+|+++.++|+++|++.|.+++++
T Consensus 248 ~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 248 LNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred HHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999998876543
No 4
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.97 E-value=1.2e-28 Score=237.12 Aligned_cols=277 Identities=18% Similarity=0.271 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--C-CChHHHHHHHHHHHHHHHHHHHHhCC----CCcc--chHHHHHHHHHHHHHHHh
Q 015563 113 FFFMWYFLNVIFNILNKRIYNY--F-PYPYFVSVIHLLVGVVYCLVSWAVGL----PKRA--LLIPVAVCHALGHVTSNV 183 (404)
Q Consensus 113 ~~~~~~~~~~~~~~~nK~~l~~--f-~~P~~lt~~r~~~~~l~~~~~~~~~~----~~~~--~~~~~a~~~~~~~~l~~~ 183 (404)
++..+|+..+...+++|++.+. . ++|+++++.|+++..+...+...... ++.+ ++++.++++.++..++|.
T Consensus 4 ~~~~i~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (303)
T PF08449_consen 4 CVAGIFGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNA 83 (303)
T ss_pred eHHHHHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777888888886 3 37999999999999887765543322 1222 788999999999999999
Q ss_pred hhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCCc----c------hHHHHHHHHHHH
Q 015563 184 SFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELS----F------NWTGFISAMISN 253 (404)
Q Consensus 184 al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~~----~------~~~G~ll~l~s~ 253 (404)
|++|+|+++.+++|++.|+++++++++++|||++++++++++++++|++++...|.+ . ...|+++++++.
T Consensus 84 al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl 163 (303)
T PF08449_consen 84 ALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSL 163 (303)
T ss_pred HHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998765521 1 124999999999
Q ss_pred HHHHHHHHHHHhhcC--CCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhh-hchHHHHHHHHHHHHHHHHH
Q 015563 254 ISFTYRSIYSKKAMT--DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISK-VGMVKFISDLFWVGMFYHLY 330 (404)
Q Consensus 254 l~~a~~~v~~kk~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gl~~~~~ 330 (404)
++++++.+++||.++ +.+++++++|.+.++++...+.....+.. ++.+.++. ...+..+..++..+++++..
T Consensus 164 ~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~-----~~~~~~~f~~~~p~~~~~l~~~s~~~~~g 238 (303)
T PF08449_consen 164 LLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTG-----EFRSAIRFISAHPSVLLYLLLFSLTGALG 238 (303)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhh-----HhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999985 56788999999999999888877763210 11111111 12234677888889999999
Q ss_pred HHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q 015563 331 NQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQM 394 (404)
Q Consensus 331 ~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~~ 394 (404)
+...+.++++.||++.++++++|+++++++|+++||+++++.+|+|.++++.|+.+|++.|+++
T Consensus 239 ~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 239 QFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999988764
No 5
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2e-27 Score=220.05 Aligned_cols=283 Identities=16% Similarity=0.227 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH--HHHHHHHHHHHHHHHhCCCCc--------cchHHHHHHHHHHHHHH
Q 015563 112 FFFFMWYFLNVIFNILNKRIYNYFPYPYFVSV--IHLLVGVVYCLVSWAVGLPKR--------ALLIPVAVCHALGHVTS 181 (404)
Q Consensus 112 ~~~~~~~~~~~~~~~~nK~~l~~f~~P~~lt~--~r~~~~~l~~~~~~~~~~~~~--------~~~~~~a~~~~~~~~l~ 181 (404)
...+.|..+|+.+.+.||++++.++||..+.. .|.+.+.+.+.+....|..+- ++++|+++++.++++.+
T Consensus 15 ~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~ 94 (314)
T KOG1444|consen 15 LSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTG 94 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHc
Confidence 34456666778888999999999999987776 999999888777766654321 18999999999999999
Q ss_pred HhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHH
Q 015563 182 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSI 261 (404)
Q Consensus 182 ~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~~~~~~G~ll~l~s~l~~a~~~v 261 (404)
..+++|+++++++++|...|+++++.+..++|.|++...|.++..+.+|......+|.++|..|+.+++.+.++.+.+.+
T Consensus 95 ~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v 174 (314)
T KOG1444|consen 95 SKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFVV 174 (314)
T ss_pred cccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc--CCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015563 262 YSKKAM--TDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLE 339 (404)
Q Consensus 262 ~~kk~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~l~ 339 (404)
+.||.. .+.+.+.+++|.++++++.+....+++++.+ + .....+......++..+.++|+++++.+++.+++.+
T Consensus 175 ~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~--~--l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~ 250 (314)
T KOG1444|consen 175 YVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELD--A--LSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTR 250 (314)
T ss_pred HHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchH--H--HHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999876 4578899999999999999998888877654 1 111111222345677899999999999999999999
Q ss_pred ccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 015563 340 RVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEK 398 (404)
Q Consensus 340 ~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~~~~~~ 398 (404)
..|++|.++++......+.+...+++|++.++.+++|..+-+.|..+|++.+.++|+++
T Consensus 251 ~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~ 309 (314)
T KOG1444|consen 251 VNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP 309 (314)
T ss_pred hccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence 99999999999555555555555566778999999999999999999999987755543
No 6
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.95 E-value=5e-27 Score=214.25 Aligned_cols=280 Identities=20% Similarity=0.294 Sum_probs=241.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHh---CCCCcc----------chHHHHHH
Q 015563 107 ALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAV---GLPKRA----------LLIPVAVC 173 (404)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~~~---~~~~~~----------~~~~~a~~ 173 (404)
+.....++++||++|++..+++|+...+|+||.+++.+|+++-.++....... ..++.+ +..|.|+.
T Consensus 14 rV~~L~lVl~yY~~Si~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtala 93 (349)
T KOG1443|consen 14 RVLTLALVLLYYFLSIGLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALA 93 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhh
Confidence 44455566999999999999999999999999999999999887776544322 122211 66799999
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHH
Q 015563 174 HALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISN 253 (404)
Q Consensus 174 ~~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~~~~~~G~ll~l~s~ 253 (404)
.++.+.+.|+++.|++++++++.|++.++|+.+++.++.-||+++.-.+.+.++.+|+.+.++++.++|..|+.+.+++.
T Consensus 94 ta~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS 173 (349)
T KOG1443|consen 94 TALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAAS 173 (349)
T ss_pred hhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCC-----CChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHH---HHHHHHHHHH
Q 015563 254 ISFTYRSIYSKKAMTD-----MDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVK---FISDLFWVGM 325 (404)
Q Consensus 254 l~~a~~~v~~kk~~~~-----~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~---~~~~l~~~gl 325 (404)
++.+++..+.++++++ -+|...+++..+...+.++|..+.+|++..... ...+...+... ....+.+.|.
T Consensus 174 ~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~--s~~f~~~d~~~~~rv~g~i~l~g~ 251 (349)
T KOG1443|consen 174 LLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITS--SSIFRFQDTGLILRVIGLISLGGL 251 (349)
T ss_pred HhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchh--hhHHHhcCccHHHHHHHHHHHHHH
Confidence 9999999888887743 568899999999999999999999999876431 22333333322 3345566677
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 015563 326 FYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 388 (404)
Q Consensus 326 ~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~ 388 (404)
.+++.-.+-|.++.+++.+|.++.+..|.+.+.+++.++.+|.++..+|.|..+.+.|+..|.
T Consensus 252 laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~ 314 (349)
T KOG1443|consen 252 LAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHR 314 (349)
T ss_pred HHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhc
Confidence 888888888999999999999999999999999999999999999999999999999999993
No 7
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.95 E-value=2.6e-25 Score=217.16 Aligned_cols=281 Identities=12% Similarity=0.080 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-hC--C--CCc--c---chHHHHHHHHHHHH
Q 015563 110 TGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWA-VG--L--PKR--A---LLIPVAVCHALGHV 179 (404)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~~-~~--~--~~~--~---~~~~~a~~~~~~~~ 179 (404)
-...++.......+++.+.|..++.--.|+.+.++|+.++++++.++.. .+ . ++. + .+...+++..+...
T Consensus 14 ~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~ 93 (358)
T PLN00411 14 FLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVI 93 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777888888999987444888999999999877665432 21 1 221 1 34555555545556
Q ss_pred HHHhhhccchhhHHHHHHhhhHHHHHHHHHHH------hCcccChhhHHHHHHHHHhhhhhccC-CC-------------
Q 015563 180 TSNVSFAAVAVSFTHTIKALEPFFNAAASQFI------LGQQLPLTLWLSLAPVVIGVSMASLT-EL------------- 239 (404)
Q Consensus 180 l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~------l~e~~s~~~~l~l~l~~~Gv~l~~~~-~~------------- 239 (404)
+.+.+++|++++.+.++.++.|++++++++++ ++||++..+++++++.++|+.+.... +.
T Consensus 94 ~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~ 173 (358)
T PLN00411 94 TGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNF 173 (358)
T ss_pred HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccc
Confidence 89999999999999999999999999999999 69999999999999999999976531 10
Q ss_pred ----------cch-HHHHHHHHHHHHHHHHHHHHHHhhcCCCChh-hHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhh
Q 015563 240 ----------SFN-WTGFISAMISNISFTYRSIYSKKAMTDMDST-NIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDA 307 (404)
Q Consensus 240 ----------~~~-~~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~ 307 (404)
..+ ..|.+++++++++|+++++++|+..+++++. ...+++..++.+.+.++.+..|...... |.
T Consensus 174 ~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~--~~-- 249 (358)
T PLN00411 174 RQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSV--WI-- 249 (358)
T ss_pred cccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCccc--ce--
Confidence 112 4599999999999999999999988777665 5566777777666666666555322111 10
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHH
Q 015563 308 ISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAY 387 (404)
Q Consensus 308 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly 387 (404)
...+. ..+ .+++.+++..+....+++++++.+|...++..++.|++++++|++++||++++.+++|.+++++|+++.
T Consensus 250 -~~~~~-~~~-~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~ 326 (358)
T PLN00411 250 -IHFDI-TLI-TIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAV 326 (358)
T ss_pred -eccch-HHH-HHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 00111 112 244445544445556778999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhHHH
Q 015563 388 SYIKAQMEEE 397 (404)
Q Consensus 388 ~~~~~~~~~~ 397 (404)
++.++++.++
T Consensus 327 ~~~~~~~~~~ 336 (358)
T PLN00411 327 MWGKANEEKD 336 (358)
T ss_pred Hhhhhhhhhh
Confidence 8766655443
No 8
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.94 E-value=7.6e-25 Score=200.24 Aligned_cols=282 Identities=15% Similarity=0.149 Sum_probs=240.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHHHHHHHHhC-C---CCcc--chHHH
Q 015563 105 YPALVTGFFFFMWYFLNVIFNILNKRIYNY--------FPYPYFVSVIHLLVGVVYCLVSWAVG-L---PKRA--LLIPV 170 (404)
Q Consensus 105 ~~~l~~~~~~~~~~~~~~~~~~~nK~~l~~--------f~~P~~lt~~r~~~~~l~~~~~~~~~-~---~~~~--~~~~~ 170 (404)
.+.+++.+++...|...+.+.++++.+.+. |.+|.++.++|-+++.++...+.... . ++.+ ++...
T Consensus 10 ~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~i 89 (327)
T KOG1581|consen 10 NKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLI 89 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHH
Confidence 457788889999999999999999998874 78899999999999888765443221 1 1222 77888
Q ss_pred HHHHHHHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCC---------cc
Q 015563 171 AVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL---------SF 241 (404)
Q Consensus 171 a~~~~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~---------~~ 241 (404)
++...++..+++.||+|+|.++..+.|+|.-+.+|+.+.++.++|++..+++...++..||.++...+. .+
T Consensus 90 s~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~n 169 (327)
T KOG1581|consen 90 SFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGREN 169 (327)
T ss_pred HHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998865421 24
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcC--CCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhh-chHHHHH
Q 015563 242 NWTGFISAMISNISFTYRSIYSKKAMT--DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKV-GMVKFIS 318 (404)
Q Consensus 242 ~~~G~ll~l~s~l~~a~~~v~~kk~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~-~~~~~~~ 318 (404)
+++|+.++..+.+++++.+..|+++.+ +++++.++++.++++++....- ++..+. +.++++.. ..++++.
T Consensus 170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~-li~qg~------~~~av~F~~~hp~~~~ 242 (327)
T KOG1581|consen 170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTY-LILQGH------LLPAVSFIKEHPDVAF 242 (327)
T ss_pred chHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHh-hhcCCC------CchHHHHHHcChhHHH
Confidence 589999999999999999999999985 4789999999999998877764 222221 11222211 2345788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 015563 319 DLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 393 (404)
Q Consensus 319 ~l~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~ 393 (404)
+++..+.++.+.|.+.|..+++.++++..+.++.|++++++++.+.||+++++.||+|..+++.|+.+-.+.|++
T Consensus 243 Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 243 DILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998888877
No 9
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.5e-27 Score=212.76 Aligned_cols=286 Identities=18% Similarity=0.300 Sum_probs=246.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHHHHHh--------CCCCcc-------chHHH
Q 015563 110 TGFFFFMWYFLNVIFNILNKRIYNY----FPYPYFVSVIHLLVGVVYCLVSWAV--------GLPKRA-------LLIPV 170 (404)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~nK~~l~~----f~~P~~lt~~r~~~~~l~~~~~~~~--------~~~~~~-------~~~~~ 170 (404)
.......++.+++.+.+.||++++. .+.|.+.+++|+++...+|..+... ..|+.+ +++|+
T Consensus 29 v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlpl 108 (347)
T KOG1442|consen 29 VDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPL 108 (347)
T ss_pred hhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcch
Confidence 4445667788899999999999996 6789999999999998887764321 122222 88999
Q ss_pred HHHHHHHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCC---CcchHHHHH
Q 015563 171 AVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE---LSFNWTGFI 247 (404)
Q Consensus 171 a~~~~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~---~~~~~~G~l 247 (404)
++.+.+++.++|.+++|++++++++-|++..+|+.+++++++|||-+..-..++.+++.|..+-...| ...++.|++
T Consensus 109 svVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~Gvi 188 (347)
T KOG1442|consen 109 SVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVI 188 (347)
T ss_pred hheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999887776 566899999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC--hhhHHHHHHHHHHHHHHHHHHHhcc-hhhhhcchhhhhhhhchHHHHHHHHHHH
Q 015563 248 SAMISNISFTYRSIYSKKAMTDMD--STNIYAYISIIALFVCIPPAIIVEG-PQLIKHGLSDAISKVGMVKFISDLFWVG 324 (404)
Q Consensus 248 l~l~s~l~~a~~~v~~kk~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~e~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g 324 (404)
+++.+.++-|+..++.||.....+ -|.+.+|+++.++++.+|...+... .....+ ++.....+|..+.++|
T Consensus 189 fGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~------~~l~a~~Fw~~mtLsg 262 (347)
T KOG1442|consen 189 FGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGF------PHLPAIKFWILMTLSG 262 (347)
T ss_pred HHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCc------ccchHHHHHHHHHHHH
Confidence 999999999999999999876654 4688999999999999998776543 222221 1333456899999999
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 015563 325 MFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEKRQM 401 (404)
Q Consensus 325 l~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~~~~~~~~~ 401 (404)
++++.+++...+-++-+||+|+.+..+.|.....++++.+.+|..+...|-|-.+++.|...|++.|..+.+++.++
T Consensus 263 lfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~ 339 (347)
T KOG1442|consen 263 LFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQ 339 (347)
T ss_pred HHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876655443
No 10
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.94 E-value=1.7e-23 Score=200.57 Aligned_cols=252 Identities=12% Similarity=0.044 Sum_probs=186.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHh-CCCCcc--chHHHHHHHHHHHHHHHhhhc----cchhhHHHHHH
Q 015563 125 NILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAV-GLPKRA--LLIPVAVCHALGHVTSNVSFA----AVAVSFTHTIK 197 (404)
Q Consensus 125 ~~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~~~-~~~~~~--~~~~~a~~~~~~~~l~~~al~----~~svs~~~ii~ 197 (404)
....|..++++| |..+.++|+.++.+++.+.... +.++.+ ..+..++.+...+.+.+.+++ +++.....++.
T Consensus 20 ~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~ 98 (295)
T PRK11689 20 VGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVN 98 (295)
T ss_pred HHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 356699999999 9999999999988776654311 111111 233334445566677777765 46777888999
Q ss_pred hhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCC-----------cchHHHHHHHHHHHHHHHHHHHHHHhh
Q 015563 198 ALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL-----------SFNWTGFISAMISNISFTYRSIYSKKA 266 (404)
Q Consensus 198 ~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~-----------~~~~~G~ll~l~s~l~~a~~~v~~kk~ 266 (404)
++.|+++++++++++|||+++++++++++.++|++++..++. ..+..|.+++++++++||.++++.||.
T Consensus 99 ~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~ 178 (295)
T PRK11689 99 YLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKY 178 (295)
T ss_pred HHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999998865432 123569999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHH
Q 015563 267 MTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTH 346 (404)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~l~~~sa~t~ 346 (404)
.++.++..... ..+...+.+.....+.+.. . .+. ..|..+++.++...+....+++++++.++...
T Consensus 179 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~---~-------~~~-~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~ 244 (295)
T PRK11689 179 ARGKNGITLFF---ILTALALWIKYFLSPQPAM---V-------FSL-PAIIKLLLAAAAMGFGYAAWNVGILHGNMTLL 244 (295)
T ss_pred cCCCCchhHHH---HHHHHHHHHHHHHhcCccc---c-------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 87788765432 2233333333332221111 1 111 22334445555555556777899999999999
Q ss_pred HHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHH
Q 015563 347 AVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 391 (404)
Q Consensus 347 sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~ 391 (404)
++..+++|+++++++++++||++++.+++|.++++.|+++....+
T Consensus 245 s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 245 ATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 999999999999999999999999999999999999998775444
No 11
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.93 E-value=5.3e-24 Score=204.07 Aligned_cols=266 Identities=13% Similarity=0.148 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhCCC--------Ccc--chHHHHHHHHHHHHHHHhhhccchh
Q 015563 122 VIFNILNKRIYNY-FPYPYFVSVIHLLVGVVYCLVSWAVGLP--------KRA--LLIPVAVCHALGHVTSNVSFAAVAV 190 (404)
Q Consensus 122 ~~~~~~nK~~l~~-f~~P~~lt~~r~~~~~l~~~~~~~~~~~--------~~~--~~~~~a~~~~~~~~l~~~al~~~sv 190 (404)
.+.+..+..+-+. ++.|.+-+++.++.-.++.......+.. +++ +++.++++...++.+.+.|++|+++
T Consensus 26 ~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsv 105 (334)
T PF06027_consen 26 TGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSV 105 (334)
T ss_pred HhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccH
Confidence 3334555555554 7789998888887655433222221211 122 6888899999999999999999999
Q ss_pred hHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCC---------cchHHHHHHHHHHHHHHHHHHH
Q 015563 191 SFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL---------SFNWTGFISAMISNISFTYRSI 261 (404)
Q Consensus 191 s~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~---------~~~~~G~ll~l~s~l~~a~~~v 261 (404)
+.++++.++..+++++++++++|+|+++.++++++++++|+++....|. +....|.+++++++++||++++
T Consensus 106 tS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV 185 (334)
T PF06027_consen 106 TSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNV 185 (334)
T ss_pred hHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998866552 2348999999999999999999
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015563 262 YSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERV 341 (404)
Q Consensus 262 ~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~l~~~ 341 (404)
++|+..++.+..+...+..+++.++..+...+.|..++....|+. ..+..++..+++.+......-..++..
T Consensus 186 ~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~--------~~~~~~v~~~~~lf~~y~l~p~~l~~s 257 (334)
T PF06027_consen 186 LEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTS--------QVIGLLVGYALCLFLFYSLVPIVLRMS 257 (334)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCCh--------hhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998888877766654433321 223344444444444444455678999
Q ss_pred ChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHhhH
Q 015563 342 APLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQME 395 (404)
Q Consensus 342 sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~~~ 395 (404)
||+..++......+.++++++++||++++|..++|.++++.|+++|+..+.+++
T Consensus 258 sAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~ 311 (334)
T PF06027_consen 258 SATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEE 311 (334)
T ss_pred ccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccc
Confidence 999999988889999999999999999999999999999999999997665543
No 12
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.93 E-value=1.2e-22 Score=194.56 Aligned_cols=266 Identities=15% Similarity=0.125 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCCC---Ccc---chHHHHHHH-HHHHHHHHhhh-
Q 015563 114 FFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLP---KRA---LLIPVAVCH-ALGHVTSNVSF- 185 (404)
Q Consensus 114 ~~~~~~~~~~~~~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~~~~~~---~~~---~~~~~a~~~-~~~~~l~~~al- 185 (404)
.+.-.+.+.......|...++.+ |..++++|++++.+++++....++. +++ .....+.+. ..+..+.+.+.
T Consensus 13 ~~~~~~iWg~~~~~~K~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 91 (292)
T PRK11272 13 LFALYIIWGSTYLVIRIGVESWP-PLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTVAEH 91 (292)
T ss_pred HHHHHHHHhhHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444566799898888 9999999999998776554333221 222 344455553 45677888888
Q ss_pred ccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHHHHH
Q 015563 186 AAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT-ELSFNWTGFISAMISNISFTYRSIYSK 264 (404)
Q Consensus 186 ~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~-~~~~~~~G~ll~l~s~l~~a~~~v~~k 264 (404)
++++++...++.++.|+++++++++ +|||+++++++++++.++|+.+...+ +.+.+..|.+++++++++||.+.++.|
T Consensus 92 ~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~~~ 170 (292)
T PRK11272 92 QNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVWSS 170 (292)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999985 69999999999999999999987644 334567899999999999999999999
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHH-HHHHHHHHHhhccCh
Q 015563 265 KAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYH-LYNQLATNTLERVAP 343 (404)
Q Consensus 265 k~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~~~l~~~sa 343 (404)
|..++ ++.....++...+...+.+.....+.+.....+ ...|..+++.++++. ......++.+++.++
T Consensus 171 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~ 239 (292)
T PRK11272 171 RLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPT----------LSGFLALGYLAVFGSIIAISAYMYLLRNVRP 239 (292)
T ss_pred hcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 97543 445566777777877777765544322111000 122445555565543 334566788899999
Q ss_pred hHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHH
Q 015563 344 LTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 392 (404)
Q Consensus 344 ~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~ 392 (404)
.+.++...++|+++++++++++||++++.+++|.++++.|+++.+..++
T Consensus 240 ~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 240 ALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998876544
No 13
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.93 E-value=1.1e-22 Score=195.35 Aligned_cols=264 Identities=14% Similarity=0.216 Sum_probs=191.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHHH-HHHHHHHHhhhcc-chhhHHHHHHhhh
Q 015563 123 IFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRALLIPVAVCH-ALGHVTSNVSFAA-VAVSFTHTIKALE 200 (404)
Q Consensus 123 ~~~~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~~~~~~~~~~~~~~a~~~-~~~~~l~~~al~~-~svs~~~ii~~~~ 200 (404)
......|..+++++ |..+.++|+.++++.+.+.....+.+++..+..+++. .....+.+.+++| ++++...++.++.
T Consensus 18 ~~~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~ 96 (299)
T PRK11453 18 LNFVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQ 96 (299)
T ss_pred hhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 33345598888888 9999999999877654443322111111344445543 3344566788887 6889999999999
Q ss_pred HHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCC---CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCChh---h
Q 015563 201 PFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE---LSFNWTGFISAMISNISFTYRSIYSKKAMTDMDST---N 274 (404)
Q Consensus 201 Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~---~~~~~~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~---~ 274 (404)
|+++.+++++++|||+++++++++++.++|+.++...+ .+.++.|.+++++++++|+.+.+++||..++.++. .
T Consensus 97 pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~ 176 (299)
T PRK11453 97 AFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMS 176 (299)
T ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhH
Confidence 99999999999999999999999999999999876432 23456799999999999999999999976544433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHH-HHHHHhhccChhHHHHHhHhH
Q 015563 275 IYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQ-LATNTLERVAPLTHAVGNVLK 353 (404)
Q Consensus 275 ~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~l~~~sa~t~sv~~~l~ 353 (404)
...+....+.+.+.......|++......+ ...+ ...|..+++.|++.....+ .+++.+++.++.+.++...++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~ 251 (299)
T PRK11453 177 LVVWSALIPIIPFFVASLILDGSATMIHSL----VTID-MTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLV 251 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhhhhh----ccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444444443333333344432111000 0111 1335666777766665544 456888999999999999999
Q ss_pred HHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHH
Q 015563 354 RVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 392 (404)
Q Consensus 354 ~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~ 392 (404)
|+++.+++++++||++++.+++|.+++++|+++..+.++
T Consensus 252 Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 252 PVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 999999999999999999999999999999998765544
No 14
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.92 E-value=2.2e-22 Score=189.13 Aligned_cols=247 Identities=16% Similarity=0.181 Sum_probs=196.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCCCCcc--chHHHHHH-HHHHHHHHHhhhccchhhHHHHHHhhhHH
Q 015563 126 ILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRA--LLIPVAVC-HALGHVTSNVSFAAVAVSFTHTIKALEPF 202 (404)
Q Consensus 126 ~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~~~~~~~~~--~~~~~a~~-~~~~~~l~~~al~~~svs~~~ii~~~~Pv 202 (404)
+..|+.+++...|..+.+.|++++.+++.+....+.++++ +.+..+.+ +.++..+.+.|++|++++...++.++.|+
T Consensus 6 ~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~ 85 (260)
T TIGR00950 6 VVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRRPPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPL 85 (260)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHH
Confidence 4568988865548999999999988776655444322222 44455544 57888999999999999999999999999
Q ss_pred HHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCC-CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCChh--hHHHHH
Q 015563 203 FNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE-LSFNWTGFISAMISNISFTYRSIYSKKAMTDMDST--NIYAYI 279 (404)
Q Consensus 203 f~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~-~~~~~~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~--~~~~~~ 279 (404)
++++++++++|||++++++.++++.++|+.+....+ .+.+..|++++++++++|+.++++.||..++.++. ....+.
T Consensus 86 ~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~ 165 (260)
T TIGR00950 86 YVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWV 165 (260)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHH
Confidence 999999999999999999999999999999876543 45567899999999999999999999998777754 444466
Q ss_pred HHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHH-HHHHHHHHHhhccChhHHHHHhHhHHHHHH
Q 015563 280 SIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYH-LYNQLATNTLERVAPLTHAVGNVLKRVFVI 358 (404)
Q Consensus 280 ~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~ 358 (404)
..++.+.+.+.....+.+... + ...+..++..++++. ......++++++.++.+.++...++|++++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ 233 (260)
T TIGR00950 166 LLLGALLLLPFAWFLGPNPQA--L----------SLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVAL 233 (260)
T ss_pred HHHHHHHHHHHHHhcCCCCCc--c----------hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 777888777776654322111 0 112444555565543 445566789999999999999999999999
Q ss_pred HHHHHHhCCccchhhHHHHHHHHHHH
Q 015563 359 GFSILAFGNKISTQTGIGTVIAIAGV 384 (404)
Q Consensus 359 i~s~~~f~e~~t~~~~iG~~lvi~Gv 384 (404)
+++++++||++++.+++|..+++.|+
T Consensus 234 ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 234 LLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999986
No 15
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.92 E-value=2e-22 Score=193.03 Aligned_cols=248 Identities=13% Similarity=0.089 Sum_probs=189.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCC--CCcc---chHHHHHHHHHHHHHHHhhhccchhhHHHHHHhhh
Q 015563 126 ILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGL--PKRA---LLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALE 200 (404)
Q Consensus 126 ~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~~~~~--~~~~---~~~~~a~~~~~~~~l~~~al~~~svs~~~ii~~~~ 200 (404)
...|+.+++++ |..+.++|++++.+++.+....++ .+++ ..+..+++......+.+++++|++++.+.++..+.
T Consensus 29 ~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~ 107 (293)
T PRK10532 29 SLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTG 107 (293)
T ss_pred HHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 46799999888 999999999999877765543221 1122 45667777777788899999999999999999999
Q ss_pred HHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccC---CCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHH
Q 015563 201 PFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT---ELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYA 277 (404)
Q Consensus 201 Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~---~~~~~~~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~ 277 (404)
|+++++++. |++... ..+.+.++|+.++... ..+.+..|.+++++++++|+.+.++.||..++.++... .
T Consensus 108 Pi~~~ll~~----~~~~~~--~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~-~ 180 (293)
T PRK10532 108 PLAVALFSS----RRPVDF--VWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYILSGQRAGAEHGPATV-A 180 (293)
T ss_pred HHHHHHHhc----CChHHH--HHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCCchHH-H
Confidence 999998873 555544 4566778998876432 22346789999999999999999999999877777765 4
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHH-HHHHHhhccChhHHHHHhHhHHHH
Q 015563 278 YISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQ-LATNTLERVAPLTHAVGNVLKRVF 356 (404)
Q Consensus 278 ~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~l~~~sa~t~sv~~~l~~v~ 356 (404)
+...++...+.|+....+. .. .+ +. ..+..+++.|++.....+ ..++.+++.++...++...++|++
T Consensus 181 ~~~~~~~~~l~~~~~~~~~-~~---~~-------~~-~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~ 248 (293)
T PRK10532 181 IGSLIAALIFVPIGALQAG-EA---LW-------HW-SILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPAL 248 (293)
T ss_pred HHHHHHHHHHHHHHHHccC-cc---cC-------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHH
Confidence 5666777777776554332 11 01 11 123344566666554444 557889999999999999999999
Q ss_pred HHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 015563 357 VIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 393 (404)
Q Consensus 357 ~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~ 393 (404)
+.+++++++||++++.+++|.+++++|++.+.+..++
T Consensus 249 a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 249 AAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999866544
No 16
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.9e-24 Score=190.27 Aligned_cols=274 Identities=15% Similarity=0.133 Sum_probs=223.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-----------CCChHHHHHHHHHHHHHHHHHHHHhCC-CC--c-c--chHHHHHHHH
Q 015563 113 FFFMWYFLNVIFNILNKRIYNY-----------FPYPYFVSVIHLLVGVVYCLVSWAVGL-PK--R-A--LLIPVAVCHA 175 (404)
Q Consensus 113 ~~~~~~~~~~~~~~~nK~~l~~-----------f~~P~~lt~~r~~~~~l~~~~~~~~~~-~~--~-~--~~~~~a~~~~ 175 (404)
+....+.+-..+.+.++.+... |.|...+.+.|+.+..++.-++...+. .+ + + .+...++.|.
T Consensus 17 ca~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~~~YaAcs~sYL 96 (337)
T KOG1580|consen 17 CAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTEIDNTPTKMYAACSASYL 96 (337)
T ss_pred EecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccccccCCcchHHHHHHHHHH
Confidence 3333334445566777777652 788899999999988887654433222 11 1 1 6778888899
Q ss_pred HHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCCc-------chHHHHHH
Q 015563 176 LGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELS-------FNWTGFIS 248 (404)
Q Consensus 176 ~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~~-------~~~~G~ll 248 (404)
+.++..|.+++|++.++..+-|+|.|+.+|+++.++.+++++|+++..++.++.||+++.+.+.. .-..|-++
T Consensus 97 lAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElL 176 (337)
T KOG1580|consen 97 LAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELL 176 (337)
T ss_pred HHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887532 23578899
Q ss_pred HHHHHHHHHHHHHHHHhhcCC--CChhhHHHHHHHHHHHHHHHHHHHh-cchhhhhcchhhhhhhhchHHHHHHHHHHHH
Q 015563 249 AMISNISFTYRSIYSKKAMTD--MDSTNIYAYISIIALFVCIPPAIIV-EGPQLIKHGLSDAISKVGMVKFISDLFWVGM 325 (404)
Q Consensus 249 ~l~s~l~~a~~~v~~kk~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~-e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 325 (404)
.++|...+++....++++... .+...++.|+++.+.+.+....++. |.+.+.... ...+..|+.+...++
T Consensus 177 L~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~-------~RhP~~~~~l~l~ai 249 (337)
T KOG1580|consen 177 LILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFV-------QRHPYVFWDLTLLAI 249 (337)
T ss_pred HHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHH-------HhccHHHHHHHHHHH
Confidence 999999999999999998744 4566899999999988776655544 334443321 223456888999999
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 015563 326 FYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 393 (404)
Q Consensus 326 ~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~ 393 (404)
++.+.|++.|+.+...+|++.|++++.++.++++.|+++|+++++..||+|..+++.|..+-....++
T Consensus 250 ~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~ 317 (337)
T KOG1580|consen 250 ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKK 317 (337)
T ss_pred HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999876654443
No 17
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.91 E-value=2.4e-21 Score=185.83 Aligned_cols=252 Identities=13% Similarity=0.095 Sum_probs=180.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-hCC-C-------Ccc--c-hHHHHHHHHHHHHHHHhhhccchhhHH
Q 015563 126 ILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWA-VGL-P-------KRA--L-LIPVAVCHALGHVTSNVSFAAVAVSFT 193 (404)
Q Consensus 126 ~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~~-~~~-~-------~~~--~-~~~~a~~~~~~~~l~~~al~~~svs~~ 193 (404)
...|.. .+.+ |..+.++|++++.+++.++.. ++. + +++ . .+..++..+.++.+.++++++++++.+
T Consensus 25 ~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a 102 (296)
T PRK15430 25 AYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEA 102 (296)
T ss_pred HHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 444775 5577 999999999998875544332 221 1 111 1 223344567789999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCC--C
Q 015563 194 HTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDM--D 271 (404)
Q Consensus 194 ~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~~~~~~G~ll~l~s~l~~a~~~v~~kk~~~~~--~ 271 (404)
.++.++.|+++++++++++|||+++++|+++++.++|++++...+.+.. .++++++++|+++.++.||...+. +
T Consensus 103 ~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i~~r~~~~~~~~~ 178 (296)
T PRK15430 103 SLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLP----IIALGLAFSFAFYGLVRKKIAVEAQTG 178 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 9999999999999999999999999999999999999998764332222 467888999999999999875322 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhH
Q 015563 272 STNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNV 351 (404)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~ 351 (404)
......|..+++.+...+. .+.+ ... +. .... ..+..++..|+...+.+.+.++.+++.+|...++..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~---~~~~-~~~--~~----~~~~-~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~ 247 (296)
T PRK15430 179 MLIETMWLLPVAAIYLFAI---ADSS-TSH--MG----QNPM-SLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQY 247 (296)
T ss_pred HHHHHHHHHHHHHHHHHHH---ccCC-ccc--cc----CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2223334444443332221 1111 000 00 0001 1123344455555566777789999999999999999
Q ss_pred hHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q 015563 352 LKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQM 394 (404)
Q Consensus 352 l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~~ 394 (404)
++|+++++++++++||++++.+++|++++++|+.+.......-
T Consensus 248 l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~~~ 290 (296)
T PRK15430 248 IGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYT 290 (296)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877655443
No 18
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.91 E-value=5.9e-25 Score=196.89 Aligned_cols=272 Identities=18% Similarity=0.173 Sum_probs=224.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH---HH---hCC-CCccchHHHHHHHHHH
Q 015563 105 YPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVS---WA---VGL-PKRALLIPVAVCHALG 177 (404)
Q Consensus 105 ~~~l~~~~~~~~~~~~~~~~~~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~---~~---~~~-~~~~~~~~~a~~~~~~ 177 (404)
++...+.+..+. |++|.++.+..|.+.+ .|..+.-.|+++-.+...++ .. .+. .+|.++++.++..+.+
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~---~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tg 110 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEN---DPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTG 110 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhcc---ChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhH
Confidence 344455555555 7888888888887776 58888888877766554332 21 122 2344889999999999
Q ss_pred HHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCC--------------CcchH
Q 015563 178 HVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE--------------LSFNW 243 (404)
Q Consensus 178 ~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~--------------~~~~~ 243 (404)
..+.|+|++|++.+++.+|..+.|+|+.+++|.++||+++.+..++..+.+.||+++.... .+.+.
T Consensus 111 vmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~ 190 (346)
T KOG4510|consen 111 VMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDI 190 (346)
T ss_pred HHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999874321 13356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHH
Q 015563 244 TGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWV 323 (404)
Q Consensus 244 ~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (404)
.|...++.+.++-|...++.|++.++.|....+.|.++++++..+.....+...++.+++.+ |..++..
T Consensus 191 ~gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkd-----------r~l~~~l 259 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKD-----------RWLFVNL 259 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCccccc-----------eEEEEEe
Confidence 89999999999999999999999999999999999999998887776655555555554322 3456778
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHH
Q 015563 324 GMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 391 (404)
Q Consensus 324 gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~ 391 (404)
|+++++.|....+.+++..+...++.++.+.++++++.+++|||-+|++.|+|+++++....+....|
T Consensus 260 GvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 260 GVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred hhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887766544
No 19
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.88 E-value=2.8e-21 Score=168.99 Aligned_cols=277 Identities=15% Similarity=0.195 Sum_probs=234.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHhC-----CCCccchHHHHHHHHHHHHHHHhhh
Q 015563 113 FFFMWYFLNVIFNILNKRIYNY--FPYPYFVSVIHLLVGVVYCLVSWAVG-----LPKRALLIPVAVCHALGHVTSNVSF 185 (404)
Q Consensus 113 ~~~~~~~~~~~~~~~nK~~l~~--f~~P~~lt~~r~~~~~l~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~l~~~al 185 (404)
..+.|.+.++.+.+.||++++. |+--+.+.+.|.+++.+.+.++...+ ..+.+.++|.+++...+++...-++
T Consensus 10 ~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~MIyt~SKsL 89 (309)
T COG5070 10 ASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVVMIYTSSKSL 89 (309)
T ss_pred HHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHHHHHhcccce
Confidence 3466777889999999999996 66567888899988887666655433 2333389999999999999999999
Q ss_pred ccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCC--------cchHHHHHHHHHHHHHHH
Q 015563 186 AAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL--------SFNWTGFISAMISNISFT 257 (404)
Q Consensus 186 ~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~--------~~~~~G~ll~l~s~l~~a 257 (404)
+|.+++.+++.|.++.+.++....+++|.|.+-....+.+++++.-+.+.++|. ..| .|++|+..+++..+
T Consensus 90 qyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm~~Nclssa 168 (309)
T COG5070 90 QYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWMFTNCLSSA 168 (309)
T ss_pred eeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEEehhhHhHH
Confidence 999999999999999999999999999999999999999999999999988885 334 59999999999999
Q ss_pred HHHHHHHhhc--CCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 015563 258 YRSIYSKKAM--TDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLAT 335 (404)
Q Consensus 258 ~~~v~~kk~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 335 (404)
.+-...||.. .+....+.++|.+++++++++.+.+++|++....- .. .. .......++.+|++.++..++.-
T Consensus 169 afVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~--an---nl-~~d~l~am~ISgl~svgiSy~sa 242 (309)
T COG5070 169 AFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNL--AN---NL-SVDSLMAMFISGLCSVGISYCSA 242 (309)
T ss_pred HHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchh--hc---CC-ChHHHHHHHHHHHHHhhhhhccc
Confidence 9988877654 45667789999999999999999999987654311 11 01 11224567889999999999999
Q ss_pred HHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHhhHH
Q 015563 336 NTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEE 396 (404)
Q Consensus 336 ~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~~~~ 396 (404)
|+++.+|++++++++.+.+....+.|.++||++.+...+..+.+-+....+|.+.+.++++
T Consensus 243 WcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q 303 (309)
T COG5070 243 WCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQ 303 (309)
T ss_pred eeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999988766443
No 20
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.87 E-value=1.4e-20 Score=169.13 Aligned_cols=280 Identities=16% Similarity=0.174 Sum_probs=228.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhc--C-CChHHHHHHHHHHHHHHHHHHHHhCCCCc-----cchHHHHHHHHHH
Q 015563 106 PALVTGFFFFMWYFLNVIFNILNKRIYNY--F-PYPYFVSVIHLLVGVVYCLVSWAVGLPKR-----ALLIPVAVCHALG 177 (404)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~nK~~l~~--f-~~P~~lt~~r~~~~~l~~~~~~~~~~~~~-----~~~~~~a~~~~~~ 177 (404)
+..+..+++...++.-+...++++++++. | ||.|.+|+.|+++-..+.++....-.+++ +.+..++.+..+.
T Consensus 40 kw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t~gt 119 (367)
T KOG1582|consen 40 KWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLTVGT 119 (367)
T ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhhhhc
Confidence 34455555666666677888999999996 5 48899999999886554443321111121 1677788888889
Q ss_pred HHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCC----CcchHHHHHHHHHHH
Q 015563 178 HVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE----LSFNWTGFISAMISN 253 (404)
Q Consensus 178 ~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~----~~~~~~G~ll~l~s~ 253 (404)
+.+.|-++.|.+.++..+.|+|..+.+++.+.++-|+|+++.++.+..++.+|.+++.+.| .+||..|+.+.-++.
T Consensus 120 mGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgAL 199 (367)
T KOG1582|consen 120 MGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGAL 199 (367)
T ss_pred cccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998877 478999999999999
Q ss_pred HHHHHHHHHHHhhcC--CCChhhHHHHHHHHHHHHHHHHHHHhcc-hhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHH
Q 015563 254 ISFTYRSIYSKKAMT--DMDSTNIYAYISIIALFVCIPPAIIVEG-PQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLY 330 (404)
Q Consensus 254 l~~a~~~v~~kk~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~e~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 330 (404)
+++|+-.-.|+|.++ +.+..++.+|...++.++++.+.....+ ...++. +.+. ....+...+..++.+++.
T Consensus 200 l~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~f-----caeh-p~~tyGy~~~~s~~gylG 273 (367)
T KOG1582|consen 200 LADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTF-----CAEH-PVRTYGYAFLFSLAGYLG 273 (367)
T ss_pred HHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHH-----HHhC-cHhHHHHHHHHHHHhHhh
Confidence 999999989999874 4556789999999999888877766532 222211 1111 223466777788888888
Q ss_pred HHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHH
Q 015563 331 NQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 391 (404)
Q Consensus 331 ~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~ 391 (404)
+.+....++..++.+.+.+++.++.+++++|.++|.+++|.+..-|..+++.|+++-.+.|
T Consensus 274 ~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 274 IVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 8888889999999999999999999999999999999999999999999999999876665
No 21
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.84 E-value=7.3e-19 Score=167.41 Aligned_cols=253 Identities=15% Similarity=0.186 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhC-----CCC--cc---chHHHHHHHHHHHHHHHhhhccch
Q 015563 120 LNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVG-----LPK--RA---LLIPVAVCHALGHVTSNVSFAAVA 189 (404)
Q Consensus 120 ~~~~~~~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~~~~-----~~~--~~---~~~~~a~~~~~~~~l~~~al~~~s 189 (404)
+....+..+|...++-+ +. .++++.+++++..+....+ .+. +. ..+..++.....+.+.+.++++.+
T Consensus 12 ~~a~~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (281)
T TIGR03340 12 MHAGWNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHAD 88 (281)
T ss_pred HHHHHHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33455667786666522 32 3555555555444332221 111 11 223344456778889999999999
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCC-CcchHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015563 190 VSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE-LSFNWTGFISAMISNISFTYRSIYSKKAMT 268 (404)
Q Consensus 190 vs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~-~~~~~~G~ll~l~s~l~~a~~~v~~kk~~~ 268 (404)
++...++.++.|+++++++++++|||+++++|+++.+++.|+.+....+ ...+..|..++++++++|+.+.++.|+..+
T Consensus 89 ~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~i~~k~~~~ 168 (281)
T TIGR03340 89 VGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYSLSDKAAAL 168 (281)
T ss_pred hhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhhhcccccc
Confidence 9999999999999999999999999999999999999999999876543 234567888999999999999999998765
Q ss_pred CCChhh-HHHHHHHHHHHHH-HHHHHHh---cchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Q 015563 269 DMDSTN-IYAYISIIALFVC-IPPAIIV---EGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAP 343 (404)
Q Consensus 269 ~~~~~~-~~~~~~~~~~~~l-~~~~l~~---e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~l~~~sa 343 (404)
+.++.. ...+. ..+.... .|..... +...... .....+..+...++...+.+...++.+++.++
T Consensus 169 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a 237 (281)
T TIGR03340 169 GVPAFYSALGYL-GIGFLAMGWPFLLLYLKRHGRSMFP----------YARQILPSATLGGLMIGGAYALVLWAMTRLPV 237 (281)
T ss_pred chhcccccHHHH-HHHHHHHHHHHHHHHHHHhccchhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 555432 22221 1222211 2222211 1110000 00112333444445455556677889999999
Q ss_pred hHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHH
Q 015563 344 LTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAA 386 (404)
Q Consensus 344 ~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~l 386 (404)
...+....+.|+++++++++++||++++.+++|.++++.|+.+
T Consensus 238 ~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 238 ATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred eEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 9999999999999999999999999999999999999999875
No 22
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.81 E-value=1.3e-16 Score=151.57 Aligned_cols=252 Identities=19% Similarity=0.222 Sum_probs=184.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCC----CC-cc--c-hHHHHHHHHHHHHHHHhhhccchhhHHHHH
Q 015563 125 NILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGL----PK-RA--L-LIPVAVCHALGHVTSNVSFAAVAVSFTHTI 196 (404)
Q Consensus 125 ~~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~~~~~----~~-~~--~-~~~~a~~~~~~~~l~~~al~~~svs~~~ii 196 (404)
....|....+..-+......|++++.+........+. +. ++ . .+...+.......+.+.++++++++..+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (292)
T COG0697 23 FIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLI 102 (292)
T ss_pred HHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 3444565555332556666699888776433333221 11 11 2 333344456778899999999999999999
Q ss_pred HhhhHHHHHHHHH-HHhCcccChhhHHHHHHHHHhhhhhccCCCcc---hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCh
Q 015563 197 KALEPFFNAAASQ-FILGQQLPLTLWLSLAPVVIGVSMASLTELSF---NWTGFISAMISNISFTYRSIYSKKAMTDMDS 272 (404)
Q Consensus 197 ~~~~Pvf~~l~s~-l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~~~---~~~G~ll~l~s~l~~a~~~v~~kk~~~~~~~ 272 (404)
.++.|+++.++++ ++++||++++++.++++.+.|+.++...+... +..|.++++.++++++++.++.|+.. +.++
T Consensus 103 ~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~ 181 (292)
T COG0697 103 IGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLS-RLGP 181 (292)
T ss_pred HHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCh
Confidence 9999999999997 77799999999999999999999998766544 35899999999999999999999987 6666
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHH-HHHHHHHHHhhccChhHHHHHh
Q 015563 273 TNIYA-YISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYH-LYNQLATNTLERVAPLTHAVGN 350 (404)
Q Consensus 273 ~~~~~-~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~~~l~~~sa~t~sv~~ 350 (404)
..... +..........+. ..+... .... ...+..+...|++.. ..+...++.+++.++...++..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~----------~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 248 (292)
T COG0697 182 VTLALLLQLLLALLLLLLF--FLSGFG-APIL----------SRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLS 248 (292)
T ss_pred HHHHHHHHHHHHHHHHHHH--Hhcccc-ccCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 66655 3333111222221 111111 1111 112445566666655 3566778899999999999999
Q ss_pred HhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHH
Q 015563 351 VLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 390 (404)
Q Consensus 351 ~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~ 390 (404)
.+.++++++++++++||+++..+++|..+++.|+.+....
T Consensus 249 ~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 249 LLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999998866
No 23
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.79 E-value=2.4e-16 Score=148.06 Aligned_cols=224 Identities=10% Similarity=0.018 Sum_probs=156.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH-HhCC----------CCcc----chHHHHHHHHHHHHHHHhhhccc
Q 015563 124 FNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSW-AVGL----------PKRA----LLIPVAVCHALGHVTSNVSFAAV 188 (404)
Q Consensus 124 ~~~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~-~~~~----------~~~~----~~~~~a~~~~~~~~l~~~al~~~ 188 (404)
.....|. ..+.+ |..+.++|++++.+++.+.. ..++ ++++ .+...+++..++..+.+++++++
T Consensus 17 ~~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~ 94 (256)
T TIGR00688 17 MYYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWAVNNG 94 (256)
T ss_pred HHHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3345687 45577 99999999999887654432 2221 1111 24455666788899999999999
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015563 189 AVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMT 268 (404)
Q Consensus 189 svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~~~~~~G~ll~l~s~l~~a~~~v~~kk~~~ 268 (404)
+++.++++.++.|+++++++++++|||+++++++++++.++|+++...++.+.+ .++++++++|+.+.++.|+..+
T Consensus 95 ~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i~~~~~~~ 170 (256)
T TIGR00688 95 SSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAFSFTAYGLIRKALKN 170 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999997754322222 3578899999999999998753
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHH
Q 015563 269 DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAV 348 (404)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~l~~~sa~t~sv 348 (404)
.+..+.... .....+...+..+..+.+.... ......|..++..|++..+.+...++.+++.++...++
T Consensus 171 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~ 239 (256)
T TIGR00688 171 -TDLAGFCLE-TLSLMPVAIYYLLQTDFATVQQ---------TNPFPIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGL 239 (256)
T ss_pred -CCcchHHHH-HHHHHHHHHHHHHHhccCcccc---------cCchhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 233322211 1222222222111111111000 00111244555666666666777889999999999999
Q ss_pred HhHhHHHHHHHHHHHH
Q 015563 349 GNVLKRVFVIGFSILA 364 (404)
Q Consensus 349 ~~~l~~v~~~i~s~~~ 364 (404)
..+++|+++.+++++.
T Consensus 240 ~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 240 LQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999864
No 24
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.75 E-value=4.1e-16 Score=141.16 Aligned_cols=266 Identities=17% Similarity=0.200 Sum_probs=200.1
Q ss_pred HHHHHHHhc-------CCChHHHHHHHHHHHHHHHHHHHHhC----C----------------CCcc-chHHHHHHHHHH
Q 015563 126 ILNKRIYNY-------FPYPYFVSVIHLLVGVVYCLVSWAVG----L----------------PKRA-LLIPVAVCHALG 177 (404)
Q Consensus 126 ~~nK~~l~~-------f~~P~~lt~~r~~~~~l~~~~~~~~~----~----------------~~~~-~~~~~a~~~~~~ 177 (404)
+..||.-+. |.+|+..+..-|+--++++..+...+ . |-++ ..++.++|...+
T Consensus 20 l~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~g 99 (372)
T KOG3912|consen 20 LVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAG 99 (372)
T ss_pred HHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhh
Confidence 567887763 78898877665553333322322211 0 1111 567789999999
Q ss_pred HHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCC----------CcchHHHHH
Q 015563 178 HVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE----------LSFNWTGFI 247 (404)
Q Consensus 178 ~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~----------~~~~~~G~l 247 (404)
..+.|.++.+++++.+|+++....+|+.+++..+++++++.+||+++..+.+|++.+...| .+.-+.|.+
T Consensus 100 sslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdl 179 (372)
T KOG3912|consen 100 SSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDL 179 (372)
T ss_pred hHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhhH
Confidence 9999999999999999999999999999999999999999999999999999999886553 233478999
Q ss_pred HHHHHHHHHHHHHHHHHhhcC--CCChhhHHHHHHHHHHHHHHHHHHHhcc---h-hhh------hcchhhhhhhhchHH
Q 015563 248 SAMISNISFTYRSIYSKKAMT--DMDSTNIYAYISIIALFVCIPPAIIVEG---P-QLI------KHGLSDAISKVGMVK 315 (404)
Q Consensus 248 l~l~s~l~~a~~~v~~kk~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~e~---~-~~~------~~~~~~~~~~~~~~~ 315 (404)
+.+++-+.-|.+.++.+|..+ +++|.+...|..+++.+.+......+.. + .+. -.+|.+++...+-..
T Consensus 180 lIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p 259 (372)
T KOG3912|consen 180 LIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESP 259 (372)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCc
Confidence 999999999999999998874 5889999999999996655544443321 1 111 123444443333222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHH
Q 015563 316 -FISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 391 (404)
Q Consensus 316 -~~~~l~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~ 391 (404)
....+...-+.-..+|+......+..|++|-.+...++..+..++++....|.++..|+.|.++.+.|+++|+..-
T Consensus 260 ~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~il 336 (372)
T KOG3912|consen 260 SLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQIL 336 (372)
T ss_pred hhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222222233457777777799999999999999999999999999999999999999999999999998543
No 25
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.74 E-value=4.9e-17 Score=140.44 Aligned_cols=145 Identities=32% Similarity=0.465 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-------CCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhc-hHHH
Q 015563 245 GFISAMISNISFTYRSIYSKKAMT-------DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVG-MVKF 316 (404)
Q Consensus 245 G~ll~l~s~l~~a~~~v~~kk~~~-------~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~-~~~~ 316 (404)
|++++++|+++.++++++.|+.++ +.|+.+++.|+++.+.+.++|.++..|+++.........-.... ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 789999999999999999998773 46889999999999999999999999887754432111100111 3356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHH
Q 015563 317 ISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 389 (404)
Q Consensus 317 ~~~l~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~ 389 (404)
+..++..|++++++|+..+.+++++||+++++.+.+|+++.+++|+++|||++|+.+++|+++.+.|+++|+|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 7788899999999999999999999999999999999999999999999999999999999999999999975
No 26
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.74 E-value=7.7e-18 Score=152.15 Aligned_cols=269 Identities=14% Similarity=0.127 Sum_probs=201.5
Q ss_pred HHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHH-HhC--CCCcc--chHHHHHHHHHHHHHHHhhhcc-chhhHHHHHHhh
Q 015563 127 LNKRIYNYFP-YPYFVSVIHLLVGVVYCLVSW-AVG--LPKRA--LLIPVAVCHALGHVTSNVSFAA-VAVSFTHTIKAL 199 (404)
Q Consensus 127 ~nK~~l~~f~-~P~~lt~~r~~~~~l~~~~~~-~~~--~~~~~--~~~~~a~~~~~~~~l~~~al~~-~svs~~~ii~~~ 199 (404)
.-+.+.+..| .-..+|+.||++-++-.+++. .+. +|+-+ .+...-..+....+++|+++++ ++.+...++|+.
T Consensus 21 ~lE~L~~~~pgsgNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsg 100 (330)
T KOG1583|consen 21 FLELLVRNEPGSGNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSG 100 (330)
T ss_pred HHHHHHHhCCCCeeehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEecC
Confidence 3466666555 347899999998777655442 111 12222 4555555556667889999986 899999999999
Q ss_pred hHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccC---CCc--------------ch--HHHHHHHHHHHHHHHHHH
Q 015563 200 EPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT---ELS--------------FN--WTGFISAMISNISFTYRS 260 (404)
Q Consensus 200 ~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~---~~~--------------~~--~~G~ll~l~s~l~~a~~~ 260 (404)
.++.+|+++++++|+|++.+|+.+++++.+|+++.++. |.. +- ..|+.+..++.+..|.-.
T Consensus 101 sll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mg 180 (330)
T KOG1583|consen 101 SLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMG 180 (330)
T ss_pred cHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986432 110 11 368888889999999999
Q ss_pred HHHHhhcCC--CChhhHHHHHHHHHHHHHHHHHH-Hhcch-hhhhcc-hhhhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 015563 261 IYSKKAMTD--MDSTNIYAYISIIALFVCIPPAI-IVEGP-QLIKHG-LSDAISKVGMVKFISDLFWVGMFYHLYNQLAT 335 (404)
Q Consensus 261 v~~kk~~~~--~~~~~~~~~~~~~~~~~l~~~~l-~~e~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 335 (404)
++++...++ -++-+.++|....++++.+...- +...+ .....+ ..-.......+..|..++...+..+++.-..|
T Consensus 181 iyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy 260 (330)
T KOG1583|consen 181 IYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVY 260 (330)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhh
Confidence 999988765 46679999999888765543211 00000 011110 00000011245568889999999999988889
Q ss_pred HHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHhhH
Q 015563 336 NTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQME 395 (404)
Q Consensus 336 ~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~~~ 395 (404)
.+-.+++++|.+++-++|+.+..++|+++|+++++++.|+|..+++.|..+|+....+.|
T Consensus 261 ~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~~ 320 (330)
T KOG1583|consen 261 ILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHPK 320 (330)
T ss_pred hhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 999999999999999999999999999999999999999999999999999997665544
No 27
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.69 E-value=3.5e-15 Score=138.44 Aligned_cols=207 Identities=15% Similarity=0.191 Sum_probs=162.6
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCC------
Q 015563 166 LLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL------ 239 (404)
Q Consensus 166 ~~~~~a~~~~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~------ 239 (404)
++...+++|.+++.+.+.++++++++++++++++..+++++++++++|+|++..||+++.+.++|+++...++.
T Consensus 19 ~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~ 98 (244)
T PF04142_consen 19 KLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNS 98 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccccc
Confidence 66778999999999999999999999999999999999999999999999999999999999999998743321
Q ss_pred -----------cchHHHHHHHHHHHHHHHHHHHHHHhhcCCC--ChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhh
Q 015563 240 -----------SFNWTGFISAMISNISFTYRSIYSKKAMTDM--DSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSD 306 (404)
Q Consensus 240 -----------~~~~~G~ll~l~s~l~~a~~~v~~kk~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~ 306 (404)
.....|+++.++++++.++..++.+|.+|+- +.+......+.+|.++.++.....++....+.++.+
T Consensus 99 ~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~ 178 (244)
T PF04142_consen 99 SSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFH 178 (244)
T ss_pred cccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchh
Confidence 1136899999999999999999999999764 455556666777777766655444443333322211
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHH
Q 015563 307 AISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIA 380 (404)
Q Consensus 307 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lv 380 (404)
..+. ..|..++..++.|.... ..+|+.+.+.-.....+..+++.++++++||.+++....+|..++
T Consensus 179 ---G~~~-~~~~~i~~~a~gGllva----~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 179 ---GYSW-WVWIVIFLQAIGGLLVA----FVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred ---hcch-HHHHHHHHHHHhhHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 1111 23444455555554443 345999999999999999999999999999999999999998753
No 28
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.69 E-value=2.1e-14 Score=137.20 Aligned_cols=243 Identities=19% Similarity=0.208 Sum_probs=173.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HHhCCCCc--cchHHHH----HHHHHHHHHHHhhhccchhhHHHHHHh
Q 015563 126 ILNKRIYNYFPYPYFVSVIHLLVGVVYCLVS-WAVGLPKR--ALLIPVA----VCHALGHVTSNVSFAAVAVSFTHTIKA 198 (404)
Q Consensus 126 ~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~-~~~~~~~~--~~~~~~a----~~~~~~~~l~~~al~~~svs~~~ii~~ 198 (404)
...|++. .++.++.. +..++.++...+ ...+.+++ +..++.+ ++...++.+.+.+.++++++.+..+-+
T Consensus 18 ~~~k~~~-g~~~~~~~---~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~ 93 (290)
T TIGR00776 18 LINVKIG-GGPYSQTL---GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPIST 93 (290)
T ss_pred HHHhccC-CCHHHHHH---HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHH
Confidence 3446554 45534333 566666554432 22333322 3444434 446777899999999999999998888
Q ss_pred -hhHHHHHHHHHHHhCcccChhh----HHHHHHHHHhhhhhccCCCc-------ch-HHHHHHHHHHHHHHHHHHHHHHh
Q 015563 199 -LEPFFNAAASQFILGQQLPLTL----WLSLAPVVIGVSMASLTELS-------FN-WTGFISAMISNISFTYRSIYSKK 265 (404)
Q Consensus 199 -~~Pvf~~l~s~l~l~e~~s~~~----~l~l~l~~~Gv~l~~~~~~~-------~~-~~G~ll~l~s~l~~a~~~v~~kk 265 (404)
+.++++.+++.+++||+.++++ +++++++++|+++....+.+ .+ ..|+++++++.++|+++.+..|+
T Consensus 94 ~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~ 173 (290)
T TIGR00776 94 GFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLLMSTIGYLVYVVVAKA 173 (290)
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999 99999999999987654311 33 78999999999999999999998
Q ss_pred hcCCCChhhHHHHHH---HHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhh-cc
Q 015563 266 AMTDMDSTNIYAYIS---IIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLE-RV 341 (404)
Q Consensus 266 ~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~l~-~~ 341 (404)
. +.||.+....+. .++.....+... ...+ + .....+. .+..|++....+...+...+ +.
T Consensus 174 ~--~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~------~-------~~~~~~~-~~~~Gi~~~ia~~~y~~~~~~~~ 236 (290)
T TIGR00776 174 F--GVDGLSVLLPQAIGMVIGGIIFNLGHI-LAKP------L-------KKYAILL-NILPGLMWGIGNFFYLFSAQPKV 236 (290)
T ss_pred c--CCCcceehhHHHHHHHHHHHHHHHHHh-cccc------h-------HHHHHHH-HHHHHHHHHHHHHHHHHHccccc
Confidence 6 478887744333 333333322220 0011 0 0112232 33377774444555567778 99
Q ss_pred ChhHHHHHhHhHHHHHHHHHHHHhCCccchhhH----HHHHHHHHHHHHHHH
Q 015563 342 APLTHAVGNVLKRVFVIGFSILAFGNKISTQTG----IGTVIAIAGVAAYSY 389 (404)
Q Consensus 342 sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~----iG~~lvi~Gv~ly~~ 389 (404)
++.+.++...++|+++.+++++++||+.+..++ +|.++++.|+.+...
T Consensus 237 ~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 237 GVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999 999999999987654
No 29
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.68 E-value=1.9e-13 Score=125.65 Aligned_cols=268 Identities=13% Similarity=0.146 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH--hCC------CCcc----chHHHHHHHHHHHHH
Q 015563 113 FFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWA--VGL------PKRA----LLIPVAVCHALGHVT 180 (404)
Q Consensus 113 ~~~~~~~~~~~~~~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~~--~~~------~~~~----~~~~~a~~~~~~~~l 180 (404)
..+.-|.....+-++.|.+. ..| +..+...|.+.+..++.+... ++. .+.+ .....+++-+.+...
T Consensus 11 ~~l~Ay~lwG~lp~y~kll~-~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~nW~l 88 (293)
T COG2962 11 LALLAYLLWGLLPLYFKLLE-PLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGLNWWL 88 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHc-cCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555656644 466 788889999888776553322 111 1112 445556666788889
Q ss_pred HHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHH
Q 015563 181 SNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRS 260 (404)
Q Consensus 181 ~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~~~~~~G~ll~l~s~l~~a~~~ 260 (404)
..++..+-.+-.++.=-...|++.++++.+++|||+++.||+++.+..+||..-.....+++|..+.+ +++|++|.
T Consensus 89 fiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~l----a~sf~~Yg 164 (293)
T COG2962 89 FIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALAL----ALSFGLYG 164 (293)
T ss_pred hheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH----HHHHHHHH
Confidence 99999998888888888899999999999999999999999999999999999888888888866655 45889998
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchh-hhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015563 261 IYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQ-LIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLE 339 (404)
Q Consensus 261 v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~l~ 339 (404)
..-|+. ++|+.+-.+.-.+.-.+..+...+..+... +.. ......+..++..|....+--.......+
T Consensus 165 l~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~---------~~~~~~~~LLv~aG~vTavpL~lf~~aa~ 233 (293)
T COG2962 165 LLRKKL--KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQ---------QNANSLWLLLVLAGLVTAVPLLLFAAAAK 233 (293)
T ss_pred HHHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhh---------cCCchHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 777766 677777666665555555554444443322 111 01122355677777765544333345668
Q ss_pred ccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHhhHHH
Q 015563 340 RVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEE 397 (404)
Q Consensus 340 ~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~~~~~ 397 (404)
+.+=.+.++..++.|....+++++++||+++..+.+..+++-.|..+|+...-+.+++
T Consensus 234 ~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~ 291 (293)
T COG2962 234 RLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARK 291 (293)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999999999999999999999999999999999877654443
No 30
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.68 E-value=2.3e-14 Score=128.43 Aligned_cols=247 Identities=16% Similarity=0.174 Sum_probs=194.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH---hCC--CCccchHHHHHHHHHHHHHHHhhhccchhhHHHHHHhhhH
Q 015563 127 LNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWA---VGL--PKRALLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEP 201 (404)
Q Consensus 127 ~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~~---~~~--~~~~~~~~~a~~~~~~~~l~~~al~~~svs~~~ii~~~~P 201 (404)
+.|.++..+. |.-.+++|..+++++++..+. .+. +++..+...++....++.+.|.+++.++.+....+-++-|
T Consensus 30 ~Ak~LFP~vG-~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GP 108 (292)
T COG5006 30 FAKSLFPLVG-AAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGP 108 (292)
T ss_pred HHHHHccccC-hhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccH
Confidence 3477777777 899999999999987665532 111 1222777788888899999999999999999999999999
Q ss_pred HHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCC---CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHH
Q 015563 202 FFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE---LSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAY 278 (404)
Q Consensus 202 vf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~---~~~~~~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~ 278 (404)
+.+++++ .+|. ++...+.+.+.|..+..-.. .+.|..|..+++.+..||+.|.+..||.-+..+...-+.+
T Consensus 109 L~vA~~~----sRr~--~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~ 182 (292)
T COG5006 109 LAVALLS----SRRL--RDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAV 182 (292)
T ss_pred HHHHHHh----ccch--hhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHH
Confidence 9888765 3333 45555666777877664332 5678999999999999999999999999777778888888
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHH-HHHHHhhccChhHHHHHhHhHHHHH
Q 015563 279 ISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQ-LATNTLERVAPLTHAVGNVLKRVFV 357 (404)
Q Consensus 279 ~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~l~~~sa~t~sv~~~l~~v~~ 357 (404)
-+.++.++.+|+.....++.+.. +.+....+..+++....-+ .-...+++.++-++++...++|.++
T Consensus 183 gm~vAaviv~Pig~~~ag~~l~~------------p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~a 250 (292)
T COG5006 183 GMLVAALIVLPIGAAQAGPALFS------------PSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALA 250 (292)
T ss_pred HHHHHHHHHhhhhhhhcchhhcC------------hHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHH
Confidence 88999999999887665555432 2234455666777666543 4478889999999999999999999
Q ss_pred HHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHH
Q 015563 358 IGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 392 (404)
Q Consensus 358 ~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~ 392 (404)
.+.+++++||.+|+.||+|+++++.+..-.+...+
T Consensus 251 Al~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~ 285 (292)
T COG5006 251 ALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTAR 285 (292)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccC
Confidence 99999999999999999999999998875544433
No 31
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.67 E-value=5.3e-16 Score=146.03 Aligned_cols=215 Identities=18% Similarity=0.252 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCC--------cchH
Q 015563 172 VCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL--------SFNW 243 (404)
Q Consensus 172 ~~~~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~--------~~~~ 243 (404)
.+.....++.|.||.+++++..+++.++.-+|+.+++.++..||+++.+.+++++.++|+++++.++. +...
T Consensus 167 ~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~l 246 (416)
T KOG2765|consen 167 PLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPL 246 (416)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchh
Confidence 33457889999999999999999999999999999999999999999999999999999999987742 3347
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC----CChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHH
Q 015563 244 TGFISAMISNISFTYRSIYSKKAMTD----MDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISD 319 (404)
Q Consensus 244 ~G~ll~l~s~l~~a~~~v~~kk~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~ 319 (404)
.|.++++.+++.||.|.++.||...+ +|-..+..|..++.++++.|..++.+.-....++... ..+ ...
T Consensus 247 lG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~------~~q-~~~ 319 (416)
T KOG2765|consen 247 LGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPS------STQ-FSL 319 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCC------Cce-eEe
Confidence 99999999999999999999998743 5566777788888888888877765432222222111 011 123
Q ss_pred HHHHHHH-HHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 015563 320 LFWVGMF-YHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 393 (404)
Q Consensus 320 l~~~gl~-~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~ 393 (404)
++..++. .++-.+.|.++.-.++|++..+...+...++++.++++-|.++|+.+++|...+++|.+..++....
T Consensus 320 vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 320 VVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred eeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 3444444 4455788888889999999999999999999999999999999999999999999999998876544
No 32
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.66 E-value=9.2e-14 Score=131.24 Aligned_cols=221 Identities=13% Similarity=0.148 Sum_probs=176.8
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCC-------
Q 015563 166 LLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE------- 238 (404)
Q Consensus 166 ~~~~~a~~~~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~------- 238 (404)
++...+++|++.+-+.+.++.+.+++++++..++..+.++++..++++||.+++||.++++.++|+++.-...
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~ 173 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAK 173 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 6677788999988899999999999999999999999999999999999999999999999999999885211
Q ss_pred ----CcchHHHHHHHHHHHHHHHHHHHHHHhhcCC--CChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhc
Q 015563 239 ----LSFNWTGFISAMISNISFTYRSIYSKKAMTD--MDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVG 312 (404)
Q Consensus 239 ----~~~~~~G~ll~l~s~l~~a~~~v~~kk~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~ 312 (404)
....+.|+...+.++...++-++|.+|++++ .+-|....-.+.+|.++.+...+..++.... |.+.+...+
T Consensus 174 ~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~---~~gff~G~s 250 (345)
T KOG2234|consen 174 SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAIN---EYGFFYGYS 250 (345)
T ss_pred CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccc---cCCcccccc
Confidence 1235799999999999999999999999955 5555555556667777666665555554432 222222222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHH
Q 015563 313 MVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 392 (404)
Q Consensus 313 ~~~~~~~l~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~ 392 (404)
. ..|..++..++.|....+.. ++.+-..-.....+..+++.+.|+.+||.++|....+|+.+++..+.+|+..+.
T Consensus 251 ~-~vw~vVl~~a~gGLlvs~v~----KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~ 325 (345)
T KOG2234|consen 251 S-IVWLVVLLNAVGGLLVSLVM----KYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPA 325 (345)
T ss_pred H-HHHHHHHHHhccchhHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCc
Confidence 1 24666666677666665544 888888888888899999999999999999999999999999999999996665
Q ss_pred hh
Q 015563 393 QM 394 (404)
Q Consensus 393 ~~ 394 (404)
+.
T Consensus 326 ~~ 327 (345)
T KOG2234|consen 326 RD 327 (345)
T ss_pred cc
Confidence 54
No 33
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.40 E-value=3.4e-14 Score=127.26 Aligned_cols=257 Identities=10% Similarity=0.076 Sum_probs=194.6
Q ss_pred HHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhCCCC----ccchHHHHHHHHHHHHHHHhhhccchhhHHHHHHhh
Q 015563 125 NILNKRIYNY-FPYPYFVSVIHLLVGVVYCLVSWAVGLPK----RALLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKAL 199 (404)
Q Consensus 125 ~~~nK~~l~~-f~~P~~lt~~r~~~~~l~~~~~~~~~~~~----~~~~~~~a~~~~~~~~l~~~al~~~svs~~~ii~~~ 199 (404)
++.+.++-.. .+-|..-+++....-+++--.+...+++. .++++++++...-++++-..|.+|++....+.+.+-
T Consensus 34 a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcw 113 (336)
T KOG2766|consen 34 AFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCW 113 (336)
T ss_pred hhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHh
Confidence 3444444443 67898888887765554433333332221 126777788777777777889999999999999999
Q ss_pred hHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCC--------CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 015563 200 EPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE--------LSFNWTGFISAMISNISFTYRSIYSKKAMTDMD 271 (404)
Q Consensus 200 ~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~--------~~~~~~G~ll~l~s~l~~a~~~v~~kk~~~~~~ 271 (404)
..+.+++++|+++|-|+.+.++.++++++.|+++...+| .+....|..+.++++-+||..|+..+.+.++.|
T Consensus 114 aip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d 193 (336)
T KOG2766|consen 114 AIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD 193 (336)
T ss_pred hhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHhcCc
Confidence 999999999999999999999999999999999876554 234578999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhH
Q 015563 272 STNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNV 351 (404)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~ 351 (404)
..+++....+++.++..+- ++.|..+...-.|+.. ....+...++-++..-..-..++..|++.+++.-.
T Consensus 194 ~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~---------i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslL 263 (336)
T KOG2766|consen 194 RVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSA---------IFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLL 263 (336)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHH---------HHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHh
Confidence 9999999999999988876 5555544433222211 12222234444444444456778889988888888
Q ss_pred hHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 015563 352 LKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 393 (404)
Q Consensus 352 l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~ 393 (404)
...+.+++. ..||-+++|...+....+..|.++|+.+++.
T Consensus 264 TsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~~ 303 (336)
T KOG2766|consen 264 TSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREKD 303 (336)
T ss_pred HHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccccC
Confidence 888888887 7788889999999999999999999654443
No 34
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.31 E-value=1.6e-11 Score=112.89 Aligned_cols=189 Identities=17% Similarity=0.167 Sum_probs=134.0
Q ss_pred chhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCC---------------------------c
Q 015563 188 VAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL---------------------------S 240 (404)
Q Consensus 188 ~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~---------------------------~ 240 (404)
++++.....|++.++++++..+.+.++|++..++++.+++..|+......+. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 5788899999999999999999999999999999999999999885322210 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHH-HH---hcchh-hhhcchhhhhhhhchHH
Q 015563 241 FNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPA-II---VEGPQ-LIKHGLSDAISKVGMVK 315 (404)
Q Consensus 241 ~~~~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~-l~---~e~~~-~~~~~~~~~~~~~~~~~ 315 (404)
..+.|....+.+.++.++..+++++..++.+. +.|...+++.+..++. .. ..... ....+. ..+.+.
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 153 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDT---MFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGF-----FIGYPT 153 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCC---chHHHHHHHHHHHHHHHHHHHhhcccchhhccCc-----ccCCch
Confidence 34678888888999999999999998765432 2444444443333222 11 11111 111110 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHH
Q 015563 316 FISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAY 387 (404)
Q Consensus 316 ~~~~l~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly 387 (404)
. .+...+.....+.+..+.+++.++.+.++...++++++.++|+++|||+++..+++|..+++.|+++|
T Consensus 154 ~---~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 154 A---VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred H---HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 1 11222333334455677889999999999999999999999999999999999999999999998775
No 35
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.19 E-value=9.6e-11 Score=101.46 Aligned_cols=215 Identities=14% Similarity=0.090 Sum_probs=167.2
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCC--CcchH
Q 015563 166 LLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE--LSFNW 243 (404)
Q Consensus 166 ~~~~~a~~~~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~--~~~~~ 243 (404)
+..|.+++..+..+.+..+++.++++.++.+.+|.-.|+.+++++.+|+|+...++++.++.+.|+++.++.| ....+
T Consensus 55 ~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~ 134 (290)
T KOG4314|consen 55 RTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEI 134 (290)
T ss_pred eecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhh
Confidence 5677788888999999999999999999999999999999999999999999999999999999999998765 35579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHH----HHH-HHHhcchhhhhcchhhhhhhhchHHHHH
Q 015563 244 TGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVC----IPP-AIIVEGPQLIKHGLSDAISKVGMVKFIS 318 (404)
Q Consensus 244 ~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l----~~~-~l~~e~~~~~~~~~~~~~~~~~~~~~~~ 318 (404)
.|+.++.+|+...|+|.+..|+...+-+--+...+++..+..-+ .|. .+.+.+-+- |++. +. .-|.
T Consensus 135 iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~----~qsF-A~----~PWG 205 (290)
T KOG4314|consen 135 IGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEH----LQSF-AA----APWG 205 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHH----HHHH-hh----CCch
Confidence 99999999999999999999998866554444444444443222 121 111222111 1110 11 1255
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHH
Q 015563 319 DLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 389 (404)
Q Consensus 319 ~l~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~ 389 (404)
.+...+.+....|+.....+....|...|+............+.++-+-..+...+.|..++..|..+...
T Consensus 206 ~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiii 276 (290)
T KOG4314|consen 206 CLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIII 276 (290)
T ss_pred hhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheec
Confidence 66666666667777777777889999999999888888888998877778899999999999999887654
No 36
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.03 E-value=2.1e-09 Score=88.70 Aligned_cols=124 Identities=21% Similarity=0.234 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHH-HHHHHH
Q 015563 254 ISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMF-YHLYNQ 332 (404)
Q Consensus 254 l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~ 332 (404)
++|+.+.++.|+..++.|+.....+....+.+ +++.....+..+... .... .+......+++ ....+.
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~ 69 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKN---------LSPR-QWLWLLFLGLLGTALAYL 69 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccC---------CChh-hhhhhhHhhccceehHHH
Confidence 46889999999999999999999999999987 666655554432111 1111 13334444544 456677
Q ss_pred HHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 015563 333 LATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 388 (404)
Q Consensus 333 ~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~ 388 (404)
..+..+++.++...++...+.|+++.++++++++|++++.+++|+++++.|+++.+
T Consensus 70 ~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 70 LYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999998764
No 37
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.02 E-value=1.8e-09 Score=87.26 Aligned_cols=135 Identities=21% Similarity=0.185 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHH
Q 015563 245 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVG 324 (404)
Q Consensus 245 G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 324 (404)
-.++++++++++++..++.|-..+++||..-...-++....++..+.+....++.... .+ ...|..++.+|
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~--------~~-~k~~lflilSG 74 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGE--------IG-PKSWLFLILSG 74 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccc--------cC-cceehhhhHHH
Confidence 4678999999999999999999999999988888888888877776665543332210 01 12366788899
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 015563 325 MFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 388 (404)
Q Consensus 325 l~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~ 388 (404)
+.+-+..++.|++++.-.+-...-..-..+++++++|+++++|++|..+++|++++.+|..+.+
T Consensus 75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 8888888888999999888888888888999999999999999999999999999999987643
No 38
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.01 E-value=2.5e-09 Score=88.26 Aligned_cols=111 Identities=19% Similarity=0.371 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HHhC-CC--Cc--c---chHHHHHH-HHHHHHHHHhhhccchhhH
Q 015563 123 IFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVS-WAVG-LP--KR--A---LLIPVAVC-HALGHVTSNVSFAAVAVSF 192 (404)
Q Consensus 123 ~~~~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~-~~~~-~~--~~--~---~~~~~a~~-~~~~~~l~~~al~~~svs~ 192 (404)
...+++|+..++++ |...+++|+.++.+ +.+. ...+ .+ +. + ..+..+++ ..++..+.+.++++++++.
T Consensus 5 ~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 82 (126)
T PF00892_consen 5 IYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASI 82 (126)
T ss_pred eHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhH
Confidence 34567899999888 99999999999986 3322 2221 11 11 1 45556666 4788999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhc
Q 015563 193 THTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 235 (404)
Q Consensus 193 ~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~ 235 (404)
.+++..++|+++.+++++++||++++.++++++++++|++++.
T Consensus 83 ~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 83 VSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764
No 39
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.00 E-value=1.3e-07 Score=88.04 Aligned_cols=204 Identities=19% Similarity=0.179 Sum_probs=149.5
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhHHHHH-HhhhHHHHHHHHHHHhCcccChhhH----HHHHHHHHhhhhhccCCCcc
Q 015563 167 LIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLW----LSLAPVVIGVSMASLTELSF 241 (404)
Q Consensus 167 ~~~~a~~~~~~~~l~~~al~~~svs~~~ii-~~~~Pvf~~l~s~l~l~e~~s~~~~----l~l~l~~~Gv~l~~~~~~~~ 241 (404)
-+.-+++..+++...+.|++++.++.+.-+ .....+.+.+++.++++|.-+..++ ++++++++|+++.+.+|.+.
T Consensus 48 ~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~ 127 (269)
T PF06800_consen 48 AFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKS 127 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccc
Confidence 345577788999999999999999888766 5788888999999999998776665 48899999999988765322
Q ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhch
Q 015563 242 --------NWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGM 313 (404)
Q Consensus 242 --------~~~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~ 313 (404)
...|++..+++.+.|..|.+..|. .++|+++...-+++-..+-.+.+.+..+.+... +..
T Consensus 128 ~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~~---------k~~- 195 (269)
T PF06800_consen 128 DKSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHVSGWSAFLPQAIGMLIGAFIFNLFSKKPFFE---------KKS- 195 (269)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCCChhHhHHHHHHHHHHHHHHHhhcccccccc---------cch-
Confidence 256999999999999999999776 367888777766543333333332222111110 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchh----hHHHHHHHHHHHHH
Q 015563 314 VKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQ----TGIGTVIAIAGVAA 386 (404)
Q Consensus 314 ~~~~~~l~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~----~~iG~~lvi~Gv~l 386 (404)
..-+..|++....|.+.+...++.+..+.-...-+..+++.+.+++++||+-+.. .++|.++++.|..+
T Consensus 196 ----~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 196 ----WKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred ----HHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 1224456666666777777778888888777888889999999999999988755 56788888877653
No 40
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.83 E-value=3.7e-08 Score=80.58 Aligned_cols=97 Identities=20% Similarity=0.351 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHH-HHhCCC--------Ccc--chHHHHHHHH-HHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHH
Q 015563 143 VIHLLVGVVYCLVS-WAVGLP--------KRA--LLIPVAVCHA-LGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF 210 (404)
Q Consensus 143 ~~r~~~~~l~~~~~-~~~~~~--------~~~--~~~~~a~~~~-~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l 210 (404)
.+|++++.+.+... ...+.. +++ +.+..+++.. .+..+.++|+++.+ +....+.++.|+++++++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 46777776655432 222211 111 4445566664 78899999999999 68889999999999999999
Q ss_pred HhCcccChhhHHHHHHHHHhhhhhccCCCc
Q 015563 211 ILGQQLPLTLWLSLAPVVIGVSMASLTELS 240 (404)
Q Consensus 211 ~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~~ 240 (404)
++|||++++++++++++++|+++...+|.+
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999887754
No 41
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.82 E-value=4.7e-08 Score=79.18 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH-HhCCCC------cc---chHHHHHHHHHHHHHHHhhhccchhhHH
Q 015563 124 FNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSW-AVGLPK------RA---LLIPVAVCHALGHVTSNVSFAAVAVSFT 193 (404)
Q Consensus 124 ~~~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~-~~~~~~------~~---~~~~~a~~~~~~~~l~~~al~~~svs~~ 193 (404)
..++.|..+++.+ |.+-++.|.++..+++.... ..|..+ ++ .+..-|+....+..+++.+++..+++..
T Consensus 18 ~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~as~V 96 (140)
T COG2510 18 TPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRV 96 (140)
T ss_pred HHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceE
Confidence 3467799999888 99999999999887766443 333211 12 4444566677889999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhcc
Q 015563 194 HTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 236 (404)
Q Consensus 194 ~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~ 236 (404)
.-+..+.|+++.+++++++|||++..+|+++.++++|+++.+.
T Consensus 97 vPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 97 VPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred EEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 9999999999999999999999999999999999999988653
No 42
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.80 E-value=3.3e-07 Score=88.00 Aligned_cols=141 Identities=16% Similarity=0.131 Sum_probs=107.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHH
Q 015563 240 SFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISD 319 (404)
Q Consensus 240 ~~~~~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~ 319 (404)
+....|.++.++++++|+...++.|.. .+++|.++..+...++.+++++............ ... ..... +..
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~----~~~--~~~~~-~~~ 75 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLK----TLI--QTPQK-IFM 75 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHH----HHH--cCHHH-HHH
Confidence 345689999999999999999999865 7799999999999999887776554332111100 000 01111 222
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 015563 320 LFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 388 (404)
Q Consensus 320 l~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~ 388 (404)
.+..++.....+.+.++.++++++...++...+.|+++.++++++++|+++..+++|.++.+.|+.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 76 LAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 233344445567777899999999999999999999999999999999999999999999999998764
No 43
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.77 E-value=3.6e-07 Score=85.71 Aligned_cols=140 Identities=17% Similarity=0.252 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHH
Q 015563 244 TGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWV 323 (404)
Q Consensus 244 ~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (404)
.|+++.++++++|+...+..|. ..++++.++.++-.+++.+.+.+..............+ +.......+..+...
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 76 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERL----KRIQKRPLILSLLLC 76 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHH----hCcccchHHHHHHHH
Confidence 4889999999999999999998 46799999999999999877766544332211100000 001111223345666
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 015563 324 GMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 388 (404)
Q Consensus 324 gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~ 388 (404)
|++....+.+.+..++++++...++...+.|+++.++++++++|+++..+++|.++.++|+.+..
T Consensus 77 g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 77 GLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 66666677778899999999999999999999999999999999999999999999999988653
No 44
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.64 E-value=9.2e-07 Score=84.21 Aligned_cols=133 Identities=11% Similarity=0.029 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHH
Q 015563 246 FISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGM 325 (404)
Q Consensus 246 ~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 325 (404)
+++.++++++++.+++..|+..++.++. ..+......+.+.|+......... +.. . ....+..++..++
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~----~~~----~-~~~~~~~~~~~~~ 71 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQVG----WSR----L-PATFWLLLAISAV 71 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhcccCC----CCC----c-chhhHHHHHHHHH
Confidence 5678999999999999999887764443 355555666666665544211111 110 0 0112334555666
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHH
Q 015563 326 FYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 389 (404)
Q Consensus 326 ~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~ 389 (404)
....+..+.++.+++.++...++.....|+++.++++++++|+++..+++|.++++.|+.+...
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 6777777888899999999999999999999999999999999999999999999999987653
No 45
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.49 E-value=5e-06 Score=81.75 Aligned_cols=136 Identities=13% Similarity=0.207 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-CCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhh-cchhhhhhhhchHHHHHHHH
Q 015563 244 TGFISAMISNISFTYRSIYSKKAM-TDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIK-HGLSDAISKVGMVKFISDLF 321 (404)
Q Consensus 244 ~G~ll~l~s~l~~a~~~v~~kk~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~-~~~~~~~~~~~~~~~~~~l~ 321 (404)
.-++.++..-++|+..+++.|..+ ..+++....+|-..++.++++++.+..+.....+ ..+ ..+..+.
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~----------~~~~~l~ 82 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSV----------SILSKIG 82 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchH----------HHHHHHH
Confidence 456677788899999999999887 4699999999999999888888776654211111 011 1244556
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHH------hCCccchhhHHHHHHHHHHHHHHHH
Q 015563 322 WVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILA------FGNKISTQTGIGTVIAIAGVAAYSY 389 (404)
Q Consensus 322 ~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~------f~e~~t~~~~iG~~lvi~Gv~ly~~ 389 (404)
..|+++..++...+..++.+++...++...+.|+++.++++++ ++|+++..+++|.++.++|+.+...
T Consensus 83 l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 83 LLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 6777665666677889999999999999999999999999999 6999999999999999999987553
No 46
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.45 E-value=7.7e-07 Score=85.23 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhc
Q 015563 173 CHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 235 (404)
Q Consensus 173 ~~~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~ 235 (404)
++.++..++..|+.+.|.+..+-+.+...++.++++.+++|||++++++.++++++.|.+++.
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 456788899999999999999999999999999999999999999999999999999998653
No 47
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.38 E-value=1.5e-05 Score=74.58 Aligned_cols=110 Identities=21% Similarity=0.171 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHh-CCCCc-c-----chHHHHHHH-HHHHHHHHhhhccchhhH
Q 015563 122 VIFNILNKRIYNYFP-YPYFVSVIHLLVGVVYCLVSWAV-GLPKR-A-----LLIPVAVCH-ALGHVTSNVSFAAVAVSF 192 (404)
Q Consensus 122 ~~~~~~nK~~l~~f~-~P~~lt~~r~~~~~l~~~~~~~~-~~~~~-~-----~~~~~a~~~-~~~~~l~~~al~~~svs~ 192 (404)
....++.|+..++.+ .+.....+++.++.+++.+.... +.+.. . .++..+++. .++..+.+.++++++++.
T Consensus 141 a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 220 (260)
T TIGR00950 141 ALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSA 220 (260)
T ss_pred HHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence 445566788877654 23455557888887776654332 22211 1 244455553 578889999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhh
Q 015563 193 THTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGV 231 (404)
Q Consensus 193 ~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv 231 (404)
..++..++|++++++++++++|+++..++.++.+++.|+
T Consensus 221 ~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 221 ASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999986
No 48
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.25 E-value=4.9e-05 Score=74.69 Aligned_cols=138 Identities=13% Similarity=0.068 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHH
Q 015563 242 NWTGFISAMISNISFTYRSIYSKKAMTDMD-STNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDL 320 (404)
Q Consensus 242 ~~~G~ll~l~s~l~~a~~~v~~kk~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l 320 (404)
++.-.+++++--.+...++++.|..++..+ |+.+..+...++.+++...+.. ......+ .. .....+..+
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~-~~~~~~~--~~------~~~~~~~~l 117 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWAT-GFRKIPR--IK------SLKLFLKNF 117 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCC--CC------CHHHHHHHH
Confidence 445555556666666777889999999999 9999999999887766554322 1111100 00 011235567
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 015563 321 FWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 388 (404)
Q Consensus 321 ~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~ 388 (404)
+..|+++...+...+..++.+++....+...+.|+++++++.++++|+++..+++|.+++++|+.+..
T Consensus 118 lp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 118 LPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 77788777666666788899999999999999999999999999999999999999999999998754
No 49
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.23 E-value=3.4e-05 Score=73.98 Aligned_cols=129 Identities=18% Similarity=0.147 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHH
Q 015563 244 TGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWV 323 (404)
Q Consensus 244 ~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (404)
.+++++++++++|+...+..|...++++|.....+-...+.++++++. ..+...+ .. +..++..
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~---~~~~~~~---------~~----~~~~~~~ 67 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTV---GFPRLRQ---------FP----KRYLLAG 67 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHc---ccccccc---------cc----HHHHHHH
Confidence 467788999999999999999999999999999998888877776542 1111111 01 1112223
Q ss_pred HHHHHHHHHHHHHHh----hccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 015563 324 GMFYHLYNQLATNTL----ERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 388 (404)
Q Consensus 324 gl~~~~~~~~~~~~l----~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~ 388 (404)
++....++...+..+ +..++...++...+.|+++.++++++++|++++.+++|+++.++|+.+..
T Consensus 68 ~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~ 136 (295)
T PRK11689 68 GLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL 136 (295)
T ss_pred hHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee
Confidence 333333333333333 45677778899999999999999999999999999999999999998765
No 50
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.22 E-value=3.2e-05 Score=64.51 Aligned_cols=121 Identities=13% Similarity=0.040 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHH
Q 015563 244 TGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWV 323 (404)
Q Consensus 244 ~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (404)
.|+++.+.+.++.+..+++.|+-+++....+.... .. ..+. ...+. + ..++.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-~~-~~~~-----~~~~p--------------------~-~~i~l 53 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-FI-AALL-----AFGLA--------------------L-RAVLL 53 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-HH-HHHH-----HHhcc--------------------H-HHHHH
Confidence 47889999999999999999998876554432211 10 0000 00010 0 01223
Q ss_pred HHHHHHH-HHHHHHHhhccChhHHHHHhHhHHHHHHHHHHH--HhCCccchhhHHHHHHHHHHHHHHHHHHH
Q 015563 324 GMFYHLY-NQLATNTLERVAPLTHAVGNVLKRVFVIGFSIL--AFGNKISTQTGIGTVIAIAGVAAYSYIKA 392 (404)
Q Consensus 324 gl~~~~~-~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~--~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~ 392 (404)
|+..+.. ...+...+++.+.........+..+...+.++. +|||++|+.+++|++++++|+++.+..++
T Consensus 54 gl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 54 GLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 3333322 344567778888777666666666777777774 89999999999999999999999775433
No 51
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.19 E-value=0.0019 Score=62.68 Aligned_cols=222 Identities=12% Similarity=0.010 Sum_probs=132.5
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhHHHHH-HhhhHHHHHHHHHHHhCccc---C----hhhHHHHHHHHHhhhhhcc-
Q 015563 166 LLIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQL---P----LTLWLSLAPVVIGVSMASL- 236 (404)
Q Consensus 166 ~~~~~a~~~~~~~~l~~~al~~~svs~~~ii-~~~~Pvf~~l~s~l~l~e~~---s----~~~~l~l~l~~~Gv~l~~~- 236 (404)
.-+.-+++...++.+...+++++.++...-+ ..++.++..++..++++|-. + ....++++++++|+++.+.
T Consensus 75 ~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 75 PVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 4455677778899999999999999988755 67888899999999998643 2 3456889999999998876
Q ss_pred ---CCC---------cchHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCChhhHHHHHHH---HHHHHHHHHHHH
Q 015563 237 ---TEL---------SFNWTGFISAMISNISFTYRSIYSKKAM--------TDMDSTNIYAYISI---IALFVCIPPAII 293 (404)
Q Consensus 237 ---~~~---------~~~~~G~ll~l~s~l~~a~~~v~~kk~~--------~~~~~~~~~~~~~~---~~~~~l~~~~l~ 293 (404)
.|. .....|++.++++.+.++.++.....-. .+.+++....-+.+ .+.+..-.....
T Consensus 155 g~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~ 234 (345)
T PRK13499 155 GQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCF 234 (345)
T ss_pred hhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 1236899999999999999994333221 23444432222222 222222211111
Q ss_pred hcchhhhhcchhhhhhhhc-hHHHH---HHHHHHHHHHHHHHHHHHHHhhccChhH----HHHHhHhHHHHHHHHHHHHh
Q 015563 294 VEGPQLIKHGLSDAISKVG-MVKFI---SDLFWVGMFYHLYNQLATNTLERVAPLT----HAVGNVLKRVFVIGFSILAF 365 (404)
Q Consensus 294 ~e~~~~~~~~~~~~~~~~~-~~~~~---~~l~~~gl~~~~~~~~~~~~l~~~sa~t----~sv~~~l~~v~~~i~s~~~f 365 (404)
..... ...+....+... ....+ ..-.+.|+.-+..+.+....-++.+... ..+...+..+++.+.++ ++
T Consensus 235 ~~~~k--~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~l 311 (345)
T PRK13499 235 IRLAK--NKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VL 311 (345)
T ss_pred HHHhh--CCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hh
Confidence 10000 000000000111 00011 1223344444444555555555553332 22444666788889999 49
Q ss_pred CCccc------hhhHHHHHHHHHHHHHHHHH
Q 015563 366 GNKIS------TQTGIGTVIAIAGVAAYSYI 390 (404)
Q Consensus 366 ~e~~t------~~~~iG~~lvi~Gv~ly~~~ 390 (404)
||.-+ ...++|.++++.|..+..+.
T Consensus 312 kE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 312 KEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred hhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 99877 66799999999999876543
No 52
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.14 E-value=8e-05 Score=71.61 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhhcCC-CChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHH
Q 015563 254 ISFTYRSIYSKKAMTD-MDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQ 332 (404)
Q Consensus 254 l~~a~~~v~~kk~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 332 (404)
.+....++++|..+++ ..|..+..+....+.+.+.+... .......+ ... .-+..++..|++...+..
T Consensus 12 ~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------~~~-~~~~~~~~~g~~~~~~~~ 80 (302)
T TIGR00817 12 FLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLK---------ISS-ALLKLLLPVAIVHTIGHV 80 (302)
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCC---------CCH-HHHHHHHHHHHHHHHHHH
Confidence 3444455678888887 45667777776666555544311 11111111 011 124456667777767777
Q ss_pred HHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHH
Q 015563 333 LATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAY 387 (404)
Q Consensus 333 ~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly 387 (404)
..+..++++++...++...+.|+++.++++++++|+++..+++|.+++++|+.+.
T Consensus 81 ~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 81 TSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 7889999999999999999999999999999999999999999999999999764
No 53
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.13 E-value=0.0001 Score=70.53 Aligned_cols=130 Identities=16% Similarity=0.155 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHH
Q 015563 246 FISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGM 325 (404)
Q Consensus 246 ~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 325 (404)
++..++-.+.|+...+..|...++++|.....+-..++.+++++...... .... . ...+......|.
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~-~~~~--~----------~~~~~~~~~~g~ 76 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRG-HPLP--T----------LRQWLNAALIGL 76 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhC-CCCC--c----------HHHHHHHHHHHH
Confidence 34567788899999999998888999999999999999888777654322 1110 0 011223344454
Q ss_pred HHH-HHHHHHHHHh-hccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHH
Q 015563 326 FYH-LYNQLATNTL-ERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 389 (404)
Q Consensus 326 ~~~-~~~~~~~~~l-~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~ 389 (404)
+.. .++...+... +.+++...++...+.|+++.+++.+ ++|+++..+++|..+.++|+.+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 77 LLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 432 3344445556 7888888899999999999999985 7999999999999999999987653
No 54
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.13 E-value=0.00011 Score=70.45 Aligned_cols=112 Identities=21% Similarity=0.279 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCCC--Ccc-----chHHHHHHH-HHHHHHHHhhhccchhhHHH
Q 015563 123 IFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLP--KRA-----LLIPVAVCH-ALGHVTSNVSFAAVAVSFTH 194 (404)
Q Consensus 123 ~~~~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~~~~~~--~~~-----~~~~~a~~~-~~~~~l~~~al~~~svs~~~ 194 (404)
...++.|+..++.+ |...+ +..+++.+.+.+......+ ... ..+..+++. .++..+.++++++++++.+.
T Consensus 162 ~~~v~~r~~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as 239 (293)
T PRK10532 162 IYILSGQRAGAEHG-PATVA-IGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFG 239 (293)
T ss_pred HHHHHHHHHhccCC-chHHH-HHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHH
Confidence 34455577666555 65554 4555555544433322211 111 224455554 56778999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhcc
Q 015563 195 TIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 236 (404)
Q Consensus 195 ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~ 236 (404)
++..++|++..++++++++|+++..++++.+++++|++....
T Consensus 240 ~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 240 TLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL 281 (293)
T ss_pred HHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987743
No 55
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.10 E-value=0.00017 Score=67.19 Aligned_cols=140 Identities=15% Similarity=0.154 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHH
Q 015563 242 NWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLF 321 (404)
Q Consensus 242 ~~~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~ 321 (404)
+-.|+++++.+-+.|++--.|.|-+ ++.++.++..+-.+.+.++++........+..... . ...+..+..+.
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~----~---~~~p~~~~~~~ 76 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ----L---LKQPKTLLMLA 76 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----H---HhCcHHHHHHH
Confidence 4579999999999999999998865 88999999999999998888776665543322111 1 11122233333
Q ss_pred HHHHHHHHHHHHHH-HHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHH
Q 015563 322 WVGMFYHLYNQLAT-NTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 390 (404)
Q Consensus 322 ~~gl~~~~~~~~~~-~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~ 390 (404)
..++. ...|+..| ++...-..+..|+.-.+.|.+.+++|.++++|+++..|++..++..+|+..-.+.
T Consensus 77 l~a~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 77 LTALL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 33332 34466665 7778888999999999999999999999999999999999999999999865543
No 56
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.08 E-value=2.1e-05 Score=63.91 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhcc
Q 015563 172 VCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 236 (404)
Q Consensus 172 ~~~~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~ 236 (404)
+++.....+...+++++|++.+..+-++.++++++++++++|||++.++++++.++++|++++..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 44667888999999999999999999999999999999999999999999999999999998653
No 57
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.02 E-value=0.00017 Score=69.30 Aligned_cols=124 Identities=14% Similarity=0.169 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHH
Q 015563 246 FISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGM 325 (404)
Q Consensus 246 ~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 325 (404)
.++.++++++|+...+..|...++++|..+.++-..++.+.++++. ..++. . +..++..|+
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~---~~~~~------------~----~~~~~~~g~ 66 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFV---ARPKV------------P----LNLLLGYGL 66 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh---cCCCC------------c----hHHHHHHHH
Confidence 3567889999999999999988899999999998887765554432 11110 0 111222333
Q ss_pred HHHHHH-HHHHHHhhc-cChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 015563 326 FYHLYN-QLATNTLER-VAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 388 (404)
Q Consensus 326 ~~~~~~-~~~~~~l~~-~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~ 388 (404)
+....+ ...+..+++ .++...++...+.|+++.++++++++|+++..+++|.++.++|+.+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 67 TISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence 322222 233455565 466778888889999999999999999999999999999999988765
No 58
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.85 E-value=0.00056 Score=55.69 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=57.7
Q ss_pred HHHHHHHHH-HHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHH
Q 015563 320 LFWVGMFYH-LYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 391 (404)
Q Consensus 320 l~~~gl~~~-~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~ 391 (404)
.+..|+++. ..+...+..++..++ ..+....+.|+++.+++.++|+|+++..+++|.+++++|+.+..+.+
T Consensus 37 ~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 37 LILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 444455444 445555677788885 67788889999999999999999999999999999999999877654
No 59
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.79 E-value=0.0012 Score=56.53 Aligned_cols=116 Identities=14% Similarity=0.132 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHH-hCCCC---------------c-c---chHHHHHH
Q 015563 120 LNVIFNILNKRIYNY------FPYPYFVSVIHLLVGVVYCLVSWA-VGLPK---------------R-A---LLIPVAVC 173 (404)
Q Consensus 120 ~~~~~~~~nK~~l~~------f~~P~~lt~~r~~~~~l~~~~~~~-~~~~~---------------~-~---~~~~~a~~ 173 (404)
+...-+++.|+.+++ -..|+.+..+....+.+.+.+.+. .+.++ . . .++..+++
T Consensus 11 ~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (153)
T PF03151_consen 11 FSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLL 90 (153)
T ss_pred HHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHH
Confidence 333344566666665 235788887777777766654322 22111 1 1 34445666
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhc
Q 015563 174 HALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 235 (404)
Q Consensus 174 ~~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~ 235 (404)
....+...+..++++++-+++++....-+++.++++++++|+++..+++|+++.+.|+.+.+
T Consensus 91 ~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 91 AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 67778889999999999999999999999999999999999999999999999999998653
No 60
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.72 E-value=3.9e-06 Score=75.76 Aligned_cols=236 Identities=15% Similarity=0.156 Sum_probs=153.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCcc-chHH----HHHHHHHHHHHHHhhhccchhhHHHHH-HhhhHHHHHHHHHHH
Q 015563 138 PYFVSVIHLLVGVVYCLVSWAVGLPKRA-LLIP----VAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFI 211 (404)
Q Consensus 138 P~~lt~~r~~~~~l~~~~~~~~~~~~~~-~~~~----~a~~~~~~~~l~~~al~~~svs~~~ii-~~~~Pvf~~l~s~l~ 211 (404)
|..-+.--.+-+.++.++.+....|... ..+. -+++.+.++...+-+++++.++-+.-+ ..+..+-+.+++.+.
T Consensus 28 p~qQ~lGtT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~ 107 (288)
T COG4975 28 PYQQTLGTTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFV 107 (288)
T ss_pred hhHhhhhccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEE
Confidence 5544432222233334444444444443 3333 355567888899999999999887655 567788899999999
Q ss_pred hCcccChhhH----HHHHHHHHhhhhhccCCC--------cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q 015563 212 LGQQLPLTLW----LSLAPVVIGVSMASLTEL--------SFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYI 279 (404)
Q Consensus 212 l~e~~s~~~~----l~l~l~~~Gv~l~~~~~~--------~~~~~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~ 279 (404)
++|..+..+. ++++++++|+.+.++.|. ++.-.|+...+.|.+.|-.|-+..+.. ++|.++...-+
T Consensus 108 f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f--~v~g~saiLPq 185 (288)
T COG4975 108 FHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLF--DVDGLSAILPQ 185 (288)
T ss_pred EeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeeeeeccceeeeEeeeccc--cccchhhhhHH
Confidence 9998877665 688889999999887663 122478999999999999998887765 36666665555
Q ss_pred HHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHH
Q 015563 280 SIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIG 359 (404)
Q Consensus 280 ~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i 359 (404)
++-..+..+.....-+.....++ ...-+..|+.-...|.+.+..-++.+-.|-=...-+-.+++.+
T Consensus 186 AiGMv~~ali~~~~~~~~~~~K~--------------t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTi 251 (288)
T COG4975 186 AIGMVIGALILGFFKMEKRFNKY--------------TWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTI 251 (288)
T ss_pred HHHHHHHHHHHhhcccccchHHH--------------HHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeec
Confidence 44322222222222221222211 1223445665566677777766777665543345566788889
Q ss_pred HHHHHhCCccchhh----HHHHHHHHHHHHHHHH
Q 015563 360 FSILAFGNKISTQT----GIGTVIAIAGVAAYSY 389 (404)
Q Consensus 360 ~s~~~f~e~~t~~~----~iG~~lvi~Gv~ly~~ 389 (404)
-++++++|+-|..+ ++|.++++.|..+...
T Consensus 252 GGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 252 GGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred ceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 99999999988665 5788888887766543
No 61
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.66 E-value=0.0019 Score=53.93 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHH--HhCcccChhhHHHHHHHHHhhhhhccCC
Q 015563 167 LIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF--ILGQQLPLTLWLSLAPVVIGVSMASLTE 238 (404)
Q Consensus 167 ~~~~a~~~~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l--~l~e~~s~~~~l~l~l~~~Gv~l~~~~~ 238 (404)
++..-+++.++..+.+.++++.+++.+.-+.+..++++.+.++. ++||++++.++++++++++|+.++..++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 33344457888999999999999999999999999889888885 8999999999999999999999987543
No 62
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=7.7e-05 Score=70.19 Aligned_cols=223 Identities=18% Similarity=0.138 Sum_probs=126.7
Q ss_pred hHHHHH-HHHHHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCCcc----
Q 015563 167 LIPVAV-CHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSF---- 241 (404)
Q Consensus 167 ~~~~a~-~~~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~~~---- 241 (404)
++-.|+ .+.++-..++.|+.+.|.+..+-+.++..++.++++.++++||+++...+++.++++|-.++.....+.
T Consensus 66 ~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~ 145 (335)
T KOG2922|consen 66 LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIE 145 (335)
T ss_pred HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccc
Confidence 333444 467899999999999999999999999999999999999999999999999999999998765432211
Q ss_pred h---------HHHHHHHHHHHHHH-HHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhh
Q 015563 242 N---------WTGFISAMISNISF-TYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKV 311 (404)
Q Consensus 242 ~---------~~G~ll~l~s~l~~-a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~ 311 (404)
+ -.+++.-.+-.+.- .+-..+.| ++....+++.|..+.+++-.+-..-.-.........++.. .+.
T Consensus 146 t~~el~~~~~~~~Fliy~~~iil~~~il~~~~~---p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~-~ql 221 (335)
T KOG2922|consen 146 SVEEVWELATEPGFLVYVIIIILIVLILIFFYA---PRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN-NQL 221 (335)
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHHHHheeec---ccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC-ccc
Confidence 0 02322211111111 11111111 1223345566666655443221110000000000000000 112
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhccChhH-HHHHhHhHHHHHHHHHHHHhCCc--cc----hhhHHHHHHHHHHH
Q 015563 312 GMVKFISDLFWVGMFYHLYNQLATNTLERVAPLT-HAVGNVLKRVFVIGFSILAFGNK--IS----TQTGIGTVIAIAGV 384 (404)
Q Consensus 312 ~~~~~~~~l~~~gl~~~~~~~~~~~~l~~~sa~t-~sv~~~l~~v~~~i~s~~~f~e~--~t----~~~~iG~~lvi~Gv 384 (404)
..+..|..++....+.........++++..++.. ..+.-.+-.-++++.|.++|.|- .+ ...+.|...++.|+
T Consensus 222 ~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~ 301 (335)
T KOG2922|consen 222 FYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGI 301 (335)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhhee
Confidence 2223344444444433332223346666665444 34455556678888999999873 33 34677888899999
Q ss_pred HHHHHHHHh
Q 015563 385 AAYSYIKAQ 393 (404)
Q Consensus 385 ~ly~~~~~~ 393 (404)
++....|..
T Consensus 302 flL~~~kd~ 310 (335)
T KOG2922|consen 302 FLLHRTKDM 310 (335)
T ss_pred eEeeeeccc
Confidence 887644433
No 63
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.53 E-value=0.0018 Score=61.96 Aligned_cols=132 Identities=13% Similarity=0.093 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHH
Q 015563 245 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVG 324 (404)
Q Consensus 245 G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 324 (404)
|++++++++++|+...+..|+.. +.++.+... ..++..++.........+.. +....+..-+..|
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~~--~~~g~l~~~~~~~~~~~~~~------------~~~~~~~~g~l~G 66 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGPYSQTLG--TTFGALILSIAIAIFVLPEF------------WALSIFLVGLLSG 66 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCHHHHHHH--HHHHHHHHHHHHHHHhCCcc------------cccHHHHHHHHHH
Confidence 57889999999999999999875 555555542 33344433333222221111 0112344455566
Q ss_pred HHHHHHHHHHHHHhhccChhHHHH-HhHhHHHHHHHHHHHHhCCccchhh----HHHHHHHHHHHHHHHHHH
Q 015563 325 MFYHLYNQLATNTLERVAPLTHAV-GNVLKRVFVIGFSILAFGNKISTQT----GIGTVIAIAGVAAYSYIK 391 (404)
Q Consensus 325 l~~~~~~~~~~~~l~~~sa~t~sv-~~~l~~v~~~i~s~~~f~e~~t~~~----~iG~~lvi~Gv~ly~~~~ 391 (404)
++-...|...+.++++.+....-. ...+..+++.+++.++|||+.+..+ ++|.++++.|+++....+
T Consensus 67 ~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 67 AFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 666666788888888887766533 3448888999999999999999999 999999999999876544
No 64
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.47 E-value=0.0013 Score=54.08 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=62.9
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhHHHHH-HhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccC
Q 015563 166 LLIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT 237 (404)
Q Consensus 166 ~~~~~a~~~~~~~~l~~~al~~~svs~~~ii-~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~ 237 (404)
+.+...+++..+..+...+++++|++.+..+ ....-+.+.++++++++|++++.+++++.++++|++.....
T Consensus 32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 4455566677888999999999999998877 57899999999999999999999999999999999987553
No 65
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.45 E-value=0.0041 Score=50.30 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=61.1
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhHHHHH-HhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccC
Q 015563 166 LLIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT 237 (404)
Q Consensus 166 ~~~~~a~~~~~~~~l~~~al~~~svs~~~ii-~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~ 237 (404)
..+..-+++.+...+...+++++|++.+..+ ....-+.+.+++++++||++++.+++++.++++|+++....
T Consensus 32 ~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 32 PSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3344455567778888899999999999888 45788899999999999999999999999999999987653
No 66
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.005 Score=48.99 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=62.3
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhHHHHH-HhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccC
Q 015563 166 LLIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT 237 (404)
Q Consensus 166 ~~~~~a~~~~~~~~l~~~al~~~svs~~~ii-~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~ 237 (404)
+.+...+++..+..+.-.+++++|++.+..+ ...-.+.+.+.+++++||+.+..+++++.++++|++.....
T Consensus 32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 5566666778888889999999999887655 67788899999999999999999999999999999976543
No 67
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.42 E-value=0.0019 Score=52.50 Aligned_cols=57 Identities=18% Similarity=0.093 Sum_probs=48.1
Q ss_pred HHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 015563 332 QLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 388 (404)
Q Consensus 332 ~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~ 388 (404)
+.....+++.+.......-.+..+.+.++|+++|||++++.+++|.+++++|+.+..
T Consensus 52 ~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 52 VLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 344566788877776555569999999999999999999999999999999998754
No 68
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.39 E-value=0.0093 Score=56.15 Aligned_cols=140 Identities=17% Similarity=0.121 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHH
Q 015563 242 NWTGFISAMISNISFTYRSIYSKKAMTD-MDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDL 320 (404)
Q Consensus 242 ~~~G~ll~l~s~l~~a~~~v~~kk~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l 320 (404)
...+....++.++.|+......|+..++ .+......+......+...+.. ..+....... . ...+..+
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~--~~~~~~~ 73 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLL-LLEPRGLRPA--------L--RPWLLLL 73 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHH-Hhhccccccc--------c--cchHHHH
Confidence 3467778888889999999999888766 3444444445554544422211 1111001100 0 0012334
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHH-HHhCCccchhhHHHHHHHHHHHHHHHHHHH
Q 015563 321 FWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSI-LAFGNKISTQTGIGTVIAIAGVAAYSYIKA 392 (404)
Q Consensus 321 ~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~-~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~ 392 (404)
+..++.....+...+..++++++....+.....|+++.+++. ++++|++++.++.|..+.+.|+.+......
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~ 146 (292)
T COG0697 74 LLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGG 146 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCC
Confidence 444555555666777889999999999999999999999997 667999999999999999999998775443
No 69
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.37 E-value=0.0067 Score=58.36 Aligned_cols=128 Identities=16% Similarity=0.294 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHh---CCCC--------cc----chHHHHHH
Q 015563 110 TGFFFFMWYFLNVIFNILNKRIYNYFP-YPYFVSVIHLLVGVVYCLVSWAV---GLPK--------RA----LLIPVAVC 173 (404)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~nK~~l~~f~-~P~~lt~~r~~~~~l~~~~~~~~---~~~~--------~~----~~~~~a~~ 173 (404)
..+++++..++......++|+++++.+ .|+...++..+++.++..+.... +... .+ .++..+++
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 334445555566666678888887643 47788888888777665443222 1111 01 55666777
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccC
Q 015563 174 HALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT 237 (404)
Q Consensus 174 ~~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~ 237 (404)
...++.+.+...+..+.-..+++..+.-+++.+++.++++++++..+|.|+++++.|..+-...
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~ 298 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA 298 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence 7777777788889999999999999999999999999999999999999999999999876543
No 70
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.27 E-value=0.0049 Score=49.69 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhHHHHH-HhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhc
Q 015563 166 LLIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 235 (404)
Q Consensus 166 ~~~~~a~~~~~~~~l~~~al~~~svs~~~ii-~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~ 235 (404)
..+...+++.....+...+++++|++.+..+ ...--+.+.+.+++++||++++.+++++.+++.|++...
T Consensus 37 ~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 37 YGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3444455567788888999999999988766 557788999999999999999999999999999998753
No 71
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.21 E-value=0.0038 Score=50.05 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhHHHHH-HhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhcc
Q 015563 166 LLIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 236 (404)
Q Consensus 166 ~~~~~a~~~~~~~~l~~~al~~~svs~~~ii-~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~ 236 (404)
+.+...+++..+..+...+++++|++.+..+ ...-.+.+.+.+++++||++++.+++++.+++.|++....
T Consensus 31 ~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 31 PSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 4445556677888889999999999988766 5588899999999999999999999999999999998643
No 72
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.15 E-value=0.013 Score=56.99 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHH
Q 015563 321 FWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 390 (404)
Q Consensus 321 ~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~ 390 (404)
+..+++-...|+....+.++++.....+......++++++|+++++++.++.+++|++++++|+.+....
T Consensus 83 ~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 83 FLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence 3447777888999999999999999999999999999999999999999999999999999999876544
No 73
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.93 E-value=0.027 Score=54.87 Aligned_cols=140 Identities=16% Similarity=0.108 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH--HHHHHHHH-HhcchhhhhcchhhhhhhhchHHHHHH
Q 015563 243 WTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIAL--FVCIPPAI-IVEGPQLIKHGLSDAISKVGMVKFISD 319 (404)
Q Consensus 243 ~~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~--~~l~~~~l-~~e~~~~~~~~~~~~~~~~~~~~~~~~ 319 (404)
..|+++++++.+|++.+.+-+||. ++ -+++.+ |. ..+. -++.|+.. ....+.+. +.+.+.+ ...+..
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~~-k~-w~wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~-----~~~~~~~-~~~~~~ 75 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKKV-KK-WSWETM-WS-VGGIFSWLILPWLIAALLLPDFW-----AYYSSFS-GSTLLP 75 (345)
T ss_pred HHHHHHHHHHHHHhhccccccccc-CC-CchhHH-HH-HHHHHHHHHHHHHHHHHHhhhHH-----HHHHhcC-HHHHHH
Confidence 579999999999999999999983 43 334444 32 2222 12222111 11112221 1112222 233455
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC-hhHHHHHhHhHHHHHHHHHHHHhCCcc---c----hhhHHHHHHHHHHHHHHHHHH
Q 015563 320 LFWVGMFYHLYNQLATNTLERVA-PLTHAVGNVLKRVFVIGFSILAFGNKI---S----TQTGIGTVIAIAGVAAYSYIK 391 (404)
Q Consensus 320 l~~~gl~~~~~~~~~~~~l~~~s-a~t~sv~~~l~~v~~~i~s~~~f~e~~---t----~~~~iG~~lvi~Gv~ly~~~~ 391 (404)
.+..|++-...|...+..+++.+ +.+..+..-+.-+...+++.+++||-. + ..-++|.++++.|+.+.++..
T Consensus 76 ~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 76 VFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 66677776677777777777775 445677778889999999999999633 2 346889999999999988744
Q ss_pred H
Q 015563 392 A 392 (404)
Q Consensus 392 ~ 392 (404)
.
T Consensus 156 ~ 156 (345)
T PRK13499 156 Q 156 (345)
T ss_pred h
Confidence 3
No 74
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.89 E-value=0.026 Score=51.69 Aligned_cols=118 Identities=22% Similarity=0.231 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHh-CCCC--ccchHHH----HHHH-HHHHHHHHhhhcc
Q 015563 116 MWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAV-GLPK--RALLIPV----AVCH-ALGHVTSNVSFAA 187 (404)
Q Consensus 116 ~~~~~~~~~~~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~~~-~~~~--~~~~~~~----a~~~-~~~~~l~~~al~~ 187 (404)
.--.++..+.+..|.+-..-| .-.-+..-+.+++++.+++-.. ..+. .+.+++. +++. .+-..+...+++.
T Consensus 155 ~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLEmiAL~r 233 (292)
T COG5006 155 GAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLEMIALRR 233 (292)
T ss_pred HHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHHHHHHhh
Confidence 333444555555566554333 2233445677777666554332 1111 1134443 3333 2445688999999
Q ss_pred chhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhh
Q 015563 188 VAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 234 (404)
Q Consensus 188 ~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~ 234 (404)
.+...+.++.+++|.+.++.++++++|+++..||+++..++.+.+=.
T Consensus 234 lp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 234 LPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred CChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999998887733
No 75
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.89 E-value=0.033 Score=47.06 Aligned_cols=130 Identities=13% Similarity=0.156 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHH
Q 015563 246 FISAMISNISFTYRSIYSKKAMTDMD-STNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVG 324 (404)
Q Consensus 246 ~ll~l~s~l~~a~~~v~~kk~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 324 (404)
.++++++..+-+++..+.-++.+..+ |+.-.......+++.+....+..+.+.... . ...+ .| ....|
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~--~----~~~p---~w--~~lGG 71 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLAS--L----SSVP---WW--AYLGG 71 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccch--h----ccCC---hH--HhccH
Confidence 46778888888888888888877766 888888888888888887777766542111 1 1111 12 23367
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHhHh-HHHHHHHHHHH-Hh---CCccchhhHHHHHHHHHHHHH
Q 015563 325 MFYHLYNQLATNTLERVAPLTHAVGNVL-KRVFVIGFSIL-AF---GNKISTQTGIGTVIAIAGVAA 386 (404)
Q Consensus 325 l~~~~~~~~~~~~l~~~sa~t~sv~~~l-~~v~~~i~s~~-~f---~e~~t~~~~iG~~lvi~Gv~l 386 (404)
+++..+-........+.++......... +-+.+++++.+ +| ++++++.+++|.+++++|+.+
T Consensus 72 ~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 72 LLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 7777777777778899998876654444 45556666665 33 367999999999999999863
No 76
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.88 E-value=0.0049 Score=50.58 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=45.5
Q ss_pred HHhhccChh-HHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHH
Q 015563 336 NTLERVAPL-THAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 391 (404)
Q Consensus 336 ~~l~~~sa~-t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~ 391 (404)
..+++.+-. .+++..-+-.+.+.+.++++|||++|+.+++|+.++++|+...+...
T Consensus 49 ~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 49 FAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 444665433 35666677888999999999999999999999999999999876544
No 77
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.81 E-value=0.0032 Score=58.62 Aligned_cols=76 Identities=24% Similarity=0.293 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 015563 318 SDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 393 (404)
Q Consensus 318 ~~l~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~ 393 (404)
......++++.+.|...|..++..+|.++.+....|.+++.++++++++++++..||++..+...|+.+.......
T Consensus 18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 3456778888889999999999999999999999999999999999999999999999999999999987765544
No 78
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.79 E-value=0.056 Score=43.60 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=42.6
Q ss_pred HHhhccChh-HHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHH
Q 015563 336 NTLERVAPL-THAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAY 387 (404)
Q Consensus 336 ~~l~~~sa~-t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly 387 (404)
.++++.+-. .+++..-+-.+.+.+.++++|||++++.+++|+.+++.|+..-
T Consensus 54 ~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 54 QAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 344555443 3677777788888999999999999999999999999999874
No 79
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.70 E-value=0.015 Score=46.97 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=46.9
Q ss_pred HHHhhccChh-HHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHH
Q 015563 335 TNTLERVAPL-THAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 391 (404)
Q Consensus 335 ~~~l~~~sa~-t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~ 391 (404)
..++++.+-. .+++..-+..+.+.+.++++|+|++++.+++|+.+++.|+...+..+
T Consensus 48 ~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3455666544 36777778889999999999999999999999999999999876543
No 80
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.44 E-value=0.029 Score=44.97 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=45.5
Q ss_pred HHhhccChh-HHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 015563 336 NTLERVAPL-THAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 388 (404)
Q Consensus 336 ~~l~~~sa~-t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~ 388 (404)
.++++.+-. .+++..-+-.+.+.+.++++|||++++.+++|+.+++.|+..-+
T Consensus 48 ~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 48 WAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 445666544 47888889999999999999999999999999999999998764
No 81
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.41 E-value=0.026 Score=44.23 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHH-HhhhHHHHHHHHHHHhCcccChhhHHHHHHH
Q 015563 169 PVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPV 227 (404)
Q Consensus 169 ~~a~~~~~~~~l~~~al~~~svs~~~ii-~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~ 227 (404)
..-.++..+..+...+++++|++.+..+ .....+.+.+.+.+++||+++..+++++.++
T Consensus 34 ~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 34 LAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3344677888899999999999998665 5699999999999999999999999998764
No 82
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.033 Score=44.39 Aligned_cols=55 Identities=20% Similarity=0.171 Sum_probs=46.3
Q ss_pred HHhhccChh-HHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHH
Q 015563 336 NTLERVAPL-THAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 390 (404)
Q Consensus 336 ~~l~~~sa~-t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~ 390 (404)
.++++.+-. .+++.+-.-.+.+.+.++++|+|++++.+++|..++++|+..-+..
T Consensus 49 ~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 344666543 4788888899999999999999999999999999999999876643
No 83
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.35 E-value=0.0042 Score=57.75 Aligned_cols=132 Identities=15% Similarity=0.149 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHH
Q 015563 245 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVG 324 (404)
Q Consensus 245 G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 324 (404)
|++.+++|.++++...+=.||. +..|++-.+++++....+..+...++.+.+.+.+ ...+.|
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~gDg~~fQw~~~~~i~~~g~~v~~~~~~p~f~p-----------------~amlgG 62 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DTGDGFFFQWVMCSGIFLVGLVVNLILGFPPFYP-----------------WAMLGG 62 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cCCCcHHHHHHHHHHHHHHHHHHHHhcCCCccee-----------------HHHhhh
Confidence 6788899999999988888876 5668887777777666555555555555444322 122333
Q ss_pred HHHHHHHHHHHHHhhccCh-hHHHHHhHhHHHHHHHHHHH-HhCCc-----cchhhHHHHHHHHHHHHHHHHHHHhh
Q 015563 325 MFYHLYNQLATNTLERVAP-LTHAVGNVLKRVFVIGFSIL-AFGNK-----ISTQTGIGTVIAIAGVAAYSYIKAQM 394 (404)
Q Consensus 325 l~~~~~~~~~~~~l~~~sa-~t~sv~~~l~~v~~~i~s~~-~f~e~-----~t~~~~iG~~lvi~Gv~ly~~~~~~~ 394 (404)
.+-...|.+..-+++..+- +-..+.+...-+.....|-+ +||++ -.+.+++|++++++|..+|...|...
T Consensus 63 ~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 63 ALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 3333344444444444432 22344455555566666654 56543 34789999999999999999877654
No 84
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.32 E-value=0.052 Score=49.61 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=60.5
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhh
Q 015563 166 LLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSM 233 (404)
Q Consensus 166 ~~~~~a~~~~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l 233 (404)
..+...++...+..+..+.++|.+..+..++..+.++++.+++.++++|+++..+++++.+++.|+.+
T Consensus 154 ~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 154 AVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 45555566777778899999999999999999999999999999999999999999999999988754
No 85
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.14 E-value=0.12 Score=48.45 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=57.7
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhH----HHHHHHHHhhh
Q 015563 166 LLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLW----LSLAPVVIGVS 232 (404)
Q Consensus 166 ~~~~~a~~~~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~----l~l~l~~~Gv~ 232 (404)
+-+..++++..+..++..|.+...++....+.++..+...+.+.+++||+-+++++ ++++++++|.+
T Consensus 197 ~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 197 KNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 66778999999999999999999999999999999999999999999998887765 45555555554
No 86
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.97 E-value=0.45 Score=45.92 Aligned_cols=136 Identities=22% Similarity=0.216 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHhhcC----CCChhhHHHHHHHHHHHHHHHHHHHhcch---hhhhcchhhhhhhhchHHHHHHHHH
Q 015563 250 MISNISFTYRSIYSKKAMT----DMDSTNIYAYISIIALFVCIPPAIIVEGP---QLIKHGLSDAISKVGMVKFISDLFW 322 (404)
Q Consensus 250 l~s~l~~a~~~v~~kk~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~e~~---~~~~~~~~~~~~~~~~~~~~~~l~~ 322 (404)
++..+-++......|...+ +..+.+.....=+.-++++....+..+.. +... +....+ +..+.-...+..
T Consensus 21 ~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~-~l~~~i--~~~~~~~lk~~v 97 (345)
T KOG2234|consen 21 IVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLK-SLSKEI--LAAPRETLKVSV 97 (345)
T ss_pred HHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhh-hcCHHH--HhChHHHHHHHH
Confidence 3333344444444444332 25566666666666677776655543322 1110 111100 000101224455
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 015563 323 VGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 388 (404)
Q Consensus 323 ~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~ 388 (404)
.++++.+-|-..|..+...+|.|+.+...+|...+.+++++++++++++.||...++.+.|+.+.+
T Consensus 98 Pa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 98 PALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 567777778788999999999999999999999999999999999999999999999999999887
No 87
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.78 E-value=0.00088 Score=61.50 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHH
Q 015563 243 WTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFW 322 (404)
Q Consensus 243 ~~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~ 322 (404)
..|.++..++ .++....+..++.. +.||.+.-..-.+.-.+...|..+..-.+.+.+.+.+ ..+++
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~-e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R------------~~LiL 102 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVL-ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR------------KWLIL 102 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhh-ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE------------EEEEe
Confidence 3677787777 77777777777764 3445444333322111112221111111111111110 01233
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHH
Q 015563 323 VGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 389 (404)
Q Consensus 323 ~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~ 389 (404)
=|+.++..-...|+++++.+-....+.+...|++++++++.+++|+.|....+|..+.+.|+++..+
T Consensus 103 Rg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvR 169 (346)
T KOG4510|consen 103 RGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVR 169 (346)
T ss_pred ehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEec
Confidence 3444544444556666777766777788889999999999999999999999999999999987653
No 88
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.78 E-value=0.54 Score=39.67 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=78.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHh-CCCC------cc-chHHHHHHHHHHHHHHHhhhccchhhHHHHH-
Q 015563 126 ILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAV-GLPK------RA-LLIPVAVCHALGHVTSNVSFAAVAVSFTHTI- 196 (404)
Q Consensus 126 ~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~~~-~~~~------~~-~~~~~a~~~~~~~~l~~~al~~~svs~~~ii- 196 (404)
.+|-++-+....|+.-++..+.++.+.+.++... +.++ .+ +.+.-+++......+..+....+.++....+
T Consensus 18 ~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~ 97 (138)
T PF04657_consen 18 AFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNIILVPRLGAALTTILI 97 (138)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3445554444459999999999998876654433 2211 12 5666778888888999999999999887766
Q ss_pred HhhhHHHHHHHHHH----HhCcccChhhHHHHHHHHHhhhh
Q 015563 197 KALEPFFNAAASQF----ILGQQLPLTLWLSLAPVVIGVSM 233 (404)
Q Consensus 197 ~~~~Pvf~~l~s~l----~l~e~~s~~~~l~l~l~~~Gv~l 233 (404)
...+-+..+++..+ .-+++++++++++++++++|+.+
T Consensus 98 ~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 98 VAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 45556666667665 35679999999999999999864
No 89
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=95.75 E-value=0.059 Score=51.75 Aligned_cols=118 Identities=17% Similarity=0.115 Sum_probs=76.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHH
Q 015563 241 FNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDL 320 (404)
Q Consensus 241 ~~~~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l 320 (404)
....|++++++++++.+...+++||...+.+....-.-... ... +. .+.+|..+
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~---------------~~~----l~-------~~~W~~G~ 57 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGG---------------RSY----LR-------RPLWWIGL 57 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchh---------------hHH----Hh-------hHHHHHHH
Confidence 34689999999999999999999997643222000000000 000 00 01112222
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 015563 321 FWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 388 (404)
Q Consensus 321 ~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~ 388 (404)
+..+ .+-..+ +.++...++...+..+.+.-++..+++.++++|+++...++|+++++.|..+..
T Consensus 58 ~~~~-~g~~~~---~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 58 LLMV-LGEILN---FVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHHh-cchHHH---HHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 2222 222333 334466666667777888899999999999999999999999999999998644
No 90
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.37 E-value=0.23 Score=38.83 Aligned_cols=46 Identities=22% Similarity=0.176 Sum_probs=24.9
Q ss_pred HHHhhccChhH-HHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHH
Q 015563 335 TNTLERVAPLT-HAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIA 380 (404)
Q Consensus 335 ~~~l~~~sa~t-~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lv 380 (404)
..++++.+... +++..-+..+.+.+.|+++|||++|+.+++|+.++
T Consensus 47 ~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 47 SLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 34556654443 46666778889999999999999999999999875
No 91
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.28 E-value=0.58 Score=39.83 Aligned_cols=137 Identities=7% Similarity=0.075 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHH
Q 015563 243 WTGFISAMISNISFTYRSIYSKKAMTDMD-STNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLF 321 (404)
Q Consensus 243 ~~G~ll~l~s~l~~a~~~v~~kk~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~ 321 (404)
+..++.++.+.++-..++-..-++.+..+ |..-.......+.+.+....+..+...... ......+ | .+
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a-----~~~~~pw---W--~~ 73 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLA-----AVASAPW---W--AW 73 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchh-----hccCCch---H--HH
Confidence 45667788888888888888777776666 555555566667777766666554332221 1111122 2 23
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHH-HhHhHHHHHHHHHHHHhC----CccchhhHHHHHHHHHHHHHHHH
Q 015563 322 WVGMFYHLYNQLATNTLERVAPLTHAV-GNVLKRVFVIGFSILAFG----NKISTQTGIGTVIAIAGVAAYSY 389 (404)
Q Consensus 322 ~~gl~~~~~~~~~~~~l~~~sa~t~sv-~~~l~~v~~~i~s~~~f~----e~~t~~~~iG~~lvi~Gv~ly~~ 389 (404)
.-|+++..+-........+.++.+.-. .-.-+-+.+++++.+=+. .++++..++|++++++|+++...
T Consensus 74 ~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 74 IGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred HccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 344656555555556668887776544 444455556666655433 57999999999999999666543
No 92
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.92 E-value=0.48 Score=44.78 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHh-C-----------CCCcc-chHHHHHHHH
Q 015563 110 TGFFFFMWYFLNVIFNILNKRIYNYFP-YPYFVSVIHLLVGVVYCLVSWAV-G-----------LPKRA-LLIPVAVCHA 175 (404)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~nK~~l~~f~-~P~~lt~~r~~~~~l~~~~~~~~-~-----------~~~~~-~~~~~a~~~~ 175 (404)
...++..+.++-...+-.++.++.++. -++.+.+.-.++.+++...+... + .|+-. +++..+.+.+
T Consensus 173 G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~ga 252 (327)
T KOG1581|consen 173 GILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGA 252 (327)
T ss_pred hHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhh
Confidence 444555555555555667777777543 24444444444444444333221 1 11111 8899999999
Q ss_pred HHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhh
Q 015563 176 LGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSM 233 (404)
Q Consensus 176 ~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l 233 (404)
.++.+-++-++.-..=..++|..+-=++.++++.++++.+.+..||+++.+++.|..+
T Consensus 253 vGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 253 VGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred hhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 9998888888766666777777888899999999999999999999999999988875
No 93
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=94.81 E-value=0.065 Score=43.38 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhHHHHH-HhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhh
Q 015563 167 LIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSM 233 (404)
Q Consensus 167 ~~~~a~~~~~~~~l~~~al~~~svs~~~ii-~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l 233 (404)
+...=+++-.+.+.+++.+...+.+.+.-+ .++.=+|+++.++++.+|..++..++++.+++.|+.+
T Consensus 44 y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 44 YIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 333344566677888999999999999888 5899999999998888888899999999999999875
No 94
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=94.41 E-value=1.7 Score=42.03 Aligned_cols=144 Identities=14% Similarity=0.103 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHH
Q 015563 243 WTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFW 322 (404)
Q Consensus 243 ~~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~ 322 (404)
..|+++..++.++.+.+.+=.||. |+-+-.+.-..+.+++.++.-.......-|++.. .+.+.+....+. ...
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv-k~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~-----i~~~~~~~~l~~-~~l 78 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV-KGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFS-----IYSATPASTLFW-TFL 78 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc-CCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH-----HHHhCChhHHHH-HHH
Confidence 579999999999999998888876 4443333333344444443322222334444332 112122122111 122
Q ss_pred HHH----HHHHHHHHHHHHhhccC-hhHHHHHhHhHHHHHHHHHHHHhC-------CccchhhHHHHHHHHHHHHHHHHH
Q 015563 323 VGM----FYHLYNQLATNTLERVA-PLTHAVGNVLKRVFVIGFSILAFG-------NKISTQTGIGTVIAIAGVAAYSYI 390 (404)
Q Consensus 323 ~gl----~~~~~~~~~~~~l~~~s-a~t~sv~~~l~~v~~~i~s~~~f~-------e~~t~~~~iG~~lvi~Gv~ly~~~ 390 (404)
.|+ .+..+. ..+++.+ ++..++.--+-.++..++--++.| ++-....++|.+++++|+.+..+.
T Consensus 79 ~G~lWGIGgltfG----l~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 79 FGVLWGIGGLTFG----LAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HHHHHhcchhhHh----HHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 222 122222 2223332 222333333333344444333322 333456899999999999998877
Q ss_pred HHhhHHH
Q 015563 391 KAQMEEE 397 (404)
Q Consensus 391 ~~~~~~~ 397 (404)
..+++++
T Consensus 155 G~~Ke~~ 161 (344)
T PF06379_consen 155 GSMKEKE 161 (344)
T ss_pred HHhhhhh
Confidence 6554433
No 95
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=92.41 E-value=0.39 Score=46.28 Aligned_cols=130 Identities=14% Similarity=0.081 Sum_probs=96.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHH-HHHHhC-CCCc------c------ch
Q 015563 106 PALVTGFFFFMWYFLNVIFNILNKRIYNY----FPYPYFVSVIHLLVGVVYCL-VSWAVG-LPKR------A------LL 167 (404)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~nK~~l~~----f~~P~~lt~~r~~~~~l~~~-~~~~~~-~~~~------~------~~ 167 (404)
-.+......+.+.+....=+++.|.++++ .+ ++.+..++--++.+.++ +.+... ..+. + .+
T Consensus 160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (316)
T KOG1441|consen 160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLIL 238 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHH
Confidence 35556666666666666667888888852 55 77777666666666555 443221 1111 1 44
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhcc
Q 015563 168 IPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 236 (404)
Q Consensus 168 ~~~a~~~~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~ 236 (404)
+..+++....+...+..+.++++=++++.....=+++...++++++++.+..+.+|..+.+.|+.+...
T Consensus 239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 455566667778889999999999999999999999999999999999999999999999999998654
No 96
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.18 E-value=0.3 Score=44.42 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 015563 325 MFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 393 (404)
Q Consensus 325 l~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~ 393 (404)
+.+.+.......+++.++=-|-.+....||+-++++++++.+++-+|....-..++++|+.++.+.+++
T Consensus 93 ~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K 161 (337)
T KOG1580|consen 93 ASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK 161 (337)
T ss_pred HHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence 333344555667788888778888999999999999999999999999999999999999999877544
No 97
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=91.68 E-value=1.7 Score=35.27 Aligned_cols=51 Identities=29% Similarity=0.260 Sum_probs=40.1
Q ss_pred HHhhccC-hhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHH
Q 015563 336 NTLERVA-PLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAA 386 (404)
Q Consensus 336 ~~l~~~s-a~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~l 386 (404)
..+++.+ ++..-+.|.+.-+++.+.++++.+|..+...++|+++++.|+.+
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 3445543 33455678888999999999888888899999999999999864
No 98
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.38 E-value=13 Score=31.79 Aligned_cols=110 Identities=21% Similarity=0.230 Sum_probs=70.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhC--CCC------cc-chHHHHHHHHHHHHHHHhhhccchhhHHHH-
Q 015563 126 ILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVG--LPK------RA-LLIPVAVCHALGHVTSNVSFAAVAVSFTHT- 195 (404)
Q Consensus 126 ~~nK~~l~~f~~P~~lt~~r~~~~~l~~~~~~~~~--~~~------~~-~~~~~a~~~~~~~~l~~~al~~~svs~~~i- 195 (404)
-.|-++-.....|..-++..+.++.+.+.+..... .+. .+ +.+.-+++.......+......+.+..++.
T Consensus 22 ~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l 101 (150)
T COG3238 22 AINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIAL 101 (150)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhhhhhHHhccchhHHHHHHH
Confidence 35555555566799999999999887665443332 111 11 455556555555555555666666655544
Q ss_pred HHhhhHHHHHHHHHHHh----CcccChhhHHHHHHHHHhhhhhc
Q 015563 196 IKALEPFFNAAASQFIL----GQQLPLTLWLSLAPVVIGVSMAS 235 (404)
Q Consensus 196 i~~~~Pvf~~l~s~l~l----~e~~s~~~~l~l~l~~~Gv~l~~ 235 (404)
+-+.+-+..+++-.+=. +++++..++++++++++|+.++.
T Consensus 102 ~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 102 VIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred HHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 45566666666654422 36889999999999999965543
No 99
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=88.18 E-value=1.4 Score=42.94 Aligned_cols=76 Identities=11% Similarity=0.092 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHH
Q 015563 316 FISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 391 (404)
Q Consensus 316 ~~~~l~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~ 391 (404)
.....+..+.+-++.|+....+++.++.....++....-.++..++.++-+|++|+..+++..+.++|+++.+..+
T Consensus 158 ~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~ 233 (416)
T KOG2765|consen 158 TAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGD 233 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecc
Confidence 3445566677777778888888899999989999999999999999999999999999999999999988766543
No 100
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=87.97 E-value=0.26 Score=43.57 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=54.1
Q ss_pred HHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHH
Q 015563 331 NQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 392 (404)
Q Consensus 331 ~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~ 392 (404)
|+....++++.+|...+-.......++.++++++++|.+....++..++.+.|+...++...
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 55556778999999999999999999999999999999999999999999999987665443
No 101
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=86.13 E-value=0.2 Score=45.91 Aligned_cols=135 Identities=12% Similarity=0.132 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHH
Q 015563 245 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVG 324 (404)
Q Consensus 245 G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 324 (404)
+++.+++=++.|+.--....|.- -+|.+...=+.+-++++.+...++ ..|... . ..+..-+.+|
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~G--G~p~qQ~lGtT~GALifaiiv~~~-~~p~~T------------~-~~~iv~~isG 66 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFG--GKPYQQTLGTTLGALIFAIIVFLF-VSPELT------------L-TIFIVGFISG 66 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecC--CChhHhhhhccHHHHHHHHHHhee-ecCccc------------h-hhHHHHHHhh
Confidence 56778888888888776666552 234443333333333333333332 222221 1 1233445566
Q ss_pred HHHHHHHHHHHHHhhccChh-HHHHHhHhHHHHHHHHHHHHhCCccchhh----HHHHHHHHHHHHHHHHHHHhhH
Q 015563 325 MFYHLYNQLATNTLERVAPL-THAVGNVLKRVFVIGFSILAFGNKISTQT----GIGTVIAIAGVAAYSYIKAQME 395 (404)
Q Consensus 325 l~~~~~~~~~~~~l~~~sa~-t~sv~~~l~~v~~~i~s~~~f~e~~t~~~----~iG~~lvi~Gv~ly~~~~~~~~ 395 (404)
.+-.+.|...++.++..+.- +.-+.+-++-+-+.++++++|||--+..+ .+..++++.|+++.++.++.+|
T Consensus 67 ~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk 142 (288)
T COG4975 67 AFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNK 142 (288)
T ss_pred hHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccc
Confidence 66666677777777766433 34455667888999999999999877665 3456778888888777666433
No 102
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.90 E-value=25 Score=33.69 Aligned_cols=130 Identities=17% Similarity=0.164 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC-hh--hHHHHHHHHHHHHHHHHHHH--hcchhhhhcchhhhhhhhchHHHHHHH
Q 015563 246 FISAMISNISFTYRSIYSKKAMTDMD-ST--NIYAYISIIALFVCIPPAII--VEGPQLIKHGLSDAISKVGMVKFISDL 320 (404)
Q Consensus 246 ~ll~l~s~l~~a~~~v~~kk~~~~~~-~~--~~~~~~~~~~~~~l~~~~l~--~e~~~~~~~~~~~~~~~~~~~~~~~~l 320 (404)
...++.-+++..+-.+..|.....++ |. .++.+|++.+.+.+...-.. .+.+.+ ++..... .
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l---~~~~~kk----------~ 80 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPL---DLRTAKK----------W 80 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCc---ChHHHHH----------H
Confidence 44444444555555566777665544 22 44457888776655543322 122211 2222111 1
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 015563 321 FWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 388 (404)
Q Consensus 321 ~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~ 388 (404)
+-..++.++..+.....+++.+--.+.+...+.++++.+...++||..++...+......++|...+.
T Consensus 81 ~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~ 148 (314)
T KOG1444|consen 81 FPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA 148 (314)
T ss_pred ccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence 11233333444455667788888889999999999999999999999999999999999999887654
No 103
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.80 E-value=19 Score=28.19 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=26.3
Q ss_pred HHHHHHHhCCccchhhHHHHHHHHHHHHHH
Q 015563 358 IGFSILAFGNKISTQTGIGTVIAIAGVAAY 387 (404)
Q Consensus 358 ~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly 387 (404)
+.+|+++++|++.|..+.|..++..|+...
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 458999999999999999999999888653
No 104
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=78.77 E-value=8.1 Score=30.68 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCccchhhHHHHHHHHHHHHH
Q 015563 357 VIGFSILAFGNKISTQTGIGTVIAIAGVAA 386 (404)
Q Consensus 357 ~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~l 386 (404)
-..+++++++|++++..+.|.++++++++.
T Consensus 76 F~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 76 FAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred eHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 345889999999999999999999888653
No 105
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=78.08 E-value=16 Score=34.49 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHH
Q 015563 325 MFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAY 387 (404)
Q Consensus 325 l~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly 387 (404)
+|-.......|..+..+++..+.+..-.-.+++-+++.-+++..++..||+|+..+.+|....
T Consensus 94 l~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviV 156 (372)
T KOG3912|consen 94 LCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIV 156 (372)
T ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhhee
Confidence 333333333444556667777777777778899999999999999999999999999999864
No 106
>PRK02237 hypothetical protein; Provisional
Probab=77.65 E-value=35 Score=27.33 Aligned_cols=40 Identities=10% Similarity=0.025 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCC
Q 015563 199 LEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE 238 (404)
Q Consensus 199 ~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~ 238 (404)
...+...+..+.+-|+|++++++++..++++|+.++.+.+
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 3344555778888999999999999999999998876543
No 107
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.03 E-value=2.1 Score=40.93 Aligned_cols=120 Identities=16% Similarity=0.103 Sum_probs=76.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHH
Q 015563 240 SFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISD 319 (404)
Q Consensus 240 ~~~~~G~ll~l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~ 319 (404)
..+..|.++++.+.++.+...++.||...+......- ..+++. ++ . ..+.|+.
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~r----------------a~~gg~----~y------l-~~~~Ww~ 69 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLR----------------AGEGGY----GY------L-KEPLWWA 69 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHHhhhccc----------------ccCCCc----ch------h-hhHHHHH
Confidence 3456888899999999888888888876443221000 001100 00 0 0012222
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHH
Q 015563 320 LFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 389 (404)
Q Consensus 320 l~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~ 389 (404)
-+..-..+=..|+..| ...++....-.+.+..++..+++.++++|++++...+|++++++|..+...
T Consensus 70 G~ltm~vGei~NFaAY---aFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 70 GMLTMIVGEIANFAAY---AFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHHHHhHhhHHHH---hhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 2222233445555555 455555566677788899999999999999999999999999999876543
No 108
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=73.21 E-value=46 Score=26.59 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCC
Q 015563 199 LEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE 238 (404)
Q Consensus 199 ~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~ 238 (404)
...+...+..+.+-|++++++++++..++++|+.++.+.+
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 3455566778888899999999999999999999876543
No 109
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=70.87 E-value=52 Score=30.08 Aligned_cols=66 Identities=11% Similarity=0.144 Sum_probs=52.6
Q ss_pred HHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHhhHH
Q 015563 331 NQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEE 396 (404)
Q Consensus 331 ~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~~~~ 396 (404)
.+..-+.++..+--.+.++.++..++....-+.+||.+++.......++.+...+.-++...+...
T Consensus 82 Iyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~ 147 (309)
T COG5070 82 IYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASA 147 (309)
T ss_pred HHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHH
Confidence 334456667777777888888888888888999999999999999999999888887776665433
No 110
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=66.73 E-value=15 Score=34.57 Aligned_cols=130 Identities=14% Similarity=0.166 Sum_probs=76.3
Q ss_pred chhHHHHHHHHH-HHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHH-------HH--hCCCC--cc---chHH
Q 015563 106 PALVTGFFFFMW-YFLNVIFNILNKRIYNYF-PYPYFVSVIHLLVGVVYCLVS-------WA--VGLPK--RA---LLIP 169 (404)
Q Consensus 106 ~~l~~~~~~~~~-~~~~~~~~~~nK~~l~~f-~~P~~lt~~r~~~~~l~~~~~-------~~--~~~~~--~~---~~~~ 169 (404)
..+.+++.++.. .+.+..+.++|+..++.+ .+|=.-.++..+......+.+ |. ...+. -+ ..+|
T Consensus 160 ~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP 239 (330)
T KOG1583|consen 160 FWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVP 239 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCcccc
Confidence 344444444443 445677788999998863 345444444443332211111 00 01110 11 3366
Q ss_pred HHHHHHHH-HHHHHhhhccchh-------hHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhc
Q 015563 170 VAVCHALG-HVTSNVSFAAVAV-------SFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 235 (404)
Q Consensus 170 ~a~~~~~~-~~l~~~al~~~sv-------s~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~ 235 (404)
....+.+. ...++.+.+.+.. =+.+++..+-=++..+++.+.++..++++.|+|.+++++|..+.+
T Consensus 240 ~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 240 SMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 66666543 4455556555322 223344455667888899999999999999999999999998864
No 111
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=62.52 E-value=78 Score=25.24 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHh-hhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhh
Q 015563 174 HALGHVTSNVSFAAVAVSFTHTIKA-LEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSM 233 (404)
Q Consensus 174 ~~~~~~l~~~al~~~svs~~~ii~~-~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l 233 (404)
|.+....+-.+.+..+.+---++.= .+...-+.++.+++||++++....+-+++++++.+
T Consensus 45 Y~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 45 YCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 3444444455555544443333322 22333456778999999999999999888777654
No 112
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=62.34 E-value=2 Score=39.73 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHH
Q 015563 321 FWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAA 386 (404)
Q Consensus 321 ~~~gl~~~~~~~~~~~~l~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~l 386 (404)
++.++.-.-.|+....+-++++-+.......-..+..++++|++++.+-.+.++.|.+++++|+..
T Consensus 82 illa~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~Gvvm 147 (336)
T KOG2766|consen 82 ILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVM 147 (336)
T ss_pred hheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEE
Confidence 333443334455555666888888889999999999999999999999999999999999999864
No 113
>PRK02237 hypothetical protein; Provisional
Probab=56.24 E-value=21 Score=28.51 Aligned_cols=45 Identities=18% Similarity=0.098 Sum_probs=37.7
Q ss_pred HHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHH
Q 015563 346 HAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 390 (404)
Q Consensus 346 ~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~ 390 (404)
++..+-+-.+.+++..+.+-|++++...++|..++++|+.+..+.
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 455555667888899999999999999999999999999876543
No 114
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=53.66 E-value=17 Score=24.58 Aligned_cols=28 Identities=7% Similarity=0.108 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 015563 374 GIGTVIAIAGVAAYSYIKAQMEEEKRQM 401 (404)
Q Consensus 374 ~iG~~lvi~Gv~ly~~~~~~~~~~~~~~ 401 (404)
++-..++++|+++|.+.++++++.++.+
T Consensus 16 l~~~~~~Figiv~wa~~p~~k~~f~eaa 43 (48)
T cd01324 16 LLYLALFFLGVVVWAFRPGRKKAFDEAA 43 (48)
T ss_pred HHHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 3345788899999999988776655543
No 115
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=52.43 E-value=20 Score=28.55 Aligned_cols=45 Identities=22% Similarity=0.148 Sum_probs=37.8
Q ss_pred HHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHH
Q 015563 346 HAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 390 (404)
Q Consensus 346 ~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~ 390 (404)
++..+-+-.+.+++.++.+-+++++...++|..+++.|+.+..+.
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 455555667889999999999999999999999999999876543
No 116
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=51.00 E-value=1.5e+02 Score=28.07 Aligned_cols=50 Identities=12% Similarity=0.128 Sum_probs=40.7
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCC
Q 015563 189 AVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE 238 (404)
Q Consensus 189 svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~ 238 (404)
.+..+.++...-=-.+.+++++++.+.++....-+.++++.|+.+-.+++
T Consensus 285 GA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 285 GALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred chhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 44555555566667788999999999999999999999999999877665
No 117
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=48.26 E-value=23 Score=28.06 Aligned_cols=38 Identities=16% Similarity=0.057 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccC
Q 015563 200 EPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT 237 (404)
Q Consensus 200 ~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~ 237 (404)
..+...+..++.-|++++++++++..+.++|+.++.+.
T Consensus 68 yI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 68 YIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 34445566777889999999999999999999877654
No 118
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=46.99 E-value=2.8e+02 Score=26.84 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=38.2
Q ss_pred hccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhh
Q 015563 185 FAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 234 (404)
Q Consensus 185 l~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~ 234 (404)
+..+++-+.++..--.-+.+.+++..+++++++...|+++.+...|+..-
T Consensus 264 l~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 264 LSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred eeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 34555555555555566777888888999999999999999999988875
No 119
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.60 E-value=7.6 Score=36.44 Aligned_cols=111 Identities=17% Similarity=0.225 Sum_probs=68.4
Q ss_pred CC-hhhHHHHHHHHHHHHHHHHHHHh-cchhhhh-cchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHH
Q 015563 270 MD-STNIYAYISIIALFVCIPPAIIV-EGPQLIK-HGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTH 346 (404)
Q Consensus 270 ~~-~~~~~~~~~~~~~~~l~~~~l~~-e~~~~~~-~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~l~~~sa~t~ 346 (404)
+| |.-+.+|+.+....++..+.... -.+.... ...+ .+... ...+.=..+...++..+-..+++.++-..+
T Consensus 58 Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~-----ldl~t-~r~vlplsvVfi~mI~fnnlcL~yVgVaFY 131 (347)
T KOG1442|consen 58 LDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQ-----LDLAT-ARQVLPLSVVFILMISFNNLCLKYVGVAFY 131 (347)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCccc-----ccHHH-HHhhcchhheeeeehhccceehhhcceEEE
Confidence 44 45667778888877776655433 1111111 0111 01100 111111222222333334567788888888
Q ss_pred HHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHH
Q 015563 347 AVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAA 386 (404)
Q Consensus 347 sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~l 386 (404)
-+...+..++++++++++++++-+..-..++.+++.|..+
T Consensus 132 yvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 132 YVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL 171 (347)
T ss_pred EeccchhhhHHHHhHHhhcccccccccceeehhheehhee
Confidence 8899999999999999999999998888888888888765
No 120
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=43.40 E-value=57 Score=21.50 Aligned_cols=9 Identities=33% Similarity=0.659 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 015563 382 AGVAAYSYI 390 (404)
Q Consensus 382 ~Gv~ly~~~ 390 (404)
.|..+|...
T Consensus 21 iGl~IyQki 29 (49)
T PF11044_consen 21 IGLSIYQKI 29 (49)
T ss_pred HHHHHHHHH
Confidence 344455533
No 121
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=41.40 E-value=1.7e+02 Score=22.80 Aligned_cols=62 Identities=10% Similarity=0.141 Sum_probs=34.5
Q ss_pred HHhhccChhHHHHHhHhHHHHHHHHHHHH---hCCc-cchhhHHHHHHHHHHHHHHHHHHHhhHHH
Q 015563 336 NTLERVAPLTHAVGNVLKRVFVIGFSILA---FGNK-ISTQTGIGTVIAIAGVAAYSYIKAQMEEE 397 (404)
Q Consensus 336 ~~l~~~sa~t~sv~~~l~~v~~~i~s~~~---f~e~-~t~~~~iG~~lvi~Gv~ly~~~~~~~~~~ 397 (404)
.+++++.-+..-....+.-++.++++.+. .++. +-...|.|.+.-+++..++....+|.+|.
T Consensus 23 q~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~~ 88 (93)
T PF06946_consen 23 QAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKKY 88 (93)
T ss_pred HHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhhc
Confidence 34466554333444444455666665543 3322 33345888888888888877666554443
No 122
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=40.99 E-value=42 Score=22.55 Aligned_cols=26 Identities=8% Similarity=0.175 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Q 015563 374 GIGTVIAIAGVAAYSYIKAQMEEEKR 399 (404)
Q Consensus 374 ~iG~~lvi~Gv~ly~~~~~~~~~~~~ 399 (404)
.+-..+++.|+++|.+.++++++-++
T Consensus 15 ~v~~~~~F~gi~~w~~~~~~k~~~e~ 40 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAYRPRNKKRFEE 40 (49)
T ss_pred HHHHHHHHHHHHHHHHcccchhhHHH
Confidence 34455677888889887776544333
No 123
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=40.15 E-value=40 Score=25.74 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=22.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhH
Q 015563 368 KISTQTGIGTVIAIAGVAAYSYIKAQME 395 (404)
Q Consensus 368 ~~t~~~~iG~~lvi~Gv~ly~~~~~~~~ 395 (404)
..++..++|+.++++|..+|..+..+.+
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pe 31 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPE 31 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 4678899999999999999986655544
No 124
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=37.04 E-value=40 Score=26.89 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhhccchhhHHHHH-HhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhh
Q 015563 172 VCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 234 (404)
Q Consensus 172 ~~~~~~~~l~~~al~~~svs~~~ii-~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~ 234 (404)
++.-.+..+++.-+++.+.+.+.-+ .++.-.|+.+.+..+-.|......+++..++++|+.+-
T Consensus 60 llNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 60 LLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 3444566778888888888777655 55677788888876555566778889999999998753
No 125
>PRK02935 hypothetical protein; Provisional
Probab=34.66 E-value=1e+02 Score=24.51 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=18.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHh
Q 015563 369 ISTQTGIGTVIAIAGVAAYSYIKAQ 393 (404)
Q Consensus 369 ~t~~~~iG~~lvi~Gv~ly~~~~~~ 393 (404)
++...++|.+.++++..+|-+....
T Consensus 40 m~ifm~~G~l~~l~S~vvYFwiGml 64 (110)
T PRK02935 40 MTIFMLLGFLAVIASTVVYFWIGML 64 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445678888899888888887654
No 126
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.21 E-value=2.3e+02 Score=22.30 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=25.7
Q ss_pred HHHHHHHhCcccChhhHHHHHHHHHhhhhh
Q 015563 205 AAASQFILGQQLPLTLWLSLAPVVIGVSMA 234 (404)
Q Consensus 205 ~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~ 234 (404)
..++.++++|.+.+..+.+-+++.+|+.++
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 457889999999999999998888888764
No 127
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=33.35 E-value=3.2e+02 Score=23.68 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=37.9
Q ss_pred HHHHHhCcccChhhHHHHHH-------HHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015563 207 ASQFILGQQLPLTLWLSLAP-------VVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAM 267 (404)
Q Consensus 207 ~s~l~l~e~~s~~~~l~l~l-------~~~Gv~l~~~~~~~~~~~G~ll~l~s~l~~a~~~v~~kk~~ 267 (404)
....+.|..++.++.+++.+ .+.|+++....+...-....+.++.+++.+++-.++..-+.
T Consensus 88 ~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~~~~f~qsv~~gf~a~lGfslvmvlfA~iR 155 (193)
T COG4657 88 TEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINEGHNFLQSVVYGFGAALGFSLVMVLFAAIR 155 (193)
T ss_pred HHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 44556667778888877764 45677776655543334456666777777777666554443
No 128
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=30.39 E-value=6.4e+02 Score=26.22 Aligned_cols=27 Identities=19% Similarity=-0.058 Sum_probs=14.7
Q ss_pred hhccChhHHHHHhHhHHHHHHHHHHHH
Q 015563 338 LERVAPLTHAVGNVLKRVFVIGFSILA 364 (404)
Q Consensus 338 l~~~sa~t~sv~~~l~~v~~~i~s~~~ 364 (404)
..|+.++...+.....++-..+.|.+.
T Consensus 341 ~GRv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 341 RGRVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344545554555555566666666654
No 129
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=29.95 E-value=2.7e+02 Score=26.19 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=13.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH
Q 015563 369 ISTQTGIGTVIAIAGVAAYSYIK 391 (404)
Q Consensus 369 ~t~~~~iG~~lvi~Gv~ly~~~~ 391 (404)
.+..+++|..+.++-.+.|.+.+
T Consensus 237 v~lGNivGG~v~vgl~Y~~~~~~ 259 (265)
T COG2116 237 VTLGNIVGGAVFVGLMYWYLYRK 259 (265)
T ss_pred HHHhchhcchhhhhHHHHHhccc
Confidence 44556777777666555554443
No 130
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=29.49 E-value=46 Score=31.88 Aligned_cols=138 Identities=13% Similarity=0.076 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHH-HHHHHHhc--chh-hhhcchhhhhhhhchHHHHHHHHHHHH
Q 015563 250 MISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVC-IPPAIIVE--GPQ-LIKHGLSDAISKVGMVKFISDLFWVGM 325 (404)
Q Consensus 250 l~s~l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~~~l-~~~~l~~e--~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gl 325 (404)
+++.+||+.+-..+|-.-++-...+..++=..++.++. +++++... ++. ....++...+.+.++.. +...++.|+
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~s-v~~A~aGGv 80 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPS-VLFAMAGGV 80 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHH-HHHHHHhhH
Confidence 45677888887777765432222222233222333222 22222221 110 00011111123333333 334555566
Q ss_pred HHHHHHHHHHHHhhccCh-hHHHHHhHhHHHHHHHHHHHHhCCccc--hhhHHHHHHHHHHHHHHHH
Q 015563 326 FYHLYNQLATNTLERVAP-LTHAVGNVLKRVFVIGFSILAFGNKIS--TQTGIGTVIAIAGVAAYSY 389 (404)
Q Consensus 326 ~~~~~~~~~~~~l~~~sa-~t~sv~~~l~~v~~~i~s~~~f~e~~t--~~~~iG~~lvi~Gv~ly~~ 389 (404)
..-+.|......+...+- ++.-+...+.-|+.+++-++ .+++.+ ..-+.|.+++++.+++-..
T Consensus 81 vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga~ 146 (336)
T PF07168_consen 81 VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGAA 146 (336)
T ss_pred hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHHH
Confidence 666666655544444432 11222222223333333332 344444 3456688888887776543
No 131
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=28.74 E-value=2.6e+02 Score=23.78 Aligned_cols=12 Identities=25% Similarity=0.105 Sum_probs=6.5
Q ss_pred HHHHHHhCCccc
Q 015563 359 GFSILAFGNKIS 370 (404)
Q Consensus 359 i~s~~~f~e~~t 370 (404)
+...++++|.+.
T Consensus 95 La~~L~~~e~~~ 106 (150)
T COG3086 95 LAQYLFFSELIV 106 (150)
T ss_pred HHHHHhhhhHHH
Confidence 345556666544
No 132
>PF14981 FAM165: FAM165 family
Probab=26.53 E-value=1.3e+02 Score=20.04 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhH
Q 015563 377 TVIAIAGVAAYSYIKAQME 395 (404)
Q Consensus 377 ~~lvi~Gv~ly~~~~~~~~ 395 (404)
.++.++|+=+|...+...+
T Consensus 20 lClaFAgvK~yQ~krlEak 38 (51)
T PF14981_consen 20 LCLAFAGVKMYQRKRLEAK 38 (51)
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4677889999987654433
No 133
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=24.48 E-value=6.4e+02 Score=24.27 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHH-HHHHHHHHHHh
Q 015563 219 TLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNI-SFTYRSIYSKK 265 (404)
Q Consensus 219 ~~~l~l~l~~~Gv~l~~~~~~~~~~~G~ll~l~s~l-~~a~~~v~~kk 265 (404)
....+++.++.|.+++.....++|+.-+++.+++++ ..+..|+..+.
T Consensus 14 tl~~s~~pvllG~a~a~~~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy 61 (317)
T PRK13387 14 TKIASFFPVILGTLFSLYVAKIFDWLLFLAFMVAMLAFDIATTAINNY 61 (317)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445788889999998865555777755556655544 56666666554
No 134
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=24.22 E-value=5.9e+02 Score=23.78 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHHHHHHHHHH-HHhCCCCcc-chHHHHHHHHHHHHHHHhhhccchhhHHHHHHhhhHHHHHHH-HHH-Hh
Q 015563 137 YPYFVSVIHLLVGVVYCLVS-WAVGLPKRA-LLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAA-SQF-IL 212 (404)
Q Consensus 137 ~P~~lt~~r~~~~~l~~~~~-~~~~~~~~~-~~~~~a~~~~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~-s~l-~l 212 (404)
++++.-++.+....+..++. ...+.|+-. .-.+-|.+.+.++.+..-.++.+..+....+=++.-+.+--. +.+ ++
T Consensus 26 Dg~~fQw~~~~~i~~~g~~v~~~~~~p~f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlF 105 (254)
T PF07857_consen 26 DGFFFQWVMCSGIFLVGLVVNLILGFPPFYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLF 105 (254)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCCCcceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceec
Confidence 46666666655544443332 233333333 445556777888888888999999999999877755444333 222 33
Q ss_pred C---c--ccChhhHHHHHHHHHhhhhhc
Q 015563 213 G---Q--QLPLTLWLSLAPVVIGVSMAS 235 (404)
Q Consensus 213 ~---e--~~s~~~~l~l~l~~~Gv~l~~ 235 (404)
+ | +-++..+++++++++|.++..
T Consensus 106 g~~~~~~~~~~Ln~~G~~l~~~~~~~f~ 133 (254)
T PF07857_consen 106 GLDPQVPSSPWLNYIGVALVLVSGIIFS 133 (254)
T ss_pred cccccccchhHHHHHHHHHHHHHHHhee
Confidence 3 2 335677888888888888763
No 135
>COG3162 Predicted membrane protein [Function unknown]
Probab=23.57 E-value=2e+02 Score=22.70 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=37.9
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc--CC----ChHHHHHHHHHHHHHHHHHHH
Q 015563 102 FDRYPALVTGFFFFMWYFLNVIFNILNKRIYNY--FP----YPYFVSVIHLLVGVVYCLVSW 157 (404)
Q Consensus 102 ~~~~~~l~~~~~~~~~~~~~~~~~~~nK~~l~~--f~----~P~~lt~~r~~~~~l~~~~~~ 157 (404)
+.++=.+.+.+.++.||+..+...-++|..+.. ++ ..+-+...+++.+.++..++.
T Consensus 21 kr~~Fa~~ltl~flv~Y~~filLiaf~~~~l~tp~~~~~Vt~Gip~gvg~fv~tfVlt~IYv 82 (102)
T COG3162 21 KRRRFAVPLTLIFLVVYFGFILLIAFAPGWLATPLFGASVTRGIPFGVGVFVMTFVLTGIYV 82 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCcccCCceehhHhHHHHHHHHHHHHHHHHh
Confidence 333446778888899999888888788866653 22 345566677777777666554
No 136
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=23.22 E-value=95 Score=20.36 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=17.5
Q ss_pred hCCccchhhHHHHHHHHH-HHHHHHHHHHh
Q 015563 365 FGNKISTQTGIGTVIAIA-GVAAYSYIKAQ 393 (404)
Q Consensus 365 f~e~~t~~~~iG~~lvi~-Gv~ly~~~~~~ 393 (404)
|+++..+...+.++.+++ +++.+.+..++
T Consensus 7 F~s~vGL~Sl~vI~~~igm~~~~~~~F~~k 36 (42)
T PF11346_consen 7 FGSDVGLMSLIVIVFTIGMGVFFIRYFIRK 36 (42)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888877777766653 33333444444
No 137
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=22.29 E-value=5.6e+02 Score=22.81 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=35.2
Q ss_pred CcccChhhHHHHHHHHHhhhhhcc-----CC--CcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015563 213 GQQLPLTLWLSLAPVVIGVSMASL-----TE--LSFNWTGFISAMISNISFTYRSIYSKKAM 267 (404)
Q Consensus 213 ~e~~s~~~~l~l~l~~~Gv~l~~~-----~~--~~~~~~G~ll~l~s~l~~a~~~v~~kk~~ 267 (404)
++|++.++.+.+.....-+.++.. -. .+..+--+.+.+++++..|++..+.||..
T Consensus 156 sqr~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~~L~pi~l~IiGav~lalRfylkkk~N 217 (226)
T COG4858 156 SQRPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNPQLPPIALTIIGAVILALRFYLKKKKN 217 (226)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcCCchHHHHHHHHHHHHHHHHHHHhhc
Confidence 568888887766555444433321 11 22234567788899999999988888763
No 138
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=21.28 E-value=1.2e+02 Score=22.06 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhHHHH
Q 015563 380 AIAGVAAYSYIKAQMEEEK 398 (404)
Q Consensus 380 vi~Gv~ly~~~~~~~~~~~ 398 (404)
.+++.+...+.|.++.+++
T Consensus 45 ~~lt~ltN~YFK~k~drr~ 63 (68)
T PF04971_consen 45 GLLTYLTNLYFKIKEDRRK 63 (68)
T ss_pred HHHHHHhHhhhhhhHhhhH
Confidence 3444444445565554444
No 139
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.24 E-value=2.5e+02 Score=23.10 Aligned_cols=13 Identities=8% Similarity=0.033 Sum_probs=5.6
Q ss_pred HhHHHHHHHHHHH
Q 015563 351 VLKRVFVIGFSIL 363 (404)
Q Consensus 351 ~l~~v~~~i~s~~ 363 (404)
++-|++.++++.+
T Consensus 75 Y~lPll~li~g~~ 87 (135)
T PF04246_consen 75 YLLPLLALIAGAV 87 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 140
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=21.09 E-value=1.1e+02 Score=25.55 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=25.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015563 239 LSFNWTGFISAMISNISFTYRSIYSKKAMTD 269 (404)
Q Consensus 239 ~~~~~~G~ll~l~s~l~~a~~~v~~kk~~~~ 269 (404)
.+.+..|+++.-+-.+.|++|.++.|.+-++
T Consensus 101 lsn~~LgwIL~gVf~lIWslY~~~~~~l~ed 131 (138)
T PF07123_consen 101 LSNNLLGWILLGVFGLIWSLYFVYTSTLDED 131 (138)
T ss_pred ccCchhHHHHHHHHHHHHHHHHhhccccCCC
Confidence 3567889999999999999999999987544
No 141
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=20.38 E-value=2.4e+02 Score=23.34 Aligned_cols=40 Identities=20% Similarity=0.431 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHH
Q 015563 106 PALVTGFFFFMWYFLNVIFNILNKRIYNYF-PYPYFVSVIH 145 (404)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~nK~~l~~f-~~P~~lt~~r 145 (404)
+.+.+..++++..+.++.-.++-|.++..+ +||++++-+.
T Consensus 54 e~~~L~v~~vv~V~s~v~N~VL~K~~~~~m~NY~fFL~QlT 94 (130)
T PF08627_consen 54 ENFKLLVYVVVYVVSGVINRVLYKKMTNPMKNYPFFLNQLT 94 (130)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhc
Confidence 455566666665555555557778777775 4899887653
No 142
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.33 E-value=2.6e+02 Score=23.19 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=17.4
Q ss_pred HHHHHHHHhhhhhccCCCcchHHHHHHHHH
Q 015563 222 LSLAPVVIGVSMASLTELSFNWTGFISAMI 251 (404)
Q Consensus 222 l~l~l~~~Gv~l~~~~~~~~~~~G~ll~l~ 251 (404)
++.+++.+|+.++.-.....+..|+.+.++
T Consensus 75 vs~vLil~g~~la~t~~~~i~~ig~~l~li 104 (143)
T COG3296 75 VSFVLILAGVFLAATDISFIIIIGFFLTLI 104 (143)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 566677777776654443345566655433
No 143
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=20.23 E-value=7.5e+02 Score=23.44 Aligned_cols=47 Identities=9% Similarity=0.014 Sum_probs=29.3
Q ss_pred chhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhh
Q 015563 188 VAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 234 (404)
Q Consensus 188 ~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~ 234 (404)
-......++.....+++|++.+-...-|.+.+-.-.+...+.|+++.
T Consensus 144 pGIv~qAvl~T~~vf~~ml~lYk~g~IrvT~kf~~iv~~a~~gi~~~ 190 (274)
T PF12811_consen 144 PGIVFQAVLGTFGVFAVMLALYKTGIIRVTPKFRRIVMIATFGIALF 190 (274)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhCCeeechHHHHHHHHHHHHHHHH
Confidence 44555566666667777777766655577766555555566666544
Done!