Query 015563
Match_columns 404
No_of_seqs 273 out of 2201
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 14:47:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.3 1.1E-05 3.9E-10 64.3 12.4 71 168-238 34-105 (110)
2 2i68_A Protein EMRE; transmemb 98.2 3.5E-06 1.2E-10 69.8 7.9 62 330-391 43-105 (137)
3 2i68_A Protein EMRE; transmemb 98.2 4.7E-06 1.6E-10 69.1 8.4 72 167-238 33-105 (137)
4 3b5d_A Multidrug transporter E 97.8 0.00013 4.4E-09 58.1 9.1 60 332-391 45-105 (110)
5 3l1l_A Arginine/agmatine antip 40.1 69 0.0024 30.4 7.7 24 372-395 409-432 (445)
6 2rdd_B UPF0092 membrane protei 37.1 47 0.0016 20.1 3.8 21 380-400 11-31 (37)
7 3ne5_A Cation efflux system pr 8.5 7E+02 0.024 26.8 7.7 36 347-382 907-942 (1054)
8 4dx5_A Acriflavine resistance 8.2 1.2E+03 0.042 24.8 9.5 39 346-385 900-938 (1057)
9 3aqp_A Probable secdf protein- 7.5 1.7E+03 0.057 22.8 10.3 76 321-396 570-651 (741)
10 3tds_E Formate/nitrite transpo 7.3 1.1E+03 0.039 20.7 11.0 200 192-399 36-266 (268)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.29 E-value=1.1e-05 Score=64.28 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHH-HhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCC
Q 015563 168 IPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE 238 (404)
Q Consensus 168 ~~~a~~~~~~~~l~~~al~~~svs~~~ii-~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~ 238 (404)
+...+++.++..+...+++++|++.+..+ ..+.|+++++++++++||+++..+++++.++++|+++....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33344567888889999999999999888 899999999999999999999999999999999999886654
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.21 E-value=3.5e-06 Score=69.85 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=42.8
Q ss_pred HHHHHHHHhhccChhHHHHH-hHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHH
Q 015563 330 YNQLATNTLERVAPLTHAVG-NVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 391 (404)
Q Consensus 330 ~~~~~~~~l~~~sa~t~sv~-~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~ 391 (404)
..++...++++.++...... ..+.+++++++++++|||++++.+++|++++++|+++.+..+
T Consensus 43 s~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 43 SFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34455677799988877665 899999999999999999999999999999999999988654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.19 E-value=4.7e-06 Score=69.09 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhHHHHH-HhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCC
Q 015563 167 LIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE 238 (404)
Q Consensus 167 ~~~~a~~~~~~~~l~~~al~~~svs~~~ii-~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~ 238 (404)
.+...+++.++.++.+.++++++++.+..+ ..+.|++++++++++++|++++.++++++++++|+++....+
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344445577888999999999999999888 999999999999999999999999999999999999886543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.76 E-value=0.00013 Score=58.10 Aligned_cols=60 Identities=20% Similarity=0.180 Sum_probs=50.3
Q ss_pred HHHHHHhhccChhHHHHH-hHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHH
Q 015563 332 QLATNTLERVAPLTHAVG-NVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 391 (404)
Q Consensus 332 ~~~~~~l~~~sa~t~sv~-~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~ 391 (404)
+....++++.+....... ..+.++.+.++++++|||++|+.+++|++++++|+...+..+
T Consensus 45 ~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344556788877776444 889999999999999999999999999999999999876543
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=40.09 E-value=69 Score=30.44 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhH
Q 015563 372 QTGIGTVIAIAGVAAYSYIKAQME 395 (404)
Q Consensus 372 ~~~iG~~lvi~Gv~ly~~~~~~~~ 395 (404)
..+.|.++++.|+.+|.+.+++.+
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 456788889999999987766544
No 6
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=37.12 E-value=47 Score=20.07 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHh
Q 015563 380 AIAGVAAYSYIKAQMEEEKRQ 400 (404)
Q Consensus 380 vi~Gv~ly~~~~~~~~~~~~~ 400 (404)
++.+++.+-..+.+.|++|+.
T Consensus 11 ~~~~ifYFl~iRPQ~Kr~K~~ 31 (37)
T 2rdd_B 11 VFGLIFYFMILRPQQKRTKEH 31 (37)
T ss_dssp HHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHH
Confidence 333444444445454444443
No 7
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=8.48 E-value=7e+02 Score=26.80 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=25.4
Q ss_pred HHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHH
Q 015563 347 AVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIA 382 (404)
Q Consensus 347 sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~ 382 (404)
.+....-.++..+....++|.+++....+|.++.++
T Consensus 907 il~~ip~~~~g~~~~l~l~g~~l~~~~~~g~i~l~G 942 (1054)
T 3ne5_A 907 IISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAG 942 (1054)
T ss_dssp HHTTSHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHH
Confidence 333444445566677788999999999999876653
No 8
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=8.15 E-value=1.2e+03 Score=24.85 Aligned_cols=39 Identities=15% Similarity=0.041 Sum_probs=27.0
Q ss_pred HHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHH
Q 015563 346 HAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVA 385 (404)
Q Consensus 346 ~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ 385 (404)
..+....-.++..+.+..++|.+++...++|.++.+ |+.
T Consensus 900 ~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~-Gi~ 938 (1057)
T 4dx5_A 900 SVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTI-GLS 938 (1057)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHH-HHH
Confidence 334444445566667778899999999999987665 443
No 9
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=7.47 E-value=1.7e+03 Score=22.75 Aligned_cols=76 Identities=11% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhh-ccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHH-----HHHHHHHHHHhh
Q 015563 321 FWVGMFYHLYNQLATNTLE-RVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIA-----GVAAYSYIKAQM 394 (404)
Q Consensus 321 ~~~gl~~~~~~~~~~~~l~-~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~-----Gv~ly~~~~~~~ 394 (404)
...++...+.-...+..++ ........+....-.++..+....++|.+++...++|..++++ ++.++.+.+...
T Consensus 570 ~~~al~lali~i~l~l~~~Fs~~~~l~~l~~l~~~~~~~~g~l~l~g~~l~~~~i~~~l~liGisvd~~I~l~~r~re~~ 649 (741)
T 3aqp_A 570 AVMAVLVGLGLILLYVAFRFDWTFGVASILAVAHDVAIVAGMYSLLGLEFSIPTIAALLTIVGYSINDSIVVSDRIRENQ 649 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhhcceEEehHHHHHHH
Q ss_pred HH
Q 015563 395 EE 396 (404)
Q Consensus 395 ~~ 396 (404)
++
T Consensus 650 ~~ 651 (741)
T 3aqp_A 650 KL 651 (741)
T ss_dssp HH
T ss_pred Hh
No 10
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=7.34 E-value=1.1e+03 Score=20.68 Aligned_cols=200 Identities=9% Similarity=-0.036 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc--CC
Q 015563 192 FTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAM--TD 269 (404)
Q Consensus 192 ~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~~~~~~G~ll~l~s~l~~a~~~v~~kk~~--~~ 269 (404)
.+...-+..-++......-+-++.++..+.++-+.--+|.+++...+.+. +-++..+....++.||.. +-
T Consensus 36 ~AG~~I~~g~~~~~~v~~~~~~~~~g~~~ll~g~~F~~Gl~lVvl~g~eL--------fTgn~l~~~~~~~~~~~s~~~~ 107 (268)
T 3tds_E 36 FAGLYVGIGILLIFTIGGLLTDAGSPMTKIVMGLSFAIALSLVIMTGTEL--------FTGNNMVMSAGMLNKGVSIKDT 107 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHTCTHHHHHHHHHTCCC--------HHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHhCccc--------cccchHHHHHHHHcCCCcHHHH
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhcc--hhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhccChh---
Q 015563 270 MDSTNIYAYISIIALFVCIPPAIIVEG--PQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPL--- 344 (404)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~l~~e~--~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~l~~~sa~--- 344 (404)
...|...+.-++++.++..-+...... .........+...+.....++..++-.-+|.++.....+...+-.+..
T Consensus 108 lr~W~~v~~gNliGa~~~a~l~~~sg~~~~~~~~~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~~~~k~~~gKi 187 (268)
T 3tds_E 108 SKIWAYSWVGNLIGALVLGIIFVGTGLVDKGPVAEFFANTAASKASMPFTALFFRGILCNILVCVSVLCSFRTNSDTAKI 187 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHH
Q ss_pred ---------------HHHHHhHhHHHHHHHHH---------HHHhCCccchhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 015563 345 ---------------THAVGNVLKRVFVIGFS---------ILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEKR 399 (404)
Q Consensus 345 ---------------t~sv~~~l~~v~~~i~s---------~~~f~e~~t~~~~iG~~lvi~Gv~ly~~~~~~~~~~~~ 399 (404)
.|++.|...-..+++.+ ++..=-+.+..+++|..+.++..+.|.+.|+.+...+.
T Consensus 188 ~~i~~pi~~Fv~~GfEH~VANm~~~~~~~~~~~~~~~t~~~~~~nlipvtlGNiiGG~~fvgl~y~~~~~~~~~~~~~~ 266 (268)
T 3tds_E 188 IMIFLCLFAIITSGFEHSVANMTIYSVSLFSPTISTVTIGGAIYNLVAVTLGNIVGGALFMGLGTYILGKEKLNAAAEN 266 (268)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHSSSCCSCCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHCCC-------
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccc
Done!