Query 015563
Match_columns 404
No_of_seqs 273 out of 2201
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 14:47:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015563.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015563hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 12.1 4.1E+02 0.03 22.7 23.2 64 201-266 239-304 (383)
2 d1pv7a_ f.38.1.2 (A:) Lactose 10.0 3.9E+02 0.028 21.2 9.5 10 125-134 28-37 (417)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 9.3 1.2E+02 0.0086 15.2 2.3 18 244-261 3-20 (27)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 7.4 5.2E+02 0.038 20.5 8.0 54 166-223 4-57 (248)
5 d1iwga8 f.35.1.1 (A:513-566,A: 6.1 5.5E+02 0.04 19.6 10.3 31 355-385 95-125 (222)
6 d1iwga7 f.35.1.1 (A:7-37,A:331 5.5 5.6E+02 0.041 19.1 10.0 50 339-388 61-110 (199)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 2.4 2.1E+02 0.016 19.2 0.6 21 375-395 37-57 (100)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 2.3 4.9E+02 0.036 13.0 3.7 9 361-369 19-27 (30)
9 d1v54k_ f.23.5.1 (K:) Mitochon 1.8 5.8E+02 0.042 14.7 1.8 26 365-390 4-29 (49)
10 d2axtj1 f.23.32.1 (J:7-40) Pho 1.7 7.2E+02 0.052 13.0 1.9 9 380-388 17-25 (34)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=12.07 E-value=4.1e+02 Score=22.70 Aligned_cols=64 Identities=9% Similarity=-0.002 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCcccChhhHHHHHHHHHhhhhhccCCCcchHHH-HHHHHHHH-HHHHHHHHHHHhh
Q 015563 201 PFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTG-FISAMISN-ISFTYRSIYSKKA 266 (404)
Q Consensus 201 Pvf~~l~s~l~l~e~~s~~~~l~l~l~~~Gv~l~~~~~~~~~~~G-~ll~l~s~-l~~a~~~v~~kk~ 266 (404)
-.++.++...+.++|++......- .+.|.+-++-...-.++++ ++...++. +++-....+.+|.
T Consensus 239 ~~~~~~~~~~~~~~k~~~~~~~nG--~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~ 304 (383)
T d1u7ga_ 239 AILGWIFGEWALRGLPSLLGACSG--AIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLL 304 (383)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHH--HHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHH--hhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhc
Confidence 334444444456677777665542 3455555443333334443 55555544 4444444444443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=10.04 E-value=3.9e+02 Score=21.16 Aligned_cols=10 Identities=0% Similarity=-0.011 Sum_probs=4.7
Q ss_pred HHHHHHHHhc
Q 015563 125 NILNKRIYNY 134 (404)
Q Consensus 125 ~~~nK~~l~~ 134 (404)
.++..++.++
T Consensus 28 ~~l~~~l~~~ 37 (417)
T d1pv7a_ 28 PFFPIWLHDI 37 (417)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 3454454443
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.34 E-value=1.2e+02 Score=15.19 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015563 244 TGFISAMISNISFTYRSI 261 (404)
Q Consensus 244 ~G~ll~l~s~l~~a~~~v 261 (404)
.|.+..-++.++|+.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577777777788877653
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=7.40 E-value=5.2e+02 Score=20.55 Aligned_cols=54 Identities=7% Similarity=-0.051 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHH
Q 015563 166 LLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLS 223 (404)
Q Consensus 166 ~~~~~a~~~~~~~~l~~~al~~~svs~~~ii~~~~Pvf~~l~s~l~l~e~~s~~~~l~ 223 (404)
+++.++++..+..+.....+..-+..+.. ..-+.+.++.++++.+|.-.++++.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhh
Confidence 45666777666666555555555554433 3345566677888888888887764
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.08 E-value=5.5e+02 Score=19.60 Aligned_cols=31 Identities=16% Similarity=-0.002 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCccchhhHHHHHHHHHHHH
Q 015563 355 VFVIGFSILAFGNKISTQTGIGTVIAIAGVA 385 (404)
Q Consensus 355 v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ 385 (404)
++..+.+..+++.+++....+|.++.++...
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v 125 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGLSA 125 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhhhh
Confidence 4455677778899999999888887665444
No 6
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.53 E-value=5.6e+02 Score=19.12 Aligned_cols=50 Identities=22% Similarity=0.111 Sum_probs=35.7
Q ss_pred hccChhHHHHHhHhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 015563 339 ERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 388 (404)
Q Consensus 339 ~~~sa~t~sv~~~l~~v~~~i~s~~~f~e~~t~~~~iG~~lvi~Gv~ly~ 388 (404)
+..-+.........-.+...+....++|.+++.....+..+.++...-++
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~~ 110 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDA 110 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhcccH
Confidence 54555555555656666677777788899999999888888887766553
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.43 E-value=2.1e+02 Score=19.24 Aligned_cols=21 Identities=10% Similarity=0.108 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhH
Q 015563 375 IGTVIAIAGVAAYSYIKAQME 395 (404)
Q Consensus 375 iG~~lvi~Gv~ly~~~~~~~~ 395 (404)
.++.+.+.|...|...+.|.+
T Consensus 37 ~~I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 37 AAITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHhhhhhcc
Confidence 334444556666666555543
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.26 E-value=4.9e+02 Score=12.97 Aligned_cols=9 Identities=11% Similarity=0.025 Sum_probs=4.6
Q ss_pred HHHHhCCcc
Q 015563 361 SILAFGNKI 369 (404)
Q Consensus 361 s~~~f~e~~ 369 (404)
-.+||.|++
T Consensus 19 faiffrepp 27 (30)
T d2axtt1 19 FAIFFREPP 27 (30)
T ss_dssp HHHHTSCCC
T ss_pred HHHHhcCCC
Confidence 344556654
No 9
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.81 E-value=5.8e+02 Score=14.74 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=13.4
Q ss_pred hCCccchhhHHHHHHHHHHHHHHHHH
Q 015563 365 FGNKISTQTGIGTVIAIAGVAAYSYI 390 (404)
Q Consensus 365 f~e~~t~~~~iG~~lvi~Gv~ly~~~ 390 (404)
||++-....++|......++..|...
T Consensus 4 FHdKYGn~vL~~Ga~fc~avW~yv~T 29 (49)
T d1v54k_ 4 FHDKYGNAVLASGATFCVAVWVYMAT 29 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCcEEEecccchhhhhhhheee
Confidence 34444444555555555555555543
No 10
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.66 E-value=7.2e+02 Score=13.04 Aligned_cols=9 Identities=33% Similarity=0.600 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q 015563 380 AIAGVAAYS 388 (404)
Q Consensus 380 vi~Gv~ly~ 388 (404)
.+.|++.|.
T Consensus 17 ~~vG~FfYG 25 (34)
T d2axtj1 17 VIVGLFFYG 25 (34)
T ss_dssp HHHHHHHHH
T ss_pred hheeeeeee
Confidence 345666553
Done!