Query 015564
Match_columns 404
No_of_seqs 248 out of 1278
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:29:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015564.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015564hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2234 Predicted UDP-galactos 100.0 2.7E-58 5.8E-63 444.6 35.4 324 25-354 1-327 (345)
2 PF04142 Nuc_sug_transp: Nucle 100.0 6.8E-44 1.5E-48 338.6 25.6 228 111-340 9-244 (244)
3 TIGR00803 nst UDP-galactose tr 99.9 6.8E-26 1.5E-30 212.4 15.6 218 122-347 2-222 (222)
4 PF08449 UAA: UAA transporter 99.9 2E-23 4.3E-28 204.8 29.9 265 73-354 32-302 (303)
5 PF06027 DUF914: Eukaryotic pr 99.9 1.5E-22 3.2E-27 199.5 29.0 230 117-354 77-310 (334)
6 KOG1581 UDP-galactose transpor 99.9 4.2E-22 9.2E-27 188.7 25.5 300 31-349 4-313 (327)
7 PLN00411 nodulin MtN21 family 99.9 7.1E-20 1.5E-24 183.3 35.2 289 39-349 13-328 (358)
8 PRK15430 putative chlorampheni 99.9 1.7E-18 3.6E-23 169.4 32.7 271 42-347 9-283 (296)
9 PTZ00343 triose or hexose phos 99.9 1.6E-18 3.5E-23 173.4 33.1 256 73-350 78-349 (350)
10 TIGR00817 tpt Tpt phosphate/ph 99.8 3.8E-18 8.2E-23 167.1 30.5 217 121-350 67-294 (302)
11 PRK11453 O-acetylserine/cystei 99.8 1.2E-17 2.6E-22 163.5 32.8 272 46-350 9-288 (299)
12 KOG3912 Predicted integral mem 99.8 2.1E-18 4.5E-23 161.7 24.8 286 58-350 20-335 (372)
13 PRK11272 putative DMT superfam 99.8 4.9E-17 1.1E-21 158.7 33.3 275 37-349 4-285 (292)
14 TIGR00950 2A78 Carboxylate/Ami 99.8 2.3E-16 5E-21 150.4 30.0 205 122-344 49-259 (260)
15 PRK11689 aromatic amino acid e 99.8 7.7E-16 1.7E-20 150.5 29.0 270 45-349 8-287 (295)
16 PRK10532 threonine and homoser 99.8 2.4E-15 5.3E-20 146.8 32.3 267 38-350 11-282 (293)
17 KOG1580 UDP-galactose transpor 99.8 2.5E-17 5.3E-22 151.0 16.0 282 44-348 16-312 (337)
18 TIGR03340 phn_DUF6 phosphonate 99.7 1.6E-15 3.4E-20 147.2 25.2 211 123-346 67-280 (281)
19 COG0697 RhaT Permeases of the 99.7 1.8E-13 3.8E-18 131.3 33.4 210 121-350 72-288 (292)
20 TIGR00688 rarD rarD protein. T 99.6 2.7E-13 5.8E-18 129.6 27.2 248 43-324 4-255 (256)
21 KOG1583 UDP-N-acetylglucosamin 99.5 1.3E-14 2.9E-19 136.1 6.2 231 121-356 66-321 (330)
22 KOG4510 Permease of the drug/m 99.5 1.1E-14 2.3E-19 136.1 4.5 209 131-347 109-323 (346)
23 KOG1582 UDP-galactose transpor 99.5 3.8E-12 8.2E-17 119.4 17.4 220 121-350 108-333 (367)
24 COG2962 RarD Predicted permeas 99.4 5.5E-10 1.2E-14 106.5 29.7 273 42-350 8-284 (293)
25 KOG1441 Glucose-6-phosphate/ph 99.4 4.7E-13 1E-17 130.9 8.9 221 121-353 85-311 (316)
26 KOG2765 Predicted membrane pro 99.3 8.7E-11 1.9E-15 114.9 18.7 224 122-353 162-394 (416)
27 KOG1443 Predicted integral mem 99.3 3.3E-10 7.1E-15 108.3 21.4 263 66-349 39-315 (349)
28 TIGR00776 RhaT RhaT L-rhamnose 99.3 1.6E-09 3.4E-14 105.9 26.6 208 123-347 63-286 (290)
29 KOG1444 Nucleotide-sugar trans 99.2 1.6E-09 3.5E-14 104.5 22.2 223 119-355 77-306 (314)
30 KOG1442 GDP-fucose transporter 99.2 1.2E-11 2.6E-16 116.2 4.1 263 73-351 61-329 (347)
31 KOG2766 Predicted membrane pro 99.1 1.6E-11 3.6E-16 114.3 2.3 213 121-349 80-299 (336)
32 PF03151 TPT: Triose-phosphate 98.9 5.6E-08 1.2E-12 85.2 15.5 138 209-349 1-153 (153)
33 COG2510 Predicted membrane pro 98.7 1.4E-07 3E-12 79.6 10.7 130 48-191 10-139 (140)
34 PF13536 EmrE: Multidrug resis 98.7 4.7E-07 1E-11 75.9 14.0 68 126-194 41-109 (113)
35 PF00892 EamA: EamA-like trans 98.7 2.5E-07 5.4E-12 77.3 11.1 122 53-190 3-125 (126)
36 COG5070 VRG4 Nucleotide-sugar 98.6 3.9E-07 8.5E-12 83.8 10.5 228 121-355 70-302 (309)
37 KOG4314 Predicted carbohydrate 98.6 1.5E-06 3.3E-11 78.6 13.2 216 126-353 60-280 (290)
38 PF03151 TPT: Triose-phosphate 98.5 4.3E-06 9.4E-11 73.1 14.9 145 44-189 3-151 (153)
39 COG5006 rhtA Threonine/homoser 98.5 6.8E-05 1.5E-09 70.6 23.2 205 123-349 75-282 (292)
40 PF05653 Mg_trans_NIPA: Magnes 98.4 1.5E-05 3.3E-10 78.3 17.6 66 127-192 58-123 (300)
41 PF06800 Sugar_transport: Suga 98.3 9.7E-05 2.1E-09 71.0 19.5 211 121-345 47-267 (269)
42 PRK15051 4-amino-4-deoxy-L-ara 98.2 2.3E-05 5E-10 65.7 10.8 68 123-190 41-108 (111)
43 TIGR00950 2A78 Carboxylate/Ami 98.2 5.2E-05 1.1E-09 72.1 14.6 131 42-187 129-260 (260)
44 PF00892 EamA: EamA-like trans 98.1 3.3E-05 7.2E-10 64.3 11.3 118 219-347 2-124 (126)
45 PTZ00343 triose or hexose phos 98.1 5.3E-05 1.1E-09 76.1 14.0 145 42-190 195-347 (350)
46 TIGR00817 tpt Tpt phosphate/ph 98.0 9.5E-05 2.1E-09 72.4 13.6 142 42-192 146-294 (302)
47 COG2510 Predicted membrane pro 97.9 5.9E-05 1.3E-09 63.9 8.6 127 210-347 5-137 (140)
48 PLN00411 nodulin MtN21 family 97.8 0.00073 1.6E-08 68.1 16.4 63 131-193 268-330 (358)
49 PRK02971 4-amino-4-deoxy-L-ara 97.8 0.0017 3.8E-08 55.8 15.6 119 209-350 3-123 (129)
50 PF08449 UAA: UAA transporter 97.8 0.0011 2.5E-08 65.0 16.5 141 42-192 155-298 (303)
51 PRK11689 aromatic amino acid e 97.8 0.00092 2E-08 65.3 15.7 66 127-192 223-288 (295)
52 PRK10532 threonine and homoser 97.7 0.001 2.2E-08 65.0 15.4 64 129-192 219-282 (293)
53 PRK11272 putative DMT superfam 97.7 0.002 4.4E-08 62.8 16.9 64 129-192 223-286 (292)
54 TIGR03340 phn_DUF6 phosphonate 97.7 0.0014 3.1E-08 63.5 15.2 129 210-349 3-135 (281)
55 PRK10452 multidrug efflux syst 97.6 0.0006 1.3E-08 57.9 10.0 72 122-193 33-105 (120)
56 PRK11453 O-acetylserine/cystei 97.6 0.0039 8.4E-08 61.0 17.1 63 131-193 227-289 (299)
57 TIGR00776 RhaT RhaT L-rhamnose 97.6 0.0013 2.8E-08 64.3 13.7 133 38-191 151-288 (290)
58 PRK02971 4-amino-4-deoxy-L-ara 97.5 0.00065 1.4E-08 58.5 9.7 68 126-193 55-124 (129)
59 PRK11431 multidrug efflux syst 97.5 0.0013 2.8E-08 54.6 10.3 70 122-191 32-102 (105)
60 PRK09541 emrE multidrug efflux 97.5 0.0014 3.1E-08 54.8 10.2 71 122-192 33-104 (110)
61 COG2076 EmrE Membrane transpor 97.4 0.0017 3.7E-08 53.6 10.3 71 121-191 32-103 (106)
62 PRK10650 multidrug efflux syst 97.3 0.0025 5.4E-08 53.2 10.2 69 122-190 38-107 (109)
63 PRK15430 putative chlorampheni 97.2 0.015 3.3E-07 56.8 15.5 133 208-348 8-144 (296)
64 TIGR00688 rarD rarD protein. T 97.2 0.016 3.4E-07 55.2 15.3 132 209-347 3-140 (256)
65 PF06800 Sugar_transport: Suga 97.1 0.0082 1.8E-07 57.9 12.9 121 37-180 136-256 (269)
66 PRK15051 4-amino-4-deoxy-L-ara 97.1 0.005 1.1E-07 51.5 9.7 60 289-348 49-108 (111)
67 PRK09541 emrE multidrug efflux 97.0 0.0091 2E-07 49.9 10.4 62 289-350 42-104 (110)
68 PRK10452 multidrug efflux syst 97.0 0.0081 1.8E-07 51.0 10.2 65 286-350 39-104 (120)
69 PF10639 UPF0546: Uncharacteri 97.0 0.0019 4E-08 54.2 6.1 71 119-189 41-112 (113)
70 KOG2922 Uncharacterized conser 96.9 0.0067 1.5E-07 59.2 10.1 68 126-193 71-138 (335)
71 KOG1441 Glucose-6-phosphate/ph 96.8 0.0026 5.5E-08 62.8 6.7 144 36-190 160-306 (316)
72 PF13536 EmrE: Multidrug resis 96.8 0.017 3.6E-07 48.2 10.8 60 289-349 47-106 (113)
73 COG5006 rhtA Threonine/homoser 96.7 0.0056 1.2E-07 57.9 7.4 59 131-189 222-280 (292)
74 PF00893 Multi_Drug_Res: Small 96.6 0.01 2.2E-07 48.0 7.3 59 124-182 34-93 (93)
75 COG0697 RhaT Permeases of the 96.5 0.13 2.9E-06 48.8 16.0 71 122-192 217-288 (292)
76 PRK10650 multidrug efflux syst 96.5 0.16 3.4E-06 42.5 14.2 62 286-347 44-106 (109)
77 PF05653 Mg_trans_NIPA: Magnes 96.4 0.037 7.9E-07 54.5 11.4 115 207-347 6-120 (300)
78 COG2076 EmrE Membrane transpor 96.3 0.044 9.5E-07 45.4 9.6 61 289-349 42-103 (106)
79 PRK13499 rhamnose-proton sympo 96.3 1.4 3.1E-05 44.1 31.6 102 123-224 77-190 (345)
80 PRK11431 multidrug efflux syst 96.3 0.052 1.1E-06 45.0 10.0 61 288-348 40-101 (105)
81 PF06027 DUF914: Eukaryotic pr 95.8 0.41 8.9E-06 47.8 15.7 62 288-349 90-151 (334)
82 PF04657 DUF606: Protein of un 95.5 1.1 2.5E-05 38.8 15.6 130 211-346 4-138 (138)
83 PF07857 DUF1632: CEO family ( 95.3 0.17 3.6E-06 48.6 10.4 65 287-351 65-136 (254)
84 TIGR00803 nst UDP-galactose tr 95.1 0.03 6.5E-07 52.2 4.7 66 122-187 155-220 (222)
85 PF00893 Multi_Drug_Res: Small 94.9 0.13 2.7E-06 41.6 7.3 50 291-340 43-93 (93)
86 COG2962 RarD Predicted permeas 94.4 2 4.3E-05 41.8 15.2 128 48-191 155-283 (293)
87 PF10639 UPF0546: Uncharacteri 94.3 0.11 2.3E-06 43.7 5.7 66 281-346 45-111 (113)
88 KOG1580 UDP-galactose transpor 94.3 0.32 7E-06 45.8 9.3 69 120-188 242-310 (337)
89 PRK13499 rhamnose-proton sympo 94.3 0.76 1.6E-05 46.1 12.7 136 207-349 6-153 (345)
90 PF04142 Nuc_sug_transp: Nucle 93.9 0.44 9.4E-06 45.5 9.8 67 287-353 27-93 (244)
91 KOG1581 UDP-galactose transpor 93.8 0.65 1.4E-05 45.4 10.7 134 41-188 176-310 (327)
92 COG4975 GlcU Putative glucose 91.8 0.039 8.4E-07 52.2 -0.7 130 44-194 5-139 (288)
93 COG3238 Uncharacterized protei 90.6 12 0.00025 33.1 15.4 133 209-349 6-146 (150)
94 KOG2922 Uncharacterized conser 88.5 0.23 5E-06 48.8 1.6 68 278-345 65-132 (335)
95 PF06379 RhaT: L-rhamnose-prot 86.6 15 0.00033 36.7 13.0 136 207-351 6-155 (344)
96 KOG4510 Permease of the drug/m 84.2 0.73 1.6E-05 44.3 2.5 57 292-351 112-171 (346)
97 KOG4831 Unnamed protein [Funct 83.2 3.1 6.7E-05 34.4 5.3 70 119-188 52-122 (125)
98 PF04657 DUF606: Protein of un 78.5 43 0.00094 28.9 14.1 63 123-188 71-138 (138)
99 COG5070 VRG4 Nucleotide-sugar 77.0 17 0.00036 34.4 8.6 68 121-188 226-293 (309)
100 COG4975 GlcU Putative glucose 75.6 0.72 1.6E-05 43.9 -0.6 89 78-180 182-270 (288)
101 PF04342 DUF486: Protein of un 74.6 5.8 0.00012 32.8 4.4 42 305-346 64-105 (108)
102 KOG1444 Nucleotide-sugar trans 74.1 20 0.00043 35.5 8.8 71 121-191 230-300 (314)
103 KOG4831 Unnamed protein [Funct 73.6 4.4 9.5E-05 33.5 3.5 66 282-347 57-123 (125)
104 KOG2765 Predicted membrane pro 67.7 97 0.0021 31.6 12.1 68 127-194 326-393 (416)
105 KOG1442 GDP-fucose transporter 62.8 8.2 0.00018 37.5 3.5 105 78-188 220-324 (347)
106 KOG3912 Predicted integral mem 58.3 1.9E+02 0.0042 28.4 13.3 36 312-347 121-156 (372)
107 TIGR02865 spore_II_E stage II 58.0 3.1E+02 0.0068 30.7 16.4 44 146-189 11-54 (764)
108 PLN00028 nitrate transmembrane 57.8 2.3E+02 0.0051 29.2 14.3 27 373-401 448-474 (476)
109 PF04342 DUF486: Protein of un 57.1 28 0.00061 28.8 5.2 33 156-188 73-105 (108)
110 PF05297 Herpes_LMP1: Herpesvi 56.4 3.7 8E-05 39.8 0.0 96 137-241 41-138 (381)
111 KOG1583 UDP-N-acetylglucosamin 56.0 57 0.0012 31.9 7.8 151 25-190 148-313 (330)
112 COG3169 Uncharacterized protei 55.4 1.2E+02 0.0025 25.0 12.1 44 305-348 71-114 (116)
113 KOG1582 UDP-galactose transpor 54.1 2E+02 0.0043 28.2 11.1 51 143-193 284-334 (367)
114 COG3169 Uncharacterized protei 52.6 1.3E+02 0.0028 24.7 11.2 32 158-189 82-113 (116)
115 KOG1443 Predicted integral mem 48.9 56 0.0012 32.4 6.7 73 117-189 241-313 (349)
116 PRK12324 phosphoribose diphosp 41.6 3.5E+02 0.0076 26.5 14.4 28 310-337 146-173 (295)
117 PF05961 Chordopox_A13L: Chord 40.3 32 0.0007 26.0 2.8 23 332-354 5-27 (68)
118 PF00909 Ammonium_transp: Ammo 39.5 2.2E+02 0.0048 29.0 9.9 77 157-233 161-247 (399)
119 COG0004 AmtB Ammonia permease 38.8 3.4E+02 0.0074 28.0 10.8 76 158-234 172-254 (409)
120 PF02694 UPF0060: Uncharacteri 38.0 2.4E+02 0.0051 23.5 9.9 45 302-346 54-100 (107)
121 PRK14778 lipoprotein signal pe 37.0 3.3E+02 0.0072 24.9 10.7 17 330-346 120-136 (186)
122 PF03348 Serinc: Serine incorp 33.3 4E+02 0.0088 27.6 10.7 16 329-344 283-298 (429)
123 PF03119 DNA_ligase_ZBD: NAD-d 27.3 22 0.00047 22.1 0.1 17 7-23 1-17 (28)
124 PRK10263 DNA translocase FtsK; 26.3 1.2E+03 0.026 28.1 14.8 10 315-324 168-177 (1355)
125 TIGR00836 amt ammonium transpo 25.6 7.5E+02 0.016 25.4 11.3 75 158-233 169-252 (403)
126 COG3238 Uncharacterized protei 25.1 4.8E+02 0.01 23.0 14.2 66 123-191 76-146 (150)
127 PF05077 DUF678: Protein of un 24.8 22 0.00047 27.3 -0.3 23 5-27 25-49 (74)
128 PRK02237 hypothetical protein; 24.6 4.2E+02 0.009 22.1 11.2 43 304-346 58-102 (109)
129 PRK02237 hypothetical protein; 22.9 1.7E+02 0.0036 24.4 4.5 39 154-192 68-106 (109)
130 COG5319 Uncharacterized protei 22.7 29 0.00064 29.6 0.1 15 3-17 30-44 (142)
131 TIGR02098 MJ0042_CXXC MJ0042 f 22.6 41 0.00088 21.9 0.8 13 4-16 24-36 (38)
132 PF06676 DUF1178: Protein of u 21.3 36 0.00077 30.0 0.3 16 2-17 29-44 (148)
133 PF01350 Flavi_NS4A: Flaviviru 21.0 5.7E+02 0.012 22.4 7.8 51 312-362 79-129 (144)
134 PF13347 MFS_2: MFS/sugar tran 20.8 6.6E+02 0.014 25.2 9.6 20 165-184 281-300 (428)
No 1
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-58 Score=444.55 Aligned_cols=324 Identities=30% Similarity=0.470 Sum_probs=269.3
Q ss_pred hhhccCCcccchhhHHHHHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 015564 25 RAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEK 104 (404)
Q Consensus 25 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~ 104 (404)
|++|+|....+.++ ...+.++..++ +.+.+++++|+++.+++.+|.|+++||++|++|+++|..+++++.+.. .++
T Consensus 1 ~~~~~~~~~~~~~~-~k~~~l~~~t~-~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~--~~~ 76 (345)
T KOG2234|consen 1 MAVKSMPIISSLSQ-MKYLSLIVLTA-QNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKY--AKK 76 (345)
T ss_pred CCcccccccccHHH-HHHHHHHHHHH-HHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHH--hhh
Confidence 45666666666665 33344444444 555566677777765588899999999999999999999999986441 112
Q ss_pred CcchH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 015564 105 PLLSI-STFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLL 183 (404)
Q Consensus 105 ~~~~~-~~~~~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~ 183 (404)
+...+ +.++..+|+++++++||++|++|||++|++++|+|++|||+++|+|+++||+|++++|+||++++||.|+++++
T Consensus 77 ~~~~l~~~i~~~~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~ 156 (345)
T KOG2234|consen 77 SLKSLSKEILAAPRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLF 156 (345)
T ss_pred hhhhcCHHHHhChHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 22222 34556678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCCCC--CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 015564 184 IGISVNQLRSLPEGSTA--MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVT 261 (404)
Q Consensus 184 ~Gv~lv~~~~~~~~~~~--~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~ 261 (404)
+|++++|.+...+.+.. ........|..+++.+|++||+||+|+||++|+. +.|.|+||+|||++|+++++..+...
T Consensus 157 ~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s-~~s~wi~NiqL~~~g~~f~~l~~~~~ 235 (345)
T KOG2234|consen 157 AGVALVQLPSLSPTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS-NVSLWIRNIQLYFFGILFNLLTILLQ 235 (345)
T ss_pred HHHHHHhccCCCCCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999995443221111 1122345799999999999999999999999986 68999999999999999999887653
Q ss_pred HHhcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 015564 262 AIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVF 341 (404)
Q Consensus 262 ~~~~g~~~~~~f~g~~~~~~~~i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi 341 (404)
...++. +.|+|+||++.+|++++++|+||+++++++||+|||.|+|++++++++++++|+.+||.+||..+++|+.+|+
T Consensus 236 d~~~i~-~~gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi 314 (345)
T KOG2234|consen 236 DGEAIN-EYGFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVI 314 (345)
T ss_pred cccccc-cCCccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence 222222 5789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccc
Q 015564 342 ISMHQFFSSLSKA 354 (404)
Q Consensus 342 ~gv~ly~~~~~~~ 354 (404)
.++++|+.++.+.
T Consensus 315 ~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 315 LSIFLYSLYPARD 327 (345)
T ss_pred HHHHHhhcCCccc
Confidence 9999999765544
No 2
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=100.00 E-value=6.8e-44 Score=338.55 Aligned_cols=228 Identities=33% Similarity=0.559 Sum_probs=201.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc
Q 015564 111 TFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ 190 (404)
Q Consensus 111 ~~~~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~ 190 (404)
+.++.+|+.+++++||++|++||++.|++++++||++||+++|+|+++||++++++||||++++||+|++++++|+++++
T Consensus 9 ~~~~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~ 88 (244)
T PF04142_consen 9 EVWKSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQ 88 (244)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheee
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCC--CCC------CccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 015564 191 LRSLPEGST--AMG------LPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTA 262 (404)
Q Consensus 191 ~~~~~~~~~--~~~------~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~ 262 (404)
.++....+. ... ......|++++++++++||+++||+||++|++ +.|+|.||+|+|++|++++++......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~-~~s~~~~N~qL~~~gi~~~~~~~~~~~ 167 (244)
T PF04142_consen 89 LSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRS-NVSLWIQNMQLYLFGILFNLLALLLSD 167 (244)
T ss_pred cCCccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 876433111 111 12245799999999999999999999999997 589999999999999999987754311
Q ss_pred HhcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHH
Q 015564 263 IFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIV 340 (404)
Q Consensus 263 ~~~g~~~~~~f~g~~~~~~~~i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lV 340 (404)
.+...+.++|+||++++|.+++.+++||+++++++||+|||.|+|++++++++++++|+++||.++|..+++|..+|
T Consensus 168 -~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 168 -GSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred -ccccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 11223457999999999999999999999999999999999999999999999999999999999999999998765
No 3
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.94 E-value=6.8e-26 Score=212.44 Aligned_cols=218 Identities=23% Similarity=0.314 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 015564 122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAM 201 (404)
Q Consensus 122 ~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~ 201 (404)
+++|+..|+.+|++.++++.+.++...+.. |.|++.++++++..++++++..||.++.++..|+..++.++..+.. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~--~ 78 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKT--L 78 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccc--c
Confidence 578999999999999999999999999999 9999999999999999999999999999999999988765432111 1
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccccccCChH
Q 015564 202 GLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGP---DNLDILQGHSK 278 (404)
Q Consensus 202 ~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~---~~~~~f~g~~~ 278 (404)
.......|..+.+.++++++++++|.|+..|++ +.++|.+|+++++++.+.+...... .+. ...+++++++.
T Consensus 79 ~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~-~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 153 (222)
T TIGR00803 79 MFGNPVVGLSAVLSALLSSGFAGVYFEKILKDG-DTMFWSRNLQLPLFGLFSTFSVLLW----SDGTLISNFGFFIGYPT 153 (222)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHcccCC-CCchHHHHHHHHHHHHHHHHHHHhh----cccchhhccCcccCCch
Confidence 112335688888889999999999999998875 5789999999999998876544332 221 13457889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564 279 ATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF 347 (404)
Q Consensus 279 ~~~~~i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly 347 (404)
..|..++.++++|+++++++||+|+++|+++++++++++.++|+++|||+++..+++|+.+|+.|+++|
T Consensus 154 ~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 154 AVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999887
No 4
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.93 E-value=2e-23 Score=204.81 Aligned_cols=265 Identities=18% Similarity=0.290 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Q 015564 73 PISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS 152 (404)
Q Consensus 73 ~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~ 152 (404)
+..+.+++.+.-.+++.......+++ .....| ...+.++++++.+.+.+.+.|++|+|.+++++++
T Consensus 32 ~~~lt~~q~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~k 97 (303)
T PF08449_consen 32 PLFLTFVQFAFNALFSFILLSLFKFP-KSRKIP-------------LKKYAILSFLFFLASVLSNAALKYISYPTQIVFK 97 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcccc-CCCcCh-------------HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHh
Confidence 56688888888888888776554411 111111 1268899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 015564 153 NLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGL-PVAMGAYIYTLIFITVPSMASVFNEYAL 231 (404)
Q Consensus 153 q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~~~-~~~~~G~ll~L~a~~~sala~Vy~ekll 231 (404)
++|++++++++++++|||++++||+++++.++|+++....+..+....... .....|+++.+++.+++|+.++|.||++
T Consensus 98 s~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~ 177 (303)
T PF08449_consen 98 SSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLF 177 (303)
T ss_pred hhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877654322211111 1112399999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CccccccCChHHHH---HHHHHHHHHHHHHHHHHHHhhhHHH
Q 015564 232 KSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGP--DNLDILQGHSKATM---LLIFNNAAQGILSCFFLKYADAILK 306 (404)
Q Consensus 232 k~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~--~~~~~f~g~~~~~~---~~i~~~a~ggl~vs~v~kya~~i~k 306 (404)
+++ +.+.+...++..+++.++.++..+.- ..++ +...+...++...+ ...+.+++|...+...+|..++...
T Consensus 178 ~~~-~~~~~~~mfy~n~~~~~~~~~~~~~l--~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~ 254 (303)
T PF08449_consen 178 KKY-GKSPWELMFYTNLFSLPFLLILLFLL--PTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTT 254 (303)
T ss_pred HHh-CCcHHHHHHHHHHHHHHHHHHHHHHH--HhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 987 55667777788888888776655430 0111 11223333332222 2234556777788888899999999
Q ss_pred HHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccccccc
Q 015564 307 KYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKA 354 (404)
Q Consensus 307 ~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~~ 354 (404)
+..++++.+++.++|+++||+++++.+++|+++|+.|+.+|+.+.+|+
T Consensus 255 t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 255 TIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999865554
No 5
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.92 E-value=1.5e-22 Score=199.52 Aligned_cols=230 Identities=15% Similarity=0.177 Sum_probs=182.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCC
Q 015564 117 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPE 196 (404)
Q Consensus 117 r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~ 196 (404)
+..|+|.+.|++++..|.+...|++|++.+.+|++.++.+++++++|+++||+|+++.||+++++.++|+.++...+...
T Consensus 77 ~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~ 156 (334)
T PF06027_consen 77 RPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLS 156 (334)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccc
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999987765433
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCC
Q 015564 197 GSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGH 276 (404)
Q Consensus 197 ~~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~ 276 (404)
+++..+.+....|++++++++++.|++.|+.|+..|+. +......++.++|.+++.+...+ +|..+-.. + .|
T Consensus 157 ~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~i---le~~~i~~-~-~w 228 (334)
T PF06027_consen 157 GSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLAI---LERSGIES-I-HW 228 (334)
T ss_pred cccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHh---eehhhhhc-c-CC
Confidence 22222234456799999999999999999999999874 44555677888998887765432 33322111 1 23
Q ss_pred hHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccccc
Q 015564 277 SKATMLLIF----NNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLS 352 (404)
Q Consensus 277 ~~~~~~~i~----~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~~ 352 (404)
++..+...+ .......++..++++.++..-+....++.+++.++++++||+++++.+++|.++|++|..+|+..++
T Consensus 229 ~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 229 TSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 433332221 1222334667888889888888888888999999999999999999999999999999999998544
Q ss_pred cc
Q 015564 353 KA 354 (404)
Q Consensus 353 ~~ 354 (404)
+.
T Consensus 309 ~~ 310 (334)
T PF06027_consen 309 PE 310 (334)
T ss_pred cc
Confidence 43
No 6
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.91 E-value=4.2e-22 Score=188.68 Aligned_cols=300 Identities=15% Similarity=0.214 Sum_probs=235.5
Q ss_pred CcccchhhHHHHHHHHHHHHHHHhhhhhhhh--hcc---cCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 015564 31 KTRVSSKQRVLNVFLVVGDCMLVGLQPILVY--MSK---VDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKP 105 (404)
Q Consensus 31 ~~~~~~k~~~l~~ll~~~~~~~~~~~~il~~--~s~---~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~ 105 (404)
..+...+....+++++.+....|..++++.+ +.+ +++++.=++.-.+|.+.++.++++..++..++.. ..+..|
T Consensus 4 ~~~~~~~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~-~~~~ap 82 (327)
T KOG1581|consen 4 NSGGMANKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKE-LSGVAP 82 (327)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhccccc-CCCCCc
Confidence 3333344455667777777777777777765 222 2333333556678899999999997776554432 222223
Q ss_pred cchHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 015564 106 LLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIG 185 (404)
Q Consensus 106 ~~~~~~~~~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~G 185 (404)
+ +.+...++...+...|+|.||+|++.+|..+.+++|.+.++++..++.|+|++.+.+++.++...|
T Consensus 83 l-------------~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~G 149 (327)
T KOG1581|consen 83 L-------------YKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLG 149 (327)
T ss_pred h-------------hHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhh
Confidence 2 367888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015564 186 ISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFK 265 (404)
Q Consensus 186 v~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~ 265 (404)
|.+..+.+..++....+.+...+|++++...-++.|+.+...+++.|+. +.+.+..++.+.+|+.+.+...++ .+
T Consensus 150 vsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~vNLf~~i~~~~~li----~q 224 (327)
T KOG1581|consen 150 VSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFGVNLFSAILNGTYLI----LQ 224 (327)
T ss_pred eeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHHHHHHHHHHHHHhhh----cC
Confidence 9998776543333344556677899999999999999999999999975 788888889999999999887744 23
Q ss_pred CC--CccccccCChHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHH
Q 015564 266 GP--DNLDILQGHSKATMLLI---FNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIV 340 (404)
Q Consensus 266 g~--~~~~~f~g~~~~~~~~i---~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lV 340 (404)
|. .+..|...++...|.+. ...++|+.++.+.+...++++-...++++-++++++|.++||+++++.+++|..+|
T Consensus 225 g~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iV 304 (327)
T KOG1581|consen 225 GHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIV 304 (327)
T ss_pred CCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeee
Confidence 32 12345555554444443 45678899999999999999988888899999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 015564 341 FISMHQFFS 349 (404)
Q Consensus 341 i~gv~ly~~ 349 (404)
+.|+++=..
T Consensus 305 Fg~i~l~~~ 313 (327)
T KOG1581|consen 305 FGGIFLEIL 313 (327)
T ss_pred hHHHHHHHH
Confidence 999875444
No 7
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.89 E-value=7.1e-20 Score=183.34 Aligned_cols=289 Identities=14% Similarity=0.143 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhh
Q 015564 39 RVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARN 118 (404)
Q Consensus 39 ~~l~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ 118 (404)
+...++..++.+ |+.+.++.|.+-++| .++...+++|-.+..++.+.+.+..+++.. .|..+ +|+
T Consensus 13 ~~~~~~~~~q~~--~~~~~~~~k~a~~~G---~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~---~~~~~-------~~~ 77 (358)
T PLN00411 13 VFLTAMLATETS--VVGISTLFKVATSKG---LNIYPFLGYSYLLASLLLLPSLFFTNRSRS---LPPLS-------VSI 77 (358)
T ss_pred chHHHHHHHHHH--HHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHHHHHHHHHHHHhcc---cCcch-------HHH
Confidence 345555555555 666666777666544 445567788877776555544433322111 11111 222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHH------hCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564 119 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKII------MRRRFSIIQWEALALLLIGISVNQLR 192 (404)
Q Consensus 119 ~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~------L~ekls~~qwlal~Ll~~Gv~lv~~~ 192 (404)
...+++.+++-++.+.+.|.+++|++++...++.++.|++|+++++++ +|||++++||+++++.++|+.++...
T Consensus 78 ~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 78 LSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 335666666656777899999999999999999999999999999999 69999999999999999999987643
Q ss_pred CCCCC--------------C--CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHH-HHHHH
Q 015564 193 SLPEG--------------S--TAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYG-AIFNF 255 (404)
Q Consensus 193 ~~~~~--------------~--~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g-~l~~~ 255 (404)
+.+.. . ...+......|.++.++++++++++.+..++..+++ ++....+.+...++ ..+..
T Consensus 158 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~--~~~~~~t~~~~~~~~~~~~~ 235 (358)
T PLN00411 158 HGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY--PAAFTVSFLYTVCVSIVTSM 235 (358)
T ss_pred cCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CcHhHHHHHHHHHHHHHHHH
Confidence 22100 0 000111124588999999999999999999988775 23322233322222 22222
Q ss_pred HHHHHHHHhcCCCccccccCChHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccH
Q 015564 256 LGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQ----GILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTM 331 (404)
Q Consensus 256 ~~~l~~~~~~g~~~~~~f~g~~~~~~~~i~~~a~g----gl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~ 331 (404)
+.. ..++.........++...+. +++.++. ..+-.+.+|+.++...+....+.|++++++|++++||++++
T Consensus 236 ~~l----~~~~~~~~~~~~~~~~~~~~-i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~ 310 (358)
T PLN00411 236 IGL----VVEKNNPSVWIIHFDITLIT-IVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYL 310 (358)
T ss_pred HHH----HHccCCcccceeccchHHHH-HHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcH
Confidence 222 22322111112233333222 3333332 22333466788888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 015564 332 NFLLGISIVFISMHQFFS 349 (404)
Q Consensus 332 ~~~lG~~lVi~gv~ly~~ 349 (404)
.+++|+++|+.|+++...
T Consensus 311 ~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 311 GCLIGGILITLGFYAVMW 328 (358)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999876
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.86 E-value=1.7e-18 Score=169.38 Aligned_cols=271 Identities=16% Similarity=0.203 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhH
Q 015564 42 NVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVL 121 (404)
Q Consensus 42 ~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 121 (404)
..+++...++.++.+++..|... .++|.+.++.|-++..++-..++..+++.. ..++..+.+++...
T Consensus 9 g~~~~l~a~~~wg~~~~~~k~~~-----~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~ 75 (296)
T PRK15430 9 GVLLALAAYFIWGIAPAYFKLIY-----YVPADEILTHRVIWSFFFMVVLMSICRQWS--------YLKTLIQTPQKIFM 75 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHHHHHHccHH--------HHHHHHcCHHHHHH
Confidence 44556666777999998888652 267899999999998764444433222110 00000011222223
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 015564 122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAM 201 (404)
Q Consensus 122 ~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~ 201 (404)
....++.+.+++.+.|+|++++|+++..++.++.|+++++++++++|||++++||.++++.++|+.++..++ ++
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~---~~--- 149 (296)
T PRK15430 76 LAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTF---GS--- 149 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc---CC---
Confidence 345567788999999999999999999999999999999999999999999999999999999999875331 11
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHH
Q 015564 202 GLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATM 281 (404)
Q Consensus 202 ~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~ 281 (404)
. .+++++++++++++.++.|+..++. .......+.+...++.+. .+. ....+.. .....++..|
T Consensus 150 -~------~~~~l~aa~~~a~~~i~~r~~~~~~-~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~--~~~~~~~~~~ 213 (296)
T PRK15430 150 -L------PIIALGLAFSFAFYGLVRKKIAVEA-QTGMLIETMWLLPVAAIY----LFA--IADSSTS--HMGQNPMSLN 213 (296)
T ss_pred -c------cHHHHHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHHH----HHH--HccCCcc--cccCCcHHHH
Confidence 0 1346778889999888888864321 112222233322222221 111 1111100 0111111112
Q ss_pred HHH----HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564 282 LLI----FNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF 347 (404)
Q Consensus 282 ~~i----~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly 347 (404)
..+ +..+++..+....+|+.++...+...+..++++.+++++++||+++..+++|+++|+.++-+.
T Consensus 214 ~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~ 283 (296)
T PRK15430 214 LLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF 283 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 211 133355567778889999999999999999999999999999999999999999997765433
No 9
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.86 E-value=1.6e-18 Score=173.41 Aligned_cols=256 Identities=13% Similarity=0.195 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Q 015564 73 PISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS 152 (404)
Q Consensus 73 ~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~ 152 (404)
|.+...++-++..+++.++.. .+.+ .+|... .....+ ......++++...+...+.|+++.+++.+++++
T Consensus 78 P~~l~~~~~~~~~l~~~~~~~-~~~~----~~~~~~--~~~~~~---~~llp~gl~~~~~~~~~~~sl~~~svs~~~iik 147 (350)
T PTZ00343 78 PWTISSLQLFVGWLFALLYWA-TGFR----KIPRIK--SLKLFL---KNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVK 147 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-hCCC----CCCCCC--CHHHHH---HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 677888888888766554421 1111 111111 001112 256677788887788888999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015564 153 NLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALK 232 (404)
Q Consensus 153 q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk 232 (404)
.+.|++|++++++++|||+++++|+++++.++|+.+....+. ..+..|+++++++++++++.+++.||+++
T Consensus 148 a~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~---------~~~~~G~~~~l~s~~~~a~~~i~~k~~~~ 218 (350)
T PTZ00343 148 AAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL---------HFTWLAFWCAMLSNLGSSLRSIFAKKTMK 218 (350)
T ss_pred HhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc---------hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999764221 12356999999999999999999999987
Q ss_pred hcCC--cchHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCccc-------cccCChH-HHHHHHHHHHHHHHHHH----H
Q 015564 233 SQYD--TSIYLQNLFL--YGYGAIFNFLGILVTAIFKGPDNLD-------ILQGHSK-ATMLLIFNNAAQGILSC----F 296 (404)
Q Consensus 233 ~~~~--~s~~~~n~~l--~~~g~l~~~~~~l~~~~~~g~~~~~-------~f~g~~~-~~~~~i~~~a~ggl~vs----~ 296 (404)
+... .+....+.+. ..+|.++.+|..+. .++..... .+..+.+ ..+..++..++.+.+.. +
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~---~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~ 295 (350)
T PTZ00343 219 NKSEIGENLTASNIYMLLTLIASLISLPLVLF---FEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFY 295 (350)
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6410 0122233333 45666666665432 22211000 1112211 11222333333333333 4
Q ss_pred HHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564 297 FLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (404)
Q Consensus 297 v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~ 350 (404)
.+++.+++..+.+.++.+++++++|+++|||++|..+++|.++++.|+++|+..
T Consensus 296 ~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 296 CLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 778889999999999999999999999999999999999999999999999874
No 10
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.84 E-value=3.8e-18 Score=167.08 Aligned_cols=217 Identities=12% Similarity=0.163 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 015564 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA 200 (404)
Q Consensus 121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~ 200 (404)
.....+++.++++.+.+++++|+++++++++.++.|+++++++++++|||+++++|+++++.++|+++....+
T Consensus 67 ~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~------- 139 (302)
T TIGR00817 67 LLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE------- 139 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc-------
Confidence 5666778888999999999999999999999999999999999999999999999999999999998763211
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--ccccc---C
Q 015564 201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN--LDILQ---G 275 (404)
Q Consensus 201 ~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~--~~~f~---g 275 (404)
.+....|+++++++++++++..++.||..+++ +.+.+..+.+....+.++.+|.... .++... .+..+ .
T Consensus 140 --~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~p~~~~---~~~~~~~~~~~~~~~~~ 213 (302)
T TIGR00817 140 --LSFNWAGFLSAMISNITFVSRNIFSKKAMTIK-SLDKTNLYAYISIMSLFLLSPPAFI---TEGPPFLPHGFMQAISG 213 (302)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCcccHHHHHHHHHHHHHHHHHHH---HcchHHHHHHHHHhhcc
Confidence 11234699999999999999999999988732 2233444445555666555554332 232110 00000 0
Q ss_pred Ch-HHHHHHHHHHHHHH-----HHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564 276 HS-KATMLLIFNNAAQG-----ILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (404)
Q Consensus 276 ~~-~~~~~~i~~~a~gg-----l~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~ 349 (404)
.+ ...|..++..+++. ......+|+.++...+....+.+++++++|++++||++|..+++|+++++.|+++|++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 214 VNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 11 11222222222211 1222467888999888989999999999999999999999999999999999999997
Q ss_pred c
Q 015564 350 S 350 (404)
Q Consensus 350 ~ 350 (404)
.
T Consensus 294 ~ 294 (302)
T TIGR00817 294 V 294 (302)
T ss_pred H
Confidence 4
No 11
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.84 E-value=1.2e-17 Score=163.49 Aligned_cols=272 Identities=16% Similarity=0.138 Sum_probs=179.6
Q ss_pred HHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHHHH
Q 015564 46 VVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVP 125 (404)
Q Consensus 46 ~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vp 125 (404)
....++.+++..+.+|..-++ .+|...+++|-.+-.++.+.+. .+++ .+. + ....-
T Consensus 9 ~l~~~~~Wg~~~~~~k~~~~~----~~p~~~~~~R~~~a~~~l~~~~--~~~~-----~~~---~----------~~~~~ 64 (299)
T PRK11453 9 ALLVVVVWGLNFVVIKVGLHN----MPPLMLAGLRFMLVAFPAIFFV--ARPK-----VPL---N----------LLLGY 64 (299)
T ss_pred HHHHHHHHhhhHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHh--cCCC-----Cch---H----------HHHHH
Confidence 444567788888888865443 6788888888877543322221 1110 110 0 01111
Q ss_pred HH-HHHHHHHHHHHHHhc-cChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 015564 126 AF-LYAINNYLKFIMQLY-FNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGL 203 (404)
Q Consensus 126 A~-ly~~~n~L~f~al~~-l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~~~ 203 (404)
++ .+..+..+.|.++++ ++++...++.++.|+++++++++++|||++++||+++++.++|+.++..++.. +.
T Consensus 65 g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~------~~ 138 (299)
T PRK11453 65 GLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLN------GQ 138 (299)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCC------Cc
Confidence 22 234566677889987 78899999999999999999999999999999999999999999987643211 11
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccccCChHHHHH
Q 015564 204 PVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN-LDILQGHSKATML 282 (404)
Q Consensus 204 ~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~-~~~f~g~~~~~~~ 282 (404)
+....|+++.++++++++.+.++.||..++..+......+......+. .+........+++.. ...+..+++..|.
T Consensus 139 ~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (299)
T PRK11453 139 HVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPI---IPFFVASLILDGSATMIHSLVTIDMTTIL 215 (299)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHH---HHHHHHHHHhcCchhhhhhhccCCHHHHH
Confidence 122359999999999999999999997664311111111111111111 122111112233211 0112334555666
Q ss_pred HHHHHHHHHHHHHHH-----HHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564 283 LIFNNAAQGILSCFF-----LKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (404)
Q Consensus 283 ~i~~~a~ggl~vs~v-----~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~ 350 (404)
.+++.++.+..+++. +++.++...+...++.|+++.+++++++||+++..+++|+++|+.|+++-..+
T Consensus 216 ~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 216 SLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 666666555544443 45667777778888999999999999999999999999999999999876654
No 12
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.83 E-value=2.1e-18 Score=161.67 Aligned_cols=286 Identities=14% Similarity=0.165 Sum_probs=194.9
Q ss_pred hhhhhcc---cCC----cccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-CCcchHHHHHHH--hhhhhHHHHHHH
Q 015564 58 ILVYMSK---VDG----RFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGE-KPLLSISTFIQA--ARNNVLLAVPAF 127 (404)
Q Consensus 58 il~~~s~---~~~----~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~-~~~~~~~~~~~~--~r~~~~~~vpA~ 127 (404)
++.|++. .+| .-++-.+...|+.|+..+.+-..+-.+..++....+ ....+ |. +-+...+..||+
T Consensus 20 l~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ils-----q~~~pf~p~lfl~Pal 94 (372)
T KOG3912|consen 20 LVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILS-----QDSSPFNPVLFLPPAL 94 (372)
T ss_pred HHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccc-----cccCCCCcceecChHH
Confidence 4667654 222 124555677899999887665444333322211110 00010 11 112235667999
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCC-CCCCccc
Q 015564 128 LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGST-AMGLPVA 206 (404)
Q Consensus 128 ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~-~~~~~~~ 206 (404)
+......+.|+++.+.+++.||+++...++||++|+..+|||+++.+||+++....+|++++...+....+. .......
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~i 174 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSI 174 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999987653211111 1112223
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHH-HHHHHHHHHHHHHhcCCC----ccccccCChHHHH
Q 015564 207 MGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYG-AIFNFLGILVTAIFKGPD----NLDILQGHSKATM 281 (404)
Q Consensus 207 ~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g-~l~~~~~~l~~~~~~g~~----~~~~f~g~~~~~~ 281 (404)
..|+++.+.+.+.-|...|+.||.+|++ +.++..-.-+-.+|| .++++.++.+..+..+.. +.+.++.|.. +|
T Consensus 175 itGdllIiiaqiivaiQ~v~Eek~l~~~-nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~-~~ 252 (372)
T KOG3912|consen 175 ITGDLLIIIAQIIVAIQMVCEEKQLKKS-NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGD-AF 252 (372)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhc-cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHH-HH
Confidence 4699999999999999999999999987 455544444557778 344444443332222311 1222332221 11
Q ss_pred H-----HHHHHHHHHHHHH---------HHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564 282 L-----LIFNNAAQGILSC---------FFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF 347 (404)
Q Consensus 282 ~-----~i~~~a~ggl~vs---------~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly 347 (404)
. ..+..+.+|.+++ .+.|+.++..+-...++...+.++++..++.|.+...++.|.++.+.|+++|
T Consensus 253 ~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY 332 (372)
T KOG3912|consen 253 AALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILY 332 (372)
T ss_pred HHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0112223333322 5668888888889999999999999999999999999999999999999999
Q ss_pred ccc
Q 015564 348 FSS 350 (404)
Q Consensus 348 ~~~ 350 (404)
+.-
T Consensus 333 ~~i 335 (372)
T KOG3912|consen 333 NQI 335 (372)
T ss_pred HHH
Confidence 863
No 13
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.82 E-value=4.9e-17 Score=158.66 Aligned_cols=275 Identities=12% Similarity=0.125 Sum_probs=189.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHh
Q 015564 37 KQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAA 116 (404)
Q Consensus 37 k~~~l~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 116 (404)
+|..-.++.+....+.+++..+.+|...++ .+|.+.+++|-++..++-+.++..++++ .+ +.+.+
T Consensus 4 ~~~~~~~~~~~~~~~iWg~~~~~~K~~~~~----~~p~~~~~~R~~~a~l~ll~~~~~~~~~-----~~--~~~~~---- 68 (292)
T PRK11272 4 RQLLPLFGALFALYIIWGSTYLVIRIGVES----WPPLMMAGVRFLIAGILLLAFLLLRGHP-----LP--TLRQW---- 68 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHhCCC-----CC--cHHHH----
Confidence 455555666777778899999899876553 6688899999998876655554433221 11 11111
Q ss_pred hhhhHHHHHHHH-HHHHHHHHHHHH-hccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCC
Q 015564 117 RNNVLLAVPAFL-YAINNYLKFIMQ-LYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSL 194 (404)
Q Consensus 117 r~~~~~~vpA~l-y~~~n~L~f~al-~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~ 194 (404)
....+.+.+ ...++.+.|.+. ++.+++...++..+.|+++++++.+ +|||++++||.++++.++|+.++..++.
T Consensus 69 ---~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~ 144 (292)
T PRK11272 69 ---LNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN 144 (292)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc
Confidence 123344443 456788889998 9999999999999999999999985 7999999999999999999988754321
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 015564 195 PEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQ 274 (404)
Q Consensus 195 ~~~~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~ 274 (404)
. +....|+++++++++++++.+++.||..++ .+......++ ..+.+...+... ..+.. ...
T Consensus 145 ~--------~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~----~~~~~---~~~ 205 (292)
T PRK11272 145 L--------SGNPWGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEM-LAAGVVLLIASL----LSGER---LTA 205 (292)
T ss_pred c--------ccchHHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHH-HHHHHHHHHHHH----HcCCc---ccc
Confidence 1 112358999999999999999999886543 2333333333 233332222211 12211 011
Q ss_pred CChHHHHHHHHHHHHHH-----HHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564 275 GHSKATMLLIFNNAAQG-----ILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (404)
Q Consensus 275 g~~~~~~~~i~~~a~gg-----l~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~ 349 (404)
..+...|..+++.++.+ .+....+|+.++...+...+..++++.+++++++||++|..+++|+++|+.|+++.+.
T Consensus 206 ~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 206 LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 12334455544444443 3444556778887788888899999999999999999999999999999999987655
No 14
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.79 E-value=2.3e-16 Score=150.39 Aligned_cols=205 Identities=14% Similarity=0.117 Sum_probs=152.1
Q ss_pred HHHHH-HHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 015564 122 LAVPA-FLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA 200 (404)
Q Consensus 122 ~~vpA-~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~ 200 (404)
+.+.+ +...+++.+.|.|++|+++++..++.++.|+++++++.+++|||++++||.++++.++|+.++..++. .
T Consensus 49 ~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~--~--- 123 (260)
T TIGR00950 49 LLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN--L--- 123 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc--c---
Confidence 34444 55679999999999999999999999999999999999999999999999999999999998764321 1
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHH
Q 015564 201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKAT 280 (404)
Q Consensus 201 ~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~ 280 (404)
.....|+++.++++++++...++.++..++. +.+....+.+.+..+.++..+... ..++.. ..+...
T Consensus 124 ---~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~-----~~~~~~ 190 (260)
T TIGR00950 124 ---SINPAGLLLGLGSGISFALGTVLYKRLVKKE-GPELLQFTGWVLLLGALLLLPFAW----FLGPNP-----QALSLQ 190 (260)
T ss_pred ---cccHHHHHHHHHHHHHHHHHHHHHhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHH----hcCCCC-----CcchHH
Confidence 1224589999999999999999999987654 222222222233444444333322 222211 112223
Q ss_pred HHHHH-----HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Q 015564 281 MLLIF-----NNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISM 344 (404)
Q Consensus 281 ~~~i~-----~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv 344 (404)
|..++ ...++..+....+|+.++...+...++.++++.+++++++||+++..+++|..+++.|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 191 WGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 32222 23344455666778888888889999999999999999999999999999999999885
No 15
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.76 E-value=7.7e-16 Score=150.48 Aligned_cols=270 Identities=11% Similarity=0.059 Sum_probs=175.7
Q ss_pred HHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHHH
Q 015564 45 LVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAV 124 (404)
Q Consensus 45 l~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v 124 (404)
+....++.++..-+..|..-++ ++|....++|-.+..++-..+ . +++.. +. . .++ ....
T Consensus 8 ~~l~a~~~Wg~~~~~~k~~~~~----~~P~~~~~~R~~~a~l~l~~~--~-~~~~~---~~-~-------~~~---~~~~ 66 (295)
T PRK11689 8 IGLIAILLWSTMVGLIRGVSES----LGPVGGAAMIYSVSGLLLLLT--V-GFPRL---RQ-F-------PKR---YLLA 66 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc----CChHHHHHHHHHHHHHHHHHH--c-ccccc---cc-c-------cHH---HHHH
Confidence 3444556688877777765443 678888888866654443322 1 11100 00 0 011 1122
Q ss_pred HHHHHHHHHHHHHHHHh----ccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCC-CC
Q 015564 125 PAFLYAINNYLKFIMQL----YFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEG-ST 199 (404)
Q Consensus 125 pA~ly~~~n~L~f~al~----~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~-~~ 199 (404)
-++.+++++.+.|.+++ ++++.+..++.++.|+++++++++++|||++++||.++++.++|+.++..++.+.+ .+
T Consensus 67 ~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~ 146 (295)
T PRK11689 67 GGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAE 146 (295)
T ss_pred HhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhh
Confidence 24456677777787775 46888899999999999999999999999999999999999999988865432100 00
Q ss_pred -CCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChH
Q 015564 200 -AMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSK 278 (404)
Q Consensus 200 -~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~ 278 (404)
..+......|++++++++++++++.++.||..++. + +. . ......+..+ .+.. ..++.. ...+++
T Consensus 147 ~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~-~~-~--~~~~~~~~~l-~~~~----~~~~~~----~~~~~~ 212 (295)
T PRK11689 147 LINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-N-GI-T--LFFILTALAL-WIKY----FLSPQP----AMVFSL 212 (295)
T ss_pred hhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-C-ch-h--HHHHHHHHHH-HHHH----HHhcCc----cccCCH
Confidence 00111123589999999999999999999986553 2 22 1 1111122221 1111 122211 122333
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564 279 ATMLLIFNNAA----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (404)
Q Consensus 279 ~~~~~i~~~a~----ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~ 349 (404)
..|..+++.++ +..+-...+|+.++...+...++.|+++.+++++++||+++..+++|+++|+.|+++...
T Consensus 213 ~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 213 PAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 34444333332 233445677888888889999999999999999999999999999999999999876654
No 16
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.76 E-value=2.4e-15 Score=146.84 Aligned_cols=267 Identities=12% Similarity=-0.008 Sum_probs=176.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhh
Q 015564 38 QRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAAR 117 (404)
Q Consensus 38 ~~~l~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r 117 (404)
+++.. ++...++.++....+.|+.-++ +++...++.|-++-.++-+.+..+.+.+ .+.+
T Consensus 11 ~~~~~--~~~la~~~~~~~~~~~K~~~~~----~~~~~~~~~R~~~a~l~l~~~~~~~~~~--------~~~~------- 69 (293)
T PRK10532 11 WLPIL--LLLIAMASIQSGASLAKSLFPL----VGAPGVTALRLALGTLILIAIFKPWRLR--------FAKE------- 69 (293)
T ss_pred chHHH--HHHHHHHHHHhhHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHHHHhHHhcc--------CCHH-------
Confidence 44543 4444455577777788765442 6788888999888866554433221110 0111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCC
Q 015564 118 NNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEG 197 (404)
Q Consensus 118 ~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~ 197 (404)
+.......++++.+.+.+.|++++|+|++...++..+.|+++++++. ||.+..+| +.+.++|+.++..++.+.+
T Consensus 70 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~~~~--~~i~~~Gv~li~~~~~~~~ 143 (293)
T PRK10532 70 QRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVDFVW--VVLAVLGLWFLLPLGQDVS 143 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHHHHH--HHHHHHHHheeeecCCCcc
Confidence 11123445566788889999999999999999999999999998873 55555555 5567899887653322111
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCh
Q 015564 198 STAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHS 277 (404)
Q Consensus 198 ~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~ 277 (404)
+ ....|+++++++++++++..++.||..+++ +......+ .+++.++..+... .++.. ..++
T Consensus 144 ----~--~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~---~~~~~~~~-~~~~~~~l~~~~~----~~~~~-----~~~~ 204 (293)
T PRK10532 144 ----H--VDLTGAALALGAGACWAIYILSGQRAGAEH---GPATVAIG-SLIAALIFVPIGA----LQAGE-----ALWH 204 (293)
T ss_pred ----c--CChHHHHHHHHHHHHHHHHHHHHHHHhccC---CchHHHHH-HHHHHHHHHHHHH----HccCc-----ccCC
Confidence 1 123599999999999999999999987653 22223333 3344433333222 22211 1123
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564 278 KATMLL-----IFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (404)
Q Consensus 278 ~~~~~~-----i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~ 350 (404)
+..|.. ++...++..+....+++.++...+...++.++++.+++++++||+++..+++|+++|+.|+..+...
T Consensus 205 ~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 205 WSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 333322 2233333345567778889888899999999999999999999999999999999999998887654
No 17
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.75 E-value=2.5e-17 Score=151.04 Aligned_cols=282 Identities=13% Similarity=0.143 Sum_probs=202.6
Q ss_pred HHHHHHHHHHhhhhhhhh-hcc---c-CC----cccchHHHHHHHHHHHHHHHHHHHH-HHHhhcccCCCCCcchHHHHH
Q 015564 44 FLVVGDCMLVGLQPILVY-MSK---V-DG----RFKFSPISVNFLTEMTKVLFAIVML-FFQARHQKVGEKPLLSISTFI 113 (404)
Q Consensus 44 ll~~~~~~~~~~~~il~~-~s~---~-~~----~~~~~~~~~V~l~E~~Kl~is~~~l-~~~~~~~~~~~~~~~~~~~~~ 113 (404)
+|..+..++|-..+|..+ ..+ . +| ++.|. -+.||++....-+++=+++ ++.+.+. ++.
T Consensus 16 ica~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfa-laLVf~qC~~N~vfAkvl~~ir~~~~~---D~t-------- 83 (337)
T KOG1580|consen 16 ICAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFA-LALVFFQCTANTVFAKVLFLIRKKTEI---DNT-------- 83 (337)
T ss_pred EEecchhheehhhhhHHHHhhccccCCCCcchheehHH-HHHHHHHHHHHHHHHHhheeecccccc---cCC--------
Confidence 344455555666665544 222 1 11 22333 3678889888888875443 3322211 110
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCC
Q 015564 114 QAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS 193 (404)
Q Consensus 114 ~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~ 193 (404)
..+.|+-.++.|.+...-...|++++|.+|..+-+++||+.++++.+++.+++++++++.++++..+||++..+.+
T Consensus 84 ----~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~ 159 (337)
T KOG1580|consen 84 ----PTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKE 159 (337)
T ss_pred ----cchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccc
Confidence 1236778888999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--cc
Q 015564 194 LPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN--LD 271 (404)
Q Consensus 194 ~~~~~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~--~~ 271 (404)
..-++.+ ......|-++.+++-.+.|+.++..|++.+.+. ++-...+..+.+|+.+....+++ +.|+.+ .-
T Consensus 160 ~Kv~g~e--~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq-~~g~~MM~~~NlwStL~Lg~g~l----fTGElweF~y 232 (337)
T KOG1580|consen 160 NKVGGAE--DKTFGFGELLLILSLAMDGLTGSIQDRIRASYQ-RTGTSMMFYTNLWSTLYLGAGLL----FTGELWEFFY 232 (337)
T ss_pred cccCCCc--ccccchHHHHHHHHHHhcccchhHHHHHHHhhc-cCchhhHHHHHHHHHHHhhhhhe----ehhhHHHHHH
Confidence 3211110 011234778889999999999999999987663 23333455667888887666554 445421 12
Q ss_pred cccCChHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015564 272 ILQGHSKATMLL---IFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF 348 (404)
Q Consensus 272 ~f~g~~~~~~~~---i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~ 348 (404)
|-+.++...|-+ -+...+|+.++...+-+.++...+..++....|+++.|+++|+++++..+|+|..+|+.+...=.
T Consensus 233 F~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 233 FVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 334455444433 23456788888888889999999999999999999999999999999999999999999876433
No 18
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.73 E-value=1.6e-15 Score=147.19 Aligned_cols=211 Identities=12% Similarity=0.101 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 015564 123 AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMG 202 (404)
Q Consensus 123 ~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~~ 202 (404)
..-+.....++.+.+.++++.|++....+.++.|+++++++++++|||++++||.++++.++|+.++..++.. .
T Consensus 67 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~-~----- 140 (281)
T TIGR03340 67 AISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA-Q----- 140 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc-c-----
Confidence 3445667889999999999999999999999999999999999999999999999999999999987654321 1
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccccccCChHH--
Q 015564 203 LPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFN-FLGILVTAIFKGPDNLDILQGHSKA-- 279 (404)
Q Consensus 203 ~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~-~~~~l~~~~~~g~~~~~~f~g~~~~-- 279 (404)
....|+.++++++++++++.++.|+..++.+ +. ....+...++.++. .+..... ...+.... .......+
T Consensus 141 --~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~ 213 (281)
T TIGR03340 141 --HRRKAYAWALAAALGTAIYSLSDKAAALGVP--AF-YSALGYLGIGFLAMGWPFLLLY-LKRHGRSM-FPYARQILPS 213 (281)
T ss_pred --cchhHHHHHHHHHHHHHHhhhhccccccchh--cc-cccHHHHHHHHHHHHHHHHHHH-HHHhccch-hhhHHHHHHH
Confidence 1123667788888999998887776543321 11 11111112222221 2221111 11111100 00111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Q 015564 280 TMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQ 346 (404)
Q Consensus 280 ~~~~i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~l 346 (404)
.+...+..+++..+....+++.++...+...+++++++.+++++++||+++..+++|+++|+.|+++
T Consensus 214 ~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 214 ATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 1111222233344445566777766666667789999999999999999999999999999999875
No 19
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.69 E-value=1.8e-13 Score=131.28 Aligned_cols=210 Identities=19% Similarity=0.228 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 015564 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLK-IIMRRRFSIIQWEALALLLIGISVNQLRSLPEGST 199 (404)
Q Consensus 121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~-l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~ 199 (404)
......+.....+.+.|.++++++++...++.++.|++++++++ +++|||+++++|.++++.++|+.++..++..+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~- 150 (292)
T COG0697 72 LLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI- 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh-
Confidence 34555677889999999999999999999999999999999997 7779999999999999999999999766532111
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCccccccCChH
Q 015564 200 AMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQN-LFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSK 278 (404)
Q Consensus 200 ~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n-~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~ 278 (404)
+ ...|.+++++++++.+++.++.|++. +. .+....- .++ .+... .......... + ...+.
T Consensus 151 ----~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~--~~~~~~~~~~~--~~~~~----~~~~~~~~~~---~--~~~~~ 211 (292)
T COG0697 151 ----L-SLLGLLLALAAALLWALYTALVKRLS-RL--GPVTLALLLQL--LLALL----LLLLFFLSGF---G--APILS 211 (292)
T ss_pred ----H-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC--ChHHHHHHHHH--HHHHH----HHHHHHhccc---c--ccCCH
Confidence 0 34689999999999999999999987 32 2221111 111 11111 1110011111 0 11122
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564 279 ATMLLIFN-----NAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (404)
Q Consensus 279 ~~~~~i~~-----~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~ 350 (404)
..|..+.. .+++..+....++..++...+......++++.+++++++||+++..+++|.++++.|+.+.+..
T Consensus 212 ~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 212 RAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 22333222 2234445556667777777777778899999999999999999999999999999999888764
No 20
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.63 E-value=2.7e-13 Score=129.61 Aligned_cols=248 Identities=11% Similarity=0.034 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHH-Hhh-hhh
Q 015564 43 VFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQ-AAR-NNV 120 (404)
Q Consensus 43 ~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~-~~r-~~~ 120 (404)
.+++...++.++..+++.|... + .+|.+.++.|.++..++-..++...+++.. . .+++.. ..+ ...
T Consensus 4 ~~~~i~a~~~wg~~~~~~k~~~-~----~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~ 71 (256)
T TIGR00688 4 IIVSLLASFLFGYMYYYSKLLK-P----LPATDILGHRMIWSFPFMLLSVTLFRQWAA--L-----IERLKRIQKRPLIL 71 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-c----CCHHHHHHHHHHHHHHHHHHHHHHHcchHH--H-----HHHHhCcccchHHH
Confidence 3456666777999999998632 2 679999999999876543333222221100 0 000000 001 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 015564 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA 200 (404)
Q Consensus 121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~ 200 (404)
...+.+++..+++.+.|+|++++++++..++.++.|+++++++++++|||++++||+++++.++|++++..++ ++
T Consensus 72 ~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~---~~-- 146 (256)
T TIGR00688 72 SLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK---GS-- 146 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc---CC--
Confidence 4566777888999999999999999999999999999999999999999999999999999999999875331 11
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHH
Q 015564 201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKAT 280 (404)
Q Consensus 201 ~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~ 280 (404)
. . +++++++++.++..++.|+..+++ .. +.....+...++..+..+ ..+............+.
T Consensus 147 ----~---~-~~~l~aa~~~a~~~i~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 209 (256)
T TIGR00688 147 ----L---P-WEALVLAFSFTAYGLIRKALKNTD---LA--GFCLETLSLMPVAIYYLL----QTDFATVQQTNPFPIWL 209 (256)
T ss_pred ----c---h-HHHHHHHHHHHHHHHHHhhcCCCC---cc--hHHHHHHHHHHHHHHHHH----HhccCcccccCchhHHH
Confidence 0 1 345778888999888888864421 11 111101111122111111 11110000001111122
Q ss_pred HHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHH
Q 015564 281 MLL--IFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVL 324 (404)
Q Consensus 281 ~~~--i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~ll 324 (404)
++. .+..+++..+....+|+.++...+...++.|+++.++++++
T Consensus 210 ~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 210 LLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 221 12234555677788899999999999999999999999764
No 21
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.3e-14 Score=136.05 Aligned_cols=231 Identities=15% Similarity=0.188 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 015564 121 LLAVPAFLYAINNYLKFIMQLY-FNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGST 199 (404)
Q Consensus 121 ~~~vpA~ly~~~n~L~f~al~~-l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~ 199 (404)
.|++.-.++.+.|.+..+|+.+ ++.+...++++..++.+++++++++|||+|.+|+.+++++++|+++..+.+..+...
T Consensus 66 ~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 66 DYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred hhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 4677777888889999999987 888999999999999999999999999999999999999999999876654332211
Q ss_pred --------CCCCcc--chHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHH--H-----
Q 015564 200 --------AMGLPV--AMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVT--A----- 262 (404)
Q Consensus 200 --------~~~~~~--~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~--~----- 262 (404)
+...+. -.+|+.+..++.+.||..|+|+|..+|++. .-|..+++ +.-.+++|+.+.. .
T Consensus 146 ~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG--Kh~~EalF---ytH~LsLP~Flf~~~div~~~ 220 (330)
T KOG1583|consen 146 KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYG--KHWKEALF---YTHFLSLPLFLFMGDDIVSHW 220 (330)
T ss_pred hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHHH---HHHHhccchHHHhcchHHHHH
Confidence 001111 245888888899999999999999999973 34445544 4556666665421 0
Q ss_pred --HhcCCCc-cccccCChHHHHHHHHHHHHHH-HHHHHHHHH---hhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHH
Q 015564 263 --IFKGPDN-LDILQGHSKATMLLIFNNAAQG-ILSCFFLKY---ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLL 335 (404)
Q Consensus 263 --~~~g~~~-~~~f~g~~~~~~~~i~~~a~gg-l~vs~v~ky---a~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~l 335 (404)
.+.++.- .+.+...-+..|..++.+.+.+ .++..++-. .++.+.+...+++..++.++|++.|.+++|++.++
T Consensus 221 ~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~l 300 (330)
T KOG1583|consen 221 RLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWL 300 (330)
T ss_pred HHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHH
Confidence 1112110 0011111133444444443333 333333321 23333344455777899999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccc
Q 015564 336 GISIVFISMHQFFSSLSKAKD 356 (404)
Q Consensus 336 G~~lVi~gv~ly~~~~~~~~~ 356 (404)
|+.+|+.|..+|....+++|.
T Consensus 301 Ga~lVF~Gt~~fa~~~~~~~~ 321 (330)
T KOG1583|consen 301 GAALVFFGTLLFANVWNHPKA 321 (330)
T ss_pred HHHHHHHHHHHHHHHHcCccc
Confidence 999999999999887666663
No 22
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.50 E-value=1.1e-14 Score=136.10 Aligned_cols=209 Identities=11% Similarity=0.108 Sum_probs=141.8
Q ss_pred HHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCC-----CCCCCcc
Q 015564 131 INNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGS-----TAMGLPV 205 (404)
Q Consensus 131 ~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~-----~~~~~~~ 205 (404)
..-.+.|||++||+.+.+.++..+.|.+|++|++.+|||++|+..-++..+.+.||+++..|++--++ +..+...
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~ 188 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEY 188 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccc
Confidence 33478899999999999999999999999999999999999999999999999999999877642111 1111111
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHH
Q 015564 206 AMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIF 285 (404)
Q Consensus 206 ~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i~ 285 (404)
...|.+..+.+++..+-..+..|++.|+- +-. +...+....+.+.++++.....-++-|. -|-+++....+.
T Consensus 189 ~~~gt~aai~s~lf~asvyIilR~iGk~~-h~~--msvsyf~~i~lV~s~I~~~~ig~~~lP~-----cgkdr~l~~~lG 260 (346)
T KOG4510|consen 189 DIPGTVAAISSVLFGASVYIILRYIGKNA-HAI--MSVSYFSLITLVVSLIGCASIGAVQLPH-----CGKDRWLFVNLG 260 (346)
T ss_pred cCCchHHHHHhHhhhhhHHHHHHHhhccc-cEE--EEehHHHHHHHHHHHHHHhhccceecCc-----cccceEEEEEeh
Confidence 23466666777776666667779988864 211 1122334445555544432111111110 111222111121
Q ss_pred -HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564 286 -NNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF 347 (404)
Q Consensus 286 -~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly 347 (404)
..-+|+++++..++.-.+--.+.++++.++++.+..+++|||.||++.++|+++|+.++...
T Consensus 261 vfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~ 323 (346)
T KOG4510|consen 261 VFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV 323 (346)
T ss_pred hhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence 23346677777776544445568888999999999999999999999999999999986543
No 23
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.45 E-value=3.8e-12 Score=119.38 Aligned_cols=220 Identities=15% Similarity=0.114 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 015564 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA 200 (404)
Q Consensus 121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~ 200 (404)
.|.+.|.+-.....|..-++.|++.++..+.+++|.+.+.+.+.++=|+|+....+.|..++.+|.++..+.+....+
T Consensus 108 tY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sP-- 185 (367)
T KOG1582|consen 108 TYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSP-- 185 (367)
T ss_pred HhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCC--
Confidence 577888888888899999999999999999999999999999999999999999999999999999999876543221
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--ccccccCChH
Q 015564 201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPD--NLDILQGHSK 278 (404)
Q Consensus 201 ~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~--~~~~f~g~~~ 278 (404)
..+..|+.+.-++-++.|+-|-.+||.+|..+..+ .++-+++..+.++.++......|+- .+.++..+++
T Consensus 186 ---NF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss-----~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~ 257 (367)
T KOG1582|consen 186 ---NFNLIGVMMISGALLADAVIGNVQEKAMKMNPASS-----SEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPV 257 (367)
T ss_pred ---CcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCc-----ceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcH
Confidence 13446888877788889998989999999864333 2222333333333333222345542 2334444555
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564 279 ATMLLIFNNAA----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (404)
Q Consensus 279 ~~~~~i~~~a~----ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~ 350 (404)
.++...+.-+. |...+-..+|..++.+....++....+++++|+++|..|+|....-|..+|+.|+++-..+
T Consensus 258 ~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ys 333 (367)
T KOG1582|consen 258 RTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYS 333 (367)
T ss_pred hHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhccc
Confidence 45443333222 3334444567788888888888999999999999999999999999999999999975553
No 24
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.42 E-value=5.5e-10 Score=106.50 Aligned_cols=273 Identities=16% Similarity=0.250 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhH
Q 015564 42 NVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVL 121 (404)
Q Consensus 42 ~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 121 (404)
.+++.....+.+|..|...|+-+. .++.++.--|-+-.+.+.+.++...++.. ..+...+.+|....
T Consensus 8 Gil~~l~Ay~lwG~lp~y~kll~~-----~~~~eIlahRviwS~~~~l~ll~~~r~~~--------~~~~~~~~p~~~~~ 74 (293)
T COG2962 8 GILLALLAYLLWGLLPLYFKLLEP-----LPATEILAHRVIWSFPFMLALLFLLRQWR--------ELKQLLKQPKTLLM 74 (293)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHhCcHHHHH
Confidence 344555566778888877776543 34556655566666655555544333211 11233445555566
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 015564 122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAM 201 (404)
Q Consensus 122 ~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~ 201 (404)
+.+-+++-..|-.++-+|..+=..-..++-+...|++..++..++||||+++.||+|+++..+||..-.....
T Consensus 75 ~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g------- 147 (293)
T COG2962 75 LALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG------- 147 (293)
T ss_pred HHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC-------
Confidence 7777788888888888899998889999999999999999999999999999999999999999988644321
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc-CChHHH
Q 015564 202 GLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQ-GHSKAT 280 (404)
Q Consensus 202 ~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~-g~~~~~ 280 (404)
+.|. .. +.-++..++++. .||.+|-+.-.+.....+.+...+ +..++ ..++... +.. +.+...
T Consensus 148 ~lpw--va----l~la~sf~~Ygl-~RK~~~v~a~~g~~lE~l~l~p~a----l~yl~---~l~~~~~--~~~~~~~~~~ 211 (293)
T COG2962 148 SLPW--VA----LALALSFGLYGL-LRKKLKVDALTGLTLETLLLLPVA----LIYLL---FLADSGQ--FLQQNANSLW 211 (293)
T ss_pred CCcH--HH----HHHHHHHHHHHH-HHHhcCCchHHhHHHHHHHHhHHH----HHHHH---HHhcCch--hhhcCCchHH
Confidence 1222 22 222344566653 567666532233333333332222 11111 1122111 222 222222
Q ss_pred HHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564 281 MLLIFNNAAQGI---LSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (404)
Q Consensus 281 ~~~i~~~a~ggl---~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~ 350 (404)
++++....+..+ +.+..-|..+=.+-++.++.++..-.+++++++||+++..++++.+.+-.|..+|...
T Consensus 212 ~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 212 LLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 233322222222 2223335566667789999999999999999999999999999999999999888764
No 25
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.41 E-value=4.7e-13 Score=130.90 Aligned_cols=221 Identities=15% Similarity=0.252 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 015564 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA 200 (404)
Q Consensus 121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~ 200 (404)
.....++.+++...+...++++.+.+.+|+++.+.|++|.++++++.+|++++.-|++++....||.+....+.
T Consensus 85 ~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~------ 158 (316)
T KOG1441|consen 85 TLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL------ 158 (316)
T ss_pred HHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc------
Confidence 46677899999999999999999999999999999999999999999999999999999999999998765321
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCccc-cccCCh
Q 015564 201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVT--AIFKGPDNLD-ILQGHS 277 (404)
Q Consensus 201 ~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~--~~~~g~~~~~-~f~g~~ 277 (404)
..+..|....+.+.+..++..++.+++++++ +.+..-.| +.-+-.++++..++.. ...+++...+ ....|+
T Consensus 159 ---~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~-~~~~~~~~--ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~ 232 (316)
T KOG1441|consen 159 ---SFNLFGFISAMISNLAFALRNILSKKLLTSK-GESLNSMN--LLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWF 232 (316)
T ss_pred ---cccHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccccCchH--HHHHhhhHHHHHHhcchHhhhcccceeeeeccccc
Confidence 2456799999999999999999999999743 22332223 3223333333322211 0123321100 112343
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccccc
Q 015564 278 KATMLLIFNNA---AQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSK 353 (404)
Q Consensus 278 ~~~~~~i~~~a---~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~ 353 (404)
...+..+++.. ..++....++...++++-..+..+.-++.++.|+++|++++|+...+|+++-+.|+++|++...+
T Consensus 233 ~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~ 311 (316)
T KOG1441|consen 233 VTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLK 311 (316)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence 33333333321 12345556677777887777777777888899999999999999999999999999999995433
No 26
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.33 E-value=8.7e-11 Score=114.90 Aligned_cols=224 Identities=13% Similarity=0.179 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 015564 122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAM 201 (404)
Q Consensus 122 ~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~ 201 (404)
...-+.+.++.|.....||.+.+.+..++++++.=+||-.++.++.+||++..+.+++++.+.||+++...+..++++..
T Consensus 162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~ 241 (416)
T KOG2765|consen 162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLP 241 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCC
Confidence 44556788899999999999999999999999999999999999999999999999999999999999877643332211
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcchHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCccccccCCh
Q 015564 202 GLPVAMGAYIYTLIFITVPSMASVFNEYALKSQ-YDTSIYLQNLFLYGYG---AIFNFLGILVTAIFKGPDNLDILQGHS 277 (404)
Q Consensus 202 ~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~-~~~s~~~~n~~l~~~g---~l~~~~~~l~~~~~~g~~~~~~f~g~~ 277 (404)
. .....|.++.+++++..|.+.+..++-..++ .+.++ ++++.+.| .++.-|.+++-..+ +.+ -|+-++
T Consensus 242 a-~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi---~lffGfvGLfnllllwP~l~iL~~~-~~e---~F~lP~ 313 (416)
T KOG2765|consen 242 A-SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDI---QLFFGFVGLFNLLLLWPPLIILDFF-GEE---RFELPS 313 (416)
T ss_pred c-cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccH---HHHHHHHHHHHHHHHhHHHHHHHHh-ccC---cccCCC
Confidence 1 1235799999999998888877776655444 23333 23334444 33333333222223 321 233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccccc
Q 015564 278 KATMLLIFNNAAQGILSCFFLK-----YADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLS 352 (404)
Q Consensus 278 ~~~~~~i~~~a~ggl~vs~v~k-----ya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~~ 352 (404)
......++..++-|.+++=.+| ..++.+.+.+-++++.++.+...++=|.++|+.+++|...|+.|-++.+.+.+
T Consensus 314 ~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 314 STQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred CceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 3333334444455656663333 24566666777788899999999999999999999999999999888776543
Q ss_pred c
Q 015564 353 K 353 (404)
Q Consensus 353 ~ 353 (404)
.
T Consensus 394 ~ 394 (416)
T KOG2765|consen 394 N 394 (416)
T ss_pred c
Confidence 3
No 27
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.32 E-value=3.3e-10 Score=108.25 Aligned_cols=263 Identities=17% Similarity=0.199 Sum_probs=174.3
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccCh
Q 015564 66 DGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNP 145 (404)
Q Consensus 66 ~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~ 145 (404)
++.++|+ .-++-+..++|+.++.......+.+.. ..+...+ |....| +++..|+.-++.-.+..++++|++.
T Consensus 39 ~~~f~fP-Lf~ts~h~~v~flfa~~~~~l~~~~~~-r~r~~~s---w~~~Lr---~~aPtalata~DIGLSN~sl~yVtl 110 (349)
T KOG1443|consen 39 TKNFHFP-LFVTSLHLAVKFLFAALSRRLYQCSVP-RARVVLS---WRDYLR---RLAPTALATALDIGLSNWSLEYVTL 110 (349)
T ss_pred hcCcCCc-hHHHHHHHHHHHHHHHHHHHHHhccCC-ccccCCc---HHHHHH---Hhhhhhhhhhcccccccceeeeeee
Confidence 4446665 346678899999888665332222111 1122222 223333 5666777777888999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHH
Q 015564 146 ATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASV 225 (404)
Q Consensus 146 ~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~V 225 (404)
+.|.+.++..++|+-+|+.++-=||.++.=.+-+++..+|+.+..+++.+ .+..|.++++++++++|+...
T Consensus 111 SlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq---------f~i~Gf~lv~~aS~~sGlRW~ 181 (349)
T KOG1443|consen 111 SLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ---------FNIEGFFLVLAASLLSGLRWA 181 (349)
T ss_pred eeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc---------eeehhHHHHHHHHHhhhhhHH
Confidence 99999999999999999999988999999889999999999998776531 344699999999999999999
Q ss_pred HHHHHhhhcC--CcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---cccccCChH-HHHHHHHHHHHHHHHHHHHHH
Q 015564 226 FNEYALKSQY--DTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN---LDILQGHSK-ATMLLIFNNAAQGILSCFFLK 299 (404)
Q Consensus 226 y~ekllk~~~--~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~---~~~f~g~~~-~~~~~i~~~a~ggl~vs~v~k 299 (404)
+.++++++++ .+++.....++.-+-.+..+ .....+||+.. ...|+.++. ..+-.+...+.||.+ ++++-
T Consensus 182 ~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll---~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~l-aF~l~ 257 (349)
T KOG1443|consen 182 FTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLL---PLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLL-AFLLE 257 (349)
T ss_pred HHHHHHhcCccccCCCeeeHHHhhhHHHHHHH---HHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHH-HHHHH
Confidence 9999999852 12222222222222222212 22334677631 122322222 233344445555543 33333
Q ss_pred Hh--------hhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564 300 YA--------DAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (404)
Q Consensus 300 ya--------~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~ 349 (404)
.. +.++-+.+--..-+.+.+++..+.+++++..-++|..+...|+..|..
T Consensus 258 ~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 258 FSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 22 333333444345578889999999999999999999999999988844
No 28
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.31 E-value=1.6e-09 Score=105.93 Aligned_cols=208 Identities=16% Similarity=0.162 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHh-hHHHHHHHHHHHHhCCCCCHHH----HHHHHHHHHHHHhhccCCCCCC
Q 015564 123 AVPAFLYAINNYLKFIMQLYFNPATVKMLSN-LKVLVIAVLLKIIMRRRFSIIQ----WEALALLLIGISVNQLRSLPEG 197 (404)
Q Consensus 123 ~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q-~k~l~tal~s~l~L~ekls~~q----wlal~Ll~~Gv~lv~~~~~~~~ 197 (404)
.+.+++..+.|.++|.+.+++..++...+.+ +.+++.++++.+++|||.++++ +.|+++.++|+.++...+..+.
T Consensus 63 ~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~ 142 (290)
T TIGR00776 63 LLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSA 142 (290)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccc
Confidence 3345678999999999999999999999999 9999999999999999999999 9999999999988765432111
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 015564 198 STAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYL---QNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQ 274 (404)
Q Consensus 198 ~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~---~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~ 274 (404)
. .........|++++++++++.++..+..|+. + . ++... +..-+.+.+++++.+. ....+ +.
T Consensus 143 ~-~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~-~-~--~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~-----~~ 207 (290)
T TIGR00776 143 G-IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF-G-V--DGLSVLLPQAIGMVIGGIIFNLGH-----ILAKP-----LK 207 (290)
T ss_pred c-cccccchhhHHHHHHHHHHHHHHHHHHHHHc-C-C--CcceehhHHHHHHHHHHHHHHHHH-----hcccc-----hH
Confidence 0 0000111349999999999999988888865 2 2 22222 2222222333322211 00011 11
Q ss_pred CChHHHHHHHHH---HHHHHHHHHHHHH-HhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHH----HHHHHHHHHHHH
Q 015564 275 GHSKATMLLIFN---NAAQGILSCFFLK-YADAILKKYSSTVATIFTGIASAVLFGHTLTMNFL----LGISIVFISMHQ 346 (404)
Q Consensus 275 g~~~~~~~~i~~---~a~ggl~vs~v~k-ya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~----lG~~lVi~gv~l 346 (404)
+...|..++. .+++..+.....+ +.+.......++..++.+++.++++++|..+..++ +|.++++.|+.+
T Consensus 208 --~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l 285 (290)
T TIGR00776 208 --KYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANI 285 (290)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHH
Confidence 1122222221 1222222222334 56666666677788999999999999999999999 999999999866
Q ss_pred h
Q 015564 347 F 347 (404)
Q Consensus 347 y 347 (404)
-
T Consensus 286 ~ 286 (290)
T TIGR00776 286 L 286 (290)
T ss_pred H
Confidence 4
No 29
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.6e-09 Score=104.55 Aligned_cols=223 Identities=12% Similarity=0.180 Sum_probs=148.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCC
Q 015564 119 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGS 198 (404)
Q Consensus 119 ~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~ 198 (404)
..++..++++|.+.-.-.-.+++|++.+++.++++..|+.||+.-.+++|.|.+..-|.++++..+|......++..
T Consensus 77 ~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~s--- 153 (314)
T KOG1444|consen 77 AKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLS--- 153 (314)
T ss_pred HHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccce---
Confidence 34677888888888888888999999999999999999999999999999999999999999999998876554321
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccC--C
Q 015564 199 TAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQG--H 276 (404)
Q Consensus 199 ~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g--~ 276 (404)
....|+...+..+++.+...+|.|+..+.. +-+-|.... +-.++++|...+.....|+...-.++. +
T Consensus 154 ------f~~~gY~w~~~n~~~~a~~~v~~kk~vd~~-~l~~~~lv~----yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~ 222 (314)
T KOG1444|consen 154 ------FNLRGYSWALANCLTTAAFVVYVKKSVDSA-NLNKFGLVF----YNNLLSLPPLLILSFITGELDALSLNFDNW 222 (314)
T ss_pred ------ecchhHHHHHHHHHHHHHHHHHHHHhhccc-cccceeEEe----ehhHHHHHHHHHHHHHhcchHHHHhhcccc
Confidence 122488999999999999999999988864 222221111 222222222222222223210000111 1
Q ss_pred -hHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccc
Q 015564 277 -SKATMLLIFNNAAQGILSCFF----LKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSL 351 (404)
Q Consensus 277 -~~~~~~~i~~~a~ggl~vs~v----~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~ 351 (404)
....|..+....+.|..+++. .++.++..-..........+.+...+++|.+.++.-++|..+-+.|..+|+...
T Consensus 223 ~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~ 302 (314)
T KOG1444|consen 223 SDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT 302 (314)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence 123455555555555544433 333333332222234455667777778889999999999999999988888754
Q ss_pred cccc
Q 015564 352 SKAK 355 (404)
Q Consensus 352 ~~~~ 355 (404)
.++|
T Consensus 303 ~~~k 306 (314)
T KOG1444|consen 303 FRKK 306 (314)
T ss_pred hhhc
Confidence 3333
No 30
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1.2e-11 Score=116.24 Aligned_cols=263 Identities=11% Similarity=0.164 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCc--chHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHH
Q 015564 73 PISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPL--LSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKM 150 (404)
Q Consensus 73 ~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~--~~~~~~~~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~v 150 (404)
|.-..+.+.++-..+|..+-....+-...-..|- ++.+ ..|+.+++.+ .|.+.-....+.++|++.+-|++
T Consensus 61 plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~----t~r~vlplsv---Vfi~mI~fnnlcL~yVgVaFYyv 133 (347)
T KOG1442|consen 61 PLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLA----TARQVLPLSV---VFILMISFNNLCLKYVGVAFYYV 133 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHH----HHHhhcchhh---eeeeehhccceehhhcceEEEEe
Confidence 3445577888888777765332221100001111 2222 2344334333 33322233344799999999999
Q ss_pred HHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 015564 151 LSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYA 230 (404)
Q Consensus 151 l~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekl 230 (404)
-+++-.+|+.++++++||+|-+..-..+..+.++|--+ +.+.|+. ..+..+.|.++++.++++-|+-++|.+|.
T Consensus 134 gRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l---GvdqE~~---~~~ls~~GvifGVlaSl~vAlnaiytkk~ 207 (347)
T KOG1442|consen 134 GRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL---GVDQEGS---TGTLSWIGVIFGVLASLAVALNAIYTKKV 207 (347)
T ss_pred ccchhhhHHHHhHHhhcccccccccceeehhheehhee---ccccccc---cCccchhhhHHHHHHHHHHHHHHHhhhee
Confidence 99999999999999999999998877777666666433 1122222 12345679999999999999999999988
Q ss_pred hhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHHHHHHHHHHHHHH----HHhhhHHH
Q 015564 231 LKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFL----KYADAILK 306 (404)
Q Consensus 231 lk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i~~~a~ggl~vs~v~----kya~~i~k 306 (404)
+-.- ++.+|...++...++.++.+|.+++.+-++. -.++-+-+.++.|.+....++.|..++++. |..++++.
T Consensus 208 l~~v-~~~iw~lt~ynnv~a~lLflpll~lnge~~~--v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplTh 284 (347)
T KOG1442|consen 208 LPPV-GDCIWRLTAYNNVNALLLFLPLLILNGEFQA--VVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTH 284 (347)
T ss_pred cccc-cCeehhhHHHHHHHHHHHHHHHHHHcchHHH--HcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEeccccee
Confidence 7654 5789999999999999988887664321111 122334456778888888888888777665 55677777
Q ss_pred HHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccc
Q 015564 307 KYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSL 351 (404)
Q Consensus 307 ~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~ 351 (404)
+...+..-..-.++++.+++|..+..-|-|-.+|+.|..+|....
T Consensus 285 nISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk 329 (347)
T KOG1442|consen 285 NISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVK 329 (347)
T ss_pred eecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHH
Confidence 766666677778889999999999999999999999999999853
No 31
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.13 E-value=1.6e-11 Score=114.27 Aligned_cols=213 Identities=14% Similarity=0.222 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 015564 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA 200 (404)
Q Consensus 121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~ 200 (404)
.|.+.|+...-.|.+.-.|.+|.+....+++-.-.++.+.+++|++||.|+...|..+++....||.++...+...++..
T Consensus 80 hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~a 159 (336)
T KOG2766|consen 80 HYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRA 159 (336)
T ss_pred HhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecccccc
Confidence 38888888899999999999999999999999999999999999999999999999999999999999877654333322
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHH
Q 015564 201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKAT 280 (404)
Q Consensus 201 ~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~ 280 (404)
.| ..+..|+.+++.++.+.|.+++..|.+.|+- +.....-++.+||.+++.+-++ ++... ----+|++..
T Consensus 160 gg-snp~~GD~lvi~GATlYaVSNv~EEflvkn~---d~~elm~~lgLfGaIIsaIQ~i----~~~~~--~~tl~w~~~i 229 (336)
T KOG2766|consen 160 GG-SNPVKGDFLVIAGATLYAVSNVSEEFLVKNA---DRVELMGFLGLFGAIISAIQFI----FERHH--VSTLHWDSAI 229 (336)
T ss_pred CC-CCCccCcEEEEecceeeeeccccHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHh----hhccc--eeeEeehHHH
Confidence 12 2334689999999999999999999999974 4555666889999998876533 22210 0012333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564 281 MLLIFNNAAQGILSCFFLKYADAILK-------KYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (404)
Q Consensus 281 ~~~i~~~a~ggl~vs~v~kya~~i~k-------~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~ 349 (404)
..+.. +.+.+...+...+-+.| +...-.+-.++.++ ..||-+.+|..++..+.+..|.++|..
T Consensus 230 ---~~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 230 ---FLYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred ---HHHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 11211 22333333333333333 22222333444444 678999999999999999999999943
No 32
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.91 E-value=5.6e-08 Score=85.17 Aligned_cols=138 Identities=14% Similarity=0.204 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc----CCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc----cccc-CC--h
Q 015564 209 AYIYTLIFITVPSMASVFNEYALKSQ----YDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNL----DILQ-GH--S 277 (404)
Q Consensus 209 G~ll~L~a~~~sala~Vy~ekllk~~----~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~----~~f~-g~--~ 277 (404)
|.++++.++++.++..++.|+.+++. .+.+.+....++...+.++.++..+. .+++... .... .. +
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~---~e~~~~~~~~~~~~~~~~~~~ 77 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFL---LEGPQLSSFFSEIFGEELSSD 77 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhhHHHHhhhhhhcch
Confidence 56788999999999999999999983 24455545555566666666555443 3333211 1111 11 2
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564 278 KATMLLIFNNAA----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (404)
Q Consensus 278 ~~~~~~i~~~a~----ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~ 349 (404)
...+..++..++ .......++++.+++..+....+..++.+++|+++|||++|...++|+++.+.|+++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 78 PNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 223333333333 234555778999999999999999999999999999999999999999999999999974
No 33
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.71 E-value=1.4e-07 Score=79.62 Aligned_cols=130 Identities=18% Similarity=0.312 Sum_probs=99.4
Q ss_pred HHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHHHHHH
Q 015564 48 GDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAF 127 (404)
Q Consensus 48 ~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpA~ 127 (404)
.+++++++-+++-|.--++ -+|...-+.+.++-++++..+++..++.+..++.. .|......+-++
T Consensus 10 LsA~fa~L~~iF~KIGl~~----vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~----------~k~~lflilSGl 75 (140)
T COG2510 10 LSALFAGLTPIFAKIGLEG----VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIG----------PKSWLFLILSGL 75 (140)
T ss_pred HHHHHHHHHHHHHHHhccc----cCccHHHHHHHHHHHHHHHHHHHhcCceecccccC----------cceehhhhHHHH
Confidence 3556677777777654332 44666778899999988888888776655432211 122223444456
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcc
Q 015564 128 LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL 191 (404)
Q Consensus 128 ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~ 191 (404)
.-.+.-.++|.|++.=+++-..=+.++.+++++++++++||||++..||+++++..+|++++..
T Consensus 76 a~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 76 AGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 6668889999999999999999999999999999999999999999999999999999988753
No 34
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.71 E-value=4.7e-07 Score=75.92 Aligned_cols=68 Identities=26% Similarity=0.381 Sum_probs=61.7
Q ss_pred HHHH-HHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCC
Q 015564 126 AFLY-AINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSL 194 (404)
Q Consensus 126 A~ly-~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~ 194 (404)
+++. ..++.+.++|+++.| +...++.++.|+++++++++++|||+++++|.++++.++|++++..++.
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 4444 488999999999999 5888999999999999999999999999999999999999999977653
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.67 E-value=2.5e-07 Score=77.29 Aligned_cols=122 Identities=21% Similarity=0.281 Sum_probs=88.4
Q ss_pred HhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHHHHHHH-HHH
Q 015564 53 VGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFL-YAI 131 (404)
Q Consensus 53 ~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpA~l-y~~ 131 (404)
++...++.|..-++ +++...++.+.+...+ ...+.....+... +..+ .++.....+.+++ ..+
T Consensus 3 ~a~~~~~~k~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~ 66 (126)
T PF00892_consen 3 WAIYSVFSKKLLKK----ISPLSITFWRFLIAGI-LLILLLILGRKPF----KNLS-------PRQWLWLLFLGLLGTAL 66 (126)
T ss_pred eeeHHHHHHHHhcc----CCHHHHHHHHHHHHHH-HHHHHHhhccccc----cCCC-------hhhhhhhhHhhccceeh
Confidence 44445555543332 6688888889988876 4433333222110 0011 1122245556666 579
Q ss_pred HHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc
Q 015564 132 NNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ 190 (404)
Q Consensus 132 ~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~ 190 (404)
.+.+.+.++++.+++..+++.++.|+++++++++++||+++++||.++++.++|+.++.
T Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 67 AYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998763
No 36
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.58 E-value=3.9e-07 Score=83.83 Aligned_cols=228 Identities=12% Similarity=0.153 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 015564 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA 200 (404)
Q Consensus 121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~ 200 (404)
++.+|+++-++--+-.--+++|++.+.|.+.+++.++.+|..-++++|.|++.....+.++..+.-....+.+....+
T Consensus 70 ~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~-- 147 (309)
T COG5070 70 KWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASA-- 147 (309)
T ss_pred hhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHH--
Confidence 455666655544444455789999999999999999999999999999999999999999988877666554421111
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCccccccCChHH
Q 015564 201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILV-TAIFKGPDNLDILQGHSKA 279 (404)
Q Consensus 201 ~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~-~~~~~g~~~~~~f~g~~~~ 279 (404)
.....--.|++.+...|+.++..-...||..|-....+ +...+|.-++++|.++. +..+++.++.+.-.+++.-
T Consensus 148 ~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d-----~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d 222 (309)
T COG5070 148 FKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKD-----FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVD 222 (309)
T ss_pred HHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccch-----hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChH
Confidence 00001113788888888877765555666655321111 12223445555555443 2234443333333444433
Q ss_pred H--HHHHHHHHHHH--HHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccccccc
Q 015564 280 T--MLLIFNNAAQG--ILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAK 355 (404)
Q Consensus 280 ~--~~~i~~~a~gg--l~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~~~ 355 (404)
. |..|....-.| ...+++.+..++..-...-++...-.++.|.++||++.+...+..+.+=+++..+|.....+++
T Consensus 223 ~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~ 302 (309)
T COG5070 223 SLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQ 302 (309)
T ss_pred HHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 44432222122 2334555555544444444555567788999999999999999999998888778876444433
No 37
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.55 E-value=1.5e-06 Score=78.61 Aligned_cols=216 Identities=14% Similarity=0.104 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCcc
Q 015564 126 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPV 205 (404)
Q Consensus 126 A~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~~~~~ 205 (404)
+++.+..|+++..|+..++++..+.+..+.-.++=+++++.||.|+...+.++.++...|++++.+.+.. . ..
T Consensus 60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~-~------a~ 132 (290)
T KOG4314|consen 60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE-H------AD 132 (290)
T ss_pred EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch-h------hh
Confidence 4667788999999999999999999999999999999999999999999999999999999998765431 1 12
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccccccCChHHHHHHH
Q 015564 206 AMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFN-FLGILVTAIFKGPDNLDILQGHSKATMLLI 284 (404)
Q Consensus 206 ~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~-~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i 284 (404)
.+.|+.+.+.++++++++-|.+++...+..-.+.-...-.+.++-.++. +|.++. .+.|.+. ++.+....|...
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL--~~T~VE~---~qsFA~~PWG~l 207 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALIL--AFTGVEH---LQSFAAAPWGCL 207 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHH--HHhchHH---HHHHhhCCchhh
Confidence 4569999999999999999888887765311122222223344444432 333222 1344321 111111123222
Q ss_pred HHHHH----HHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccccc
Q 015564 285 FNNAA----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSK 353 (404)
Q Consensus 285 ~~~a~----ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~ 353 (404)
+..|. ..+.+.+-+-...+++.+.....++...+....++-+-..+..++.|.+++++|-.+--.|.+|
T Consensus 208 ~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 208 CGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred hhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence 21111 1122222222234445445555566677778887777788999999999999997776665333
No 38
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.51 E-value=4.3e-06 Score=73.11 Aligned_cols=145 Identities=16% Similarity=0.262 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhhhhhhhhhc-cc--CCcccchHHHHHHHHHHHHHHHHHHHHHH-HhhcccCCCCCcchHHHHHHHhhhh
Q 015564 44 FLVVGDCMLVGLQPILVYMS-KV--DGRFKFSPISVNFLTEMTKVLFAIVMLFF-QARHQKVGEKPLLSISTFIQAARNN 119 (404)
Q Consensus 44 ll~~~~~~~~~~~~il~~~s-~~--~~~~~~~~~~~V~l~E~~Kl~is~~~l~~-~~~~~~~~~~~~~~~~~~~~~~r~~ 119 (404)
++...+.+..+.+.++++.. ++ .++.+.++....+.......++.....+. |..+... ........+..+..+..
T Consensus 3 ~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~ 81 (153)
T PF03151_consen 3 ILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSS-FFSEIFGEELSSDPNFI 81 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-HHHHhhhhhhcchHHHH
Confidence 34445555667766665532 22 12345778888888888888877765443 3322110 00000000000012233
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 015564 120 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN 189 (404)
Q Consensus 120 ~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv 189 (404)
......+++..+.|...|..+++.+|.+++++.+.|.+.+.++++++++|+++..|+.++++.++|+.+-
T Consensus 82 ~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 82 FLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 4566678889999999999999999999999999999999999999999999999999999999998763
No 39
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.50 E-value=6.8e-05 Score=70.59 Aligned_cols=205 Identities=16% Similarity=0.055 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 015564 123 AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMG 202 (404)
Q Consensus 123 ~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~~ 202 (404)
.+=++.-..-|.++|.+++.+|.++...+-.+-|+..+++ ..||..-.-|+++.++=++..+...++ .
T Consensus 75 ~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~----~sRr~~d~vwvaLAvlGi~lL~p~~~~--------~ 142 (292)
T COG5006 75 LAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALL----SSRRLRDFVWVALAVLGIWLLLPLGQS--------V 142 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHH----hccchhhHHHHHHHHHHHHhheeccCC--------c
Confidence 3334555678999999999999999999999999988865 467777777887766555544432211 1
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHH
Q 015564 203 LPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATML 282 (404)
Q Consensus 203 ~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~ 282 (404)
.+....|..+.+.+..||+.+=+..+|.-+.. ....-...-+ ..+.++.+|.-.. ..++ . +..++.....
T Consensus 143 ~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~--~g~~g~a~gm-~vAaviv~Pig~~---~ag~---~-l~~p~ll~la 212 (292)
T COG5006 143 WSLDPVGVALALGAGACWALYIVLGQRAGRAE--HGTAGVAVGM-LVAALIVLPIGAA---QAGP---A-LFSPSLLPLA 212 (292)
T ss_pred CcCCHHHHHHHHHHhHHHHHHHHHcchhcccC--CCchHHHHHH-HHHHHHHhhhhhh---hcch---h-hcChHHHHHH
Confidence 22345699999999999999877778877543 1221111121 2223333332111 1111 1 1112211100
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564 283 ---LIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (404)
Q Consensus 283 ---~i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~ 349 (404)
.++..++-..+=-..++..+.-.-+...++.+.+.++.+++++||.+|..+|+|+..|+.+..-...
T Consensus 213 LgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 213 LGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred HHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence 0111112122222344555544445556678899999999999999999999999999997654333
No 40
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.41 E-value=1.5e-05 Score=78.25 Aligned_cols=66 Identities=18% Similarity=0.294 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564 127 FLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR 192 (404)
Q Consensus 127 ~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~ 192 (404)
+++.+.+.+.+.|+.+.|++..+=+..+.+++.++++..+||||++++.|++.++.++|++++..-
T Consensus 58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence 567889999999999999999999999999999999999999999999999999999999876543
No 41
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.29 E-value=9.7e-05 Score=71.02 Aligned_cols=211 Identities=12% Similarity=0.122 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHH-HHHhhHHHHHHHHHHHHhCCCCCHHHHH----HHHHHHHHHHhhccCCCC
Q 015564 121 LLAVPAFLYAINNYLKFIMQLYFNPATVK-MLSNLKVLVIAVLLKIIMRRRFSIIQWE----ALALLLIGISVNQLRSLP 195 (404)
Q Consensus 121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~-vl~q~k~l~tal~s~l~L~ekls~~qwl----al~Ll~~Gv~lv~~~~~~ 195 (404)
.-.+-+++..+.+.++|.+.+++..+... +-..++++.++++.+++++|.-+..+|. |++++.+|+.+...++..
T Consensus 47 ~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~ 126 (269)
T PF06800_consen 47 VAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKK 126 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccc
Confidence 44556689999999999999998876554 4457889999999999999999999987 899999999998776643
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccC
Q 015564 196 EGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQG 275 (404)
Q Consensus 196 ~~~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g 275 (404)
++..+ +.....-|++..+++.+...++.+..+. .+ .+.+..-+-. ..|+++....+. .... ..+++.
T Consensus 127 ~~~~~-~~~~~~kgi~~Ll~stigy~~Y~~~~~~-~~----~~~~~~~lPq-aiGm~i~a~i~~---~~~~---~~~~~k 193 (269)
T PF06800_consen 127 SDKSS-SKSNMKKGILALLISTIGYWIYSVIPKA-FH----VSGWSAFLPQ-AIGMLIGAFIFN---LFSK---KPFFEK 193 (269)
T ss_pred ccccc-cccchhhHHHHHHHHHHHHHHHHHHHHh-cC----CChhHhHHHH-HHHHHHHHHHHh---hccc---cccccc
Confidence 32110 0111123666666666655554444333 22 2332211111 123322211111 1111 122333
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHhCCCccH----HHHHHHHHHHHHHH
Q 015564 276 HSKATMLLIFNNAAQGILSCFFLKYADAILKKYS-STVATIFTGIASAVLFGHTLTM----NFLLGISIVFISMH 345 (404)
Q Consensus 276 ~~~~~~~~i~~~a~ggl~vs~v~kya~~i~k~~a-~~~~iv~s~lls~llfge~lt~----~~~lG~~lVi~gv~ 345 (404)
.++.-.+.=+.-+++.+..-...+..+. ..+|. +-++++++++.++++++|.=+. ..++|.++|+.|..
T Consensus 194 ~~~~nil~G~~w~ignl~~~is~~~~G~-a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 194 KSWKNILTGLIWGIGNLFYLISAQKNGV-ATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred chHHhhHHHHHHHHHHHHHHHhHHhccc-hhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 2222222212223444433333332222 22222 2377899999999999998664 46788888887754
No 42
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.16 E-value=2.3e-05 Score=65.71 Aligned_cols=68 Identities=10% Similarity=0.128 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc
Q 015564 123 AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ 190 (404)
Q Consensus 123 ~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~ 190 (404)
++-.++|.+...+.-.+++.+|.+.+..+.++.++.+++++++++|||++++||+++.+..+|++++.
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 33347789999999999999999999999999999999999999999999999999999999998874
No 43
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.16 E-value=5.2e-05 Score=72.08 Aligned_cols=131 Identities=15% Similarity=0.083 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhH
Q 015564 42 NVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVL 121 (404)
Q Consensus 42 ~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 121 (404)
..++....++.++...+..|...++ ++.++.+....+.++-.++.........+. .+. +. ++...
T Consensus 129 G~~~~l~a~~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~-~~-------~~~~~ 193 (260)
T TIGR00950 129 GLLLGLGSGISFALGTVLYKRLVKK--EGPELLQFTGWVLLLGALLLLPFAWFLGPN-----PQA-LS-------LQWGA 193 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhc--CCchHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCc-ch-------HHHHH
Confidence 3444455566688887777654432 121122222223444444433333322211 111 11 11112
Q ss_pred HHHHHH-HHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 015564 122 LAVPAF-LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGIS 187 (404)
Q Consensus 122 ~~vpA~-ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~ 187 (404)
....++ ...+...+.+.++++.++++..++..+.|+++++++++++||++++.||.+..+.++|++
T Consensus 194 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 194 LLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 333443 356788899999999999999999999999999999999999999999999999999863
No 44
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.14 E-value=3.3e-05 Score=64.28 Aligned_cols=118 Identities=19% Similarity=0.264 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHH-----HHHHHHHHHHHH
Q 015564 219 VPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATM-----LLIFNNAAQGIL 293 (404)
Q Consensus 219 ~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~-----~~i~~~a~ggl~ 293 (404)
++|...++.++..++. ++...+.+-+..+.+ .++.... .+... ...++...+ ..++..+++..+
T Consensus 2 ~~a~~~~~~k~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (126)
T PF00892_consen 2 SWAIYSVFSKKLLKKI---SPLSITFWRFLIAGI-LLILLLI---LGRKP----FKNLSPRQWLWLLFLGLLGTALAYLL 70 (126)
T ss_pred eeeeHHHHHHHHhccC---CHHHHHHHHHHHHHH-HHHHHHh---hcccc----ccCCChhhhhhhhHhhccceehHHHH
Confidence 4677888899988863 343344444444443 2222221 11110 112222211 112223455566
Q ss_pred HHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564 294 SCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF 347 (404)
Q Consensus 294 vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly 347 (404)
....+|+.+.........+.++++.++++++++|+++..+++|+.+++.|+++.
T Consensus 71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 777889998888888889999999999999999999999999999999998764
No 45
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.10 E-value=5.3e-05 Score=76.08 Aligned_cols=145 Identities=14% Similarity=0.161 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccC-C--cccchHHHHHHHHHHHHHHHHHHHHH-HHhhcccCC--C--CCcchHHHHH
Q 015564 42 NVFLVVGDCMLVGLQPILVYMSKVD-G--RFKFSPISVNFLTEMTKVLFAIVMLF-FQARHQKVG--E--KPLLSISTFI 113 (404)
Q Consensus 42 ~~ll~~~~~~~~~~~~il~~~s~~~-~--~~~~~~~~~V~l~E~~Kl~is~~~l~-~~~~~~~~~--~--~~~~~~~~~~ 113 (404)
.+++...+.+.++.+.++.|...++ + ..++++...-...-++..++++.+.. .|....... . .++. ...+.
T Consensus 195 G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~-~~~~~ 273 (350)
T PTZ00343 195 AFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMT-NYTKG 273 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccc-ccchH
Confidence 4445555566688888877643222 1 11345554444344555555554433 332110000 0 0000 00000
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc
Q 015564 114 QAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ 190 (404)
Q Consensus 114 ~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~ 190 (404)
. -......-++.|.++|.+.|++++++++.++++...+||+++.++++++++|+++..|+++.++.++|+.+.+
T Consensus 274 ~---~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 274 I---IIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 0 0112334568999999999999999999999999999999999999999999999999999999999998764
No 46
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.02 E-value=9.5e-05 Score=72.36 Aligned_cols=142 Identities=11% Similarity=0.107 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHH-----Hh
Q 015564 42 NVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQ-----AA 116 (404)
Q Consensus 42 ~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~ 116 (404)
..++....++.++.+.+..|....+ .++++.+..+.+.....+..+.+........ ... ..+.+ ..
T Consensus 146 G~~~~l~a~~~~a~~~v~~k~~~~~--~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~------~~~-~~~~~~~~~~~~ 216 (302)
T TIGR00817 146 GFLSAMISNITFVSRNIFSKKAMTI--KSLDKTNLYAYISIMSLFLLSPPAFITEGPP------FLP-HGFMQAISGVNV 216 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--CCCCcccHHHHHHHHHHHHHHHHHHHHcchH------HHH-HHHHHhhcccCc
Confidence 4455555666788887776533221 1356666666666666555444433221100 000 00000 00
Q ss_pred hhhhH-HHHHHH-HHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564 117 RNNVL-LAVPAF-LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR 192 (404)
Q Consensus 117 r~~~~-~~vpA~-ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~ 192 (404)
...+. ..+.+. .|...|.+.|.+++++++.++++...++|+++++++++++||+++..|+++.++.++|+.+.+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~ 294 (302)
T TIGR00817 217 TKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV 294 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 01111 223333 67777888899999999999999999999999999999999999999999999999999988654
No 47
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.92 E-value=5.9e-05 Score=63.92 Aligned_cols=127 Identities=16% Similarity=0.251 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCcch--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHHH
Q 015564 210 YIYTLIFITVPSMASVFNEYALKSQYDTSI--YLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNN 287 (404)
Q Consensus 210 ~ll~L~a~~~sala~Vy~ekllk~~~~~s~--~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i~~~ 287 (404)
.+..+++++++|+..++.+--+++. |++. .+|+.-+. ++..... ...|+... -...+...|..+...
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~----~~l~~v~----~~~g~~~~--~~~~~~k~~lflilS 73 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVIL----IFLLIVL----LVTGNWQA--GGEIGPKSWLFLILS 73 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHH----HHHHHHH----HhcCceec--ccccCcceehhhhHH
Confidence 3567888899999877555545543 2222 23333221 1111111 12333110 011233344443333
Q ss_pred HH----HHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564 288 AA----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF 347 (404)
Q Consensus 288 a~----ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly 347 (404)
++ +-++-...+|..++.........++++++++|++++||++|..+++|..+|.+|..+.
T Consensus 74 Gla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailv 137 (140)
T COG2510 74 GLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILV 137 (140)
T ss_pred HHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence 32 2234445556566666667777899999999999999999999999999999987553
No 48
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.83 E-value=0.00073 Score=68.13 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCC
Q 015564 131 INNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS 193 (404)
Q Consensus 131 ~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~ 193 (404)
+...++++++++++|+...+...+.|++++++++++|+|++++.|+++.++.+.|+.+++.+.
T Consensus 268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 456678889999999999999999999999999999999999999999999999999987643
No 49
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.77 E-value=0.0017 Score=55.85 Aligned_cols=119 Identities=14% Similarity=0.104 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHHHH
Q 015564 209 AYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNA 288 (404)
Q Consensus 209 G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i~~~a 288 (404)
|+++.++++++.+.+.+..++-+++..+.+.... . +. ....+ . . +..+.+..+...+
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-------~-~~-~~~~~-----~--------~-p~~~i~lgl~~~~ 59 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-------F-IA-ALLAF-----G--------L-ALRAVLLGLAGYA 59 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-------H-HH-HHHHH-----h--------c-cHHHHHHHHHHHH
Confidence 6788888888888888888877766422121110 0 00 00000 0 0 0113344444444
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHH--HhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564 289 AQGILSCFFLKYADAILKKYSSTVATIFTGIASAV--LFGHTLTMNFLLGISIVFISMHQFFSS 350 (404)
Q Consensus 289 ~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~l--lfge~lt~~~~lG~~lVi~gv~ly~~~ 350 (404)
+.-.+-.+++|..|........+...++..+.++. +|||++|+.+++|+++|+.|+++-++.
T Consensus 60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 44455556677776555444444555666667764 899999999999999999999997764
No 50
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.77 E-value=0.0011 Score=64.96 Aligned_cols=141 Identities=19% Similarity=0.331 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHH--HhhcccCCCCCcchHHHHH-HHhhh
Q 015564 42 NVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFF--QARHQKVGEKPLLSISTFI-QAARN 118 (404)
Q Consensus 42 ~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~--~~~~~~~~~~~~~~~~~~~-~~~r~ 118 (404)
.++++..+.++.+.+++..+....+ ++-++...++..++..+++....... ..... +...+. +.+..
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~--~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~--------~~~~f~~~~p~~ 224 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKK--YGKSPWELMFYTNLFSLPFLLILLFLLPTGEFR--------SAIRFISAHPSV 224 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhh--------HHHHHHHHhHHH
Confidence 4455555555677777766633322 33456789999999999988777655 22111 001121 22222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564 119 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR 192 (404)
Q Consensus 119 ~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~ 192 (404)
......-++.-++.....|.-.+..++.+..++..++-+.+.++|.+++++++++.||.++++.+.|..+-...
T Consensus 225 ~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~ 298 (303)
T PF08449_consen 225 LLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA 298 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence 22344445555555666677789999999999999999999999999999999999999999999999886543
No 51
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.77 E-value=0.00092 Score=65.34 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564 127 FLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR 192 (404)
Q Consensus 127 ~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~ 192 (404)
+.-.+...+++.++++++++..+++..+.|++.+++++++++|+++..||++.++.+.|+.+....
T Consensus 223 ~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 223 AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 344567888999999999999999999999999999999999999999999999999999887543
No 52
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.73 E-value=0.001 Score=64.98 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564 129 YAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR 192 (404)
Q Consensus 129 y~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~ 192 (404)
-.++..++++++++.++...+++..+.|++++++++++++|+++..||++.++.++|++.....
T Consensus 219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 3477778899999999999999999999999999999999999999999999999999887554
No 53
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.70 E-value=0.002 Score=62.80 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564 129 YAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR 192 (404)
Q Consensus 129 y~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~ 192 (404)
-.+.+.+.+++++++++++..++..+.|+++++++++++||+++..||.+.++.+.|+.+.+..
T Consensus 223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3467789999999999999999999999999999999999999999999999999999887653
No 54
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.67 E-value=0.0014 Score=63.47 Aligned_cols=129 Identities=12% Similarity=0.003 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHH----H
Q 015564 210 YIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLI----F 285 (404)
Q Consensus 210 ~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i----~ 285 (404)
+++.++++++.+...+..|+..+++ +.. + .+.+..+.++..|.... ...+.. +...+...|..+ +
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~---~~~-~-~~~~~~~~~~l~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~ 71 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE---PDF-L-WWALLAHSVLLTPYGLW--YLAQVG----WSRLPATFWLLLAISAV 71 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch---hHH-H-HHHHHHHHHHHHHHHHH--hcccCC----CCCcchhhHHHHHHHHH
Confidence 4677888899999999998777653 221 1 22223333333332221 000110 111111122222 2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564 286 NNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (404)
Q Consensus 286 ~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~ 349 (404)
..+.+..+....+++.+........+..++++.++++++++|+++...++|.++++.|+.+-..
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 2333445556667888877777778889999999999999999999999999999999876544
No 55
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.60 E-value=0.0006 Score=57.90 Aligned_cols=72 Identities=11% Similarity=0.205 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCC
Q 015564 122 LAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS 193 (404)
Q Consensus 122 ~~vpA~ly~~~n~L~f~al~~l~~~t~~vl-~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~ 193 (404)
..+..++|.+...+...+++++|.+.+.-+ ...-.+.+++.+++++||+++..||+++.+.++|++.+...+
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 455678899999999999999999877666 579999999999999999999999999999999999886543
No 56
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.59 E-value=0.0039 Score=61.04 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCC
Q 015564 131 INNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS 193 (404)
Q Consensus 131 ~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~ 193 (404)
+...+.+.+++++++.+..++..+.|++.+++++++++|+++..||.+.++.++|+.+...+.
T Consensus 227 ~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 227 VGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 567788889999999999999999999999999999999999999999999999998876543
No 57
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.59 E-value=0.0013 Score=64.35 Aligned_cols=133 Identities=16% Similarity=0.186 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhh
Q 015564 38 QRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAAR 117 (404)
Q Consensus 38 ~~~l~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r 117 (404)
++++...++. .+.|+.+.+..|... +++.+.+|..-.-=++.+..+....+ + .+|.. .+
T Consensus 151 ~~Gi~~~l~s--g~~y~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~-~----~~~~~--------~~ 209 (290)
T TIGR00776 151 KKGILLLLMS--TIGYLVYVVVAKAFG------VDGLSVLLPQAIGMVIGGIIFNLGHI-L----AKPLK--------KY 209 (290)
T ss_pred hhHHHHHHHH--HHHHHHHHHHHHHcC------CCcceehhHHHHHHHHHHHHHHHHHh-c----ccchH--------HH
Confidence 3455555555 555888777776442 34444433333322223333322221 1 12221 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh-ccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHHhhcc
Q 015564 118 NNVLLAVPAFLYAINNYLKFIMQL-YFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQW----EALALLLIGISVNQL 191 (404)
Q Consensus 118 ~~~~~~vpA~ly~~~n~L~f~al~-~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qw----lal~Ll~~Gv~lv~~ 191 (404)
..+...+.+++..+.|.+++.+++ +++++++.++.+..|+..++++++++||+.+++|+ .+.++...|+.++..
T Consensus 210 ~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 210 AILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 223445577778899999999999 99999999999999999999999999999999999 999999999888643
No 58
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.55 E-value=0.00065 Score=58.47 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHH--HhCCCCCHHHHHHHHHHHHHHHhhccCC
Q 015564 126 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKI--IMRRRFSIIQWEALALLLIGISVNQLRS 193 (404)
Q Consensus 126 A~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l--~L~ekls~~qwlal~Ll~~Gv~lv~~~~ 193 (404)
-++|.+...+..++++.+|++.+.-+....+..+++.++. ++||+++++||+++++.++|+.++..++
T Consensus 55 l~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 55 LAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 3688899999999999999999998888888888888885 8999999999999999999999987543
No 59
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.49 E-value=0.0013 Score=54.59 Aligned_cols=70 Identities=14% Similarity=0.076 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHH-HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcc
Q 015564 122 LAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL 191 (404)
Q Consensus 122 ~~vpA~ly~~~n~L~f~al~~l~~~t~-~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~ 191 (404)
..+..++|.+...+.-.+++.+|.++. .+-...-.+.+++.+++++||++++.|++++.+..+|++....
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 345578899999999999999998665 5556699999999999999999999999999999999988754
No 60
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.45 E-value=0.0014 Score=54.81 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564 122 LAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR 192 (404)
Q Consensus 122 ~~vpA~ly~~~n~L~f~al~~l~~~t~~vl-~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~ 192 (404)
....-++|.+...+...+++.+|.+++.-+ .....+.+++.+++++||+++..|++++.+.++|++.+...
T Consensus 33 ~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344567888999999999999999877655 66899999999999999999999999999999999998654
No 61
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.0017 Score=53.62 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHH-HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcc
Q 015564 121 LLAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL 191 (404)
Q Consensus 121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~-~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~ 191 (404)
...+..+.|.+...+.-.|++++|.+++ .+-...-++.|++.+++++||+++..|++++.++.+|++....
T Consensus 32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 3455677888999999999999998665 6778899999999999999999999999999999999988754
No 62
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.33 E-value=0.0025 Score=53.20 Aligned_cols=69 Identities=12% Similarity=0.056 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHH-HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc
Q 015564 122 LAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ 190 (404)
Q Consensus 122 ~~vpA~ly~~~n~L~f~al~~l~~~t~-~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~ 190 (404)
..+..++|.+...+.-.+++++|.++. .+-...-.+.+++.+++++||++++.||+++.+.++|++...
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 455567888999999999999999665 666779999999999999999999999999999999998763
No 63
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.16 E-value=0.015 Score=56.82 Aligned_cols=133 Identities=8% Similarity=-0.000 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-c-cccccCChHHHHH--H
Q 015564 208 GAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPD-N-LDILQGHSKATML--L 283 (404)
Q Consensus 208 ~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~-~-~~~f~g~~~~~~~--~ 283 (404)
.|+++.+++++++|..+++.+.. .+ .++.....+=.+++.++.++... .+++. . ...++.+....+. .
T Consensus 8 ~g~~~~l~a~~~wg~~~~~~k~~-~~---~~~~~~~~~R~~~a~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 79 (296)
T PRK15430 8 QGVLLALAAYFIWGIAPAYFKLI-YY---VPADEILTHRVIWSFFFMVVLMS----ICRQWSYLKTLIQTPQKIFMLAVS 79 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-cC---CCHHHHHHHHHHHHHHHHHHHHH----HHccHHHHHHHHcCHHHHHHHHHH
Confidence 48889999999999999999653 32 34443333334445443333221 12110 0 0001111111111 1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015564 284 IFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF 348 (404)
Q Consensus 284 i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~ 348 (404)
.+..++...+..+.+++.+........++.++++.++++++++|+++..+++|.++.+.|+.+..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 22233344455566788887777888889999999999999999999999999999999987654
No 64
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.16 E-value=0.016 Score=55.20 Aligned_cols=132 Identities=10% Similarity=0.059 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccccCChHH-HHHHHH-
Q 015564 209 AYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN-LDILQGHSKA-TMLLIF- 285 (404)
Q Consensus 209 G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~-~~~f~g~~~~-~~~~i~- 285 (404)
|.++++++++++|..++..|. ..+ .++....+.=.+++.++.++.... ...... ..-+...+.. .+..+.
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~-~~~---~~~~~i~~~R~~~a~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKL-LKP---LPATDILGHRMIWSFPFMLLSVTL---FRQWAALIERLKRIQKRPLILSLLL 75 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-hcc---CCHHHHHHHHHHHHHHHHHHHHHH---HcchHHHHHHHhCcccchHHHHHHH
Confidence 678889999999999999887 332 344433333334444432222211 111000 0001111111 111111
Q ss_pred ---HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564 286 ---NNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF 347 (404)
Q Consensus 286 ---~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly 347 (404)
..+....+....++|.+........++.|+++.+++.++++|+++..+++|..+.+.|+.+-
T Consensus 76 ~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 76 CGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 12233345556678877777777788999999999999999999999999999999997643
No 65
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.13 E-value=0.0082 Score=57.88 Aligned_cols=121 Identities=15% Similarity=0.166 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHh
Q 015564 37 KQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAA 116 (404)
Q Consensus 37 k~~~l~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 116 (404)
..+++..+++. .+.|..+..+.++... ++. .+++-+.+.++++..++..-.+ ++...
T Consensus 136 ~~kgi~~Ll~s--tigy~~Y~~~~~~~~~------~~~-~~~lPqaiGm~i~a~i~~~~~~------~~~~~-------- 192 (269)
T PF06800_consen 136 MKKGILALLIS--TIGYWIYSVIPKAFHV------SGW-SAFLPQAIGMLIGAFIFNLFSK------KPFFE-------- 192 (269)
T ss_pred hhhHHHHHHHH--HHHHHHHHHHHHhcCC------Chh-HhHHHHHHHHHHHHHHHhhccc------ccccc--------
Confidence 34456555554 4457777777776543 343 3466778888877665443221 11111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 015564 117 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA 180 (404)
Q Consensus 117 r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~ 180 (404)
|..++=.++++++.+.|.+.+++.+.+-.++.-.+.|+.++...+-+.++|||+=+++++....
T Consensus 193 k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~ 256 (269)
T PF06800_consen 193 KKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL 256 (269)
T ss_pred cchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence 1233457889999999999999999999999999999999999999999999999999886543
No 66
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.08 E-value=0.005 Score=51.54 Aligned_cols=60 Identities=8% Similarity=0.092 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015564 289 AQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF 348 (404)
Q Consensus 289 ~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~ 348 (404)
+...+...++|..+-...-...+++++++.++|+++|||++|..+++|.++++.|+.+-.
T Consensus 49 l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 49 LAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 344556677777664444444448899999999999999999999999999999987543
No 67
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.00 E-value=0.0091 Score=49.93 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564 289 AQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (404)
Q Consensus 289 ~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~ 350 (404)
+.-.+.+.++|+.+ ++.-...+....+.+++.|+++|||++|+..++|+++++.|+.+-+..
T Consensus 42 ~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 33345566777655 222233455688999999999999999999999999999999877653
No 68
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.00 E-value=0.0081 Score=51.00 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564 286 NNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (404)
Q Consensus 286 ~~a~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~ 350 (404)
..++.-.+.+.++|+.+ ++.-...+...++.+.+.|+++|||++|+..++|+++++.|+..-+..
T Consensus 39 ~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 39 MISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 33444456667777765 333344456788999999999999999999999999999998876553
No 69
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.98 E-value=0.0019 Score=54.20 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccChHHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 015564 119 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN 189 (404)
Q Consensus 119 ~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl-~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv 189 (404)
+++|.+|=++|.....++|+.++..|.+...-+ +++..++|++.++++.+|..+++.|+++.+.++|+.+.
T Consensus 41 n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 41 NPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 357999999999999999999999999877665 69999999999999999999999999999999998763
No 70
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.0067 Score=59.25 Aligned_cols=68 Identities=13% Similarity=0.289 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCC
Q 015564 126 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS 193 (404)
Q Consensus 126 A~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~ 193 (404)
-+.+.+.+.+.|.|+.+-|++...-+..+.++..|+++..+||||++..-.++.++.++|-.++....
T Consensus 71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence 35677899999999999999999999999999999999999999999999999999999987765543
No 71
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.84 E-value=0.0026 Score=62.84 Aligned_cols=144 Identities=13% Similarity=0.139 Sum_probs=94.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHH-HHHHHHhhcccC--CCCCcchHHHH
Q 015564 36 SKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAI-VMLFFQARHQKV--GEKPLLSISTF 112 (404)
Q Consensus 36 ~k~~~l~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~-~~l~~~~~~~~~--~~~~~~~~~~~ 112 (404)
-.+.++..-+ ...+.++.|.++.+....+.+++.++.......--+.+++.+ .+...+.+.... ...+. + +
T Consensus 160 fn~~G~i~a~--~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~-~---~ 233 (316)
T KOG1441|consen 160 FNLFGFISAM--ISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPW-F---V 233 (316)
T ss_pred ccHHHHHHHH--HHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeecccc-c---h
Confidence 3444444333 334447778887775444333556665544333333333333 332222211110 00111 1 0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc
Q 015564 113 IQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ 190 (404)
Q Consensus 113 ~~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~ 190 (404)
+.+.+..-++++.++|...|..+.+++|-|+++....|-+.+.+.+++++++++++.|.++..+.++|+.+-.
T Consensus 234 -----~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 234 -----TFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 1234455559999999999999999999999999999999999999999999999999999999999998853
No 72
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=96.83 E-value=0.017 Score=48.17 Aligned_cols=60 Identities=25% Similarity=0.296 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564 289 AQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (404)
Q Consensus 289 ~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~ 349 (404)
.+.....+..+|.+. .......+.++++.+++.++|+|+++...++|..+++.|+.+-..
T Consensus 47 ~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 47 VAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAW 106 (113)
T ss_pred HHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 344555677788885 555777789999999999999999999999999999999876554
No 73
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.68 E-value=0.0056 Score=57.94 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 015564 131 INNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN 189 (404)
Q Consensus 131 ~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv 189 (404)
+-..|-.++++.+|..+|.++.++.|.+.|+..+++|+|++|..||+++.+...+++=.
T Consensus 222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 55677888999999999999999999999999999999999999999999988876533
No 74
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.56 E-value=0.01 Score=48.04 Aligned_cols=59 Identities=10% Similarity=0.271 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhccChHHH-HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 015564 124 VPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALL 182 (404)
Q Consensus 124 vpA~ly~~~n~L~f~al~~l~~~t~-~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll 182 (404)
..-.+|.+...+.-.+++++|.++. .+...+..+.+++.+.+++||+++..||.++.+.
T Consensus 34 ~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 34 LAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3345899999999999999999777 5556799999999999999999999999998763
No 75
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.51 E-value=0.13 Score=48.80 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=62.3
Q ss_pred HHHHHHHHH-HHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564 122 LAVPAFLYA-INNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR 192 (404)
Q Consensus 122 ~~vpA~ly~-~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~ 192 (404)
....+++-. +...+.+.+++..++.....+..+.|++.+++++++++|+++..||.+.++.+.|+.+...+
T Consensus 217 ~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 217 LLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 344444444 68889999999999999999999999999999999999999999999999999999988654
No 76
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.50 E-value=0.16 Score=42.46 Aligned_cols=62 Identities=18% Similarity=0.095 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564 286 NNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF 347 (404)
Q Consensus 286 ~~a~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly 347 (404)
..++.-.+.+.++|+.+ ++.-...+....+.+++.++++|||++|+..++|+++++.|+..-
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 33444556777788765 333345566778999999999999999999999999999998764
No 77
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.37 E-value=0.037 Score=54.52 Aligned_cols=115 Identities=11% Similarity=0.083 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHH
Q 015564 207 MGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFN 286 (404)
Q Consensus 207 ~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i~~ 286 (404)
.+|.++.+.++++.+.+.++.|+-.++.++.+..... . . .. .+. ++..|.-++.
T Consensus 6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~-~------~---~~--------------~l~--~~~W~~G~~~ 59 (300)
T PF05653_consen 6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGS-G------G---RS--------------YLR--RPLWWIGLLL 59 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-h------h---hH--------------HHh--hHHHHHHHHH
Confidence 4699999999999999888888877664221111000 0 0 00 001 1222333344
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564 287 NAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF 347 (404)
Q Consensus 287 ~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly 347 (404)
.++|.+.....+.+++..+..+..+++++++.+++.++++|+++...++|.++++.|..+-
T Consensus 60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~li 120 (300)
T PF05653_consen 60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLI 120 (300)
T ss_pred HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheee
Confidence 4556665566778889888888888999999999999999999999999999999987543
No 78
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.30 E-value=0.044 Score=45.36 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564 289 AQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (404)
Q Consensus 289 ~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~ 349 (404)
+.-.+.+..+|+.+ .+.-+..+...++.+++.++++|||++|...++|..+++.|+..-+.
T Consensus 42 ~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 42 LSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 33446677788766 33335556788899999999999999999999999999999876554
No 79
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.28 E-value=1.4 Score=44.12 Aligned_cols=102 Identities=12% Similarity=0.050 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHH-HHHHhhHHHHHHHHHHHHhCCCC---CH----HHHHHHHHHHHHHHhhcc---
Q 015564 123 AVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVLVIAVLLKIIMRRRF---SI----IQWEALALLLIGISVNQL--- 191 (404)
Q Consensus 123 ~vpA~ly~~~n~L~f~al~~l~~~t~-~vl~q~k~l~tal~s~l~L~ekl---s~----~qwlal~Ll~~Gv~lv~~--- 191 (404)
.+-+++..+.|.+++.+++++..+.. -+-..+..+..+++..++++|-- +. .-..++++..+|+++...
T Consensus 77 ~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 77 FLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33457888999999999999988665 45566889999999999998643 33 345678888889999877
Q ss_pred -CCCCCCCCCCCCccchHHHHHHHHHHHHHHHHH
Q 015564 192 -RSLPEGSTAMGLPVAMGAYIYTLIFITVPSMAS 224 (404)
Q Consensus 192 -~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~ 224 (404)
++..++.++.+.....-|+++.+++.+.+++.+
T Consensus 157 ~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 157 LKERKMGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred hcccccccccccccchHhHHHHHHHHHHHHHHHH
Confidence 433211100011112348888888877777666
No 80
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.26 E-value=0.052 Score=44.99 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015564 288 AAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF 348 (404)
Q Consensus 288 a~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~ 348 (404)
++.-.+.+.++|+.+ .+.-+..+...++.+.+.|+++|||++|+..++|+.+++.|+..-+
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 344456667777665 3433555667889999999999999999999999999999987654
No 81
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=95.78 E-value=0.41 Score=47.83 Aligned_cols=62 Identities=13% Similarity=0.173 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564 288 AAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (404)
Q Consensus 288 a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~ 349 (404)
..+..++...++|.+-.......+.+++++.++|++++++++++.+++|+.++++|+.+-..
T Consensus 90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~ 151 (334)
T PF06027_consen 90 VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVV 151 (334)
T ss_pred HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheee
Confidence 34566777888888876667788899999999999999999999999999999999776544
No 82
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.50 E-value=1.1 Score=38.85 Aligned_cols=130 Identities=15% Similarity=0.170 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHHHHHH
Q 015564 211 IYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQ 290 (404)
Q Consensus 211 ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i~~~a~g 290 (404)
++.+.+..+-++.+..+-++.++- .+++.-.+.-+..|.+...+..+. .+++ ....+.+.+||.|.-=+..++.
T Consensus 4 lla~~aG~~i~~q~~~N~~L~~~~--gs~~~as~i~~~~G~i~~~i~~~~---~~~~-~~~~~~~~p~w~~lGG~lG~~~ 77 (138)
T PF04657_consen 4 LLALLAGALIALQAAFNGQLGKAL--GSPLVASFISFGVGFILLLIILLI---TGRP-SLASLSSVPWWAYLGGLLGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHHHHHH---hccc-ccchhccCChHHhccHHHHHHH
Confidence 455666666777888888877764 345555555555666655443332 2322 2222344455555421122222
Q ss_pred HHHHHHHHHHhhhHH-HHHHHhhHHHHHHHHHHH-Hh---CCCccHHHHHHHHHHHHHHHH
Q 015564 291 GILSCFFLKYADAIL-KKYSSTVATIFTGIASAV-LF---GHTLTMNFLLGISIVFISMHQ 346 (404)
Q Consensus 291 gl~vs~v~kya~~i~-k~~a~~~~iv~s~lls~l-lf---ge~lt~~~~lG~~lVi~gv~l 346 (404)
-....+.+...+... .......+++.+.+++.+ +| .++++...++|..+++.|+++
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 222333333333222 233344556677777765 44 468999999999999999864
No 83
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=95.25 E-value=0.17 Score=48.63 Aligned_cols=65 Identities=18% Similarity=0.112 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHH-HhCCCc-----cHHHHHHHHHHHHHHHHhcccc
Q 015564 287 NAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAV-LFGHTL-----TMNFLLGISIVFISMHQFFSSL 351 (404)
Q Consensus 287 ~a~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~l-lfge~l-----t~~~~lG~~lVi~gv~ly~~~~ 351 (404)
-+.|++++-.++|..+ ++--....+.+.+.....|-+ +||.++ .+.-.+|++++++|..+|...+
T Consensus 65 W~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik 136 (254)
T PF07857_consen 65 WATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIK 136 (254)
T ss_pred hhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeec
Confidence 3456665556666554 333345555666666666644 776543 3456899999999998887643
No 84
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.07 E-value=0.03 Score=52.23 Aligned_cols=66 Identities=9% Similarity=0.080 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 015564 122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGIS 187 (404)
Q Consensus 122 ~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~ 187 (404)
...+.++.+++..+....+++.|+.+..+...+.++++++++.++++++++..||++..+.+.|+.
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 445556777888899999999999999999999999999999999999999999999999998864
No 85
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.90 E-value=0.13 Score=41.59 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhhHH-HHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHH
Q 015564 291 GILSCFFLKYADAIL-KKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIV 340 (404)
Q Consensus 291 gl~vs~v~kya~~i~-k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lV 340 (404)
-.+.+.++|+.+-.. -...+...++.+.+.|+++|||++|..+++|+.+|
T Consensus 43 ~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 43 FYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 345666777765322 24445678899999999999999999999999876
No 86
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=94.40 E-value=2 Score=41.81 Aligned_cols=128 Identities=19% Similarity=0.227 Sum_probs=84.4
Q ss_pred HHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHH-HHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHHHHH
Q 015564 48 GDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTK-VLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPA 126 (404)
Q Consensus 48 ~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~K-l~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpA 126 (404)
..|+.|+.++.++|..+.| +.+- ++-|.+= +.+|++.++....... ... ....+.++.+..-+
T Consensus 155 ~la~sf~~Ygl~RK~~~v~------a~~g-~~lE~l~l~p~al~yl~~l~~~~~-----~~~----~~~~~~~~LLv~aG 218 (293)
T COG2962 155 ALALSFGLYGLLRKKLKVD------ALTG-LTLETLLLLPVALIYLLFLADSGQ-----FLQ----QNANSLWLLLVLAG 218 (293)
T ss_pred HHHHHHHHHHHHHHhcCCc------hHHh-HHHHHHHHhHHHHHHHHHHhcCch-----hhh----cCCchHHHHHHHhh
Confidence 3466788888888776654 3333 5555555 4456555544332110 000 00111222223333
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcc
Q 015564 127 FLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL 191 (404)
Q Consensus 127 ~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~ 191 (404)
..-++--.++-.|-+.+|.++.-++....|...-+++++++||.++.-|+.+-++.-+|+++...
T Consensus 219 ~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 219 LVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI 283 (293)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33444445656678889999999999999999999999999999999999999999999888754
No 87
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=94.33 E-value=0.11 Score=43.72 Aligned_cols=66 Identities=17% Similarity=0.316 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Q 015564 281 MLLIFNNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQ 346 (404)
Q Consensus 281 ~~~i~~~a~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~l 346 (404)
+...+.+..|.+.-.+.+..+| ++....+++++.++|.+.++++.+|..+...++|+.+|+.|+.+
T Consensus 45 ~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 45 IIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 3344445456655556666676 44445667899999999999999888899999999999999764
No 88
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.30 E-value=0.32 Score=45.82 Aligned_cols=69 Identities=14% Similarity=0.272 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 015564 120 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISV 188 (404)
Q Consensus 120 ~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~l 188 (404)
|-+...|+.-.+...+.|....+..|-+-++...+.-+||.+.|+++++..++.+||++-++.+.|...
T Consensus 242 ~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 242 WDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 445667777788889999999999999999999999999999999999999999999999999998765
No 89
>PRK13499 rhamnose-proton symporter; Provisional
Probab=94.30 E-value=0.76 Score=46.10 Aligned_cols=136 Identities=15% Similarity=0.102 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHH--
Q 015564 207 MGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLI-- 284 (404)
Q Consensus 207 ~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i-- 284 (404)
..|++..+++++|+|--++-++| .|+- + | +++|. ..+....++..+....+.-+...+.++..+...+...
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~w---~-w-E~~W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKKW---S-W-ETMWS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCCC---c-h-hHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 45889999999998876766655 4432 1 2 22233 2232211111110011111111122333444433322
Q ss_pred --HHHHHHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHHHhCCCc---c----HHHHHHHHHHHHHHHHhcc
Q 015564 285 --FNNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTL---T----MNFLLGISIVFISMHQFFS 349 (404)
Q Consensus 285 --~~~a~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~llfge~l---t----~~~~lG~~lVi~gv~ly~~ 349 (404)
+.-++|++.....+||.+ +..-...+.++.+++++++.+++||-. + ...++|.+++++|+.+-..
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 234678888888999987 344456677888999999999998643 2 3468899999999887665
No 90
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=93.91 E-value=0.44 Score=45.51 Aligned_cols=67 Identities=22% Similarity=0.196 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccccc
Q 015564 287 NAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSK 353 (404)
Q Consensus 287 ~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~ 353 (404)
-++...+....+++.|+.+-.......+++|+++++++++.+++..+|++..+...|+.+.......
T Consensus 27 Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 27 YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 3455666677889999888777777899999999999999999999999999999999887664433
No 91
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.84 E-value=0.65 Score=45.39 Aligned_cols=134 Identities=18% Similarity=0.225 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhh-h
Q 015564 41 LNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARN-N 119 (404)
Q Consensus 41 l~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~ 119 (404)
+.+.-+..+.+....|.-+-+ ++.-++....+-.++...+.+..-++-++.. .+-. .|...-++ .
T Consensus 176 Ll~~~L~fDgfTn~tQd~lf~------~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~-----~~av---~F~~~hp~~~ 241 (327)
T KOG1581|consen 176 LLFGYLLFDGFTNATQDSLFK------KYKVSSLHMMFGVNLFSAILNGTYLILQGHL-----LPAV---SFIKEHPDVA 241 (327)
T ss_pred HHHHHHHHHhhHHhHHHHHhc------cCCccHhHHHHHHHHHHHHHHHHhhhcCCCC-----chHH---HHHHcChhHH
Confidence 333444445555666654443 3456677788889999988887765433221 1111 12211111 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 015564 120 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISV 188 (404)
Q Consensus 120 ~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~l 188 (404)
+-+.+-+.+-++..++.|+-++...+-++.++.-++=+++.++|.+..+++++..||.++.+.+.|+.+
T Consensus 242 ~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 242 FDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 235556677778888889999999999999999999999999999999999999999999998888766
No 92
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=91.79 E-value=0.039 Score=52.20 Aligned_cols=130 Identities=15% Similarity=0.288 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHH
Q 015564 44 FLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLA 123 (404)
Q Consensus 44 ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 123 (404)
++-..-.+.++++|... .|.+|+ ++..+ .=+-+-.+++++.+++.. + |...... ...-.
T Consensus 5 liaL~P~l~WGsip~v~--~k~GG~-p~qQ~---lGtT~GALifaiiv~~~~-~-------p~~T~~~-------~iv~~ 63 (288)
T COG4975 5 LIALLPALGWGSIPLVA--NKFGGK-PYQQT---LGTTLGALIFAIIVFLFV-S-------PELTLTI-------FIVGF 63 (288)
T ss_pred HHHHHHHHHhcccceee--eecCCC-hhHhh---hhccHHHHHHHHHHheee-c-------Cccchhh-------HHHHH
Confidence 33344566788888554 454443 33332 345556677777665541 1 1111111 11334
Q ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHHhhccCCC
Q 015564 124 VPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQW----EALALLLIGISVNQLRSL 194 (404)
Q Consensus 124 vpA~ly~~~n~L~f~al~~l~~~t~~vl-~q~k~l~tal~s~l~L~ekls~~qw----lal~Ll~~Gv~lv~~~~~ 194 (404)
+-+++..+....+|-|.+++..+.+.=+ ..++++-+.+++++.++|--+..|. .|++++.+|+.+..+++.
T Consensus 64 isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 64 ISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred HhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 4567888889999999999887766544 5578899999999999999998885 588899999988877654
No 93
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.58 E-value=12 Score=33.13 Aligned_cols=133 Identities=14% Similarity=0.147 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHHHH
Q 015564 209 AYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNA 288 (404)
Q Consensus 209 G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i~~~a 288 (404)
..+..+.+..+..+.+..+-++.+.- + ++..-...-+..|++......+ ..++..........+||.|.- ..
T Consensus 6 ~ll~~i~aG~~l~~Q~~iN~qL~~~~-~-spl~As~isf~vGt~~L~~l~l---~~~~~~~~a~~~~~pwW~~~G---G~ 77 (150)
T COG3238 6 YLLFAILAGALLPLQAAINGRLARYL-G-SPLLASLISFLVGTVLLLILLL---IKQGHPGLAAVASAPWWAWIG---GL 77 (150)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHc-C-ChHHHHHHHHHHHHHHHHHHHH---HhcCCCchhhccCCchHHHHc---cc
Confidence 34555666667777777787777654 2 3322222222334433222221 223332222223445555542 12
Q ss_pred HHHHHHHHHHH----HhhhHHHHHHHhhHHHHHHHHHHH-HhC---CCccHHHHHHHHHHHHHHHHhcc
Q 015564 289 AQGILSCFFLK----YADAILKKYSSTVATIFTGIASAV-LFG---HTLTMNFLLGISIVFISMHQFFS 349 (404)
Q Consensus 289 ~ggl~vs~v~k----ya~~i~k~~a~~~~iv~s~lls~l-lfg---e~lt~~~~lG~~lVi~gv~ly~~ 349 (404)
+|.+++..-+. ...........+.+++.+.++.-+ +|| .+++..-++|+++++.|+++...
T Consensus 78 lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 78 LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 33343333332 222333344445566666666655 443 57999999999999999776554
No 94
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.52 E-value=0.23 Score=48.78 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Q 015564 278 KATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMH 345 (404)
Q Consensus 278 ~~~~~~i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ 345 (404)
+..|.-++..++|-+.....|-++++++.+...+++++.+++++..+++|.+++.-.+|.++.+.|..
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst 132 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGST 132 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccE
Confidence 45567788888898888888999999999999999999999999999999999999999999999854
No 95
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=86.65 E-value=15 Score=36.70 Aligned_cols=136 Identities=13% Similarity=0.139 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHH-
Q 015564 207 MGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFL--YGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLL- 283 (404)
Q Consensus 207 ~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l--~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~- 283 (404)
..|++...++++++|..++=.+|+ |+ --.+++|+ .+++.++ +|.+.. ...-|+..+.+...+..++..
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv-k~-----WsWEs~Wlv~gi~swli-~P~~~a--~l~ip~~~~i~~~~~~~~l~~~ 76 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV-KG-----WSWESYWLVQGIFSWLI-VPWLWA--LLAIPDFFSIYSATPASTLFWT 76 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc-CC-----ccHHHHHHHHHHHHHHH-HHHHHH--HHhCCcHHHHHHhCChhHHHHH
Confidence 458888888888888777766664 22 11233332 2334333 222211 122222222333343333222
Q ss_pred H---HHHHHHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHHHhC-------CCccHHHHHHHHHHHHHHHHhcccc
Q 015564 284 I---FNNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFG-------HTLTMNFLLGISIVFISMHQFFSSL 351 (404)
Q Consensus 284 i---~~~a~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~llfg-------e~lt~~~~lG~~lVi~gv~ly~~~~ 351 (404)
. ++-++||+.-+..+||.+ +.--+.+..+..++.+++--++.| .+-....++|.+++++|+.+..+.-
T Consensus 77 ~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG 155 (344)
T PF06379_consen 77 FLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG 155 (344)
T ss_pred HHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence 2 344679999999999987 333344444455666666555433 2234477999999999988877643
No 96
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=84.24 E-value=0.73 Score=44.35 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=45.3
Q ss_pred HHHHHHHHH---hhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccc
Q 015564 292 ILSCFFLKY---ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSL 351 (404)
Q Consensus 292 l~vs~v~ky---a~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~ 351 (404)
..+.+.+.| +|+++..| .++++++++++++++|+.|..-.+|..+-+.|+.+-.+|+
T Consensus 112 mlmyya~~~mslaDA~vItF---ssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 112 MLMYYALMYMSLADAVVITF---SSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred HHHHHHHhhcchhheEEEEe---cChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 344555555 45554444 7899999999999999999999999999999987766654
No 97
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=83.23 E-value=3.1 Score=34.40 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccChHHH-HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 015564 119 NVLLAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISV 188 (404)
Q Consensus 119 ~~~~~vpA~ly~~~n~L~f~al~~l~~~t~-~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~l 188 (404)
+|.|.+|-+++--...++|.-+++.|.+.+ -+.+++...+|+++...+-.|....+-.++..+..+|+.+
T Consensus 52 ~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 52 NWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 367999999999999999999999887654 5778889999999999876666666677777777777654
No 98
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=78.53 E-value=43 Score=28.92 Aligned_cols=63 Identities=16% Similarity=0.290 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHhh-HHHHHHHHHHH----HhCCCCCHHHHHHHHHHHHHHHh
Q 015564 123 AVPAFLYAINNYLKFIMQLYFNPATVKMLSNL-KVLVIAVLLKI----IMRRRFSIIQWEALALLLIGISV 188 (404)
Q Consensus 123 ~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~-k~l~tal~s~l----~L~ekls~~qwlal~Ll~~Gv~l 188 (404)
++.+..|. .+..+....+.++...++.=+ +++...++-.+ .-|++++++|.+++.+..+|+.+
T Consensus 71 G~lG~~~V---~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 71 GLLGVFFV---LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHH---HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 34444444 444556677887777665444 44555555554 46799999999999999999863
No 99
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=77.02 E-value=17 Score=34.42 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 015564 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISV 188 (404)
Q Consensus 121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~l 188 (404)
.+.+.+++-+.-.++.=+.++-++..++++...+.-...++-..+++++..+.....+++++++..++
T Consensus 226 am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~i 293 (309)
T COG5070 226 AMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAI 293 (309)
T ss_pred HHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 35566666666677777778889999999999999999999999999999999999998888776554
No 100
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=75.57 E-value=0.72 Score=43.87 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHH
Q 015564 78 FLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVL 157 (404)
Q Consensus 78 ~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l 157 (404)
++=..+.++++...+-..+. +++. .+..++-.+|++...+.|...++|-+....+|.--++|+..+
T Consensus 182 iLPqAiGMv~~ali~~~~~~-----~~~~---------~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgVi 247 (288)
T COG4975 182 ILPQAIGMVIGALILGFFKM-----EKRF---------NKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVI 247 (288)
T ss_pred hhHHHHHHHHHHHHHhhccc-----ccch---------HHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheee
Confidence 45556677777665543331 1111 123456689999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHH
Q 015564 158 VIAVLLKIIMRRRFSIIQWEALA 180 (404)
Q Consensus 158 ~tal~s~l~L~ekls~~qwlal~ 180 (404)
...+=..++||||=++++|..+.
T Consensus 248 isTiGGIl~L~ekKtkkEm~~v~ 270 (288)
T COG4975 248 ISTIGGILFLGEKKTKKEMVYVI 270 (288)
T ss_pred eeecceEEEEeccCchhhhhhhh
Confidence 99999999999999999987654
No 101
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=74.58 E-value=5.8 Score=32.77 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=32.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Q 015564 305 LKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQ 346 (404)
Q Consensus 305 ~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~l 346 (404)
+|..-...+...=+.+++++++|+++++++.|.+++++++|.
T Consensus 64 LKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 64 LKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 344444455555566778899999999999999999998764
No 102
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.15 E-value=20 Score=35.45 Aligned_cols=71 Identities=10% Similarity=0.096 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcc
Q 015564 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL 191 (404)
Q Consensus 121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~ 191 (404)
.+.+-.++-.+-|++.+...+..++.|+.+..-...+.|++-..++.+++.++....++.+.++|-++-++
T Consensus 230 ~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 230 VMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY 300 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence 34445566668889999999999999999999777888888888888899999999999888888776544
No 103
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=73.59 E-value=4.4 Score=33.51 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564 282 LLIFNNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF 347 (404)
Q Consensus 282 ~~i~~~a~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly 347 (404)
...+.+-.|..+-.+.+.+++ +....+.++++..|+++.+..+-.|......++|+.+++.|+++.
T Consensus 57 iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 57 IPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 333334344444334445555 333356778899999999999988888889999999999998764
No 104
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=67.75 E-value=97 Score=31.58 Aligned_cols=68 Identities=15% Similarity=0.134 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCC
Q 015564 127 FLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSL 194 (404)
Q Consensus 127 ~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~ 194 (404)
+.-++..+|.-.|.-..++-+..+-..+.++..++.=.++-++++|+.++++-+..++|-+++.+++.
T Consensus 326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred HHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 44557888888899999999999999999999999888888999999999999999999999877654
No 105
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.85 E-value=8.2 Score=37.49 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHH
Q 015564 78 FLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVL 157 (404)
Q Consensus 78 ~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l 157 (404)
...++..++..+.++...+.-++.-..|.++..+||. .+.+-+++-+.-|+..+.=++..+|-|+++-...|-.
T Consensus 220 ~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~------~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~ 293 (347)
T KOG1442|consen 220 AYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWI------LMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAA 293 (347)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHH------HHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHH
Confidence 6678888887777766554433332334443334443 3444555555555555666778899999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 015564 158 VIAVLLKIIMRRRFSIIQWEALALLLIGISV 188 (404)
Q Consensus 158 ~tal~s~l~L~ekls~~qwlal~Ll~~Gv~l 188 (404)
.=.++++.+++|..+...|-+-++...|-..
T Consensus 294 aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~ 324 (347)
T KOG1442|consen 294 AQTVLAVAYYSETKSGLWWTSNIVVLVGSLA 324 (347)
T ss_pred HHHHHHHHHHHHHhhhheeeeeEEEEehhHH
Confidence 9999999999999999999887665555433
No 106
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=58.31 E-value=1.9e+02 Score=28.44 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564 312 VATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF 347 (404)
Q Consensus 312 ~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly 347 (404)
..++|+.++|..+++.+++..+|+|+..|.+|....
T Consensus 121 aviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviV 156 (372)
T KOG3912|consen 121 AVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIV 156 (372)
T ss_pred chhhhhHHHHHHHHhcccchhhHHHHHHHHhhhhee
Confidence 457899999999999999999999999999997643
No 107
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=57.96 E-value=3.1e+02 Score=30.71 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=33.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 015564 146 ATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN 189 (404)
Q Consensus 146 ~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv 189 (404)
+-+.++..+.|+-.|.++...+.+|.+..-|.+.+-+++|.+.+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 44567888899999999999888776555677777777776654
No 108
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=57.82 E-value=2.3e+02 Score=29.20 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=17.8
Q ss_pred ccchhhhhcccccchhhcccCCcCCCCCC
Q 015564 373 RSKESFIDIAAGANEEAAHRIGSDERQPL 401 (404)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (404)
+++|+|- +.++.|||+|.--|.|..|.
T Consensus 448 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 474 (476)
T PLN00028 448 AVEEDYY--ASEWTEEEKEKGLHQGSLKF 474 (476)
T ss_pred cchhhhh--hcccchhhhhcccccccccc
Confidence 4555543 46778888887767766653
No 109
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=57.07 E-value=28 Score=28.79 Aligned_cols=33 Identities=12% Similarity=0.053 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 015564 156 VLVIAVLLKIIMRRRFSIIQWEALALLLIGISV 188 (404)
Q Consensus 156 ~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~l 188 (404)
+..-++++++++||++++.+..|-+++..+|..
T Consensus 73 L~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 73 LVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred hheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 345578999999999999999999888777643
No 110
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=56.36 E-value=3.7 Score=39.79 Aligned_cols=96 Identities=16% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHhccChHHHHHHHhhHHHHHHHH-HHHHhCCCC-CHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccchHHHHHHH
Q 015564 137 FIMQLYFNPATVKMLSNLKVLVIAVL-LKIIMRRRF-SIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTL 214 (404)
Q Consensus 137 f~al~~l~~~t~~vl~q~k~l~tal~-s~l~L~ekl-s~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~~~~~~~~G~ll~L 214 (404)
|+-++-++-+...++++..++.+.++ -.+++|||+ -+.-.+|++++++-..+..+-... + ..-+.|+++.+
T Consensus 41 ~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLt------G-Q~LF~Gi~~l~ 113 (381)
T PF05297_consen 41 FIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLT------G-QTLFVGIVILF 113 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhh------c-cHHHHHHHHHH
Confidence 55666666667777777766554444 344455554 566677777777665554332211 1 11234666666
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcchHH
Q 015564 215 IFITVPSMASVFNEYALKSQYDTSIYL 241 (404)
Q Consensus 215 ~a~~~sala~Vy~ekllk~~~~~s~~~ 241 (404)
+++++.=.-..|.+ +++++ ..++|.
T Consensus 114 l~~lLaL~vW~Ym~-lLr~~-GAs~Wt 138 (381)
T PF05297_consen 114 LCCLLALGVWFYMW-LLREL-GASFWT 138 (381)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHH-HHHHh-hhHHHH
Confidence 66555544455654 45544 457764
No 111
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=55.98 E-value=57 Score=31.91 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=87.1
Q ss_pred hhhccCCcccchhhHHHHHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 015564 25 RAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEK 104 (404)
Q Consensus 25 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~ 104 (404)
.+-|.+.......|-.+.+-++.-+.+.-+.|++-.+..++. |--++-+..|.+-++.+-.-+++. +.
T Consensus 148 ~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~k--yGKh~~EalFytH~LsLP~Flf~~--~d-------- 215 (330)
T KOG1583|consen 148 SGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQK--YGKHWKEALFYTHFLSLPLFLFMG--DD-------- 215 (330)
T ss_pred cccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHhccchHHHhc--ch--------
Confidence 344444444555555555444444444455577665533321 112356778888888776544431 10
Q ss_pred CcchHHHHHHHhhh------hhHHHHHH-HHHHHHHHHH-HHHHhc-------cChHHHHHHHhhHHHHHHHHHHHHhCC
Q 015564 105 PLLSISTFIQAARN------NVLLAVPA-FLYAINNYLK-FIMQLY-------FNPATVKMLSNLKVLVIAVLLKIIMRR 169 (404)
Q Consensus 105 ~~~~~~~~~~~~r~------~~~~~vpA-~ly~~~n~L~-f~al~~-------l~~~t~~vl~q~k~l~tal~s~l~L~e 169 (404)
..+ .+....++ .....+|. ..|.+.|.+. |...+. .+.-|.++...++=.+.-++|...++.
T Consensus 216 -iv~--~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~N 292 (330)
T KOG1583|consen 216 -IVS--HWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFEN 292 (330)
T ss_pred -HHH--HHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecC
Confidence 000 00000000 11223565 4677666654 333443 234445555667778889999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhc
Q 015564 170 RFSIIQWEALALLLIGISVNQ 190 (404)
Q Consensus 170 kls~~qwlal~Ll~~Gv~lv~ 190 (404)
.++++.|++..+.+.|..+..
T Consensus 293 pft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 293 PFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988864
No 112
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.40 E-value=1.2e+02 Score=24.96 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=33.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015564 305 LKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF 348 (404)
Q Consensus 305 ~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~ 348 (404)
+|..-...+..+=..+|++.++|++.+.++.|.+++.+|++.-.
T Consensus 71 LK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 71 LKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 34433334445556789999999999999999999999987643
No 113
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=54.12 E-value=2e+02 Score=28.20 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=43.4
Q ss_pred cChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCC
Q 015564 143 FNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS 193 (404)
Q Consensus 143 l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~ 193 (404)
..+++.....-.+=..|.++|++++.+.++....-+..+.+.|+.+...+.
T Consensus 284 fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 284 FGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 466666666777778889999999999999999999999999999877654
No 114
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.59 E-value=1.3e+02 Score=24.68 Aligned_cols=32 Identities=9% Similarity=0.053 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 015564 158 VIAVLLKIIMRRRFSIIQWEALALLLIGISVN 189 (404)
Q Consensus 158 ~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv 189 (404)
.-+.||++.|||.+++.+|.|-.++..|+..+
T Consensus 82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 44568999999999999999998888887664
No 115
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=48.95 E-value=56 Score=32.36 Aligned_cols=73 Identities=22% Similarity=0.388 Sum_probs=63.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 015564 117 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN 189 (404)
Q Consensus 117 r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv 189 (404)
|.....+.++++-++--..-|.-+...+.-|.++..-.|-+.|-+++..++++++|...|+++.+...|+..-
T Consensus 241 rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 241 RVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 4344566677766666777788888899999999999999999999999999999999999999999999886
No 116
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=41.64 E-value=3.5e+02 Score=26.53 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=18.1
Q ss_pred HhhHHHHHHHHHHHHhCCCccHHHHHHH
Q 015564 310 STVATIFTGIASAVLFGHTLTMNFLLGI 337 (404)
Q Consensus 310 ~~~~iv~s~lls~llfge~lt~~~~lG~ 337 (404)
.+..-.+..+.+....+-+++.+.++..
T Consensus 146 va~~~~lr~~~G~~a~~~~~s~wll~~~ 173 (295)
T PRK12324 146 IASGFVLRAIAGGVAIGVPLSPWLLLCT 173 (295)
T ss_pred HHHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 3344455667777788888887776544
No 117
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=40.28 E-value=32 Score=25.99 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhccccccc
Q 015564 332 NFLLGISIVFISMHQFFSSLSKA 354 (404)
Q Consensus 332 ~~~lG~~lVi~gv~ly~~~~~~~ 354 (404)
..++++++++.|..+|.-+.+++
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 46788999999988887764443
No 118
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=39.50 E-value=2.2e+02 Score=29.05 Aligned_cols=77 Identities=17% Similarity=0.125 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCCCCHH-------HHHHHHHHHHHHHhh--ccCCCCCCCCCCCCccchH-HHHHHHHHHHHHHHHHHH
Q 015564 157 LVIAVLLKIIMRRRFSII-------QWEALALLLIGISVN--QLRSLPEGSTAMGLPVAMG-AYIYTLIFITVPSMASVF 226 (404)
Q Consensus 157 l~tal~s~l~L~ekls~~-------qwlal~Ll~~Gv~lv--~~~~~~~~~~~~~~~~~~~-G~ll~L~a~~~sala~Vy 226 (404)
=..++....++++|..+. .--...+.++|..+. .+.+...++.....+.... ...-..+++..+++....
T Consensus 161 G~~gL~~a~~lg~R~~~~~~~~~~~~~~s~~~~~lG~~lLw~gW~gFN~gs~~~~~~~~~~~~~~nT~la~a~g~l~~~~ 240 (399)
T PF00909_consen 161 GVFGLAAAIVLGPRRGRFDGKPNPIPPHSPPLAMLGTLLLWFGWFGFNAGSALAANGRAWLRAAVNTLLAAAAGGLTWLL 240 (399)
T ss_dssp HHHHHHHHHHH--CTTTTGTTTSS--HCHHHHHHHHHHHHHHHHHHHHHCCGSSSSHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhheeeCCCCCcccccccCCCCCcHHHhhhhHHHHHHHhcccccccccccCCccchhhhhhhhhhHHHHHHHHHH
Confidence 356777788888888764 333344444444332 1111111110000011111 234456666777788888
Q ss_pred HHHHhhh
Q 015564 227 NEYALKS 233 (404)
Q Consensus 227 ~ekllk~ 233 (404)
.+++.++
T Consensus 241 ~~~~~~g 247 (399)
T PF00909_consen 241 ISYLLSG 247 (399)
T ss_dssp HHHHHCS
T ss_pred hhhcccc
Confidence 8887754
No 119
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=38.79 E-value=3.4e+02 Score=28.02 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCCC----HHHHHHHHHHHHHHHh--hccCCCCCCCCCCCCc-cchHHHHHHHHHHHHHHHHHHHHHHH
Q 015564 158 VIAVLLKIIMRRRFS----IIQWEALALLLIGISV--NQLRSLPEGSTAMGLP-VAMGAYIYTLIFITVPSMASVFNEYA 230 (404)
Q Consensus 158 ~tal~s~l~L~ekls----~~qwlal~Ll~~Gv~l--v~~~~~~~~~~~~~~~-~~~~G~ll~L~a~~~sala~Vy~ekl 230 (404)
+.++...++|++|.. ..+=--+.+.++|..+ +..-++..++.. +.. ......+-..+++...+++....|++
T Consensus 172 ~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal-~~~~~a~~a~~nT~lAaa~g~l~w~~~e~~ 250 (409)
T COG0004 172 FAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSAL-AANGVAALAFVNTNLAAAAGALGWMLIEWL 250 (409)
T ss_pred HHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccchh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999998874 2222233344444443 333343333211 111 11123334455666777888889998
Q ss_pred hhhc
Q 015564 231 LKSQ 234 (404)
Q Consensus 231 lk~~ 234 (404)
.+++
T Consensus 251 ~~~K 254 (409)
T COG0004 251 RNGK 254 (409)
T ss_pred HcCC
Confidence 8553
No 120
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=38.02 E-value=2.4e+02 Score=23.49 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=36.1
Q ss_pred hhHHHHHHHhhH--HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Q 015564 302 DAILKKYSSTVA--TIFTGIASAVLFGHTLTMNFLLGISIVFISMHQ 346 (404)
Q Consensus 302 ~~i~k~~a~~~~--iv~s~lls~llfge~lt~~~~lG~~lVi~gv~l 346 (404)
++--+.++.+-. ++.|.+..+.+-|++|+.+-++|.++++.|+.+
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~i 100 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAI 100 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHh
Confidence 455566777755 466777888899999999999999999998654
No 121
>PRK14778 lipoprotein signal peptidase; Provisional
Probab=37.00 E-value=3.3e+02 Score=24.90 Aligned_cols=17 Identities=6% Similarity=0.372 Sum_probs=10.1
Q ss_pred cHHHHHHHHHHHHHHHH
Q 015564 330 TMNFLLGISIVFISMHQ 346 (404)
Q Consensus 330 t~~~~lG~~lVi~gv~l 346 (404)
+..-.+|+++++...+.
T Consensus 120 Di~I~iGv~llll~~~~ 136 (186)
T PRK14778 120 DVFIIVGGALMILGVFR 136 (186)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34456777766666543
No 122
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=33.33 E-value=4e+02 Score=27.63 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=12.0
Q ss_pred ccHHHHHHHHHHHHHH
Q 015564 329 LTMNFLLGISIVFISM 344 (404)
Q Consensus 329 lt~~~~lG~~lVi~gv 344 (404)
-+...++|.++.+.++
T Consensus 283 ~~~~~iig~i~~~~~v 298 (429)
T PF03348_consen 283 NTWQSIIGLIFTFVSV 298 (429)
T ss_pred chHHHHHHHHHHHHHH
Confidence 4566788988888775
No 123
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=27.28 E-value=22 Score=22.08 Aligned_cols=17 Identities=41% Similarity=0.640 Sum_probs=9.2
Q ss_pred eeeccccccccCCccch
Q 015564 7 ECSVCHSKLVSPTTKSI 23 (404)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (404)
+|.+|+++++-....+.
T Consensus 1 ~CP~C~s~l~~~~~ev~ 17 (28)
T PF03119_consen 1 TCPVCGSKLVREEGEVD 17 (28)
T ss_dssp B-TTT--BEEE-CCTTC
T ss_pred CcCCCCCEeEcCCCCEe
Confidence 59999999886555444
No 124
>PRK10263 DNA translocase FtsK; Provisional
Probab=26.29 E-value=1.2e+03 Score=28.06 Aligned_cols=10 Identities=20% Similarity=0.095 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 015564 315 IFTGIASAVL 324 (404)
Q Consensus 315 v~s~lls~ll 324 (404)
++.++++..+
T Consensus 168 LlllLIGLiL 177 (1355)
T PRK10263 168 LCVWAAGLTL 177 (1355)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 125
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=25.58 E-value=7.5e+02 Score=25.43 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhh--ccCCCCCCCCCCCCc-cchHHHHHHHHHHHHHHHHHHHHH
Q 015564 158 VIAVLLKIIMRRRFSII------QWEALALLLIGISVN--QLRSLPEGSTAMGLP-VAMGAYIYTLIFITVPSMASVFNE 228 (404)
Q Consensus 158 ~tal~s~l~L~ekls~~------qwlal~Ll~~Gv~lv--~~~~~~~~~~~~~~~-~~~~G~ll~L~a~~~sala~Vy~e 228 (404)
.+++...++|++|..+. +--.+.+.++|..+. .+.++..++.. ..+ ......+=+.+++..++++....+
T Consensus 169 ~~~L~~a~~LGpR~~r~~~~~~~~~~n~~~~~lGt~lLw~gW~gFN~Gs~~-~~~~~~~~a~~nT~lA~a~g~l~~~~~~ 247 (403)
T TIGR00836 169 VAGLAAALVLGPRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSAL-AANGTAAYAAVNTNLAAAAGGLTWLLID 247 (403)
T ss_pred HHHHHHHHHhcCCCCCCcCcCCCCCCCHHHHHHHHHHHHHHHhcccchhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777888766443 112344445554443 33333222211 111 111233344556666777777788
Q ss_pred HHhhh
Q 015564 229 YALKS 233 (404)
Q Consensus 229 kllk~ 233 (404)
++.++
T Consensus 248 ~~~~g 252 (403)
T TIGR00836 248 WLKHG 252 (403)
T ss_pred HHhcC
Confidence 76544
No 126
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.08 E-value=4.8e+02 Score=23.02 Aligned_cols=66 Identities=12% Similarity=0.180 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHH-HHHHhhHHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHHHHhhcc
Q 015564 123 AVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVLVIAVLLKIIM----RRRFSIIQWEALALLLIGISVNQL 191 (404)
Q Consensus 123 ~vpA~ly~~~n~L~f~al~~l~~~t~-~vl~q~k~l~tal~s~l~L----~ekls~~qwlal~Ll~~Gv~lv~~ 191 (404)
++.+..|...|.+. ...+-+++. .+...-+.+.-.++-.+=+ +|+++..+++++++..+|+.+++.
T Consensus 76 G~lGa~~vt~s~~l---~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 76 GLLGAIFVTSSILL---APRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred cchhhhhhhhhHHh---ccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 34556666666553 344444444 3444555555555555444 499999999999999999766654
No 127
>PF05077 DUF678: Protein of unknown function (DUF678); InterPro: IPR007769 This family contains poxvirus proteins belonging to the A19 family. The proteins are of unknown function.
Probab=24.85 E-value=22 Score=27.30 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=16.1
Q ss_pred ceeeeccccccccCCc--cchhhhh
Q 015564 5 MIECSVCHSKLVSPTT--KSISRAY 27 (404)
Q Consensus 5 ~~~~~~~~~~~~~~~~--~~~~~~~ 27 (404)
-.-||.|+||++.-++ +.-...|
T Consensus 25 c~tCSsC~SkLV~~Sdvtk~sl~~~ 49 (74)
T PF05077_consen 25 CTTCSSCQSKLVKFSDVTKVSLDEY 49 (74)
T ss_pred ccchhhhhhheeeeecccceehhhh
Confidence 3679999999987765 4334444
No 128
>PRK02237 hypothetical protein; Provisional
Probab=24.57 E-value=4.2e+02 Score=22.12 Aligned_cols=43 Identities=14% Similarity=0.010 Sum_probs=34.2
Q ss_pred HHHHHHHhhHH--HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Q 015564 304 ILKKYSSTVAT--IFTGIASAVLFGHTLTMNFLLGISIVFISMHQ 346 (404)
Q Consensus 304 i~k~~a~~~~i--v~s~lls~llfge~lt~~~~lG~~lVi~gv~l 346 (404)
--+.++.+-.+ +.+.+..+.+.|.+||.+-++|.++++.|+.+
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~i 102 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAV 102 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHH
Confidence 45567776554 56667888899999999999999999998644
No 129
>PRK02237 hypothetical protein; Provisional
Probab=22.88 E-value=1.7e+02 Score=24.41 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564 154 LKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR 192 (404)
Q Consensus 154 ~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~ 192 (404)
.-++..-+..+.+=|.|.++..|.+..+..+|+.++...
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 334444578888899999999999999999999988654
No 130
>COG5319 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.66 E-value=29 Score=29.60 Aligned_cols=15 Identities=47% Similarity=0.959 Sum_probs=12.6
Q ss_pred CCceeeecccccccc
Q 015564 3 NGMIECSVCHSKLVS 17 (404)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (404)
.|-++|.+|||..++
T Consensus 30 rgLv~CPvCgs~~Vs 44 (142)
T COG5319 30 RGLVTCPVCGSTEVS 44 (142)
T ss_pred cCceeCCCCCcHHHH
Confidence 578999999997665
No 131
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=22.65 E-value=41 Score=21.91 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=9.8
Q ss_pred Cceeeeccccccc
Q 015564 4 GMIECSVCHSKLV 16 (404)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (404)
+.++|+.||....
T Consensus 24 ~~v~C~~C~~~~~ 36 (38)
T TIGR02098 24 GKVRCGKCGHVWY 36 (38)
T ss_pred CEEECCCCCCEEE
Confidence 4788999987653
No 132
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=21.28 E-value=36 Score=30.00 Aligned_cols=16 Identities=44% Similarity=0.897 Sum_probs=13.5
Q ss_pred CCCceeeecccccccc
Q 015564 2 KNGMIECSVCHSKLVS 17 (404)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (404)
++|+++|.+|++.-+.
T Consensus 29 ~~glv~CP~Cgs~~V~ 44 (148)
T PF06676_consen 29 ARGLVSCPVCGSTEVS 44 (148)
T ss_pred HcCCccCCCCCCCeEe
Confidence 4799999999997664
No 133
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=20.99 E-value=5.7e+02 Score=22.42 Aligned_cols=51 Identities=14% Similarity=0.242 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccccccccccCCCc
Q 015564 312 VATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQNGT 362 (404)
Q Consensus 312 ~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~~~~~~~~~~ 362 (404)
+..+.-...++++|--..+..++.|..+|..=....--|...+++.++.|+
T Consensus 79 lG~~vm~~~~~llw~ggv~~~~IAg~~lv~filmvVLiPEpg~QRS~~DN~ 129 (144)
T PF01350_consen 79 LGMLVMAVAGYLLWMGGVPPGQIAGVLLVFFILMVVLIPEPGKQRSQQDNQ 129 (144)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHhHHHHHHHHHHHHhcccCCCCcCCcccch
Confidence 344555566777777788889999999998876666665444444444444
No 134
>PF13347 MFS_2: MFS/sugar transport protein
Probab=20.77 E-value=6.6e+02 Score=25.16 Aligned_cols=20 Identities=25% Similarity=0.271 Sum_probs=9.6
Q ss_pred HHhCCCCCHHHHHHHHHHHH
Q 015564 165 IIMRRRFSIIQWEALALLLI 184 (404)
Q Consensus 165 l~L~ekls~~qwlal~Ll~~ 184 (404)
-.+.||+++++...+..+..
T Consensus 281 ~~l~~r~gk~~~~~~~~~~~ 300 (428)
T PF13347_consen 281 GRLSKRFGKKKVYIIGLLLA 300 (428)
T ss_pred HHHHHHccceeehhhhHHHH
Confidence 34445555555444443333
Done!