Query 015564
Match_columns 404
No_of_seqs 248 out of 1278
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 14:48:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.3 7.3E-06 2.5E-10 67.4 10.8 71 123-193 34-105 (110)
2 2i68_A Protein EMRE; transmemb 98.1 3.6E-06 1.2E-10 71.9 6.3 70 124-193 35-105 (137)
3 2i68_A Protein EMRE; transmemb 97.9 1.1E-05 3.7E-10 69.0 5.9 65 286-350 39-104 (137)
4 3b5d_A Multidrug transporter E 97.6 0.00038 1.3E-08 57.0 10.0 63 288-350 41-104 (110)
5 3b9w_A Ammonium transporter fa 83.6 6.2 0.00021 39.2 10.5 72 158-231 151-229 (407)
6 3u5e_g 60S ribosomal protein L 32.5 27 0.00093 28.5 2.7 40 5-44 41-93 (121)
7 3iz5_i 60S ribosomal protein L 20.2 44 0.0015 27.1 1.8 40 5-44 41-95 (119)
8 4a18_L RPL34; ribosome, eukary 18.8 61 0.0021 26.4 2.4 40 5-44 41-95 (123)
9 2b2h_A AMT-1, ammonium transpo 17.4 2.7E+02 0.0091 27.2 7.2 21 211-231 221-241 (399)
10 1rwj_A Cytochrome C family pro 13.6 51 0.0017 24.7 0.6 12 4-15 28-39 (82)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.25 E-value=7.3e-06 Score=67.37 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCC
Q 015564 123 AVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS 193 (404)
Q Consensus 123 ~vpA~ly~~~n~L~f~al~~l~~~t~~vl-~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~ 193 (404)
..-.++|.+...+...+++++|.+....+ ..+.|+.+++++++++||++++.||+++.+..+|+..+...+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44456888999999999999999999887 899999999999999999999999999999999999986643
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.11 E-value=3.6e-06 Score=71.95 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCC
Q 015564 124 VPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS 193 (404)
Q Consensus 124 vpA~ly~~~n~L~f~al~~l~~~t~~vl-~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~ 193 (404)
+-.++|.+...+.+.+++++|++....+ ..+.|+++++++++++||++++.||+++++.++|+.++...+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3456788999999999999999977777 899999999999999999999999999999999999987643
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.94 E-value=1.1e-05 Score=69.00 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHH-HHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564 286 NNAAQGILSCFFLKYADAILKKY-SSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (404)
Q Consensus 286 ~~a~ggl~vs~v~kya~~i~k~~-a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~ 350 (404)
..++.-.+....+|+.+...... .+.+.+++++++|+++|||++|+.+++|+++|+.|+++.+..
T Consensus 39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 33444456667778777554433 378999999999999999999999999999999999988764
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.61 E-value=0.00038 Score=56.97 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhhHHHH-HHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564 288 AAQGILSCFFLKYADAILKK-YSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (404)
Q Consensus 288 a~ggl~vs~v~kya~~i~k~-~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~ 350 (404)
++.-.+....+|+.|..... ....+.+++++++++++|||++|..+++|+++|+.|+.+.+..
T Consensus 41 ~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 33445566778887755443 3367899999999999999999999999999999999887664
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=83.65 E-value=6.2 Score=39.16 Aligned_cols=72 Identities=11% Similarity=0.023 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCCCH-----HHHHHHHHHHHHHHhh--ccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 015564 158 VIAVLLKIIMRRRFSI-----IQWEALALLLIGISVN--QLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYA 230 (404)
Q Consensus 158 ~tal~s~l~L~ekls~-----~qwlal~Ll~~Gv~lv--~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekl 230 (404)
..++...++|+||... .+--.+.+.++|..+. .+.+...+. ..+ .......+=+.+++..++++....+++
T Consensus 151 ~~aLa~a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~Gl-~~~-~~~~~a~~NT~lAaaag~l~~~~~~~~ 228 (407)
T 3b9w_A 151 YFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATAI-VPF-EQMPQTIVNTLLALCGATLATYFLSAL 228 (407)
T ss_dssp HHHHHHHHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTT-SCG-GGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhhh-ccc-hhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5677778888876422 1233455555665543 222211110 000 011112333445556666776667766
Q ss_pred h
Q 015564 231 L 231 (404)
Q Consensus 231 l 231 (404)
.
T Consensus 229 ~ 229 (407)
T 3b9w_A 229 F 229 (407)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=32.46 E-value=27 Score=28.46 Aligned_cols=40 Identities=30% Similarity=0.538 Sum_probs=27.6
Q ss_pred ceeeeccccccccCC-------------ccchhhhhccCCcccchhhHHHHHH
Q 015564 5 MIECSVCHSKLVSPT-------------TKSISRAYDRHKTRVSSKQRVLNVF 44 (404)
Q Consensus 5 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~k~~~l~~l 44 (404)
.--|.+|+.++.--. .++++|||-+..+..-.+.+-+-.+
T Consensus 41 ~pkCg~Cg~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr~RI~rAF 93 (121)
T 3u5e_g 41 RPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERIIRAF 93 (121)
T ss_dssp CCBCTTTCCBCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCccCCcHHHHHhcccCCCCcccCCcccchHHHHHHHHHHHH
Confidence 345999998875422 2588999998888876666544333
No 7
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=20.16 E-value=44 Score=27.15 Aligned_cols=40 Identities=18% Similarity=0.401 Sum_probs=27.5
Q ss_pred ceeeeccccccccCC---------------ccchhhhhccCCcccchhhHHHHHH
Q 015564 5 MIECSVCHSKLVSPT---------------TKSISRAYDRHKTRVSSKQRVLNVF 44 (404)
Q Consensus 5 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~k~~~l~~l 44 (404)
.--|.+|+.++.--+ .++++|||-+..+..=.+.+-+-.+
T Consensus 41 ~pkC~~cg~~L~GI~~~Rp~e~~~~rlsK~~KtvsRaYGG~lC~~CVr~rI~rAF 95 (119)
T 3iz5_i 41 GPKCPVTGKKIQGIPHLRPTEYKRPRLSRNRRTVNRPYGGVLSGPAVRERIIRAF 95 (119)
T ss_dssp CCCSTTSSCCSSSCCSSCSSTTCCCCCCSCCCCCBCCSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCccCCCchhhhhhhccccCCCcccCCCccchHHHHHHHHHHHH
Confidence 345999988765311 3588999999888777776654433
No 8
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Probab=18.81 E-value=61 Score=26.41 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=26.6
Q ss_pred ceeeeccc--cccccCC-------------ccchhhhhccCCcccchhhHHHHHH
Q 015564 5 MIECSVCH--SKLVSPT-------------TKSISRAYDRHKTRVSSKQRVLNVF 44 (404)
Q Consensus 5 ~~~~~~~~--~~~~~~~-------------~~~~~~~~~~~~~~~~~k~~~l~~l 44 (404)
.--|.+|+ .++.--+ .++++|||-+..+.--.+.+-+-.+
T Consensus 41 ~pkCg~cg~~~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr~RI~rAF 95 (123)
T 4a18_L 41 YTKCSEAGCNVALNGIAQVRPAEYATIARSAKTVSRVYGGELCHTCVRSRIIRAF 95 (123)
T ss_dssp CCBCCSTTTCCBCSSSCCCCTTGGGTSCHHHHCCSSTTSSSCCHHHHHHHHHHHH
T ss_pred CCcCCCCCCccccCCcCCCcHHHHHhccccCCCcccCCCccchHHHHHHHHHHHH
Confidence 34599999 6553211 2589999999888776666544433
No 9
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=17.44 E-value=2.7e+02 Score=27.24 Aligned_cols=21 Identities=10% Similarity=-0.002 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 015564 211 IYTLIFITVPSMASVFNEYAL 231 (404)
Q Consensus 211 ll~L~a~~~sala~Vy~ekll 231 (404)
+=+.+++..++++....|++.
T Consensus 221 ~nT~lAaaag~l~~~~~~~~~ 241 (399)
T 2b2h_A 221 VVTNTSAAVAGFVWMVIGWIK 241 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334555566677777778776
No 10
>1rwj_A Cytochrome C family protein; multiheme cytochrome C, geobacter metallireducens, heme coordination in C-type cytochromes; HET: HEM; 1.70A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=13.60 E-value=51 Score=24.72 Aligned_cols=12 Identities=58% Similarity=1.334 Sum_probs=9.8
Q ss_pred Cceeeecccccc
Q 015564 4 GMIECSVCHSKL 15 (404)
Q Consensus 4 ~~~~~~~~~~~~ 15 (404)
.+.+|++||.++
T Consensus 28 ~~~~C~~CH~~~ 39 (82)
T 1rwj_A 28 GMYKCNECHTKL 39 (82)
T ss_dssp TTCCGGGTBTTT
T ss_pred CCCChhhccccc
Confidence 346999999986
Done!