Query 015564
Match_columns 404
No_of_seqs 248 out of 1278
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 14:48:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015564.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015564hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dlqa4 g.37.1.1 (A:8-34) GLI- 48.2 2.3 0.00017 23.2 0.5 10 6-15 1-10 (27)
2 d1x61a2 g.39.1.3 (A:35-66) Thy 30.5 6.3 0.00046 22.5 0.4 13 8-20 2-14 (32)
3 d1rutx4 g.39.1.3 (X:114-146) L 20.7 13 0.00097 21.2 0.6 14 7-21 1-14 (33)
4 d1rwja_ a.138.1.1 (A:) Cytochr 19.4 17 0.0013 25.7 1.1 16 4-19 28-43 (81)
5 d1pbya1 a.3.1.7 (A:1-85) Quino 14.6 27 0.002 24.6 1.2 9 7-15 10-18 (85)
6 d1jmxa1 a.3.1.7 (A:2-85) Quino 12.7 21 0.0016 25.2 0.1 9 7-15 10-18 (84)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 12.3 2.9E+02 0.021 22.9 7.7 62 121-186 4-65 (248)
8 d1kx7a_ a.3.1.1 (A:) Mono-heme 12.0 60 0.0044 21.7 2.5 20 7-26 13-32 (81)
9 d1t2ya_ g.46.1.1 (A:) Metallot 11.6 27 0.0019 18.5 0.3 9 6-14 17-25 (26)
10 d1nmla1 a.3.1.5 (A:1-166) Di-h 11.6 35 0.0025 27.2 1.1 29 2-30 45-74 (166)
No 1
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=48.25 E-value=2.3 Score=23.24 Aligned_cols=10 Identities=50% Similarity=1.378 Sum_probs=8.1
Q ss_pred eeeecccccc
Q 015564 6 IECSVCHSKL 15 (404)
Q Consensus 6 ~~~~~~~~~~ 15 (404)
++|+.||.+.
T Consensus 1 vqcp~c~k~f 10 (27)
T d2dlqa4 1 VECPTCHKKF 10 (27)
T ss_dssp CCCTTTCCCC
T ss_pred CcCcchHHHH
Confidence 5899999764
No 2
>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.49 E-value=6.3 Score=22.51 Aligned_cols=13 Identities=31% Similarity=0.721 Sum_probs=10.2
Q ss_pred eeccccccccCCc
Q 015564 8 CSVCHSKLVSPTT 20 (404)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (404)
|.+||+|+--.+=
T Consensus 2 C~tC~~kLRGqpF 14 (32)
T d1x61a2 2 CSTCRAQLRGQHF 14 (32)
T ss_dssp CSSSCCBCTTSCE
T ss_pred eeEeCceecCCcc
Confidence 8999999876553
No 3
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.70 E-value=13 Score=21.17 Aligned_cols=14 Identities=43% Similarity=1.092 Sum_probs=10.0
Q ss_pred eeeccccccccCCcc
Q 015564 7 ECSVCHSKLVSPTTK 21 (404)
Q Consensus 7 ~~~~~~~~~~~~~~~ 21 (404)
.|+.||.+++ |+++
T Consensus 1 tC~tC~n~LV-PGDR 14 (33)
T d1rutx4 1 TCSTCRNRLV-PGDR 14 (33)
T ss_dssp BCTTTCCBCC-TTCE
T ss_pred Cccccccccc-CCce
Confidence 4999999875 4443
No 4
>d1rwja_ a.138.1.1 (A:) Cytochrome c7 (cytochrome c551.5, PpcA) {Geobacter sulfurreducens, GSU1996 [TaxId: 35554]}
Probab=19.43 E-value=17 Score=25.66 Aligned_cols=16 Identities=44% Similarity=0.964 Sum_probs=12.2
Q ss_pred CceeeeccccccccCC
Q 015564 4 GMIECSVCHSKLVSPT 19 (404)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (404)
++..|.+||.++-...
T Consensus 28 ~~~~C~~CH~~iF~~~ 43 (81)
T d1rwja_ 28 GMYKCNECHTKLFAYK 43 (81)
T ss_dssp TTCCGGGTBTTTBCSS
T ss_pred CcCCccccchhhcccC
Confidence 4578999999975543
No 5
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=14.56 E-value=27 Score=24.64 Aligned_cols=9 Identities=33% Similarity=1.066 Sum_probs=7.5
Q ss_pred eeecccccc
Q 015564 7 ECSVCHSKL 15 (404)
Q Consensus 7 ~~~~~~~~~ 15 (404)
-|+.|||..
T Consensus 10 ~C~~CHs~~ 18 (85)
T d1pbya1 10 ACAACHVQH 18 (85)
T ss_dssp TGGGTSCBC
T ss_pred HHHHhCCcc
Confidence 599999974
No 6
>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}
Probab=12.71 E-value=21 Score=25.18 Aligned_cols=9 Identities=33% Similarity=0.752 Sum_probs=7.3
Q ss_pred eeecccccc
Q 015564 7 ECSVCHSKL 15 (404)
Q Consensus 7 ~~~~~~~~~ 15 (404)
-|+.||+..
T Consensus 10 ~C~~CHs~~ 18 (84)
T d1jmxa1 10 KCMGCHIPE 18 (84)
T ss_dssp HHBTTBCEE
T ss_pred HHHHhcCch
Confidence 599999863
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=12.31 E-value=2.9e+02 Score=22.88 Aligned_cols=62 Identities=15% Similarity=0.099 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 015564 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGI 186 (404)
Q Consensus 121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv 186 (404)
++++.+++.++.-.+...++..=...- .-.-.+.+++.-++++.||.-+.+|+.=.+++..+
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~----a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~ 65 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLF----AITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGL 65 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHH----HHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHH----HHHHHHHHHheEEEEEccCccceehhhhHHHHHHH
Confidence 455556555555444444444322222 22445677778888999999998888655555444
No 8
>d1kx7a_ a.3.1.1 (A:) Mono-heme c-type cytochrome ScyA {Shewanella putrefaciens [TaxId: 24]}
Probab=11.97 E-value=60 Score=21.74 Aligned_cols=20 Identities=45% Similarity=0.670 Sum_probs=12.9
Q ss_pred eeeccccccccCCccchhhh
Q 015564 7 ECSVCHSKLVSPTTKSISRA 26 (404)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ 26 (404)
-|..||.....+.++...+.
T Consensus 13 ~Ca~CHg~~~~G~p~~~~~~ 32 (81)
T d1kx7a_ 13 ACTVCHSMGVAGAPKSHNTA 32 (81)
T ss_dssp TTTSSTTTTCTTCCCSSCST
T ss_pred HHHHHccCCCCCCCCCCChh
Confidence 49999987665554444333
No 9
>d1t2ya_ g.46.1.1 (A:) Metallothionein {Neurospora crassa [TaxId: 5141]}
Probab=11.63 E-value=27 Score=18.45 Aligned_cols=9 Identities=56% Similarity=0.966 Sum_probs=6.6
Q ss_pred eeeeccccc
Q 015564 6 IECSVCHSK 14 (404)
Q Consensus 6 ~~~~~~~~~ 14 (404)
-.||.|++|
T Consensus 17 cscsncgsk 25 (26)
T d1t2ya_ 17 CSCSNCGSK 25 (26)
T ss_dssp CCSSTTSCC
T ss_pred ccccccccC
Confidence 458888875
No 10
>d1nmla1 a.3.1.5 (A:1-166) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}
Probab=11.59 E-value=35 Score=27.16 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=18.3
Q ss_pred CCCceeeeccccccccCCc-cchhhhhccC
Q 015564 2 KNGMIECSVCHSKLVSPTT-KSISRAYDRH 30 (404)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 30 (404)
+||.+-|..||..-....+ ...+.-.|++
T Consensus 45 ~~~~~SCaSCH~~~~~f~d~~~~s~g~~g~ 74 (166)
T d1nmla1 45 SSHLISCNTCHNVGLGGDDELPTSIGHGWQ 74 (166)
T ss_dssp TTSCCCHHHHSCTTTTTSCSSCBSCSTTCC
T ss_pred CCCCcccccccChhhccccccccccccCCc
Confidence 5899999999965433333 4445555544
Done!