BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015565
(404 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94K75|RHON1_ARATH Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis
thaliana GN=RHON1 PE=1 SV=1
Length = 401
Score = 253 bits (647), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 195/418 (46%), Positives = 251/418 (60%), Gaps = 38/418 (9%)
Query: 2 GNFTVS---LSSYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGA 58
G F ++ + Y S+ RC VS R +A+ CSS D K G +K +
Sbjct: 5 GTFHLTSDYVPGYTLSDSRCFFNSAVSRRTLAILPCSSCLDH------KNGRLKSVPNRS 58
Query: 59 SFACRASSGSYRRNPDFSRQNRNGYRGRNRQNEERDSIDDE-SELLSSRNGPILSLSNSP 117
SF CRASSG YRRNPDFSR N++GYRG NRQ+ R+ D E S++LSSRNGP+ +LS+SP
Sbjct: 59 SFVCRASSGGYRRNPDFSRLNKHGYRGNNRQSGGREDFDIENSDMLSSRNGPLFNLSSSP 118
Query: 118 KFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESM--QGQRKESETVDSLLKLL 175
KFQATS+PGPREKEIVELFRKVQ QLR RAAA++++K +GQ KESETVDSLLKLL
Sbjct: 119 KFQATSSPGPREKEIVELFRKVQAQLRARAAAKKEEKKIEEASKGQGKESETVDSLLKLL 178
Query: 176 RKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHI--EDKSTSFFDSSSRARTESREPNVSSF 233
RKHS EQ KR+ S SS Q E G + +D++ + S +++ N SSF
Sbjct: 179 RKHSGEQSKRQVSKFSS------QGEVQGDTVDKQDRTGNLVTSG------NKDNNASSF 226
Query: 234 TRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTDPKR----ESE 289
TRP S+FRR+SPV + + P YSSE T + S + KK ++E+H +P+ E E
Sbjct: 227 TRPTSSFRRKSPVPRSQSPPAYSSEATFDQSSSYSVTWTQKKDTVELHDEPEHEPAYEHE 286
Query: 290 SEPELETEPEASFA----DGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVSE 345
EPE E+EP D E+ E+S D +D VL + I+D +
Sbjct: 287 HEPENESEPGPVTTMLEPDSELKPESSSFYQEEEDDDVTFD-VLSQDDGILD---VLSDD 342
Query: 346 EGESSDNDEDENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSS 403
+ D DED ++ EE DLS LKL ELR +AKSRG+KG SKMKKA L+ELL S
Sbjct: 343 DESLDDADEDSDEAEEEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVELLGSDS 400
>sp|Q8L4E7|BP73_ORYSJ SAP-like protein BP-73 OS=Oryza sativa subsp. japonica GN=BP-73
PE=1 SV=1
Length = 375
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 223/399 (55%), Gaps = 42/399 (10%)
Query: 13 PSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASSGSYR-R 71
P GR LP R + + S+ +L +K+ S C A+ ++R R
Sbjct: 5 PHPGRTLPAYHGDNRFLLGACFLSK--LPMLRPMKL----------SLVCSANPNNHRSR 52
Query: 72 NPDFSRQNRNG-YRGRNRQNEERD---SIDD-ESELLSSRNGPILSLSNSPKFQATSTPG 126
+ D +R + G R +++ +E+D +ID+ +++++SS+NGP +SL+++ + QATS PG
Sbjct: 53 SSDITRHQKGGSARRKSKPYQEKDDSENIDEFDTDIMSSKNGPPISLTSNSRPQATSVPG 112
Query: 127 PREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVEQGKRK 186
REKEIVELF++VQ QLR R +E+KK E + Q E +VDSLL LLRKHSV+Q ++
Sbjct: 113 EREKEIVELFKRVQAQLRARGKGKEEKKPEQAKAQ-GERGSVDSLLNLLRKHSVDQRRK- 170
Query: 187 SSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFRRRSPV 246
SG + S++Q + + +++S F + + E ++P+ ++F RPASNFRRRSPV
Sbjct: 171 --SGDEKEQSVDQTKRSNESGNKQNSSIFIKND-TQEEQKKPHPAAFKRPASNFRRRSPV 227
Query: 247 TQFKYQPVYSSEETENSISRLDSSGKGKKSSLE--IHTD-PKRESESEPELETEPEASFA 303
K+QPV ++ + E I+ ++ + + K +LE TD P S EP EPE
Sbjct: 228 PNVKFQPV-TNVDAERVINNINDAVQEAKPTLENKAATDEPDSVSTFEPNSVIEPENLSL 286
Query: 304 DGEVYDEASDVESNVITDGSLYDEVL--ENEPNIIDDSVYRVSEEGESSDNDEDENKQEE 361
D D SD E D S DE +EP++ SV + D D +
Sbjct: 287 DD--LDHISDDE----PDASDTDEPSGEYDEPSLQIPSVPII-------DESHDTTLKSS 333
Query: 362 IENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLA 400
+ DLS LK+ ELR LAKSRG+KG+SKMKK L+ELL+
Sbjct: 334 LGGPDLSTLKVTELRELAKSRGIKGYSKMKKNDLVELLS 372
>sp|A9NHC6|RS2_ACHLI 30S ribosomal protein S2 OS=Acholeplasma laidlawii (strain PG-8A)
GN=rpsB PE=3 SV=1
Length = 342
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 28/34 (82%)
Query: 366 DLSALKLPELRALAKSRGVKGFSKMKKAVLLELL 399
DLS LK+ EL+ LAK++G++ +SK++KA L+E L
Sbjct: 307 DLSTLKVAELKELAKAKGIENYSKLRKAELVEAL 340
>sp|Q6ZRG5|YQ015_HUMAN Putative uncharacterized protein FLJ43944 OS=Homo sapiens PE=5 SV=1
Length = 221
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 244 SPVTQ-FKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTDPKRESESEP 292
SPV Q F +P ++E E S ++ ++SG KS+ E++ PK+E ++P
Sbjct: 102 SPVQQEFPAEPTEPAKEVEPSATQQEASGHPLKSTKEVNPPPKQEIPAQP 151
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.124 0.330
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,076,213
Number of Sequences: 539616
Number of extensions: 6232328
Number of successful extensions: 27994
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 949
Number of HSP's that attempted gapping in prelim test: 24187
Number of HSP's gapped (non-prelim): 3063
length of query: 404
length of database: 191,569,459
effective HSP length: 120
effective length of query: 284
effective length of database: 126,815,539
effective search space: 36015613076
effective search space used: 36015613076
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 62 (28.5 bits)