Query 015565
Match_columns 404
No_of_seqs 114 out of 262
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 14:49:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2out_A MU-like prophage flumu 98.2 1.4E-06 4.9E-11 75.9 4.9 39 364-402 86-124 (131)
2 2do1_A Nuclear protein HCC-1; 96.9 0.00099 3.4E-08 50.3 4.5 35 365-401 8-42 (55)
3 1h1j_S THO1 protein; SAP domai 96.8 0.0013 4.5E-08 48.9 4.2 35 365-401 3-37 (51)
4 1zrj_A E1B-55KDA-associated pr 96.5 0.0025 8.6E-08 47.3 4.4 35 365-401 8-42 (50)
5 2kvu_A MKL/myocardin-like prot 96.3 0.0042 1.4E-07 49.8 4.8 35 365-401 24-58 (75)
6 1jjr_A KU70, thyroid autoantig 95.5 0.0093 3.2E-07 52.7 3.9 37 363-401 57-93 (151)
7 2rnn_A E3 SUMO-protein ligase 95.1 0.015 5.2E-07 49.6 3.9 35 365-401 35-69 (114)
8 1jjr_A KU70, thyroid autoantig 95.0 0.0041 1.4E-07 55.0 0.0 37 363-401 111-147 (151)
9 1jey_A KU70; double-strand DNA 89.9 0.059 2E-06 54.6 0.0 37 363-401 569-605 (609)
10 2ld7_A Histone deacetylase com 86.7 1.6 5.3E-05 36.1 6.5 37 365-401 22-58 (94)
11 3skq_A Mitochondrial distribut 46.6 18 0.00061 34.4 4.3 34 366-400 143-176 (249)
12 1y02_A CARP2, FYVE-ring finger 37.3 28 0.00097 29.3 3.7 37 365-401 74-110 (120)
13 2hue_C Histone H4; mini beta s 34.3 33 0.0011 26.7 3.4 35 366-400 7-41 (84)
14 1id3_B Histone H4; nucleosome 25.7 48 0.0017 27.0 3.1 35 366-400 25-59 (102)
15 2w51_A Protein arMet; MANF, CD 25.7 11 0.00038 33.9 -0.8 37 365-401 106-142 (158)
16 2j1d_G DAAM1, disheveled-assoc 22.6 42 0.0015 33.2 2.6 15 164-178 434-448 (483)
17 2cpg_A REPA protein, transcrip 22.5 83 0.0028 20.6 3.3 25 368-398 10-34 (45)
18 2djv_A Methionyl-tRNA syntheta 21.7 94 0.0032 24.4 3.9 22 121-142 4-25 (79)
19 1zbh_A 3'-5' exonuclease ERI1; 20.9 95 0.0032 28.4 4.4 35 364-400 23-57 (299)
No 1
>2out_A MU-like prophage flumu protein GP35, protein HI1507 in MU-like prophage flumu region...; structural genomics, hypothetical protein; NMR {Haemophilus influenzae} SCOP: a.140.3.2 d.344.1.1
Probab=98.17 E-value=1.4e-06 Score=75.90 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=36.5
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcC
Q 015565 364 NGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGS 402 (404)
Q Consensus 364 ~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~~ 402 (404)
..+|..|||+|||++++++||+++++|+|.|||++|...
T Consensus 86 ~~~l~~lTV~ELKa~Lde~gIe~~ssakKaELiaLL~~a 124 (131)
T 2out_A 86 STDLNTFTVEQLKAQLTERGITFKQSATKAELIALFAPA 124 (131)
T ss_dssp CCSSTTCCSHHHHHHHHHHTCCCSSSCCSHHHHHHCCSC
T ss_pred cCccccccHHHHHHHHHHcCCcccccCCHHHHHHHHHHh
Confidence 468999999999999999999999999999999999763
No 2
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=96.90 E-value=0.00099 Score=50.31 Aligned_cols=35 Identities=31% Similarity=0.388 Sum_probs=30.9
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565 365 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 401 (404)
Q Consensus 365 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~ 401 (404)
.+|..|||+|||++++.+|+.. +. +|+|||+.|+.
T Consensus 8 ~~l~klkV~eLK~~L~~rGL~~-~G-~KaeLieRL~~ 42 (55)
T 2do1_A 8 VELHKLKLAELKQECLARGLET-KG-IKQDLIHRLQA 42 (55)
T ss_dssp CCTTTSCHHHHHHHHHHHTCCC-CS-CHHHHHHHHHH
T ss_pred cCHHHCcHHHHHHHHHHcCCCC-CC-cHHHHHHHHHH
Confidence 4799999999999999999986 33 79999999964
No 3
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=96.76 E-value=0.0013 Score=48.90 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=30.3
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565 365 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 401 (404)
Q Consensus 365 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~ 401 (404)
.+|+.|||+|||++++.+||.. + =+|+|||+.|+.
T Consensus 3 ~~~~kltV~eLK~~Lk~RGL~~-~-G~KadLieRL~~ 37 (51)
T 1h1j_S 3 ADYSSLTVVQLKDLLTKRNLSV-G-GLKNELVQRLIK 37 (51)
T ss_dssp CSGGGCCHHHHHHHHHHTTCCC-C-SSHHHHHHHHHH
T ss_pred chHHHCcHHHHHHHHHHcCCCC-C-CcHHHHHHHHHH
Confidence 4789999999999999999986 3 349999999864
No 4
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=96.54 E-value=0.0025 Score=47.32 Aligned_cols=35 Identities=37% Similarity=0.398 Sum_probs=30.5
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565 365 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 401 (404)
Q Consensus 365 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~ 401 (404)
.+|+.|+|+|||+.++.+||.. +=+|+|||+.|+.
T Consensus 8 ~~~~klkV~eLK~eLk~RgL~~--~G~Ka~Li~RL~~ 42 (50)
T 1zrj_A 8 MDVRRLKVNELREELQRRGLDT--RGLKAELAERLQA 42 (50)
T ss_dssp CCGGGSCHHHHHHHHHHTTCCC--CSCHHHHHHHHHH
T ss_pred CCHHHCcHHHHHHHHHHcCCCC--CCcHHHHHHHHHH
Confidence 5899999999999999999986 3359999999864
No 5
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=96.33 E-value=0.0042 Score=49.84 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=30.4
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565 365 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 401 (404)
Q Consensus 365 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~ 401 (404)
.+|+.|||+|||++.+.+||.. +. +|+|||+.|+.
T Consensus 24 ~~l~klkVaeLK~eLk~RGL~~-sG-~KaeLIeRL~~ 58 (75)
T 2kvu_A 24 ANLDDMKVAELKQELKLRSLPV-SG-TKTELIERLRA 58 (75)
T ss_dssp TTTTTSCHHHHHHHHHHTTCCC-CS-CHHHHHHHHHH
T ss_pred HHHHHCcHHHHHHHHHHcCCCC-CC-CHHHHHHHHHH
Confidence 3899999999999999999986 33 59999999964
No 6
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=95.52 E-value=0.0093 Score=52.74 Aligned_cols=37 Identities=32% Similarity=0.550 Sum_probs=33.5
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565 363 ENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 401 (404)
Q Consensus 363 ~~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~ 401 (404)
..+.|..|||++||.+++.+||+. ..+|+|||+.|+.
T Consensus 57 ~~g~L~kltV~eLK~~l~~~gL~~--~GkKadLI~Ri~~ 93 (151)
T 1jjr_A 57 SKGTLGKFTVPMLKEACRAYGLKS--GLKKQELLEALTK 93 (151)
T ss_dssp HHTCTTSSCHHHHHHHHHHHTCCC--CSSSHHHHHHHHH
T ss_pred HcCcHHhccHHHHHHHHHHcCCCC--cccHHHHHHHHHH
Confidence 568999999999999999999985 7789999999965
No 7
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=95.15 E-value=0.015 Score=49.63 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=30.0
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565 365 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 401 (404)
Q Consensus 365 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~ 401 (404)
..|..|||+|||++++++|+...+ +|+|||+.|+.
T Consensus 35 ~~l~kLtVaELK~~cr~~GL~~sG--kKaeLi~RI~~ 69 (114)
T 2rnn_A 35 TLMELLKVSELKDICRSVSFPVSG--RKAVLQDLIRN 69 (114)
T ss_dssp HHHTTCCHHHHHHHHHHTTCCTTS--CHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHcCCCcCC--cHHHHHHHHHH
Confidence 468999999999999999998533 59999999863
No 8
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=95.00 E-value=0.0041 Score=54.97 Aligned_cols=37 Identities=32% Similarity=0.550 Sum_probs=0.0
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565 363 ENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 401 (404)
Q Consensus 363 ~~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~ 401 (404)
..+.|..|||++||++++.+|++. ..+|+|||+.|..
T Consensus 111 ~~g~l~klTV~~Lk~~l~~~gl~~--~GkKaeLieRi~~ 147 (151)
T 1jjr_A 111 SKGTLGKFTVPMLKEACRAYGLKS--GLKKQELLEALTK 147 (151)
T ss_dssp ---------------------------------------
T ss_pred hcCccccccHHHHHHHHHHcCCCC--CCcHHHHHHHHHH
Confidence 457899999999999999999884 6789999999975
No 9
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=89.93 E-value=0.059 Score=54.65 Aligned_cols=37 Identities=35% Similarity=0.566 Sum_probs=0.0
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565 363 ENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 401 (404)
Q Consensus 363 ~~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~ 401 (404)
..+.|..|||++||++++.+|++ ...||+|||+.|..
T Consensus 569 ~~g~l~~~tv~~Lk~~l~~~~~~--~~~kK~~li~~i~~ 605 (609)
T 1jey_A 569 SKGTLGKFTVPMLKEACRAYGLK--SGLKKQELLEALTK 605 (609)
T ss_dssp ---------------------------------------
T ss_pred HCCCchhccHHHHHHHHHHcCCC--CCCcHHHHHHHHHH
Confidence 44789999999999999999987 57899999999864
No 10
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=86.74 E-value=1.6 Score=36.12 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=34.5
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565 365 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 401 (404)
Q Consensus 365 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~ 401 (404)
-+|..|.+.-|++..+..+|.....+.|.+|+.+++.
T Consensus 22 vdf~kL~~~tLrrY~r~y~L~~~~~~sK~qLa~aV~k 58 (94)
T 2ld7_A 22 VDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGC 58 (94)
T ss_dssp CCCSSSCHHHHHHHHHHTTCCCCSSCCHHHHHHHHHH
T ss_pred cCHHHCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 4899999999999999999999999999999999853
No 11
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=46.55 E-value=18 Score=34.38 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHh
Q 015565 366 DLSALKLPELRALAKSRGVKGFSKMKKAVLLELLA 400 (404)
Q Consensus 366 dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq 400 (404)
++..|+++||+..|..+||.. ..+...+|...|+
T Consensus 143 GV~sLs~~ELr~AC~~RGm~~-~gls~e~LR~~L~ 176 (249)
T 3skq_A 143 GVESLSQEELYQACVSRGMKA-YGVSKEDLVDNLK 176 (249)
T ss_dssp CGGGSCHHHHHHHHHHTTCCC-TTCCHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCCC-CCCCHHHHHHHHH
Confidence 488999999999999999998 7899999998885
No 12
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=37.30 E-value=28 Score=29.33 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=33.5
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565 365 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 401 (404)
Q Consensus 365 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~ 401 (404)
..|-.|++.+|+.....++|..-.-.-|.|||++|-.
T Consensus 74 ~~l~~lkvkdL~~yL~~~~I~~~~c~EKedLv~lvl~ 110 (120)
T 1y02_A 74 EELMKMKVKDLRDYLSLHDISTEMCREKEELVLLVLG 110 (120)
T ss_dssp HHHHTSCHHHHHHHHHHTTCCCTTCCSHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHhCCCCcccceeHHHHHHHHHh
Confidence 4578899999999999999999999999999999854
No 13
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=34.27 E-value=33 Score=26.73 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=30.8
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHh
Q 015565 366 DLSALKLPELRALAKSRGVKGFSKMKKAVLLELLA 400 (404)
Q Consensus 366 dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq 400 (404)
....++.+-++.||+..|++.+|..=+.+|.+.|.
T Consensus 7 ~~~~ip~~~I~Riar~~Gv~rIs~da~~~l~~~l~ 41 (84)
T 2hue_C 7 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 41 (84)
T ss_dssp GCCSSCHHHHHHHHHHTTCCEECTTHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHcCchhccHHHHHHHHHHHH
Confidence 45679999999999999999999999999888774
No 14
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=25.68 E-value=48 Score=26.97 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=31.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHh
Q 015565 366 DLSALKLPELRALAKSRGVKGFSKMKKAVLLELLA 400 (404)
Q Consensus 366 dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq 400 (404)
.+..++.+-++.||+..|++-+|..=+.+|.++|.
T Consensus 25 ~i~~ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le 59 (102)
T 1id3_B 25 NIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLK 59 (102)
T ss_dssp CGGGSCHHHHHHHHHHTTCCEECTTHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHcCchhccHHHHHHHHHHHH
Confidence 46779999999999999999999999999988774
No 15
>2w51_A Protein arMet; MANF, CDNF, saposin, secreted, ER stress, phosphoprotein, neurotrophic factor, sialic acid, glycoprotein, growth factor, hormone; 2.80A {Homo sapiens} PDB: 2kvd_A 2rqy_A 2kve_A
Probab=25.67 E-value=11 Score=33.90 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=30.4
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565 365 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 401 (404)
Q Consensus 365 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~ 401 (404)
.+|..|+|.+||+|-...|+.-.+=.-|.|.|..|+.
T Consensus 106 ~Dl~KlrVkeLK~IL~d~g~~C~GC~EK~DfV~ri~e 142 (158)
T 2w51_A 106 VDLKKLRVKELKKILDDWGETCKGCAEKSDYIRKINE 142 (158)
T ss_dssp SSCCTTHHHHHHHHTTCCCTTCSSCHHHHTTC-----
T ss_pred CChhhccHHHHHHHHHHcCCCCCchhhhHHHHHHHHH
Confidence 5899999999999999999999999999999998864
No 16
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=22.55 E-value=42 Score=33.21 Aligned_cols=15 Identities=40% Similarity=0.496 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHhh
Q 015565 164 ESETVDSLLKLLRKH 178 (404)
Q Consensus 164 e~~tVDSLLkLLRKH 178 (404)
+.|.+|+||.-||.-
T Consensus 434 ~~g~~D~Ll~~Lr~g 448 (483)
T 2j1d_G 434 ESGEFDDLVSALRSG 448 (483)
T ss_dssp ---------------
T ss_pred ccccHHHHHHHHhCC
Confidence 668999999999874
No 17
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=22.52 E-value=83 Score=20.64 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 015565 368 SALKLPELRALAKSRGVKGFSKMKKAVLLEL 398 (404)
Q Consensus 368 s~MtvaELK~LAKe~GIKGySkMKKaELIea 398 (404)
..-.+.+|.++|+..|+ .|++||+.
T Consensus 10 ~~~l~~~Ld~~a~~~g~------srS~~ir~ 34 (45)
T 2cpg_A 10 SESVLENLEKMAREMGL------SKSAMISV 34 (45)
T ss_dssp EHHHHHHHHHHHHHHTC------CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCc------CHHHHHHH
Confidence 33457899999999985 58898874
No 18
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.71 E-value=94 Score=24.44 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.7
Q ss_pred cccCCCcchHHHHHHHHHHHHH
Q 015565 121 ATSTPGPREKEIVELFRKVQVQ 142 (404)
Q Consensus 121 ATs~PGpREKEIVELFrkVQAq 142 (404)
.|+.|++.+.++.+|+..|.+|
T Consensus 4 ~~~~~~~~~~~~~~l~~~V~~Q 25 (79)
T 2djv_A 4 GSSGTTAKPQQIQALMDEVTKQ 25 (79)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCcchHHHHHHHHHHHHH
Confidence 4688899999999999999987
No 19
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=20.95 E-value=95 Score=28.39 Aligned_cols=35 Identities=29% Similarity=0.251 Sum_probs=28.1
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHh
Q 015565 364 NGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLA 400 (404)
Q Consensus 364 ~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq 400 (404)
++-+..|+++||++.++++|+...+ .|..|.+.|+
T Consensus 23 ~~~~~~m~~~~l~~~l~~~~l~~~g--~~~~l~~~l~ 57 (299)
T 1zbh_A 23 NGCINRMSKEELRAKLSEFKLETRG--VKDVLKKRLK 57 (299)
T ss_dssp HHHHHSCCHHHHHHHHHHTTCCCCS--CHHHHHHHHH
T ss_pred hchhhhccHHHHHHHHHHcCCCCcc--cHHHHHHHHH
Confidence 3456799999999999999998644 6777777665
Done!