BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015567
(404 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 137/297 (46%), Gaps = 29/297 (9%)
Query: 123 LRRLFSGAIAGAVSRTAVAPLETIRTHLMVGTSGH--STAEVFQNIM-------QTDGWK 173
L+ +G +A A+S+TAVAP+E ++ L V + S + ++ I+ + G+
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 174 GLFRGNLVNVIRVAPSKAIELFAFDTVNKHLSAKPGEPSKV---PIPASLIAGACAGVSS 230
+RGNL NVIR P++A+ FAF K + + K +L +G AG +S
Sbjct: 68 SFWRGNLANVIRYFPTQALN-FAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATS 126
Query: 231 TLCTYPLELVKTRLTI---QGDA---YNGIVDAFVKIIRQEGPAELFRGLAPSLIGVIPY 284
YPL+ +TRL +G A + G+ + KI + +G L++G S+ G+I Y
Sbjct: 127 LCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIY 186
Query: 285 SATNYFAYDTLRKTYRKVFKQEKIGNIETLLXXXXXXXXXXXXTFPLEVARKQMQVGALS 344
A + YDT + + + + I + + ++P + R++M + S
Sbjct: 187 RAAYFGVYDTAKGM---LPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMM--QS 241
Query: 345 GRQ----VYKNVLHALASILEKEGLPGLYKGLGPSCMKLVPAAGISFMCYEACKRIL 397
GR+ +Y + I + EG +KG + ++ + A + + Y+ K+ +
Sbjct: 242 GRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFV-LVLYDEIKKFV 297
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 17/195 (8%)
Query: 220 LIAGACAGVSSTLCTYPLELVKTRLTIQGDA-----------YNGIVDAFVKIIRQEGPA 268
L AG A ++ L T+PL+ K RL IQG++ Y G++ + ++R EGP
Sbjct: 6 LGAGTAACIAD-LITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 269 ELFRGLAPSLIGVIPYSATNYFAYDTLRKTYRKVFKQEKIGNIETLLXXXXXXXXXXXXT 328
L+ GL L + +++ YD++++ Y K + IG+ LL
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGS--RLLAGSTTGALAVAVA 122
Query: 329 FPLEV--ARKQMQVGALSGRQVYKNVLHALASILEKEGLPGLYKGLGPSCMKLVPAAGIS 386
P +V R Q Q A GR+ Y++ + A +I +EG+ GL+KG P+ +
Sbjct: 123 QPTDVVKVRFQAQARAGGGRR-YQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181
Query: 387 FMCYEACKRILVEKD 401
+ Y+ K L++ +
Sbjct: 182 LVTYDLIKDTLLKAN 196
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 9/190 (4%)
Query: 125 RLFSGAIAGAVSRTAVAPLETIRTHLMV------GTSGHSTAEVFQNIMQTDGWKGLFRG 178
RL +G+ GA++ P + ++ G ST E ++ I + +G +GL++G
Sbjct: 107 RLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKG 166
Query: 179 NLVNVIRVAPSKAIELFAFDTVNKHLSAKPGEPSKVPIPASLIAGACAGVSSTLCTYPLE 238
NV R A EL +D + L +P + AG +T+ P++
Sbjct: 167 TSPNVARNAIVNCAELVTYDLIKDTL--LKANLMTDDLPCHFTSAFGAGFCTTVIASPVD 224
Query: 239 LVKTR-LTIQGDAYNGIVDAFVKIIRQEGPAELFRGLAPSLIGVIPYSATNYFAYDTLRK 297
+VKTR + Y+ + ++R+EGP ++G PS + + ++ + Y+ L++
Sbjct: 225 VVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284
Query: 298 TYRKVFKQEK 307
++ +
Sbjct: 285 ALMAAYQSRE 294
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 24/245 (9%)
Query: 165 NIMQTDGWKGLFRGNLVNVIRVAPSKAIELFAFDTVNKHLSAKPGEPSKVPIPASLIAGA 224
+++T+G + L+ G + + R ++ + +D+V K K E + I + L+AG+
Sbjct: 56 TMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSV-KQFYTKGSEHAG--IGSRLLAGS 112
Query: 225 CAGVSSTLCTYPLELVKTRLTIQ-----GDAYNGIVDAFVKIIRQEGPAELFRGLAPSLI 279
G + P ++VK R Q G Y V+A+ I R+EG L++G +P++
Sbjct: 113 TTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVA 172
Query: 280 GVIPYSATNYFAYDTLRKTYRKVFKQEKIGNIET------LLXXXXXXXXXXXXTFPLEV 333
+ YD ++ T K N+ T P++V
Sbjct: 173 RNAIVNCAELVTYDLIKDTLLK-------ANLMTDDLPCHFTSAFGAGFCTTVIASPVDV 225
Query: 334 ARKQMQVGALSGRQVYKNVLHALASILEKEGLPGLYKGLGPSCMKLVPAAGISFMCYEAC 393
+ + AL Y + H ++L KEG YKG PS ++L + F+ YE
Sbjct: 226 VKTRYMNSALGQ---YHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQL 282
Query: 394 KRILV 398
KR L+
Sbjct: 283 KRALM 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,789,128
Number of Sequences: 62578
Number of extensions: 401326
Number of successful extensions: 730
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 712
Number of HSP's gapped (non-prelim): 7
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)