Query 015567
Match_columns 404
No_of_seqs 386 out of 2037
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 14:51:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 1.8E-55 6.2E-60 422.3 13.9 269 125-400 4-289 (303)
2 1okc_A ADP, ATP carrier protei 100.0 8E-55 2.7E-59 416.7 16.9 274 120-397 5-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 2.6E-35 9.1E-40 281.3 12.4 187 215-401 6-205 (297)
4 2lck_A Mitochondrial uncouplin 100.0 6.4E-35 2.2E-39 279.5 10.8 182 218-401 3-196 (303)
5 3tgu_G UQCRQ, mitochondrial ub 23.3 67 0.0023 23.3 3.2 36 364-399 33-68 (81)
6 3f2e_A SIRV coat protein; four 17.5 1.1E+02 0.0039 21.7 3.2 38 244-281 1-42 (100)
7 3vjj_A P9-1; 3.00A {Rice black 16.8 56 0.0019 29.5 1.8 36 322-365 273-308 (368)
8 2lv7_A Calcium-binding protein 15.4 15 0.0005 27.6 -2.0 22 4-25 39-60 (100)
9 1pp9_G Ubiquinol-cytochrome C 14.0 1.1E+02 0.0036 22.2 2.4 36 364-399 33-68 (81)
10 1fi6_A EH domain protein REPS1 13.8 23 0.00079 25.8 -1.3 20 5-24 13-32 (92)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.8e-55 Score=422.32 Aligned_cols=269 Identities=22% Similarity=0.361 Sum_probs=245.1
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHcCCC------------CCCHHHHHHHHHHhhchhhhccCchhhHhhhccccee
Q 015567 125 RLFSGAIAGAVSRTAVAPLETIRTHLMVGTS------------GHSTAEVFQNIMQTDGWKGLFRGNLVNVIRVAPSKAI 192 (404)
Q Consensus 125 ~~~aG~~ag~~~~~i~~Pld~vKtrlQ~~~~------------~~s~~~~~~~i~~~eG~~glyrG~~~~ll~~~~~~~i 192 (404)
++++|++|++++.+++||||+||+|+|++.. +.++.+++++|+++||+++||||+.+++++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999998643 4689999999999999999999999999999999999
Q ss_pred ehhhHHHHhhhhcCCCCCCCCCChhhhhhhhhhhhhhhhhccccccceeeEEEecCC-----CCCCHHHHHHHHHHhhCc
Q 015567 193 ELFAFDTVNKHLSAKPGEPSKVPIPASLIAGACAGVSSTLCTYPLELVKTRLTIQGD-----AYNGIVDAFVKIIRQEGP 267 (404)
Q Consensus 193 ~f~~y~~~k~~l~~~~~~~~~~~~~~~~lag~~Ag~~s~~v~~Pld~iKtrlq~~~~-----~y~~~~~~~~~i~r~~G~ 267 (404)
+|.+||.+|+.+.+..+ ..+....+++|++||+++.++++|+|+||+|+|++.. .|.++++++++|+++||+
T Consensus 84 ~f~~ye~~k~~~~~~~~---~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~ 160 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE---HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGI 160 (303)
T ss_dssp TTTHHHHHHHHHSCCCS---SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhcCCc---CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcCh
Confidence 99999999998875422 3567788999999999999999999999999999763 689999999999999999
Q ss_pred ccccCCchHHHHhHHHhHhhHHHHHHHHHHHHHhhhcccccchHHHHHHHhhHhHhHhhccccHHHHHHHHhccccCCCc
Q 015567 268 AELFRGLAPSLIGVIPYSATNYFAYDTLRKTYRKVFKQEKIGNIETLLIGSMAGAISSSATFPLEVARKQMQVGALSGRQ 347 (404)
Q Consensus 268 ~glyrG~~~~llr~~~~~~~~~~~ye~lk~~l~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~PldvvktR~Q~~~~~~~~ 347 (404)
++||||+.+++++.+|+.+++|.+||.+|+.+.+.. ....+....+++|++||++++++++|+||||+|||++.. .
T Consensus 161 ~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~-~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~---~ 236 (303)
T 2lck_A 161 RGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN-LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL---G 236 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT-SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS---S
T ss_pred hhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc---c
Confidence 999999999999999999999999999999876532 223456678999999999999999999999999998753 3
Q ss_pred ccCcHHHHHHHHHHhcCccccccChHHHHHhHhhhHHHHHHHHHHHHHHhhhh
Q 015567 348 VYKNVLHALASILEKEGLPGLYKGLGPSCMKLVPAAGISFMCYEACKRILVEK 400 (404)
Q Consensus 348 ~y~~~~~~~~~i~~~eG~~glyrG~~~~llr~~p~~~i~f~~ye~~k~~l~~~ 400 (404)
.|.++++|+++|+++||++|||||+.|+++|.+|.++++|.+||.+|+.+...
T Consensus 237 ~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 237 QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp SCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred ccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999877543
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=8e-55 Score=416.66 Aligned_cols=274 Identities=24% Similarity=0.437 Sum_probs=237.8
Q ss_pred ChhHHHHHHHHHHHHHHHHhhchHHHHHHHHHcCC---------CCCCHHHHHHHHHHhhchhhhccCchhhHhhhcccc
Q 015567 120 NPSLRRLFSGAIAGAVSRTAVAPLETIRTHLMVGT---------SGHSTAEVFQNIMQTDGWKGLFRGNLVNVIRVAPSK 190 (404)
Q Consensus 120 ~~~~~~~~aG~~ag~~~~~i~~Pld~vKtrlQ~~~---------~~~s~~~~~~~i~~~eG~~glyrG~~~~ll~~~~~~ 190 (404)
.+.+.++++|++||+++.++++|||+||||+|++. .+.++.+++++|+++||++|||||+.+++++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 34678999999999999999999999999999864 347899999999999999999999999999999999
Q ss_pred eeehhhHHHHhhhhcCCCCCCCC--CChhhhhhhhhhhhhhhhhccccccceeeEEEecC------CCCCCHHHHHHHHH
Q 015567 191 AIELFAFDTVNKHLSAKPGEPSK--VPIPASLIAGACAGVSSTLCTYPLELVKTRLTIQG------DAYNGIVDAFVKII 262 (404)
Q Consensus 191 ~i~f~~y~~~k~~l~~~~~~~~~--~~~~~~~lag~~Ag~~s~~v~~Pld~iKtrlq~~~------~~y~~~~~~~~~i~ 262 (404)
+++|.+||.+|+.+....+.... .+....+++|++||++++++++|+|+||+|+|++. ..|.++++++++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999999999954332211111 13456789999999999999999999999999874 36899999999999
Q ss_pred HhhCcccccCCchHHHHhHHHhHhhHHHHHHHHHHHHHhhhcccccchHHHHHHHhhHhHhHhhccccHHHHHHHHhccc
Q 015567 263 RQEGPAELFRGLAPSLIGVIPYSATNYFAYDTLRKTYRKVFKQEKIGNIETLLIGSMAGAISSSATFPLEVARKQMQVGA 342 (404)
Q Consensus 263 r~~G~~glyrG~~~~llr~~~~~~~~~~~ye~lk~~l~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~PldvvktR~Q~~~ 342 (404)
++||+++||||+.+++++.+|+.+++|.+||.+|+.+.+. ...+....+++|++||++++++++|+||||+|||++.
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~---~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~ 241 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP---KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS 241 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG---GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC---CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999976432 2345677899999999999999999999999999875
Q ss_pred cC--CCcccCcHHHHHHHHHHhcCccccccChHHHHHhHhhhHHHHHHHHHHHHHHh
Q 015567 343 LS--GRQVYKNVLHALASILEKEGLPGLYKGLGPSCMKLVPAAGISFMCYEACKRIL 397 (404)
Q Consensus 343 ~~--~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~llr~~p~~~i~f~~ye~~k~~l 397 (404)
.. ....|.++++|+++|+++||++|||||+.|+++|. +.++++|.+||.+|+.+
T Consensus 242 ~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 242 GRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 32 23469999999999999999999999999999996 56789999999998764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.6e-35 Score=281.29 Aligned_cols=187 Identities=25% Similarity=0.416 Sum_probs=164.9
Q ss_pred ChhhhhhhhhhhhhhhhhccccccceeeEEEecC--------CCCCCHHHHHHHHHHhhCcccccCCchHHHHhHHHhHh
Q 015567 215 PIPASLIAGACAGVSSTLCTYPLELVKTRLTIQG--------DAYNGIVDAFVKIIRQEGPAELFRGLAPSLIGVIPYSA 286 (404)
Q Consensus 215 ~~~~~~lag~~Ag~~s~~v~~Pld~iKtrlq~~~--------~~y~~~~~~~~~i~r~~G~~glyrG~~~~llr~~~~~~ 286 (404)
+....+++|++||+++.++++|+|+||+|+|++. ..|+++++++++|+++||+++||||+.+++++.+|+.+
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 4567899999999999999999999999999874 26899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcccc---cchHHHHHHHhhHhHhHhhccccHHHHHHHHhccccC--CCcccCcHHHHHHHHHH
Q 015567 287 TNYFAYDTLRKTYRKVFKQEK---IGNIETLLIGSMAGAISSSATFPLEVARKQMQVGALS--GRQVYKNVLHALASILE 361 (404)
Q Consensus 287 ~~~~~ye~lk~~l~~~~~~~~---~~~~~~~~~g~~ag~~a~~~t~PldvvktR~Q~~~~~--~~~~y~~~~~~~~~i~~ 361 (404)
++|.+||.+|+.+....+... ......+++|++||++++++++|+|+||+|||++... ....|.++++++++|++
T Consensus 86 ~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~ 165 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFK 165 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHH
Confidence 999999999996543222111 1345678999999999999999999999999987532 23468999999999999
Q ss_pred hcCccccccChHHHHHhHhhhHHHHHHHHHHHHHHhhhhc
Q 015567 362 KEGLPGLYKGLGPSCMKLVPAAGISFMCYEACKRILVEKD 401 (404)
Q Consensus 362 ~eG~~glyrG~~~~llr~~p~~~i~f~~ye~~k~~l~~~~ 401 (404)
+||++|||||+.++++|.+|.++++|.+||.+|+.+.+.+
T Consensus 166 ~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~ 205 (297)
T 1okc_A 166 SDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK 205 (297)
T ss_dssp HHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG
T ss_pred hccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999876543
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=6.4e-35 Score=279.49 Aligned_cols=182 Identities=28% Similarity=0.535 Sum_probs=165.7
Q ss_pred hhhhhhhhhhhhhhhccccccceeeEEEecCC-----------CCCCHHHHHHHHHHhhCcccccCCchHHHHhHHHhHh
Q 015567 218 ASLIAGACAGVSSTLCTYPLELVKTRLTIQGD-----------AYNGIVDAFVKIIRQEGPAELFRGLAPSLIGVIPYSA 286 (404)
Q Consensus 218 ~~~lag~~Ag~~s~~v~~Pld~iKtrlq~~~~-----------~y~~~~~~~~~i~r~~G~~glyrG~~~~llr~~~~~~ 286 (404)
..+++|++||+++.++++|+|+||+|+|++.. .|+++++++++|+++||+++||||+.+++++.+|+.+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 35899999999999999999999999999753 6899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcccccchHHHHHHHhhHhHhHhhccccHHHHHHHHhccccC-CCcccCcHHHHHHHHHHhcCc
Q 015567 287 TNYFAYDTLRKTYRKVFKQEKIGNIETLLIGSMAGAISSSATFPLEVARKQMQVGALS-GRQVYKNVLHALASILEKEGL 365 (404)
Q Consensus 287 ~~~~~ye~lk~~l~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~PldvvktR~Q~~~~~-~~~~y~~~~~~~~~i~~~eG~ 365 (404)
++|.+||.+|+.+.+.. +..+....+++|++||++++++++|+|+||+|||++... ....|.++++++++|+++||+
T Consensus 83 i~f~~ye~~k~~~~~~~--~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~ 160 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS--EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGI 160 (303)
T ss_dssp HTTTHHHHHHHHHSCCC--SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhcCC--cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcCh
Confidence 99999999999876431 235667889999999999999999999999999997642 234689999999999999999
Q ss_pred cccccChHHHHHhHhhhHHHHHHHHHHHHHHhhhhc
Q 015567 366 PGLYKGLGPSCMKLVPAAGISFMCYEACKRILVEKD 401 (404)
Q Consensus 366 ~glyrG~~~~llr~~p~~~i~f~~ye~~k~~l~~~~ 401 (404)
+|||||+.++++|.+|..+++|.+||.+|+.+.+..
T Consensus 161 ~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 161 RGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred hhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999887653
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=23.27 E-value=67 Score=23.29 Aligned_cols=36 Identities=14% Similarity=0.333 Sum_probs=28.2
Q ss_pred CccccccChHHHHHhHhhhHHHHHHHHHHHHHHhhh
Q 015567 364 GLPGLYKGLGPSCMKLVPAAGISFMCYEACKRILVE 399 (404)
Q Consensus 364 G~~glyrG~~~~llr~~p~~~i~f~~ye~~k~~l~~ 399 (404)
|+-..+|-+...++..+|..++.+.+|++.++..+.
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~ 68 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFER 68 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 445555666777889999999999999998876543
No 6
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=17.50 E-value=1.1e+02 Score=21.71 Aligned_cols=38 Identities=8% Similarity=0.308 Sum_probs=22.9
Q ss_pred EEecCCCCCCHHHHHHHHHHhhCccc----ccCCchHHHHhH
Q 015567 244 LTIQGDAYNGIVDAFVKIIRQEGPAE----LFRGLAPSLIGV 281 (404)
Q Consensus 244 lq~~~~~y~~~~~~~~~i~r~~G~~g----lyrG~~~~llr~ 281 (404)
||.+-+++.++-+-+..++.+.|+.| +|.|+...+.|.
T Consensus 1 mqtnvpkftsvne~vsavltqygvtgpnraiyqgfglkvara 42 (100)
T 3f2e_A 1 MQTNVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARA 42 (100)
T ss_dssp -------CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH
Confidence 46666778888888888888888754 677776665543
No 7
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=16.79 E-value=56 Score=29.48 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=25.7
Q ss_pred HhHhhccccHHHHHHHHhccccCCCcccCcHHHHHHHHHHhcCc
Q 015567 322 AISSSATFPLEVARKQMQVGALSGRQVYKNVLHALASILEKEGL 365 (404)
Q Consensus 322 ~~a~~~t~PldvvktR~Q~~~~~~~~~y~~~~~~~~~i~~~eG~ 365 (404)
.++++--||||.+|-.++.- -++...+++.+.++|+
T Consensus 273 qLaTFdnypfdllRfqL~Sl--------istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSL--------ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSC--------CCCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhh--------ccChHHHHHHHHhcCc
Confidence 34567789999998877642 2344677888888873
No 8
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=15.40 E-value=15 Score=27.60 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=17.2
Q ss_pred ccccceeecCCCceeeecCCCC
Q 015567 4 RGGIQLFDDKRDGFFSICDLAS 25 (404)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (404)
|..+++||.|+||.++..+|.-
T Consensus 39 ~~~F~~~D~d~~G~I~~~El~~ 60 (100)
T 2lv7_A 39 REAFKVFDRDGNGFISKQELGT 60 (100)
T ss_dssp HHHHHHTCSSCSSCBCHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHH
Confidence 3567889999999998777643
No 9
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=14.02 E-value=1.1e+02 Score=22.21 Aligned_cols=36 Identities=11% Similarity=0.318 Sum_probs=29.0
Q ss_pred CccccccChHHHHHhHhhhHHHHHHHHHHHHHHhhh
Q 015567 364 GLPGLYKGLGPSCMKLVPAAGISFMCYEACKRILVE 399 (404)
Q Consensus 364 G~~glyrG~~~~llr~~p~~~i~f~~ye~~k~~l~~ 399 (404)
|+...+|-+.-.++..+|..++.+.+|++.++..+.
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~ 68 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEK 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHH
Confidence 455667777788889999999999999998887543
No 10
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=13.79 E-value=23 Score=25.76 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=14.8
Q ss_pred cccceeecCCCceeeecCCC
Q 015567 5 GGIQLFDDKRDGFFSICDLA 24 (404)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (404)
..+++||.|+||.++..++.
T Consensus 13 ~~F~~~D~d~dG~I~~~el~ 32 (92)
T 1fi6_A 13 NQFKTIQPDLNGFIPGSAAK 32 (92)
T ss_dssp HHHTTTCCSTTCEEEHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHH
Confidence 45678888889988766554
Done!