Query 015568
Match_columns 404
No_of_seqs 175 out of 613
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:31:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03803 Scramblase: Scramblas 100.0 1.5E-56 3.4E-61 418.3 23.3 202 168-391 7-221 (221)
2 KOG0621 Phospholipid scramblas 100.0 2.2E-49 4.7E-54 388.3 16.0 203 172-396 67-286 (292)
3 COG4894 Uncharacterized conser 99.8 3.4E-19 7.3E-24 159.1 10.2 153 183-389 6-158 (159)
4 PF04525 Tub_2: Tubby C 2; In 99.6 5.1E-14 1.1E-18 129.6 14.6 143 184-347 15-174 (187)
5 PF03803 Scramblase: Scramblas 97.3 0.001 2.2E-08 62.6 7.9 73 203-286 105-182 (221)
6 PF04525 Tub_2: Tubby C 2; In 95.6 0.04 8.7E-07 50.9 7.2 33 270-302 36-70 (187)
7 COG4894 Uncharacterized conser 94.7 0.015 3.3E-07 53.0 1.7 27 277-303 10-37 (159)
8 KOG0621 Phospholipid scramblas 90.7 1.6 3.6E-05 44.0 9.6 48 240-287 189-243 (292)
9 PF08515 TGF_beta_GS: Transfor 28.6 31 0.00067 23.6 1.0 17 385-401 5-23 (29)
10 KOG1924 RhoA GTPase effector D 27.4 1.7E+02 0.0036 34.1 6.9 9 58-66 432-440 (1102)
11 KOG1924 RhoA GTPase effector D 22.2 1E+02 0.0022 35.7 4.1 8 131-138 527-534 (1102)
12 PF12690 BsuPI: Intracellular 22.1 1.8E+02 0.0039 23.8 4.6 35 286-320 4-38 (82)
No 1
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=100.00 E-value=1.5e-56 Score=418.29 Aligned_cols=202 Identities=29% Similarity=0.515 Sum_probs=188.8
Q ss_pred cCCCCccCchhhhCCCeEEEEeeceecccccCCCCCceEEEEcCCCCCceeEEEEeechhhhHhhhcCCCCeEEEEEeCC
Q 015568 168 LEPASLEEVAPLLARSNLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGM 247 (404)
Q Consensus 168 p~P~~P~GLe~Ll~ld~LlIkQkiEllEv~tgfE~~NrY~I~d~~~~Gq~Vy~a~EeS~~~~R~ccg~~RpF~m~I~D~~ 247 (404)
+.|.+|+|||+|.++++|+|+|++|++|++++||++|+|.|+|+. |++||++.|+++++.|+||+++|||+|+|+|+.
T Consensus 7 ~~~~~p~gLe~L~~~~~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~--g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~ 84 (221)
T PF03803_consen 7 TPPNCPPGLEYLAGLDQLLIKQQIEPLEIFTGFETPNRYDIKNPN--GQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNY 84 (221)
T ss_pred CCCCCChHHHHHhCCCEEEEEEEEEEeceecccccCceEEEECCC--CCEEEEEEEeCcceeeeecCCCCCEEEEEEecC
Confidence 345679999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CCeEEEEEeccceece--eE----EE-eeCCeEEEEEEeeecceeeEEEEEeCCcceE-EEECCCe-----eeeeeEEEc
Q 015568 248 GNELFRVRRPFWWITS--SI----YA-EINGKEVGVVHRRWHLWRRVYDLYLGNKQFA-VVENPGF-----WNWTFTLKD 314 (404)
Q Consensus 248 G~eV~tI~RPf~c~~~--~c----~v-E~~G~~IG~V~Q~wsl~~pkF~I~D~ngq~v-~I~GP~c-----~d~~F~I~d 314 (404)
|++|++++||++|+.| || .+ .++|++||+|+|+|++|+++|+|+|++++.+ .|+|||| ++|+|+|+|
T Consensus 85 g~~vl~i~Rp~~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~~~~~~f~I~d~~~~~~~~I~gp~~~~~~~~~~~F~I~~ 164 (221)
T PF03803_consen 85 GREVLTIERPFKCCSCCPCCLQEMEVESPPGNLIGSIRQPFSCCRPNFDIFDANGNPIFTIKGPCCCCSCCCDWEFEIKD 164 (221)
T ss_pred CCEEEEEEcCCcceecccccceeEEEecCCCcEEEEEEEcCcccceEEEEEECCCceEEEEeCCcceeccccceeeeeec
Confidence 9999999999998652 22 23 2599999999999999999999999999876 9999976 589999999
Q ss_pred CCCCEEEEEEeeeccccceeeccCceEEEEEccCCCCCccccchhhhhccccCCCChhHHHHHHHHHHhhhhhhhcc
Q 015568 315 ENGEVLAQIDRDWRGFGFEIFTDAGQYVIRFGSADPSSKTGLASVIQELEVTRPLTLSERAVAVALAISLDNDYFSR 391 (404)
Q Consensus 315 ~dG~~VG~IsKkW~G~~rE~FTdaDnY~I~Fp~~~~~~~~~~~~~~~dldV~rpLdle~KAlLLgAaIlIDymyFE~ 391 (404)
.+|+.||+|+|+|+|+.+|+||++|+|.|+||+ +||+++||+||||+|+|||||||+
T Consensus 165 ~~~~~vg~I~k~w~G~~~e~~t~~d~f~i~Fp~--------------------~l~~~~Kalll~a~~liD~~~Fe~ 221 (221)
T PF03803_consen 165 PNGQEVGSITKKWSGFCRELFTDADNFVIEFPP--------------------DLDVEQKALLLGAAFLIDYMYFER 221 (221)
T ss_pred ccCcEEEEEEEecCCcchhhccccceEEEEcCC--------------------CCCHHHHHHHHHHHHHhhhhhhcC
Confidence 999999999999999999999999999999996 478899999999999999999996
No 2
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2.2e-49 Score=388.30 Aligned_cols=203 Identities=29% Similarity=0.452 Sum_probs=182.7
Q ss_pred CccCchhhhCCCeEEEEeeceecccccCCCCCceEEEEcCCCCCceeEEEEeechhhhHhhhcCCCCeEEEEEeCCCCeE
Q 015568 172 SLEEVAPLLARSNLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGMGNEL 251 (404)
Q Consensus 172 ~P~GLe~Ll~ld~LlIkQkiEllEv~tgfE~~NrY~I~d~~~~Gq~Vy~a~EeS~~~~R~ccg~~RpF~m~I~D~~G~eV 251 (404)
+|+||++|+.+|+++|+|++|++|+++|||++|||.|+|.. |++||++.|+|+++.|++||.+|||.|+|+|+.|+||
T Consensus 67 ~~~~l~~L~~~~~~~V~q~~E~~ei~tG~et~NRY~v~~~~--g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eV 144 (292)
T KOG0621|consen 67 PPNGLEYLAHLDSLMVVQQIEPLEIFTGFETANRYVVHDMY--GQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEV 144 (292)
T ss_pred CCChhheeecCCceEEEEeeeehhhhccCccCcEEEEEcCC--cChhHHHHhhchHHHHHhhccCCcceeEeecccCcEE
Confidence 67789999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EEEEeccceece-e---EE----E-eeCCeEEEEEEeeecceeeEEEEEeCCcceE-EEECCCee------eeeeEEEcC
Q 015568 252 FRVRRPFWWITS-S---IY----A-EINGKEVGVVHRRWHLWRRVYDLYLGNKQFA-VVENPGFW------NWTFTLKDE 315 (404)
Q Consensus 252 ~tI~RPf~c~~~-~---c~----v-E~~G~~IG~V~Q~wsl~~pkF~I~D~ngq~v-~I~GP~c~------d~~F~I~d~ 315 (404)
++++||++|+.+ | |. + .+++.++|+|.|.|+++.++|+|.|..++.+ .|+||+|| +..|.|+..
T Consensus 145 l~~~R~~~c~~~~c~~~~~~~~~v~~p~~~~lG~v~q~~~~~~~~f~i~~~~~~~v~~v~gp~~~~~~~~~d~~f~~~~~ 224 (292)
T KOG0621|consen 145 LTCKRPFPCCSSACALCLAQEIEIQSPPMGLLGKVLQTWGCVNPNFHLWDRDGNLVFLVEGPRCCTFACCDDTVFFPKTT 224 (292)
T ss_pred EEEeccccccccccccccccEEEEEcCCCceEEEEEEeeccccceEEEEcccceeEEEEEcCceeEEEeecCcceeEEEc
Confidence 999999998763 2 11 2 2589999999999999999999999988876 99999543 355666655
Q ss_pred C-CCEEEEEEeeeccccceeeccCceEEEEEccCCCCCccccchhhhhccccCCCChhHHHHHHHHHHhhhhhhhccCCC
Q 015568 316 N-GEVLAQIDRDWRGFGFEIFTDAGQYVIRFGSADPSSKTGLASVIQELEVTRPLTLSERAVAVALAISLDNDYFSRHGG 394 (404)
Q Consensus 316 d-G~~VG~IsKkW~G~~rE~FTdaDnY~I~Fp~~~~~~~~~~~~~~~dldV~rpLdle~KAlLLgAaIlIDymyFE~~~~ 394 (404)
| |..||+|+|+|.|+.+|+|||+|+|.|+||- +||+++||+|||++|+||||+||+++.
T Consensus 225 d~~~~vg~I~k~w~g~~rE~fTDad~f~v~FPl--------------------dLdvk~kavllga~flID~~~Fe~~~~ 284 (292)
T KOG0621|consen 225 DNGRIVGSISRKWAGLVREAFTDADTFVVHFPL--------------------DLDVKLKALLLGSTFLIDYMSFESRGI 284 (292)
T ss_pred CCCeEEEEEeecccchhhhheeccceeeEecCC--------------------cCCHHHHhhhhhheeeEEEEEEecCCC
Confidence 4 5689999999999999999999999999984 477789999999999999999998765
Q ss_pred CC
Q 015568 395 WG 396 (404)
Q Consensus 395 ~g 396 (404)
++
T Consensus 285 ~~ 286 (292)
T KOG0621|consen 285 PS 286 (292)
T ss_pred CC
Confidence 43
No 3
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=3.4e-19 Score=159.07 Aligned_cols=153 Identities=17% Similarity=0.267 Sum_probs=130.0
Q ss_pred CeEEEEeeceecccccCCCCCceEEEEcCCCCCceeEEEEeechhhhHhhhcCCCCeEEEEEeCCCCeEEEEEeccceec
Q 015568 183 SNLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGMGNELFRVRRPFWWIT 262 (404)
Q Consensus 183 d~LlIkQkiEllEv~tgfE~~NrY~I~d~~~~Gq~Vy~a~EeS~~~~R~ccg~~RpF~m~I~D~~G~eV~tI~RPf~c~~ 262 (404)
++++++|+. +...|.|.|+|.. |+.+|++.+.--. -+=++.|+|+.|..++.|+.|+....
T Consensus 6 ~tl~mkQk~--------~~~gd~f~I~d~d--gE~af~VeGs~f~---------i~dtlti~Da~G~~l~~i~~kll~l~ 66 (159)
T COG4894 6 ITLFMKQKM--------FSFGDAFHIYDRD--GEEAFKVEGSFFS---------IGDTLTITDASGKTLVSIEQKLLSLL 66 (159)
T ss_pred HhHhhhhhh--------hhcccceEEECCC--CcEEEEEeeeEEe---------eCceEEEEecCCCChHHHHHHHhhcc
Confidence 467788887 4558999999999 9999999754211 13358889999999999999999888
Q ss_pred eeEEEeeCCeEEEEEEeeecceeeEEEEEeCCcceEEEECCCeeeeeeEEEcCCCCEEEEEEeeeccccceeeccCceEE
Q 015568 263 SSIYAEINGKEVGVVHRRWHLWRRVYDLYLGNKQFAVVENPGFWNWTFTLKDENGEVLAQIDRDWRGFGFEIFTDAGQYV 342 (404)
Q Consensus 263 ~~c~vE~~G~~IG~V~Q~wsl~~pkF~I~D~ngq~v~I~GP~c~d~~F~I~d~dG~~VG~IsKkW~G~~rE~FTdaDnY~ 342 (404)
+++.++.+|..+..|+++.++++++|.|-..+ +.|+|+ +|+.+|++.|. ++++++|+|+| |...|+|.
T Consensus 67 ~~yeI~d~~g~~~~vrKK~tf~Rdk~e~d~~~---~eihGN-i~d~efkl~dg-~~~~aeVsKkw-------f~~rdTY~ 134 (159)
T COG4894 67 PRYEISDGGGTVCEVRKKVTFSRDKFEIDGLN---WEIHGN-IWDDEFKLTDG-ENVRAEVSKKW-------FSWRDTYH 134 (159)
T ss_pred ceeEEEcCCCCEEEEEEEEEEEeeeEEEcCCC---eEEecc-eeceEEEEecC-Cceehhheeee-------EeccceEE
Confidence 99988876666999999999999999994444 899999 89999999974 55999999999 89999999
Q ss_pred EEEccCCCCCccccchhhhhccccCCCChhHHHHHHHHHHhhhhhhh
Q 015568 343 IRFGSADPSSKTGLASVIQELEVTRPLTLSERAVAVALAISLDNDYF 389 (404)
Q Consensus 343 I~Fp~~~~~~~~~~~~~~~dldV~rpLdle~KAlLLgAaIlIDymyF 389 (404)
++|.++ +.++++++.|++||+|.+
T Consensus 135 l~vapd-----------------------e~a~lii~i~VaLD~v~~ 158 (159)
T COG4894 135 LQVAPD-----------------------EDALLIIAIAVALDMVLY 158 (159)
T ss_pred EEEcCc-----------------------hhhHHHHHHHHHHHHHhc
Confidence 999764 568999999999999965
No 4
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=99.57 E-value=5.1e-14 Score=129.57 Aligned_cols=143 Identities=20% Similarity=0.320 Sum_probs=73.7
Q ss_pred eEEEEeeceecccccCCCCCceEEEEcCCCCCceeEEEEe-echhhhHhhhcCCCCeEEEEEeCCCCeEEEEEeccceec
Q 015568 184 NLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIRE-QSNVIARQLLRLRRPFVAYITDGMGNELFRVRRPFWWIT 262 (404)
Q Consensus 184 ~LlIkQkiEllEv~tgfE~~NrY~I~d~~~~Gq~Vy~a~E-eS~~~~R~ccg~~RpF~m~I~D~~G~eV~tI~RPf~c~~ 262 (404)
.|.|+++.-. -..+.|.|+|+. |+.+|.+.. .-..+ +-++.|+|..|++|++|+|......
T Consensus 15 ~l~v~~k~~~-------~~~~~f~V~D~~--G~~vf~V~g~~~~s~---------~~~~~l~D~~G~~L~~i~~k~~~l~ 76 (187)
T PF04525_consen 15 TLTVKKKSLS-------FSGDDFTVYDEN--GNVVFRVDGGKFFSI---------GKKRTLMDASGNPLFTIRRKLFSLR 76 (187)
T ss_dssp EEEEE-----------------EEEEETT--S-EEEEEE--SCTTB---------TTEEEEE-TTS-EEEEEE-------
T ss_pred EEEEEEEEee-------ecCCCEEEEcCC--CCEEEEEEEecccCC---------CCEEEEECCCCCEEEEEEeeecccc
Confidence 4567666531 236899999999 999999988 42222 2289999999999999999755556
Q ss_pred eeEEEeeCCeE-----EEEEEeeecc-eeeEEEEEeC----------CcceEEEECCCeeeeeeEEEcCCCCEEEEEEee
Q 015568 263 SSIYAEINGKE-----VGVVHRRWHL-WRRVYDLYLG----------NKQFAVVENPGFWNWTFTLKDENGEVLAQIDRD 326 (404)
Q Consensus 263 ~~c~vE~~G~~-----IG~V~Q~wsl-~~pkF~I~D~----------ngq~v~I~GP~c~d~~F~I~d~dG~~VG~IsKk 326 (404)
+.+.++.+|.. +++|++.+.+ .+..+.++.. .+..+.|+|. +++++|+|+|.+|+.||+|+++
T Consensus 77 ~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~-~~~~~~~I~~~~g~~VA~i~rk 155 (187)
T PF04525_consen 77 PTWEIYRGGGSEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGN-FWDRSFTIYDSGGRVVAEISRK 155 (187)
T ss_dssp -EEEEEETT---GGGEEEEEE----------EEEEET--T----------SEEEES--TTTT--EEEECC--EEEEEEE-
T ss_pred eEEEEEECCCCccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEE-ecCcEEEEEEcCCCEEEEEecc
Confidence 77877765554 9999998332 2344444443 2224699999 8999999998788999999988
Q ss_pred eccccceeeccCceEEEEEcc
Q 015568 327 WRGFGFEIFTDAGQYVIRFGS 347 (404)
Q Consensus 327 W~G~~rE~FTdaDnY~I~Fp~ 347 (404)
|. .++++...|+|.|+..|
T Consensus 156 ~~--~k~~~~~~dty~l~V~p 174 (187)
T PF04525_consen 156 YS--SKKWFSGRDTYTLTVAP 174 (187)
T ss_dssp -----------B-SEEEEE-T
T ss_pred cc--eeeEEecCcEEEEEEcC
Confidence 87 67889999999999975
No 5
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=97.25 E-value=0.001 Score=62.58 Aligned_cols=73 Identities=23% Similarity=0.350 Sum_probs=48.1
Q ss_pred CceEEEEcCCCCCceeEEEEeechhhhHhhhcCCCCeEEEEEeCCCCeEEEEEeccceeceeEE----E-eeCCeEEEEE
Q 015568 203 ENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGMGNELFRVRRPFWWITSSIY----A-EINGKEVGVV 277 (404)
Q Consensus 203 ~NrY~I~d~~~~Gq~Vy~a~EeS~~~~R~ccg~~RpF~m~I~D~~G~eV~tI~RPf~c~~~~c~----v-E~~G~~IG~V 277 (404)
..+..|.++. |+.|+++.+.-.+|.+ +++|+|..|+++++|+.|+.++.||.. + ..+|+.||.|
T Consensus 105 ~~~~~V~~p~--g~~iG~I~q~~~~~~~---------~f~I~d~~~~~~~~I~gp~~~~~~~~~~~F~I~~~~~~~vg~I 173 (221)
T PF03803_consen 105 LQEMEVESPP--GNLIGSIRQPFSCCRP---------NFDIFDANGNPIFTIKGPCCCCSCCCDWEFEIKDPNGQEVGSI 173 (221)
T ss_pred ceeEEEecCC--CcEEEEEEEcCcccce---------EEEEEECCCceEEEEeCCcceeccccceeeeeecccCcEEEEE
Confidence 3566677776 8888888776555433 577888888888888888654332221 1 2367888888
Q ss_pred Eeeecceee
Q 015568 278 HRRWHLWRR 286 (404)
Q Consensus 278 ~Q~wsl~~p 286 (404)
.++|.-+..
T Consensus 174 ~k~w~G~~~ 182 (221)
T PF03803_consen 174 TKKWSGFCR 182 (221)
T ss_pred EEecCCcch
Confidence 888876544
No 6
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=95.58 E-value=0.04 Score=50.87 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=13.0
Q ss_pred CCeEEEEEEe-eecceeeEEEEEeCCcceE-EEEC
Q 015568 270 NGKEVGVVHR-RWHLWRRVYDLYLGNKQFA-VVEN 302 (404)
Q Consensus 270 ~G~~IG~V~Q-~wsl~~pkF~I~D~ngq~v-~I~G 302 (404)
+|+++-+|.. ++.-++.+..|+|.+|+.+ +|+-
T Consensus 36 ~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~ 70 (187)
T PF04525_consen 36 NGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRR 70 (187)
T ss_dssp TS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE-
T ss_pred CCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEe
Confidence 4444444444 4444444444555444443 4433
No 7
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=0.015 Score=53.04 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=17.7
Q ss_pred EEeeecceeeEEEEEeCCcceE-EEECC
Q 015568 277 VHRRWHLWRRVYDLYLGNKQFA-VVENP 303 (404)
Q Consensus 277 V~Q~wsl~~pkF~I~D~ngq~v-~I~GP 303 (404)
++|+..+++-.|.|+|++|+.+ .|+|.
T Consensus 10 mkQk~~~~gd~f~I~d~dgE~af~VeGs 37 (159)
T COG4894 10 MKQKMFSFGDAFHIYDRDGEEAFKVEGS 37 (159)
T ss_pred hhhhhhhcccceEEECCCCcEEEEEeee
Confidence 4566666666677777666665 66666
No 8
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=90.75 E-value=1.6 Score=44.00 Aligned_cols=48 Identities=27% Similarity=0.291 Sum_probs=37.0
Q ss_pred EEEEEeCCCCeEEEEEeccceeceeEE------E-eeCCeEEEEEEeeecceeeE
Q 015568 240 VAYITDGMGNELFRVRRPFWWITSSIY------A-EINGKEVGVVHRRWHLWRRV 287 (404)
Q Consensus 240 ~m~I~D~~G~eV~tI~RPf~c~~~~c~------v-E~~G~~IG~V~Q~wsl~~pk 287 (404)
+.+|.|..++.++.|+.|..|.++||. + ..+|..+|.|.++|..+.+.
T Consensus 189 ~f~i~~~~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~~rE 243 (292)
T KOG0621|consen 189 NFHLWDRDGNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGLVRE 243 (292)
T ss_pred eEEEEcccceeEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeecccchhhh
Confidence 577888889999999999666555552 1 12788999999999887654
No 9
>PF08515 TGF_beta_GS: Transforming growth factor beta type I GS-motif; InterPro: IPR003605 Transforming growth factor beta (TGF-beta) is a member of a large family of secreted growth factors of central importance in eukaryotic development and homeostasis. Members of this family, which includes the activins, inhibins and bone morphogenic proteins (BMPs), bind to receptors that consist of two transmembrane serine/threonine (Ser/Thr) kinases called the type I and type II receptors. Type II activates Type I upon formation of the ligand receptor complex by multiply phosphorylating the GS domain, a short (~30 residues), highly conserved regulatory sequence just N-terminal to the kinase domain on the cytoplasmic side of the receptor. The GS domain is found only in the type I receptor family and is named for the TTSGSGSG sequence at its core. At least three, and perhaps four to five of the serines and threonines in the GS domain, must be phosphorylated to fully activate TbetaR-1 []. The GS domain forms a helix-loop-helix structure in which the sites of activating phosphorylation are situated in a loop known as the GS loop. One key role for phosphorylation is to block the adoption of an inactivating configuration by the GS domain [].; GO: 0004675 transmembrane receptor protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0016020 membrane; PDB: 3MY0_H 3Q4U_B 3H9R_A 3MTF_B 3OOM_A 3KCF_C 3FAA_A 1IAS_A 1PY5_A 2X7O_C ....
Probab=28.63 E-value=31 Score=23.63 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=11.3
Q ss_pred hhhh--hccCCCCCCCccc
Q 015568 385 DNDY--FSRHGGWGIPFVA 401 (404)
Q Consensus 385 Dymy--FE~~~~~g~~~~~ 401 (404)
|++. -...+|.|+|+|+
T Consensus 5 dl~~~~~tSGSGSGlplLv 23 (29)
T PF08515_consen 5 DLLEDSSTSGSGSGLPLLV 23 (29)
T ss_dssp HHHHHHHCCTSSSSS-HHH
T ss_pred HHhhccccCCCCCCchhhh
Confidence 4444 4456899999986
No 10
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=27.36 E-value=1.7e+02 Score=34.07 Aligned_cols=9 Identities=33% Similarity=0.645 Sum_probs=4.3
Q ss_pred chhhhhhhc
Q 015568 58 LTDSVLERS 66 (404)
Q Consensus 58 ~~~~~~~~~ 66 (404)
+||-|+-+.
T Consensus 432 ISqIvlHr~ 440 (1102)
T KOG1924|consen 432 ISQIVLHRT 440 (1102)
T ss_pred HHHHHHhcC
Confidence 445555443
No 11
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=22.18 E-value=1e+02 Score=35.67 Aligned_cols=8 Identities=13% Similarity=-0.151 Sum_probs=3.3
Q ss_pred CCCCCccC
Q 015568 131 RPFGRWFS 138 (404)
Q Consensus 131 ~~~~~~~~ 138 (404)
-|+|--.+
T Consensus 527 iP~PP~~p 534 (1102)
T KOG1924|consen 527 IPPPPPLP 534 (1102)
T ss_pred CCCCCCCC
Confidence 34444444
No 12
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=22.09 E-value=1.8e+02 Score=23.81 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=20.1
Q ss_pred eEEEEEeCCcceEEEECCCeeeeeeEEEcCCCCEE
Q 015568 286 RVYDLYLGNKQFAVVENPGFWNWTFTLKDENGEVL 320 (404)
Q Consensus 286 pkF~I~D~ngq~v~I~GP~c~d~~F~I~d~dG~~V 320 (404)
-.|+|.|.....+++.=+.=...+|.|+|.+|++|
T Consensus 4 ~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~v 38 (82)
T PF12690_consen 4 FTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEV 38 (82)
T ss_dssp EEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EE
T ss_pred EEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEE
Confidence 46778888777777764433578999998887755
Done!