Query 015568
Match_columns 404
No_of_seqs 175 out of 613
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 14:52:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015568.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015568hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 99.9 1.8E-24 6E-29 201.5 18.2 172 177-393 31-216 (217)
2 1zxu_A AT5G01750 protein; PFAM 95.5 0.033 1.1E-06 51.2 7.8 94 248-347 36-137 (217)
3 2v2f_A Penicillin binding prot 11.0 1.4E+02 0.0047 18.0 1.9 15 240-254 6-20 (26)
4 3b42_A GSU0935, methyl-accepti 10.8 3.6E+02 0.012 22.2 5.2 71 204-282 48-125 (135)
5 2hxj_A Hypothetical protein; A 8.1 88 0.003 27.5 0.2 78 29-112 44-125 (144)
6 3bid_A UPF0339 protein NMB1088 7.9 2.6E+02 0.0089 21.0 2.8 20 307-327 12-31 (64)
7 3c5n_A Tubby-related protein 1 7.8 8.3E+02 0.028 22.7 6.9 23 270-294 73-95 (246)
8 2fim_A Tubby related protein 1 7.5 7.6E+02 0.026 23.5 6.6 23 270-294 97-119 (276)
9 2f1e_A Protein APAG; APAG prot 7.5 3.1E+02 0.011 23.2 3.4 26 280-305 44-69 (127)
10 3isy_A Bsupi, intracellular pr 7.3 5.8E+02 0.02 21.3 5.0 32 287-318 23-54 (120)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=99.92 E-value=1.8e-24 Score=201.51 Aligned_cols=172 Identities=14% Similarity=0.170 Sum_probs=121.5
Q ss_pred hhhh-CCCeEEEEeeceecccccCCCCCceEEEEcCCCCCceeEEEEeechhhhHhhhcCCCCeEEEEEeCCCCeEEEEE
Q 015568 177 APLL-ARSNLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGMGNELFRVR 255 (404)
Q Consensus 177 e~Ll-~ld~LlIkQkiEllEv~tgfE~~NrY~I~d~~~~Gq~Vy~a~EeS~~~~R~ccg~~RpF~m~I~D~~G~eV~tI~ 255 (404)
+++. .-..|+|+|++..+ ..|+|.|+|++ |+.||++.++. + .++++++|+|+.|++|++|+
T Consensus 31 ~~~~~~~~~l~vkqk~~~~-------~~~~f~V~D~~--G~~vf~V~~~~-~--------~~~~~~~l~D~~G~~l~~i~ 92 (217)
T 1zxu_A 31 KYCAPYPIDMAIVRKMMSL-------TDGNFVITDVN--GNLLFKVKEPV-F--------GLHDKRVLLDGSGTPVVTLR 92 (217)
T ss_dssp GGBCSSCEEEEEECC------------CCCEEEEETT--SCEEEEEECSS-T--------TCCSEEEEECTTSCEEEEEE
T ss_pred cccCCCCcEEEEEEEEeEe-------eCCCEEEEeCC--CCEEEEEEccc-c--------CCCCEEEEECCCCCEEEEEE
Confidence 4555 46678999997543 25799999999 99999998863 1 36889999999999999999
Q ss_pred eccceeceeEEEeeCC-----eEEEEEEee--ecceeeEEEEEeCCc-----ceEEEECCCeeeeeeEEEcCC-CCEEEE
Q 015568 256 RPFWWITSSIYAEING-----KEVGVVHRR--WHLWRRVYDLYLGNK-----QFAVVENPGFWNWTFTLKDEN-GEVLAQ 322 (404)
Q Consensus 256 RPf~c~~~~c~vE~~G-----~~IG~V~Q~--wsl~~pkF~I~D~ng-----q~v~I~GP~c~d~~F~I~d~d-G~~VG~ 322 (404)
|+..++.+++.++.++ +++|+|+++ |+ ++++|+|.+.++ ..+.|+|+ +++++|+|++.+ |++||+
T Consensus 93 rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~-~~~~~~V~~~~~~~~~~~~~~I~G~-~~~~~f~I~~~~~~~~Va~ 170 (217)
T 1zxu_A 93 EKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQ-LKTKLDVFLGHNKDEKRCDFRVKGS-WLERSCVVYAGESDAIVAQ 170 (217)
T ss_dssp C------CEEEEEETTCCCGGGEEEEEEC--------CCEEEEETTCCC-CCCSEEEESC-TTTTCCEEEETTTCCEEEE
T ss_pred ccccccCcEEEEEcCCCCCCCcEEEEEEEecccc-CCCeEEEEECCCCCCCceEEEEEEe-EeCCEEEEEECCCCEEEEE
Confidence 9977666666665432 479999998 88 899999998752 24699999 789999999987 689999
Q ss_pred EEeeeccccceeeccCceEEEEEccCCCCCccccchhhhhccccCCCChhHHHHHHHHHHhhhhhhhccCC
Q 015568 323 IDRDWRGFGFEIFTDAGQYVIRFGSADPSSKTGLASVIQELEVTRPLTLSERAVAVALAISLDNDYFSRHG 393 (404)
Q Consensus 323 IsKkW~G~~rE~FTdaDnY~I~Fp~~~~~~~~~~~~~~~dldV~rpLdle~KAlLLgAaIlIDymyFE~~~ 393 (404)
|+|+|. .+++|+++|+|.|+++++ +| .+++||++++||+|++++++
T Consensus 171 I~kk~~--~~~~~~~~D~y~l~V~p~--------------------~D---~aliialvv~iD~~~~~~~~ 216 (217)
T 1zxu_A 171 MHRKHT--VQSVFLGKDNFSVTVYPN--------------------VD---YAFIASLVVILDDVNREDRA 216 (217)
T ss_dssp EEEC----------CBCSEEEEECTT--------------------SB---HHHHHHHHHHHHHHHC----
T ss_pred EEeeee--ccccccCCcEEEEEECCC--------------------CC---HHHHHHHHHHHHHhhhhccC
Confidence 999997 689999999999999752 22 49999999999999998753
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=95.51 E-value=0.033 Score=51.17 Aligned_cols=94 Identities=11% Similarity=0.022 Sum_probs=60.1
Q ss_pred CCeEEEEEeccceece-eEEE-eeCCeEEEEEEeeecceeeEEEEEeCCcceE-EEECCCe-eeeeeEEEcCCCC----E
Q 015568 248 GNELFRVRRPFWWITS-SIYA-EINGKEVGVVHRRWHLWRRVYDLYLGNKQFA-VVENPGF-WNWTFTLKDENGE----V 319 (404)
Q Consensus 248 G~eV~tI~RPf~c~~~-~c~v-E~~G~~IG~V~Q~wsl~~pkF~I~D~ngq~v-~I~GP~c-~d~~F~I~d~dG~----~ 319 (404)
+...++|++...-+.+ .+.+ +.+|+.+.+|...+..++.++.|+|.+|+.+ +|+-+.+ +.-.|+|.+.++. .
T Consensus 36 ~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~rk~~~~~~~~~v~~~~~~~~~~~ 115 (217)
T 1zxu_A 36 YPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDL 115 (217)
T ss_dssp SCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCEEEEEEC------CEEEEEETTCCCGGGE
T ss_pred CCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCEEEEEEccccccCcEEEEEcCCCCCCCcE
Confidence 5577888876433233 4544 3589999999998777888999999999876 8877632 3456788876654 6
Q ss_pred EEEEEeeeccccceeeccCceEEEEEcc
Q 015568 320 LAQIDRDWRGFGFEIFTDAGQYVIRFGS 347 (404)
Q Consensus 320 VG~IsKkW~G~~rE~FTdaDnY~I~Fp~ 347 (404)
+|+|+|++. |+....|.|.++.
T Consensus 116 i~~vrk~~~------~~~~~~~~V~~~~ 137 (217)
T 1zxu_A 116 LYTVKRSSM------LQLKTKLDVFLGH 137 (217)
T ss_dssp EEEEEC-------------CCEEEEETT
T ss_pred EEEEEEecc------ccCCCeEEEEECC
Confidence 999999821 1123468898864
No 3
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=10.95 E-value=1.4e+02 Score=18.04 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=11.6
Q ss_pred EEEEEeCCCCeEEEE
Q 015568 240 VAYITDGMGNELFRV 254 (404)
Q Consensus 240 ~m~I~D~~G~eV~tI 254 (404)
.-.|||.+|++|..+
T Consensus 6 ss~IYD~~g~~i~~l 20 (26)
T 2v2f_A 6 SSKIYDNKNQLIADL 20 (26)
T ss_pred CCEEEeCCCCEeeec
Confidence 356889999888766
No 4
>3b42_A GSU0935, methyl-accepting chemotaxis protein, putative; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 1.90A {Geobacter sulfurreducens}
Probab=10.84 E-value=3.6e+02 Score=22.16 Aligned_cols=71 Identities=13% Similarity=0.003 Sum_probs=44.5
Q ss_pred ceEEEEcCCCCCceeEEEEe---echhhhHhhhcCCCCeEEEEEeCCCCeEEEEEeccc----eeceeEEEeeCCeEEEE
Q 015568 204 NRYAVVDVCYPQSPVGFIRE---QSNVIARQLLRLRRPFVAYITDGMGNELFRVRRPFW----WITSSIYAEINGKEVGV 276 (404)
Q Consensus 204 NrY~I~d~~~~Gq~Vy~a~E---eS~~~~R~ccg~~RpF~m~I~D~~G~eV~tI~RPf~----c~~~~c~vE~~G~~IG~ 276 (404)
-.-.|+++. | .+| ... ..+-+.++-+...++... ..+..|..++++-.|+. |..|+ .. .|.++|.
T Consensus 48 ~~irI~r~~--g-~~f-g~~~~~~~d~~~~~al~~~~~~~~-~~~~~g~~~l~~~~Pi~a~~~Cl~CH--~~-~g~VLG~ 119 (135)
T 3b42_A 48 MDLRVFDEQ--A-KEV-SPTPSQTPNAKIQQAIAAGRTLEF-KETLDGKRTLSLVLPFPNEQRCQSCH--DA-GAAYLGG 119 (135)
T ss_dssp CEEEEEETT--S-BEE-ESSCCSSBCHHHHHHHHHTSCEEE-EEEETTEEEEEEEEEEECCGGGGGTS--CT-TCSEEEE
T ss_pred eEEEEECCh--h-hhc-CCCcccCCCHHHHHHHhcCCceEE-EEcCCCcEEEEEEEecccCcChHhhc--CC-CCeeEEE
Confidence 356678877 6 555 221 134456666644466665 55667777899999974 54333 22 8999998
Q ss_pred EEeeec
Q 015568 277 VHRRWH 282 (404)
Q Consensus 277 V~Q~ws 282 (404)
|.=..+
T Consensus 120 l~v~~s 125 (135)
T 3b42_A 120 LLVTTS 125 (135)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 865433
No 5
>2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.21A {Neisseria meningitidis MC58} PDB: 3mw6_A
Probab=8.05 E-value=88 Score=27.54 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=49.5
Q ss_pred hhhhhccccccccccchhhhhhhhhccccchhhhhhhcceecccccccccccccccCCCCCcccC---HHHHHH-HhHhH
Q 015568 29 FKTLKLGVFQPEYFSTMSLQHLERFGTNGLTDSVLERSLVYRYKGSFFQSKRCFGHDVRGDAQLN---RDFLVQ-LWISD 104 (404)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~ 104 (404)
+|-||+|+|+-- ++++..|+...|..|+..--..+|+-.....|..+|.-.+...-.|+ ++.-.+ |++.+
T Consensus 44 ~kPLKIGI~qDL------~a~l~~lsk~~LR~ALr~yt~s~rYL~al~~Ga~R~DLdG~p~GeVT~Eea~~A~~~l~l~e 117 (144)
T 2hxj_A 44 FKPLALGIDQDL------IAALPQYDAALIARVLANHCRRPRYLKALARGGKRFDLNNRFKGEVTPEEQAIAQNHPFVQQ 117 (144)
T ss_dssp TCCBCTTHHHHH------HHHCTTSCHHHHHHHHHHHHHSHHHHHHHHHCCEEECTTSCEEEECCHHHHHHHHHCHHHHH
T ss_pred CCCccccHHHHH------HHHhhccCHHHHHHHHHHHHCCHHHHHHHHCCCeeECCCCCCCCcCCHHHHHHHHHhHHHHH
Confidence 899999999732 45666777888888877766667777666667667765544433344 444433 67777
Q ss_pred HhhcchHH
Q 015568 105 RRRQSSRE 112 (404)
Q Consensus 105 ~~~~~~~~ 112 (404)
.+.+....
T Consensus 118 ~~~k~~~~ 125 (144)
T 2hxj_A 118 ALQQQSAQ 125 (144)
T ss_dssp HHCC----
T ss_pred HHHHHHHH
Confidence 76555444
No 6
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=7.85 E-value=2.6e+02 Score=21.00 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=15.3
Q ss_pred eeeeEEEcCCCCEEEEEEeee
Q 015568 307 NWTFTLKDENGEVLAQIDRDW 327 (404)
Q Consensus 307 d~~F~I~d~dG~~VG~IsKkW 327 (404)
.|-|.++..||++|+ -+.-+
T Consensus 12 ~frfrLka~NGevI~-sSe~Y 31 (64)
T 3bid_A 12 EYRWRLKAANHEIIA-QGEGY 31 (64)
T ss_dssp CEEEEEECTTSCEEE-ECCCB
T ss_pred CEEEEEEeCCCCEEE-ECCCc
Confidence 468899999999998 44434
No 7
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=7.80 E-value=8.3e+02 Score=22.70 Aligned_cols=23 Identities=9% Similarity=0.252 Sum_probs=17.7
Q ss_pred CCeEEEEEEeeecceeeEEEEEeCC
Q 015568 270 NGKEVGVVHRRWHLWRRVYDLYLGN 294 (404)
Q Consensus 270 ~G~~IG~V~Q~wsl~~pkF~I~D~n 294 (404)
.+..||.++. .+++.+|+|+|..
T Consensus 73 s~~yvGKLrs--Nf~Gt~F~iyD~g 95 (246)
T 3c5n_A 73 GENFIGKLRS--NLLGNRFTVFDNG 95 (246)
T ss_dssp --CEEEEEEE--CSSSSEEEEECSC
T ss_pred CceEEEEEEE--ccCCCEEEEECCC
Confidence 4679999976 4778999999974
No 8
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=7.53 E-value=7.6e+02 Score=23.45 Aligned_cols=23 Identities=9% Similarity=0.252 Sum_probs=17.6
Q ss_pred CCeEEEEEEeeecceeeEEEEEeCC
Q 015568 270 NGKEVGVVHRRWHLWRRVYDLYLGN 294 (404)
Q Consensus 270 ~G~~IG~V~Q~wsl~~pkF~I~D~n 294 (404)
.+..||.++. .+++.+|+|+|..
T Consensus 97 s~~yvGKLrS--NflGtkF~iyD~G 119 (276)
T 2fim_A 97 GENFIGKLRS--NLLGNRFTVFDNG 119 (276)
T ss_dssp --CEEEEEEE--CSSSSEEEEECSS
T ss_pred CceEEEEEEE--ccCCCEEEEECCC
Confidence 5679999976 4778999999864
No 9
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=7.47 E-value=3.1e+02 Score=23.20 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=21.1
Q ss_pred eecceeeEEEEEeCCcceEEEECCCe
Q 015568 280 RWHLWRRVYDLYLGNKQFAVVENPGF 305 (404)
Q Consensus 280 ~wsl~~pkF~I~D~ngq~v~I~GP~c 305 (404)
...+..+...|.|++|+.-.|+|++.
T Consensus 44 ~vQL~sRhW~Itd~~g~~~eV~G~GV 69 (127)
T 2f1e_A 44 PARLVARHWQITDGNGRTEQVDGEGV 69 (127)
T ss_dssp CEEEEEEEEEEEETTSCEEEEEESSB
T ss_pred CEEEEeceEEEEeCCCCEEEEECCCe
Confidence 34567788999999998778999974
No 10
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=7.25 E-value=5.8e+02 Score=21.32 Aligned_cols=32 Identities=6% Similarity=-0.036 Sum_probs=13.9
Q ss_pred EEEEEeCCcceEEEECCCeeeeeeEEEcCCCC
Q 015568 287 VYDLYLGNKQFAVVENPGFWNWTFTLKDENGE 318 (404)
Q Consensus 287 kF~I~D~ngq~v~I~GP~c~d~~F~I~d~dG~ 318 (404)
.++|.|.....+.++=+.=...+|.|+|.+|+
T Consensus 23 ~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~ 54 (120)
T 3isy_A 23 NMSLKNQSERAIEFQFSTGQKFELVVYDSEHK 54 (120)
T ss_dssp EEEEEECSSSCEEEEESSSCCEEEEEECTTCC
T ss_pred EEEEEcCCCCcEEEEeCCCCEEEEEEECCCCC
Confidence 34444444444433322113445666655554
Done!