Query 015569
Match_columns 404
No_of_seqs 300 out of 985
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:32:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 1.9E-56 4.1E-61 433.1 23.8 270 85-395 47-341 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 8E-52 1.7E-56 387.1 14.5 191 121-321 1-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 5.7E-48 1.2E-52 358.6 21.0 171 137-324 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 98.9 4.2E-07 9.2E-12 91.1 21.9 241 113-369 1-288 (314)
5 PF14592 Chondroitinas_B: Chon 98.2 2.7E-05 5.8E-10 80.9 14.3 165 112-282 6-214 (425)
6 PLN02218 polygalacturonase ADP 98.0 0.00011 2.5E-09 76.8 15.6 123 161-304 217-343 (431)
7 PF13229 Beta_helix: Right han 97.9 0.00014 3E-09 62.7 11.1 133 161-325 2-138 (158)
8 PLN03003 Probable polygalactur 97.8 0.00039 8.5E-09 73.2 15.2 83 201-287 186-269 (456)
9 PF05048 NosD: Periplasmic cop 97.8 0.0011 2.3E-08 63.0 15.6 136 204-358 80-218 (236)
10 PLN02188 polygalacturonase/gly 97.7 0.00094 2E-08 69.5 15.9 99 159-276 178-277 (404)
11 PLN02793 Probable polygalactur 97.7 0.00083 1.8E-08 70.7 15.0 106 160-286 201-307 (443)
12 PLN02155 polygalacturonase 97.7 0.00099 2.1E-08 69.1 14.9 99 159-276 168-267 (394)
13 PF00295 Glyco_hydro_28: Glyco 97.7 0.00058 1.3E-08 68.7 12.6 133 119-286 89-222 (326)
14 TIGR03805 beta_helix_1 paralle 97.5 0.0037 8E-08 62.9 16.0 158 142-305 62-246 (314)
15 PLN03010 polygalacturonase 97.4 0.0087 1.9E-07 62.5 16.9 99 201-303 205-307 (409)
16 PF13229 Beta_helix: Right han 97.3 0.003 6.6E-08 54.3 11.1 131 159-321 23-158 (158)
17 TIGR03808 RR_plus_rpt_1 twin-a 97.3 0.011 2.3E-07 62.2 16.9 101 112-229 56-162 (455)
18 PLN02218 polygalacturonase ADP 97.3 0.013 2.7E-07 61.7 17.4 86 161-276 194-284 (431)
19 PF12708 Pectate_lyase_3: Pect 97.2 0.0093 2E-07 54.9 13.6 39 113-152 21-62 (225)
20 PF01696 Adeno_E1B_55K: Adenov 97.1 0.034 7.4E-07 57.5 18.2 175 113-326 57-242 (386)
21 PF05048 NosD: Periplasmic cop 97.0 0.013 2.8E-07 55.6 13.3 130 159-322 35-166 (236)
22 PLN03003 Probable polygalactur 96.8 0.024 5.3E-07 59.9 13.7 118 122-275 104-229 (456)
23 PLN02155 polygalacturonase 96.7 0.031 6.7E-07 58.1 13.9 117 123-276 107-237 (394)
24 PF00295 Glyco_hydro_28: Glyco 96.6 0.023 4.9E-07 57.3 11.7 107 140-276 63-184 (326)
25 PLN02197 pectinesterase 96.6 0.04 8.7E-07 60.0 14.1 137 65-230 244-410 (588)
26 PLN03010 polygalacturonase 96.5 0.055 1.2E-06 56.6 14.2 89 161-277 159-252 (409)
27 PLN02480 Probable pectinestera 96.5 0.059 1.3E-06 55.1 14.1 118 112-247 62-197 (343)
28 smart00656 Amb_all Amb_all dom 96.4 0.14 3E-06 48.0 14.7 135 142-300 44-188 (190)
29 PLN02793 Probable polygalactur 96.3 0.082 1.8E-06 55.8 14.2 108 139-276 145-269 (443)
30 TIGR03808 RR_plus_rpt_1 twin-a 96.2 0.064 1.4E-06 56.5 12.6 159 144-323 121-332 (455)
31 PF07602 DUF1565: Protein of u 96.2 0.26 5.6E-06 48.3 15.9 117 112-247 17-162 (246)
32 PLN02188 polygalacturonase/gly 95.8 0.15 3.2E-06 53.3 13.0 117 123-275 114-246 (404)
33 PLN02682 pectinesterase family 95.6 0.66 1.4E-05 48.0 16.6 119 112-248 84-229 (369)
34 PF00544 Pec_lyase_C: Pectate 95.0 0.33 7.1E-06 45.8 11.5 118 157-298 73-200 (200)
35 PLN02176 putative pectinestera 95.0 0.49 1.1E-05 48.5 13.5 119 112-247 53-188 (340)
36 COG5434 PGU1 Endopygalactoruna 94.8 0.25 5.4E-06 53.4 11.3 102 161-286 263-375 (542)
37 PLN02708 Probable pectinestera 94.5 0.46 1E-05 51.6 12.5 115 112-246 255-409 (553)
38 COG3420 NosD Nitrous oxidase a 94.4 0.55 1.2E-05 48.1 11.9 93 139-247 100-192 (408)
39 PLN02416 probable pectinestera 94.3 0.47 1E-05 51.4 12.0 99 112-230 244-363 (541)
40 PLN02170 probable pectinestera 94.1 0.56 1.2E-05 50.6 12.1 100 112-230 239-359 (529)
41 PLN02432 putative pectinestera 93.9 0.69 1.5E-05 46.5 11.5 113 112-248 25-154 (293)
42 COG3420 NosD Nitrous oxidase a 93.7 0.69 1.5E-05 47.4 11.0 133 137-290 45-197 (408)
43 PLN02301 pectinesterase/pectin 93.2 0.88 1.9E-05 49.4 11.7 102 109-229 244-368 (548)
44 PLN02773 pectinesterase 93.0 1.4 3.1E-05 44.7 12.2 113 112-247 19-162 (317)
45 PLN02488 probable pectinestera 92.9 1.2 2.7E-05 47.8 12.1 99 112-229 211-329 (509)
46 PLN02506 putative pectinestera 92.7 1 2.3E-05 48.8 11.3 100 112-230 246-365 (537)
47 PLN03043 Probable pectinestera 92.6 1.6 3.5E-05 47.4 12.6 115 112-246 237-392 (538)
48 PLN02304 probable pectinestera 92.4 2.1 4.5E-05 44.6 12.6 120 112-248 89-228 (379)
49 PLN02217 probable pectinestera 92.3 1.4 3.1E-05 48.9 11.9 166 112-299 264-484 (670)
50 PLN02916 pectinesterase family 92.2 1.7 3.7E-05 46.7 12.2 100 112-230 201-323 (502)
51 PLN02745 Putative pectinestera 92.2 1.7 3.7E-05 47.7 12.4 100 112-230 299-418 (596)
52 PLN02314 pectinesterase 92.2 1.3 2.9E-05 48.5 11.4 115 112-245 292-443 (586)
53 PLN02933 Probable pectinestera 92.1 2 4.3E-05 46.6 12.4 100 112-230 232-351 (530)
54 PLN02313 Pectinesterase/pectin 92.0 1.6 3.4E-05 48.0 11.8 116 112-246 289-441 (587)
55 PF14592 Chondroitinas_B: Chon 92.0 1 2.2E-05 47.5 9.9 114 202-326 183-324 (425)
56 PLN02201 probable pectinestera 91.5 2 4.3E-05 46.5 11.7 100 112-230 220-339 (520)
57 PLN02484 probable pectinestera 91.4 2.3 5.1E-05 46.6 12.3 100 112-229 286-405 (587)
58 PLN02713 Probable pectinestera 91.3 2.4 5.1E-05 46.4 12.2 98 112-229 264-385 (566)
59 PLN02634 probable pectinestera 91.3 3.8 8.2E-05 42.4 13.0 118 112-247 70-214 (359)
60 PLN02995 Probable pectinestera 91.1 2.6 5.6E-05 45.8 12.2 113 112-246 237-371 (539)
61 COG5434 PGU1 Endopygalactoruna 90.6 1 2.2E-05 48.9 8.4 144 120-275 236-395 (542)
62 PLN02990 Probable pectinestera 90.5 2.9 6.3E-05 45.7 12.0 99 112-229 273-392 (572)
63 PLN02665 pectinesterase family 90.1 5.5 0.00012 41.3 13.0 118 112-247 82-219 (366)
64 PF01095 Pectinesterase: Pecti 89.5 4 8.7E-05 41.0 11.2 115 112-248 14-148 (298)
65 PLN02497 probable pectinestera 88.9 8.3 0.00018 39.5 13.1 120 112-247 46-182 (331)
66 PLN02468 putative pectinestera 88.8 3.6 7.9E-05 45.0 11.1 99 112-229 272-390 (565)
67 PF04431 Pec_lyase_N: Pectate 86.6 0.43 9.3E-06 36.6 1.7 19 23-41 22-40 (56)
68 PLN02671 pectinesterase 86.2 18 0.00039 37.6 13.8 118 112-247 73-218 (359)
69 PRK10531 acyl-CoA thioesterase 86.0 17 0.00036 38.6 13.6 53 165-230 203-256 (422)
70 COG3866 PelB Pectate lyase [Ca 85.5 5.9 0.00013 40.2 9.5 118 202-324 115-251 (345)
71 PF08480 Disaggr_assoc: Disagg 78.4 26 0.00056 33.3 10.4 88 236-325 2-110 (198)
72 PF03211 Pectate_lyase: Pectat 70.5 37 0.0008 32.8 9.6 55 197-252 90-145 (215)
73 TIGR03804 para_beta_helix para 65.5 9.2 0.0002 26.8 3.4 41 205-247 1-41 (44)
74 PF12708 Pectate_lyase_3: Pect 62.8 12 0.00025 34.2 4.5 39 210-249 183-221 (225)
75 PF07602 DUF1565: Protein of u 55.5 74 0.0016 31.4 8.9 88 141-250 95-190 (246)
76 PF01696 Adeno_E1B_55K: Adenov 52.2 3.1E+02 0.0066 29.0 13.1 97 162-276 139-238 (386)
77 PF12541 DUF3737: Protein of u 50.6 1.2E+02 0.0025 30.6 9.2 30 267-300 195-224 (277)
78 PRK10123 wcaM putative colanic 35.4 71 0.0015 32.7 5.2 53 166-229 266-318 (464)
79 PF07822 Toxin_13: Neurotoxin 34.2 5.5 0.00012 29.6 -2.0 19 58-76 20-38 (55)
80 PF10880 DUF2673: Protein of u 34.1 30 0.00066 26.7 1.9 25 11-35 9-33 (65)
81 PF12541 DUF3737: Protein of u 31.7 66 0.0014 32.2 4.3 15 165-179 16-30 (277)
82 TIGR03804 para_beta_helix para 28.6 1.2E+02 0.0025 21.0 4.1 42 161-224 1-42 (44)
83 PF08480 Disaggr_assoc: Disagg 27.8 5.5E+02 0.012 24.6 10.3 71 211-282 33-112 (198)
84 PRK03174 sspH acid-soluble spo 21.2 1E+02 0.0023 23.9 2.8 18 203-220 13-31 (59)
85 PLN02698 Probable pectinestera 20.1 2E+02 0.0043 31.3 5.7 47 166-229 268-315 (497)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-56 Score=433.13 Aligned_cols=270 Identities=31% Similarity=0.384 Sum_probs=220.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCCCCCCchhHHHHhhcCCCeEEEEccceEEEeC------ceeeeccCeeEeccCcceEEeC
Q 015569 85 NAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLK------EELIMNSFKTIDGRGASVHIAG 158 (404)
Q Consensus 85 ~ttGG~gG~vy~VT~~~D~~~~~p~pGsLR~av~~~~P~~IvF~~~g~I~L~------~~L~v~snkTI~G~ga~~~I~~ 158 (404)
+||||.+|++++|++.+| |..+++..+|.++|.-+.|+|++. .+|.+.|||||.|.+++++|.
T Consensus 47 GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~- 115 (345)
T COG3866 47 GTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV- 115 (345)
T ss_pred CcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE-
Confidence 689999999999999998 899999999996566667899887 467789999999999999999
Q ss_pred CceEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEE-eCCeeEEEeeeeeeC--------CCCCee
Q 015569 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSI-FGGTHIWVDHCSLSN--------CDDGLV 229 (404)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi-~gs~nVWIDHcS~s~--------~~Dgli 229 (404)
|++|.|+.+.|||||||+|++...++ ...|+|+| .+++|||||||+|+. ..||++
T Consensus 116 g~gl~i~~a~NVIirNltf~~~~~~d----------------~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~ 179 (345)
T COG3866 116 GGGLKIRDAGNVIIRNLTFEGFYQGD----------------PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV 179 (345)
T ss_pred eceEEEEeCCcEEEEeeEEEeeccCC----------------CCCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence 77999999999999999999875332 12699999 579999999999999 789999
Q ss_pred eeecCCeeEEEEcceecccCeeeeecCCCCc-cCCCcceEEEEeeeeCCCCcCCCccccCCEEEEEcCeeeCCc--ceee
Q 015569 230 DAIHGSTAITISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWE--MYAI 306 (404)
Q Consensus 230 Dv~~gs~~VTISnn~f~~H~k~~LiG~sd~~-~~d~~~~vTi~~N~f~~~~~~R~Pr~R~G~~HvvNN~y~~w~--~yai 306 (404)
|+++++++||||||+|++|+|.+|+|.+|+. .+|++.+||+||||| +++.||+||+|||++||+||||.... .||+
T Consensus 180 Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~ 258 (345)
T COG3866 180 DIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAI 258 (345)
T ss_pred EeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceEE
Confidence 9999999999999999999999999999984 457889999999999 79999999999999999999999654 4566
Q ss_pred ccCCCceeeeeccEEeCCCCCcccceecccCCCCCccCCCeeeecCceEEeceEEecCCCCC------CCCCCCCCceee
Q 015569 307 GGSANPTINSQGNRFAAPDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTASGAGA------SSSYARASSLGA 380 (404)
Q Consensus 307 gg~~~~~i~~egN~F~~~~~~~~k~vt~~~~~~~~~~~~~~w~s~gd~~~nG~~f~~sg~~~------~~~~~~~~~~~~ 380 (404)
+-+..++|++|+|||+....+...--+++. +.+|.- -.|++|..|+... ...++..|+|++
T Consensus 259 ~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--------~GY~~~-----d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Ytv 325 (345)
T COG3866 259 TIGTSAKIYVENNYFENGSEGLGFLDTKGT--------SGYANQ-----DSGSYLNSSKSMSVRAGGVTWNPSSYYSYTV 325 (345)
T ss_pred eeccceEEEEecceeccCCCCceeeecCCc--------cceEEe-----ccCceecccCCcccccCCccCCCCCCccccc
Confidence 555559999999999997544321112221 122221 2355555555432 235677889999
Q ss_pred CCC-CcccchhcccCC
Q 015569 381 RPS-ALVGPITGSAGA 395 (404)
Q Consensus 381 ~~~-~~v~~~t~~AG~ 395 (404)
+|. .+++.||++||+
T Consensus 326 d~~~dVks~Vt~yAGa 341 (345)
T COG3866 326 DPPEDVKSFVTNYAGA 341 (345)
T ss_pred CChHHhhhhhhccccc
Confidence 965 588889999995
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=8e-52 Score=387.11 Aligned_cols=191 Identities=41% Similarity=0.645 Sum_probs=160.2
Q ss_pred CCeEEEEccceEEEeCceeeeccCeeEeccCcceEEeCCceEEEe-eeceEEEEceEEeecccCCCcccccCCCCcCCcc
Q 015569 121 EPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQ-YVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRT 199 (404)
Q Consensus 121 ~P~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I~~G~gi~i~-~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~ 199 (404)
+|+ ||+++|+|+++.+|.+.|||||+|+|++++|. |.|+.+. +++|||||||+|+++. ++..+...+...
T Consensus 1 ~~~--ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~ 71 (200)
T PF00544_consen 1 EPL--IIKVSGTIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGD 71 (200)
T ss_dssp S-E--EEEEHHCCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECEE------EECSTEEETTEE
T ss_pred CcE--EEEEEeEEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEecc------ccCCcccCCCcc
Confidence 355 55668899999999999999999999999999 6788886 9999999999999841 111121112223
Q ss_pred ccCCCcEEEeCCeeEEEeeeeeeCC--------CCCeeeeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEE
Q 015569 200 VSDGDGVSIFGGTHIWVDHCSLSNC--------DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIA 271 (404)
Q Consensus 200 ~~~~DaIsi~gs~nVWIDHcS~s~~--------~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~ 271 (404)
..++|+|+|++++|||||||+|+|+ .||++|++.++++||||||+|++|+|+||+|++|+...|..+++|||
T Consensus 72 ~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~h 151 (200)
T PF00544_consen 72 SSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFH 151 (200)
T ss_dssp ECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEE
T ss_pred ccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEE
Confidence 4689999999999999999999999 99999999999999999999999999999999988877777999999
Q ss_pred eeeeCCCCcCCCccccCCEEEEEcCeeeCCcceeeccCCCceeeeeccEE
Q 015569 272 FNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRF 321 (404)
Q Consensus 272 ~N~f~~~~~~R~Pr~R~G~~HvvNN~y~~w~~yaigg~~~~~i~~egN~F 321 (404)
|||| .++.+|+||+|+|++|+|||||+++..|+++.++++++++|+|||
T Consensus 152 hN~f-~~~~~R~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 152 HNYF-ANTNSRNPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp S-EE-EEEEE-TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred eEEE-CchhhCCCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 9999 689999999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=5.7e-48 Score=358.60 Aligned_cols=171 Identities=57% Similarity=0.888 Sum_probs=158.5
Q ss_pred ceeeeccCeeEeccCcceEEeCCceEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEeCCeeEEE
Q 015569 137 EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWV 216 (404)
Q Consensus 137 ~~L~v~snkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~gs~nVWI 216 (404)
.+|.+.|||||+|+|+++.|. |.+|+++.++|||||||+|+++.+. + ..++|+|++++++||||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~~-----------~----~~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKPV-----------Y----GSDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCccC-----------C----CCCCCEEEEeCCCeEEE
Confidence 568899999999999999998 7899999999999999999976442 1 14789999999999999
Q ss_pred eeeeeeCC---------CCCeeeeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeCCCCcCCCcccc
Q 015569 217 DHCSLSNC---------DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCR 287 (404)
Q Consensus 217 DHcS~s~~---------~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~Pr~R 287 (404)
|||+|+|. .|+++|++.++++||||||+|.+|+|++|+|++|+...+..++||+|||||. ++.+|+||+|
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~-~~~~R~P~~r 152 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVR 152 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEc-CcccCCCccc
Confidence 99999998 8999999999999999999999999999999998877666899999999995 6999999999
Q ss_pred CCEEEEEcCeeeCCcceeeccCCCceeeeeccEEeCC
Q 015569 288 HGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAP 324 (404)
Q Consensus 288 ~G~~HvvNN~y~~w~~yaigg~~~~~i~~egN~F~~~ 324 (404)
+|++|++||||++|..|+++.++++++++|+|||+..
T Consensus 153 ~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 153 FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 9999999999999999999999999999999999875
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.87 E-value=4.2e-07 Score=91.05 Aligned_cols=241 Identities=16% Similarity=0.220 Sum_probs=132.1
Q ss_pred HHHHhhcCCCe-EEEEccceEEEeCceeeec-cCeeEeccCcc-eEEeC------CceEEEeeeceEEEEceEEeecccC
Q 015569 113 LRYAVIQDEPL-WIIFARDMTIRLKEELIMN-SFKTIDGRGAS-VHIAG------GPCITIQYVTNIIIHGLNIHDCKKG 183 (404)
Q Consensus 113 LR~av~~~~P~-~IvF~~~g~I~L~~~L~v~-snkTI~G~ga~-~~I~~------G~gi~i~~a~NVIIrnL~i~~~~~g 183 (404)
|.+|+.+-+|- +|++. .|+-+++..|.+. +++||.|.+.. ..|.. +-+|.+ .++||-|++|++++...
T Consensus 1 iQ~Ai~~A~~GDtI~l~-~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~~- 77 (314)
T TIGR03805 1 LQEALIAAQPGDTIVLP-EGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTKG- 77 (314)
T ss_pred CHhHHhhCCCCCEEEEC-CCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCCC-
Confidence 35666665554 45554 4677777777775 88888888763 33321 233433 47777777777765321
Q ss_pred CCcccccCCC------CcCCc----cccCCCcEEEeCCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcceecccCeeee
Q 015569 184 GNAMVRDSPR------HFGWR----TVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVML 253 (404)
Q Consensus 184 ~~~~i~~s~~------~~g~~----~~~~~DaIsi~gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~L 253 (404)
++-.++.+.. ...|. ....++||.+..++++-|.+|.++...|--|- ...|++++|++|.+.+-..+..
T Consensus 78 ~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIy-v~~s~~~~v~nN~~~~n~~GI~ 156 (314)
T TIGR03805 78 DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIY-VGQSQNIVVRNNVAEENVAGIE 156 (314)
T ss_pred CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEE-ECCCCCeEEECCEEccCcceEE
Confidence 1111111110 00010 01356888888899999999999888773333 3467889999998876544544
Q ss_pred ecCCCCccCCCcceEEEEeeeeCCCCcC-------CCccccCCEEEEEcCeeeCCc-------c---------eeeccCC
Q 015569 254 LGHSDTYTQDKNMQVTIAFNHFGEGLVQ-------RIPRCRHGYFHVVNNDYTHWE-------M---------YAIGGSA 310 (404)
Q Consensus 254 iG~sd~~~~d~~~~vTi~~N~f~~~~~~-------R~Pr~R~G~~HvvNN~y~~w~-------~---------yaigg~~ 310 (404)
+-.+. ++.+.+|.+..+... -.|.+-...+.|.||.+.+-. . .++-...
T Consensus 157 i~~S~--------~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~ 228 (314)
T TIGR03805 157 IENSQ--------NADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMA 228 (314)
T ss_pred EEecC--------CcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEc
Confidence 44332 456666666332110 011111235677777775321 0 1111122
Q ss_pred CceeeeeccEEeCCCCCcccceeccc-C----CCCCccCCCeeeecCceEEeceEEecCCCCCC
Q 015569 311 NPTINSQGNRFAAPDRAFSKEVTKHE-D----APESEWRNWNWRSEGDLMVNGAFFTASGAGAS 369 (404)
Q Consensus 311 ~~~i~~egN~F~~~~~~~~k~vt~~~-~----~~~~~~~~~~w~s~gd~~~nG~~f~~sg~~~~ 369 (404)
...+.+++|.|..-.....--+.... + ..+..|..+ ..++.+-.|.|...|..+.
T Consensus 229 ~~~v~I~~N~i~~n~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~v~i~~N~~~~~g~~p~ 288 (314)
T TIGR03805 229 NRDVEIFGNVISNNDTANVLISSYHSTGLPDQPPDDGFDPY----PRNISIHDNTFSDGGTNPD 288 (314)
T ss_pred ccceEEECCEEeCCcceeEEEEecccccCCCCCcCCCccCC----CcceEEEccEeecCCCCCC
Confidence 35678899999876543211111110 0 122223332 3677888899988887554
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.20 E-value=2.7e-05 Score=80.91 Aligned_cols=165 Identities=19% Similarity=0.240 Sum_probs=72.5
Q ss_pred hHHHHhhcCCCe-EEEEccceEEEeCceeee------ccCeeEeccCc-ceEEeCCceEEEeeeceEEEEceEEeecccC
Q 015569 112 TLRYAVIQDEPL-WIIFARDMTIRLKEELIM------NSFKTIDGRGA-SVHIAGGPCITIQYVTNIIIHGLNIHDCKKG 183 (404)
Q Consensus 112 sLR~av~~~~P~-~IvF~~~g~I~L~~~L~v------~snkTI~G~ga-~~~I~~G~gi~i~~a~NVIIrnL~i~~~~~g 183 (404)
+|..||.+-.|= +|+++ +|+-+ ..+|.+ ...+||..+.+ .|.|.+..+|++. ++.++|.+|.|++....
T Consensus 6 ~lq~Ai~~a~pGD~I~L~-~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~GL~F~ng~~~ 82 (425)
T PF14592_consen 6 ELQSAIDNAKPGDTIVLA-DGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSGLKFKNGYTP 82 (425)
T ss_dssp HHHHHHHH--TT-EEEE--SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE---
T ss_pred HHHHHHHhCCCCCEEEEC-Cceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeCeEEecCCCC
Confidence 489999764442 33332 45544 224433 34588888743 6777766677776 69999999999986533
Q ss_pred CCcccccCCCC------cC---------Cc-cccCCCcEEE----eCCeeEEEeeeeeeCC-CCCe-eeee-------cC
Q 015569 184 GNAMVRDSPRH------FG---------WR-TVSDGDGVSI----FGGTHIWVDHCSLSNC-DDGL-VDAI-------HG 234 (404)
Q Consensus 184 ~~~~i~~s~~~------~g---------~~-~~~~~DaIsi----~gs~nVWIDHcS~s~~-~Dgl-iDv~-------~g 234 (404)
....|...... +. +. ...+.+...+ -.++|--||||+|..- ..|. +-+. .-
T Consensus 83 ~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~ 162 (425)
T PF14592_consen 83 TGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSI 162 (425)
T ss_dssp TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS---
T ss_pred CCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCcccc
Confidence 22222221100 00 00 0011122333 2356667899999972 2232 2222 12
Q ss_pred CeeEEEEcceec-------ccCeeeeecCCCCccCCCcceEEEEeeeeCCCCcCC
Q 015569 235 STAITISNNFMT-------HHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQR 282 (404)
Q Consensus 235 s~~VTISnn~f~-------~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R 282 (404)
..+-+|.+|+|. +..+++.||.|.....+ -+.++.+|+| ++|.+-
T Consensus 163 ~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlF-e~cdGE 214 (425)
T PF14592_consen 163 ANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLF-ERCDGE 214 (425)
T ss_dssp ----EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EE-EEE-SS
T ss_pred ccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchh-hhcCCc
Confidence 347799999998 34578888887543322 2789999999 666644
No 6
>PLN02218 polygalacturonase ADPG
Probab=98.05 E-value=0.00011 Score=76.82 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=83.3
Q ss_pred eEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEeCCeeEEEeeeeeeCCCCCeeeeecCCeeEEE
Q 015569 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITI 240 (404)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~gs~nVWIDHcS~s~~~DgliDv~~gs~~VTI 240 (404)
.+.+..++||.|+||+|.. |. ++ ...|||.+.+++||.|.+|.++.+ |.+|.++.++++|+|
T Consensus 217 ~i~~~~~~nV~i~~v~I~a--~~------~s---------pNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI~I 278 (431)
T PLN02218 217 QISIEKCSNVQVSNVVVTA--PA------DS---------PNTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNVQI 278 (431)
T ss_pred EEEEEceeeEEEEEEEEeC--CC------CC---------CCCCcEeecccceEEEEccEEecC-CceEEecCCCceEEE
Confidence 3445677888888888863 21 11 367999999999999999999987 668999999999999
Q ss_pred EcceecccCeeeeecCCCCc-cCCCcceEEEEeeeeCCCCcCCCcccc---CCEEEEEcCeeeCCcce
Q 015569 241 SNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGLVQRIPRCR---HGYFHVVNNDYTHWEMY 304 (404)
Q Consensus 241 Snn~f~~H~k~~LiG~sd~~-~~d~~~~vTi~~N~f~~~~~~R~Pr~R---~G~~HvvNN~y~~w~~y 304 (404)
++|.+.. ..+.-||+--.+ ..+..-.|++.++.| .+. .+.=|++ .|.-.+-|=.|.+..|.
T Consensus 279 ~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~-~~t-~nGvRIKT~~Gg~G~v~nI~f~ni~m~ 343 (431)
T PLN02218 279 NDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKL-SGT-DNGVRIKTYQGGSGTASNIIFQNIQME 343 (431)
T ss_pred EeEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEE-ecC-CcceEEeecCCCCeEEEEEEEEeEEEE
Confidence 9999953 334667763322 123345789988888 333 3444443 23334444445555444
No 7
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.90 E-value=0.00014 Score=62.73 Aligned_cols=133 Identities=22% Similarity=0.322 Sum_probs=81.2
Q ss_pred eEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEeCCeeEEEeeeeeeCCCCCeeeeecCCeeEEE
Q 015569 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITI 240 (404)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~gs~nVWIDHcS~s~~~DgliDv~~gs~~VTI 240 (404)
||.+....++.|++.+|+++ ..+||.+.+...+.|+.|+|.....|+. ..+..+++|
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---------------------~~~gi~~~~~~~~~i~n~~i~~~~~gi~--~~~~~~~~i 58 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---------------------GGDGIHVSGSSNITIENCTISNGGYGIY--VSGGSNVTI 58 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---------------------SSECEEE-SSCESEEES-EEESSTTSEE--EECCES-EE
T ss_pred EEEEECCcCeEEeeeEEEeC---------------------CCeEEEEEcCCCeEEECeEEECCCcEEE--EecCCCeEE
Confidence 57788889999999999853 4688999999899999999999555554 345589999
Q ss_pred EcceecccCeeeeecCCCCccCCCcceEEEEeeeeCCCCcCCCcccc--CCEEEEEcCeeeCCcceeecc--CCCceeee
Q 015569 241 SNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCR--HGYFHVVNNDYTHWEMYAIGG--SANPTINS 316 (404)
Q Consensus 241 Snn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~Pr~R--~G~~HvvNN~y~~w~~yaigg--~~~~~i~~ 316 (404)
++|.|.+......+-.+. .+++.+|.|. ++..-.=.+. ...+.+.||.+.+-..+++-. ...+.+.+
T Consensus 59 ~~~~~~~~~~~i~~~~~~--------~~~i~~~~i~-~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i 129 (158)
T PF13229_consen 59 SNNTISDNGSGIYVSGSS--------NITIENNRIE-NNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTI 129 (158)
T ss_dssp ES-EEES-SEEEECCS-C--------S-EEES-EEE-CSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EE
T ss_pred ECeEEEEccceEEEEecC--------CceecCcEEE-cCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEE
Confidence 999999877333333222 6788888884 3332121222 235778888887765444322 22458888
Q ss_pred eccEEeCCC
Q 015569 317 QGNRFAAPD 325 (404)
Q Consensus 317 egN~F~~~~ 325 (404)
++|.|....
T Consensus 130 ~~n~i~~~~ 138 (158)
T PF13229_consen 130 ENNTISNNG 138 (158)
T ss_dssp ECEEEECES
T ss_pred EEEEEEeCc
Confidence 999998754
No 8
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.84 E-value=0.00039 Score=73.23 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=61.7
Q ss_pred cCCCcEEEeCCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcceecccCeeeeecCCCCcc-CCCcceEEEEeeeeCCCC
Q 015569 201 SDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYT-QDKNMQVTIAFNHFGEGL 279 (404)
Q Consensus 201 ~~~DaIsi~gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~-~d~~~~vTi~~N~f~~~~ 279 (404)
...|||.+..++||+|.+|.++.+ |.+|.++.++++|+|+++.+.. ..+.-||+--++. .+..-+|++.++.| .+.
T Consensus 186 pNTDGIDi~~S~nV~I~n~~I~tG-DDCIaiksgs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~-~~T 262 (456)
T PLN03003 186 PNTDGIDVGASSNVVIQDCIIATG-DDCIAINSGTSNIHISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNF-RGT 262 (456)
T ss_pred CCCCcEeecCcceEEEEecEEecC-CCeEEeCCCCccEEEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEE-ECC
Confidence 367999999999999999999876 5588889999999999999864 2356677633221 23456899999998 443
Q ss_pred cCCCcccc
Q 015569 280 VQRIPRCR 287 (404)
Q Consensus 280 ~~R~Pr~R 287 (404)
.+.=|++
T Consensus 263 -~nGvRIK 269 (456)
T PLN03003 263 -MNGARIK 269 (456)
T ss_pred -CcEEEEE
Confidence 3444553
No 9
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.77 E-value=0.0011 Score=63.00 Aligned_cols=136 Identities=20% Similarity=0.261 Sum_probs=75.8
Q ss_pred CcEEEeCCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeCCCCcCCC
Q 015569 204 DGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRI 283 (404)
Q Consensus 204 DaIsi~gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~ 283 (404)
+||.+..+.+..|..+.|+...+|.. ..++...+|++|.|.+...++.+-.+. +.++.+|.|.. ...--
T Consensus 80 ~Gi~l~~s~~~~I~~N~i~~n~~GI~--l~~s~~~~I~~N~i~~~~~GI~l~~s~--------~n~I~~N~i~~-n~~~G 148 (236)
T PF05048_consen 80 YGIYLMGSSNNTISNNTISNNGYGIY--LYGSSNNTISNNTISNNGYGIYLSSSS--------NNTITGNTISN-NTDYG 148 (236)
T ss_pred CCEEEEcCCCcEEECCEecCCCceEE--EeeCCceEEECcEEeCCCEEEEEEeCC--------CCEEECeEEeC-CCccc
Confidence 77888887777888888888888554 346777888888888666666665442 56777888743 21111
Q ss_pred cc-cc-CCEEEEEcCeeeCCcceeeccCCCceeeeeccEEeCCCCCcccceecccCCCCCccCCCe-eeecCceEEec
Q 015569 284 PR-CR-HGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVTKHEDAPESEWRNWN-WRSEGDLMVNG 358 (404)
Q Consensus 284 Pr-~R-~G~~HvvNN~y~~w~~yaigg~~~~~i~~egN~F~~~~~~~~k~vt~~~~~~~~~~~~~~-w~s~gd~~~nG 358 (404)
-. +. .....+++|.|.+-..-...++. .|+|-.+.. ....+.+..+....+|..+. .+.++|.+.+-
T Consensus 149 i~~~~~s~~n~I~~N~f~N~~~~~~~~~~-------~n~wn~~~~-~~~~~~g~~~~~GNyw~~~~g~D~~~dGi~d~ 218 (236)
T PF05048_consen 149 IYFLSGSSGNTIYNNNFNNSINVIIDGSS-------NNTWNSPKT-SGYNINGGPYTGGNYWSDYDGNDADGDGIGDT 218 (236)
T ss_pred eEEeccCCCCEEECCCccCEeccEEcCcc-------eeEEecCCc-eeeEEcCCccCcccccCCCCCccCCCCCeEEe
Confidence 11 11 23466788888332211111111 556654432 11122222233344565543 45566665554
No 10
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.74 E-value=0.00094 Score=69.47 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=75.0
Q ss_pred CceEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEeCCeeEEEeeeeeeCCCCCeeeeecCCeeE
Q 015569 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (404)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~gs~nVWIDHcS~s~~~DgliDv~~gs~~V 238 (404)
-..|.+..++||.|++|+|.. |.. + ...|||-+..++||+|.+|.++...| +|.++.++++|
T Consensus 178 ~w~i~~~~~~~v~i~~v~I~~--~~~------s---------pNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI 239 (404)
T PLN02188 178 FFHIALVECRNFKGSGLKISA--PSD------S---------PNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQV 239 (404)
T ss_pred CeEEEEEccccEEEEEEEEeC--CCC------C---------CCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccE
Confidence 456777789999999999974 211 1 36799999999999999999998866 88888899999
Q ss_pred EEEcceecccCeeeeecCCCC-ccCCCcceEEEEeeeeC
Q 015569 239 TISNNFMTHHDKVMLLGHSDT-YTQDKNMQVTIAFNHFG 276 (404)
Q Consensus 239 TISnn~f~~H~k~~LiG~sd~-~~~d~~~~vTi~~N~f~ 276 (404)
+|+|+.+.. ...+-+|+--. ......-.|++.++.|.
T Consensus 240 ~I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~ 277 (404)
T PLN02188 240 TITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFT 277 (404)
T ss_pred EEEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEE
Confidence 999998853 33566776221 11233558999999984
No 11
>PLN02793 Probable polygalacturonase
Probab=97.70 E-value=0.00083 Score=70.66 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=75.4
Q ss_pred ceEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEeCCeeEEEeeeeeeCCCCCeeeeecCCeeEE
Q 015569 160 PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAIT 239 (404)
Q Consensus 160 ~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~gs~nVWIDHcS~s~~~DgliDv~~gs~~VT 239 (404)
..|.+..++||.|++|+|... .. ....|||.+..++||+|.+|.+... |.+|.++.++++|+
T Consensus 201 ~~i~~~~~~nv~i~~l~I~~p--~~---------------spNTDGIdi~~s~nV~I~n~~I~~g-DDcIaik~~s~nI~ 262 (443)
T PLN02793 201 MHIAFTNCRRVTISGLKVIAP--AT---------------SPNTDGIHISASRGVVIKDSIVRTG-DDCISIVGNSSRIK 262 (443)
T ss_pred eEEEEEccCcEEEEEEEEECC--CC---------------CCCCCcEeeeccceEEEEeCEEeCC-CCeEEecCCcCCEE
Confidence 345566788999999988742 10 1367999999999999999999865 66888888999999
Q ss_pred EEcceecccCeeeeecCCCC-ccCCCcceEEEEeeeeCCCCcCCCccc
Q 015569 240 ISNNFMTHHDKVMLLGHSDT-YTQDKNMQVTIAFNHFGEGLVQRIPRC 286 (404)
Q Consensus 240 ISnn~f~~H~k~~LiG~sd~-~~~d~~~~vTi~~N~f~~~~~~R~Pr~ 286 (404)
|+||.+.. ..+.-||+--. ........|++.++.|. +. .+.=|+
T Consensus 263 I~n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~-~t-~~GirI 307 (443)
T PLN02793 263 IRNIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFLS-NT-DNGVRI 307 (443)
T ss_pred EEEeEEeC-CccEEEecccCcCCCCcEEEEEEEccEEe-CC-CceEEE
Confidence 99999854 22456776311 12233557999998883 33 344444
No 12
>PLN02155 polygalacturonase
Probab=97.68 E-value=0.00099 Score=69.11 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=76.1
Q ss_pred CceEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEeCCeeEEEeeeeeeCCCCCeeeeecCCeeE
Q 015569 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (404)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~gs~nVWIDHcS~s~~~DgliDv~~gs~~V 238 (404)
-..|.+..++||.|+||+|.. |+. ....|||.+..++||+|.+|.+..+-| +|.++.++++|
T Consensus 168 ~w~i~~~~~~nv~i~~v~I~~--p~~---------------~~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI 229 (394)
T PLN02155 168 VSHMTLNGCTNVVVRNVKLVA--PGN---------------SPNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNF 229 (394)
T ss_pred CeEEEEECeeeEEEEEEEEEC--CCC---------------CCCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceE
Confidence 456677789999999999974 221 136799999999999999999998866 78888899999
Q ss_pred EEEcceecccCeeeeecCCCCc-cCCCcceEEEEeeeeC
Q 015569 239 TISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFG 276 (404)
Q Consensus 239 TISnn~f~~H~k~~LiG~sd~~-~~d~~~~vTi~~N~f~ 276 (404)
+|++|.+.. ..++-||+--.+ +.....+|++.++.|.
T Consensus 230 ~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~ 267 (394)
T PLN02155 230 LITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFT 267 (394)
T ss_pred EEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEe
Confidence 999998874 235668874222 2334558999999993
No 13
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.65 E-value=0.00058 Score=68.73 Aligned_cols=133 Identities=20% Similarity=0.220 Sum_probs=87.9
Q ss_pred cCCCeEEEEccceEEEeCceeeeccCeeEeccCcceEEeCCceEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCc
Q 015569 119 QDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWR 198 (404)
Q Consensus 119 ~~~P~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~ 198 (404)
...|+.|.|...-.+.++ ++||.- +| ...+.+..++||.|++|+|+....
T Consensus 89 ~~rp~~i~~~~~~~~~i~-------~i~~~n--sp-----~w~~~~~~~~nv~i~~i~I~~~~~---------------- 138 (326)
T PF00295_consen 89 QRRPRLIRFNNCKNVTIE-------GITIRN--SP-----FWHIHINDCDNVTISNITINNPAN---------------- 138 (326)
T ss_dssp SSSSESEEEEEEEEEEEE-------SEEEES---S-----SESEEEESEEEEEEESEEEEEGGG----------------
T ss_pred ccccceeeeeeecceEEE-------eeEecC--CC-----eeEEEEEccCCeEEcceEEEecCC----------------
Confidence 356888888654222222 233332 22 567888899999999999986321
Q ss_pred cccCCCcEEEeCCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcceecccCeeeeecCCCCcc-CCCcceEEEEeeeeCC
Q 015569 199 TVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYT-QDKNMQVTIAFNHFGE 277 (404)
Q Consensus 199 ~~~~~DaIsi~gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~-~d~~~~vTi~~N~f~~ 277 (404)
....|||-+.+++||.|++|.+... |.+|.++.++.+|+|+||.|.. ..++-+|+--... ....-.|++.++.| .
T Consensus 139 -~~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i-~ 214 (326)
T PF00295_consen 139 -SPNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSGSGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTI-I 214 (326)
T ss_dssp -CTS--SEEEESEEEEEEESEEEESS-SESEEESSEECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEE-E
T ss_pred -CCCcceEEEEeeeEEEEEEeecccc-cCcccccccccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEe-e
Confidence 1368999999999999999999877 6678888777899999999964 3345666422211 11234788888888 3
Q ss_pred CCcCCCccc
Q 015569 278 GLVQRIPRC 286 (404)
Q Consensus 278 ~~~~R~Pr~ 286 (404)
+. .|.-|+
T Consensus 215 ~t-~~gi~i 222 (326)
T PF00295_consen 215 NT-DNGIRI 222 (326)
T ss_dssp SE-SEEEEE
T ss_pred cc-ceEEEE
Confidence 33 354444
No 14
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.51 E-value=0.0037 Score=62.87 Aligned_cols=158 Identities=15% Similarity=0.111 Sum_probs=92.7
Q ss_pred ccCeeEeccCcceEEeCCceEEEeeeceEEEEceEEeeccc-----CCCcc-cccCCCCc--CCcc-ccCCCcEEEeCCe
Q 015569 142 NSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKK-----GGNAM-VRDSPRHF--GWRT-VSDGDGVSIFGGT 212 (404)
Q Consensus 142 ~snkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~~-----g~~~~-i~~s~~~~--g~~~-~~~~DaIsi~gs~ 212 (404)
.+++||.|.+-. =.++.+|.++.++|++|+++++..... +..|. +..+..-. +..- ....+||.+..++
T Consensus 62 a~~VtI~~ltI~--~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~ 139 (314)
T TIGR03805 62 SDDVTLSDLAVE--NTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQ 139 (314)
T ss_pred eCCeEEEeeEEE--cCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECCCC
Confidence 566666665321 012557778888888888888862100 00111 11111000 0000 1234589999999
Q ss_pred eEEEeeeeeeCCCCCeeeeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeCCCCcCCC---------
Q 015569 213 HIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRI--------- 283 (404)
Q Consensus 213 nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~--------- 283 (404)
++.|-+|.+.....|.. ...|.++.|.+|.+.+-.-+.++-..+....-...++++++|.|..+ ...+
T Consensus 140 ~~~v~nN~~~~n~~GI~--i~~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n-~~~n~~~~gn~v~ 216 (314)
T TIGR03805 140 NIVVRNNVAEENVAGIE--IENSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN-NTPNFAPAGSIVA 216 (314)
T ss_pred CeEEECCEEccCcceEE--EEecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECC-CCCCCcccCCcee
Confidence 99999999999888765 34688999999999876556655322111111123899999999543 2221
Q ss_pred --ccccCC-------EEEEEcCeeeCCccee
Q 015569 284 --PRCRHG-------YFHVVNNDYTHWEMYA 305 (404)
Q Consensus 284 --Pr~R~G-------~~HvvNN~y~~w~~ya 305 (404)
|.-+ | .+.++||.+.+-...+
T Consensus 217 ~~~~g~-Gi~i~~~~~v~I~~N~i~~n~~~~ 246 (314)
T TIGR03805 217 SVPAGT-GVVVMANRDVEIFGNVISNNDTAN 246 (314)
T ss_pred cCCCCc-EEEEEcccceEEECCEEeCCccee
Confidence 1111 2 3589999998755443
No 15
>PLN03010 polygalacturonase
Probab=97.36 E-value=0.0087 Score=62.48 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=64.3
Q ss_pred cCCCcEEEeCCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcceecccCeeeeecCCCCc-cCCCcceEEEEeeeeCCCC
Q 015569 201 SDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGL 279 (404)
Q Consensus 201 ~~~DaIsi~gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~-~~d~~~~vTi~~N~f~~~~ 279 (404)
...|||-+..++||+|.+|.+... |.+|.++.++++++|.++.... ..+.-||+--+. ..+..-.|++..+.|. +.
T Consensus 205 ~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~-~t 281 (409)
T PLN03010 205 PNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFN-QT 281 (409)
T ss_pred CCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEe-CC
Confidence 367999999999999999988887 7788888888877777666542 224556653221 2233557899888884 32
Q ss_pred cCCCcccc---CCEEEEEcCeeeCCcc
Q 015569 280 VQRIPRCR---HGYFHVVNNDYTHWEM 303 (404)
Q Consensus 280 ~~R~Pr~R---~G~~HvvNN~y~~w~~ 303 (404)
++.=|++ +|.-.+-|=.|.+..|
T Consensus 282 -~~GirIKt~~G~~G~v~nItf~nI~m 307 (409)
T PLN03010 282 -TNGARIKTWQGGQGYARNISFENITL 307 (409)
T ss_pred -CcceEEEEecCCCEEEEEeEEEeEEE
Confidence 3444443 2333444555555544
No 16
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.31 E-value=0.003 Score=54.34 Aligned_cols=131 Identities=21% Similarity=0.234 Sum_probs=75.1
Q ss_pred CceEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEeCCeeEEEeeeeeeCCCCCeeeeecCCeeE
Q 015569 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (404)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~gs~nVWIDHcS~s~~~DgliDv~~gs~~V 238 (404)
+.+|.+...+++.|++-+|++ .+.+|.+.+..++.|+.|.|+... ..+.+ ..+..+
T Consensus 23 ~~gi~~~~~~~~~i~n~~i~~----------------------~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~-~~~~~~ 78 (158)
T PF13229_consen 23 GDGIHVSGSSNITIENCTISN----------------------GGYGIYVSGGSNVTISNNTISDNG-SGIYV-SGSSNI 78 (158)
T ss_dssp SECEEE-SSCESEEES-EEES----------------------STTSEEEECCES-EEES-EEES-S-EEEEC-CS-CS-
T ss_pred CeEEEEEcCCCeEEECeEEEC----------------------CCcEEEEecCCCeEEECeEEEEcc-ceEEE-EecCCc
Confidence 446777777778888888874 356788888899999999999888 44443 378899
Q ss_pred EEEcceecccCe-eeeecCCCCccCCCcceEEEEeeeeCCCCcCCCcccc-CC--EEEEEcCeeeCCcceeeccCCCce-
Q 015569 239 TISNNFMTHHDK-VMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCR-HG--YFHVVNNDYTHWEMYAIGGSANPT- 313 (404)
Q Consensus 239 TISnn~f~~H~k-~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~Pr~R-~G--~~HvvNN~y~~w~~yaigg~~~~~- 313 (404)
+|++|.|.+... .+.+.. ....+++.+|.|. +..+..=.+. .. .+-+.+|.+++-..+++.......
T Consensus 79 ~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~-~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~ 150 (158)
T PF13229_consen 79 TIENNRIENNGDYGIYISN-------SSSNVTIENNTIH-NNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSN 150 (158)
T ss_dssp EEES-EEECSSS-SCE-TC-------EECS-EEES-EEE-CCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS-
T ss_pred eecCcEEEcCCCccEEEec-------cCCCEEEEeEEEE-eCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCe
Confidence 999999987654 444432 0126788888884 3221111111 12 466788888877777774433333
Q ss_pred eeeeccEE
Q 015569 314 INSQGNRF 321 (404)
Q Consensus 314 i~~egN~F 321 (404)
+.+.+|.|
T Consensus 151 ~~v~~n~~ 158 (158)
T PF13229_consen 151 CTVTNNTF 158 (158)
T ss_dssp -EEES-E-
T ss_pred EEEECCCC
Confidence 77788876
No 17
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.31 E-value=0.011 Score=62.21 Aligned_cols=101 Identities=16% Similarity=0.256 Sum_probs=65.5
Q ss_pred hHHHHhhcCC-C-eEEEEccceEEEeCceeeeccCeeEeccCcce--EEeCCceEE-EeeeceEEEEceEEeecccCCCc
Q 015569 112 TLRYAVIQDE-P-LWIIFARDMTIRLKEELIMNSFKTIDGRGASV--HIAGGPCIT-IQYVTNIIIHGLNIHDCKKGGNA 186 (404)
Q Consensus 112 sLR~av~~~~-P-~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~--~I~~G~gi~-i~~a~NVIIrnL~i~~~~~g~~~ 186 (404)
.|+.|+.+-. | -.|++... +- +...|.+.+++||.|+.... .|.++.++. -..++||-|++++|++- |.
T Consensus 56 ALQaAIdaAa~gG~tV~Lp~G-~Y-~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGs--G~-- 129 (455)
T TIGR03808 56 ALQRAIDEAARAQTPLALPPG-VY-RTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGG--GI-- 129 (455)
T ss_pred HHHHHHHHhhcCCCEEEECCC-ce-ecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeC--CC--
Confidence 4888876522 2 34555543 22 23678888999999985432 355444444 35799999999999852 11
Q ss_pred ccccCCCCcCCccccCCCcEEEeCCeeEEEeeeeeeCCC-CCee
Q 015569 187 MVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCD-DGLV 229 (404)
Q Consensus 187 ~i~~s~~~~g~~~~~~~DaIsi~gs~nVWIDHcS~s~~~-Dgli 229 (404)
.+ ....-+|.+.+++++-|.+|.|.... -|..
T Consensus 130 -------dl----~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~ 162 (455)
T TIGR03808 130 -------PL----PQRRGLIHCQGGRDVRITDCEITGSGGNGIW 162 (455)
T ss_pred -------cc----cCCCCEEEEccCCceEEEeeEEEcCCcceEE
Confidence 01 12344788888999999999998873 5543
No 18
>PLN02218 polygalacturonase ADPG
Probab=97.29 E-value=0.013 Score=61.66 Aligned_cols=86 Identities=19% Similarity=0.308 Sum_probs=66.2
Q ss_pred eEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEeCCeeEEEeeeeeeC-----CCCCeeeeecCC
Q 015569 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSN-----CDDGLVDAIHGS 235 (404)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~gs~nVWIDHcS~s~-----~~DgliDv~~gs 235 (404)
-|++.+++|+.|++|++++. ..=.|.+..++||.|++.++.. -.|| || ...+
T Consensus 194 ~i~f~~~~nv~I~gitl~nS---------------------p~w~i~~~~~~nV~i~~v~I~a~~~spNTDG-Id-i~ss 250 (431)
T PLN02218 194 ALTFYNSKSLIVKNLRVRNA---------------------QQIQISIEKCSNVQVSNVVVTAPADSPNTDG-IH-ITNT 250 (431)
T ss_pred EEEEEccccEEEeCeEEEcC---------------------CCEEEEEEceeeEEEEEEEEeCCCCCCCCCc-Ee-eccc
Confidence 36678999999999999863 1224788899999999999876 3565 45 4578
Q ss_pred eeEEEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeC
Q 015569 236 TAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (404)
Q Consensus 236 ~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~ 276 (404)
++|+|++|.|..-|.+.-|.+.. ..|++..+.++
T Consensus 251 ~nV~I~n~~I~tGDDcIaIksgs-------~nI~I~n~~c~ 284 (431)
T PLN02218 251 QNIRVSNSIIGTGDDCISIESGS-------QNVQINDITCG 284 (431)
T ss_pred ceEEEEccEEecCCceEEecCCC-------ceEEEEeEEEE
Confidence 99999999999888777776532 26777777764
No 19
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.20 E-value=0.0093 Score=54.87 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=27.8
Q ss_pred HHHHh--h-cCCCeEEEEccceEEEeCceeeeccCeeEeccCc
Q 015569 113 LRYAV--I-QDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGA 152 (404)
Q Consensus 113 LR~av--~-~~~P~~IvF~~~g~I~L~~~L~v~snkTI~G~ga 152 (404)
|..|+ . ..+..+|.|- .|+-.+++.|.+.|++||.|.|.
T Consensus 21 iq~Ai~~~~~~~g~~v~~P-~G~Y~i~~~l~~~s~v~l~G~g~ 62 (225)
T PF12708_consen 21 IQAAIDAAAAAGGGVVYFP-PGTYRISGTLIIPSNVTLRGAGG 62 (225)
T ss_dssp HHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESST
T ss_pred HHHhhhhcccCCCeEEEEc-CcEEEEeCCeEcCCCeEEEccCC
Confidence 88888 2 3455666664 57889999999999999999876
No 20
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.14 E-value=0.034 Score=57.52 Aligned_cols=175 Identities=14% Similarity=0.157 Sum_probs=127.0
Q ss_pred HHHHhhcCCCeEEEEccceEEEeCceeeeccCeeEeccCcceEEe--CCceEEE---------eeeceEEEEceEEeecc
Q 015569 113 LRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIA--GGPCITI---------QYVTNIIIHGLNIHDCK 181 (404)
Q Consensus 113 LR~av~~~~P~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I~--~G~gi~i---------~~a~NVIIrnL~i~~~~ 181 (404)
|-.|+.+-. -|..+-+-+-++.+++.|.+..+|+|+||-+.|. ++.++.+ .+-.+|.+.|++|..-
T Consensus 57 le~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~- 133 (386)
T PF01696_consen 57 LEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR- 133 (386)
T ss_pred HHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC-
Confidence 888887654 2566666677778899999999999999998884 3444554 3567899999998731
Q ss_pred cCCCcccccCCCCcCCccccCCCcEEEeCCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcceecccCeeeeecCCCCcc
Q 015569 182 KGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYT 261 (404)
Q Consensus 182 ~g~~~~i~~s~~~~g~~~~~~~DaIsi~gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~ 261 (404)
..--++-+...+++.|.-|+|....-=.++.. ....|..|+|..-+|+.. +.+
T Consensus 134 -------------------~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~-~~~---- 186 (386)
T PF01696_consen 134 -------------------DTFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIV-SRG---- 186 (386)
T ss_pred -------------------CccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEee-cCC----
Confidence 12456778889999999999999887777754 467899999988777763 322
Q ss_pred CCCcceEEEEeeeeCCCCcCCCccccCCEEEEEcCeeeCCcceeeccCCCceeeeeccEEeCCCC
Q 015569 262 QDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDR 326 (404)
Q Consensus 262 ~d~~~~vTi~~N~f~~~~~~R~Pr~R~G~~HvvNN~y~~w~~yaigg~~~~~i~~egN~F~~~~~ 326 (404)
+.++++.+|.| +.+.=-. +-.|..++.+|...+-.-..+ ...+..+.+|.|..+..
T Consensus 187 ---~~~lsVk~C~F-ekC~igi--~s~G~~~i~hn~~~ec~Cf~l---~~g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 187 ---KSKLSVKKCVF-EKCVIGI--VSEGPARIRHNCASECGCFVL---MKGTGSIKHNMVCGPND 242 (386)
T ss_pred ---cceEEeeheee-eheEEEE--EecCCeEEecceecccceEEE---EcccEEEeccEEeCCCC
Confidence 34788899999 5443221 235788999999987653332 12335778999987766
No 21
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.04 E-value=0.013 Score=55.61 Aligned_cols=130 Identities=21% Similarity=0.175 Sum_probs=92.8
Q ss_pred CceEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEeCCeeEEEeeeeeeCCCCCeeeeecCCeeE
Q 015569 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (404)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~gs~nVWIDHcS~s~~~DgliDv~~gs~~V 238 (404)
..++.+..++++.|++.+|++. ..||.+.+++++-|..|.++.+.+|.. ...+.+.
T Consensus 35 ~~gi~~~~s~~~~I~~n~i~~~----------------------~~GI~~~~s~~~~i~~n~i~~n~~Gi~--l~~s~~~ 90 (236)
T PF05048_consen 35 RDGIYVENSDNNTISNNTISNN----------------------RYGIHLMGSSNNTIENNTISNNGYGIY--LMGSSNN 90 (236)
T ss_pred CCEEEEEEcCCeEEEeeEEECC----------------------CeEEEEEccCCCEEEeEEEEccCCCEE--EEcCCCc
Confidence 3456777889999999988742 467889999999999999999998866 3455555
Q ss_pred EEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeCCCCcCCCccccC-CEEEEEcCeeeCCcceeec-cCCCceeee
Q 015569 239 TISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRH-GYFHVVNNDYTHWEMYAIG-GSANPTINS 316 (404)
Q Consensus 239 TISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~Pr~R~-G~~HvvNN~y~~w~~yaig-g~~~~~i~~ 316 (404)
+|++|.|.+...+.++-.+. ..++..|.|. +.. ..-.+.. ....+.+|.+.+-..|++- ......-.+
T Consensus 91 ~I~~N~i~~n~~GI~l~~s~--------~~~I~~N~i~-~~~-~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I 160 (236)
T PF05048_consen 91 TISNNTISNNGYGIYLYGSS--------NNTISNNTIS-NNG-YGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTI 160 (236)
T ss_pred EEECCEecCCCceEEEeeCC--------ceEEECcEEe-CCC-EEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEE
Confidence 99999999877666665443 4678888884 322 2222222 4567889999877666665 334455678
Q ss_pred eccEEe
Q 015569 317 QGNRFA 322 (404)
Q Consensus 317 egN~F~ 322 (404)
.+|+|.
T Consensus 161 ~~N~f~ 166 (236)
T PF05048_consen 161 YNNNFN 166 (236)
T ss_pred ECCCcc
Confidence 899993
No 22
>PLN03003 Probable polygalacturonase At3g15720
Probab=96.76 E-value=0.024 Score=59.94 Aligned_cols=118 Identities=18% Similarity=0.321 Sum_probs=82.8
Q ss_pred CeEEEEccceEEEeCceeeeccCeeEeccCcceEE---eCCceEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCc
Q 015569 122 PLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHI---AGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWR 198 (404)
Q Consensus 122 P~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I---~~G~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~ 198 (404)
..||.|..- ..|.+...=||+|||..-.- ..-.-|.+..++|+.|++|++++..
T Consensus 104 ~~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp----------------- 160 (456)
T PLN03003 104 DQWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSP----------------- 160 (456)
T ss_pred cceEEEEcc------cceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCC-----------------
Confidence 358888542 23455445689999864210 0012467889999999999998631
Q ss_pred cccCCCcEEEeCCeeEEEeeeeeeC-----CCCCeeeeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEEee
Q 015569 199 TVSDGDGVSIFGGTHIWVDHCSLSN-----CDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFN 273 (404)
Q Consensus 199 ~~~~~DaIsi~gs~nVWIDHcS~s~-----~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N 273 (404)
.=.|.+.+++||.|++.++.. -.|| || ...+++|+|.+|.+..-|.+.-+.+..+ ++++.++
T Consensus 161 ----~w~i~i~~c~nV~i~~l~I~ap~~spNTDG-ID-i~~S~nV~I~n~~I~tGDDCIaiksgs~-------NI~I~n~ 227 (456)
T PLN03003 161 ----MAHIHISECNYVTISSLRINAPESSPNTDG-ID-VGASSNVVIQDCIIATGDDCIAINSGTS-------NIHISGI 227 (456)
T ss_pred ----cEEEEEeccccEEEEEEEEeCCCCCCCCCc-Ee-ecCcceEEEEecEEecCCCeEEeCCCCc-------cEEEEee
Confidence 224778899999999999986 3565 45 4578999999999999888777765422 5666666
Q ss_pred ee
Q 015569 274 HF 275 (404)
Q Consensus 274 ~f 275 (404)
.+
T Consensus 228 ~c 229 (456)
T PLN03003 228 DC 229 (456)
T ss_pred EE
Confidence 55
No 23
>PLN02155 polygalacturonase
Probab=96.71 E-value=0.031 Score=58.13 Aligned_cols=117 Identities=21% Similarity=0.363 Sum_probs=81.0
Q ss_pred eEEEEccceEEEeCceeeeccCeeEeccCcceEEe--CC-------ceEEEeeeceEEEEceEEeecccCCCcccccCCC
Q 015569 123 LWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIA--GG-------PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPR 193 (404)
Q Consensus 123 ~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I~--~G-------~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~ 193 (404)
.||.|..- +.+.+.. =||+|||..-.-. .+ ..|.+..++||.|++|++++..
T Consensus 107 ~wi~~~~~------~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp------------ 167 (394)
T PLN02155 107 YWILFNKV------NRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQ------------ 167 (394)
T ss_pred eeEEEECc------CCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCC------------
Confidence 46666432 3344444 6899998642111 01 2367789999999999998641
Q ss_pred CcCCccccCCCcEEEeCCeeEEEeeeeeeCC-----CCCeeeeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceE
Q 015569 194 HFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC-----DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQV 268 (404)
Q Consensus 194 ~~g~~~~~~~DaIsi~gs~nVWIDHcS~s~~-----~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~v 268 (404)
.=.|.+.+++||.|+|.++..- .|| || ...+++|+|++|.|..-|...-+++..+ ++
T Consensus 168 ---------~w~i~~~~~~nv~i~~v~I~~p~~~~NtDG-id-i~~s~nV~I~~~~I~~gDDcIaik~gs~-------nI 229 (394)
T PLN02155 168 ---------VSHMTLNGCTNVVVRNVKLVAPGNSPNTDG-FH-VQFSTGVTFTGSTVQTGDDCVAIGPGTR-------NF 229 (394)
T ss_pred ---------CeEEEEECeeeEEEEEEEEECCCCCCCCCc-cc-cccceeEEEEeeEEecCCceEEcCCCCc-------eE
Confidence 2247778999999999999653 465 44 4578999999999999888887775422 67
Q ss_pred EEEeeeeC
Q 015569 269 TIAFNHFG 276 (404)
Q Consensus 269 Ti~~N~f~ 276 (404)
++..+.++
T Consensus 230 ~I~n~~c~ 237 (394)
T PLN02155 230 LITKLACG 237 (394)
T ss_pred EEEEEEEE
Confidence 77776663
No 24
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=96.59 E-value=0.023 Score=57.30 Aligned_cols=107 Identities=21% Similarity=0.342 Sum_probs=72.6
Q ss_pred eeccCeeEeccCcceEEeCC----------ceEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEe
Q 015569 140 IMNSFKTIDGRGASVHIAGG----------PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF 209 (404)
Q Consensus 140 ~v~snkTI~G~ga~~~I~~G----------~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~ 209 (404)
.+...=||+|+|..-.-..+ ..|.+.+++|+.|++|++++.. .=.+.+.
T Consensus 63 ~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp---------------------~w~~~~~ 121 (326)
T PF00295_consen 63 TITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSP---------------------FWHIHIN 121 (326)
T ss_dssp ECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-S---------------------SESEEEE
T ss_pred EecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCC---------------------eeEEEEE
Confidence 34445689999872100001 2377889999999999998631 1147888
Q ss_pred CCeeEEEeeeeeeC-----CCCCeeeeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeC
Q 015569 210 GGTHIWVDHCSLSN-----CDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (404)
Q Consensus 210 gs~nVWIDHcS~s~-----~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~ 276 (404)
.++||.|+|.++.. -.||. | ..++++|+|.+|.|...+.+.-+.+... .+++.+++|.
T Consensus 122 ~~~nv~i~~i~I~~~~~~~NtDGi-d-~~~s~nv~I~n~~i~~gDD~Iaiks~~~-------ni~v~n~~~~ 184 (326)
T PF00295_consen 122 DCDNVTISNITINNPANSPNTDGI-D-IDSSKNVTIENCFIDNGDDCIAIKSGSG-------NILVENCTCS 184 (326)
T ss_dssp SEEEEEEESEEEEEGGGCTS--SE-E-EESEEEEEEESEEEESSSESEEESSEEC-------EEEEESEEEE
T ss_pred ccCCeEEcceEEEecCCCCCcceE-E-EEeeeEEEEEEeecccccCccccccccc-------ceEEEeEEEe
Confidence 99999999999975 35664 4 3478999999999998887766654422 6777777774
No 25
>PLN02197 pectinesterase
Probab=96.57 E-value=0.04 Score=60.01 Aligned_cols=137 Identities=25% Similarity=0.331 Sum_probs=85.8
Q ss_pred Ccccccc--ccccccCcccccCCCCCCCCCcE---EEEcCCCCCCCCCCCch---hHHHHhhc----CCCeEEEEccceE
Q 015569 65 DPNWEKN--RQRLADCAIGFGKNAVGGRDGRI---YVVTDPGDYDVVNPKPG---TLRYAVIQ----DEPLWIIFARDMT 132 (404)
Q Consensus 65 ~~~w~~~--r~~la~~a~GfG~~ttGG~gG~v---y~VT~~~D~~~~~p~pG---sLR~av~~----~~P~~IvF~~~g~ 132 (404)
.|.|-.. |+-|+ +.+.|.++-||.++.+ ++|- .| |.| |+.+||.. +..|+|||=+.|+
T Consensus 244 ~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa--~d------GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv 313 (588)
T PLN02197 244 IPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVA--KD------GSGQFKTISQAVMACPDKNPGRCIIHIKAGI 313 (588)
T ss_pred CCCCCCccchhhhc--cCcccccccccccccccccEEEc--CC------CCCCcCCHHHHHHhccccCCceEEEEEeCce
Confidence 5899765 55553 4556677777776643 3332 12 555 78888854 3346677766676
Q ss_pred EEeCceeee---ccCeeEeccCcceE-Ee--------CCce----EE-EeeeceEEEEceEEeecccCCCcccccCCCCc
Q 015569 133 IRLKEELIM---NSFKTIDGRGASVH-IA--------GGPC----IT-IQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHF 195 (404)
Q Consensus 133 I~L~~~L~v---~snkTI~G~ga~~~-I~--------~G~g----i~-i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~ 195 (404)
-+ +.+.| .+|+||.|.|..-+ |. +|.. =+ ...+++++.+||.|++-...
T Consensus 314 Y~--E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v~~~~F~a~nitf~Ntag~------------ 379 (588)
T PLN02197 314 YN--EQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNTAGP------------ 379 (588)
T ss_pred EE--EEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEEECCcEEEEEeEEEeCCCC------------
Confidence 43 45555 47899999887533 32 2211 01 13689999999999984210
Q ss_pred CCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeee
Q 015569 196 GWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (404)
Q Consensus 196 g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliD 230 (404)
.+.-|+-+. .+...-+.+|+|.-..|=|.+
T Consensus 380 -----~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~ 410 (588)
T PLN02197 380 -----MGHQAVAIRVNGDRAVIFNCRFDGYQDTLYV 410 (588)
T ss_pred -----CCCceEEEEecCCcEEEEEeEEEecCcceEe
Confidence 123455554 578899999999887776664
No 26
>PLN03010 polygalacturonase
Probab=96.50 E-value=0.055 Score=56.58 Aligned_cols=89 Identities=21% Similarity=0.297 Sum_probs=65.6
Q ss_pred eEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEeCCeeEEEeeeeeeC-----CCCCeeeeecCC
Q 015569 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSN-----CDDGLVDAIHGS 235 (404)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~gs~nVWIDHcS~s~-----~~DgliDv~~gs 235 (404)
-|.+.+++||.|++|++++.. .=.|.+.+++||.|++.++.. -.|| || ...+
T Consensus 159 ~l~~~~~~nv~v~gitl~nsp---------------------~~~i~i~~~~nv~i~~i~I~a~~~s~NTDG-iD-i~~s 215 (409)
T PLN03010 159 ALHISKCDNLTINGITSIDSP---------------------KNHISIKTCNYVAISKINILAPETSPNTDG-ID-ISYS 215 (409)
T ss_pred eEEEEeecCeEEeeeEEEcCC---------------------ceEEEEeccccEEEEEEEEeCCCCCCCCCc-ee-eecc
Confidence 377889999999999998631 123778899999999999875 3565 44 4578
Q ss_pred eeEEEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeCC
Q 015569 236 TAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGE 277 (404)
Q Consensus 236 ~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~~ 277 (404)
++|+|++|.+..-|.+.-+.+..+ ...|+...+..++
T Consensus 216 ~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gH 252 (409)
T PLN03010 216 TNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGH 252 (409)
T ss_pred ceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcC
Confidence 999999999999888887765421 2355555554443
No 27
>PLN02480 Probable pectinesterase
Probab=96.50 E-value=0.059 Score=55.13 Aligned_cols=118 Identities=18% Similarity=0.316 Sum_probs=75.9
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcc-eEEeC---------CceEEEeeeceEEEEc
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGAS-VHIAG---------GPCITIQYVTNIIIHG 174 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~-~~I~~---------G~gi~i~~a~NVIIrn 174 (404)
|+.+||.+ +..+++||=+.|+-+ +.|.| .+|+||.|.+.. ..|.. +..+++ .+++++++|
T Consensus 62 TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~n 138 (343)
T PLN02480 62 SVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAFG 138 (343)
T ss_pred cHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEEe
Confidence 78888854 234566665566554 55666 678999998743 33432 223444 589999999
Q ss_pred eEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcceecc
Q 015569 175 LNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTH 247 (404)
Q Consensus 175 L~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~ 247 (404)
|+|++..+.+. ....+.-|+-+. .++++-+.+|.|.-..|=|.+- ...--+.+|+++.
T Consensus 139 LTf~Nta~~g~------------~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C~IeG 197 (343)
T PLN02480 139 ISIRNDAPTGM------------AFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDY---KGRHYYHSCYIQG 197 (343)
T ss_pred eEEEecCCCCC------------CCCCCCceEEEEecCCcEEEEeeEEecccceeEeC---CCCEEEEeCEEEe
Confidence 99998643110 001244566664 6899999999999988888752 2344555666654
No 28
>smart00656 Amb_all Amb_all domain.
Probab=96.37 E-value=0.14 Score=47.99 Aligned_cols=135 Identities=18% Similarity=0.186 Sum_probs=80.3
Q ss_pred ccCeeEeccCcceEEeCCceEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCc-EEEe-CCeeEEEeee
Q 015569 142 NSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDG-VSIF-GGTHIWVDHC 219 (404)
Q Consensus 142 ~snkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~Da-Isi~-gs~nVWIDHc 219 (404)
-.|++|.+.... ...++-+|.+..++||+|.+..|....+. +.. ....|+ +.+. ++.+|=|-.|
T Consensus 44 irnl~i~~~~~~-~~~~~D~i~~~~~~~VwIDHct~s~~~~~------------~~~-~~~~D~~~di~~~s~~vTvs~~ 109 (190)
T smart00656 44 IRNLTIHDPKPV-YGSDGDAISIDGSSNVWIDHVSLSGCTVT------------GFG-DDTYDGLIDIKNGSTYVTISNN 109 (190)
T ss_pred EeCCEEECCccC-CCCCCCEEEEeCCCeEEEEccEeEcceec------------cCC-CCCCCccEEECcccccEEEECc
Confidence 357777775332 11235688888999999999999864211 000 012344 3443 5677777777
Q ss_pred eeeCCCCCeeeeecCC------eeEEEEcceecccC-eeeeecCCCCccCCCcceEEEEeeeeCCCCcCCCcccc-CCEE
Q 015569 220 SLSNCDDGLVDAIHGS------TAITISNNFMTHHD-KVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCR-HGYF 291 (404)
Q Consensus 220 S~s~~~DgliDv~~gs------~~VTISnn~f~~H~-k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~Pr~R-~G~~ 291 (404)
.|....-+.+--...+ -.||+.+|+|.+.. +..++... ++-+..|+|- +..+-.--++ .+.+
T Consensus 110 ~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~g---------~~hv~NN~~~-n~~~~~~~~~~~~~v 179 (190)
T smart00656 110 YFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRFG---------YVHVYNNYYT-GWTSYAIGGRMGATI 179 (190)
T ss_pred eEecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccCC---------EEEEEeeEEe-CcccEeEecCCCcEE
Confidence 7765444444211111 26999999998743 44444221 6788889883 4332221222 3689
Q ss_pred EEEcCeeeC
Q 015569 292 HVVNNDYTH 300 (404)
Q Consensus 292 HvvNN~y~~ 300 (404)
.+-||||.+
T Consensus 180 ~~E~N~F~~ 188 (190)
T smart00656 180 LSEGNYFEA 188 (190)
T ss_pred EEECeEEEC
Confidence 999999986
No 29
>PLN02793 Probable polygalacturonase
Probab=96.31 E-value=0.082 Score=55.83 Aligned_cols=108 Identities=17% Similarity=0.257 Sum_probs=75.8
Q ss_pred eeeccCeeEeccCcceE-----EeC-------CceEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcE
Q 015569 139 LIMNSFKTIDGRGASVH-----IAG-------GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGV 206 (404)
Q Consensus 139 L~v~snkTI~G~ga~~~-----I~~-------G~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaI 206 (404)
|.|...=||+|+|..-. +.. -.-|.+.+++||.|++|++++.. .=.+
T Consensus 145 i~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp---------------------~~~i 203 (443)
T PLN02793 145 LTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ---------------------QMHI 203 (443)
T ss_pred EEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC---------------------CeEE
Confidence 44444568888885321 010 11367789999999999998631 1236
Q ss_pred EEeCCeeEEEeeeeeeC-----CCCCeeeeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeC
Q 015569 207 SIFGGTHIWVDHCSLSN-----CDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (404)
Q Consensus 207 si~gs~nVWIDHcS~s~-----~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~ 276 (404)
.+.+++||.|++.++.. -.||. | ...+++|+|++|.|...|.+..+..+. .+|++..+.++
T Consensus 204 ~~~~~~nv~i~~l~I~~p~~spNTDGI-d-i~~s~nV~I~n~~I~~gDDcIaik~~s-------~nI~I~n~~c~ 269 (443)
T PLN02793 204 AFTNCRRVTISGLKVIAPATSPNTDGI-H-ISASRGVVIKDSIVRTGDDCISIVGNS-------SRIKIRNIACG 269 (443)
T ss_pred EEEccCcEEEEEEEEECCCCCCCCCcE-e-eeccceEEEEeCEEeCCCCeEEecCCc-------CCEEEEEeEEe
Confidence 77889999999999975 35664 4 457899999999999988777775432 16777777663
No 30
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=96.21 E-value=0.064 Score=56.53 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=92.5
Q ss_pred CeeEeccCcceEEeCCceEEEeeeceEEEEceEEeecc------cCCCcccccCCCCcCCccccCCCcEEEeCCeeEEEe
Q 015569 144 FKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCK------KGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVD 217 (404)
Q Consensus 144 nkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~------~g~~~~i~~s~~~~g~~~~~~~DaIsi~gs~nVWID 217 (404)
.+||+|.|.+..=. -.+|.++.++++.|++.+|++.- .+..+.|.+.. -.+ ....+|.++.++++.|.
T Consensus 121 GLtIdGsG~dl~~r-dAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~-I~g----~~~~~I~lw~S~g~~V~ 194 (455)
T TIGR03808 121 GLTLDGGGIPLPQR-RGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNT-ITQ----IAVTAIVSFDALGLIVA 194 (455)
T ss_pred eeEEEeCCCcccCC-CCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecce-Eec----cccceEEEeccCCCEEE
Confidence 34777777543222 23677889999999999998751 01111221110 001 12344888899999999
Q ss_pred eeeeeCCCCCeeeeec-----------------------------------CCeeEEEEcceecccCeeeeecCCCCccC
Q 015569 218 HCSLSNCDDGLVDAIH-----------------------------------GSTAITISNNFMTHHDKVMLLGHSDTYTQ 262 (404)
Q Consensus 218 HcS~s~~~DgliDv~~-----------------------------------gs~~VTISnn~f~~H~k~~LiG~sd~~~~ 262 (404)
+++++.+.|+.|-+.+ .+.+++|++|.+.++.+-.+.+.+.+
T Consensus 195 ~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss--- 271 (455)
T TIGR03808 195 RNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSAS--- 271 (455)
T ss_pred CCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEccc---
Confidence 9999999996554432 23568888888888874444443322
Q ss_pred CCcceEEEEeeeeCCCCcCCCccccC-C----E----EEEEcCeeeCC-cceeec-cCCCcee-eeeccEEeC
Q 015569 263 DKNMQVTIAFNHFGEGLVQRIPRCRH-G----Y----FHVVNNDYTHW-EMYAIG-GSANPTI-NSQGNRFAA 323 (404)
Q Consensus 263 d~~~~vTi~~N~f~~~~~~R~Pr~R~-G----~----~HvvNN~y~~w-~~yaig-g~~~~~i-~~egN~F~~ 323 (404)
++.|..|.| + ++|+ + | ..+.||.++.- ..|++- -.++..+ ..+||...+
T Consensus 272 ----~~~i~~N~~-~-------~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn 332 (455)
T TIGR03808 272 ----NIQITGNSV-S-------DVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRN 332 (455)
T ss_pred ----CcEEECcEe-e-------eeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeec
Confidence 455666665 2 2344 2 1 13667776543 456652 1233333 566776654
No 31
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=96.18 E-value=0.26 Score=48.34 Aligned_cols=117 Identities=22% Similarity=0.231 Sum_probs=71.3
Q ss_pred hHHHHhhcCCCeEEEEccceEEEeC----ceeeeccCeeEeccCcc-----eEEeC--------Cce-------EEEeee
Q 015569 112 TLRYAVIQDEPLWIIFARDMTIRLK----EELIMNSFKTIDGRGAS-----VHIAG--------GPC-------ITIQYV 167 (404)
Q Consensus 112 sLR~av~~~~P~~IvF~~~g~I~L~----~~L~v~snkTI~G~ga~-----~~I~~--------G~g-------i~i~~a 167 (404)
||.+|+.+-.|-.+|.=..|+-+-. -+|.+.+.+||.|..+. +.+.+ |.+ ++|..+
T Consensus 17 Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~~ 96 (246)
T PF07602_consen 17 TITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIILA 96 (246)
T ss_pred HHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEec
Confidence 7888887655543333344555432 24778888888885331 22221 111 344567
Q ss_pred ceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEeCCeeEEEeeeeeeCC-CCCeeeeec----CCeeEEEEc
Q 015569 168 TNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC-DDGLVDAIH----GSTAITISN 242 (404)
Q Consensus 168 ~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~gs~nVWIDHcS~s~~-~DgliDv~~----gs~~VTISn 242 (404)
++..|++++|++..+ ..+-||.|.++ +.-|..|+|+.+ .+|.+.... ...+++|+.
T Consensus 97 ~~~~i~GvtItN~n~------------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~G 157 (246)
T PF07602_consen 97 NNATISGVTITNPNI------------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISG 157 (246)
T ss_pred CCCEEEEEEEEcCCC------------------CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeec
Confidence 778888888876321 24668888777 888899999996 566543221 234677777
Q ss_pred ceecc
Q 015569 243 NFMTH 247 (404)
Q Consensus 243 n~f~~ 247 (404)
|.+..
T Consensus 158 N~~~~ 162 (246)
T PF07602_consen 158 NSIYF 162 (246)
T ss_pred ceEEe
Confidence 77664
No 32
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=95.77 E-value=0.15 Score=53.32 Aligned_cols=117 Identities=21% Similarity=0.321 Sum_probs=81.4
Q ss_pred eEEEEccceEEEeCceeeeccCeeEeccCcceE------Ee-C----CceEEEeeeceEEEEceEEeecccCCCcccccC
Q 015569 123 LWIIFARDMTIRLKEELIMNSFKTIDGRGASVH------IA-G----GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDS 191 (404)
Q Consensus 123 ~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~------I~-~----G~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s 191 (404)
.||.|.. -..|.+...=||+|||..-. .. + -.-|.+..++||.|++|++++.
T Consensus 114 ~~i~~~~------~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS----------- 176 (404)
T PLN02188 114 DWIEFGW------VNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS----------- 176 (404)
T ss_pred ceEEEec------eeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC-----------
Confidence 4777631 13455666778999986310 00 0 1235678899999999999863
Q ss_pred CCCcCCccccCCCcEEEeCCeeEEEeeeeeeC-----CCCCeeeeecCCeeEEEEcceecccCeeeeecCCCCccCCCcc
Q 015569 192 PRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSN-----CDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNM 266 (404)
Q Consensus 192 ~~~~g~~~~~~~DaIsi~gs~nVWIDHcS~s~-----~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~ 266 (404)
..=.|.+..++||.|++.++.. -.||. | ...+++|+|.+|.|..-+.+.-++...+
T Consensus 177 ----------p~w~i~~~~~~~v~i~~v~I~~~~~spNtDGi-d-i~~s~nV~I~n~~I~~GDDcIaiksg~~------- 237 (404)
T PLN02188 177 ----------KFFHIALVECRNFKGSGLKISAPSDSPNTDGI-H-IERSSGVYISDSRIGTGDDCISIGQGNS------- 237 (404)
T ss_pred ----------CCeEEEEEccccEEEEEEEEeCCCCCCCCCcE-e-eeCcccEEEEeeEEeCCCcEEEEccCCc-------
Confidence 1224778899999999999986 35654 4 4578999999999999888877754321
Q ss_pred eEEEEeeee
Q 015569 267 QVTIAFNHF 275 (404)
Q Consensus 267 ~vTi~~N~f 275 (404)
++++.++.+
T Consensus 238 nI~I~n~~c 246 (404)
T PLN02188 238 QVTITRIRC 246 (404)
T ss_pred cEEEEEEEE
Confidence 567766665
No 33
>PLN02682 pectinesterase family protein
Probab=95.56 E-value=0.66 Score=48.04 Aligned_cols=119 Identities=17% Similarity=0.240 Sum_probs=72.6
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcce-EEe----------CC--------ceEEEe
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASV-HIA----------GG--------PCITIQ 165 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~-~I~----------~G--------~gi~i~ 165 (404)
|+.+||.. +..+++||=+.|+- ++.|.| .+|+||.|.|..- .|. +| +.+ ..
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~Y--~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~-~v 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGTY--REKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATF-AV 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--eEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEE-EE
Confidence 67788743 22345555455643 355555 6899999998643 332 11 112 23
Q ss_pred eeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcce
Q 015569 166 YVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNF 244 (404)
Q Consensus 166 ~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~ 244 (404)
.+++++.+||+|++-.+.. .+ | ..+.-|+.+. .+.++-+.+|.|.-..|=|.+- ...--+.+|+
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~------~~---g---~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~ 225 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVP------PP---G---ALGKQAVALRISADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCY 225 (369)
T ss_pred ECCCeEEEeeEEEcccccC------CC---C---CCcccEEEEEecCCcEEEEcceEeccccceEEC---CCCEEEEeeE
Confidence 6899999999999854311 00 1 1233455553 4889999999999988877762 2345556666
Q ss_pred eccc
Q 015569 245 MTHH 248 (404)
Q Consensus 245 f~~H 248 (404)
+..+
T Consensus 226 IeG~ 229 (369)
T PLN02682 226 IEGS 229 (369)
T ss_pred Eccc
Confidence 6643
No 34
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=95.01 E-value=0.33 Score=45.79 Aligned_cols=118 Identities=16% Similarity=0.209 Sum_probs=68.1
Q ss_pred eCCceEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCc-EEEe-CCeeEEEeeeeeeCCCCCeee----
Q 015569 157 AGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDG-VSIF-GGTHIWVDHCSLSNCDDGLVD---- 230 (404)
Q Consensus 157 ~~G~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~Da-Isi~-gs~nVWIDHcS~s~~~DgliD---- 230 (404)
.++-+|.+.+++||+|.+..|........ ....|+ +.+. ++++|=|-+|-|.......+-
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~~~~~~--------------~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d 138 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWGNFECN--------------SDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSD 138 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEETTS-GG--------------GSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCT
T ss_pred cCCCeEEEEecccEEEeccEEeccccccc--------------cccCCceEEEEeCCceEEEEchhccccccccccCCCC
Confidence 44667889999999999999997622110 012343 5654 578888888888764333321
Q ss_pred --eecCCeeEEEEcceecccC-eeeeecCCCCccCCCcceEEEEeeeeCCCCcCCCcccc-CCEEEEEcCee
Q 015569 231 --AIHGSTAITISNNFMTHHD-KVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCR-HGYFHVVNNDY 298 (404)
Q Consensus 231 --v~~gs~~VTISnn~f~~H~-k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~Pr~R-~G~~HvvNN~y 298 (404)
.......||+.+|+|.+.. +..++... ++-+..|+| .+..+..=.+| .+++-+-||||
T Consensus 139 ~~~~~~~~~vT~hhN~f~~~~~R~P~~r~G---------~~Hv~NN~~-~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 139 SNSTDRGLRVTFHHNYFANTNSRNPRVRFG---------YVHVYNNYY-YNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp TCGGGTTEEEEEES-EEEEEEE-TTEECSC---------EEEEES-EE-EEECSESEEEETTEEEEEES-EE
T ss_pred CccccCCceEEEEeEEECchhhCCCccccc---------EEEEEEeee-ECCCCEEEEccCCeEEEEECcCC
Confidence 1122369999999998643 44444321 678888888 33444433333 35778888886
No 35
>PLN02176 putative pectinesterase
Probab=95.01 E-value=0.49 Score=48.50 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=73.8
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcceE-Ee--CC------ceEEEeeeceEEEEce
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IA--GG------PCITIQYVTNIIIHGL 175 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~--~G------~gi~i~~a~NVIIrnL 175 (404)
|+.+||.. +..+++||-+.|+-+ +.|.| .+|+||.|.|...+ |. ++ ..+.+ .+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEee
Confidence 77888843 334566666667654 45555 57999999987543 32 11 12333 6899999999
Q ss_pred EEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcceecc
Q 015569 176 NIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTH 247 (404)
Q Consensus 176 ~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~ 247 (404)
+|++-.+..+ + -+ ..++-|+-+. .+..+-+.+|.|.-..|=|.+- ...--+.+|+++.
T Consensus 130 T~~Nt~~~~~------~--~~---~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIeG 188 (340)
T PLN02176 130 TFKNTYNIAS------N--SS---RPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVISG 188 (340)
T ss_pred EEEeCCCccC------C--CC---CCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEEe
Confidence 9998643100 0 00 1234455554 4788999999999887777752 2344555666654
No 36
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=94.82 E-value=0.25 Score=53.45 Aligned_cols=102 Identities=16% Similarity=0.218 Sum_probs=67.6
Q ss_pred eEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEeCCeeEEEeeeeeeCCCCCeeeeec-------
Q 015569 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIH------- 233 (404)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~gs~nVWIDHcS~s~~~DgliDv~~------- 233 (404)
++..+.++|+.++||+|..-.+ ...|||-+..++||-|+-|.|+.+ |-+|-++.
T Consensus 263 ~~h~~~~~nl~~~nl~I~~~~~------------------~NtDG~d~~sc~NvlI~~~~fdtg-DD~I~iksg~~~~~~ 323 (542)
T COG5434 263 TVHPVDCDNLTFRNLTIDANRF------------------DNTDGFDPGSCSNVLIEGCRFDTG-DDCIAIKSGAGLDGK 323 (542)
T ss_pred EEeeecccCceecceEEECCCC------------------CCCCccccccceeEEEeccEEecC-CceEEeecccCCccc
Confidence 4566789999999999974221 257999999999999999999984 33443332
Q ss_pred ----CCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeCCCCcCCCccc
Q 015569 234 ----GSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRC 286 (404)
Q Consensus 234 ----gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~Pr~ 286 (404)
-+.+|+|++|+|..-.-+..+|+.- ..+...+++-.|.| .+ ..|.=|+
T Consensus 324 ~~~~~~~~i~i~~c~~~~ghG~~v~Gse~---~ggv~ni~ved~~~-~~-~d~GLRi 375 (542)
T COG5434 324 KGYGPSRNIVIRNCYFSSGHGGLVLGSEM---GGGVQNITVEDCVM-DN-TDRGLRI 375 (542)
T ss_pred ccccccccEEEecceecccccceEeeeec---CCceeEEEEEeeee-cc-Ccceeee
Confidence 2357999999998533344444321 11234678888888 33 3344444
No 37
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=94.48 E-value=0.46 Score=51.63 Aligned_cols=115 Identities=18% Similarity=0.259 Sum_probs=72.2
Q ss_pred hHHHHhhc-----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcceE-Ee-------CCc------eEEEeeece
Q 015569 112 TLRYAVIQ-----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IA-------GGP------CITIQYVTN 169 (404)
Q Consensus 112 sLR~av~~-----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~-------~G~------gi~i~~a~N 169 (404)
|+.+||.. ..-|.|||=+.|+-+ +.+.| ..|+||.|.|..-+ |. +|. .+. ..+++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~-v~~~~ 331 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVG-VLGDG 331 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEE-EEcCC
Confidence 77888743 134667776677644 44544 67999999986543 33 121 112 36899
Q ss_pred EEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCe-----------------eee
Q 015569 170 IIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGL-----------------VDA 231 (404)
Q Consensus 170 VIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~Dgl-----------------iDv 231 (404)
++.+||+|++-- +. ...-|+-+. .+..+-+.+|.|.-..|=| +|+
T Consensus 332 f~a~~it~~Nta-g~----------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDF 394 (553)
T PLN02708 332 FMARDLTIQNTA-GP----------------DAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDF 394 (553)
T ss_pred eEEEeeEEEcCC-CC----------------CCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCE
Confidence 999999999742 10 123455554 5788999999998755544 455
Q ss_pred ecCCeeEEEEcceec
Q 015569 232 IHGSTAITISNNFMT 246 (404)
Q Consensus 232 ~~gs~~VTISnn~f~ 246 (404)
+-|.-.+-+++|.|.
T Consensus 395 IFG~a~avfq~c~i~ 409 (553)
T PLN02708 395 IFGNSAAVFQDCAIL 409 (553)
T ss_pred EecCceEEEEccEEE
Confidence 555555555666554
No 38
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=94.40 E-value=0.55 Score=48.06 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=66.5
Q ss_pred eeeccCeeEeccCcceEEeCCceEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEeCCeeEEEee
Q 015569 139 LIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDH 218 (404)
Q Consensus 139 L~v~snkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~gs~nVWIDH 218 (404)
|.+....|-++.-.+-.|+...||.+.++..+.|..-+|.+... .+...-|+||+++.++.+-|=-
T Consensus 100 I~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~--------------~r~~~rGnGI~vyNa~~a~V~~ 165 (408)
T COG3420 100 IFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLAD--------------LRVAERGNGIYVYNAPGALVVG 165 (408)
T ss_pred EEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccc--------------cchhhccCceEEEcCCCcEEEc
Confidence 33444444444322223344678899999999999999975321 1223578999999999999999
Q ss_pred eeeeCCCCCeeeeecCCeeEEEEcceecc
Q 015569 219 CSLSNCDDGLVDAIHGSTAITISNNFMTH 247 (404)
Q Consensus 219 cS~s~~~DgliDv~~gs~~VTISnn~f~~ 247 (404)
+.+|...|+... .-|+.-+++.|.|.+
T Consensus 166 ndisy~rDgIy~--~~S~~~~~~gnr~~~ 192 (408)
T COG3420 166 NDISYGRDGIYS--DTSQHNVFKGNRFRD 192 (408)
T ss_pred CccccccceEEE--cccccceecccchhh
Confidence 999999999884 456677777777764
No 39
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=94.31 E-value=0.47 Score=51.44 Aligned_cols=99 Identities=17% Similarity=0.268 Sum_probs=64.3
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcceE-EeC------Cc------eEEEeeeceEE
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GP------CITIQYVTNII 171 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~------G~------gi~i~~a~NVI 171 (404)
|+.+||.. +..++|||=+.|+-+ +.+.| .+|+||.|.|...+ |.+ |. .+. ..+++++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~-v~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLA-VSGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEE-EECCCeE
Confidence 77788853 445777777777643 55555 57999999987543 332 21 122 3589999
Q ss_pred EEceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeee
Q 015569 172 IHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (404)
Q Consensus 172 IrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliD 230 (404)
.+||.|++-... ...-|+-+. .+.++-+-+|.|.-..|=|.+
T Consensus 321 a~nitf~Ntag~-----------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~ 363 (541)
T PLN02416 321 ARDITIENTAGP-----------------EKHQAVALRVNADLVALYRCTINGYQDTLYV 363 (541)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCccEEEEcceEecccchhcc
Confidence 999999985211 123344443 468888889998876665553
No 40
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=94.13 E-value=0.56 Score=50.64 Aligned_cols=100 Identities=19% Similarity=0.255 Sum_probs=64.3
Q ss_pred hHHHHhhc-----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcceE-EeC------Cce-----EEEeeeceEE
Q 015569 112 TLRYAVIQ-----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-----ITIQYVTNII 171 (404)
Q Consensus 112 sLR~av~~-----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~------G~g-----i~i~~a~NVI 171 (404)
|+.+||.. +..|++||=+.|+-+ +.+.| .+|+||.|.|..-+ |.+ |.+ -....++|++
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v~~~~F~ 316 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAAMGDGFI 316 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEEEcCCeE
Confidence 78888852 224677776777743 45555 68999999987543 331 211 1124689999
Q ss_pred EEceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeee
Q 015569 172 IHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (404)
Q Consensus 172 IrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliD 230 (404)
.+||.|++-... ..+-|+.+. .+..+.+.+|.|.-..|=|.+
T Consensus 317 a~nitf~Ntag~-----------------~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~ 359 (529)
T PLN02170 317 ARDITFVNSAGP-----------------NSEQAVALRVGSDKSVVYRCSVEGYQDSLYT 359 (529)
T ss_pred EEeeEEEecCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCCccee
Confidence 999999985211 123344443 477888899999887666554
No 41
>PLN02432 putative pectinesterase
Probab=93.91 E-value=0.69 Score=46.47 Aligned_cols=113 Identities=20% Similarity=0.321 Sum_probs=70.9
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcceE-EeC--C------ceEEEeeeceEEEEce
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG--G------PCITIQYVTNIIIHGL 175 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~--G------~gi~i~~a~NVIIrnL 175 (404)
|+.+||.. +..+++||=+.|+- .+.|.| .+|+||.|.+..-+ |.. + +.+. ..++|++.+||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~-v~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLS-VLASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEE-EECCCeEEEee
Confidence 67777743 22345555555643 355555 68999999876433 321 1 1222 36899999999
Q ss_pred EEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcceeccc
Q 015569 176 NIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHH 248 (404)
Q Consensus 176 ~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~H 248 (404)
+|++..+ ..+-|+.+. .+.++-+.+|.|.-..|=|++ . ...--+.+|++..+
T Consensus 102 t~~Nt~g------------------~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~-~--~gr~yf~~c~I~G~ 154 (293)
T PLN02432 102 TIQNTFG------------------SSGKAVALRVAGDRAAFYGCRILSYQDTLLD-D--TGRHYYRNCYIEGA 154 (293)
T ss_pred EEEeCCC------------------CCCceEEEEEcCCcEEEEcceEecccceeEE-C--CCCEEEEeCEEEec
Confidence 9997532 123455554 578899999999988888775 1 23445566666643
No 42
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=93.68 E-value=0.69 Score=47.39 Aligned_cols=133 Identities=24% Similarity=0.407 Sum_probs=64.6
Q ss_pred ceeeeccCeeEeccCcceEEeC--CceEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEE-eCCee
Q 015569 137 EELIMNSFKTIDGRGASVHIAG--GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSI-FGGTH 213 (404)
Q Consensus 137 ~~L~v~snkTI~G~ga~~~I~~--G~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi-~gs~n 213 (404)
..++|+.-+|+-|.-..+-=++ |--+++ .+-++||++|++|+.-.. -| .-+-+|-+ ..++-
T Consensus 45 g~~vInr~l~l~ge~ga~l~g~g~G~~vtv-~aP~~~v~Gl~vr~sg~~-------lp--------~m~agI~v~~~at~ 108 (408)
T COG3420 45 GNFVINRALTLRGENGAVLDGGGKGSYVTV-AAPDVIVEGLTVRGSGRS-------LP--------AMDAGIFVGRTATG 108 (408)
T ss_pred ccEEEccceeeccccccEEecCCcccEEEE-eCCCceeeeEEEecCCCC-------cc--------cccceEEeccCccc
Confidence 3444555555555522211122 323443 689999999999952110 00 01122222 13444
Q ss_pred EEEeeeeeeCCCCCeeeeecCCeeEEEEcceec-----------------ccCeeeeecCCCCccCCCcceEEEEeeeeC
Q 015569 214 IWVDHCSLSNCDDGLVDAIHGSTAITISNNFMT-----------------HHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (404)
Q Consensus 214 VWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~-----------------~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~ 276 (404)
--|.||.+-.+.-|.. .+++..+-|--|.+. +...+...|..-++..|...--|=+||-|.
T Consensus 109 A~Vr~N~l~~n~~Gi~--l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~~~ 186 (408)
T COG3420 109 AVVRHNDLIGNSFGIY--LHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNVFK 186 (408)
T ss_pred ceEEcccccccceEEE--EeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcccccceec
Confidence 4444444444444333 223333333333222 223444556666666676666677788883
Q ss_pred CCCcCCCccccCCE
Q 015569 277 EGLVQRIPRCRHGY 290 (404)
Q Consensus 277 ~~~~~R~Pr~R~G~ 290 (404)
+ .|+--||||.
T Consensus 187 -g--nr~~~~Rygv 197 (408)
T COG3420 187 -G--NRFRDLRYGV 197 (408)
T ss_pred -c--cchhheeeeE
Confidence 3 3666677773
No 43
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=93.19 E-value=0.88 Score=49.44 Aligned_cols=102 Identities=18% Similarity=0.310 Sum_probs=64.9
Q ss_pred Cch---hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcceEE-e------CCce-E---E-Eee
Q 015569 109 KPG---TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVHI-A------GGPC-I---T-IQY 166 (404)
Q Consensus 109 ~pG---sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I-~------~G~g-i---~-i~~ 166 (404)
|.| |+.+||.. +..|+|||=+.|+- ++.+.| .+|+||.|.|...+| . +|.+ . + ...
T Consensus 244 GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~ 321 (548)
T PLN02301 244 GSGKYKTVKEAVASAPDNSKTRYVIYVKKGTY--KENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAAV 321 (548)
T ss_pred CCCCcccHHHHHHhhhhcCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEEE
Confidence 555 77788853 33467777677774 355555 579999999875433 2 2221 0 1 136
Q ss_pred eceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCee
Q 015569 167 VTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLV 229 (404)
Q Consensus 167 a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~Dgli 229 (404)
+++++.+||.|++-... ...-|+-+. .+..+-+.+|.|.-..|=|.
T Consensus 322 ~~~F~a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy 368 (548)
T PLN02301 322 GDGFIAQDIWFQNTAGP-----------------EKHQAVALRVSADQAVINRCRIDAYQDTLY 368 (548)
T ss_pred CCceEEEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeeeeccccce
Confidence 89999999999975210 123344443 46888899999987666554
No 44
>PLN02773 pectinesterase
Probab=92.98 E-value=1.4 Score=44.68 Aligned_cols=113 Identities=12% Similarity=0.149 Sum_probs=68.0
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcce-EEeC----------------C------ce
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASV-HIAG----------------G------PC 161 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~-~I~~----------------G------~g 161 (404)
|+.+||.. +..+++||=+.|+-+ +.|.| .+|+||.|++..- .|.. | ..
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~Y~--E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGVYR--QPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCceEE--EEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 67777743 223555555566533 55555 5689999987643 2321 1 11
Q ss_pred EEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeeeeecCCeeEEE
Q 015569 162 ITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITI 240 (404)
Q Consensus 162 i~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliDv~~gs~~VTI 240 (404)
+. ..++|++.+||+|++-.+. ..+-|+.+. .+..+-+.+|.|.-..|=|.+- ...--+
T Consensus 97 v~-v~a~~f~a~nlT~~Nt~~~-----------------~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~---~gr~yf 155 (317)
T PLN02773 97 VI-VEGEDFIAENITFENSAPE-----------------GSGQAVAIRVTADRCAFYNCRFLGWQDTLYLH---YGKQYL 155 (317)
T ss_pred EE-EECCCeEEEeeEEEeCCCC-----------------CCCcEEEEEecCccEEEEccEeecccceeEeC---CCCEEE
Confidence 22 3689999999999985321 123444443 4688899999988877766641 123444
Q ss_pred Ecceecc
Q 015569 241 SNNFMTH 247 (404)
Q Consensus 241 Snn~f~~ 247 (404)
.+|+++.
T Consensus 156 ~~c~IeG 162 (317)
T PLN02773 156 RDCYIEG 162 (317)
T ss_pred EeeEEee
Confidence 5555553
No 45
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=92.92 E-value=1.2 Score=47.81 Aligned_cols=99 Identities=18% Similarity=0.269 Sum_probs=63.1
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcceE-EeC------Cce----EE-EeeeceEEE
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC----IT-IQYVTNIII 172 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~------G~g----i~-i~~a~NVII 172 (404)
|+.+||.. +..+++||=+.|+-+ +.+.| .+|+||.|.|..-+ |.+ |.. -+ ...++++|.
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v~g~gF~A 288 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGVYD--EIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVASNGDGFIG 288 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCeeE--EEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEEEcCCeEE
Confidence 67888843 333566665666543 55555 57999999987543 331 211 01 136899999
Q ss_pred EceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCee
Q 015569 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLV 229 (404)
Q Consensus 173 rnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~Dgli 229 (404)
+||.|++-... ..+-|+-+. .+...-+.+|+|.-..|=|.
T Consensus 289 ~nitf~Ntag~-----------------~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy 329 (509)
T PLN02488 289 IDMCFRNTAGP-----------------AKGPAVALRVSGDMSVIYRCRIEGYQDALY 329 (509)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEecCCcEEEEcceeeccCccee
Confidence 99999974210 134566664 57888999999987655554
No 46
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=92.68 E-value=1 Score=48.76 Aligned_cols=100 Identities=16% Similarity=0.253 Sum_probs=63.4
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcceE-EeC------Cce-----EEEeeeceEEE
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-----ITIQYVTNIII 172 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~------G~g-----i~i~~a~NVII 172 (404)
|+.+||.. +..|+|||=+.|+-+ +.+.| .+|+||.|.|..-+ |.+ |.+ -....+++++.
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~GvY~--E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v~~~~F~a 323 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGVYK--ENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAVSGRGFIA 323 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCeee--EEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEEEcCCeEE
Confidence 67778743 334667776667543 34444 58999999986543 331 211 01246899999
Q ss_pred EceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeee
Q 015569 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (404)
Q Consensus 173 rnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliD 230 (404)
+||.|++-... .+.-|+-+. .+.++-+.+|.|.-..|=|.+
T Consensus 324 ~nit~~Ntag~-----------------~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~ 365 (537)
T PLN02506 324 RDITFRNTAGP-----------------QNHQAVALRVDSDQSAFYRCSMEGYQDTLYA 365 (537)
T ss_pred EeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEcceeeccccccee
Confidence 99999975210 123344443 478899999999887766654
No 47
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=92.59 E-value=1.6 Score=47.36 Aligned_cols=115 Identities=18% Similarity=0.249 Sum_probs=72.6
Q ss_pred hHHHHhhc---CC----CeEEEEccceEEEeCceeee---ccCeeEeccCcceE-Ee------CCc------eEEEeeec
Q 015569 112 TLRYAVIQ---DE----PLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IA------GGP------CITIQYVT 168 (404)
Q Consensus 112 sLR~av~~---~~----P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G~------gi~i~~a~ 168 (404)
|+.+||.. .. -|+|||=+.|+-+ +.|.| .+|+||.|.|..-+ |. +|. .+. ..++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~-v~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFA-VSGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEE-EECC
Confidence 78888853 11 2677777777654 44555 68999999986543 33 221 122 3679
Q ss_pred eEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCe-----------------ee
Q 015569 169 NIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGL-----------------VD 230 (404)
Q Consensus 169 NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~Dgl-----------------iD 230 (404)
++|.+||.|++-... ...-|+-+. .+...-+.+|+|.-..|=| +|
T Consensus 314 ~F~a~~it~~Ntag~-----------------~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVD 376 (538)
T PLN03043 314 RFVAVDVTFRNTAGP-----------------EKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVD 376 (538)
T ss_pred CEEEEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccc
Confidence 999999999975210 133455554 5778888999998765544 45
Q ss_pred eecCCeeEEEEcceec
Q 015569 231 AIHGSTAITISNNFMT 246 (404)
Q Consensus 231 v~~gs~~VTISnn~f~ 246 (404)
.+-|.-.+-+++|.|.
T Consensus 377 FIFG~a~avfq~c~i~ 392 (538)
T PLN03043 377 FIFGNAAAIFQNCNLY 392 (538)
T ss_pred eEeecceeeeeccEEE
Confidence 5555555566666653
No 48
>PLN02304 probable pectinesterase
Probab=92.38 E-value=2.1 Score=44.61 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=75.5
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcceE-EeC--Cc----e-----EEEeeeceEEE
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG--GP----C-----ITIQYVTNIII 172 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~--G~----g-----i~i~~a~NVII 172 (404)
|+.+||.. +..+++||=+.|+-+ +.|.| .+|+||.|+|..-+ |.. .. + -....++|++.
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~GvY~--EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v~a~~F~a 166 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGIYY--EKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQVFASNFIA 166 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeEeE--EEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEEECCCeEE
Confidence 78888843 233566665566543 55666 68999999987533 321 10 0 11135899999
Q ss_pred EceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcceeccc
Q 015569 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHH 248 (404)
Q Consensus 173 rnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~H 248 (404)
+||+|++..+.. .+ | ..+.-|+.+. .+..+-+.+|.|.-..|=|.+- ...--+.+|++..+
T Consensus 167 ~nITf~Nta~~~------~~---g---~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIeG~ 228 (379)
T PLN02304 167 KNISFMNVAPIP------KP---G---DVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQGS 228 (379)
T ss_pred EeeEEEecCCCC------CC---C---CCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEccc
Confidence 999999864321 00 0 1234455554 5889999999999998888862 23455667777643
No 49
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=92.27 E-value=1.4 Score=48.91 Aligned_cols=166 Identities=14% Similarity=0.150 Sum_probs=96.8
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcceE-Ee------CCce-E---E-EeeeceEEE
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IA------GGPC-I---T-IQYVTNIII 172 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G~g-i---~-i~~a~NVII 172 (404)
|+.+||.. +..|+||+=+.|+- ++.+.| ..|+||.|.|..-+ |. +|.+ . + ...+++++.
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v~g~~F~a 341 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGIY--KEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAIVGDHFIA 341 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCce--EEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEEECCCeEE
Confidence 78888854 33466666666653 345555 46889999987543 32 1211 0 1 136899999
Q ss_pred EceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCC-----------------CCeeeeecC
Q 015569 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (404)
Q Consensus 173 rnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~-----------------DgliDv~~g 234 (404)
|||.|++-... .+.-|+-+. .+...-+.+|.|.-.. .|.+|++-|
T Consensus 342 ~nitf~Ntag~-----------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG 404 (670)
T PLN02217 342 KNIGFENTAGA-----------------IKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFG 404 (670)
T ss_pred EeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEec
Confidence 99999975311 233455554 5788888888887533 466677777
Q ss_pred CeeEEEEcceecccC-----eeeeecCCCCccCCCcceEEEEeeeeCCCCc-------------CCCccccCCEEEEEcC
Q 015569 235 STAITISNNFMTHHD-----KVMLLGHSDTYTQDKNMQVTIAFNHFGEGLV-------------QRIPRCRHGYFHVVNN 296 (404)
Q Consensus 235 s~~VTISnn~f~~H~-----k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~-------------~R~Pr~R~G~~HvvNN 296 (404)
.-.+-+++|.|.--. +..+-=++.. ..+...-..|+++.+. ... +| |--.+..+-+.|.
T Consensus 405 ~a~avfq~C~I~~r~~~~~~~~~ITAqgr~-~~~~~tGfvf~~C~i~-~~~~~~~~~~~~~~yLGR-PW~~ysrvVf~~t 481 (670)
T PLN02217 405 DAAAVFQNCTLLVRKPLLNQACPITAHGRK-DPRESTGFVLQGCTIV-GEPDYLAVKETSKAYLGR-PWKEYSRTIIMNT 481 (670)
T ss_pred CceEEEEccEEEEccCCCCCceeEecCCCC-CCCCCceEEEEeeEEe-cCccccccccccceeecc-CCCCCceEEEEec
Confidence 778889999885311 1111111111 1123446778887773 221 23 2223556677777
Q ss_pred eee
Q 015569 297 DYT 299 (404)
Q Consensus 297 ~y~ 299 (404)
++.
T Consensus 482 ~l~ 484 (670)
T PLN02217 482 FIP 484 (670)
T ss_pred ccC
Confidence 764
No 50
>PLN02916 pectinesterase family protein
Probab=92.23 E-value=1.7 Score=46.73 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=62.8
Q ss_pred hHHHHhhc-------CCCeEEEEccceEEEeCceeee---ccCeeEeccCcceE-Ee------CCce-E---E-Eeeece
Q 015569 112 TLRYAVIQ-------DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IA------GGPC-I---T-IQYVTN 169 (404)
Q Consensus 112 sLR~av~~-------~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G~g-i---~-i~~a~N 169 (404)
|+.+||.. +..|++||=+.|+-+ +.+.| .+|+||.|.|..-+ |. +|.. . + ...+++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~ 278 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGVSGDG 278 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEEECCC
Confidence 67888743 234677776667544 45555 56899999987543 33 1211 0 1 136899
Q ss_pred EEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeee
Q 015569 170 IIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (404)
Q Consensus 170 VIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliD 230 (404)
++.|||+|++-.+. ...-|+-+. .+...-+.+|.|.-..|=|.+
T Consensus 279 F~A~nitf~Ntag~-----------------~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~ 323 (502)
T PLN02916 279 FWARDITFENTAGP-----------------HKHQAVALRVSSDLSVFYRCSFKGYQDTLFV 323 (502)
T ss_pred EEEEeeEEEeCCCC-----------------CCCceEEEEEcCCcEEEEeeeEeccCceeEe
Confidence 99999999975311 123344443 468888999999876665554
No 51
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=92.20 E-value=1.7 Score=47.70 Aligned_cols=100 Identities=16% Similarity=0.242 Sum_probs=63.4
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcceE-EeC------CceE----E-EeeeceEEE
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPCI----T-IQYVTNIII 172 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~------G~gi----~-i~~a~NVII 172 (404)
|+.+||.. +..|++|+=+.|+-+ +.+.| .+|+||.|.|..-+ |.+ |.+- + ...+++++.
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v~~~~F~a 376 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVALGEGFMA 376 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEEEcCCEEE
Confidence 78888854 234666666666544 44555 56899999987543 331 2110 1 136899999
Q ss_pred EceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeee
Q 015569 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (404)
Q Consensus 173 rnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliD 230 (404)
+||.|++-... ...-|+-+. .+...-+.+|.|.-..|=|.+
T Consensus 377 ~nitf~Ntag~-----------------~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~ 418 (596)
T PLN02745 377 KSMGFRNTAGP-----------------EKHQAVAIRVQSDRSIFLNCRFEGYQDTLYA 418 (596)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeEEeeccccccc
Confidence 99999985211 123444443 578899999999886665553
No 52
>PLN02314 pectinesterase
Probab=92.18 E-value=1.3 Score=48.49 Aligned_cols=115 Identities=22% Similarity=0.323 Sum_probs=71.9
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcceE-EeC------Cce-E---E-EeeeceEEE
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-I---T-IQYVTNIII 172 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~------G~g-i---~-i~~a~NVII 172 (404)
|+.+||.. +..|+||+=+.|+-+ +.+.| ..|+|+.|.|..-+ |.+ |.. . + ...+++++.
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v~~~~F~a 369 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAAAGKGFIA 369 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEEEcCCeEE
Confidence 78888853 334677776677643 44544 57899999986533 331 211 0 1 136899999
Q ss_pred EceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCee-----------------eeecC
Q 015569 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLV-----------------DAIHG 234 (404)
Q Consensus 173 rnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~Dgli-----------------Dv~~g 234 (404)
|||.|++-... ...-|+.+. ++...-+.+|.|.-..|=|. |++-|
T Consensus 370 ~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG 432 (586)
T PLN02314 370 KDMGFINTAGA-----------------AKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRDCDITGTIDFIFG 432 (586)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeEEEeccchheeCCCCEEEEeeEEEeccceecc
Confidence 99999985211 123455554 57888899999987655444 44445
Q ss_pred CeeEEEEccee
Q 015569 235 STAITISNNFM 245 (404)
Q Consensus 235 s~~VTISnn~f 245 (404)
.-.+-+++|.|
T Consensus 433 ~a~avf~~c~i 443 (586)
T PLN02314 433 NAAVVFQNCNI 443 (586)
T ss_pred CceeeeeccEE
Confidence 55555556655
No 53
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=92.05 E-value=2 Score=46.61 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=61.2
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcce-EEeC------Cce----EE-EeeeceEEE
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASV-HIAG------GPC----IT-IQYVTNIII 172 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~-~I~~------G~g----i~-i~~a~NVII 172 (404)
|+.+||.. +..+++|+=+.|+-+ +.+.| .+|+||.|.|..- .|.. |.+ =+ ...+++++.
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~a~~F~a 309 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGVKGKGFIA 309 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEEEECCCEEE
Confidence 66667743 223455554555544 44545 5789999988653 3331 211 01 136899999
Q ss_pred EceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeee
Q 015569 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (404)
Q Consensus 173 rnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliD 230 (404)
+||.|++-.+. ...-|+-+. .+..+-+.+|.|.-..|=|.+
T Consensus 310 ~nitf~Ntag~-----------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~ 351 (530)
T PLN02933 310 KDISFVNYAGP-----------------AKHQAVALRSGSDHSAFYRCEFDGYQDTLYV 351 (530)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEEeEEEeccccccc
Confidence 99999974211 123455554 578899999999887666654
No 54
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=92.04 E-value=1.6 Score=47.96 Aligned_cols=116 Identities=18% Similarity=0.256 Sum_probs=73.2
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcceE-Ee------CCce-E---E-EeeeceEEE
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IA------GGPC-I---T-IQYVTNIII 172 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G~g-i---~-i~~a~NVII 172 (404)
|+.+||.. +..|+|||=+.|+-+ +.+.| .+|+||.|.|..-+ |. +|.. . + ...+++++.
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~GvY~--E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v~~~~F~a 366 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGVYR--ENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAAVGERFLA 366 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCceeE--EEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEEECCCeEE
Confidence 77788853 334667776667543 44555 57899999987543 33 1211 0 1 135799999
Q ss_pred EceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCC-----------------CCeeeeecC
Q 015569 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (404)
Q Consensus 173 rnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~-----------------DgliDv~~g 234 (404)
|||.|++-... ...-|+-+. ++...-+-+|+|.-.. .|.+|.+-|
T Consensus 367 ~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG 429 (587)
T PLN02313 367 RDITFQNTAGP-----------------SKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFG 429 (587)
T ss_pred EeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceecc
Confidence 99999985311 123444443 5788889999988644 455566666
Q ss_pred CeeEEEEcceec
Q 015569 235 STAITISNNFMT 246 (404)
Q Consensus 235 s~~VTISnn~f~ 246 (404)
.-.+-+++|.|.
T Consensus 430 ~a~avfq~c~i~ 441 (587)
T PLN02313 430 NAAAVLQDCDIN 441 (587)
T ss_pred ceeEEEEccEEE
Confidence 666777777775
No 55
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=92.03 E-value=1 Score=47.47 Aligned_cols=114 Identities=20% Similarity=0.209 Sum_probs=48.9
Q ss_pred CCCcEEEeC------CeeEEEeeeeeeCC--CCCeeeeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEEee
Q 015569 202 DGDGVSIFG------GTHIWVDHCSLSNC--DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFN 273 (404)
Q Consensus 202 ~~DaIsi~g------s~nVWIDHcS~s~~--~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N 273 (404)
++.+|.|-. .++..|.|+-|..| .-|.|+++ |..-||.+|.|.+..=.+-+=|.. ..|+..|
T Consensus 183 ggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISvK--S~~N~ir~Ntf~es~G~ltlRHGn--------~n~V~gN 252 (425)
T PF14592_consen 183 GGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISVK--SSDNTIRNNTFRESQGSLTLRHGN--------RNTVEGN 252 (425)
T ss_dssp ---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEEE--SBT-EEES-EEES-SSEEEEEE-S--------S-EEES-
T ss_pred CceeEEEecccccccccceeeecchhhhcCCceeEEEee--cCCceEeccEEEeccceEEEecCC--------CceEecc
Confidence 455566521 35666666666664 34455543 556677777777654333333332 5688888
Q ss_pred eeCCCCcC--CCcccc-CCEEE-EEcCeeeCCcc----------eeeccC------CCceeeeeccEEeCCCC
Q 015569 274 HFGEGLVQ--RIPRCR-HGYFH-VVNNDYTHWEM----------YAIGGS------ANPTINSQGNRFAAPDR 326 (404)
Q Consensus 274 ~f~~~~~~--R~Pr~R-~G~~H-vvNN~y~~w~~----------yaigg~------~~~~i~~egN~F~~~~~ 326 (404)
+|- +... ..+-+| .|.-| |+|||+++-.. +++-.+ .-..+.+++|-|++...
T Consensus 253 ~Fi-Gng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~ 324 (425)
T PF14592_consen 253 VFI-GNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKS 324 (425)
T ss_dssp EEE-E-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-SE
T ss_pred EEe-cCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccCC
Confidence 883 2221 234444 24444 88999976432 222111 11236788888888764
No 56
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=91.47 E-value=2 Score=46.51 Aligned_cols=100 Identities=15% Similarity=0.188 Sum_probs=62.9
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcce-EEe------CCce----EE-EeeeceEEE
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASV-HIA------GGPC----IT-IQYVTNIII 172 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~-~I~------~G~g----i~-i~~a~NVII 172 (404)
|+.+||.. +..+++||=+.|+-+ +.+.| .+|+||.|.|..- .|. +|.+ =+ ...+++++.
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~F~a 297 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVYL--ENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAVSGRGFIA 297 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCceeE--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEEECCCeEE
Confidence 67778743 233566665666543 44555 5789999998653 332 2221 01 136899999
Q ss_pred EceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeee
Q 015569 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (404)
Q Consensus 173 rnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliD 230 (404)
+||.|++-.+. ..+-|+-+. .+...-+.+|.|.-..|=|.+
T Consensus 298 ~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~ 339 (520)
T PLN02201 298 RDITFQNTAGP-----------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYT 339 (520)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEe
Confidence 99999985321 123445554 468888999999887766654
No 57
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=91.39 E-value=2.3 Score=46.60 Aligned_cols=100 Identities=19% Similarity=0.276 Sum_probs=63.4
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcceE-EeCCce----E-E------EeeeceEEE
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAGGPC----I-T------IQYVTNIII 172 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~G~g----i-~------i~~a~NVII 172 (404)
|+.+||.. +..|+|||=+.|+-+=+ .|.| .+|+||.|.|..-+ |.++.. . + ...+++++.
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v~~~~F~a 364 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAATGAGFIA 364 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEEEcCCEEE
Confidence 67888853 33467777667765421 2555 57999999987543 443211 1 1 136899999
Q ss_pred EceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCee
Q 015569 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLV 229 (404)
Q Consensus 173 rnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~Dgli 229 (404)
|||.|++-.+. ...-|+-+. .+...-+.+|.|.-..|=|.
T Consensus 365 ~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy 405 (587)
T PLN02484 365 RDMTFENWAGP-----------------AKHQAVALRVGADHAVVYRCNIIGYQDTLY 405 (587)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCcccc
Confidence 99999985211 123455554 57888888998887665554
No 58
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=91.30 E-value=2.4 Score=46.38 Aligned_cols=98 Identities=16% Similarity=0.238 Sum_probs=61.9
Q ss_pred hHHHHhhc-------CCCeEEEEccceEEEeCceeee---ccCeeEeccCcce-EEe------CCc------eEEEeeec
Q 015569 112 TLRYAVIQ-------DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASV-HIA------GGP------CITIQYVT 168 (404)
Q Consensus 112 sLR~av~~-------~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~-~I~------~G~------gi~i~~a~ 168 (404)
|+.+||.. +.-+++|+=+.|+-+ +.+.| .+|+||.|.|..- .|. +|. .+. ..++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~-v~~~ 340 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFA-VVGQ 340 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEE-EECC
Confidence 67778743 122566666667654 44555 6789999998643 333 222 122 3679
Q ss_pred eEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCee
Q 015569 169 NIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLV 229 (404)
Q Consensus 169 NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~Dgli 229 (404)
+++.+||.|++-... ...-|+-+. ++...-+.+|.|.-..|=|.
T Consensus 341 ~F~a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy 385 (566)
T PLN02713 341 NFVAVNITFRNTAGP-----------------AKHQAVALRSGADLSTFYSCSFEAYQDTLY 385 (566)
T ss_pred CeEEEeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEeeeeccCCcceE
Confidence 999999999985211 123455544 57788888898887666554
No 59
>PLN02634 probable pectinesterase
Probab=91.26 E-value=3.8 Score=42.41 Aligned_cols=118 Identities=16% Similarity=0.282 Sum_probs=70.8
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcceEEe-----------CC--------ceEEEe
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVHIA-----------GG--------PCITIQ 165 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I~-----------~G--------~gi~i~ 165 (404)
|+.+||.. +..+++||=+.|+- .+.|.| .+|+||.|.|...+|. +| ..+. .
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~GvY--~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~-V 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGFY--REKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVT-V 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCceE--EEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEE-E
Confidence 57777743 22345555555653 355555 6899999998764432 11 1122 3
Q ss_pred eeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcce
Q 015569 166 YVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNF 244 (404)
Q Consensus 166 ~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~ 244 (404)
.+++++.+||+|++-.+.. .+ | ..++-|+.+. .+.++-+.+|.|.-..|=|.+- ...--+.+|+
T Consensus 147 ~a~~F~a~niTf~Nta~~~------~~---g---~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~---~gR~yf~~Cy 211 (359)
T PLN02634 147 YANYFTARNISFKNTAPAP------MP---G---MQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDD---AGRHYFKECY 211 (359)
T ss_pred ECCCeEEEeCeEEeCCccC------CC---C---CCCCceEEEEecCCcEEEEEeEEecccceeeeC---CCCEEEEeeE
Confidence 6899999999999864311 00 1 1234455443 4778999999999888877751 2344455666
Q ss_pred ecc
Q 015569 245 MTH 247 (404)
Q Consensus 245 f~~ 247 (404)
+..
T Consensus 212 IeG 214 (359)
T PLN02634 212 IEG 214 (359)
T ss_pred Ecc
Confidence 654
No 60
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=91.12 E-value=2.6 Score=45.83 Aligned_cols=113 Identities=18% Similarity=0.228 Sum_probs=69.6
Q ss_pred hHHHHhhc------CCCeEEEEccceEEEeCceeee---ccCeeEeccCcce-EEeC------Cce-E---E-EeeeceE
Q 015569 112 TLRYAVIQ------DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASV-HIAG------GPC-I---T-IQYVTNI 170 (404)
Q Consensus 112 sLR~av~~------~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~-~I~~------G~g-i---~-i~~a~NV 170 (404)
|+.+||.. +..|++|+=+.|+-+ +.+.| .+|+|+.|.|..- .|.+ |.+ . + ...++++
T Consensus 237 TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v~~~~F 314 (539)
T PLN02995 237 TVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGIEGLHF 314 (539)
T ss_pred CHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEEECCCe
Confidence 78888853 123566665556543 44545 5799999998753 3432 111 0 1 1368999
Q ss_pred EEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcceec
Q 015569 171 IIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMT 246 (404)
Q Consensus 171 IIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~ 246 (404)
+.+||+|++-... ..+-|+-+. .+....+.+|.|.-..|=|.+- +..--..+|++.
T Consensus 315 ~a~nitf~Ntag~-----------------~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~ 371 (539)
T PLN02995 315 IAKGITFRNTAGP-----------------AKGQAVALRSSSDLSIFYKCSIEGYQDTLMVH---SQRQFYRECYIY 371 (539)
T ss_pred EEEeeEEEeCCCC-----------------CCCceEEEEEcCCceeEEcceEecccchhccC---CCceEEEeeEEe
Confidence 9999999974210 134555554 5788999999999877766641 223344455554
No 61
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=90.56 E-value=1 Score=48.89 Aligned_cols=144 Identities=17% Similarity=0.219 Sum_probs=84.7
Q ss_pred CCCeEEEEccceEEEeCc------ee-----eeccCeeEeccCcce-EEeCCceEEEeeeceEEEEceEEeecccCCCcc
Q 015569 120 DEPLWIIFARDMTIRLKE------EL-----IMNSFKTIDGRGASV-HIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAM 187 (404)
Q Consensus 120 ~~P~~IvF~~~g~I~L~~------~L-----~v~snkTI~G~ga~~-~I~~G~gi~i~~a~NVIIrnL~i~~~~~g~~~~ 187 (404)
..|+.|.|...-.+.+.. ++ .--+|+||.+..-+. ++.+-.||.+..++||.|.+.+|.- ++..+
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt---gDD~I 312 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT---GDDCI 312 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec---CCceE
Confidence 478999998776666531 11 113455555543220 0001226788889999999999963 22111
Q ss_pred cccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeeeee---cCCeeEEEEcceecccCeeeeecCCCCccCC
Q 015569 188 VRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAI---HGSTAITISNNFMTHHDKVMLLGHSDTYTQD 263 (404)
Q Consensus 188 i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliDv~---~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d 263 (404)
..-+ + ...|+-... -+++|||-||.|+.++-+++.-. .+..+|++-+|.|.+-+.+..|...+.-. .
T Consensus 313 ~iks--g------~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-G 383 (542)
T COG5434 313 AIKS--G------AGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-G 383 (542)
T ss_pred Eeec--c------cCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccc-e
Confidence 1000 0 111111111 25889999999999888887633 24579999999999988877776554322 1
Q ss_pred CcceEEEEeeee
Q 015569 264 KNMQVTIAFNHF 275 (404)
Q Consensus 264 ~~~~vTi~~N~f 275 (404)
..-+++|.-|..
T Consensus 384 ~v~nI~~~~~~~ 395 (542)
T COG5434 384 GVRNIVFEDNKM 395 (542)
T ss_pred eEEEEEEecccc
Confidence 122455544443
No 62
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=90.53 E-value=2.9 Score=45.74 Aligned_cols=99 Identities=15% Similarity=0.231 Sum_probs=62.8
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcce-EEeC------C-ceE----E-EeeeceEE
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASV-HIAG------G-PCI----T-IQYVTNII 171 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~-~I~~------G-~gi----~-i~~a~NVI 171 (404)
|+.+||.. +..|++|+=+.|+-+ +.+.| .+|+||.|.|..- .|.+ | .+- + ...+++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v~~~~F~ 350 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAINGDHFT 350 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEEEcCCEE
Confidence 78888853 233566666666544 44555 5799999998643 3431 2 110 0 13689999
Q ss_pred EEceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCee
Q 015569 172 IHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLV 229 (404)
Q Consensus 172 IrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~Dgli 229 (404)
.|||.|++-... .+.-|+-+. .+...-+.+|.|.-..|=|.
T Consensus 351 a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy 392 (572)
T PLN02990 351 AKNIGFENTAGP-----------------EGHQAVALRVSADYAVFYNCQIDGYQDTLY 392 (572)
T ss_pred EEeeEEEeCCCC-----------------CCCceEEEEEcCCcEEEEeeeEecccchhc
Confidence 999999975311 134555554 57888899999987655444
No 63
>PLN02665 pectinesterase family protein
Probab=90.06 E-value=5.5 Score=41.33 Aligned_cols=118 Identities=14% Similarity=0.190 Sum_probs=73.7
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcce-EEeCC-----------ceEEEeeeceEEE
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASV-HIAGG-----------PCITIQYVTNIII 172 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~-~I~~G-----------~gi~i~~a~NVII 172 (404)
|+.+||.. +..|+|||=+.|+-+ +.|.| .+++||.|++..- .|... +.+ ...+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv-~v~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATL-IVESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEE-EEECCCeEE
Confidence 78888853 334667776667544 55555 6789999997643 33311 112 246899999
Q ss_pred EceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcceecc
Q 015569 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTH 247 (404)
Q Consensus 173 rnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~ 247 (404)
+||.|++-.+.+.+ . ..+.-|+.+. .+..+-+.+|.|.-..|=|.+- ...--+.+|++..
T Consensus 159 ~nitf~Nta~~~~~------~------~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~---~gr~yf~~CyIeG 219 (366)
T PLN02665 159 ANIIIKNSAPRPDG------K------RKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDD---KGRHFFKDCYIEG 219 (366)
T ss_pred EeeEEEeCCCCcCC------C------CCCcceEEEEEcCCcEEEEcceeccccceeEeC---CCCEEEEeeEEee
Confidence 99999986432110 0 0122444443 4688999999999988888762 2234456666664
No 64
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=89.50 E-value=4 Score=41.01 Aligned_cols=115 Identities=15% Similarity=0.257 Sum_probs=66.1
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcceE-EeCC------------ceEEEeeeceEE
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAGG------------PCITIQYVTNII 171 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~G------------~gi~i~~a~NVI 171 (404)
|+.+||.. +..+++||=..|+-+ +.|.| .+++||.|.+..-+ |... ..+. ..++|++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~-v~a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFS-VNADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEE-E-STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEecccccccccccccccc-cccccee
Confidence 67788753 334667776677655 55655 36999999987533 3311 1122 2589999
Q ss_pred EEceEEeecccCCCcccccCCCCcCCccccCCCcEEEeCCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcceeccc
Q 015569 172 IHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHH 248 (404)
Q Consensus 172 IrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~H 248 (404)
.+||+|++.... .....-|+.+ .++++.+.+|.|.-..|=|.. .....-+.+|++..+
T Consensus 91 ~~nit~~Nt~g~---------------~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~---~~~r~y~~~c~IeG~ 148 (298)
T PF01095_consen 91 AENITFENTAGP---------------SGGQAVALRV-SGDRAAFYNCRFLGYQDTLYA---NGGRQYFKNCYIEGN 148 (298)
T ss_dssp EEEEEEEEHCSG---------------SG----SEEE-T-TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEES
T ss_pred eeeeEEecCCCC---------------cccceeeeee-cCCcEEEEEeEEccccceeee---ccceeEEEeeEEEec
Confidence 999999985210 0123456666 467899999999999998875 233566778888753
No 65
>PLN02497 probable pectinesterase
Probab=88.95 E-value=8.3 Score=39.53 Aligned_cols=120 Identities=14% Similarity=0.206 Sum_probs=72.0
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcce-EEe--CCc------eEEEeeeceEEEEce
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASV-HIA--GGP------CITIQYVTNIIIHGL 175 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~-~I~--~G~------gi~i~~a~NVIIrnL 175 (404)
|+.+||.. +..+++|+=+.|+- ++.+.| .+++||.|+|... .|. ++. .+. ..+++++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~Y--~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~-v~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGLY--REKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFS-TLADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcEE--EEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEE-EecCCeEEEcc
Confidence 57777743 33455555555644 345555 6899999998643 232 111 222 36899999999
Q ss_pred EEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcceecc
Q 015569 176 NIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTH 247 (404)
Q Consensus 176 ~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~ 247 (404)
+|++..+... .+- ...+.-|+.+. .+.++-+.+|.|.-..|=|.+- ...--..+|++..
T Consensus 123 T~~Nt~~~~~---------~~~-~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~IeG 182 (331)
T PLN02497 123 TFANSYNFPS---------KGN-KNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQG 182 (331)
T ss_pred EEEeCCCCcc---------ccC-CCCCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEEe
Confidence 9998542100 000 00123455554 5788999999999988888752 2344556666654
No 66
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=88.83 E-value=3.6 Score=44.96 Aligned_cols=99 Identities=15% Similarity=0.224 Sum_probs=61.7
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCcceE-Ee------CCc-eE---E-EeeeceEEE
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IA------GGP-CI---T-IQYVTNIII 172 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G~-gi---~-i~~a~NVII 172 (404)
|..+||.. +.-|+|||=+.|+-+ +.+.| ..|+||.|.|..-+ |. +|. .. + ...+++++.
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v~~~~f~a 349 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAVFGKGFMA 349 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeEECCCeEE
Confidence 67777743 333566666666543 44555 56899999987533 33 121 10 1 135799999
Q ss_pred EceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCee
Q 015569 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLV 229 (404)
Q Consensus 173 rnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~Dgli 229 (404)
|||.|++-... .+.-|+-+. .+...-+.+|.|.-..|=|.
T Consensus 350 ~~itf~Ntag~-----------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy 390 (565)
T PLN02468 350 RDMGFRNTAGP-----------------IKHQAVALMSSADLSVFYRCTMDAFQDTLY 390 (565)
T ss_pred EEEEEEeCCCC-----------------CCCceEEEEEcCCcEEEEEeEEEeccchhc
Confidence 99999975211 123455554 57889999999987655444
No 67
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=86.63 E-value=0.43 Score=36.59 Aligned_cols=19 Identities=42% Similarity=0.728 Sum_probs=16.2
Q ss_pred cCCCCChhhHHHHhhhhhh
Q 015569 23 ASAVPDPELVVHEVHKSIN 41 (404)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~ 41 (404)
..-+|||++|+++||..|+
T Consensus 22 ~aY~pdP~~Vt~~FN~~V~ 40 (56)
T PF04431_consen 22 AAYVPDPENVTNEFNRHVH 40 (56)
T ss_pred HhcCCCHHHHHHHHHHHHH
Confidence 3458999999999999875
No 68
>PLN02671 pectinesterase
Probab=86.22 E-value=18 Score=37.55 Aligned_cols=118 Identities=13% Similarity=0.158 Sum_probs=70.6
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCc---ceEEeC----------CceE-------EE
Q 015569 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGA---SVHIAG----------GPCI-------TI 164 (404)
Q Consensus 112 sLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga---~~~I~~----------G~gi-------~i 164 (404)
|+.+||.. +..+++||=+.|+- .+.|.| .+++||.|.|. +..|.. |..+ ..
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~GvY--~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGIY--REKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCceE--EEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 67777743 22345555555643 355555 68999999874 344541 1111 12
Q ss_pred eeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcc
Q 015569 165 QYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNN 243 (404)
Q Consensus 165 ~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn 243 (404)
..+++++.+||+|++..+... + ...+-|+.+. .+.++-+.+|.|.-..|=|++- ...--+.+|
T Consensus 151 v~a~~F~a~nitfeNt~~~~~----------g---~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C 214 (359)
T PLN02671 151 IESDYFCATGITFENTVVAEP----------G---GQGMQAVALRISGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQC 214 (359)
T ss_pred EECCceEEEeeEEEcCCCCCC----------C---CCCccEEEEEEcCccEEEEcceEeccccccEeC---CCcEEEEec
Confidence 367999999999998532110 0 0123344443 4788999999999988888752 223455666
Q ss_pred eecc
Q 015569 244 FMTH 247 (404)
Q Consensus 244 ~f~~ 247 (404)
++..
T Consensus 215 yIeG 218 (359)
T PLN02671 215 YIQG 218 (359)
T ss_pred EEEE
Confidence 6654
No 69
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=86.00 E-value=17 Score=38.56 Aligned_cols=53 Identities=9% Similarity=0.201 Sum_probs=36.4
Q ss_pred eeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCeee
Q 015569 165 QYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (404)
Q Consensus 165 ~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~DgliD 230 (404)
..+++++.+||+|++-.+.+. + ..++-|+-+. .+..+.+.+|.|--..|=|+.
T Consensus 203 v~ad~F~a~NLTf~Ntag~~~----------~---~~~~QAVALrv~GDra~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 203 SQNNGLQLQNLTIENTLGDSV----------D---AGNHPAVALRTDGDKVQIENVNILGRQDTFFV 256 (422)
T ss_pred EECCCEEEEeeEEEeCCCCCC----------C---CCcceeEEEEEcCCcEEEEeeEEecccceeee
Confidence 367999999999998542100 0 0123455554 578899999999888887775
No 70
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=85.53 E-value=5.9 Score=40.25 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=72.3
Q ss_pred CCCcEEEeCCeeEEEeeeeeeCCC-----CCeeeeecCCeeEEEEcceecccCeeeeecCCCCcc--CCCcceEEEEeee
Q 015569 202 DGDGVSIFGGTHIWVDHCSLSNCD-----DGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYT--QDKNMQVTIAFNH 274 (404)
Q Consensus 202 ~~DaIsi~gs~nVWIDHcS~s~~~-----DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~--~d~~~~vTi~~N~ 274 (404)
-+=++.|..+.||+|-..+|.... +-.|.+..++.+|=|-+|-|..|....=--|.|... ....--|||-+|+
T Consensus 115 ~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~ 194 (345)
T COG3866 115 VGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNK 194 (345)
T ss_pred EeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeee
Confidence 345788888999999999999866 445666678899999999998764431111223221 1123479999999
Q ss_pred eCCCCcC--------CCccccCCE--EEEEcCeeeCCcce--eeccCCCceeeeeccEEeCC
Q 015569 275 FGEGLVQ--------RIPRCRHGY--FHVVNNDYTHWEMY--AIGGSANPTINSQGNRFAAP 324 (404)
Q Consensus 275 f~~~~~~--------R~Pr~R~G~--~HvvNN~y~~w~~y--aigg~~~~~i~~egN~F~~~ 324 (404)
|.++-.. -.+- .|+ +-+-+|+|.|--.- .+. -..+-+-+|||+.-
T Consensus 195 fhdh~Kssl~G~sD~~~~~--~~~~kvT~hhNyFkn~~qR~PriR---fG~vHvyNNYy~~~ 251 (345)
T COG3866 195 FHDHDKSSLLGSSDSSNYD--DGKYKVTIHHNYFKNLYQRGPRIR---FGMVHVYNNYYEGN 251 (345)
T ss_pred eecCCeeeeeccCCccccc--CCceeEEEeccccccccccCCceE---eeEEEEeccccccC
Confidence 9643221 1111 232 45678888774211 111 12356678898833
No 71
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=78.38 E-value=26 Score=33.33 Aligned_cols=88 Identities=23% Similarity=0.240 Sum_probs=54.5
Q ss_pred eeEEEEcceecccC--eeeeecCCCCccCCCcceEEEEeeeeCCCCcCCCcccc--CCE-------EEEEcCeeeCCc--
Q 015569 236 TAITISNNFMTHHD--KVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCR--HGY-------FHVVNNDYTHWE-- 302 (404)
Q Consensus 236 ~~VTISnn~f~~H~--k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~Pr~R--~G~-------~HvvNN~y~~w~-- 302 (404)
++|.|=||.+.+-. -.-|+|...++..+....|.+|||.|.. ...+|... +|- .-+.||+|+.-.
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~--tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYD--TGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeec--CCcCCCCceeeeEEeccccccEEEeeeecccccc
Confidence 46778888887644 2346687666666666689999999953 34555544 342 258899997642
Q ss_pred ----ceeec----cCCCceeeeeccEEeCCC
Q 015569 303 ----MYAIG----GSANPTINSQGNRFAAPD 325 (404)
Q Consensus 303 ----~yaig----g~~~~~i~~egN~F~~~~ 325 (404)
||..+ .+.+-+..+.+|.+.+..
T Consensus 80 ai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 80 AIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred eEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 33333 112334566777776653
No 72
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=70.46 E-value=37 Score=32.84 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=38.2
Q ss_pred CccccCCCcEEEeCCe-eEEEeeeeeeCCCCCeeeeecCCeeEEEEcceecccCeee
Q 015569 197 WRTVSDGDGVSIFGGT-HIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVM 252 (404)
Q Consensus 197 ~~~~~~~DaIsi~gs~-nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~ 252 (404)
|+.....||+++.+.. .+.|.-.++..+.|..|-. .+.-.++|++-+..++.|..
T Consensus 90 wwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~-Ng~Gtv~I~nF~a~d~GKl~ 145 (215)
T PF03211_consen 90 WWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQH-NGGGTVTIKNFYAEDFGKLY 145 (215)
T ss_dssp EESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE--SSEEEEEEEEEEEEEEEEE
T ss_pred EecccceeeeEEcCCCceEEEeCCcccCCCccEEEe-cCceeEEEEeEEEcCCCEEE
Confidence 3334578888888877 8888888888888888863 35556888885555555544
No 73
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=65.53 E-value=9.2 Score=26.80 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=25.8
Q ss_pred cEEEeCCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcceecc
Q 015569 205 GVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTH 247 (404)
Q Consensus 205 aIsi~gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~ 247 (404)
||.+..+++..|..+.++...||.. ...+.+-+|..|.|.+
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~--~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIY--LTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEE--EEeCCCCEeECCEEEc
Confidence 4666666666677777777777544 3345666666666543
No 74
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=62.82 E-value=12 Score=34.22 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=26.2
Q ss_pred CCeeEEEeeeeeeCCCCCeeeeecCCeeEEEEcceecccC
Q 015569 210 GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHD 249 (404)
Q Consensus 210 gs~nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~H~ 249 (404)
+..++.|..|.+......-|.+..+++ ++|++|.|.+-.
T Consensus 183 ~~~~~~i~n~~~~~~~~~gi~i~~~~~-~~i~n~~i~~~~ 221 (225)
T PF12708_consen 183 GNNNITISNNTFEGNCGNGINIEGGSN-IIISNNTIENCD 221 (225)
T ss_dssp EEEEEEEECEEEESSSSESEEEEECSE-EEEEEEEEESSS
T ss_pred ecceEEEEeEEECCccceeEEEECCeE-EEEEeEEEECCc
Confidence 447888888888874444445444444 888888887643
No 75
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=55.54 E-value=74 Score=31.36 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=48.9
Q ss_pred eccCeeEeccCcce-EEeCCceEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEeC------Cee
Q 015569 141 MNSFKTIDGRGASV-HIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFG------GTH 213 (404)
Q Consensus 141 v~snkTI~G~ga~~-~I~~G~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~g------s~n 213 (404)
..++.+|.|.+-.- .+..|.+|.|..+ +..|+|-+|+++. .+||.+.+ ..+
T Consensus 95 ~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~~ 152 (246)
T PF07602_consen 95 LANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGING 152 (246)
T ss_pred ecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcccc
Confidence 35666666653211 1123567888655 8899999998752 24454433 234
Q ss_pred EEEeeeeeeCCCCCeeeee-cCCeeEEEEcceecccCe
Q 015569 214 IWVDHCSLSNCDDGLVDAI-HGSTAITISNNFMTHHDK 250 (404)
Q Consensus 214 VWIDHcS~s~~~DgliDv~-~gs~~VTISnn~f~~H~k 250 (404)
+.|.-+++....-|..-.. .....-+|.||+|.+-..
T Consensus 153 ~vI~GN~~~~~~~Gi~i~~~~~~~~n~I~NN~I~~N~~ 190 (246)
T PF07602_consen 153 NVISGNSIYFNKTGISISDNAAPVENKIENNIIENNNI 190 (246)
T ss_pred eEeecceEEecCcCeEEEcccCCccceeeccEEEeCCc
Confidence 5566666666555543211 111123778888886444
No 76
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=52.20 E-value=3.1e+02 Score=28.96 Aligned_cols=97 Identities=18% Similarity=0.224 Sum_probs=52.0
Q ss_pred EEEeeeceEEEEceEEeecccCCCcccccCCCCcCCcc---ccCCCcEEEeCCeeEEEeeeeeeCCCCCeeeeecCCeeE
Q 015569 162 ITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRT---VSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (404)
Q Consensus 162 i~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~---~~~~DaIsi~gs~nVWIDHcS~s~~~DgliDv~~gs~~V 238 (404)
+.+....+++||+-.|-+.... -++... ..-.|+ ..-.-||.-.+...+=|-||.|..|.=|.+. ....
T Consensus 139 ~~f~~~t~~~~hgC~F~gf~g~---cl~~~~-~~~VrGC~F~~C~~gi~~~~~~~lsVk~C~FekC~igi~s----~G~~ 210 (386)
T PF01696_consen 139 VVFHANTNTLFHGCSFFGFHGT---CLESWA-GGEVRGCTFYGCWKGIVSRGKSKLSVKKCVFEKCVIGIVS----EGPA 210 (386)
T ss_pred eEEEecceEEEEeeEEecCcce---eEEEcC-CcEEeeeEEEEEEEEeecCCcceEEeeheeeeheEEEEEe----cCCe
Confidence 4445678888888888764311 011000 000000 0011223333455667778888777666543 3467
Q ss_pred EEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeC
Q 015569 239 TISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (404)
Q Consensus 239 TISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~ 276 (404)
+|++|-|.+-.-..|++. .-++.||.|-
T Consensus 211 ~i~hn~~~ec~Cf~l~~g----------~g~i~~N~v~ 238 (386)
T PF01696_consen 211 RIRHNCASECGCFVLMKG----------TGSIKHNMVC 238 (386)
T ss_pred EEecceecccceEEEEcc----------cEEEeccEEe
Confidence 778888877665555543 3477778774
No 77
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=50.58 E-value=1.2e+02 Score=30.56 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=19.4
Q ss_pred eEEEEeeeeCCCCcCCCccccCCEEEEEcCeeeC
Q 015569 267 QVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTH 300 (404)
Q Consensus 267 ~vTi~~N~f~~~~~~R~Pr~R~G~~HvvNN~y~~ 300 (404)
++|+.++.. .+ -.|.|---.+.+.|.-+.+
T Consensus 195 NltliNC~I-~g---~QpLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 195 NLTLINCTI-EG---TQPLCYCDNLVLENCTMID 224 (277)
T ss_pred CeEEEEeEE-ec---cCccEeecceEEeCcEeec
Confidence 788998888 33 3466543445677777654
No 78
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=35.35 E-value=71 Score=32.66 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=31.3
Q ss_pred eeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEeCCeeEEEeeeeeeCCCCCee
Q 015569 166 YVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLV 229 (404)
Q Consensus 166 ~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~gs~nVWIDHcS~s~~~Dgli 229 (404)
+.+..||||++-+++.|. +.....-|.-.+.|+|..|..||...+-++.--||
T Consensus 266 ngkhfvirnvkaknitpd-----------fskkagidnatvaiygcdnfvidni~mvnsagmli 318 (464)
T PRK10123 266 NGKHFVIRNIKAKNITPD-----------FSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLI 318 (464)
T ss_pred CCcEEEEEeeeccccCCC-----------chhhcCCCcceEEEEcccceEEeccccccccccEE
Confidence 456667777776665442 11111124445667888888888887776654444
No 79
>PF07822 Toxin_13: Neurotoxin B-IV-like protein; InterPro: IPR012497 The members of this family resemble neurotoxin B-IV (P01525 from SWISSPROT), which is a crustacean-selective neurotoxin produced by the marine worm Cerebratulus lacteus. This highly cationic peptide is approximately 55 residues and is arranged to form two antiparallel helices connected by a well-defined loop in a hairpin structure. The branches of the hairpin are linked by four disulphide bonds. Three residues identified as being important for activity, namely Arg-17, -25 and -34, are found on the same face of the molecule, while another residue important for activity, Trp30, is on the opposite side. The protein's mode of action is not entirely understood, but it may act on voltage-gated sodium channels, possibly by binding to an as yet uncharacterised site on these proteins. Its site of interaction may also be less specific, for example it may interact with negatively charged membrane lipids []. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1VIB_A.
Probab=34.15 E-value=5.5 Score=29.59 Aligned_cols=19 Identities=42% Similarity=0.980 Sum_probs=13.2
Q ss_pred CcceeccCccccccccccc
Q 015569 58 IDDCWRCDPNWEKNRQRLA 76 (404)
Q Consensus 58 id~cwr~~~~w~~~r~~la 76 (404)
-|+|-||+-.|+-.|-+-|
T Consensus 20 yd~ci~cqgkwagkrgkca 38 (55)
T PF07822_consen 20 YDDCIRCQGKWAGKRGKCA 38 (55)
T ss_dssp HHHH--TTGGGTT-HHHHH
T ss_pred hhHHheecceeccccCcch
Confidence 6999999999998886544
No 80
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=34.07 E-value=30 Score=26.70 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=17.9
Q ss_pred HHHHHHhhhhhhcCCCCChhhHHHH
Q 015569 11 FLLFLMTPALILASAVPDPELVVHE 35 (404)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (404)
+++.+..|.|+.+-+.|||..|+-.
T Consensus 9 lilafa~pvfassmq~p~pasvttt 33 (65)
T PF10880_consen 9 LILAFASPVFASSMQMPDPASVTTT 33 (65)
T ss_pred HHHHHhhhHhhhcccCCCCcceeHH
Confidence 3355566777777789999998654
No 81
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=31.74 E-value=66 Score=32.20 Aligned_cols=15 Identities=7% Similarity=0.051 Sum_probs=9.7
Q ss_pred eeeceEEEEceEEee
Q 015569 165 QYVTNIIIHGLNIHD 179 (404)
Q Consensus 165 ~~a~NVIIrnL~i~~ 179 (404)
.+++|..|.|.+|.+
T Consensus 16 f~~~d~~l~~~~f~d 30 (277)
T PF12541_consen 16 FGSHDLRLENCTFAD 30 (277)
T ss_pred cccCCCEEEeeEEeC
Confidence 356667777777764
No 82
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=28.58 E-value=1.2e+02 Score=21.03 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=29.9
Q ss_pred eEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEeCCeeEEEeeeeeeCC
Q 015569 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC 224 (404)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~gs~nVWIDHcS~s~~ 224 (404)
||.+..+++..|++=+|.+ ..|||.+..+++.-|..+.++..
T Consensus 1 GI~l~~s~~~~i~~N~i~~----------------------~~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN----------------------NSYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred CEEEEecCCCEEECcEEeC----------------------CCCEEEEEeCCCCEeECCEEEcC
Confidence 3566666666676666653 34699999998888888887653
No 83
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=27.75 E-value=5.5e+02 Score=24.61 Aligned_cols=71 Identities=11% Similarity=0.089 Sum_probs=42.2
Q ss_pred CeeEEEeeeeeeCC-CCCeeee-----ecCCeeEEEEcceecccCeeeee--cCCCCccC-CCcceEEEEeeeeCCCCcC
Q 015569 211 GTHIWVDHCSLSNC-DDGLVDA-----IHGSTAITISNNFMTHHDKVMLL--GHSDTYTQ-DKNMQVTIAFNHFGEGLVQ 281 (404)
Q Consensus 211 s~nVWIDHcS~s~~-~DgliDv-----~~gs~~VTISnn~f~~H~k~~Li--G~sd~~~~-d~~~~vTi~~N~f~~~~~~ 281 (404)
+++|+|.|+.|..+ ....++. ..|-.+..|-||.|+.-..+.+. -....... ..+...++..|.+ .++.+
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII-~NT~~ 111 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNII-VNTRK 111 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceE-eeeee
Confidence 57999999999985 3333432 23445789999999853322222 11111222 2355667777777 46766
Q ss_pred C
Q 015569 282 R 282 (404)
Q Consensus 282 R 282 (404)
|
T Consensus 112 r 112 (198)
T PF08480_consen 112 R 112 (198)
T ss_pred c
Confidence 6
No 84
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=21.16 E-value=1e+02 Score=23.92 Aligned_cols=18 Identities=22% Similarity=0.617 Sum_probs=13.6
Q ss_pred CCcEEE-eCCeeEEEeeee
Q 015569 203 GDGVSI-FGGTHIWVDHCS 220 (404)
Q Consensus 203 ~DaIsi-~gs~nVWIDHcS 220 (404)
.+-|.+ +.+.-|||+|+.
T Consensus 13 p~~i~VtY~G~pV~Ie~vd 31 (59)
T PRK03174 13 PDMANVTYNGVPIYIQHVD 31 (59)
T ss_pred ccceEEEECCEEEEEEEEc
Confidence 345555 578999999996
No 85
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=20.10 E-value=2e+02 Score=31.25 Aligned_cols=47 Identities=13% Similarity=0.249 Sum_probs=31.5
Q ss_pred eeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEEe-CCeeEEEeeeeeeCCCCCee
Q 015569 166 YVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLV 229 (404)
Q Consensus 166 ~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi~-gs~nVWIDHcS~s~~~Dgli 229 (404)
.+++++.+||.|++-... .+.-|+-+. .+.++-+.+|.|.-..|=|.
T Consensus 268 ~~~~F~a~nitf~Ntag~-----------------~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy 315 (497)
T PLN02698 268 TGDGFIARDIGFKNAAGP-----------------KGEQAIALSITSDHSVLYRCSIAGYQDTLY 315 (497)
T ss_pred ECCCeEEEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEcceeecccchhe
Confidence 689999999999975210 122344443 47788888888887655554
Done!