BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015570
(404 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQ6|A Chain A, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1XQ6|B Chain B, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1YBM|A Chain A, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|1YBM|B Chain B, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|2Q46|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q46|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q4B|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
pdb|2Q4B|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
Length = 253
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 58 PYRIDFQATKNLVDAATIAKVNHFIMVSSLGTNKFGFPAAILNLFWGVLLWKRKAEEALI 117
P ++D+ KN +DAA +A V H ++V S+G P L +L+WKRKAE+ L
Sbjct: 105 PEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLG-NGNILVWKRKAEQYLA 163
Query: 118 ASGLPYTIVRPGGMERPTDAYKE---THNITLSQED--TLFGGQVSNLQVAELLACMAKN 172
SG PYTI+R GG+ +E + L Q D T+ V+ + + LL AKN
Sbjct: 164 DSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKN 223
Query: 173 RSLSYCKVVEVIAETTAPLTPMEELLAKIPSQ 204
++ E T+ P + L +++ S+
Sbjct: 224 KAFDLGSKPE---GTSTPTKDFKALFSQVTSR 252
>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BACILLUS
HALODURANS
Length = 236
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 84/207 (40%), Gaps = 27/207 (13%)
Query: 6 ELANKGIQPVEML---------------ELVECDLEKRVQIEPALGNASVVICCIGASEK 50
EL NKG +PV + ++V +LE+ A + V+ G+
Sbjct: 40 ELKNKGHEPVAXVRNEEQGPELRERGASDIVVANLEE--DFSHAFASIDAVVFAAGSGPH 97
Query: 51 EVFDITGPYRIDFQATKNLVDAATIAKVNHFIMVSSLGTNKFGFPAAILNLFWGVLLWKR 110
D T ID + A + FI VSS+GT P L+ KR
Sbjct: 98 TGADKT--ILIDLWGAIKTIQEAEKRGIKRFIXVSSVGTVD---PDQGPXNXRHYLVAKR 152
Query: 111 KAEEALIASGLPYTIVRPGGMERPTDAYKETHNITLSQEDTLFGGQVSNLQVAELLACMA 170
A++ L S L YTIVRPG P + T +T+S + ++ VA+++A +
Sbjct: 153 LADDELKRSSLDYTIVRPG----PLSNEESTGKVTVSPHFSEITRSITRHDVAKVIAELV 208
Query: 171 KNRSLSYCKVVEVIAETTAPLTPMEEL 197
++ + K EV+ T +E+L
Sbjct: 209 -DQQHTIGKTFEVLNGDTPIAKVVEQL 234
>pdb|2A35|A Chain A, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
pdb|2A35|B Chain B, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
Length = 215
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 36 GNASVVICCIGASEKEVFDITGPYRIDFQATKNLVDAATIAKVNHFIMVSSLGTNKFGFP 95
G+ CC+G + KE +DF + A H+++VS+LG +
Sbjct: 64 GSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGAD----- 118
Query: 96 AAILNLFWGVLLWKRKAEEALIASGLP-YTIVRPGGMERPTDAYK 139
A ++F+ + K + E+AL G P TI RP + P + ++
Sbjct: 119 -AKSSIFYNRV--KGELEQALQEQGWPQLTIARPSLLFGPREEFR 160
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family Protein
From Shigella Flexneri
Length = 236
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 110 RKAEEALIASGLPYTIVRPGGM 131
R+A +A+ ASGL YTI+RP +
Sbjct: 152 RRAADAIEASGLEYTILRPAWL 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,433,127
Number of Sequences: 62578
Number of extensions: 380139
Number of successful extensions: 634
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 6
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)