BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015570
(404 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H0U5|TIC62_ARATH Protein TIC 62, chloroplastic OS=Arabidopsis thaliana GN=TIC62 PE=1
SV=1
Length = 641
Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust.
Identities = 243/433 (56%), Positives = 291/433 (67%), Gaps = 42/433 (9%)
Query: 1 MKLDGELANKGIQPVEMLELVECDLEKRVQIEPALGNASVVICCIGASEKEVFDITGPYR 60
MKL ++G QPVE LE+VECDLEK+ I+PALGNASV+ICCIGASEKE+ DITGPYR
Sbjct: 128 MKLQN--TDEGTQPVEKLEIVECDLEKKDSIQPALGNASVIICCIGASEKEISDITGPYR 185
Query: 61 IDFQATKNLVDAATIAKVNHFIMVSSLGTNKFGFPAAILNLFWGVLLWKRKAEEALIASG 120
ID+ ATKNLVDAAT AKVN+FI+V+SLGTNKFGFPAAILNLFWGVL WKRKAEEALI SG
Sbjct: 186 IDYLATKNLVDAATSAKVNNFILVTSLGTNKFGFPAAILNLFWGVLCWKRKAEEALIESG 245
Query: 121 LPYTIVRPGGMERPTDAYKETHNITLSQEDTLFGGQVSNLQVAELLACMAKNRSLSYCKV 180
L Y IVRPGGMERPTDAYKETHN+TL+ +DTLFGGQVSNLQVAELLACMAKN LS+ K+
Sbjct: 246 LNYAIVRPGGMERPTDAYKETHNLTLALDDTLFGGQVSNLQVAELLACMAKNPQLSFSKI 305
Query: 181 VEVIAETTAPLTPMEELLAKIPSQRAE---PKESIAPEKSDPAASKSMISEESSAPITEE 237
VEV+AETTAPLTP+E+LL KIPS+R PK S+A ++ P +K + E ++ E
Sbjct: 306 VEVVAETTAPLTPIEKLLEKIPSKRPYVPPPKASVATKEVKPVPTKPVTQEPTAPKEDEA 365
Query: 238 PVQTKAKVTDPLSPYTSYEDLKPPTSPTPT-------APSGKKDSTIVDGLPM-SGISDA 289
P + K PLSPY SYEDLKPPTSP P A S + D+T V P+ + +
Sbjct: 366 PPKEKNVKPRPLSPYASYEDLKPPTSPIPNSTTSVSPAKSKEVDATQV---PVEANVVPV 422
Query: 290 QTSTSGVKTGITETVSAPEELSKARPLSPYFAYEDLKPPS---------------SPSPT 334
STS V + V E K RPLSPY YE+LKPPS SP PT
Sbjct: 423 PDSTSNVPVVEVKQV----EEKKERPLSPYARYENLKPPSSPSPTASSTRKSDSLSPGPT 478
Query: 335 PSGPKEVLSSSSTTGE--VASQLTGGNDVAKTPDTSLVEK-----NPIVNSIHHHSPYHM 387
S + + + T E VA+ +T + P+T++ P + + SPY +
Sbjct: 479 DSDTDKSSTVAKTVTETAVATSVTETSVATSVPETAVATSVTETAAPATSKMRPLSPYAI 538
Query: 388 YEDLKPPTSPIPS 400
Y DLKPPTSP P+
Sbjct: 539 YADLKPPTSPTPA 551
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 108/219 (49%), Gaps = 55/219 (25%)
Query: 230 SSAPITEEPVQTKAKVTDPLSPYTSYEDLKPPT---------------SPTPTAPSGKKD 274
S+ P+ E Q + K PLSPY YE+LKPP+ SP PT K
Sbjct: 427 SNVPVVEVK-QVEEKKERPLSPYARYENLKPPSSPSPTASSTRKSDSLSPGPTDSDTDKS 485
Query: 275 STIVDGLPMSGISDAQTSTS--------GVKTGITETVSAPEELSKARPLSPYFAYEDLK 326
ST+ + + ++ + T TS V T +TET +AP SK RPLSPY Y DLK
Sbjct: 486 STVAKTVTETAVATSVTETSVATSVPETAVATSVTET-AAPA-TSKMRPLSPYAIYADLK 543
Query: 327 PPSSPSPTPSGPKEVLSSSSTTGEVASQLTGG-NDVAKTPDTSLV-------EKNPIVNS 378
PP+SP+P +GPKE S E S+L GG NDV KT D +L E P+V+S
Sbjct: 544 PPTSPTPASTGPKEAASV-----EDNSELPGGNNDVLKTVDGNLNTIPPSTPEAVPVVSS 598
Query: 379 I----------------HHHSPYHMYEDLKPPTSPIPSP 401
SPY MY D+KPPTSP+PSP
Sbjct: 599 AIDTSLASGDNTAQPKPRPLSPYTMYADMKPPTSPLPSP 637
>sp|Q8SKU2|TIC62_PEA Protein TIC 62, chloroplastic OS=Pisum sativum GN=TIC62 PE=1 SV=2
Length = 534
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 251/418 (60%), Positives = 290/418 (69%), Gaps = 34/418 (8%)
Query: 1 MKLDGELANKGIQPVEMLELVECDLEKRVQIEPALGNASVVICCIGASEKEVFDITGPYR 60
+KLDG A+ G + VE LE+VECDLEK QI ALGNAS VIC IGASEKE+FDITGP R
Sbjct: 135 LKLDG--ASGGGEAVEKLEIVECDLEKADQIGSALGNASTVICAIGASEKEIFDITGPCR 192
Query: 61 IDFQATKNLVDAATIAKVNHFIMVSSLGTNKFGFPAAILNLFWGVLLWKRKAEEALIASG 120
ID++ATKNLVDAAT+AKVNHFI+V+SLGTNKFG PAAILNLFWGVL+WKRKAEEAL+ASG
Sbjct: 193 IDYRATKNLVDAATVAKVNHFILVTSLGTNKFGLPAAILNLFWGVLIWKRKAEEALLASG 252
Query: 121 LPYTIVRPGGMERPTDAYKETHNITLSQEDTLFGGQVSNLQVAELLACMAKNRSLSYCKV 180
+PYTIVRPGGMERPTDAYKETHN+TLS EDTLFGGQVSNLQVAEL+A MAKN LSYCK+
Sbjct: 253 IPYTIVRPGGMERPTDAYKETHNVTLSTEDTLFGGQVSNLQVAELMAIMAKNPDLSYCKI 312
Query: 181 VEVIAETTAPLTPMEELLAKIPSQRAEPKESIAPEKSDPAA------SKSMISEE-SSAP 233
VEVIAETTAPLTP E+LL +IPSQR +K+D A S ++++E S AP
Sbjct: 313 VEVIAETTAPLTPAEKLLTRIPSQRPYIPSPKKVQKADTATVSNTGPSANVVAEVPSIAP 372
Query: 234 ITEEPVQTKAKVTDPLSPYTSYEDLKPPTSPTPTAPSGKKDSTIVDGLPMSGISDAQTST 293
E + AK PLSPYT+Y+DLKPP+SP+PT PS KK I D +P SD +S
Sbjct: 373 QKETASKPVAKTEQPLSPYTAYDDLKPPSSPSPTKPSEKKQINISDAVPTPISSDTPSSI 432
Query: 294 SGVKTGITETVSAPEELSKAR-PLSPYFAYEDLKPPSSPSPTPSGPKEVLSSSSTTGEVA 352
+ GI++T S+ SK + LSPY AY DLK SP+PS P LS T V
Sbjct: 433 QEID-GISQTTSS----SKGKESLSPYAAYPDLK--PPSSPSPSVPTTSLSKRDTV--VV 483
Query: 353 SQLTGGNDVAKTPDTSLVEKNPIVNSIHHH-------SPYHMYEDLKPPTSPIPSPKK 403
S + P VE P H H SPY MYEDLKPP SP PS +K
Sbjct: 484 S--------SNGPAQLSVEDTPKNEEQHLHEPKSRPLSPYAMYEDLKPPASPSPSFRK 533
>sp|Q8H124|Y2446_ARATH Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis
thaliana GN=At2g34460 PE=1 SV=1
Length = 280
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 105/197 (53%), Gaps = 19/197 (9%)
Query: 18 LELVECDL-EKRVQIEPALGNAS-VVICCIGASEKEVFDITGPYRIDFQATKNLVDAATI 75
L++V D+ E ++ +G+ S VIC G + FDI P+++D T NLVDA
Sbjct: 93 LQIVRADVTEGPDKLAEVIGDDSQAVICATGF--RPGFDIFTPWKVDNFGTVNLVDACRK 150
Query: 76 AKVNHFIMVSSLGTNKFGF-----PAAI-LNLFWGVLLWKRKAEEALIASGLPYTIVRPG 129
V F++VSS+ N PA + LNLF L+ K +AE+ + SG+ YTIVRPG
Sbjct: 151 QGVEKFVLVSSILVNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPG 210
Query: 130 GMER--PTDAYKETHNITLSQEDTLFGGQVSNLQVAELLACMAKNRSLSYCKVVEVIAET 187
G++ P T N+ + EDTL+ G +S VAE +A A + S KVVE++A
Sbjct: 211 GLKNDPP------TGNVVMEPEDTLYEGSISRDLVAE-VAVEALLQEESSFKVVEIVARA 263
Query: 188 TAPLTPMEELLAKIPSQ 204
AP ++L A + Q
Sbjct: 264 EAPKRSYKDLFASVKGQ 280
>sp|Q94EG6|Y5224_ARATH Uncharacterized protein At5g02240 OS=Arabidopsis thaliana
GN=At5g02240 PE=1 SV=1
Length = 253
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 21/158 (13%)
Query: 58 PYRIDFQATKNLVDAATIAKVNHFIMVSSLG-TNKFGFPAAILNLFWG--VLLWKRKAEE 114
P ++D+ KN +DAA +A V H ++V S+G TN P LN +L+WKRKAE+
Sbjct: 105 PEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTN----PDHPLNKLGNGNILVWKRKAEQ 160
Query: 115 ALIASGLPYTIVRPGGMERPTDAYKETHNITLSQEDTLFG--------GQVSNLQVAELL 166
L SG PYTI+R GG+ +E + + ++D L V+ + + LL
Sbjct: 161 YLADSGTPYTIIRAGGLLDKEGGVRE---LLVGKDDELLQTDTKTVPRADVAEVCIQALL 217
Query: 167 ACMAKNRSLSYCKVVEVIAETTAPLTPMEELLAKIPSQ 204
AKN++ E T+ P + L +++ S+
Sbjct: 218 FEEAKNKAFDLGSKPE---GTSTPTKDFKALFSQVTSR 252
>sp|O80934|Y2766_ARATH Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis
thaliana GN=At2g37660 PE=1 SV=2
Length = 325
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 8/106 (7%)
Query: 51 EVFDITGPY--RIDFQATKNLVDAATIAKVNHFIMVSSLGTNKFGFPA-AILNLFWGVLL 107
E F G Y ++D+ KN +DAA A V ++V S+G P +I N +L+
Sbjct: 168 EFFFDDGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNINHPLNSIGNA--NILV 225
Query: 108 WKRKAEEALIASGLPYTIVRPGGMERPTDAYKETHNITLSQEDTLF 153
WKRKAE+ L SG+PYTI+R GG++ +E + + ++D L
Sbjct: 226 WKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRE---LLVGKDDELL 268
>sp|P48279|YCF39_CYAPA Uncharacterized protein ycf39 OS=Cyanophora paradoxa GN=ycf39 PE=3
SV=1
Length = 321
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 19 ELVECDLEKRVQIEPALGNASVVICCIGASEKEVFDITGPYRIDFQATKNLVDAATIAKV 78
+L+ DL + + PAL V+I S D G Y++D + K L+DAA K+
Sbjct: 46 KLIWGDLSQPESLLPALTGIRVII---DTSTSRPTDPAGVYQVDLKGKKALIDAAKAMKI 102
Query: 79 NHFIMVSSLGTNKFGFPAAILNLFWGVLLWKRKAEEALIASGLPYTIVRPGGM 131
FI S L + K+ ++ + K EE L SGL YTI + G
Sbjct: 103 EKFIFFSILNSEKYS-QVPLMRI-------KTVTEELLKESGLNYTIFKLCGF 147
>sp|Q1E2F1|MDM12_COCIM Mitochondrial distribution and morphology protein 12
OS=Coccidioides immitis (strain RS) GN=MDM12 PE=3 SV=1
Length = 446
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 38/136 (27%)
Query: 205 RAEPKESIAPEKSDPAASKSMISEESSAPITEEPVQTKAKVTDPLSPYTSYEDLKPPTSP 264
R EP + P K DP AS+ P+++ DPL+PY P +
Sbjct: 123 RIEPHDVPIPSKEDPLASR--------------PIRSPMSFGDPLNPYFF------PRAG 162
Query: 265 TPTAPSGKKDSTIVDGLPMSGISDAQTSTSGVKTGITETVSAPEELSKARPLSPYFAYED 324
TP P G + +P+ GIS QT S V G P SP
Sbjct: 163 TPGIPGGTSNLGYY-YMPLGGISGTQTPLSSVPRG---------------PFSPGLRDAS 206
Query: 325 L--KPPSSPSPTPSGP 338
+ +P +S P PSGP
Sbjct: 207 VFGEPSNSQRPNPSGP 222
>sp|O07609|YHFK_BACSU Uncharacterized sugar epimerase YhfK OS=Bacillus subtilis (strain
168) GN=yhfK PE=2 SV=1
Length = 214
Score = 35.8 bits (81), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 80 HFIMVSSL-GTNKFGFPAAILNLFWGVLLWKRKAEEALIASGLPYTIVRPGGME 132
FIMVS+L N+ + A+ + + K A++ L ASGL YTI+RPGG+
Sbjct: 107 RFIMVSALQAHNRENWNEALKPYY----VAKHYADKILEASGLTYTIIRPGGLR 156
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.128 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,277,595
Number of Sequences: 539616
Number of extensions: 6861057
Number of successful extensions: 26349
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 852
Number of HSP's that attempted gapping in prelim test: 23569
Number of HSP's gapped (non-prelim): 2658
length of query: 404
length of database: 191,569,459
effective HSP length: 120
effective length of query: 284
effective length of database: 126,815,539
effective search space: 36015613076
effective search space used: 36015613076
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)