BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015573
(404 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HHL|A Chain A, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|B Chain B, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|C Chain C, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|D Chain D, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
Length = 195
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/132 (51%), Positives = 96/132 (72%), Gaps = 1/132 (0%)
Query: 224 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQL 283
HS+ +P +ADF PV + H VYV RP++ +FL+R+ LFE ++FTAS + YA+ +
Sbjct: 41 HSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPV 100
Query: 284 LNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIP 343
++LD + +FR R+FRESCVF GNY+KDLS LGR+LS VIIVDNSP ++ F +N +P
Sbjct: 101 ADLLD-RWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVP 159
Query: 344 IESWFDDRSDQE 355
++SWFDD +D E
Sbjct: 160 VQSWFDDMTDTE 171
>pdb|1TA0|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein With Associated Ligand
Length = 197
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 101/155 (65%), Gaps = 1/155 (0%)
Query: 224 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQL 283
HS+ +P ++ADF PV + H VYV RP++ +FL+R+ LFE ++FTAS + YA+ +
Sbjct: 28 HSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPV 87
Query: 284 LNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIP 343
++LD K FR R+FRESCVF GNY+KDLS LGRDL V+I+DNSP ++ F DN +P
Sbjct: 88 ADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVP 146
Query: 344 IESWFDDRSDQEXXXXXXXXXXXVGVEDVRPLIVQ 378
+ SWFD+ SD E V+DV ++ Q
Sbjct: 147 VASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQ 181
>pdb|3L0Y|A Chain A, Crystal Structure Of Scp1 Phosphatase D98a Mutant
pdb|3L0Y|B Chain B, Crystal Structure Of Scp1 Phosphatase D98a Mutant
Length = 184
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 101/155 (65%), Gaps = 1/155 (0%)
Query: 224 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQL 283
HS+ +P ++ADF PV + H VYV RP++ +FL+R+ LFE ++FTAS + YA+ +
Sbjct: 31 HSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPV 90
Query: 284 LNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIP 343
++LD K FR R+FRESCVF GNY+KDLS LGRDL V+I+DNSP ++ F DN +P
Sbjct: 91 ADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVP 149
Query: 344 IESWFDDRSDQEXXXXXXXXXXXVGVEDVRPLIVQ 378
+ SWFD+ SD E V+DV ++ Q
Sbjct: 150 VASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQ 184
>pdb|2GHQ|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHQ|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
Length = 181
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 101/155 (65%), Gaps = 1/155 (0%)
Query: 224 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQL 283
HS+ +P ++ADF PV + H VYV RP++ +FL+R+ LFE ++FTAS + YA+ +
Sbjct: 28 HSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPV 87
Query: 284 LNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIP 343
++LD K FR R+FRESCVF GNY+KDLS LGRDL V+I+DNSP ++ F DN +P
Sbjct: 88 ADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVP 146
Query: 344 IESWFDDRSDQEXXXXXXXXXXXVGVEDVRPLIVQ 378
+ SWFD+ SD E V+DV ++ Q
Sbjct: 147 VASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQ 181
>pdb|3PGL|A Chain A, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
pdb|3PGL|B Chain B, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
Length = 180
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 101/155 (65%), Gaps = 1/155 (0%)
Query: 224 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQL 283
HS+ +P ++ADF PV + H VYV RP++ +FL+R+ LFE ++FTAS + YA+ +
Sbjct: 27 HSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPV 86
Query: 284 LNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIP 343
++LD K FR R+FRESCVF GNY+KDLS LGRDL V+I+DNSP ++ F DN +P
Sbjct: 87 ADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVP 145
Query: 344 IESWFDDRSDQEXXXXXXXXXXXVGVEDVRPLIVQ 378
+ SWFD+ SD E V+DV ++ Q
Sbjct: 146 VASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQ 180
>pdb|2Q5E|A Chain A, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|B Chain B, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|C Chain C, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|D Chain D, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|E Chain E, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|F Chain F, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|G Chain G, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|H Chain H, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
Length = 187
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 96/149 (64%), Gaps = 1/149 (0%)
Query: 224 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQL 283
HS+ +P ++ADF P+ H VYV RPY+ +FL R+ LFE ++FTAS + YA+ +
Sbjct: 30 HSSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPV 89
Query: 284 LNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIP 343
++LD + +FR R+FRESCVF G Y+KDLS LGRDL +I+DNSP ++ F +N +P
Sbjct: 90 TDLLD-RCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVP 148
Query: 344 IESWFDDRSDQEXXXXXXXXXXXVGVEDV 372
++SWFDD +D E G EDV
Sbjct: 149 VQSWFDDMADTELLNLIPIFEELSGAEDV 177
>pdb|1T9Z|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein
Length = 197
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Query: 224 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQL 283
HS+ +P ++ADF PV + H VYV RP++ +FL+R LFE ++FTAS + YA+ +
Sbjct: 28 HSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRXGELFECVLFTASLAKYADPV 87
Query: 284 LNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIP 343
+ LD K FR R+FRESCVF GNY+KDLS LGRDL V+I DNSP ++ F DN +P
Sbjct: 88 ADXLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLIXDNSPASYVFHPDNAVP 146
Query: 344 IESWFDDRSDQEXXXXXXXXXXXVGVEDVRPLIVQ 378
+ SWFD+ SD E V+DV ++ Q
Sbjct: 147 VASWFDNXSDTELHDLLPFFEQLSRVDDVYSVLRQ 181
>pdb|3L0B|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
pdb|3L0B|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
Length = 184
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 100/155 (64%), Gaps = 1/155 (0%)
Query: 224 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQL 283
HS+ +P ++ADF PV + H VYV RP++ +FL+R+ LFE ++FTAS + YA+ +
Sbjct: 31 HSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPV 90
Query: 284 LNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIP 343
++LD K FR R+FRESCVF GNY+KDLS LGRDL V+I+ NSP ++ F DN +P
Sbjct: 91 ADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILANSPASYVFHPDNAVP 149
Query: 344 IESWFDDRSDQEXXXXXXXXXXXVGVEDVRPLIVQ 378
+ SWFD+ SD E V+DV ++ Q
Sbjct: 150 VASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQ 184
>pdb|3L0C|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
pdb|3L0C|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
Length = 184
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 100/155 (64%), Gaps = 1/155 (0%)
Query: 224 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQL 283
HS+ +P ++ADF PV + H VYV RP++ +FL+R+ LFE ++FTAS + YA+ +
Sbjct: 31 HSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPV 90
Query: 284 LNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIP 343
++LD K FR R+FRESCVF GNY+KDLS LGRDL V+I+ NSP ++ F DN +P
Sbjct: 91 ADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILANSPASYVFHPDNAVP 149
Query: 344 IESWFDDRSDQEXXXXXXXXXXXVGVEDVRPLIVQ 378
+ SWFD+ SD E V+DV ++ Q
Sbjct: 150 VASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQ 184
>pdb|3QLE|A Chain A, Structural Basis For The Function Of Tim50 In The
Mitochondrial Presequence Translocase
Length = 204
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 67/111 (60%)
Query: 244 QKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESC 303
QKH RP FL +S +EI++F+++ +Y++++ LDP + +F+E C
Sbjct: 52 QKHGWRTAKRPGADYFLGYLSQYYEIVLFSSNYMMYSDKIAEKLDPIHAFVSYNLFKEHC 111
Query: 304 VFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQ 354
V+ DG ++KDLS L RDLS VII+D P ++ Q +N IP+E W + D+
Sbjct: 112 VYKDGVHIKDLSKLNRDLSKVIIIDTDPNSYKLQPENAIPMEPWNGEADDK 162
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 442
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 20/131 (15%)
Query: 224 HSTLEPC------DDADFTFPV-----NFNLQK------HTVYVRCRPYLKDFLERVSSL 266
H+T++P D + + V +FNLQ+ Y++ RP L FL+++S L
Sbjct: 39 HATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKISEL 98
Query: 267 FEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVF-RESCVFVDGNYLKDLSVLGRDLSHVI 325
+E+ I+T YA+++ ++DP KLF+ RV R+ + L+ L D S V+
Sbjct: 99 YELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQKSLRRL--FPCDTSMVV 156
Query: 326 IVDNSPQAFGF 336
++D+ + +
Sbjct: 157 VIDDRGDVWDW 167
>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 372
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 224 HSTLEPCDDADFTFPVN-----------FNLQK------HTVYVRCRPYLKDFLERVSSL 266
H+T++P + P N FNLQ+ Y++ RP L FL+++S L
Sbjct: 31 HATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKISEL 90
Query: 267 FEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVF 299
+E+ I+T YA+++ ++DP KLF+ RV
Sbjct: 91 YELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVL 123
>pdb|2IM9|A Chain A, Crystal Structure Of Protein Lpg0564 From Legionella
Pneumophila Str. Philadelphia 1, Pfam Duf1460
Length = 333
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 64 VAAINLNTRYGLGNEPSGACLEYDSFKKASMDHKDCDEETAPVL 107
++A T+Y LG+ G YD F + +D DCD VL
Sbjct: 60 ISAYFKGTKYILGSLGEGPNARYDQFPRYRVDGFDCDTYVNTVL 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,459,162
Number of Sequences: 62578
Number of extensions: 375852
Number of successful extensions: 842
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 14
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)