BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015574
(404 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4I1S7|ELP2_ARATH Elongator complex protein 2 OS=Arabidopsis thaliana GN=ELP2 PE=1
SV=1
Length = 838
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 22/108 (20%)
Query: 123 GFSGVGTKSNELSILAFEVANTIVKGSNLMLSISESSVRQLKEV----------VLPAEG 172
GF G N LSILA N+ S ES Q+++V V A
Sbjct: 366 GFYGGHWSPNSLSILAHGYGGAFHLWRNVS-SSKESENWQMQKVPSGHFAAVTDVTWART 424
Query: 173 VQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSKDPQWHNLGR 220
+ L+S D+ ++F+A K D+ GN ++D WH L R
Sbjct: 425 GEYLLSVSQDQTTRVFSAWKNDE-----------GNEAEDEHWHELAR 461
>sp|Q99P99|HDAC4_RAT Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2
Length = 1077
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 220 RYFEKISRELIPQ--KQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDC----QHK 273
R E++SR+ Q + +KQ+ E+L ++H EL + L+R Q+ QH+
Sbjct: 94 RQHEQLSRQHEAQLHEHIKQQQEMLA------MKHQQELLEHQRKLERHRQEQELEKQHR 147
Query: 274 RQEEDNPVGSQKGESFAILRAELKSQRKQVKILRKKSLWSRSLEEVM 320
Q+ +KG+ A+ E+K + ++ + +KK+L R+L M
Sbjct: 148 EQKLQQLKNKEKGKESAVASTEVKMKLQEFVLNKKKALAHRNLNHCM 194
>sp|B3EH06|PNP_CHLL2 Polyribonucleotide nucleotidyltransferase OS=Chlorobium limicola
(strain DSM 245 / NBRC 103803) GN=pnp PE=3 SV=1
Length = 736
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 66 DGGLSQKSKSVRSTQAAVAKVSEVSARLGRAGTVGLGKAVDVLDTLGSSMTNLNPNNGF 124
DG ++ SV T AA+A + + A+ GT+ LGK DV D LG+ + L +G
Sbjct: 612 DGTVTIACSSVEGTHAALATIKTLLAK-PEVGTIYLGKVRDVRDELGAFVEFLPKTDGL 669
>sp|Q0AEJ6|ATPB2_NITEC ATP synthase subunit beta 2 OS=Nitrosomonas eutropha (strain C91)
GN=atpD2 PE=3 SV=1
Length = 485
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 88 EVSARLGRAGTVGLGKAVDVLDTLGSSMTNLNPNNGFSGVGTKSNELSILAFEVANTIVK 147
E + G G G+GK V + + + ++ + + F G+G +S E L E+ V+
Sbjct: 168 ERGGKTGLFGGAGVGKTVLITELINNTAQHHKGVSLFCGIGERSREAEELYREMGEAGVR 227
Query: 148 GSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRF 206
+ML Q+ E A GV+ LV K + + F D D+ + V RF
Sbjct: 228 DKTVML------FGQMSE----APGVRFLVGKTALTMAEYFRDDLGQDVLLLIDNVFRF 276
>sp|Q99MY0|SPZ1_MOUSE Spermatogenic leucine zipper protein 1 OS=Mus musculus GN=Spz1 PE=1
SV=1
Length = 378
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 27/147 (18%)
Query: 133 ELSILAFEVANTIVKGSNLMLSIS-ESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAAD 191
EL++ E N I +L + E +K+++L + +N+V K FA D
Sbjct: 107 ELNVRGVEKKNKIRFKDDLFIHFDPEREQNTMKQMLLKNQSAKNMVPK--------FARD 158
Query: 192 --KRDDLKIFTGEVVRFGNRSKDPQWHNLGRYFEKISRELIPQKQLKQEAELLMEQLMTL 249
++ + F G ++ R ++ H G Y ++L+ MEQL+
Sbjct: 159 LCNAEETRGFDGMLLSV-KRPRNGSLHLRGEY-----------RKLRNN----MEQLLQE 202
Query: 250 VQHTAELYNELQILDRFEQDCQHKRQE 276
H ++ +NEL L R Q+CQ++ QE
Sbjct: 203 ADHWSKQHNELSELMRSYQECQNETQE 229
>sp|O84698|Y962_CHLTR Putative phosphate permease CT_962 OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=CT_692 PE=3 SV=1
Length = 426
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 107 VLDTLGSSMTNLNPNNGFSGVGTKS----NELSILAFEVANT-IVKGSNLMLSISES--- 158
V+DT+G +T L P+ GFS VG S S L F ++ T +V GS L + +
Sbjct: 332 VIDTIGKKITELTPSRGFS-VGMSSAITIAAASSLGFPISTTHVVVGSVLGIGFARGLRA 390
Query: 159 -SVRQLKEVVL 168
++R +K++VL
Sbjct: 391 INLRIIKDIVL 401
>sp|Q6NZM9|HDAC4_MOUSE Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1
Length = 1076
Score = 32.0 bits (71), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 220 RYFEKISRELIPQ--KQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDC----QHK 273
R E++SR+ Q + +KQ+ E+L ++H EL + L+R Q+ QH+
Sbjct: 94 RQHEQLSRQHEAQLHEHIKQQQEMLA------MKHQQELLEHQRKLERHRQEQELEKQHR 147
Query: 274 RQEEDNPVGSQKGESFAILRAELKSQRKQVKILRKKSLWSRSLEEVM 320
Q+ +KG+ A+ E+K + ++ + +KK+L R+L +
Sbjct: 148 EQKLQQLKNKEKGKESAVASTEVKMKLQEFVLNKKKALAHRNLNHCI 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,375,208
Number of Sequences: 539616
Number of extensions: 5738536
Number of successful extensions: 20775
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 20704
Number of HSP's gapped (non-prelim): 214
length of query: 404
length of database: 191,569,459
effective HSP length: 120
effective length of query: 284
effective length of database: 126,815,539
effective search space: 36015613076
effective search space used: 36015613076
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)