Query 015574
Match_columns 404
No_of_seqs 119 out of 140
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 07:35:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11961 DUF3475: Domain of un 99.9 6.5E-29 1.4E-33 191.4 4.1 57 136-192 1-57 (57)
2 PF05003 DUF668: Protein of un 99.3 1.1E-12 2.5E-17 109.6 2.4 30 356-385 1-30 (89)
3 TIGR02865 spore_II_E stage II 62.5 47 0.001 37.5 9.8 173 94-272 190-402 (764)
4 PRK04778 septation ring format 50.0 99 0.0022 33.5 9.4 40 237-276 201-245 (569)
5 PF06160 EzrA: Septation ring 48.7 99 0.0021 33.6 9.2 93 214-306 169-271 (560)
6 KOG4403 Cell surface glycoprot 42.1 52 0.0011 35.7 5.7 84 173-256 167-261 (575)
7 PF01418 HTH_6: Helix-turn-hel 41.2 25 0.00055 28.0 2.6 66 143-219 2-67 (77)
8 PF13094 CENP-Q: CENP-Q, a CEN 40.9 81 0.0018 28.3 6.1 51 254-309 34-84 (160)
9 PF09325 Vps5: Vps5 C terminal 40.5 3E+02 0.0065 25.4 11.9 120 187-308 52-184 (236)
10 KOG3498 Preprotein translocase 35.9 23 0.0005 29.0 1.6 31 191-221 6-36 (67)
11 PF11598 COMP: Cartilage oligo 35.4 46 0.001 25.3 3.0 20 289-308 17-36 (45)
12 PF04799 Fzo_mitofusin: fzo-li 33.0 1.5E+02 0.0032 28.3 6.7 23 207-229 96-118 (171)
13 TIGR01834 PHA_synth_III_E poly 29.7 3.8E+02 0.0082 27.9 9.4 28 281-309 284-311 (320)
14 cd07664 BAR_SNX2 The Bin/Amphi 29.1 5.6E+02 0.012 25.1 12.1 118 189-308 52-180 (234)
15 PF04156 IncA: IncA protein; 29.1 4.4E+02 0.0095 23.9 10.0 25 237-261 126-150 (191)
16 PF04859 DUF641: Plant protein 28.8 2.3E+02 0.0051 25.8 6.9 27 250-276 44-70 (131)
17 TIGR01069 mutS2 MutS2 family p 27.1 5.3E+02 0.012 29.5 10.8 24 302-325 584-607 (771)
18 cd07665 BAR_SNX1 The Bin/Amphi 26.5 6.3E+02 0.014 24.9 12.1 127 189-323 52-189 (234)
19 KOG0994 Extracellular matrix g 26.4 3.9E+02 0.0085 32.9 9.7 72 237-308 1204-1288(1758)
20 PF10267 Tmemb_cc2: Predicted 26.4 8.2E+02 0.018 26.1 13.6 89 240-341 257-360 (395)
21 PF08702 Fib_alpha: Fibrinogen 26.0 1.8E+02 0.0039 26.6 5.8 22 288-309 105-126 (146)
22 PF12777 MT: Microtubule-bindi 25.9 6.1E+02 0.013 25.8 10.1 54 289-342 272-328 (344)
23 PF10186 Atg14: UV radiation r 25.7 5.8E+02 0.013 24.2 14.6 29 312-340 131-159 (302)
24 KOG2991 Splicing regulator [RN 25.6 2.6E+02 0.0057 28.8 7.3 23 287-309 278-300 (330)
25 PRK15362 pathogenicity island 25.4 5.2E+02 0.011 28.4 9.7 75 247-339 101-175 (473)
26 PF06005 DUF904: Protein of un 24.6 2.1E+02 0.0046 23.4 5.4 16 308-323 54-69 (72)
27 PF05527 DUF758: Domain of unk 24.5 4.9E+02 0.011 25.1 8.6 25 234-258 51-75 (186)
28 KOG4552 Vitamin-D-receptor int 24.0 5.9E+02 0.013 25.6 9.2 72 240-322 56-134 (272)
29 PF05983 Med7: MED7 protein; 21.9 5.7E+02 0.012 23.6 8.3 34 168-204 52-85 (162)
30 PF04111 APG6: Autophagy prote 21.8 4.9E+02 0.011 26.5 8.5 30 288-317 114-143 (314)
31 COG2443 Sss1 Preprotein transl 21.1 57 0.0012 26.6 1.4 30 190-219 5-34 (65)
32 PF06120 Phage_HK97_TLTM: Tail 20.4 5.2E+02 0.011 26.6 8.4 68 230-307 34-101 (301)
33 PF05529 Bap31: B-cell recepto 20.4 3.1E+02 0.0068 25.2 6.3 24 287-310 161-184 (192)
No 1
>PF11961 DUF3475: Domain of unknown function (DUF3475); InterPro: IPR021864 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 60 amino acids in length. This domain is found associated with PF05003 from PFAM.
Probab=99.95 E-value=6.5e-29 Score=191.42 Aligned_cols=57 Identities=51% Similarity=0.656 Sum_probs=56.3
Q ss_pred eehHHHHHHHHHHHHhhhcCChHHHHHhhhhccCcccchhccccChHHHHHHHHHHH
Q 015574 136 ILAFEVANTIVKGSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADK 192 (404)
Q Consensus 136 ILAFEVAntMSKl~~L~~SLSd~eI~rLR~evL~SeGV~~LVS~D~~~LL~LA~AEk 192 (404)
||||||||||||++||||||||++|.+||+|+++|||||+|||+||+|||+||||||
T Consensus 1 ILAFEVAn~msk~~~L~~SLsd~~i~~Lr~evl~seGV~~LVS~D~~~LL~La~aE~ 57 (57)
T PF11961_consen 1 ILAFEVANTMSKLVNLWQSLSDEEIARLREEVLRSEGVRKLVSDDDSFLLRLACAEK 57 (57)
T ss_pred CccHHHHHHHHHHHHHHHHcChHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999999996
No 2
>PF05003 DUF668: Protein of unknown function (DUF668); InterPro: IPR007700 This is a family of uncharacterised plant proteins of unknown function.
Probab=99.29 E-value=1.1e-12 Score=109.56 Aligned_cols=30 Identities=57% Similarity=0.717 Sum_probs=29.1
Q ss_pred CccchhhhhhHHHHHHHHHHHHhhcchhhh
Q 015574 356 RLGPAGLALHYANIILQIDSLVSLLILFIV 385 (404)
Q Consensus 356 tLG~AgLALHYANiI~qIe~lvsrp~~v~~ 385 (404)
|||+|||||||||||+|||+|+++|++||.
T Consensus 1 tLG~AgLALhYANvI~~ie~l~~~p~~v~~ 30 (89)
T PF05003_consen 1 TLGGAGLALHYANVIIQIEKLVSRPSSVPP 30 (89)
T ss_pred CcchHHHHHHHHHHHHHHHHHHcCcccCCc
Confidence 899999999999999999999999999985
No 3
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=62.52 E-value=47 Score=37.51 Aligned_cols=173 Identities=14% Similarity=0.216 Sum_probs=91.5
Q ss_pred ccccccCcchhhHHhhhhcccccCCCCC--------CCC-cccccCCCcee-eehHHHHHHHHHHHH-----hhhcCChH
Q 015574 94 GRAGTVGLGKAVDVLDTLGSSMTNLNPN--------NGF-SGVGTKSNELS-ILAFEVANTIVKGSN-----LMLSISES 158 (404)
Q Consensus 94 g~a~~~gl~kav~vldtlgss~~~l~~~--------~gf-sg~~~k~~kIG-ILAFEVAntMSKl~~-----L~~SLSd~ 158 (404)
+.+|-+|+|.|+.|.--+..|+++.+.- +|+ +|.-.+.+|+| +++|=+++++..+.. +...|-|-
T Consensus 190 a~~gG~~~Gaa~Gv~~Gli~~l~~~~~~~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~~il~~y~~~~~~~~~~~~e~ 269 (764)
T TIGR02865 190 SYIGGSGAGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKELGKIGTGIGYLVGFLILAFYTQGSVAFSLALYEA 269 (764)
T ss_pred HHhcCchHhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCcceeeHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 4457788999999999999999885432 266 78877777865 689999998875542 11111111
Q ss_pred HH-------------HHhhhhccCcccchhccccChHHH--HHHHHHHHHHHHhHHHHhHhh-hhccCCCc----cccch
Q 015574 159 SV-------------RQLKEVVLPAEGVQNLVSKDMDEL--LKIFAADKRDDLKIFTGEVVR-FGNRSKDP----QWHNL 218 (404)
Q Consensus 159 eI-------------~rLR~evL~SeGV~~LVS~D~~~L--L~LA~AEk~eeL~~~A~sVaR-LG~rC~DP----~lh~f 218 (404)
=| .++...+ + |-++-....+.+. ++=..+++++++..+=.++++ |++.+.++ .=+..
T Consensus 270 ~ia~~lFll~P~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~rl~~~a~~~~~Ls~tf~~~~~~~~~~~~~~~~ 346 (764)
T TIGR02865 270 LIATLLFLLIPNKIYKKLERYL-D--GERKQPDLQEDYMRKVREIAAEKLEEFSEVFRELSNTFVEALASNEKLTMKRKS 346 (764)
T ss_pred HHHHHHHHHhhHHHHHHHHhhC-C--CchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhH
Confidence 11 1222221 1 2222111122222 233344555544443333333 32344332 12467
Q ss_pred hHHHHHHhhcc-----cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015574 219 GRYFEKISREL-----IPQKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDCQH 272 (404)
Q Consensus 219 dr~F~~l~~~~-----~~~~~~~k~ae~kmkKmerlV~~TA~LY~ELeaL~elEq~~Rr 272 (404)
+.+|+.+.... .-...|.++.+...+-|..+.+...+ +.+.+ .++.+.+++
T Consensus 347 ~~~~~~v~~~vC~~C~~~~~CW~~~~~~Ty~~~~~l~~~~e~-~~~~~--~~~p~~~~~ 402 (764)
T TIGR02865 347 SYLLENLAERVCQSCNMKHRCWKREFDYTYSAMEELIENLEE-KKDPN--SKLPDEFER 402 (764)
T ss_pred HHHHHHHhhchhhCCCCCchhhCcchHHHHHHHHHHHHHHHh-cCCch--hhhhHHHHH
Confidence 88888877532 22345666767666666666655443 22332 455555544
No 4
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=49.98 E-value=99 Score=33.50 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHhhh
Q 015574 237 QEAELLMEQLMTLVQHTAELYNEL-----QILDRFEQDCQHKRQE 276 (404)
Q Consensus 237 k~ae~kmkKmerlV~~TA~LY~EL-----eaL~elEq~~Rrk~~~ 276 (404)
.+++..+..|+.++..--.||+|+ +-|++|+.+||++...
T Consensus 201 ~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~ 245 (569)
T PRK04778 201 DQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEE 245 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 677888888888888888999988 4589999999888654
No 5
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=48.72 E-value=99 Score=33.58 Aligned_cols=93 Identities=15% Similarity=0.259 Sum_probs=56.9
Q ss_pred cccchhHHHHHHhh---c--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHhhhcCCCCCC
Q 015574 214 QWHNLGRYFEKISR---E--LIPQKQLKQEAELLMEQLMTLVQHTAELYNEL-----QILDRFEQDCQHKRQEEDNPVGS 283 (404)
Q Consensus 214 ~lh~fdr~F~~l~~---~--~~~~~~~~k~ae~kmkKmerlV~~TA~LY~EL-----eaL~elEq~~Rrk~~~~e~~~~~ 283 (404)
+|.+++.-|+.+.. . ....+..-.+++..+..|+..+..--.||+++ +.|++|+.+|+++..+.-....-
T Consensus 169 ~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~ 248 (560)
T PF06160_consen 169 QLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHL 248 (560)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 34455555555542 1 11222333678888999999999999999998 57999999998886543221110
Q ss_pred CCCccHHHHHHHHHHHHHHHHhh
Q 015574 284 QKGESFAILRAELKSQRKQVKIL 306 (404)
Q Consensus 284 ~~g~~l~~lqqklk~QRq~VK~L 306 (404)
.-...+..++.++..=...+++|
T Consensus 249 ~i~~~i~~i~~~l~~~~~~L~~l 271 (560)
T PF06160_consen 249 DIEEEIEQIEEQLEEALALLKNL 271 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcC
Confidence 11123555555555555555543
No 6
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=42.07 E-value=52 Score=35.72 Aligned_cols=84 Identities=23% Similarity=0.224 Sum_probs=52.4
Q ss_pred chhccccChHHH---HHHHHHHHHHHHhHHHHhHhhhhccCCCc-cc-cchhHHHHHHhhcccch------hhhHHHHHH
Q 015574 173 VQNLVSKDMDEL---LKIFAADKRDDLKIFTGEVVRFGNRSKDP-QW-HNLGRYFEKISRELIPQ------KQLKQEAEL 241 (404)
Q Consensus 173 V~~LVS~D~~~L---L~LA~AEk~eeL~~~A~sVaRLG~rC~DP-~l-h~fdr~F~~l~~~~~~~------~~~~k~ae~ 241 (404)
.-+|-+.+-+|+ |.|-----++-|..-|=.|+=||---+++ .| .+|=-+|.-+..-.-.| +..++++.+
T Consensus 167 lPRlAv~n~~f~~~~Lgikd~~hrQKlqLkalDvVLFGpp~~~~~n~~KD~iLv~lili~v~gcw~ay~Qnk~akehv~k 246 (575)
T KOG4403|consen 167 LPRLAVPNSDFLGKVLGIKDRSHRQKLQLKALDVVLFGPPYKTNHNWTKDFILVVLILIGVGGCWFAYRQNKKAKEHVNK 246 (575)
T ss_pred ccccccCchHHhhhhhccCchHHHHhhhhhhcceEEecCCcCCCcchhhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Confidence 345555666665 33444445788888888999999666665 56 78888888776533223 223466666
Q ss_pred HHHHHHHHHHHHHHH
Q 015574 242 LMEQLMTLVQHTAEL 256 (404)
Q Consensus 242 kmkKmerlV~~TA~L 256 (404)
.|++||-|-.+-.+|
T Consensus 247 m~kdle~Lq~aEqsl 261 (575)
T KOG4403|consen 247 MMKDLEGLQRAEQSL 261 (575)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665544443
No 7
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=41.23 E-value=25 Score=27.99 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=46.7
Q ss_pred HHHHHHHHhhhcCChHHHHHhhhhccCcccchhccccChHHHHHHHHHHHHHHHhHHHHhHhhhhccCCCccccchh
Q 015574 143 NTIVKGSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSKDPQWHNLG 219 (404)
Q Consensus 143 ntMSKl~~L~~SLSd~eI~rLR~evL~SeGV~~LVS~D~~~LL~LA~AEk~eeL~~~A~sVaRLG~rC~DP~lh~fd 219 (404)
|...|+-..+..|++.|-. |..-+-++.+.+..+-..|..+.+..-..+|.||.+++.=..|+.|-
T Consensus 2 ~l~~~i~~~~~~ls~~e~~-----------Ia~yil~~~~~~~~~si~elA~~~~vS~sti~Rf~kkLG~~gf~efk 67 (77)
T PF01418_consen 2 NLLEKIRSQYNSLSPTEKK-----------IADYILENPDEIAFMSISELAEKAGVSPSTIVRFCKKLGFSGFKEFK 67 (77)
T ss_dssp -HHHHHHHHGGGS-HHHHH-----------HHHHHHH-HHHHCT--HHHHHHHCTS-HHHHHHHHHHCTTTCHHHHH
T ss_pred cHHHHHHHHHhhCCHHHHH-----------HHHHHHhCHHHHHHccHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHH
Confidence 4566777788889988744 44455677888889999999999999999999999998855444443
No 8
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=40.90 E-value=81 Score=28.33 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=37.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHHHHhhhhc
Q 015574 254 AELYNELQILDRFEQDCQHKRQEEDNPVGSQKGESFAILRAELKSQRKQVKILRKK 309 (404)
Q Consensus 254 A~LY~ELeaL~elEq~~Rrk~~~~e~~~~~~~g~~l~~lqqklk~QRq~VK~LKk~ 309 (404)
..|+.+++.|+.|+..+++....-+. ..+.+..|++.++.+..+++...++
T Consensus 34 ~qL~~~~~~l~lLq~e~~~~e~~le~-----d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 34 RQLAANLHQLELLQEEIEKEEAALER-----DYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45668889999999988776544332 3457888999998888888776654
No 9
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=40.46 E-value=3e+02 Score=25.40 Aligned_cols=120 Identities=18% Similarity=0.269 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhHHHHhHhhhhccCCCc----cccchhHHHHHHhhcccchhhhHHHHHHH---HHHHHHHHHHHHHHHHH
Q 015574 187 IFAADKRDDLKIFTGEVVRFGNRSKDP----QWHNLGRYFEKISRELIPQKQLKQEAELL---MEQLMTLVQHTAELYNE 259 (404)
Q Consensus 187 LA~AEk~eeL~~~A~sVaRLG~rC~DP----~lh~fdr~F~~l~~~~~~~~~~~k~ae~k---mkKmerlV~~TA~LY~E 259 (404)
=...|....+..|+.+...||.-..++ .|+.|..++..+..-.. .....++..- ++...+++.+...+.+.
T Consensus 52 ~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~~--~~a~~~~~~l~~~L~ey~~~~~svk~~l~~ 129 (236)
T PF09325_consen 52 KRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELLE--EQANQEEETLGEPLREYLRYIESVKEALNR 129 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888999999998877764 34444444444432211 1122222222 33333333333222221
Q ss_pred ----HhHHHHHHHHHHHHhhhcCCCCC--CCCCccHHHHHHHHHHHHHHHHhhhh
Q 015574 260 ----LQILDRFEQDCQHKRQEEDNPVG--SQKGESFAILRAELKSQRKQVKILRK 308 (404)
Q Consensus 260 ----LeaL~elEq~~Rrk~~~~e~~~~--~~~g~~l~~lqqklk~QRq~VK~LKk 308 (404)
+..+...++++.++....+.... ..+.+.+..++.+|..-.+.|..+++
T Consensus 130 R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~ 184 (236)
T PF09325_consen 130 RDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKD 184 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444556666666544333211 12346778888888877777776663
No 10
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.85 E-value=23 Score=29.03 Aligned_cols=31 Identities=19% Similarity=0.420 Sum_probs=25.6
Q ss_pred HHHHHHhHHHHhHhhhhccCCCccccchhHH
Q 015574 191 DKRDDLKIFTGEVVRFGNRSKDPQWHNLGRY 221 (404)
Q Consensus 191 Ek~eeL~~~A~sVaRLG~rC~DP~lh~fdr~ 221 (404)
.+.|-++.|+++-.||-+||.-|..+.|-..
T Consensus 6 ~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki 36 (67)
T KOG3498|consen 6 QLVEPLRDFAKDSIRFVKRCTKPDRKEFTKI 36 (67)
T ss_pred HhcchHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 3567789999999999999999977766543
No 11
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=35.40 E-value=46 Score=25.28 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 015574 289 FAILRAELKSQRKQVKILRK 308 (404)
Q Consensus 289 l~~lqqklk~QRq~VK~LKk 308 (404)
+.+++..++.|++|...||.
T Consensus 17 l~elk~~l~~Q~kE~~~LRn 36 (45)
T PF11598_consen 17 LQELKELLRQQIKETRFLRN 36 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999985
No 12
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=33.03 E-value=1.5e+02 Score=28.25 Aligned_cols=23 Identities=9% Similarity=0.271 Sum_probs=7.2
Q ss_pred hccCCCccccchhHHHHHHhhcc
Q 015574 207 GNRSKDPQWHNLGRYFEKISREL 229 (404)
Q Consensus 207 G~rC~DP~lh~fdr~F~~l~~~~ 229 (404)
+..|.+--++.++..|++|....
T Consensus 96 sancs~QVqqeL~~tf~rL~~~V 118 (171)
T PF04799_consen 96 SANCSHQVQQELSSTFARLCQQV 118 (171)
T ss_dssp --------------HHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999998753
No 13
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=29.72 E-value=3.8e+02 Score=27.89 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=20.6
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHhhhhc
Q 015574 281 VGSQKGESFAILRAELKSQRKQVKILRKK 309 (404)
Q Consensus 281 ~~~~~g~~l~~lqqklk~QRq~VK~LKk~ 309 (404)
+.|.+. -+++++++|-.=|++||+||+.
T Consensus 284 nlPTRs-ElDe~~krL~ELrR~vr~L~k~ 311 (320)
T TIGR01834 284 NLPTRS-ELDEAHQRIQQLRREVKSLKKR 311 (320)
T ss_pred CCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 4788888888888888888864
No 14
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=29.11 E-value=5.6e+02 Score=25.10 Aligned_cols=118 Identities=17% Similarity=0.185 Sum_probs=64.5
Q ss_pred HHHHHHHHhHHHHhHhhhhccCCCc----cccchhHHHHHHhhcccchhhhH---HHHHHHHHHHHHHHHHHHHHHHH--
Q 015574 189 AADKRDDLKIFTGEVVRFGNRSKDP----QWHNLGRYFEKISRELIPQKQLK---QEAELLMEQLMTLVQHTAELYNE-- 259 (404)
Q Consensus 189 ~AEk~eeL~~~A~sVaRLG~rC~DP----~lh~fdr~F~~l~~~~~~~~~~~---k~ae~kmkKmerlV~~TA~LY~E-- 259 (404)
..|....+..||.++.-||+-=..+ .+.+|-.++.++..-. +++.. -...-.++...|++++...++.+
T Consensus 52 rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~laev~~ki~~~~--~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~ 129 (234)
T cd07664 52 RKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLH--QDQAFADFYLFSELLGDYIRLIAAVKGVFDQRM 129 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4577888888999999998732223 2233333333333221 11111 12233466666777776544433
Q ss_pred --HhHHHHHHHHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHHHHhhhh
Q 015574 260 --LQILDRFEQDCQHKRQEEDNPVGSQKGESFAILRAELKSQRKQVKILRK 308 (404)
Q Consensus 260 --LeaL~elEq~~Rrk~~~~e~~~~~~~g~~l~~lqqklk~QRq~VK~LKk 308 (404)
.......++++.+|....+......+.+++..++.+|..-...|...++
T Consensus 130 k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~ 180 (234)
T cd07664 130 KCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGER 180 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3555677778877654322211112346788888888755555555554
No 15
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=29.07 E-value=4.4e+02 Score=23.90 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 015574 237 QEAELLMEQLMTLVQHTAELYNELQ 261 (404)
Q Consensus 237 k~ae~kmkKmerlV~~TA~LY~ELe 261 (404)
+..+.+++.++.-+....+-++++.
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 16
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=28.77 E-value=2.3e+02 Score=25.76 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 015574 250 VQHTAELYNELQILDRFEQDCQHKRQE 276 (404)
Q Consensus 250 V~~TA~LY~ELeaL~elEq~~Rrk~~~ 276 (404)
..+-..+-.||+.|.+|-+-|+++...
T Consensus 44 ~aAD~~vVsEL~~Ls~LK~~y~~~~~~ 70 (131)
T PF04859_consen 44 QAADEAVVSELRRLSELKRRYRKKQSD 70 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344456678999999999999887543
No 17
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=27.12 E-value=5.3e+02 Score=29.49 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=11.0
Q ss_pred HHHhhhhcccccccHHHHHHHHHH
Q 015574 302 QVKILRKKSLWSRSLEEVMEKLVD 325 (404)
Q Consensus 302 ~VK~LKk~SLWsrt~D~VVekLvr 325 (404)
.++.||+.+.=.+...++...+.+
T Consensus 584 ~i~~lk~~~~~~~~~~~~~~~~~~ 607 (771)
T TIGR01069 584 IIRELKEKKIHKAKEIKSIEDLVK 607 (771)
T ss_pred HHHHHHhccccHHHHHHHHHHHHH
Confidence 344477654333334444444433
No 18
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=26.46 E-value=6.3e+02 Score=24.88 Aligned_cols=127 Identities=15% Similarity=0.204 Sum_probs=69.3
Q ss_pred HHHHHHHHhHHHHhHhhhhccCCCccc----cchhHHHHHHhhcccchhhhH---HHHHHHHHHHHHHHHHHHHHHHH--
Q 015574 189 AADKRDDLKIFTGEVVRFGNRSKDPQW----HNLGRYFEKISRELIPQKQLK---QEAELLMEQLMTLVQHTAELYNE-- 259 (404)
Q Consensus 189 ~AEk~eeL~~~A~sVaRLG~rC~DP~l----h~fdr~F~~l~~~~~~~~~~~---k~ae~kmkKmerlV~~TA~LY~E-- 259 (404)
..|+...+..||.++.-||+-=.+|.+ .+|-.+..++..-. +++.. -...-.++..-|+|.+....+.+
T Consensus 52 r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev~~~i~~~~--~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~ 129 (234)
T cd07665 52 RKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLH--QEQANNDFFLLAELLADYIRLLSAVRGAFDQRM 129 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 467777888888888888874444533 22332222222211 11111 12233455555666555444333
Q ss_pred --HhHHHHHHHHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHHHHhhhhcccccccHHHHHHHH
Q 015574 260 --LQILDRFEQDCQHKRQEEDNPVGSQKGESFAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKL 323 (404)
Q Consensus 260 --LeaL~elEq~~Rrk~~~~e~~~~~~~g~~l~~lqqklk~QRq~VK~LKk~SLWsrt~D~VVekL 323 (404)
-+..-.+++++.+|....+......+.+++...+.+|..-.+.|...++ .||.|.+.+
T Consensus 130 k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~------~fe~is~~i 189 (234)
T cd07665 130 KTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYER------DFERISATV 189 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 2455666888877654322211122457888888888877777777776 455554443
No 19
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=26.42 E-value=3.9e+02 Score=32.87 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHhhhcCC-C-----CCCCCCccHHHHHHHHHHHHHHH
Q 015574 237 QEAELLMEQLMTLVQHTA-------ELYNELQILDRFEQDCQHKRQEEDN-P-----VGSQKGESFAILRAELKSQRKQV 303 (404)
Q Consensus 237 k~ae~kmkKmerlV~~TA-------~LY~ELeaL~elEq~~Rrk~~~~e~-~-----~~~~~g~~l~~lqqklk~QRq~V 303 (404)
.+|++|++....++++++ +|-.+++.|.+.=|+.+.++...|. . ..+..+.-|+.||.+...--+-+
T Consensus 1204 ~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~ 1283 (1758)
T KOG0994|consen 1204 LDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTY 1283 (1758)
T ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHH
Confidence 688888888877775433 3444444444444444333322221 1 12222334666776666665666
Q ss_pred Hhhhh
Q 015574 304 KILRK 308 (404)
Q Consensus 304 K~LKk 308 (404)
|.|++
T Consensus 1284 keL~e 1288 (1758)
T KOG0994|consen 1284 KELRE 1288 (1758)
T ss_pred HHHHH
Confidence 66554
No 20
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=26.38 E-value=8.2e+02 Score=26.14 Aligned_cols=89 Identities=25% Similarity=0.285 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHh----HHHHHH-----HHHHHHhhhcCCCCCCCCCccHHHHHHHHH----HHHHHHHh
Q 015574 240 ELLMEQLMTLVQHTAELYN-ELQ----ILDRFE-----QDCQHKRQEEDNPVGSQKGESFAILRAELK----SQRKQVKI 305 (404)
Q Consensus 240 e~kmkKmerlV~~TA~LY~-ELe----aL~elE-----q~~Rrk~~~~e~~~~~~~g~~l~~lqqklk----~QRq~VK~ 305 (404)
.-+.++||..|.-..+|++ ||. .|+..| |.|-|...= .|.++.+|.+|. .|.|+|-.
T Consensus 257 r~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi---------~E~~Es~qtRisklE~~~~Qq~~q 327 (395)
T PF10267_consen 257 RYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDI---------WEVMESCQTRISKLEQQQQQQVVQ 327 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3345667777777666663 442 333444 333332111 135667776553 46677777
Q ss_pred hhhcc-cccccHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 015574 306 LRKKS-LWSRSLEEVMEKLVDIVTFLLLEMHDAFGST 341 (404)
Q Consensus 306 LKk~S-LWsrt~D~VVekLvriV~tI~~rI~~VFG~~ 341 (404)
+.-.. +|.| .++-++..++.++. .|..||-..
T Consensus 328 ~e~~~n~~~r---~~l~k~inllL~l~-~vlLv~vSt 360 (395)
T PF10267_consen 328 LEGTENSRAR---ALLGKLINLLLTLL-TVLLVFVST 360 (395)
T ss_pred hcccccccHH---HHHHHHHHHHHHHH-HHHHHHHHH
Confidence 76655 7887 67777777766654 444555433
No 21
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=26.02 E-value=1.8e+02 Score=26.57 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHHHHHHHhhhhc
Q 015574 288 SFAILRAELKSQRKQVKILRKK 309 (404)
Q Consensus 288 ~l~~lqqklk~QRq~VK~LKk~ 309 (404)
++..||.-+..|++++++|+..
T Consensus 105 ~I~~Lq~~~~~~~~ki~~Le~~ 126 (146)
T PF08702_consen 105 NIRVLQNILRSNRQKIQRLEQD 126 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888753
No 22
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=25.86 E-value=6.1e+02 Score=25.76 Aligned_cols=54 Identities=24% Similarity=0.367 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhhh-hcccccccHHHHHHHHHHHHH--HHHHHHHHhhCCCC
Q 015574 289 FAILRAELKSQRKQVKILR-KKSLWSRSLEEVMEKLVDIVT--FLLLEMHDAFGSTD 342 (404)
Q Consensus 289 l~~lqqklk~QRq~VK~LK-k~SLWsrt~D~VVekLvriV~--tI~~rI~~VFG~~~ 342 (404)
+...+.++..-.+-+..|. ++.=|..+++..-+.+..++- +|-+-...-+|+..
T Consensus 272 ~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~llaaa~isY~G~f~ 328 (344)
T PF12777_consen 272 IEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSLLAAAFISYLGPFT 328 (344)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCTS
T ss_pred HHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCCC
Confidence 4445555655556666664 345699999998666666542 23334444455554
No 23
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=25.72 E-value=5.8e+02 Score=24.16 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=16.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhCC
Q 015574 312 WSRSLEEVMEKLVDIVTFLLLEMHDAFGS 340 (404)
Q Consensus 312 Wsrt~D~VVekLvriV~tI~~rI~~VFG~ 340 (404)
|.+.+..+-..+...=..+..++..+|..
T Consensus 131 ~~~~l~~l~~~l~~~r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 131 RKQRLSQLQSQLARRRRQLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 33444444455555555556677777776
No 24
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=25.63 E-value=2.6e+02 Score=28.79 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.3
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhc
Q 015574 287 ESFAILRAELKSQRKQVKILRKK 309 (404)
Q Consensus 287 ~~l~~lqqklk~QRq~VK~LKk~ 309 (404)
..+..||++++..|+++.+|++.
T Consensus 278 sTiliLQq~Lketr~~Iq~l~k~ 300 (330)
T KOG2991|consen 278 STILILQQKLKETRKEIQRLKKG 300 (330)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999873
No 25
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=25.41 E-value=5.2e+02 Score=28.35 Aligned_cols=75 Identities=12% Similarity=0.194 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHHHHhhhhcccccccHHHHHHHHHHH
Q 015574 247 MTLVQHTAELYNELQILDRFEQDCQHKRQEEDNPVGSQKGESFAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDI 326 (404)
Q Consensus 247 erlV~~TA~LY~ELeaL~elEq~~Rrk~~~~e~~~~~~~g~~l~~lqqklk~QRq~VK~LKk~SLWsrt~D~VVekLvri 326 (404)
..|......+.+-||...+-..-+|.| ...++|++|..+-++-..-||..+|++-||-++. +
T Consensus 101 ~~~ad~a~s~~kq~ei~td~Q~~LR~k--------------~~~e~q~qi~ka~e~adkA~KagIf~~ifdWi~~----~ 162 (473)
T PRK15362 101 SVFGDNAQSLCQALEIATEVQEALRDK--------------QVKEYQEQIQKAIEQEDKARKAGIFGAIFDWIVG----I 162 (473)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH----H
Confidence 345566677778888877777777664 2678999999999999999999999999988654 5
Q ss_pred HHHHHHHHHHhhC
Q 015574 327 VTFLLLEMHDAFG 339 (404)
Q Consensus 327 V~tI~~rI~~VFG 339 (404)
|-.|+.-|+.+=|
T Consensus 163 ~e~v~Ga~kv~~G 175 (473)
T PRK15362 163 FETVIGALKVVEG 175 (473)
T ss_pred HHHHHHHHHHHhc
Confidence 5666788887766
No 26
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.56 E-value=2.1e+02 Score=23.38 Aligned_cols=16 Identities=25% Similarity=0.704 Sum_probs=9.9
Q ss_pred hcccccccHHHHHHHH
Q 015574 308 KKSLWSRSLEEVMEKL 323 (404)
Q Consensus 308 k~SLWsrt~D~VVekL 323 (404)
+.+-|...++.++.+|
T Consensus 54 e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 54 ERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4556666666666654
No 27
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=24.53 E-value=4.9e+02 Score=25.13 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 015574 234 QLKQEAELLMEQLMTLVQHTAELYN 258 (404)
Q Consensus 234 ~~~k~ae~kmkKmerlV~~TA~LY~ 258 (404)
+.+++|++.++.+.+.|--..-||+
T Consensus 51 ~~kkeA~ki~KniIKi~vKigvl~r 75 (186)
T PF05527_consen 51 GNKKEAEKIIKNIIKIVVKIGVLYR 75 (186)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhheeee
Confidence 3578999999999999999998886
No 28
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=24.03 E-value=5.9e+02 Score=25.61 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-HHH------HHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHHHHhhhhcccc
Q 015574 240 ELLMEQLMTLVQHTAELYNELQILD-RFE------QDCQHKRQEEDNPVGSQKGESFAILRAELKSQRKQVKILRKKSLW 312 (404)
Q Consensus 240 e~kmkKmerlV~~TA~LY~ELeaL~-elE------q~~Rrk~~~~e~~~~~~~g~~l~~lqqklk~QRq~VK~LKk~SLW 312 (404)
+..+++|++++-.-++..|+|+.|. +.| |.+++-+. +.-.+|-..++.-+|+.|+.++.-+-
T Consensus 56 d~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK-----------~aE~iLtta~fqA~qKLksi~~A~kr 124 (272)
T KOG4552|consen 56 DDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLK-----------SAEVILTTACFQANQKLKSIKEAEKR 124 (272)
T ss_pred cHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4458888888888888888887763 222 22222222 12346677778888999999888777
Q ss_pred cccHHHHHHH
Q 015574 313 SRSLEEVMEK 322 (404)
Q Consensus 313 srt~D~VVek 322 (404)
--+-|+++..
T Consensus 125 pvsSEelIKy 134 (272)
T KOG4552|consen 125 PVSSEELIKY 134 (272)
T ss_pred CCCHHHHHHH
Confidence 7777766543
No 29
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=21.89 E-value=5.7e+02 Score=23.65 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=13.0
Q ss_pred cCcccchhccccChHHHHHHHHHHHHHHHhHHHHhHh
Q 015574 168 LPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVV 204 (404)
Q Consensus 168 L~SeGV~~LVS~D~~~LL~LA~AEk~eeL~~~A~sVa 204 (404)
|.+.|+++|-..+.+ .-.-.|++++|+.+.++.-
T Consensus 52 L~~~gi~qLy~~~~~---~~~~~d~~~eLkkL~~sll 85 (162)
T PF05983_consen 52 LESQGIRQLYPPDDD---PSPSVDRKKELKKLNKSLL 85 (162)
T ss_dssp ---------------------HHHHHHHHHHHHHHHH
T ss_pred chhccccccCCCccc---cCCCchHHHHHHHHHHHHH
Confidence 777888888877722 2345688899999988865
No 30
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.75 E-value=4.9e+02 Score=26.46 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHHHHHhhhhcccccccHH
Q 015574 288 SFAILRAELKSQRKQVKILRKKSLWSRSLE 317 (404)
Q Consensus 288 ~l~~lqqklk~QRq~VK~LKk~SLWsrt~D 317 (404)
....+...+.+-+.++.+|++...||.+|.
T Consensus 114 e~~sl~~q~~~~~~~L~~L~ktNv~n~~F~ 143 (314)
T PF04111_consen 114 ERDSLKNQYEYASNQLDRLRKTNVYNDTFH 143 (314)
T ss_dssp HHHHHHHHHHHHHHHHHCHHT--TTTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhceee
Confidence 466778888888999999999999999884
No 31
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=21.13 E-value=57 Score=26.63 Aligned_cols=30 Identities=27% Similarity=0.542 Sum_probs=26.6
Q ss_pred HHHHHHHhHHHHhHhhhhccCCCccccchh
Q 015574 190 ADKRDDLKIFTGEVVRFGNRSKDPQWHNLG 219 (404)
Q Consensus 190 AEk~eeL~~~A~sVaRLG~rC~DP~lh~fd 219 (404)
-++.|+++.|-++-.|+=++|+-|.|..|-
T Consensus 5 ~~~~e~~~~~lke~~rvl~~arKP~~eEy~ 34 (65)
T COG2443 5 MDKPEELREFLKEYRRVLKVARKPDWEEYS 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 478899999999999999999999997664
No 32
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=20.42 E-value=5.2e+02 Score=26.59 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=42.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHHHHhhh
Q 015574 230 IPQKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDCQHKRQEEDNPVGSQKGESFAILRAELKSQRKQVKILR 307 (404)
Q Consensus 230 ~~~~~~~k~ae~kmkKmerlV~~TA~LY~ELeaL~elEq~~Rrk~~~~e~~~~~~~g~~l~~lqqklk~QRq~VK~LK 307 (404)
..|++|..++|.--++=-.|+..--++-+.|..|...+-.-..-. ..+++.+.+.+|..++++|++|+
T Consensus 34 gA~Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k----------~~~si~~q~~~i~~l~~~i~~l~ 101 (301)
T PF06120_consen 34 GAWYYFYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAK----------AEESIAAQKRAIEDLQKKIDSLK 101 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778777777666666777777777777777766554332111 12356666666666666666665
No 33
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.41 E-value=3.1e+02 Score=25.23 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=19.4
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhcc
Q 015574 287 ESFAILRAELKSQRKQVKILRKKS 310 (404)
Q Consensus 287 ~~l~~lqqklk~QRq~VK~LKk~S 310 (404)
+.++.++++|..+..++..||+.+
T Consensus 161 ~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888888888764
Done!